Query 011328
Match_columns 488
No_of_seqs 341 out of 2480
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 00:07:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011328.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011328hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166 Karyopherin (importin) 100.0 2.9E-62 6.2E-67 455.0 46.8 447 30-487 66-514 (514)
2 COG5064 SRP1 Karyopherin (impo 100.0 6.3E-60 1.4E-64 406.8 34.8 441 30-474 71-516 (526)
3 KOG0166 Karyopherin (importin) 100.0 2.8E-43 6.1E-48 328.2 29.4 378 16-402 100-489 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 7.1E-43 1.5E-47 301.5 22.8 375 14-399 103-496 (526)
5 PLN03200 cellulose synthase-in 100.0 9.8E-38 2.1E-42 332.6 44.3 415 30-459 189-770 (2102)
6 PLN03200 cellulose synthase-in 100.0 1E-36 2.2E-41 324.9 44.0 416 30-455 404-862 (2102)
7 KOG4224 Armadillo repeat prote 100.0 3E-31 6.5E-36 231.6 23.9 408 29-455 84-495 (550)
8 KOG4224 Armadillo repeat prote 100.0 1.7E-30 3.7E-35 226.9 25.4 364 28-402 124-496 (550)
9 PF05804 KAP: Kinesin-associat 100.0 4.3E-25 9.4E-30 218.6 35.9 380 44-451 263-647 (708)
10 PF05804 KAP: Kinesin-associat 99.9 3.1E-23 6.7E-28 205.5 35.6 363 27-404 287-654 (708)
11 KOG0168 Putative ubiquitin fus 99.9 2.1E-19 4.7E-24 173.3 29.5 389 30-434 167-653 (1051)
12 KOG1048 Neural adherens juncti 99.8 2.7E-18 5.9E-23 166.5 25.9 366 74-456 234-687 (717)
13 KOG1048 Neural adherens juncti 99.8 1.2E-17 2.6E-22 162.0 25.6 365 30-402 233-687 (717)
14 PF10508 Proteasom_PSMB: Prote 99.8 6.6E-16 1.4E-20 152.2 36.1 400 34-456 42-465 (503)
15 PF10508 Proteasom_PSMB: Prote 99.8 6.1E-16 1.3E-20 152.5 35.0 366 76-453 41-420 (503)
16 KOG4500 Rho/Rac GTPase guanine 99.8 4.1E-17 8.9E-22 146.7 23.7 381 41-439 53-460 (604)
17 KOG2023 Nuclear transport rece 99.8 1.1E-17 2.4E-22 157.7 19.5 416 34-472 94-636 (885)
18 KOG2171 Karyopherin (importin) 99.8 4.2E-15 9.1E-20 149.7 33.3 392 30-446 118-539 (1075)
19 KOG1222 Kinesin associated pro 99.7 3.4E-15 7.4E-20 136.2 27.9 379 42-449 275-659 (791)
20 KOG4500 Rho/Rac GTPase guanine 99.7 4.2E-15 9.1E-20 133.9 26.7 404 30-448 87-514 (604)
21 KOG4199 Uncharacterized conser 99.7 4.2E-15 9.2E-20 129.8 25.8 310 40-356 117-444 (461)
22 KOG2122 Beta-catenin-binding p 99.7 4.2E-15 9.1E-20 151.0 27.0 363 32-401 199-603 (2195)
23 KOG1222 Kinesin associated pro 99.7 7.8E-14 1.7E-18 127.5 29.7 361 30-406 304-670 (791)
24 KOG4199 Uncharacterized conser 99.7 1E-13 2.2E-18 121.2 28.9 317 72-397 103-442 (461)
25 KOG1293 Proteins containing ar 99.7 1.7E-14 3.8E-19 136.8 25.2 380 12-400 38-534 (678)
26 KOG1293 Proteins containing ar 99.7 2.2E-13 4.7E-18 129.5 29.4 407 34-455 13-535 (678)
27 PRK09687 putative lyase; Provi 99.7 1.7E-14 3.6E-19 130.6 21.2 257 72-396 22-279 (280)
28 KOG2171 Karyopherin (importin) 99.7 3.1E-13 6.8E-18 136.4 32.2 359 32-400 161-550 (1075)
29 KOG2122 Beta-catenin-binding p 99.7 9.7E-15 2.1E-19 148.4 21.3 325 30-358 235-603 (2195)
30 PRK09687 putative lyase; Provi 99.7 4.3E-14 9.3E-19 128.0 23.3 255 30-353 23-279 (280)
31 PRK13800 putative oxidoreducta 99.6 2.5E-13 5.5E-18 143.6 29.6 275 30-395 621-895 (897)
32 PF04826 Arm_2: Armadillo-like 99.6 4.1E-13 9E-18 118.6 21.7 238 197-444 9-253 (254)
33 PRK13800 putative oxidoreducta 99.6 1.9E-12 4E-17 137.1 29.2 277 72-450 620-896 (897)
34 PF01602 Adaptin_N: Adaptin N 99.5 7.7E-13 1.7E-17 133.9 21.9 361 31-457 80-448 (526)
35 KOG2023 Nuclear transport rece 99.5 6.9E-13 1.5E-17 125.8 17.2 319 116-452 128-504 (885)
36 PF04826 Arm_2: Armadillo-like 99.5 1.1E-12 2.3E-17 116.1 17.4 196 70-272 9-206 (254)
37 PF01602 Adaptin_N: Adaptin N 99.5 7.9E-11 1.7E-15 119.2 31.8 359 34-454 8-370 (526)
38 PTZ00429 beta-adaptin; Provisi 99.5 2.5E-10 5.3E-15 115.9 34.3 372 31-455 69-473 (746)
39 cd00256 VATPase_H VATPase_H, r 99.5 1.1E-10 2.4E-15 110.0 29.3 322 116-452 53-424 (429)
40 cd00256 VATPase_H VATPase_H, r 99.4 5.7E-11 1.2E-15 111.9 24.6 323 31-356 54-425 (429)
41 PTZ00429 beta-adaptin; Provisi 99.4 1.5E-09 3.2E-14 110.3 36.5 294 30-356 32-326 (746)
42 cd00020 ARM Armadillo/beta-cat 99.4 3.6E-12 7.9E-17 101.4 14.1 119 68-188 2-120 (120)
43 KOG1241 Karyopherin (importin) 99.4 3.2E-11 7E-16 116.5 22.2 361 34-404 94-482 (859)
44 cd00020 ARM Armadillo/beta-cat 99.4 6.9E-12 1.5E-16 99.8 13.5 117 238-355 3-119 (120)
45 KOG0168 Putative ubiquitin fus 99.4 3.3E-10 7.1E-15 110.8 23.6 343 30-380 211-653 (1051)
46 KOG1241 Karyopherin (importin) 99.3 4.9E-10 1.1E-14 108.6 24.1 329 31-366 365-721 (859)
47 KOG0213 Splicing factor 3b, su 99.3 1.1E-09 2.4E-14 105.7 23.5 391 30-457 716-1146(1172)
48 KOG2759 Vacuolar H+-ATPase V1 99.2 3.1E-08 6.6E-13 90.4 26.0 322 117-453 66-438 (442)
49 KOG0946 ER-Golgi vesicle-tethe 99.2 1.5E-07 3.3E-12 92.0 30.3 326 73-404 22-404 (970)
50 KOG2759 Vacuolar H+-ATPase V1 99.2 3.9E-09 8.4E-14 96.1 18.2 280 32-315 116-439 (442)
51 KOG1062 Vesicle coat complex A 99.1 5.2E-08 1.1E-12 95.5 26.1 370 31-446 143-574 (866)
52 KOG2160 Armadillo/beta-catenin 99.1 1.8E-08 3.9E-13 90.7 21.0 189 212-402 95-285 (342)
53 KOG2160 Armadillo/beta-catenin 99.1 3.9E-09 8.5E-14 94.8 16.6 184 87-271 96-282 (342)
54 PF03224 V-ATPase_H_N: V-ATPas 99.1 2E-09 4.3E-14 100.3 15.0 226 118-346 57-304 (312)
55 COG5181 HSH155 U2 snRNP splice 99.1 4E-09 8.6E-14 100.0 15.8 401 32-456 523-950 (975)
56 KOG1062 Vesicle coat complex A 99.1 1.7E-07 3.8E-12 92.0 26.4 366 34-452 111-494 (866)
57 KOG0946 ER-Golgi vesicle-tethe 99.1 7.7E-07 1.7E-11 87.3 30.2 323 30-358 22-401 (970)
58 KOG1789 Endocytosis protein RM 99.1 6.7E-07 1.5E-11 90.1 30.2 331 45-382 1740-2142(2235)
59 PF03224 V-ATPase_H_N: V-ATPas 99.0 9.9E-09 2.1E-13 95.7 16.7 227 160-389 57-304 (312)
60 KOG1059 Vesicle coat complex A 99.0 2E-07 4.4E-12 90.3 25.1 220 30-271 144-365 (877)
61 KOG1061 Vesicle coat complex A 99.0 5.1E-08 1.1E-12 95.6 21.5 382 30-460 49-460 (734)
62 KOG1061 Vesicle coat complex A 99.0 9.1E-08 2E-12 93.9 22.0 300 30-355 86-414 (734)
63 COG5215 KAP95 Karyopherin (imp 99.0 1.2E-07 2.7E-12 89.4 20.5 353 34-401 98-481 (858)
64 KOG1824 TATA-binding protein-i 99.0 2.8E-07 6E-12 91.9 23.4 352 34-400 9-403 (1233)
65 COG5215 KAP95 Karyopherin (imp 98.9 2.4E-07 5.3E-12 87.5 21.2 361 29-403 128-533 (858)
66 KOG0213 Splicing factor 3b, su 98.9 3.1E-06 6.6E-11 82.6 29.0 389 30-451 636-1063(1172)
67 KOG1242 Protein containing ada 98.9 1.6E-06 3.4E-11 83.5 26.7 360 73-468 96-462 (569)
68 KOG1824 TATA-binding protein-i 98.9 3.9E-07 8.3E-12 90.9 20.9 392 32-449 570-991 (1233)
69 KOG0212 Uncharacterized conser 98.9 1.9E-07 4.1E-12 88.1 17.4 321 70-403 81-410 (675)
70 KOG0211 Protein phosphatase 2A 98.9 1.8E-06 3.9E-11 87.4 25.6 383 30-448 237-659 (759)
71 KOG0212 Uncharacterized conser 98.9 1.4E-06 3.1E-11 82.3 23.0 355 30-400 84-445 (675)
72 COG5181 HSH155 U2 snRNP splice 98.9 6.8E-07 1.5E-11 85.2 21.1 301 74-398 605-911 (975)
73 KOG1517 Guanine nucleotide bin 98.8 2.6E-07 5.6E-12 93.0 18.8 277 43-330 449-748 (1387)
74 KOG3678 SARM protein (with ste 98.8 2.7E-07 5.8E-12 85.2 16.8 273 66-355 173-451 (832)
75 KOG1060 Vesicle coat complex A 98.8 4.7E-06 1E-10 82.0 25.7 366 33-454 38-459 (968)
76 PF05536 Neurochondrin: Neuroc 98.8 2.2E-05 4.8E-10 78.2 30.6 380 30-432 5-459 (543)
77 KOG1058 Vesicle coat complex C 98.8 6.3E-06 1.4E-10 80.7 24.6 324 81-456 107-466 (948)
78 KOG1517 Guanine nucleotide bin 98.8 3.5E-07 7.7E-12 92.1 16.6 233 46-280 486-741 (1387)
79 KOG2973 Uncharacterized conser 98.7 1E-05 2.2E-10 71.2 22.6 272 161-455 6-317 (353)
80 KOG1060 Vesicle coat complex A 98.7 1.2E-05 2.6E-10 79.2 24.9 256 81-362 151-464 (968)
81 KOG3678 SARM protein (with ste 98.7 9.7E-07 2.1E-11 81.6 16.5 266 30-312 180-450 (832)
82 PF14664 RICTOR_N: Rapamycin-i 98.7 8.9E-06 1.9E-10 76.8 23.1 335 98-453 7-364 (371)
83 KOG1059 Vesicle coat complex A 98.7 2.4E-05 5.2E-10 76.4 26.0 256 73-358 144-403 (877)
84 KOG4413 26S proteasome regulat 98.7 6.3E-05 1.4E-09 66.8 26.4 342 31-377 83-459 (524)
85 KOG1242 Protein containing ada 98.7 4E-05 8.7E-10 74.1 27.3 346 30-403 96-448 (569)
86 KOG1789 Endocytosis protein RM 98.6 1.3E-05 2.8E-10 81.3 22.6 313 19-339 1760-2142(2235)
87 KOG4413 26S proteasome regulat 98.6 1.9E-05 4.2E-10 70.0 21.3 317 30-352 128-480 (524)
88 KOG2973 Uncharacterized conser 98.6 1.4E-05 2.9E-10 70.4 19.9 272 32-315 5-316 (353)
89 COG5369 Uncharacterized conser 98.6 3.1E-07 6.8E-12 86.1 10.3 309 133-451 406-739 (743)
90 KOG1077 Vesicle coat complex A 98.6 5.8E-05 1.3E-09 73.6 25.6 302 31-356 112-433 (938)
91 KOG2259 Uncharacterized conser 98.6 1.8E-05 3.9E-10 76.5 21.8 220 163-400 203-440 (823)
92 TIGR02270 conserved hypothetic 98.6 2.3E-05 5E-10 74.9 22.7 242 30-356 54-296 (410)
93 KOG0915 Uncharacterized conser 98.5 1.4E-05 3E-10 84.2 21.0 390 34-454 822-1246(1702)
94 COG5369 Uncharacterized conser 98.5 1.6E-07 3.5E-12 88.0 6.4 302 91-397 406-739 (743)
95 KOG4646 Uncharacterized conser 98.5 3.5E-06 7.6E-11 64.5 12.1 155 284-453 16-170 (173)
96 KOG1077 Vesicle coat complex A 98.5 0.00016 3.5E-09 70.6 25.6 304 118-454 113-438 (938)
97 TIGR02270 conserved hypothetic 98.5 7.7E-05 1.7E-09 71.4 23.0 244 73-400 54-297 (410)
98 KOG2259 Uncharacterized conser 98.5 6.3E-06 1.4E-10 79.5 15.3 253 119-395 201-471 (823)
99 PF14664 RICTOR_N: Rapamycin-i 98.5 2.7E-05 5.8E-10 73.6 19.5 315 32-355 27-363 (371)
100 KOG1240 Protein kinase contain 98.4 1.6E-05 3.4E-10 81.9 17.8 268 32-314 424-725 (1431)
101 COG5231 VMA13 Vacuolar H+-ATPa 98.4 2E-05 4.4E-10 69.5 15.4 235 76-314 152-428 (432)
102 COG1413 FOG: HEAT repeat [Ener 98.4 0.00028 6.2E-09 66.9 24.9 251 30-357 43-305 (335)
103 COG5240 SEC21 Vesicle coat com 98.4 0.00016 3.4E-09 69.1 21.8 350 42-452 202-554 (898)
104 PF12460 MMS19_C: RNAPII trans 98.3 0.0015 3.3E-08 63.6 29.2 350 32-402 1-397 (415)
105 KOG0211 Protein phosphatase 2A 98.3 0.00036 7.8E-09 71.2 25.1 384 34-454 201-626 (759)
106 KOG1240 Protein kinase contain 98.3 5.3E-05 1.2E-09 78.2 17.5 295 117-453 423-725 (1431)
107 KOG0915 Uncharacterized conser 98.2 0.00062 1.3E-08 72.4 25.1 316 44-368 971-1318(1702)
108 COG1413 FOG: HEAT repeat [Ener 98.2 0.00086 1.9E-08 63.6 24.5 215 73-352 43-269 (335)
109 KOG4646 Uncharacterized conser 98.2 1.2E-05 2.5E-10 61.7 8.9 135 158-293 16-150 (173)
110 COG5240 SEC21 Vesicle coat com 98.2 0.00015 3.3E-09 69.2 17.7 288 75-398 266-554 (898)
111 COG5231 VMA13 Vacuolar H+-ATPa 98.2 0.0002 4.2E-09 63.5 17.0 237 205-454 154-429 (432)
112 KOG2062 26S proteasome regulat 98.2 0.00011 2.4E-09 72.1 16.6 240 74-359 414-656 (929)
113 COG5096 Vesicle coat complex, 98.2 0.0017 3.6E-08 65.9 25.4 140 32-189 57-196 (757)
114 PF05536 Neurochondrin: Neuroc 98.1 0.00018 3.9E-09 71.8 17.8 237 74-314 6-261 (543)
115 PF00514 Arm: Armadillo/beta-c 98.1 6.5E-06 1.4E-10 50.7 4.7 41 105-145 1-41 (41)
116 PF10165 Ric8: Guanine nucleot 98.1 0.00086 1.9E-08 65.6 21.7 255 63-318 12-341 (446)
117 PF00514 Arm: Armadillo/beta-c 98.1 6.8E-06 1.5E-10 50.6 4.6 41 316-356 1-41 (41)
118 PF12348 CLASP_N: CLASP N term 98.1 7.3E-05 1.6E-09 66.6 12.9 187 252-454 17-207 (228)
119 KOG4535 HEAT and armadillo rep 98.0 0.00054 1.2E-08 64.2 17.5 355 41-401 118-561 (728)
120 KOG2734 Uncharacterized conser 98.0 0.0013 2.9E-08 61.1 19.6 226 26-252 121-371 (536)
121 KOG1943 Beta-tubulin folding c 98.0 0.0053 1.2E-07 63.5 25.7 261 72-356 340-611 (1133)
122 KOG1943 Beta-tubulin folding c 98.0 0.0053 1.1E-07 63.5 25.0 258 116-396 341-608 (1133)
123 KOG2734 Uncharacterized conser 98.0 0.0027 5.9E-08 59.0 20.9 228 63-293 115-370 (536)
124 PF12348 CLASP_N: CLASP N term 98.0 0.00012 2.7E-09 65.2 12.3 186 210-403 17-210 (228)
125 COG5096 Vesicle coat complex, 97.9 0.018 3.8E-07 58.7 27.4 169 39-230 28-196 (757)
126 KOG1991 Nuclear transport rece 97.9 0.017 3.8E-07 59.3 27.1 340 50-400 392-758 (1010)
127 PF12755 Vac14_Fab1_bd: Vacuol 97.9 8.5E-05 1.9E-09 55.3 8.4 95 301-399 2-96 (97)
128 KOG1248 Uncharacterized conser 97.9 0.018 3.9E-07 60.4 27.6 236 162-402 657-901 (1176)
129 PF13646 HEAT_2: HEAT repeats; 97.9 4.9E-05 1.1E-09 56.2 7.1 87 75-184 1-88 (88)
130 PF13646 HEAT_2: HEAT repeats; 97.9 4.1E-05 8.9E-10 56.6 6.7 86 32-141 1-88 (88)
131 KOG2274 Predicted importin 9 [ 97.9 0.0046 1E-07 62.7 22.3 324 35-367 454-791 (1005)
132 PF13513 HEAT_EZ: HEAT-like re 97.9 3.6E-05 7.8E-10 51.0 5.1 55 299-354 1-55 (55)
133 KOG1991 Nuclear transport rece 97.8 0.026 5.7E-07 58.1 26.0 391 33-445 465-883 (1010)
134 PF12460 MMS19_C: RNAPII trans 97.8 0.013 2.9E-07 57.1 23.7 297 43-358 56-396 (415)
135 KOG4535 HEAT and armadillo rep 97.7 0.0043 9.4E-08 58.4 17.8 404 35-455 52-561 (728)
136 KOG1058 Vesicle coat complex C 97.7 0.0029 6.2E-08 62.8 17.0 328 34-402 103-466 (948)
137 KOG1078 Vesicle coat complex C 97.7 0.0032 6.9E-08 62.8 17.4 140 200-355 391-531 (865)
138 KOG1078 Vesicle coat complex C 97.6 0.011 2.4E-07 59.2 20.3 286 117-452 246-531 (865)
139 KOG1020 Sister chromatid cohes 97.6 0.14 3.1E-06 55.4 33.8 395 31-452 817-1253(1692)
140 KOG1248 Uncharacterized conser 97.6 0.009 2E-07 62.5 20.2 243 78-325 658-910 (1176)
141 PF10165 Ric8: Guanine nucleot 97.6 0.021 4.5E-07 56.0 21.5 238 30-271 22-337 (446)
142 KOG1967 DNA repair/transcripti 97.6 0.0011 2.3E-08 67.2 12.3 190 117-311 816-1021(1030)
143 PF08569 Mo25: Mo25-like; Int 97.6 0.014 3.1E-07 54.3 19.0 205 236-452 70-282 (335)
144 PF09759 Atx10homo_assoc: Spin 97.5 0.0005 1.1E-08 51.1 7.6 68 90-157 2-71 (102)
145 PF08569 Mo25: Mo25-like; Int 97.5 0.049 1.1E-06 50.8 22.5 225 199-436 75-313 (335)
146 PF05918 API5: Apoptosis inhib 97.5 0.018 3.8E-07 56.9 19.8 296 76-403 26-349 (556)
147 PF12755 Vac14_Fab1_bd: Vacuol 97.5 0.0025 5.4E-08 47.5 10.9 93 344-452 3-95 (97)
148 PF13513 HEAT_EZ: HEAT-like re 97.5 0.0002 4.3E-09 47.4 4.7 55 214-269 1-55 (55)
149 KOG2274 Predicted importin 9 [ 97.5 0.18 3.9E-06 51.7 28.7 227 126-360 460-693 (1005)
150 KOG2062 26S proteasome regulat 97.4 0.025 5.4E-07 56.4 19.6 162 245-443 522-684 (929)
151 KOG0567 HEAT repeat-containing 97.4 0.019 4.1E-07 50.1 16.6 256 75-397 5-278 (289)
152 PF12717 Cnd1: non-SMC mitotic 97.4 0.0066 1.4E-07 51.5 13.9 93 213-315 1-93 (178)
153 PF05004 IFRD: Interferon-rela 97.4 0.0083 1.8E-07 55.6 15.5 200 245-461 46-265 (309)
154 PF11841 DUF3361: Domain of un 97.4 0.0061 1.3E-07 49.3 12.5 127 150-276 3-136 (160)
155 COG5116 RPN2 26S proteasome re 97.4 0.016 3.4E-07 55.9 16.7 230 89-362 426-656 (926)
156 PF11841 DUF3361: Domain of un 97.3 0.01 2.2E-07 48.0 13.1 130 236-366 5-141 (160)
157 PF05004 IFRD: Interferon-rela 97.3 0.028 6.1E-07 52.1 18.0 197 202-403 45-261 (309)
158 smart00185 ARM Armadillo/beta- 97.3 0.00069 1.5E-08 41.5 5.2 39 106-144 2-40 (41)
159 PF12717 Cnd1: non-SMC mitotic 97.3 0.0087 1.9E-07 50.7 13.4 92 88-189 2-93 (178)
160 smart00185 ARM Armadillo/beta- 97.3 0.00088 1.9E-08 41.0 5.2 39 317-355 2-40 (41)
161 KOG0567 HEAT repeat-containing 97.2 0.11 2.3E-06 45.6 19.1 224 160-451 38-278 (289)
162 KOG4653 Uncharacterized conser 97.2 0.0069 1.5E-07 61.2 13.1 227 75-312 729-962 (982)
163 KOG2032 Uncharacterized conser 97.2 0.056 1.2E-06 51.5 18.3 269 115-399 253-531 (533)
164 KOG2032 Uncharacterized conser 97.1 0.063 1.4E-06 51.2 18.1 150 289-453 263-416 (533)
165 KOG4151 Myosin assembly protei 97.1 0.027 5.9E-07 56.7 16.4 239 151-397 497-739 (748)
166 KOG1967 DNA repair/transcripti 97.1 0.0066 1.4E-07 61.7 12.0 216 128-355 786-1023(1030)
167 PF05918 API5: Apoptosis inhib 97.1 0.22 4.7E-06 49.5 22.0 179 30-229 23-207 (556)
168 PF12719 Cnd3: Nuclear condens 97.1 0.19 4E-06 46.7 21.0 171 200-382 26-209 (298)
169 PF06025 DUF913: Domain of Unk 97.1 0.031 6.7E-07 53.3 15.9 222 93-325 3-243 (379)
170 KOG3036 Protein involved in ce 97.0 0.041 9E-07 47.4 14.4 143 46-190 94-249 (293)
171 COG5656 SXM1 Importin, protein 97.0 0.1 2.3E-06 52.2 19.1 295 50-358 390-713 (970)
172 KOG4653 Uncharacterized conser 97.0 0.023 4.9E-07 57.6 14.7 225 119-354 730-962 (982)
173 PF12719 Cnd3: Nuclear condens 97.0 0.077 1.7E-06 49.3 17.7 171 73-254 26-209 (298)
174 KOG2025 Chromosome condensatio 97.0 0.13 2.7E-06 51.4 19.1 108 197-310 82-189 (892)
175 KOG4151 Myosin assembly protei 97.0 0.017 3.6E-07 58.2 13.4 243 105-354 493-739 (748)
176 PF04078 Rcd1: Cell differenti 96.9 0.069 1.5E-06 47.0 14.8 187 212-401 7-220 (262)
177 PF09759 Atx10homo_assoc: Spin 96.8 0.0073 1.6E-07 45.0 7.5 68 258-325 2-70 (102)
178 KOG0414 Chromosome condensatio 96.8 0.043 9.3E-07 57.7 15.1 147 196-358 915-1066(1251)
179 PRK14707 hypothetical protein; 96.8 0.93 2E-05 51.3 25.1 420 32-485 165-592 (2710)
180 PF11698 V-ATPase_H_C: V-ATPas 96.8 0.0066 1.4E-07 46.5 6.9 70 371-452 44-114 (119)
181 KOG0414 Chromosome condensatio 96.7 0.025 5.4E-07 59.4 12.6 160 73-254 919-1083(1251)
182 KOG2956 CLIP-associating prote 96.7 0.098 2.1E-06 49.6 15.1 174 172-356 300-477 (516)
183 PF13764 E3_UbLigase_R4: E3 ub 96.7 0.87 1.9E-05 47.7 23.4 210 114-338 115-361 (802)
184 KOG3036 Protein involved in ce 96.7 0.38 8.3E-06 41.7 18.9 139 259-400 96-248 (293)
185 KOG2956 CLIP-associating prote 96.5 0.14 3.1E-06 48.5 15.0 176 129-314 300-477 (516)
186 PF04078 Rcd1: Cell differenti 96.5 0.23 5E-06 43.8 15.4 201 255-460 8-225 (262)
187 KOG1949 Uncharacterized conser 96.5 0.93 2E-05 45.5 21.0 187 75-271 176-370 (1005)
188 PF11698 V-ATPase_H_C: V-ATPas 96.5 0.0068 1.5E-07 46.4 5.3 73 284-356 43-115 (119)
189 KOG1243 Protein kinase [Genera 96.4 0.14 3.1E-06 51.1 15.4 256 36-315 260-516 (690)
190 PF11864 DUF3384: Domain of un 96.4 1.2 2.6E-05 44.2 29.9 254 42-314 41-330 (464)
191 PF11701 UNC45-central: Myosin 96.3 0.025 5.4E-07 46.7 8.4 147 285-450 4-156 (157)
192 KOG1243 Protein kinase [Genera 96.3 0.33 7.3E-06 48.6 17.1 193 197-404 327-520 (690)
193 PF07814 WAPL: Wings apart-lik 96.3 0.33 7.2E-06 46.3 17.0 275 75-358 23-357 (361)
194 PF11701 UNC45-central: Myosin 96.2 0.044 9.5E-07 45.3 9.2 145 244-396 5-156 (157)
195 KOG1566 Conserved protein Mo25 96.2 0.76 1.6E-05 41.5 17.1 202 199-403 78-290 (342)
196 KOG1820 Microtubule-associated 96.1 0.15 3.2E-06 53.2 14.2 196 119-323 256-453 (815)
197 COG5098 Chromosome condensatio 96.1 0.29 6.2E-06 48.9 15.2 144 73-232 892-1040(1128)
198 PF08045 CDC14: Cell division 96.1 0.12 2.5E-06 45.9 11.5 102 89-190 106-209 (257)
199 PF11864 DUF3384: Domain of un 96.0 1.9 4.1E-05 42.9 23.3 287 44-356 4-330 (464)
200 PF01603 B56: Protein phosphat 96.0 0.11 2.5E-06 50.3 12.3 251 94-357 110-371 (409)
201 PF02985 HEAT: HEAT repeat; I 95.9 0.011 2.4E-07 33.5 3.0 30 328-357 1-30 (31)
202 KOG1020 Sister chromatid cohes 95.9 3.8 8.2E-05 45.2 28.0 143 73-230 816-961 (1692)
203 PRK14707 hypothetical protein; 95.8 5 0.00011 46.0 28.6 402 30-453 373-782 (2710)
204 PF06371 Drf_GBD: Diaphanous G 95.8 0.066 1.4E-06 45.9 8.8 112 30-144 66-186 (187)
205 KOG1525 Sister chromatid cohes 95.7 2.1 4.6E-05 47.1 21.2 147 284-453 259-405 (1266)
206 COG5656 SXM1 Importin, protein 95.7 2.8 6.1E-05 42.6 22.4 281 115-404 407-716 (970)
207 PF08045 CDC14: Cell division 95.7 0.21 4.5E-06 44.4 11.4 101 45-146 106-208 (257)
208 KOG1820 Microtubule-associated 95.6 0.56 1.2E-05 49.0 16.1 192 200-401 253-445 (815)
209 PF02985 HEAT: HEAT repeat; I 95.6 0.017 3.6E-07 32.7 3.0 29 74-103 1-29 (31)
210 COG5116 RPN2 26S proteasome re 95.5 0.13 2.8E-06 49.9 10.2 124 115-254 550-674 (926)
211 KOG1993 Nuclear transport rece 95.5 3.6 7.7E-05 42.2 22.8 345 44-401 501-866 (978)
212 PF11707 Npa1: Ribosome 60S bi 95.4 2.4 5.2E-05 40.0 20.8 160 286-454 58-238 (330)
213 KOG1566 Conserved protein Mo25 95.4 2 4.4E-05 38.9 17.4 212 236-459 73-292 (342)
214 PF11865 DUF3385: Domain of un 95.4 0.19 4.2E-06 41.5 9.8 147 73-228 10-156 (160)
215 PF01603 B56: Protein phosphat 95.4 0.83 1.8E-05 44.4 15.6 259 50-323 110-379 (409)
216 KOG1993 Nuclear transport rece 95.3 3.5 7.7E-05 42.3 19.6 318 33-362 529-870 (978)
217 PF14500 MMS19_N: Dos2-interac 95.3 2.1 4.6E-05 38.7 17.4 223 120-359 3-240 (262)
218 PF14668 RICTOR_V: Rapamycin-i 95.3 0.18 4E-06 35.0 7.9 66 302-370 4-70 (73)
219 PF14500 MMS19_N: Dos2-interac 95.3 1.6 3.6E-05 39.4 16.2 224 35-273 4-239 (262)
220 PF13764 E3_UbLigase_R4: E3 ub 95.3 3.8 8.3E-05 43.1 20.6 239 199-454 116-407 (802)
221 COG5098 Chromosome condensatio 95.3 0.3 6.5E-06 48.7 11.9 181 199-402 891-1079(1128)
222 KOG3665 ZYG-1-like serine/thre 95.2 2.6 5.6E-05 44.0 19.4 194 139-351 494-692 (699)
223 PF12530 DUF3730: Protein of u 95.2 2.1 4.6E-05 38.1 17.0 202 75-296 2-215 (234)
224 KOG0413 Uncharacterized conser 95.2 5.1 0.00011 42.2 23.4 150 299-477 945-1095(1529)
225 KOG2611 Neurochondrin/leucine- 95.0 2.2 4.9E-05 40.9 16.3 231 78-313 16-273 (698)
226 PF07814 WAPL: Wings apart-lik 95.0 1.6 3.4E-05 41.8 16.0 275 118-402 23-358 (361)
227 PF13251 DUF4042: Domain of un 95.0 0.68 1.5E-05 39.0 11.8 144 89-232 1-177 (182)
228 COG5218 YCG1 Chromosome conden 94.9 4.4 9.4E-05 40.2 20.3 110 195-310 86-195 (885)
229 PF14668 RICTOR_V: Rapamycin-i 94.9 0.19 4.1E-06 35.0 6.9 67 259-327 4-70 (73)
230 KOG2999 Regulator of Rac1, req 94.9 1.3 2.9E-05 43.2 14.6 158 31-192 84-246 (713)
231 PF01347 Vitellogenin_N: Lipop 94.8 0.77 1.7E-05 47.7 14.6 199 74-307 396-615 (618)
232 KOG3665 ZYG-1-like serine/thre 94.8 5.2 0.00011 41.8 20.1 175 265-452 494-696 (699)
233 PF06025 DUF913: Domain of Unk 94.7 1.7 3.7E-05 41.7 15.5 197 135-340 3-209 (379)
234 KOG1949 Uncharacterized conser 94.5 0.94 2E-05 45.5 13.1 232 155-398 126-369 (1005)
235 KOG2611 Neurochondrin/leucine- 94.4 5.2 0.00011 38.6 18.0 131 33-167 14-161 (698)
236 KOG1525 Sister chromatid cohes 94.0 3.2 6.8E-05 45.9 17.1 148 242-400 259-406 (1266)
237 PF11707 Npa1: Ribosome 60S bi 94.0 5.6 0.00012 37.5 21.9 157 244-400 58-238 (330)
238 KOG2025 Chromosome condensatio 94.0 8 0.00017 39.3 29.9 205 30-269 85-292 (892)
239 PF08506 Cse1: Cse1; InterPro 93.9 4.4 9.6E-05 38.7 16.3 147 238-394 206-370 (370)
240 KOG2999 Regulator of Rac1, req 93.9 1.8 3.9E-05 42.3 13.3 156 118-274 85-245 (713)
241 PF06371 Drf_GBD: Diaphanous G 93.8 1.1 2.3E-05 38.3 11.2 111 73-187 66-186 (187)
242 KOG2137 Protein kinase [Signal 93.8 5 0.00011 40.8 16.7 175 197-383 346-521 (700)
243 PF03378 CAS_CSE1: CAS/CSE pro 93.7 4.1 8.9E-05 39.9 16.1 276 74-357 27-325 (435)
244 KOG1992 Nuclear export recepto 93.7 9.8 0.00021 39.4 22.5 306 70-380 358-705 (960)
245 PF10363 DUF2435: Protein of u 93.6 0.31 6.6E-06 35.9 6.2 85 30-126 3-87 (92)
246 PF13251 DUF4042: Domain of un 93.5 1.3 2.9E-05 37.3 10.7 141 216-357 2-175 (182)
247 PF04063 DUF383: Domain of unk 93.5 0.75 1.6E-05 39.2 9.3 125 211-339 6-159 (192)
248 PF11865 DUF3385: Domain of un 93.4 0.82 1.8E-05 37.8 9.2 35 284-318 10-44 (160)
249 COG5209 RCD1 Uncharacterized p 93.3 0.55 1.2E-05 40.1 7.9 147 42-189 111-269 (315)
250 PF12530 DUF3730: Protein of u 92.8 6.7 0.00015 34.9 17.1 138 161-314 3-151 (234)
251 PF03378 CAS_CSE1: CAS/CSE pro 92.7 8.4 0.00018 37.8 16.4 263 128-401 42-326 (435)
252 PF12830 Nipped-B_C: Sister ch 92.7 4.9 0.00011 34.3 13.3 147 30-189 8-168 (187)
253 PF08167 RIX1: rRNA processing 92.6 0.79 1.7E-05 38.2 8.2 115 242-358 25-145 (165)
254 COG5209 RCD1 Uncharacterized p 92.5 1.2 2.7E-05 38.1 9.0 98 304-402 119-221 (315)
255 smart00638 LPD_N Lipoprotein N 92.5 4.1 8.9E-05 41.9 15.0 160 117-305 394-569 (574)
256 PF04063 DUF383: Domain of unk 92.5 1.7 3.6E-05 37.1 10.0 105 252-358 5-134 (192)
257 PF12231 Rif1_N: Rap1-interact 92.5 10 0.00023 36.4 19.3 267 129-400 59-353 (372)
258 KOG2933 Uncharacterized conser 92.5 0.55 1.2E-05 42.3 7.2 144 244-401 90-236 (334)
259 KOG0413 Uncharacterized conser 92.4 16 0.00035 38.7 18.0 127 130-271 945-1073(1529)
260 KOG2933 Uncharacterized conser 92.4 1.2 2.7E-05 40.2 9.3 145 199-356 87-234 (334)
261 PLN03076 ARF guanine nucleotid 92.4 15 0.00032 42.7 19.6 266 127-401 1148-1491(1780)
262 KOG0891 DNA-dependent protein 92.4 2.3 5E-05 49.9 13.6 265 39-315 490-764 (2341)
263 KOG2137 Protein kinase [Signal 92.3 3.9 8.5E-05 41.5 13.5 171 30-213 349-521 (700)
264 cd03567 VHS_GGA VHS domain fam 92.2 0.7 1.5E-05 37.0 7.0 73 328-400 39-117 (139)
265 PF08324 PUL: PUL domain; Int 92.1 2.3 5E-05 38.8 11.3 157 75-234 65-236 (268)
266 cd03572 ENTH_epsin_related ENT 92.0 2.7 5.8E-05 32.7 9.7 95 344-455 18-121 (122)
267 PLN03076 ARF guanine nucleotid 92.0 4.7 0.0001 46.5 15.4 267 84-358 1148-1491(1780)
268 PF08506 Cse1: Cse1; InterPro 91.9 12 0.00027 35.8 18.5 132 299-448 225-370 (370)
269 PF10363 DUF2435: Protein of u 91.7 0.72 1.6E-05 34.0 6.1 77 286-365 5-81 (92)
270 PF14726 RTTN_N: Rotatin, an a 91.7 1.5 3.3E-05 32.6 7.7 70 368-450 28-97 (98)
271 cd03569 VHS_Hrs_Vps27p VHS dom 91.7 0.7 1.5E-05 37.3 6.5 74 30-103 41-114 (142)
272 PF14225 MOR2-PAG1_C: Cell mor 91.6 10 0.00022 34.3 16.7 175 74-270 65-253 (262)
273 KOG1822 Uncharacterized conser 91.3 32 0.0007 39.5 21.5 236 70-314 873-1127(2067)
274 cd03568 VHS_STAM VHS domain fa 91.3 1.1 2.3E-05 36.3 7.2 76 371-457 38-114 (144)
275 cd03568 VHS_STAM VHS domain fa 91.0 1.5 3.3E-05 35.4 7.9 72 328-399 38-110 (144)
276 PF01347 Vitellogenin_N: Lipop 91.0 2.8 6E-05 43.6 11.9 172 200-402 395-589 (618)
277 KOG1788 Uncharacterized conser 90.7 27 0.00058 37.6 20.5 65 118-183 468-533 (2799)
278 cd03569 VHS_Hrs_Vps27p VHS dom 90.7 1.4 3.1E-05 35.5 7.5 77 371-458 42-119 (142)
279 KOG1992 Nuclear export recepto 90.6 24 0.00051 36.8 26.4 400 33-457 40-531 (960)
280 smart00288 VHS Domain present 90.5 1.1 2.3E-05 35.8 6.5 74 30-103 37-111 (133)
281 COG5218 YCG1 Chromosome conden 90.4 2.8 6E-05 41.5 10.1 103 72-181 90-192 (885)
282 smart00638 LPD_N Lipoprotein N 90.3 16 0.00034 37.7 16.6 136 199-354 392-543 (574)
283 PF08167 RIX1: rRNA processing 90.0 7.1 0.00015 32.5 11.3 113 73-191 25-146 (165)
284 cd03561 VHS VHS domain family; 89.9 1.9 4E-05 34.5 7.5 74 30-103 37-112 (133)
285 PF13001 Ecm29: Proteasome sta 89.7 24 0.00053 35.5 23.6 161 285-457 320-492 (501)
286 PF04388 Hamartin: Hamartin pr 89.2 10 0.00022 39.6 13.9 158 30-209 4-161 (668)
287 cd03567 VHS_GGA VHS domain fam 89.0 1.8 3.8E-05 34.8 6.6 74 30-103 38-116 (139)
288 PF12726 SEN1_N: SEN1 N termin 88.9 35 0.00076 36.3 25.3 116 328-457 442-557 (727)
289 cd03561 VHS VHS domain family; 88.9 3.8 8.2E-05 32.7 8.6 75 328-402 38-115 (133)
290 cd03572 ENTH_epsin_related ENT 88.5 4.6 0.0001 31.4 8.4 87 308-399 24-119 (122)
291 PF12231 Rif1_N: Rap1-interact 88.3 25 0.00054 33.8 23.2 220 172-400 59-304 (372)
292 PF10521 DUF2454: Protein of u 87.8 6.4 0.00014 36.2 10.4 139 73-212 119-277 (282)
293 KOG1410 Nuclear transport rece 87.7 35 0.00076 34.8 20.3 270 30-313 5-333 (1082)
294 smart00288 VHS Domain present 87.3 2.7 5.9E-05 33.5 6.8 80 371-461 38-119 (133)
295 PF12463 DUF3689: Protein of u 87.2 24 0.00051 32.6 13.4 105 300-404 47-178 (303)
296 KOG1988 Uncharacterized conser 86.7 45 0.00097 35.1 16.0 277 1-314 1-281 (970)
297 PF12830 Nipped-B_C: Sister ch 86.5 19 0.00042 30.6 13.1 72 73-150 8-79 (187)
298 KOG1848 Uncharacterized conser 86.2 56 0.0012 36.5 17.0 269 172-458 855-1137(1610)
299 PF12074 DUF3554: Domain of un 86.0 6.1 0.00013 37.5 9.7 217 70-295 19-255 (339)
300 KOG1832 HIV-1 Vpr-binding prot 85.9 19 0.00042 37.8 13.0 309 42-358 365-775 (1516)
301 KOG1822 Uncharacterized conser 85.8 76 0.0016 36.8 18.5 273 118-398 878-1188(2067)
302 PF04869 Uso1_p115_head: Uso1 85.8 27 0.00059 32.5 13.3 172 255-432 51-261 (312)
303 PF12031 DUF3518: Domain of un 85.6 2.8 6.1E-05 36.6 6.3 85 257-342 139-231 (257)
304 PF14726 RTTN_N: Rotatin, an a 85.3 10 0.00022 28.2 8.3 93 45-140 2-95 (98)
305 KOG2199 Signal transducing ada 85.1 10 0.00022 35.6 9.8 72 328-399 46-118 (462)
306 KOG0392 SNF2 family DNA-depend 84.8 10 0.00023 41.2 11.0 236 30-274 77-328 (1549)
307 cd03565 VHS_Tom1 VHS domain fa 84.7 19 0.00042 29.0 10.5 99 339-458 17-120 (141)
308 PF13001 Ecm29: Proteasome sta 84.7 18 0.00038 36.5 12.5 172 171-356 249-443 (501)
309 PF14225 MOR2-PAG1_C: Cell mor 84.2 32 0.00069 31.1 16.5 165 130-314 76-254 (262)
310 KOG1788 Uncharacterized conser 83.5 72 0.0016 34.7 20.3 403 39-460 476-944 (2799)
311 PF12726 SEN1_N: SEN1 N termin 83.5 29 0.00063 36.9 14.1 143 245-401 444-587 (727)
312 PF12031 DUF3518: Domain of un 83.3 4.5 9.7E-05 35.4 6.5 79 89-168 139-226 (257)
313 PF10274 ParcG: Parkin co-regu 83.2 27 0.00058 29.5 11.0 74 242-317 38-112 (183)
314 PF00790 VHS: VHS domain; Int 82.7 1.6 3.5E-05 35.2 3.6 74 30-103 42-118 (140)
315 PF00790 VHS: VHS domain; Int 82.5 4.4 9.6E-05 32.6 6.1 76 371-457 43-122 (140)
316 KOG0889 Histone acetyltransfer 82.3 73 0.0016 39.4 17.1 318 73-398 984-1345(3550)
317 KOG4464 Signaling protein RIC- 82.3 48 0.001 31.7 20.2 154 162-315 49-232 (532)
318 PF10521 DUF2454: Protein of u 81.9 14 0.00031 33.9 9.9 74 328-401 120-205 (282)
319 PF10274 ParcG: Parkin co-regu 80.5 34 0.00074 28.9 11.1 71 284-356 38-109 (183)
320 KOG2005 26S proteasome regulat 79.9 76 0.0016 32.5 15.9 286 31-358 416-706 (878)
321 KOG2229 Protein required for a 79.9 24 0.00052 34.5 10.6 142 284-447 16-160 (616)
322 PF04064 DUF384: Domain of unk 79.7 11 0.00024 24.8 6.0 45 416-460 11-56 (58)
323 PF14631 FancD2: Fanconi anaem 79.6 1.2E+02 0.0027 34.9 17.6 108 242-356 431-542 (1426)
324 PF08767 CRM1_C: CRM1 C termin 79.5 55 0.0012 30.7 13.5 182 257-454 42-245 (319)
325 PF12074 DUF3554: Domain of un 79.4 58 0.0013 30.9 17.1 213 132-358 3-237 (339)
326 PF06685 DUF1186: Protein of u 78.8 48 0.001 29.6 13.8 124 16-166 17-161 (249)
327 PF08324 PUL: PUL domain; Int 78.4 5.8 0.00013 36.1 6.2 108 212-320 122-237 (268)
328 KOG0891 DNA-dependent protein 78.4 21 0.00045 42.6 11.4 230 121-358 486-721 (2341)
329 KOG4464 Signaling protein RIC- 78.2 65 0.0014 30.9 12.5 156 243-400 46-229 (532)
330 cd00197 VHS_ENTH_ANTH VHS, ENT 78.0 17 0.00037 28.0 7.8 70 371-451 38-113 (115)
331 KOG2213 Apoptosis inhibitor 5/ 76.7 71 0.0015 30.4 17.6 131 129-271 37-180 (460)
332 KOG2199 Signal transducing ada 76.6 7.1 0.00015 36.6 5.9 81 370-461 45-126 (462)
333 cd03565 VHS_Tom1 VHS domain fa 74.5 31 0.00067 27.8 8.6 73 328-400 39-116 (141)
334 PF08389 Xpo1: Exportin 1-like 74.1 20 0.00043 28.8 7.8 141 89-266 3-148 (148)
335 PLN03205 ATR interacting prote 73.9 84 0.0018 29.9 12.3 162 197-359 320-519 (652)
336 KOG1848 Uncharacterized conser 73.8 1.5E+02 0.0032 33.5 15.2 97 127-228 853-957 (1610)
337 KOG2038 CAATT-binding transcri 73.7 1.2E+02 0.0026 31.7 17.3 149 30-189 230-410 (988)
338 cd00197 VHS_ENTH_ANTH VHS, ENT 72.4 20 0.00043 27.6 6.9 73 30-102 37-114 (115)
339 PF11791 Aconitase_B_N: Aconit 72.0 31 0.00066 27.9 7.7 101 201-314 23-123 (154)
340 KOG0392 SNF2 family DNA-depend 71.1 69 0.0015 35.5 12.1 244 199-459 76-331 (1549)
341 KOG2149 Uncharacterized conser 69.4 45 0.00098 31.7 9.4 113 285-401 59-172 (393)
342 PF04499 SAPS: SIT4 phosphatas 68.9 31 0.00068 34.3 8.9 84 318-401 53-150 (475)
343 PF11229 DUF3028: Protein of u 68.4 1.3E+02 0.0028 29.9 15.6 228 159-397 98-351 (589)
344 cd08050 TAF6 TATA Binding Prot 68.3 52 0.0011 31.2 9.9 112 199-312 209-338 (343)
345 PF04388 Hamartin: Hamartin pr 67.9 80 0.0017 33.2 11.9 81 255-336 81-161 (668)
346 KOG1832 HIV-1 Vpr-binding prot 67.5 39 0.00085 35.7 9.2 168 64-242 592-785 (1516)
347 PF08389 Xpo1: Exportin 1-like 67.1 23 0.0005 28.5 6.7 125 175-309 4-148 (148)
348 KOG0301 Phospholipase A2-activ 66.2 1.6E+02 0.0036 30.2 14.7 163 209-380 553-726 (745)
349 cd08050 TAF6 TATA Binding Prot 66.1 1E+02 0.0022 29.3 11.4 110 159-269 211-338 (343)
350 KOG2149 Uncharacterized conser 66.1 71 0.0015 30.5 10.0 114 201-316 59-172 (393)
351 PF04821 TIMELESS: Timeless pr 65.9 73 0.0016 29.0 10.1 74 383-456 133-211 (266)
352 PF12783 Sec7_N: Guanine nucle 64.8 66 0.0014 26.7 9.0 108 44-155 36-156 (168)
353 PF09324 DUF1981: Domain of un 64.6 14 0.00031 26.7 4.3 65 157-225 16-84 (86)
354 PF12054 DUF3535: Domain of un 64.4 1.2E+02 0.0027 29.9 12.0 78 45-127 102-179 (441)
355 KOG2011 Sister chromatid cohes 63.6 1.5E+02 0.0032 32.6 12.8 142 294-457 297-440 (1048)
356 KOG0301 Phospholipase A2-activ 63.5 1.8E+02 0.004 29.9 16.1 161 88-253 558-727 (745)
357 KOG4524 Uncharacterized conser 63.4 2.2E+02 0.0048 30.8 16.6 94 284-380 803-899 (1014)
358 PF08767 CRM1_C: CRM1 C termin 62.8 1.4E+02 0.0029 28.1 14.9 185 215-402 42-247 (319)
359 KOG1087 Cytosolic sorting prot 62.7 42 0.00092 33.1 8.3 69 328-396 39-109 (470)
360 KOG1851 Uncharacterized conser 62.5 2.9E+02 0.0063 31.8 18.7 153 286-457 1528-1682(1710)
361 KOG2073 SAP family cell cycle 62.3 2.1E+02 0.0046 30.8 13.6 40 150-189 182-221 (838)
362 smart00802 UME Domain in UVSB 62.2 48 0.001 25.2 6.8 80 284-368 11-95 (107)
363 PF01417 ENTH: ENTH domain; I 62.1 72 0.0016 24.9 8.3 100 338-455 14-123 (125)
364 PF06685 DUF1186: Protein of u 61.9 1.2E+02 0.0026 27.2 14.8 101 115-227 72-181 (249)
365 PF08064 UME: UME (NUC010) dom 61.8 48 0.001 25.2 6.9 80 284-368 11-95 (107)
366 PF04499 SAPS: SIT4 phosphatas 61.4 1.7E+02 0.0038 29.2 12.4 95 360-454 52-149 (475)
367 PF04869 Uso1_p115_head: Uso1 60.4 1.5E+02 0.0032 27.7 14.4 150 298-459 51-237 (312)
368 KOG2005 26S proteasome regulat 60.3 2.1E+02 0.0046 29.5 15.3 76 71-149 46-129 (878)
369 PLN03205 ATR interacting prote 60.1 1.5E+02 0.0033 28.3 10.8 110 32-143 325-444 (652)
370 KOG2073 SAP family cell cycle 59.9 2.5E+02 0.0054 30.2 15.3 179 198-383 188-378 (838)
371 KOG2085 Serine/threonine prote 59.1 1.7E+02 0.0038 28.1 12.2 59 87-145 146-206 (457)
372 PF06012 DUF908: Domain of Unk 58.7 46 0.00099 31.4 7.7 77 46-124 238-324 (329)
373 smart00509 TFS2N Domain in the 58.1 49 0.0011 23.2 5.9 34 417-450 35-68 (75)
374 PF08216 CTNNBL: Catenin-beta- 57.3 13 0.00029 28.1 3.1 43 91-134 63-105 (108)
375 KOG2038 CAATT-binding transcri 56.8 2.6E+02 0.0057 29.5 21.8 102 117-228 305-408 (988)
376 PF12783 Sec7_N: Guanine nucle 56.6 1.1E+02 0.0025 25.3 9.7 79 236-315 67-147 (168)
377 PF08711 Med26: TFIIS helical 56.5 31 0.00067 22.1 4.4 34 417-450 13-47 (53)
378 KOG2140 Uncharacterized conser 55.6 1.4E+02 0.003 29.8 10.1 63 327-395 238-300 (739)
379 PF09758 FPL: Uncharacterised 55.6 72 0.0016 25.9 7.1 123 105-227 15-147 (149)
380 PF04821 TIMELESS: Timeless pr 54.6 1.7E+02 0.0037 26.6 15.6 63 27-103 10-72 (266)
381 PF09758 FPL: Uncharacterised 54.4 8.2 0.00018 31.2 1.7 125 273-397 15-147 (149)
382 PF09324 DUF1981: Domain of un 53.7 43 0.00093 24.3 5.2 67 281-352 14-84 (86)
383 KOG2011 Sister chromatid cohes 53.6 1.6E+02 0.0034 32.4 11.0 137 82-227 296-433 (1048)
384 PF08713 DNA_alkylation: DNA a 52.6 1.5E+02 0.0033 25.5 11.2 141 76-241 54-196 (213)
385 KOG2676 Uncharacterized conser 52.5 19 0.0004 33.5 3.7 63 94-156 376-440 (478)
386 KOG0803 Predicted E3 ubiquitin 50.2 4.5E+02 0.0097 30.2 16.7 198 31-232 42-266 (1312)
387 cd00183 TFIIS_I N-terminal dom 49.7 76 0.0017 22.3 5.8 34 417-450 37-70 (76)
388 KOG2085 Serine/threonine prote 49.4 2.3E+02 0.0051 27.3 10.3 59 66-126 170-228 (457)
389 KOG1087 Cytosolic sorting prot 48.2 46 0.001 32.9 5.9 73 30-102 38-111 (470)
390 smart00567 EZ_HEAT E-Z type HE 47.9 34 0.00073 18.6 3.1 13 300-312 2-14 (30)
391 PF06012 DUF908: Domain of Unk 47.7 91 0.002 29.4 7.8 65 90-155 238-307 (329)
392 PF12765 Cohesin_HEAT: HEAT re 47.6 12 0.00026 22.7 1.3 25 242-266 18-42 (42)
393 PF12397 U3snoRNP10: U3 small 46.1 1.4E+02 0.003 23.1 8.9 70 74-147 7-76 (121)
394 PF03130 HEAT_PBS: PBS lyase H 45.9 24 0.00052 18.9 2.2 14 301-314 1-14 (27)
395 COG5537 IRR1 Cohesin [Cell div 45.0 3.5E+02 0.0075 27.7 11.1 134 128-271 287-422 (740)
396 KOG2549 Transcription initiati 44.9 3.4E+02 0.0075 27.3 11.4 144 32-188 209-370 (576)
397 KOG1410 Nuclear transport rece 44.6 3.9E+02 0.0084 27.9 20.4 230 160-401 7-286 (1082)
398 PF12463 DUF3689: Protein of u 43.8 2.7E+02 0.0059 25.9 12.4 103 174-276 47-178 (303)
399 PF11791 Aconitase_B_N: Aconit 43.6 87 0.0019 25.4 5.8 47 90-147 79-125 (154)
400 KOG4524 Uncharacterized conser 41.2 1.1E+02 0.0023 33.0 7.5 97 198-295 801-900 (1014)
401 PF08713 DNA_alkylation: DNA a 40.8 59 0.0013 28.2 5.2 77 242-326 120-196 (213)
402 PF14666 RICTOR_M: Rapamycin-i 40.7 2.6E+02 0.0056 24.7 12.6 129 88-228 78-224 (226)
403 PF08216 CTNNBL: Catenin-beta- 40.4 42 0.00091 25.5 3.4 41 303-344 64-104 (108)
404 KOG2549 Transcription initiati 38.8 4.3E+02 0.0093 26.7 12.9 141 119-270 210-369 (576)
405 KOG1924 RhoA GTPase effector D 37.6 5.3E+02 0.011 27.4 13.1 143 300-449 207-360 (1102)
406 KOG0803 Predicted E3 ubiquitin 36.7 7.1E+02 0.015 28.7 14.3 111 244-356 43-153 (1312)
407 PF13925 Katanin_con80: con80 36.7 2.5E+02 0.0053 23.3 8.0 74 157-231 27-100 (164)
408 COG5537 IRR1 Cohesin [Cell div 36.7 4.9E+02 0.011 26.7 12.5 105 79-189 281-387 (740)
409 KOG2213 Apoptosis inhibitor 5/ 36.0 4.1E+02 0.0088 25.6 16.9 249 30-294 25-289 (460)
410 PF01365 RYDR_ITPR: RIH domain 35.8 93 0.002 26.9 5.6 98 111-211 38-153 (207)
411 KOG2021 Nuclear mRNA export fa 35.6 5.6E+02 0.012 27.2 23.9 61 42-108 205-265 (980)
412 PF12397 U3snoRNP10: U3 small 35.4 2.1E+02 0.0045 22.1 8.6 66 30-103 6-74 (121)
413 PF14663 RasGEF_N_2: Rapamycin 34.0 97 0.0021 23.9 4.7 38 117-155 9-46 (115)
414 PF14631 FancD2: Fanconi anaem 33.3 1.7E+02 0.0036 33.9 8.1 128 169-303 445-572 (1426)
415 PF10257 RAI16-like: Retinoic 33.1 4.4E+02 0.0095 25.2 11.5 130 236-368 3-169 (353)
416 PF05953 Allatostatin: Allatos 33.1 26 0.00056 14.5 0.8 6 483-488 4-9 (11)
417 PF14666 RICTOR_M: Rapamycin-i 32.8 3.5E+02 0.0076 23.9 12.9 130 44-188 78-225 (226)
418 COG5095 TAF6 Transcription ini 32.7 2.9E+02 0.0064 25.4 7.9 131 88-229 212-359 (450)
419 PRK14051 negative regulator Gr 31.6 24 0.00051 26.2 0.9 26 459-487 59-86 (123)
420 KOG0889 Histone acetyltransfer 31.4 1.3E+03 0.027 29.9 21.4 296 31-333 985-1325(3550)
421 PF07539 DRIM: Down-regulated 31.2 2.5E+02 0.0055 22.6 6.8 84 114-210 15-98 (141)
422 PF01365 RYDR_ITPR: RIH domain 31.1 1.8E+02 0.0039 25.1 6.6 98 299-402 75-172 (207)
423 PF07571 DUF1546: Protein of u 29.3 2.3E+02 0.005 20.8 5.9 57 171-227 18-76 (92)
424 smart00802 UME Domain in UVSB 29.1 1.8E+02 0.0039 22.1 5.3 69 73-146 11-84 (107)
425 KOG4231 Intracellular membrane 28.6 1E+02 0.0022 30.5 4.7 70 244-314 330-399 (763)
426 PF14663 RasGEF_N_2: Rapamycin 28.4 2.8E+02 0.006 21.4 9.6 103 328-455 9-112 (115)
427 PF07923 N1221: N1221-like pro 27.6 78 0.0017 29.3 3.8 54 327-380 60-126 (293)
428 KOG2022 Nuclear transport rece 27.1 8.4E+02 0.018 26.5 24.5 137 214-361 481-624 (982)
429 KOG1988 Uncharacterized conser 26.5 8.4E+02 0.018 26.3 15.4 167 174-358 39-208 (970)
430 COG5095 TAF6 Transcription ini 26.2 5.3E+02 0.011 23.9 12.0 141 162-313 201-358 (450)
431 PF08064 UME: UME (NUC010) dom 26.2 2.9E+02 0.0063 20.9 6.4 71 327-403 11-87 (107)
432 PF05997 Nop52: Nucleolar prot 26.1 3.2E+02 0.007 23.9 7.2 68 34-103 4-72 (217)
433 cd06561 AlkD_like A new struct 25.9 1.8E+02 0.0039 24.7 5.7 74 245-325 108-181 (197)
434 cd03562 CID CID (CTD-Interacti 25.5 3E+02 0.0066 20.9 7.2 88 171-267 17-104 (114)
435 KOG2229 Protein required for a 25.5 7E+02 0.015 25.1 19.9 339 73-453 16-381 (616)
436 cd03562 CID CID (CTD-Interacti 24.4 2.2E+02 0.0048 21.6 5.4 70 284-354 37-106 (114)
437 KOG2676 Uncharacterized conser 24.1 1E+02 0.0022 29.0 3.7 62 262-324 376-439 (478)
438 PF08623 TIP120: TATA-binding 24.0 4.3E+02 0.0093 22.1 8.1 76 214-294 41-116 (169)
439 PF07539 DRIM: Down-regulated 23.8 1.2E+02 0.0026 24.5 3.8 37 417-453 10-46 (141)
440 PF11229 DUF3028: Protein of u 23.8 7.6E+02 0.017 24.9 14.3 193 199-400 96-307 (589)
441 PRK09169 hypothetical protein; 23.7 1.4E+03 0.031 28.1 27.0 94 30-127 163-258 (2316)
442 PF08623 TIP120: TATA-binding 23.4 3.6E+02 0.0078 22.5 6.5 94 43-143 40-145 (169)
443 COG4291 Predicted membrane pro 23.2 1.5E+02 0.0031 25.4 4.1 40 442-487 135-174 (228)
444 PF04118 Dopey_N: Dopey, N-ter 23.1 6.2E+02 0.013 23.6 13.4 129 173-311 69-198 (307)
445 PF04064 DUF384: Domain of unk 22.8 2.4E+02 0.0052 18.7 5.0 50 98-148 2-52 (58)
446 PF15573 Imm27: Immunity prote 22.4 2.1E+02 0.0046 24.9 5.0 77 75-172 48-125 (259)
447 KOG2081 Nuclear transport regu 22.4 8.3E+02 0.018 24.8 21.5 269 73-356 153-457 (559)
448 PF13981 SopA: SopA-like centr 21.8 2.6E+02 0.0057 22.3 5.2 37 421-457 90-127 (135)
449 KOG1851 Uncharacterized conser 21.5 1.4E+03 0.029 27.0 14.4 67 379-457 1536-1602(1710)
No 1
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-62 Score=454.99 Aligned_cols=447 Identities=68% Similarity=1.076 Sum_probs=418.9
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
...+.++..+.|++++.+..+...++++++.+..++++.++..|++|.+++.|...+++.++..|+|+|.|+++++.+..
T Consensus 66 ~~~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T 145 (514)
T KOG0166|consen 66 SNLELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQT 145 (514)
T ss_pred hhhHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhc
Confidence 34778899999999999999999999999999888899999999999999999877669999999999999999999999
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
..+++.|.++.+++++.+++..+++.|.|+|+|++.+++.+|+.+++.|++.+|+.++..+....+.+++.|+|+|||++
T Consensus 146 ~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrg 225 (514)
T KOG0166|consen 146 KVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRG 225 (514)
T ss_pred cccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999996555568999999999999999
Q ss_pred C-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011328 190 K-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268 (488)
Q Consensus 190 ~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 268 (488)
. |.........++|.|..++.+.|+++...++|++++++.+..+.++.+++.|+++.|+.+|.+.++.++..|+++++|
T Consensus 226 k~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN 305 (514)
T KOG0166|consen 226 KNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN 305 (514)
T ss_pred CCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc
Confidence 8 888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHH
Q 011328 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA 348 (488)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 348 (488)
++.+++.+.+.+++.++++.|..++...+...+|++|+|+++|++.++.++++.+++.|++|.|+++|+..+.++|++|+
T Consensus 306 IvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAa 385 (514)
T KOG0166|consen 306 IVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAA 385 (514)
T ss_pred eeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHH
Confidence 99999999999999999999999999554778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHH
Q 011328 349 WAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK 428 (488)
Q Consensus 349 ~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 428 (488)
|+++|++..+++++..+|.+.|+++.|+++|.-.|.++...++.++.++++.++....... |++...++++||+++
T Consensus 386 waIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~----n~~~~~IEe~ggldk 461 (514)
T KOG0166|consen 386 WAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGT----NPLAIMIEEAGGLDK 461 (514)
T ss_pred HHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccc----cHHHHHHHHccChhH
Confidence 9999999999999999999999999999999999999999999999999999887654211 779999999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCC-CCCCCCCCCccccCCCCCCCCCCCCcC
Q 011328 429 IENLQSHDNTEIYEKAVKILETYWVEEDEDEP-LPPGDATQAGFGFAGNGLPVPSGGFNF 487 (488)
Q Consensus 429 L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (488)
++.|++|.|.+++++|..++++||..|+|++. .|+.. +|+|.+++ |+|+|||
T Consensus 462 iE~LQ~hen~~Iy~~A~~II~~yf~~e~~~~~~~~~~~----~~~~~~~~---~~~~f~f 514 (514)
T KOG0166|consen 462 IENLQSHENEEIYKKAYKIIDTYFSEEDDEDDQQPTTS----QFTFQVQA---PDGGFNF 514 (514)
T ss_pred HHHhhccccHHHHHHHHHHHHHhcCCCccccccccccc----ccccCCCC---CCCCCCC
Confidence 99999999999999999999999999855443 34333 89988884 9999998
No 2
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=6.3e-60 Score=406.80 Aligned_cols=441 Identities=57% Similarity=0.907 Sum_probs=406.7
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
+-+|.+.+.|.|+|.+.+..|..-++++++.+..++++.+++.|++|.+++++.+....-.+..|+|+|.|+++++....
T Consensus 71 ~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT 150 (526)
T COG5064 71 SELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT 150 (526)
T ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce
Confidence 46799999999999999999999999999999999999999999999999999655436789999999999999888888
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccc-ccHhHHHHHHHHHHHhhc
Q 011328 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~L~~l~~ 188 (488)
..+++.|.+|.++++|.+.+.++++.+.|+|+|++.+++.+|+.++..|++++++.++..+ .+.++.+++.|+|+|||+
T Consensus 151 kvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR 230 (526)
T COG5064 151 KVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR 230 (526)
T ss_pred EEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC
Confidence 8899999999999999999999999999999999999999999999999999999999533 245889999999999999
Q ss_pred CC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011328 189 GK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 267 (488)
Q Consensus 189 ~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~ 267 (488)
+. |...-......+|.|.+++.+.|+++...|+|++++++..+.+.++.+++.|+.+.|+++|.+++..++..|++.++
T Consensus 231 GknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vG 310 (526)
T COG5064 231 GKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVG 310 (526)
T ss_pred CCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhc
Confidence 98 77777788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHH
Q 011328 268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA 347 (488)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a 347 (488)
|+..+++.+.+.++..|+++.+..+|.++ ...+|++|||+++|+..++.++++.+++.+++|.|+.+|...+..++++|
T Consensus 311 NIVTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEA 389 (526)
T COG5064 311 NIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEA 389 (526)
T ss_pred CeeecCccceehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 88999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhcc
Q 011328 348 AWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEG 425 (488)
Q Consensus 348 ~~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 425 (488)
|||+.|..+++ .++..++|.++|++++|+++|+-.+.++.+.++.++.++++.++..... .....|.|...+++.||
T Consensus 390 CWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~-~~~nin~ya~~vE~Agg 468 (526)
T COG5064 390 CWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLR-YGKNINIYAVYVEKAGG 468 (526)
T ss_pred HHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHh-ccCCccHHHHHHHhccc
Confidence 99999999876 5789999999999999999999999999999999999999988766543 23456778999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCC-CCCCCCCCCccccC
Q 011328 426 LEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEP-LPPGDATQAGFGFA 474 (488)
Q Consensus 426 ~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~ 474 (488)
++.+..++++.|.+++.+|..++++||.+|+.=|| +|+-.- .-|+|.
T Consensus 469 md~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~vd~lapet~g--~tftfg 516 (526)
T COG5064 469 MDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDELAPETAG--NTFTFG 516 (526)
T ss_pred HHHHHHhhhccccHHHHHHHHHHHHHcccchhhhhcCccccC--CeeecC
Confidence 99999999999999999999999999999877777 555431 246663
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-43 Score=328.25 Aligned_cols=378 Identities=27% Similarity=0.428 Sum_probs=338.2
Q ss_pred CCCChhhHHHHhhhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHH
Q 011328 16 KPMDPMFFIIQLQLESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEA 94 (488)
Q Consensus 16 ~~~~~~~~~~~~~~~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a 94 (488)
.|++..+.. |.+|.++++|.. .++.+|+.|+|+|++++++. .+..+.+++.|.+|.+++++.+++ .+++++|
T Consensus 100 ppi~~vi~~-----G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQa 172 (514)
T KOG0166|consen 100 PPIDEVIQS-----GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQA 172 (514)
T ss_pred CCHHHHHHc-----CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHH
Confidence 456666666 999999999974 66999999999999999987 788899999999999999999999 9999999
Q ss_pred HHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCH-HHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccH
Q 011328 95 AWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL 173 (488)
Q Consensus 95 ~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 173 (488)
+|+|+|++.+++.+|+.+++.|+++.|+.++...+. .+.+++.|+|.|+|++....-..-.-..+++.|..++ .+.|+
T Consensus 173 vWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~ 251 (514)
T KOG0166|consen 173 VWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDE 251 (514)
T ss_pred HHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCH
Confidence 999999999999999999999999999999988665 7888999999999987622222222335788889998 89999
Q ss_pred hHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC
Q 011328 174 SMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR 252 (488)
Q Consensus 174 ~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 252 (488)
.+...|+|++++|+.+. +........|++|.++++|.+.+..++..|+++++|++.+++.+.+.+++.|+++.|..++.
T Consensus 252 ~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~ 331 (514)
T KOG0166|consen 252 EVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLS 331 (514)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhc
Confidence 99999999999999887 45556667899999999999999999999999999999999999999999999999999998
Q ss_pred -CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChH
Q 011328 253 -HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIG 330 (488)
Q Consensus 253 -~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~ 330 (488)
++.+.++..|+|+++|++.++..+++.+++.+++|.|+.+|++. +.++|++|+|+++|++. ++++++..+++.|+++
T Consensus 332 ~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~ 410 (514)
T KOG0166|consen 332 SSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIK 410 (514)
T ss_pred cCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCch
Confidence 56667999999999999999999999999999999999999999 89999999999999998 6899999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhccCCC-------HHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011328 331 PLVNLLLNAEFEIKKEAAWAISNATSGGS-------NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 331 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-------~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 402 (488)
.++.+|.-.|.++...++.+|.++...+. ......+-+.|+++.+..+-.+.+.++...|...+.+.+..++
T Consensus 411 plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e~ 489 (514)
T KOG0166|consen 411 PLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEED 489 (514)
T ss_pred hhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCCc
Confidence 99999988899999999999999986441 3345667788999999999999999999999999988876553
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=7.1e-43 Score=301.51 Aligned_cols=375 Identities=25% Similarity=0.361 Sum_probs=332.4
Q ss_pred cCCCCChhhHHHHhhhccHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHH
Q 011328 14 LLKPMDPMFFIIQLQLESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQF 92 (488)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~i~~l~~~L~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~ 92 (488)
...||+..+.. |.+|++++.|. .+..-.++.|+|+|.+++++. ..+.+.+++.|.+|.++++|.+++ .++++
T Consensus 103 ~~PPIq~VIda-----GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~e 175 (526)
T COG5064 103 TSPPIQPVIDA-----GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVRE 175 (526)
T ss_pred cCCCchhHHhc-----cccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHH
Confidence 45688999999 99999999995 566778999999999999987 677788889999999999999999 89999
Q ss_pred HHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCC--CHHHHHHHHHHHhhhhCCC--chhHHHHHhcCChHHHHHHhc
Q 011328 93 EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDS--PKCRDLVLSNGALMPLLAQFN 168 (488)
Q Consensus 93 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~--~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~l~~L~~ll~ 168 (488)
++.|+|+|++.+++.+|+.+++.|++++++.++.+. +..+.+++.|+|+|+|++. +.....+. ..++.|.+++
T Consensus 176 QavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~is--qalpiL~KLi- 252 (526)
T COG5064 176 QAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNIS--QALPILAKLI- 252 (526)
T ss_pred HHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHH--HHHHHHHHHH-
Confidence 999999999999999999999999999999998774 4588899999999999754 22222222 3678888888
Q ss_pred ccccHhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHH
Q 011328 169 EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 247 (488)
Q Consensus 169 ~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L 247 (488)
.+.|+++...|+|++++++... +........|..+.|+++|.+++..++..+++.++|+...++.+.+.+++.|.++.+
T Consensus 253 ys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~ 332 (526)
T COG5064 253 YSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAF 332 (526)
T ss_pred hhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHH
Confidence 8889999999999999999987 444555668999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC---CHHHHHHHH
Q 011328 248 VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG---NVNQIQAII 324 (488)
Q Consensus 248 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~ 324 (488)
..+|.++...+|..|||+++|++.++.++.+.+++.+++|.|+++|.+. +..+|++|||+++|..++ -|+.++.++
T Consensus 333 ~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv 411 (526)
T COG5064 333 RSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLV 411 (526)
T ss_pred HHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 999999999999999983 578899999
Q ss_pred HcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCC---------H-HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHH
Q 011328 325 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS---------N-EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGL 394 (488)
Q Consensus 325 ~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~---------~-~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L 394 (488)
+.|++.+|+.+|...+..+.+.++.++.|+...+. . ....++-+.|+++.+..+-++.+.++...|...+
T Consensus 412 ~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsII 491 (526)
T COG5064 412 SQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSII 491 (526)
T ss_pred HccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHH
Confidence 99999999999999888888899999999987652 2 3344455589999999999999999999888888
Q ss_pred HHHHH
Q 011328 395 ENILK 399 (488)
Q Consensus 395 ~~l~~ 399 (488)
..++.
T Consensus 492 e~fFg 496 (526)
T COG5064 492 EKFFG 496 (526)
T ss_pred HHHcc
Confidence 77763
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=9.8e-38 Score=332.64 Aligned_cols=415 Identities=20% Similarity=0.261 Sum_probs=338.4
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
|.+|.+++.|+++++..|..|+++|.+++... .+....+++.|++|.|+++|.+++++.+|+.|+++|.+++.++++.+
T Consensus 189 GaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r 267 (2102)
T PLN03200 189 GGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAK 267 (2102)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999999887764 56788899999999999999876547999999999999999999999
Q ss_pred HHHHhCCCHHHHHHhhCCCC---------HHHHHHHHHHHhhhhCCCch-----------hHHH----------------
Q 011328 110 RVVIDHGAVPIFVRLLSSPT---------DDVREQAVWALGNVAGDSPK-----------CRDL---------------- 153 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~~~~---------~~v~~~a~~~L~~l~~~~~~-----------~~~~---------------- 153 (488)
..+++.|+++.|++++.+++ ..++++|+|+|+|+|.+.+. .+..
T Consensus 268 ~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l 347 (2102)
T PLN03200 268 QAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMV 347 (2102)
T ss_pred HHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHh
Confidence 99999999999999998644 44699999999999985322 0000
Q ss_pred ----------------------------------------------------HHhcCChHHHHHHhcccccHhHHHHHHH
Q 011328 154 ----------------------------------------------------VLSNGALMPLLAQFNEHAKLSMLRNATW 181 (488)
Q Consensus 154 ----------------------------------------------------~~~~~~l~~L~~ll~~~~~~~v~~~a~~ 181 (488)
+.+.++++.|+.++ ...+.+++..++|
T Consensus 348 ~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL-~~~~~evQ~~Av~ 426 (2102)
T PLN03200 348 FDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLI-TMATADVQEELIR 426 (2102)
T ss_pred cCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhh-ccCCHHHHHHHHH
Confidence 00111222223333 3344678899999
Q ss_pred HHHHhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHh
Q 011328 182 TLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 260 (488)
Q Consensus 182 ~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~ 260 (488)
+|++++.+. .........+++|.|+++|.+++..++..+++++++++..+++....+++.|+++.|+++|.++++.+++
T Consensus 427 aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqe 506 (2102)
T PLN03200 427 ALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKE 506 (2102)
T ss_pred HHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHH
Confidence 999999876 4445556688999999999999999999999999999988887788899999999999999999999999
Q ss_pred HHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccc-------------------------------------------
Q 011328 261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY------------------------------------------- 297 (488)
Q Consensus 261 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~------------------------------------------- 297 (488)
.|+|+|+|++.+.+..+..+.+.|+++.|+++|+++.
T Consensus 507 eAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~ 586 (2102)
T PLN03200 507 DSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLD 586 (2102)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHH
Confidence 9999999999754433333334455555555555440
Q ss_pred -----------------------------------hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChh
Q 011328 298 -----------------------------------KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE 342 (488)
Q Consensus 298 -----------------------------------~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~ 342 (488)
+..+++.|+|+|.|++.++++.++.++..|++++++.++.+++.+
T Consensus 587 vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~ 666 (2102)
T PLN03200 587 VLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEA 666 (2102)
T ss_pred HHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChH
Confidence 444455555555555555555566677788999999999999999
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHh
Q 011328 343 IKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDD 422 (488)
Q Consensus 343 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 422 (488)
++++++|+|.+++.....+++..+.+.|++++|+++++.++.+++..++.+|.+++...+. ...+..
T Consensus 667 v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~-------------~~ei~~ 733 (2102)
T PLN03200 667 VATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEV-------------AAEALA 733 (2102)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchH-------------HHHHHh
Confidence 9999999999999887778888889999999999999999999999999999999988773 555777
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 011328 423 AEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDE 459 (488)
Q Consensus 423 ~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~ 459 (488)
.|++..|.+++.+.+++.++.|.+.|.++......+|
T Consensus 734 ~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~ 770 (2102)
T PLN03200 734 EDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDD 770 (2102)
T ss_pred cCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhH
Confidence 8999999999999999999999999998888776655
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1e-36 Score=324.90 Aligned_cols=416 Identities=19% Similarity=0.199 Sum_probs=368.3
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
+.++.|+.+|++.+.++|..++++|..++.++ .+..+.+.+.|++|.|+++|.+++ +.+|..|++++++++.++++.+
T Consensus 404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr 481 (2102)
T PLN03200 404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK 481 (2102)
T ss_pred cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence 77889999999999999999999999987765 678899999999999999999998 8999999999999999888999
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
..+++.|++|.|+++|++++..+++.|+|+|+|++.+++..+..+.+.|++++|+++| ++.+...+..++|+|.+++..
T Consensus 482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998877777787889999999999 667889999999999999743
Q ss_pred CCCCC--------------------------------------hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011328 190 KPQPL--------------------------------------FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 231 (488)
Q Consensus 190 ~~~~~--------------------------------------~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 231 (488)
..... .....++++.|++++++++..+++.|+++|.+++...
T Consensus 561 ~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~ 640 (2102)
T PLN03200 561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR 640 (2102)
T ss_pred cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 31110 0012478999999999999999999999999999998
Q ss_pred chhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch-hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHH
Q 011328 232 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM-QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 310 (488)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~ 310 (488)
.+..+.++..|+++.++.+|.+.+.+++..++++|++++.+... ++..+++.|+++.|+++|++. +.+++..|+.+|.
T Consensus 641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALa 719 (2102)
T PLN03200 641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALA 719 (2102)
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999975443 445668999999999999998 9999999999999
Q ss_pred HHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHH--HHHHHHCCChHHHHhhcCCCCHHHHH
Q 011328 311 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ--IKFLVSQGCIKPLCDLLNCPDPRIVT 388 (488)
Q Consensus 311 nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~--~~~l~~~~~i~~L~~ll~~~~~~v~~ 388 (488)
|++.. ++....+...|+++.|++++++++++.|+.|+++|.+++.....+. ..++...|.+..|+++|+..|.+...
T Consensus 720 nLl~~-~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~ 798 (2102)
T PLN03200 720 NLLSD-PEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSA 798 (2102)
T ss_pred HHHcC-chHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhh
Confidence 99987 4566777888999999999999999999999999999998875443 46777889999999999998887766
Q ss_pred H--HHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 011328 389 V--CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEE 455 (488)
Q Consensus 389 ~--al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 455 (488)
. ++.+|..+.+....... ..++|...++..++++.|.+...+.+|.++++|..+|+++..+.
T Consensus 799 ~~~al~~l~~l~~~~~~~~~-----~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~ 862 (2102)
T PLN03200 799 TSEALEALALLARTKGGANF-----SHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQ 862 (2102)
T ss_pred HHHHHHHHHHHHhhcccCCC-----CCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccC
Confidence 5 99999999886554432 35679999999999999988889999999999999999998753
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-31 Score=231.65 Aligned_cols=408 Identities=22% Similarity=0.232 Sum_probs=339.7
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328 29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
-+.+.+++..+++.++.++..+..++.+++-+. +..-.+++.+++..|+.-+..+. .++|..+..|+.+++. ..++
T Consensus 84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn~--enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT-~d~n 159 (550)
T KOG4224|consen 84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVNM--ENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLAT-FDSN 159 (550)
T ss_pred hhhhhHHHHHHhCcchhhhhhhhhhhccceecc--CCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhc-cccc
Confidence 366788899999999999999999999987653 44555667788888887777777 6999999999999999 5889
Q ss_pred hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328 109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 188 (488)
+..+...|++.++.++-++++..++.++..+|.++... .+.|+.++..|+++.|+.++ ++.|..++..++.++++++-
T Consensus 160 k~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs-~EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaV 237 (550)
T KOG4224|consen 160 KVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHS-RENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAV 237 (550)
T ss_pred hhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhh-hhhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhh
Confidence 99999999999999988889999999999999999744 45788999999999999999 89999999999999999998
Q ss_pred CCCCCChhhhhc--hHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHH
Q 011328 189 GKPQPLFEQTRP--ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 266 (488)
Q Consensus 189 ~~~~~~~~~~~~--~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L 266 (488)
.....+.....+ ++|.++.++.+++++++-.|..+|++++.....+ ..+++.|.+|.++++++++.-........|+
T Consensus 238 d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq-~eiv~ag~lP~lv~Llqs~~~plilasVaCI 316 (550)
T KOG4224|consen 238 DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQ-REIVEAGSLPLLVELLQSPMGPLILASVACI 316 (550)
T ss_pred hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhh-hHHHhcCCchHHHHHHhCcchhHHHHHHHHH
Confidence 765555555544 9999999999999999999999999999877544 5689999999999999998877888889999
Q ss_pred hHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHH
Q 011328 267 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE 346 (488)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~ 346 (488)
.|++-+. -..-.+.+.|++..|+++|...++.+++..|..+|.|++..+..+...+.+.|.+|.+..++.++...++.+
T Consensus 317 rnisihp-lNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqse 395 (550)
T KOG4224|consen 317 RNISIHP-LNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSE 395 (550)
T ss_pred hhccccc-CcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHH
Confidence 9998743 344456789999999999999877889999999999999988889999999999999999999999999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHH--hhc
Q 011328 347 AAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAID--DAE 424 (488)
Q Consensus 347 a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~--~~g 424 (488)
...++..++.+. ..+..+.+.|.++.|+.+..+.+.+++.++..+|.|+...-+.-.+ +.+... ..|
T Consensus 396 isac~a~Lal~d--~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~Yar---------viEawd~P~~g 464 (550)
T KOG4224|consen 396 ISACIAQLALND--NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYAR---------VIEAWDHPVQG 464 (550)
T ss_pred HHHHHHHHHhcc--ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHH---------HHHHhcCcchh
Confidence 999999998865 5678899999999999999999999999999999999865443211 122211 012
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 011328 425 GLEKIENLQSHDNTEIYEKAVKILETYWVEE 455 (488)
Q Consensus 425 ~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 455 (488)
.--.|.++..+..--++..+.+.+.++.++-
T Consensus 465 i~g~L~Rfl~S~~~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 465 IQGRLARFLASHELTFRHIARWTIQQLLEDH 495 (550)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 2334555555555555666666665555443
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-30 Score=226.91 Aligned_cols=364 Identities=21% Similarity=0.281 Sum_probs=319.1
Q ss_pred hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch
Q 011328 28 QLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 107 (488)
Q Consensus 28 ~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 107 (488)
+++++..|+..+.++.-++|..++.++.+++..+ +....+...|++.++.++-++.+ ..+|..+..+|.++.. +.+
T Consensus 124 ~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d--~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s~E 199 (550)
T KOG4224|consen 124 SLLGLDLLILQMMTDGVEVQCNAVGCITNLATFD--SNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-SRE 199 (550)
T ss_pred eccChHHHHHHhcCCCcEEEeeehhhhhhhhccc--cchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-hhh
Confidence 3588999999999999999999999999998764 56677889999999999888888 8999999999999998 899
Q ss_pred hhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcC--ChHHHHHHhcccccHhHHHHHHHHHHH
Q 011328 108 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG--ALMPLLAQFNEHAKLSMLRNATWTLSN 185 (488)
Q Consensus 108 ~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~l~~L~~ll~~~~~~~v~~~a~~~L~~ 185 (488)
+|..++..|++|.|+.++++.+++++..|..++++++-+.. .|+.+.+.+ .++.|+.++ ++.++.++-.|..+|.+
T Consensus 200 nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~-~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrn 277 (550)
T KOG4224|consen 200 NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR-ARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRN 277 (550)
T ss_pred hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH-HHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999987655 577777777 899999999 88899999999999999
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCC-cchHhHHHH
Q 011328 186 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS-PSVLIPALR 264 (488)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~ 264 (488)
++.+..........|.+|.++++++++..........|+.|++-++.+. ..+++.|++..|+.+|+..+ ++++-.|..
T Consensus 278 lasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe-~lI~dagfl~pLVrlL~~~dnEeiqchAvs 356 (550)
T KOG4224|consen 278 LASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNE-VLIADAGFLRPLVRLLRAGDNEEIQCHAVS 356 (550)
T ss_pred hcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcc-cceecccchhHHHHHHhcCCchhhhhhHHH
Confidence 9998877777788999999999999998888889999999999776543 55888999999999998865 569999999
Q ss_pred HHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 011328 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK 344 (488)
Q Consensus 265 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 344 (488)
+|++++..++.....+.+.|.++.+..++.+. .-.++.+...++..++.. +.....+.+.|++|.|+.++.+.+.+++
T Consensus 357 tLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~ 434 (550)
T KOG4224|consen 357 TLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEVR 434 (550)
T ss_pred HHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhhc
Confidence 99999998888889999999999999999998 888999999999999875 4556788999999999999999999999
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHH------CCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011328 345 KEAAWAISNATSGGSNEQIKFLVS------QGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 345 ~~a~~aL~~l~~~~~~~~~~~l~~------~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 402 (488)
.+|+.+|.|+++. .+....+++ .|.-..|.+.+.+.+..++..+.+.+..++....
T Consensus 435 gNaAaAL~Nlss~--v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 435 GNAAAALINLSSD--VEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred ccHHHHHHhhhhh--hHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999874 355555554 3556677888888777888888888887776543
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.95 E-value=4.3e-25 Score=218.59 Aligned_cols=380 Identities=19% Similarity=0.189 Sum_probs=316.1
Q ss_pred HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHH
Q 011328 44 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR 123 (488)
Q Consensus 44 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 123 (488)
..+...+.+.|.+++.. ......+.+.|+++.|+++|++++ .++...++.+|.+++. ..+++..+.+.|+++.|.+
T Consensus 263 eqLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~k 338 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLK 338 (708)
T ss_pred HHHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHH
Confidence 34444678889998764 467788889999999999999988 8999999999999999 7889999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHH
Q 011328 124 LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 203 (488)
Q Consensus 124 ~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 203 (488)
++.+++.+++..++++|.|++.+.. .|..+++.|.++.++.++. ++..+..++.+|.+++.....+.....++++|
T Consensus 339 Ll~s~~~~l~~~aLrlL~NLSfd~~-~R~~mV~~GlIPkLv~LL~---d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp 414 (708)
T PF05804_consen 339 LLPSENEDLVNVALRLLFNLSFDPE-LRSQMVSLGLIPKLVELLK---DPNFREVALKILYNLSMDDEARSMFAYTDCIP 414 (708)
T ss_pred HhcCCCHHHHHHHHHHHHHhCcCHH-HHHHHHHCCCcHHHHHHhC---CCchHHHHHHHHHHhccCHhhHHHHhhcchHH
Confidence 9999999999999999999998765 6899999999999999993 34566779999999999887666677788999
Q ss_pred HHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhh
Q 011328 204 ALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN 282 (488)
Q Consensus 204 ~l~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 282 (488)
.+++++.+ ++..+...++..+.|++.+.. ..+.+.+.++++.|++....... ...+..+.|++.+.+.....+.
T Consensus 415 ~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r-naqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~- 489 (708)
T PF05804_consen 415 QLMQMLLENSEEEVQLELIALLINLALNKR-NAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFV- 489 (708)
T ss_pred HHHHHHHhCCCccccHHHHHHHHHHhcCHH-HHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHH-
Confidence 99997654 567777788889999998775 44778888899999888655332 2346789999998754443332
Q ss_pred CCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCCH
Q 011328 283 HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSN 360 (488)
Q Consensus 283 ~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~ 360 (488)
+.+..|+.++..+.+++...+++.+|+|+...+.+..+.+-+.+++|.+.+.|..+ ++++..+++..++.++. ++
T Consensus 490 -~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~--d~ 566 (708)
T PF05804_consen 490 -DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS--DP 566 (708)
T ss_pred -HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC--CH
Confidence 47778888888776889999999999999886555555555789999999999876 56799999999999986 56
Q ss_pred HHHHHHHHCCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCH
Q 011328 361 EQIKFLVSQGCIKPLCDLLNC--PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT 438 (488)
Q Consensus 361 ~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~ 438 (488)
+.+..+.+.|+++.|+++++. .|.+++.+.+.++.+++...+. ....+.+.+....+.+++++.|+
T Consensus 567 ~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t------------r~~ll~~~~~~~ylidL~~d~N~ 634 (708)
T PF05804_consen 567 ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET------------REVLLKETEIPAYLIDLMHDKNA 634 (708)
T ss_pred HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH------------HHHHHhccchHHHHHHHhcCCCH
Confidence 888999999999999999984 5688999999999999988663 24556778999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 011328 439 EIYEKAVKILETY 451 (488)
Q Consensus 439 ~v~~~a~~~l~~~ 451 (488)
+|++.|..+|+-.
T Consensus 635 ~ir~~~d~~Ldii 647 (708)
T PF05804_consen 635 EIRKVCDNALDII 647 (708)
T ss_pred HHHHHHHHHHHHH
Confidence 9998888877543
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.94 E-value=3.1e-23 Score=205.50 Aligned_cols=363 Identities=18% Similarity=0.211 Sum_probs=304.4
Q ss_pred hhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc
Q 011328 27 LQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 106 (488)
Q Consensus 27 ~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~ 106 (488)
.+.+.++.|++.|.+++.++...++..|.++.-. .++...+.+.|+++.|.+++.+++ .+++..++++|.|++. ++
T Consensus 287 ~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf-d~ 362 (708)
T PF05804_consen 287 VNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF-DP 362 (708)
T ss_pred HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc-CH
Confidence 3449999999999999999999999999996543 577899999999999999999998 8999999999999999 89
Q ss_pred hhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHh
Q 011328 107 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 186 (488)
Q Consensus 107 ~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l 186 (488)
+.|..+++.|++|.|+.+|.+ +..+..++.+|++++.+.. .+..+...++++.+++++..++++.+...+++++.|+
T Consensus 363 ~~R~~mV~~GlIPkLv~LL~d--~~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNL 439 (708)
T PF05804_consen 363 ELRSQMVSLGLIPKLVELLKD--PNFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINL 439 (708)
T ss_pred HHHHHHHHCCCcHHHHHHhCC--CchHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHH
Confidence 999999999999999999976 4566779999999998664 6888888899999999886777777888889999999
Q ss_pred hcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHH
Q 011328 187 CRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRT 265 (488)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~ 265 (488)
+.+......+...++++.|++..-+.... ..+..++|++.+++.....+. +.+..|+.++.. ++++....++.+
T Consensus 440 a~~~rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGi 514 (708)
T PF05804_consen 440 ALNKRNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGI 514 (708)
T ss_pred hcCHHHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHH
Confidence 99987777777778888888776544332 245689999988754433333 567777777766 467889999999
Q ss_pred HhHhhcCCchhhHHHhhCCChHHHHHHhcccc-hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--Chh
Q 011328 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFE 342 (488)
Q Consensus 266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~ 342 (488)
|+|+...+......+.+.+++|.+.+.|..+. .+++..+++..++.++.. +.....+.+.|+++.|+.++... |.+
T Consensus 515 LaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d-~~~A~lL~~sgli~~Li~LL~~kqeDdE 593 (708)
T PF05804_consen 515 LANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD-PECAPLLAKSGLIPTLIELLNAKQEDDE 593 (708)
T ss_pred HHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC-HHHHHHHHhCChHHHHHHHHHhhCchHH
Confidence 99999866666666667899999999997542 457889999999998864 77788888999999999999876 788
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHH-HCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 011328 343 IKKEAAWAISNATSGGSNEQIKFLV-SQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAE 404 (488)
Q Consensus 343 v~~~a~~aL~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~ 404 (488)
+..+.+.++.++..+. +.+..+. +.+++..|++++++.+++++..|-.+|.-+...++..
T Consensus 594 ~VlQil~~f~~ll~h~--~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w 654 (708)
T PF05804_consen 594 IVLQILYVFYQLLFHE--ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEW 654 (708)
T ss_pred HHHHHHHHHHHHHcCh--HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHH
Confidence 9999999999999875 5555654 4799999999999999999999999999988887654
No 11
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.1e-19 Score=173.31 Aligned_cols=389 Identities=19% Similarity=0.276 Sum_probs=315.8
Q ss_pred ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328 30 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 30 ~~i~~l~~~L~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
+.+..|++.|+.+ |+..|++|+.-|+++++..+++....+.-..++|.|+.+|++..+.++...|+++|.+++.-.|..
T Consensus 167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 4678899999875 999999999999999988877777766677899999999999888999999999999999988999
Q ss_pred hHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011328 109 TRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 187 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~ 187 (488)
...+++.+.||.|+.-|.. +..++.++++.+|-.|++..+ ..++..|++...+..+ +--+..+++.|+.+..|+|
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~C 322 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCC 322 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999986655 889999999999999998876 3788999999999999 6678899999999999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc---CCchhHHHHHHhCCHHHHHHhcCCC----CcchHh
Q 011328 188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLRHP----SPSVLI 260 (488)
Q Consensus 188 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~---~~~~~~~~~~~~~~l~~L~~lL~~~----~~~v~~ 260 (488)
..-.......+...+|.|..+|...|.+..+.++-++..++. +.++..+.+...+++....+++.-. +..+..
T Consensus 323 ksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~ 402 (1051)
T KOG0168|consen 323 KSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYT 402 (1051)
T ss_pred hcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchh
Confidence 998888888899999999999999999999999999999884 4567778888999999999988653 234555
Q ss_pred HHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccc-------------hhhHHHHHH---------------------
Q 011328 261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-------------KKSIKKEAC--------------------- 306 (488)
Q Consensus 261 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~-------------~~~v~~~a~--------------------- 306 (488)
..++.+..++.+.+.....+.+.++...+..+|.... .+.-..+..
T Consensus 403 ~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~ 482 (1051)
T KOG0168|consen 403 GVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCS 482 (1051)
T ss_pred HHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhh
Confidence 6777888888887877777777788777777774421 000000000
Q ss_pred -------------------------------HHHHH----------------------HhcCCHHHHHHHHHcCChHHHH
Q 011328 307 -------------------------------WTISN----------------------ITAGNVNQIQAIIEAGIIGPLV 333 (488)
Q Consensus 307 -------------------------------~~L~n----------------------l~~~~~~~~~~l~~~~~l~~L~ 333 (488)
+.+.. +....++..+.+.. .++|.|+
T Consensus 483 ~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLv 561 (1051)
T KOG0168|consen 483 LIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLV 561 (1051)
T ss_pred hhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHH
Confidence 11110 00111233333333 3799999
Q ss_pred HHHhcC-ChhHHHHHHHHHHHhccCCCHHHHHHHHHC-CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCC
Q 011328 334 NLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQ-GCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTG 411 (488)
Q Consensus 334 ~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~ 411 (488)
+.+.+. ++.||..++.||..+....+.+.+..++.. ..-..+-.++.+.|..+..-|+....-|++.-+..
T Consensus 562 eVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~------- 634 (1051)
T KOG0168|consen 562 EVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDT------- 634 (1051)
T ss_pred HHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHH-------
Confidence 999887 999999999999999998888888777655 55566677899999999999999999888776644
Q ss_pred ccchHHHHHHhhccHHHHHHhhc
Q 011328 412 GVNLFAQAIDDAEGLEKIENLQS 434 (488)
Q Consensus 412 ~~~~~~~~l~~~g~~~~L~~l~~ 434 (488)
|...|++.|.+..+.+|..
T Consensus 635 ----F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 635 ----FSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred ----hhhhHhhhhHHHHHHHHhc
Confidence 7888999999999999976
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.83 E-value=2.7e-18 Score=166.51 Aligned_cols=366 Identities=20% Similarity=0.227 Sum_probs=286.1
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch--hH
Q 011328 74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK--CR 151 (488)
Q Consensus 74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~--~~ 151 (488)
-+|..+.+|.+.+ +.++..|+.-+..++.++.+.+..+.+.|+|+.|+.+|.+.+.+++..|+++|.||...... .+
T Consensus 234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 4677888999988 89999999999999999999999999999999999999999999999999999999976544 67
Q ss_pred HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC--------------ChhHH
Q 011328 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--------------DDEVL 217 (488)
Q Consensus 152 ~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~--------------~~~v~ 217 (488)
-.+.+.++++.+++++.+..|.++++.+..+|+||+.++ ..+.......+..|..-+-.+ +..+.
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence 788999999999999977789999999999999999984 444445566666666544311 35678
Q ss_pred HHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHhcCC------CCcchHhHHHHHHhHhhcCCch---------------
Q 011328 218 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTGDDM--------------- 275 (488)
Q Consensus 218 ~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~--------------- 275 (488)
..+..||+|++....+..+.+.+. |+++.|+..+++ .+....+.++.++.|+...-+.
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 899999999998776666666664 788998888753 3556677888888888753220
Q ss_pred ----------------hhHH----------------------HhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC-
Q 011328 276 ----------------QTQC----------------------IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN- 316 (488)
Q Consensus 276 ----------------~~~~----------------------~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~- 316 (488)
..+. +....++..-+.+|....+..+.+.++.+|-|++.+.
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 0000 1122344454555554447888999999999999842
Q ss_pred ---HHHHHHH-HHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC------HHH
Q 011328 317 ---VNQIQAI-IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD------PRI 386 (488)
Q Consensus 317 ---~~~~~~l-~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~------~~v 386 (488)
...+..+ .+..+++.+++++..+++.|...++.+|.|++.+. .. +.++.+++++.|++.|.... +++
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~--rn-k~ligk~a~~~lv~~Lp~~~~~~~~sedt 628 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI--RN-KELIGKYAIPDLVRCLPGSGPSTSLSEDT 628 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc--hh-hhhhhcchHHHHHHhCcCCCCCcCchHHH
Confidence 2233334 46789999999999999999999999999999864 33 34455899999999998543 578
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCC
Q 011328 387 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILETYWVEED 456 (488)
Q Consensus 387 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~-~~~~v~~~a~~~l~~~~~~~~ 456 (488)
...++..|.+++...... ...+-+.+++++|..+..+ .++++.+.|..++..+|.-.+
T Consensus 629 v~~vc~tl~niv~~~~~n------------Akdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e 687 (717)
T KOG1048|consen 629 VRAVCHTLNNIVRKNVLN------------AKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE 687 (717)
T ss_pred HHHHHHhHHHHHHHhHHH------------HHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 889999999998665543 4456678889999998644 578999999999999998744
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.81 E-value=1.2e-17 Score=162.04 Aligned_cols=365 Identities=21% Similarity=0.258 Sum_probs=282.7
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch--
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE-- 107 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~-- 107 (488)
-.+|..+..|.+.++.+|..|+..+..+.-.+ ++....+...|+|+.|+.+|.+.. .+++.+|+++|.|+..++..
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~ 310 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDS 310 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCcc
Confidence 35788899999999999999999998865544 676777788999999999999999 99999999999999986655
Q ss_pred hhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc-cc------------ccH
Q 011328 108 NTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-EH------------AKL 173 (488)
Q Consensus 108 ~~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~------------~~~ 173 (488)
++-.+.+.++++.++++|+. .+.++++....+|+||++.+ .++..++. ..+..|...+. .. .+.
T Consensus 311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~ 388 (717)
T KOG1048|consen 311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDS 388 (717)
T ss_pred cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccc
Confidence 88889999999999999997 89999999999999999874 34444443 45666655442 11 146
Q ss_pred hHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhc------cCChhHHHHHHHHHHHhccCCch------------
Q 011328 174 SMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIH------SNDDEVLTDACWALSYLSDGTND------------ 233 (488)
Q Consensus 174 ~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~l~~ll~------~~~~~v~~~al~~L~~l~~~~~~------------ 233 (488)
++..++..+|.|++... .........|.+..|+..++ ..|.+..+.++.++.|++..-..
T Consensus 389 ~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~ 468 (717)
T KOG1048|consen 389 TVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLAN 468 (717)
T ss_pred eeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhc
Confidence 78899999999999854 23344455788999988876 34778889999999998843210
Q ss_pred -------------------hHHH----------------------HHHhCCHHHHHHhc-CCCCcchHhHHHHHHhHhhc
Q 011328 234 -------------------KIQA----------------------VIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVT 271 (488)
Q Consensus 234 -------------------~~~~----------------------~~~~~~l~~L~~lL-~~~~~~v~~~a~~~L~~l~~ 271 (488)
..+. +....++..-..++ .+.++.+.+.+..+|-|++.
T Consensus 469 ~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA 548 (717)
T KOG1048|consen 469 IARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTA 548 (717)
T ss_pred ccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhc
Confidence 0000 11111333323333 33466788999999999998
Q ss_pred CCchh----hHHH-hhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC------C
Q 011328 272 GDDMQ----TQCI-INHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA------E 340 (488)
Q Consensus 272 ~~~~~----~~~~-~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~------~ 340 (488)
+.... +..+ .+..+++.++++|+.+ +..+...++.+|.|++.+ .. .+.++..++++.|++.|... +
T Consensus 549 ~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d-~r-nk~ligk~a~~~lv~~Lp~~~~~~~~s 625 (717)
T KOG1048|consen 549 GLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRD-IR-NKELIGKYAIPDLVRCLPGSGPSTSLS 625 (717)
T ss_pred cCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccC-ch-hhhhhhcchHHHHHHhCcCCCCCcCch
Confidence 76532 2233 4778999999999999 999999999999999986 33 34455678999999999865 3
Q ss_pred hhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhh
Q 011328 341 FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 341 ~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~ 402 (488)
.++...++.+|.++... +.+..+.+.+.+.++.|+.+.++. +++..+.+...|..+..+.+
T Consensus 626 edtv~~vc~tl~niv~~-~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e 687 (717)
T KOG1048|consen 626 EDTVRAVCHTLNNIVRK-NVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE 687 (717)
T ss_pred HHHHHHHHHhHHHHHHH-hHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 68889999999999864 578899999999999999998864 45888888888888887766
No 14
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.80 E-value=6.6e-16 Score=152.22 Aligned_cols=400 Identities=17% Similarity=0.173 Sum_probs=301.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011328 34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 113 (488)
Q Consensus 34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 113 (488)
.+..+|.+.+.+....++.+|..++.... ...+ ..+..+.|...|.+++ +.+|..+++.+.+++..+......+.
T Consensus 42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~~---~~~l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 42 VLFDCLNTSNREQVELICDILKRLLSALS---PDSL-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhccC---HHHH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 47788888888877888899999887542 2222 5578899999999999 99999999999999987777777788
Q ss_pred hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC-CC
Q 011328 114 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQ 192 (488)
Q Consensus 114 ~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~-~~ 192 (488)
+.++++.++.++.+++..+...|+.+|.+++...+.. +.+...+.+..|..++ ...+..++..+..++.+++... ..
T Consensus 117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHHH
Confidence 8999999999999999999999999999999877654 4566777788888888 5557788889999999998776 33
Q ss_pred CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcch-----H-hHHHHHH
Q 011328 193 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV-----L-IPALRTV 266 (488)
Q Consensus 193 ~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v-----~-~~a~~~L 266 (488)
.......|+++.++..+.++|.-++..++.++..++. .+...+.+.+.|+++.|..++.+.+.+- . -..+...
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~ 273 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF 273 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence 3444557899999999999999999999999999999 4455688899999999999997643221 2 2234667
Q ss_pred hHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHH-HHc-C----ChHHHHHHHhcCC
Q 011328 267 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI-IEA-G----IIGPLVNLLLNAE 340 (488)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~-~----~l~~L~~ll~~~~ 340 (488)
++++...+....... ..++..+.+++.+. +...+..|..+++.++.. .+....+ ... + ++........++.
T Consensus 274 g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~ 350 (503)
T PF10508_consen 274 GNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSGS 350 (503)
T ss_pred HHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCCc
Confidence 777775443332222 24566677777787 899999999999999865 5555555 332 2 3445555555667
Q ss_pred hhHHHHHHHHHHHhccCCCH---HHH----HH---HHHCCChH-HHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCC
Q 011328 341 FEIKKEAAWAISNATSGGSN---EQI----KF---LVSQGCIK-PLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGN 409 (488)
Q Consensus 341 ~~v~~~a~~aL~~l~~~~~~---~~~----~~---l~~~~~i~-~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~ 409 (488)
.++|..++.++.++...... +.. .. ....+... .++.+++.+=++++..++..|..++... +.
T Consensus 351 ~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~-Wg----- 424 (503)
T PF10508_consen 351 TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQP-WG----- 424 (503)
T ss_pred hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCH-HH-----
Confidence 88999999999999654432 111 11 12234455 8888888887999999999999998764 22
Q ss_pred CCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 011328 410 TGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEED 456 (488)
Q Consensus 410 ~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~ 456 (488)
.+......|.++.+.+=....+++.++.-..++.++...-.
T Consensus 425 ------~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 425 ------QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred ------HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 25566677777777766666678887777777777774433
No 15
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.79 E-value=6.1e-16 Score=152.47 Aligned_cols=366 Identities=17% Similarity=0.193 Sum_probs=280.1
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHH
Q 011328 76 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL 155 (488)
Q Consensus 76 ~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 155 (488)
+.++..|++.+ .+....++.+|..+.. ....... ..+..+.|...|.++++.+|..+++.+.++..++......+.
T Consensus 41 ~~lf~~L~~~~-~e~v~~~~~iL~~~l~-~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 41 PVLFDCLNTSN-REQVELICDILKRLLS-ALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred HHHHHHHhhcC-hHHHHHHHHHHHHHHh-ccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 44888888887 6777888899999887 3232222 346689999999999999999999999999988877777788
Q ss_pred hcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhH
Q 011328 156 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI 235 (488)
Q Consensus 156 ~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~ 235 (488)
+.+.++.++..+ .+++..+...|..+|..++...+........+..+.|..++...+..++..++.++.+++..+++..
T Consensus 117 ~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 117 DNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred CccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence 889999999999 8899999999999999999877555445556678899999988888999999999999999999898
Q ss_pred HHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhh-----HHHHHHHHHH
Q 011328 236 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS-----IKKEACWTIS 310 (488)
Q Consensus 236 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~-----v~~~a~~~L~ 310 (488)
..+.+.|+++.++..+++++.-++..++.++..++. .+...+.+.+.|+++.|..++.+..... .-...+...+
T Consensus 196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g 274 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG 274 (503)
T ss_pred HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence 989999999999999999888899999999999999 6677888899999999999997652222 1223345666
Q ss_pred HHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHH-HHC-----CChHHHHhhcCCCCH
Q 011328 311 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFL-VSQ-----GCIKPLCDLLNCPDP 384 (488)
Q Consensus 311 nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l-~~~-----~~i~~L~~ll~~~~~ 384 (488)
+++...+....... ..++..+.+++.+.|...+..|..+++.++. +.+....+ ... .++..+.....+...
T Consensus 275 ~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~ 351 (503)
T PF10508_consen 275 NLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGST 351 (503)
T ss_pred HHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCch
Confidence 77764344332222 2366777788888899999999999999986 34666666 322 235555555667778
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhcc--HH-HHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011328 385 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEG--LE-KIENLQSHDNTEIYEKAVKILETYWV 453 (488)
Q Consensus 385 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~~-~L~~l~~~~~~~v~~~a~~~l~~~~~ 453 (488)
+++.+++.++.+++......... + -.+.....+...+. .. .+..+...|=++++..+.+++..+..
T Consensus 352 ~lk~r~l~al~~il~~~~~~~~~-~--i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 352 ELKLRALHALASILTSGTDRQDN-D--ILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA 420 (503)
T ss_pred HHHHHHHHHHHHHHhcCCCCchH-H--HHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 99999999999998665431100 0 00111222332222 33 77788888889999999999887654
No 16
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.79 E-value=4.1e-17 Score=146.66 Aligned_cols=381 Identities=16% Similarity=0.142 Sum_probs=278.1
Q ss_pred CCCHHHHHHHHHHHHHHhccC--CCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCH
Q 011328 41 SDDRNIQLDATTQFRKLLSIE--RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAV 118 (488)
Q Consensus 41 s~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 118 (488)
..+..++..+..++......+ ++...+.-+..++++.|.+...+++ .++..+++++|+|+|.++.+.|..+.+.|+-
T Consensus 53 ~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGa 131 (604)
T KOG4500|consen 53 TASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGA 131 (604)
T ss_pred eccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCc
Confidence 355666777777777765432 1112233355778888888888887 8999999999999999999999999999998
Q ss_pred HHHHHhhCC-------CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc-ccccHhHHHHHHHHHHHhhcCC
Q 011328 119 PIFVRLLSS-------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGK 190 (488)
Q Consensus 119 ~~L~~~L~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~v~~~a~~~L~~l~~~~ 190 (488)
..+++.|+. .+.+....+...|.|..-++.+.+...++.|+++.|...+. ...+....+.......++..-.
T Consensus 132 qivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~ 211 (604)
T KOG4500|consen 132 QIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFV 211 (604)
T ss_pred eehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHH
Confidence 888887765 23578888899999999999999999999999999888774 3344444444444444433221
Q ss_pred --CCCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcc-------hH
Q 011328 191 --PQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPS-------VL 259 (488)
Q Consensus 191 --~~~~~~~~~~~~~~l~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~-------v~ 259 (488)
..............+++++.+ .++.+.+.++..+...++++.-. -.+.+.|.+..++++++. +... ..
T Consensus 212 ~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vk-l~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~ 290 (604)
T KOG4500|consen 212 CEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVK-LSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLF 290 (604)
T ss_pred HHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCccee-eehhhcchHHHHHHHHHhcccccchHHHHHHH
Confidence 012223335566667777765 37788888999999988876544 347777889999888866 2211 22
Q ss_pred hHHHHHHhHhhcCCchhhHHHhhCC-ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc
Q 011328 260 IPALRTVGNIVTGDDMQTQCIINHQ-ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN 338 (488)
Q Consensus 260 ~~a~~~L~~l~~~~~~~~~~~~~~~-~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~ 338 (488)
..++....-+..+.+ ..+.+...+ +++.+.+++.+. +......+..+++|+++. +.....+++.+++..|++++..
T Consensus 291 k~~~el~vllltGDe-SMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~-D~~ci~~v~~~~~nkL~~~l~~ 367 (604)
T KOG4500|consen 291 KRIAELDVLLLTGDE-SMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARR-DDICIQLVQKDFLNKLISCLMQ 367 (604)
T ss_pred HhhhhHhhhhhcCch-HHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHH
Confidence 233444444444333 344455444 899999999999 899999999999999987 5566778899999999999975
Q ss_pred -----CChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCcc
Q 011328 339 -----AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGV 413 (488)
Q Consensus 339 -----~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~ 413 (488)
++.+++..++.||.|++..- .....+...|+.+.+...++...|.+....+..++-+...-+..
T Consensus 368 ~~~vdgnV~~qhA~lsALRnl~IPv--~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~--------- 436 (604)
T KOG4500|consen 368 EKDVDGNVERQHACLSALRNLMIPV--SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYI--------- 436 (604)
T ss_pred hcCCCccchhHHHHHHHHHhccccC--CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHH---------
Confidence 36678899999999998754 45667889999999999999999999988888887666554432
Q ss_pred chHHHHHHhhccHHHHHHhhcCCCHH
Q 011328 414 NLFAQAIDDAEGLEKIENLQSHDNTE 439 (488)
Q Consensus 414 ~~~~~~l~~~g~~~~L~~l~~~~~~~ 439 (488)
..+....-..+++|..+..+++-.
T Consensus 437 --a~eL~kn~~l~ekLv~Wsks~D~a 460 (604)
T KOG4500|consen 437 --ACELAKNPELFEKLVDWSKSPDFA 460 (604)
T ss_pred --HHHHhcCHHHHHHHHHhhhCCccc
Confidence 244445555678888888776544
No 17
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.1e-17 Score=157.67 Aligned_cols=416 Identities=17% Similarity=0.186 Sum_probs=275.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011328 34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 113 (488)
Q Consensus 34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 113 (488)
..++.+...++.+|-..-..++.+++....... ..++|.|.++|.+++ ....+.|..+|..+++++.+.-+.=+
T Consensus 94 ~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~w-----pelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~ 167 (885)
T KOG2023|consen 94 ECLHGLGDASPLIRATVGIVITTIASTGGLQHW-----PELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDV 167 (885)
T ss_pred HHHhhccCchHHHHhhhhheeeeeecccccccc-----hhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhc
Confidence 466667777777776666666676665422222 468999999999999 78999999999999997765544321
Q ss_pred hC----CCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhc-CChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328 114 DH----GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN-GALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 114 ~~----g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 188 (488)
.. -.+|.++++.+++++.+|..|+.++..+....+. ...... ..++.+..+- .+.++.||.+.|.++..|..
T Consensus 168 ~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q--al~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Lle 244 (885)
T KOG2023|consen 168 LTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ--ALYVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLE 244 (885)
T ss_pred ccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH--HHHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHH
Confidence 11 3578999999999999999999999988755432 122221 2455555555 88899999999999999999
Q ss_pred CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHH-------------------------------
Q 011328 189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA------------------------------- 237 (488)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~------------------------------- 237 (488)
..+.+-.....++++.+++..++.|.+|...|+.....+++.+.. ...
T Consensus 245 vr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~-~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~ee 323 (885)
T KOG2023|consen 245 VRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPIC-KEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEE 323 (885)
T ss_pred hcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHHHHHccCccccccHHHhcCccc
Confidence 888888888899999999999999999999998888877764311 010
Q ss_pred -------------------------------------------------------------HHHhCCHHH----HHHhcC
Q 011328 238 -------------------------------------------------------------VIEAGVCPR----LVELLR 252 (488)
Q Consensus 238 -------------------------------------------------------------~~~~~~l~~----L~~lL~ 252 (488)
+....+++. |-..|.
T Consensus 324 D~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~ 403 (885)
T KOG2023|consen 324 DESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLS 403 (885)
T ss_pred cccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcC
Confidence 111123333 333344
Q ss_pred CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC--CHHHHHHHHHcCChH
Q 011328 253 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG--NVNQIQAIIEAGIIG 330 (488)
Q Consensus 253 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~l~ 330 (488)
++++.+|+++..+++.++.+.-...-.-+ ..+++.++.+|.+. .+-||..+||+|+..+.. ..+ .+..+. .++.
T Consensus 404 ~~~W~vrEagvLAlGAIAEGcM~g~~p~L-peLip~l~~~L~DK-kplVRsITCWTLsRys~wv~~~~-~~~~f~-pvL~ 479 (885)
T KOG2023|consen 404 SEEWKVREAGVLALGAIAEGCMQGFVPHL-PELIPFLLSLLDDK-KPLVRSITCWTLSRYSKWVVQDS-RDEYFK-PVLE 479 (885)
T ss_pred cchhhhhhhhHHHHHHHHHHHhhhcccch-HHHHHHHHHHhccC-ccceeeeeeeeHhhhhhhHhcCC-hHhhhH-HHHH
Confidence 56667777777777777764322111111 13688899999999 999999999999998861 112 222222 2566
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCC
Q 011328 331 PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNT 410 (488)
Q Consensus 331 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~ 410 (488)
.|++.+-+++..|++.|+.+++.+-.....+..+++.. .+..|+..+.....+-......+++.+..+....-..
T Consensus 480 ~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~--IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~--- 554 (885)
T KOG2023|consen 480 GLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEY--ILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNK--- 554 (885)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHH--HHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCc---
Confidence 67777777889999999999999988777676665433 4455555444222222222334444444433211100
Q ss_pred CccchHHHHHHhhccHHHHHHhhcC------------------------CCHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 011328 411 GGVNLFAQAIDDAEGLEKIENLQSH------------------------DNTEIYEKAVKILETYWVEEDEDEPLPPGDA 466 (488)
Q Consensus 411 ~~~~~~~~~l~~~g~~~~L~~l~~~------------------------~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~ 466 (488)
..|.+.+. --.+++...+.++ -.+.|+.++..++++.....-....+|++++
T Consensus 555 ---~~YiqiLm-PPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~ 630 (885)
T KOG2023|consen 555 ---PAYIQILM-PPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEA 630 (885)
T ss_pred ---HHHHHHhc-cHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccC
Confidence 00111111 1112222222211 2478999999999988777888888999999
Q ss_pred CCCccc
Q 011328 467 TQAGFG 472 (488)
Q Consensus 467 ~~~~~~ 472 (488)
|.|+|-
T Consensus 631 pdkdfi 636 (885)
T KOG2023|consen 631 PDKDFI 636 (885)
T ss_pred CCcceE
Confidence 999983
No 18
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=4.2e-15 Score=149.69 Aligned_cols=392 Identities=17% Similarity=0.153 Sum_probs=273.8
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc---
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS--- 106 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~--- 106 (488)
+.++.|.++.+|+++..|..|+..|..+...-++.....+. .+.+.+.+.+.+++. .+|..|+++++.++...+
T Consensus 118 ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~~d~s~-~vr~~a~rA~~a~~~~~~~~~ 194 (1075)
T KOG2171|consen 118 ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTMTDPSS-PVRVAAVRALGAFAEYLENNK 194 (1075)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHhccch
Confidence 34555666667999999999999999987655333332222 356777788888884 499999999999887443
Q ss_pred hhhHHHHhCCCHHHHHHhh----CCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc-ccccHhHHHHHHH
Q 011328 107 ENTRVVIDHGAVPIFVRLL----SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-EHAKLSMLRNATW 181 (488)
Q Consensus 107 ~~~~~~~~~g~i~~L~~~L----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~v~~~a~~ 181 (488)
..+..+. ..+|.++..+ ..++.+....++.+|..++...+.+-...+. .++...+.... ++-+..+|..|+.
T Consensus 195 ~~~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe 271 (1075)
T KOG2171|consen 195 SEVDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALE 271 (1075)
T ss_pred HHHHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHH
Confidence 2233332 3456565555 4477777888999999998877665333322 13333344442 3447889999999
Q ss_pred HHHHhhcCCCCC---ChhhhhchHHHHHHhhccC--C--------------hhHHHHHHHHHHHhccCCchhHHHHHHhC
Q 011328 182 TLSNFCRGKPQP---LFEQTRPALPALERLIHSN--D--------------DEVLTDACWALSYLSDGTNDKIQAVIEAG 242 (488)
Q Consensus 182 ~L~~l~~~~~~~---~~~~~~~~~~~l~~ll~~~--~--------------~~v~~~al~~L~~l~~~~~~~~~~~~~~~ 242 (488)
+|..++++.+.. ........++.++.++... | ..--..|..++-.++.+=+.. .+-.-
T Consensus 272 ~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~---~v~p~ 348 (1075)
T KOG2171|consen 272 FLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK---QVLPP 348 (1075)
T ss_pred HHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh---hehHH
Confidence 999999884322 2224456777777776421 1 113455666777766543321 11124
Q ss_pred CHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHH
Q 011328 243 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA 322 (488)
Q Consensus 243 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 322 (488)
+++.+-.++.++++.-|.+++.+|+.++.+........++ .+++.++..|+++ ++.||..|+.+++.++..-...++.
T Consensus 349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk 426 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQK 426 (1075)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHH
Confidence 5677888889999999999999999999998877666555 6889999999999 9999999999999999876666666
Q ss_pred HHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChH-HHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011328 323 IIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIK-PLCDLLNCPDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 323 l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~-~L~~ll~~~~~~v~~~al~~L~~l~~~ 400 (488)
-....+.+.|+..+.+. ++.|+..|+.++.|++..+..+....... ++++ .|..++.++.+.+++.++.+|..+...
T Consensus 427 ~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A 505 (1075)
T KOG2171|consen 427 KHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADA 505 (1075)
T ss_pred HHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 66667888999999886 77999999999999998876665544333 4666 455566678889999999999999877
Q ss_pred hhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCC-HHHHHHHHH
Q 011328 401 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN-TEIYEKAVK 446 (488)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~-~~v~~~a~~ 446 (488)
.+.. |...+.+. ++.|..++.+.+ ++.+....+
T Consensus 506 A~~~-----------F~pY~d~~--Mp~L~~~L~n~~~~d~r~Lrgk 539 (1075)
T KOG2171|consen 506 AQEK-----------FIPYFDRL--MPLLKNFLQNADDKDLRELRGK 539 (1075)
T ss_pred Hhhh-----------hHhHHHHH--HHHHHHHHhCCCchhhHHHHhh
Confidence 6543 44444443 666777754443 444433333
No 19
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=3.4e-15 Score=136.25 Aligned_cols=379 Identities=17% Similarity=0.128 Sum_probs=289.4
Q ss_pred CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHH
Q 011328 42 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF 121 (488)
Q Consensus 42 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 121 (488)
..+++...|++.|.+++.. ...-..+...+++..|++.|..++ .++.......|..++- -.+++..+.+.|+++.|
T Consensus 275 KQeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL 350 (791)
T KOG1222|consen 275 KQEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKL 350 (791)
T ss_pred HHHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHHH
Confidence 4455566788888998764 344566778899999999999988 7888888888998887 67889999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhch
Q 011328 122 VRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPA 201 (488)
Q Consensus 122 ~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 201 (488)
++++...+++++...+..+.|++.++. .+..++..|.+|.+..++..+.. ...|+..+..++.++..+.......+
T Consensus 351 ~klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~---~~iA~~~lYh~S~dD~~K~MfayTdc 426 (791)
T KOG1222|consen 351 LKLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTK---HGIALNMLYHLSCDDDAKAMFAYTDC 426 (791)
T ss_pred HHhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCccc---chhhhhhhhhhccCcHHHHHHHHHHH
Confidence 999999999999999999999998765 67888899999999999944333 23467778888887766666777889
Q ss_pred HHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc-CCCCcchHhHHHHHHhHhhcCCchhhHH
Q 011328 202 LPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQC 279 (488)
Q Consensus 202 ~~~l~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 279 (488)
++.+++.+-+ .+.++-...+..-.|++.+.. ..+.+++..++..|++.- +..++ .-...+.+++.+.......
T Consensus 427 i~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR-NaQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn~ 501 (791)
T KOG1222|consen 427 IKLLMKDVLSGTGSEVDLALIALCINLCLNKR-NAQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGATQNM 501 (791)
T ss_pred HHHHHHHHHhcCCceecHHHHHHHHHHHhccc-cceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccchHHHH
Confidence 9988877654 355565555555556775543 335566666777777654 33332 2356677888766544444
Q ss_pred HhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccC
Q 011328 280 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSG 357 (488)
Q Consensus 280 ~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~ 357 (488)
+++ .+.-|..+++...+...-.+++.+++|+...+-+-.+.+-+.+++|.+-..|..+ ..++......+++.++..
T Consensus 502 Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d 579 (791)
T KOG1222|consen 502 FID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD 579 (791)
T ss_pred HHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh
Confidence 444 4666777777665777888999999999886566556666788999999988876 567888888899999864
Q ss_pred CCHHHHHHHHHCCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC
Q 011328 358 GSNEQIKFLVSQGCIKPLCDLLNC--PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH 435 (488)
Q Consensus 358 ~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~ 435 (488)
...+..+..+++++.|+++|+. .|.+++.+.+..+..++..... ..-++.+...-..+..++++
T Consensus 580 --~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~t------------r~~miket~~~AylIDLMHD 645 (791)
T KOG1222|consen 580 --LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELT------------RRLMIKETALGAYLIDLMHD 645 (791)
T ss_pred --hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH------------HHHHHhhccchHHHHHHHhc
Confidence 4778888889999999999984 5678888888888888876332 24556777778899999999
Q ss_pred CCHHHHHHHHHHHH
Q 011328 436 DNTEIYEKAVKILE 449 (488)
Q Consensus 436 ~~~~v~~~a~~~l~ 449 (488)
.|.++++.+...+.
T Consensus 646 kN~eiRkVCDn~Ld 659 (791)
T KOG1222|consen 646 KNAEIRKVCDNALD 659 (791)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999987766553
No 20
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.73 E-value=4.2e-15 Score=133.90 Aligned_cols=404 Identities=13% Similarity=0.069 Sum_probs=295.7
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCC------CChhHHHHHHHHHHHhcC
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD------DFPQLQFEAAWALTNIAS 103 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~------~~~~v~~~a~~~L~~l~~ 103 (488)
+.++.|.+...|++.++-.+..++|.++...+ .+.+..+.+.|+-..+++.|+.. .+.+.-.-++..|.|...
T Consensus 87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 87 EALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 56777778888999999999999999987765 78899999999977777777632 123555667778999998
Q ss_pred CCchhhHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCC-chhHHHHHhcCChHHHHHHhcccccHhHHHHHH
Q 011328 104 GTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT 180 (488)
Q Consensus 104 ~~~~~~~~~~~~g~i~~L~~~L~~--~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~ 180 (488)
++.+.+..+++.|+++.|...+.- .+....+..+....|+.+-. ....+...+......+++++.....+++.+.+.
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 899999999999999999887653 66677777666666664321 112344555667778888887777888899999
Q ss_pred HHHHHhhcCCCCCChhhhhchHHHHHHhhcc-CCh-------hHHHHHHHHHHHhccCCchhHHHHHHhC-CHHHHHHhc
Q 011328 181 WTLSNFCRGKPQPLFEQTRPALPALERLIHS-NDD-------EVLTDACWALSYLSDGTNDKIQAVIEAG-VCPRLVELL 251 (488)
Q Consensus 181 ~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~-~~~-------~v~~~al~~L~~l~~~~~~~~~~~~~~~-~l~~L~~lL 251 (488)
..+...+.++..+-.....|.+..+..+++. .+. .....++....-+..++ +.++.+...+ +++.+.+++
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGD-eSMq~L~~~p~~l~~~~sw~ 324 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGD-ESMQKLHADPQFLDFLESWF 324 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCc-hHHHHHhcCcHHHHHHHHHh
Confidence 9999999988777777778889999888875 221 22233333333333333 4456566655 899999999
Q ss_pred CCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhccc----chhhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 011328 252 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN----YKKSIKKEACWTISNITAGNVNQIQAIIEAG 327 (488)
Q Consensus 252 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 327 (488)
.+.+......+.-+++|+++ ++....++++.+++..|++.+... .+-+++..++.+|.|++-. ..+...++..|
T Consensus 325 ~S~d~~l~t~g~LaigNfaR-~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP-v~nka~~~~aG 402 (604)
T KOG4500|consen 325 RSDDSNLITMGSLAIGNFAR-RDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP-VSNKAHFAPAG 402 (604)
T ss_pred cCCchhHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc-CCchhhccccc
Confidence 99999999999999999999 455667788889999999988541 1567788999999999875 34466788899
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHH-HCCChHHHHhhcCCCCHH-HHHHHHHHHHHHHHhhhhhh
Q 011328 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLV-SQGCIKPLCDLLNCPDPR-IVTVCLEGLENILKAGEAEK 405 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~-v~~~al~~L~~l~~~~~~~~ 405 (488)
+.+.++..++...+.|...-+..+.-+.... +-..-.+. ....++.|++.-+++|.. +.-...+.+.-+++......
T Consensus 403 vteaIL~~lk~~~ppv~fkllgTlrM~~d~q-e~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kd 481 (604)
T KOG4500|consen 403 VTEAILLQLKLASPPVTFKLLGTLRMIRDSQ-EYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKD 481 (604)
T ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHHhch-HHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhh
Confidence 9999999999999999999888888776543 22333333 235577777777777754 55555555555555433111
Q ss_pred ccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHH
Q 011328 406 NMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 448 (488)
Q Consensus 406 ~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l 448 (488)
....+-+.|+++....+..+.+-.++..|...+
T Consensus 482 ----------v~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal 514 (604)
T KOG4500|consen 482 ----------VILTVPKSGGIKEKVSMFTKNHINMQNEALVAL 514 (604)
T ss_pred ----------hHhhccccccHHHHHHHHHHhhHHHhHHHHHHH
Confidence 244456788888888888777777776666554
No 21
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=4.2e-15 Score=129.76 Aligned_cols=310 Identities=12% Similarity=0.127 Sum_probs=253.8
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCC-CChhHHHHHHHHHHHhcCCCchhhHHHHhCCCH
Q 011328 40 WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-DFPQLQFEAAWALTNIASGTSENTRVVIDHGAV 118 (488)
Q Consensus 40 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 118 (488)
.+++..+...++.+|..+..+. + .+.+..++..++.+|... ++.++....+.++..-+...+.+|+.+++.+++
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~q-p----dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il 191 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHKQ-P----DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL 191 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcCC-c----chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence 3577778888888888876553 2 345677889999998543 237888888889988888889999999999999
Q ss_pred HHHHHhhCC-CCHHHHHHHHHHHhhhhCCCc---------hhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328 119 PIFVRLLSS-PTDDVREQAVWALGNVAGDSP---------KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 119 ~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~---------~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 188 (488)
+.+...+.. +..++.+.+.|++..+..+++ +..+.+...+++..|++.+.-.-++.+...++.+|..++-
T Consensus 192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV 271 (461)
T KOG4199|consen 192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV 271 (461)
T ss_pred HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 999987765 444677788999999876543 2345677778889999999767789999999999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhccC-Ch---hHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC--CCCcchHhHH
Q 011328 189 GKPQPLFEQTRPALPALERLIHSN-DD---EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPA 262 (488)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~~ll~~~-~~---~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~a 262 (488)
.++........|++..+++++.+. +. .....++..|+.++.+++ ....+++.|+.+.++.++. +.+|.+...+
T Consensus 272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Ds-vKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~ 350 (461)
T KOG4199|consen 272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDS-VKSTIVEKGGLDKIITLALRHSDDPLVIQEV 350 (461)
T ss_pred HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCc-hHHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence 877777788899999999999873 33 355778888888887665 4577999999999999874 3678999999
Q ss_pred HHHHhHhhcCCchhhHHHhhCCChHHHHHHhc-ccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCh
Q 011328 263 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF 341 (488)
Q Consensus 263 ~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~ 341 (488)
+.+++-++-..++....+++.|+-...++.|+ ++....+++.++|.+.|++.++.+++..++.. .++.|+..-...++
T Consensus 351 ~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~ 429 (461)
T KOG4199|consen 351 MAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHE 429 (461)
T ss_pred HHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCc
Confidence 99999999999999999999999999999885 55567899999999999999878887777775 67888888888888
Q ss_pred hHHHHHHHHHHHhcc
Q 011328 342 EIKKEAAWAISNATS 356 (488)
Q Consensus 342 ~v~~~a~~aL~~l~~ 356 (488)
.....|-.+|..+-.
T Consensus 430 tce~~akaALRDLGc 444 (461)
T KOG4199|consen 430 TCEAAAKAALRDLGC 444 (461)
T ss_pred cHHHHHHHHHHhcCc
Confidence 898889999988854
No 22
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.72 E-value=4.2e-15 Score=150.98 Aligned_cols=363 Identities=19% Similarity=0.207 Sum_probs=274.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCC--ChhHHHHHHHHHHHhcCCCchhh
Q 011328 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD--FPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~--~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
...++..+...|++ .-.+.|..+.+. .+....+...|.++.|+++|.-++ ..+.+..|-.+|.||....++.+
T Consensus 199 s~sllsml~t~D~e---e~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~k 273 (2195)
T KOG2122|consen 199 SNSLLSMLGTDDEE---EMARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEK 273 (2195)
T ss_pred hhHHhhhcccCCHH---HHHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchh
Confidence 34566666666654 335556664433 566788889999999999998654 25788889999999998666554
Q ss_pred HHHHhCCCHHHHH---H-------hhCC-----CC--HHHH-HHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc---
Q 011328 110 RVVIDHGAVPIFV---R-------LLSS-----PT--DDVR-EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN--- 168 (488)
Q Consensus 110 ~~~~~~g~i~~L~---~-------~L~~-----~~--~~v~-~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~--- 168 (488)
..-.+..++..|- . ++.. .. .+-+ ..|+.+|..++.+ .+.|..+-+.|+++.+-+++.
T Consensus 274 r~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh 352 (2195)
T KOG2122|consen 274 RGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDH 352 (2195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333333333332 1 2222 11 1222 2566666666655 567999999999999988773
Q ss_pred --------ccccHhHHHHHHHHHHHhhcCCC-CCChh-hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHH
Q 011328 169 --------EHAKLSMLRNATWTLSNFCRGKP-QPLFE-QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAV 238 (488)
Q Consensus 169 --------~~~~~~v~~~a~~~L~~l~~~~~-~~~~~-~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~ 238 (488)
+.....+++++..+|.||+.++. ++..+ ...|++..++..|.+...++..-...+|.||+...+..++.+
T Consensus 353 ~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkv 432 (2195)
T KOG2122|consen 353 EMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKV 432 (2195)
T ss_pred HhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHH
Confidence 12245789999999999999883 33333 347999999999998888999999999999997766555554
Q ss_pred H-HhCCHHHHHHh-cCCCCcchHhHHHHHHhHhhcCCchhhHHHh-hCCChHHHHHHhcccc---hhhHHHHHHHHHHHH
Q 011328 239 I-EAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQNY---KKSIKKEACWTISNI 312 (488)
Q Consensus 239 ~-~~~~l~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~lL~~~~---~~~v~~~a~~~L~nl 312 (488)
+ +.|-+..|..+ |+...+......+.+||||+.+..++...+- -.|.+..|+.+|.... .-.+...+..+|.|.
T Consensus 433 LrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNV 512 (2195)
T KOG2122|consen 433 LRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNV 512 (2195)
T ss_pred HHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHH
Confidence 4 45777777766 4556667888999999999998777665554 4588999999996541 345677888888888
Q ss_pred hc---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHH
Q 011328 313 TA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV 389 (488)
Q Consensus 313 ~~---~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 389 (488)
+. ....+++.+.+++++..|+..|++.+..+..++|.+|.||... +++.-++|++.|.+..|.+++++.+..+..-
T Consensus 513 SS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~G 591 (2195)
T KOG2122|consen 513 SSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKMIAMG 591 (2195)
T ss_pred HhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhhhhhh
Confidence 76 4678888899999999999999999999999999999999875 4677789999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 011328 390 CLEGLENILKAG 401 (488)
Q Consensus 390 al~~L~~l~~~~ 401 (488)
+..+|.|++..-
T Consensus 592 SaaALrNLln~R 603 (2195)
T KOG2122|consen 592 SAAALRNLLNFR 603 (2195)
T ss_pred HHHHHHHHhcCC
Confidence 999999998654
No 23
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=7.8e-14 Score=127.50 Aligned_cols=361 Identities=15% Similarity=0.155 Sum_probs=280.3
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
..+..|++.|..++.++.......|.++.-. .++...+.+.|++..|++++.... ++++...+..+.|++. +...|
T Consensus 304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSF-D~glr 379 (791)
T KOG1222|consen 304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSF-DSGLR 379 (791)
T ss_pred hHHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccc-ccccc
Confidence 5677899999988888888888888886443 466788889999999999999999 9999999999999999 78899
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
..++..|.+|.+..++.++. -...|+..++.++.++. .+..+.....++.+++.+..+.+..+-...+...-|+|.+
T Consensus 380 ~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln 456 (791)
T KOG1222|consen 380 PKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN 456 (791)
T ss_pred HHHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc
Confidence 99999999999999997643 33457788888887655 5677777788998888876777777777777777899988
Q ss_pred CCCCChhhhhchHHHHHHh-hccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHHHh
Q 011328 190 KPQPLFEQTRPALPALERL-IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVG 267 (488)
Q Consensus 190 ~~~~~~~~~~~~~~~l~~l-l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~ 267 (488)
..+.+.......+..+++. ++..|.- ....+++++.+.......+++ .+..|...++. ++++....++.+++
T Consensus 457 kRNaQlvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtla 530 (791)
T KOG1222|consen 457 KRNAQLVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLA 530 (791)
T ss_pred cccceEEecCcchHHHHHHHhcccchH----HHHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHh
Confidence 8777777777788777765 3444442 345677888776644444553 45556666654 45667788999999
Q ss_pred HhhcCCchhhHHHhhCCChHHHHHHhcccc-hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHH
Q 011328 268 NIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIK 344 (488)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~ 344 (488)
++....-...+.+.+...+|.+-..|+.+- ..++....+-+++.++.. ......+...++++.++++|+.. |.+..
T Consensus 531 nL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV 609 (791)
T KOG1222|consen 531 NLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFV 609 (791)
T ss_pred hcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHH
Confidence 998876677777778899999999987542 345667777777777664 45556666789999999999875 67777
Q ss_pred HHHHHHHHHhccCCCHHHHHHH-HHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhc
Q 011328 345 KEAAWAISNATSGGSNEQIKFL-VSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKN 406 (488)
Q Consensus 345 ~~a~~aL~~l~~~~~~~~~~~l-~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~ 406 (488)
.+.+.+...+..+. ..+..+ .+...-..|++++++.+.++++.+-.+|..+...+....+
T Consensus 610 ~QiiyVF~Q~l~He--~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAK 670 (791)
T KOG1222|consen 610 VQIIYVFLQFLKHE--LTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAK 670 (791)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHH
Confidence 88888888888763 333443 4567788999999999999999999999988887766544
No 24
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=1e-13 Score=121.20 Aligned_cols=317 Identities=15% Similarity=0.178 Sum_probs=248.0
Q ss_pred cCCHHHHHHhh---cCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCC
Q 011328 72 SGVVPRFIEFL---SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGD 146 (488)
Q Consensus 72 ~~~i~~L~~lL---~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~--~~~~v~~~a~~~L~~l~~~ 146 (488)
.|..+.++-++ .+++ ..+-..++.+|..+..+.|+ +.+..++..++.+|.. ++.++....+..+..-|..
T Consensus 103 ~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~ 177 (461)
T KOG4199|consen 103 NGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIM 177 (461)
T ss_pred CCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 34444444333 3455 67888889999888886665 4456678899998864 6788888888888888888
Q ss_pred CchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCC----------hhhhhchHHHHHHhhccC-Chh
Q 011328 147 SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL----------FEQTRPALPALERLIHSN-DDE 215 (488)
Q Consensus 147 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~----------~~~~~~~~~~l~~ll~~~-~~~ 215 (488)
+.-.|+.+++.++++-+..-+.......+.+.++|++..|...+.... .....+++..|++.+... ++.
T Consensus 178 hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~ 257 (461)
T KOG4199|consen 178 HEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPD 257 (461)
T ss_pred hHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCcc
Confidence 888899999999998888788666666889999999999987663221 122355678888888764 789
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC-Ccc---hHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHH
Q 011328 216 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPS---VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD 291 (488)
Q Consensus 216 v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~---v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ 291 (488)
+...++.+|..++-.+ +..+.+.+.|+++.++.++.+. +.. ....++..|..++. ++.....+++.|+.+.++.
T Consensus 258 ~L~~l~~tl~~lAVr~-E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii~ 335 (461)
T KOG4199|consen 258 SLVSLSTTLKALAVRD-EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKIIT 335 (461)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHHH
Confidence 9999999999998765 4567799999999999999873 333 44567888888876 6667788889999999998
Q ss_pred Hh-cccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCCHHHHHHHHH
Q 011328 292 LL-TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVS 368 (488)
Q Consensus 292 lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~ 368 (488)
++ ++..++.+..+++.+++-++..+|++...+++.|+-...++.++.. ...++++|++++.|++..+ .++...++.
T Consensus 336 l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs-~~~~~~~l~ 414 (461)
T KOG4199|consen 336 LALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS-AENRTILLA 414 (461)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh-hhccchHHh
Confidence 76 4555889999999999999998899999999999999999988875 5579999999999999764 456666555
Q ss_pred CCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 011328 369 QGCIKPLCDLLNCPDPRIVTVCLEGLENI 397 (488)
Q Consensus 369 ~~~i~~L~~ll~~~~~~v~~~al~~L~~l 397 (488)
.+++.|+..-+..++.....+-.+|+.+
T Consensus 415 -~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 415 -NGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred -ccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 5678888877777777777776777655
No 25
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.69 E-value=1.7e-14 Score=136.83 Aligned_cols=380 Identities=14% Similarity=0.115 Sum_probs=267.8
Q ss_pred hhcCCCCChhhHHHHhhhccHHHHHHHhcCCC--HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChh
Q 011328 12 FSLLKPMDPMFFIIQLQLESLPAMVAGVWSDD--RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ 89 (488)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~i~~l~~~L~s~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~ 89 (488)
..|..+-+..+.. |.++.++.+++.++ .+.+...+..+....+++ ......+.+.+.++.|+++|.++++..
T Consensus 38 ig~~~~K~~~ik~-----GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~e-qd~v~svL~~~~ll~Ll~LLs~sD~~~ 111 (678)
T KOG1293|consen 38 IGFTDNKETNIKL-----GAVELLLALLSLEDGSTELKNGFAVLLNSLFLGE-QDKVDSVLRIIELLKLLQLLSESDSLN 111 (678)
T ss_pred hcCCCccchhhhh-----cchHHHHhhccccCCchhhhhhHHHHHHhHHhhc-cchHHHHHHHhhHHHHHHHhcCcchHh
Confidence 4455566666777 99999999998654 566666777777777776 777888999999999999999888678
Q ss_pred HHHHHHHHHHHhcCCCchhhHHH--HhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHh
Q 011328 90 LQFEAAWALTNIASGTSENTRVV--IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF 167 (488)
Q Consensus 90 v~~~a~~~L~~l~~~~~~~~~~~--~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll 167 (488)
++...++++..+.+.++..-..+ ....+++.+..++..+.......-+....+++... ..+..+.+.++.+.+.-++
T Consensus 112 ~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~-~hq~Il~Na~i~ekI~~l~ 190 (678)
T KOG1293|consen 112 VLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK-DHQLILCNAGILEKINILL 190 (678)
T ss_pred HHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc-hhhheeccccchhhHHHHH
Confidence 99999999999998553332222 23345566555555345555555555566665544 4455666666666665555
Q ss_pred cccccHhHHHHHHHHHH---HhhcCCCCCChhh-----hhchHH--HHHHhhccCChhHHHHHHHHHHHhccCCchh---
Q 011328 168 NEHAKLSMLRNATWTLS---NFCRGKPQPLFEQ-----TRPALP--ALERLIHSNDDEVLTDACWALSYLSDGTNDK--- 234 (488)
Q Consensus 168 ~~~~~~~v~~~a~~~L~---~l~~~~~~~~~~~-----~~~~~~--~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~--- 234 (488)
...+...+..|+.+++ ++..+++...... ..++.+ .+.+++++++...+..++.++.++...+.+.
T Consensus 191 -~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l 269 (678)
T KOG1293|consen 191 -MYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPL 269 (678)
T ss_pred -HhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhcccccccc
Confidence 6667788899999998 6666654333222 244554 4556777777777777777777666433100
Q ss_pred -------------H-H----------------------------------HHHHhCCHHHHHHh----------------
Q 011328 235 -------------I-Q----------------------------------AVIEAGVCPRLVEL---------------- 250 (488)
Q Consensus 235 -------------~-~----------------------------------~~~~~~~l~~L~~l---------------- 250 (488)
. + ...+....+.+.++
T Consensus 270 ~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~ 349 (678)
T KOG1293|consen 270 PWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRL 349 (678)
T ss_pred ccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhH
Confidence 0 0 00000011111111
Q ss_pred ------------------------------------cCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhc
Q 011328 251 ------------------------------------LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT 294 (488)
Q Consensus 251 ------------------------------------L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~ 294 (488)
....+...+.+|+.++.++++.-...+..+-...+...+++++.
T Consensus 350 i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~ 429 (678)
T KOG1293|consen 350 ILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM 429 (678)
T ss_pred HHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh
Confidence 11123345566666666666543333333446678999999998
Q ss_pred ccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHH
Q 011328 295 QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKP 374 (488)
Q Consensus 295 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~ 374 (488)
.+ +..++..+..+++|+..........++.+|+++.+.+++.+.++.++..+.|+|.++..+++......+...-....
T Consensus 430 dp-~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~ 508 (678)
T KOG1293|consen 430 DP-EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANL 508 (678)
T ss_pred Cc-chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHH
Confidence 88 99999999999999999777778899999999999999999999999999999999999987777777766666777
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011328 375 LCDLLNCPDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 375 L~~ll~~~~~~v~~~al~~L~~l~~~ 400 (488)
+..+.+++++.|+++++..++|+...
T Consensus 509 i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 509 ILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 88888999999999999999999765
No 26
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.66 E-value=2.2e-13 Score=129.51 Aligned_cols=407 Identities=15% Similarity=0.100 Sum_probs=277.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchhhHHH
Q 011328 34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRVV 112 (488)
Q Consensus 34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~ 112 (488)
.++..+.+.+|+...+|.+-..+++.+. ++....+++.|.++.+..+++..+ ..+.+...+.++...+.+.......+
T Consensus 13 ~~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~sv 91 (678)
T KOG1293|consen 13 DLLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSV 91 (678)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHH
Confidence 4566677888999999999999988776 555567899999999999987654 25677677778888888788888999
Q ss_pred HhCCCHHHHHHhhCCCC-HHHHHHHHHHHhhhhCCCchhHHHH--HhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328 113 IDHGAVPIFVRLLSSPT-DDVREQAVWALGNVAGDSPKCRDLV--LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 113 ~~~g~i~~L~~~L~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~--~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
.+.+.++.|.+++.+.+ ..+++..++++.++.+.++...... .....+..+..++ ..+...+...-+....+++..
T Consensus 92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~ 170 (678)
T KOG1293|consen 92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSST 170 (678)
T ss_pred HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhcccccc
Confidence 99999999999999987 8999999999999987664321111 1112222222222 223333444445555556655
Q ss_pred CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHH---HhccCCchhHHHH----HHhCCHH--HHHHhcCCCCcchHh
Q 011328 190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALS---YLSDGTNDKIQAV----IEAGVCP--RLVELLRHPSPSVLI 260 (488)
Q Consensus 190 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~---~l~~~~~~~~~~~----~~~~~l~--~L~~lL~~~~~~v~~ 260 (488)
..........++.+.+.-++.......+..++.+++ ++..+++.....+ .+.|+.+ .+..++++++.+.+.
T Consensus 171 ~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l 250 (678)
T KOG1293|consen 171 KDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERL 250 (678)
T ss_pred chhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHH
Confidence 555555666788888877777778899999999999 7776666443322 2334444 455666777777777
Q ss_pred HHHHHHhHhhcCCch------------h---------------------------------------hHHHhhCCChHHH
Q 011328 261 PALRTVGNIVTGDDM------------Q---------------------------------------TQCIINHQALPCL 289 (488)
Q Consensus 261 ~a~~~L~~l~~~~~~------------~---------------------------------------~~~~~~~~~~~~L 289 (488)
.++.++..+...+.. . .....+....+..
T Consensus 251 ~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~ 330 (678)
T KOG1293|consen 251 RSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTT 330 (678)
T ss_pred HHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhH
Confidence 777777776654300 0 0000011111222
Q ss_pred HHHhcc----------------------------------------------------cchhhHHHHHHHHHHHHhcCCH
Q 011328 290 LDLLTQ----------------------------------------------------NYKKSIKKEACWTISNITAGNV 317 (488)
Q Consensus 290 ~~lL~~----------------------------------------------------~~~~~v~~~a~~~L~nl~~~~~ 317 (488)
.+++.. . +...+..|+-++.++++.-.
T Consensus 331 ~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l~~~s~srsV~ 409 (678)
T KOG1293|consen 331 TELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFVAAALLCLKSFSRSVS 409 (678)
T ss_pred HHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHHHHHHHHH
Confidence 222110 1 23334444444444443211
Q ss_pred HHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 011328 318 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 397 (488)
Q Consensus 318 ~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l 397 (488)
..+..+-...+..+|+.++..++..++..++.+|+|+.-.-+ .....+++.|+++.+..++.+.++.++..++|+|+++
T Consensus 410 aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l 488 (678)
T KOG1293|consen 410 ALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHL 488 (678)
T ss_pred HHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 111122245678999999999999999999999999986543 4567889999999999999999999999999999999
Q ss_pred HHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 011328 398 LKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEE 455 (488)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 455 (488)
+-.++... ...+-.-=+...|..+.++++..|++.+..+++++.-..
T Consensus 489 ~f~~de~~-----------k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 489 MFNCDEEE-----------KFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred HhcchHHH-----------HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 86655443 222222223577899999999999999999999998773
No 27
>PRK09687 putative lyase; Provisional
Probab=99.66 E-value=1.7e-14 Score=130.62 Aligned_cols=257 Identities=15% Similarity=0.134 Sum_probs=202.9
Q ss_pred cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhH
Q 011328 72 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151 (488)
Q Consensus 72 ~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (488)
.--++.|.++|.+++ ..+|..|+++|..+-. ..+++.+..+++++++.+|..++++|+.+-.....
T Consensus 22 ~~~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-- 87 (280)
T PRK09687 22 KLNDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-- 87 (280)
T ss_pred hccHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--
Confidence 346788899999999 8999999999988764 24578888899999999999999999998543211
Q ss_pred HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011328 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 231 (488)
Q Consensus 152 ~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 231 (488)
....++.|..++.+++++.|+..++.+|++++...... ...+++.+...+.++++.|+..++++|+.+..
T Consensus 88 ----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-- 157 (280)
T PRK09687 88 ----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND-- 157 (280)
T ss_pred ----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--
Confidence 11245667767558889999999999999987543211 23456667788888999999999999986632
Q ss_pred chhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011328 232 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 311 (488)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n 311 (488)
...++.|+.++.++++.+|..|+.+|+.+...++ .+.+.|+..+.+. +..||..|+++|+.
T Consensus 158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~ 218 (280)
T PRK09687 158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLAL 218 (280)
T ss_pred ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHc
Confidence 1457899999999999999999999999944333 3567799999988 99999999999998
Q ss_pred HhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHH
Q 011328 312 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVC 390 (488)
Q Consensus 312 l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a 390 (488)
+-. + ..++.|++.+.+++ ++..++.+|+.+-. + ..++.|.++++ ++|..++..+
T Consensus 219 ~~~--~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~---~---------~a~p~L~~l~~~~~d~~v~~~a 273 (280)
T PRK09687 219 RKD--K---------RVLSVLIKELKKGT--VGDLIIEAAGELGD---K---------TLLPVLDTLLYKFDDNEIITKA 273 (280)
T ss_pred cCC--h---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC---H---------hHHHHHHHHHhhCCChhHHHHH
Confidence 632 3 37899999999865 67889999999953 2 25788888886 7899999998
Q ss_pred HHHHHH
Q 011328 391 LEGLEN 396 (488)
Q Consensus 391 l~~L~~ 396 (488)
.+++..
T Consensus 274 ~~a~~~ 279 (280)
T PRK09687 274 IDKLKR 279 (280)
T ss_pred HHHHhc
Confidence 888753
No 28
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=3.1e-13 Score=136.43 Aligned_cols=359 Identities=17% Similarity=0.228 Sum_probs=258.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--CccHHHHHHcCCHHHHHH----hhcCCCChhHHHHHHHHHHHhcCCC
Q 011328 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIER--SPPINEVIQSGVVPRFIE----FLSRDDFPQLQFEAAWALTNIASGT 105 (488)
Q Consensus 32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~~i~~L~~----lL~~~~~~~v~~~a~~~L~~l~~~~ 105 (488)
.+.+.+++.+.+..++..|++++..++.... ....+.+. ..+|.++. .++.++ .+....++.+|..++...
T Consensus 161 ~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~--~llP~~l~vl~~~i~~~d-~~~a~~~l~~l~El~e~~ 237 (1075)
T KOG2171|consen 161 LRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFR--DLLPSLLNVLQEVIQDGD-DDAAKSALEALIELLESE 237 (1075)
T ss_pred HHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHH--HHhHHHHHHhHhhhhccc-hHHHHHHHHHHHHHHhhc
Confidence 3456677777666699999999998876542 22233333 34555554 445566 677788999999999866
Q ss_pred chhhHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCchhHHHHHh--cCChHHHHHHhcc---c--------
Q 011328 106 SENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLS--NGALMPLLAQFNE---H-------- 170 (488)
Q Consensus 106 ~~~~~~~~~~g~i~~L~~~L~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~ll~~---~-------- 170 (488)
+..-...+. .++..-+....+ -++.+|..|+.+|..+++.-|...+.... ...++.++..+-. +
T Consensus 238 pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~ 316 (1075)
T KOG2171|consen 238 PKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDD 316 (1075)
T ss_pred hHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccc
Confidence 666554443 356666666665 47899999999999998875443232222 1224444444411 0
Q ss_pred ---cc-HhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHH
Q 011328 171 ---AK-LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 246 (488)
Q Consensus 171 ---~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~ 246 (488)
++ ..-...|..+|-.++.+-+. ......+++.+-.++.++++.-|..++.+|+.++++..+.+...+. .+++.
T Consensus 317 ~ded~~~~~~~~A~~~lDrlA~~L~g--~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~ 393 (1075)
T KOG2171|consen 317 LDEDDEETPYRAAEQALDRLALHLGG--KQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPI 393 (1075)
T ss_pred cccccccCcHHHHHHHHHHHHhcCCh--hhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHH
Confidence 01 22456677777777766422 2334567788888899999999999999999999998877665554 78888
Q ss_pred HHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHH
Q 011328 247 LVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIE 325 (488)
Q Consensus 247 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~ 325 (488)
++..|.++.|.||..|+.+++.++..-....+.-....+++.|+..+.+..+++++..|+.++.|++.. ..+.+...++
T Consensus 394 Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd 473 (1075)
T KOG2171|consen 394 VLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD 473 (1075)
T ss_pred HHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 999999999999999999999999987777777777788899999999988899999999999999984 3444444444
Q ss_pred cCChH-HHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC----HHHHHHHHHHHHHHHHh
Q 011328 326 AGIIG-PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD----PRIVTVCLEGLENILKA 400 (488)
Q Consensus 326 ~~~l~-~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~----~~v~~~al~~L~~l~~~ 400 (488)
+++. .+..+++++.+.+++.+..+|+..+........+++-. .++.|.+.+...+ ..++-..+++++-+-..
T Consensus 474 -~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~--~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~A 550 (1075)
T KOG2171|consen 474 -GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDR--LMPLLKNFLQNADDKDLRELRGKTMECLSLIARA 550 (1075)
T ss_pred -HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHH--HHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHH
Confidence 4666 55556667789999999999999998777777777655 7888888887654 34566666676655443
No 29
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.66 E-value=9.7e-15 Score=148.40 Aligned_cols=325 Identities=19% Similarity=0.199 Sum_probs=249.2
Q ss_pred ccHHHHHHHhcC---CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHH---Hh-------hcCC------CChhH
Q 011328 30 ESLPAMVAGVWS---DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFI---EF-------LSRD------DFPQL 90 (488)
Q Consensus 30 ~~i~~l~~~L~s---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~---~l-------L~~~------~~~~v 90 (488)
|.+|.|++.|.- ++.+.+..|-.+|.+++... .+....-.+..++..|- .. ++.. ...+-
T Consensus 235 gCLpLLvQilH~~d~~~kear~~A~aALHNIVhSq-PD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H 313 (2195)
T KOG2122|consen 235 GCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQ-PDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEH 313 (2195)
T ss_pred cchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccch
Confidence 899999999973 35688999999999998776 33322222222333332 11 2211 11234
Q ss_pred HH-HHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC------------CCHHHHHHHHHHHhhhhCCCchhHH-HHHh
Q 011328 91 QF-EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS------------PTDDVREQAVWALGNVAGDSPKCRD-LVLS 156 (488)
Q Consensus 91 ~~-~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~------------~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~ 156 (488)
+. .|+.+|..++. +++.|..+.+.|+++.+-.++.- ....+|..+..+|.||..++...+. .+..
T Consensus 314 ~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~ 392 (2195)
T KOG2122|consen 314 QLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQ 392 (2195)
T ss_pred hhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence 44 56677778887 89999999999999999887742 2357899999999999977755544 4556
Q ss_pred cCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHh-hccCChhHHHHHHHHHHHhccCCch
Q 011328 157 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERL-IHSNDDEVLTDACWALSYLSDGTND 233 (488)
Q Consensus 157 ~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~l~~l-l~~~~~~v~~~al~~L~~l~~~~~~ 233 (488)
.|++..++..| .+..+++......+|.||+-.. ..+..+...|-+-.|+.. ++.........++.+|+||+.+..+
T Consensus 393 rgfMeavVAQL-~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcte 471 (2195)
T KOG2122|consen 393 RGFMEAVVAQL-ISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTE 471 (2195)
T ss_pred hhHHHHHHHHH-hcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccc
Confidence 68899999999 5566678888889999998654 333444445555555544 5566778899999999999988776
Q ss_pred hHHHHHHh-CCHHHHHHhcCCC----CcchHhHHHHHHhHhhc---CCchhhHHHhhCCChHHHHHHhcccchhhHHHHH
Q 011328 234 KIQAVIEA-GVCPRLVELLRHP----SPSVLIPALRTVGNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA 305 (488)
Q Consensus 234 ~~~~~~~~-~~l~~L~~lL~~~----~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a 305 (488)
+...++.. |.+..|+.+|... .-.+.+.+-.+|.|++. .++..++.+.+++.+..|+..|++. +..+...+
T Consensus 472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiVSNa 550 (2195)
T KOG2122|consen 472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIVSNA 550 (2195)
T ss_pred cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEeecc
Confidence 66666654 8899999999775 34577777777777664 3566777888999999999999999 89999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCC
Q 011328 306 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 358 (488)
Q Consensus 306 ~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 358 (488)
|.+|+||+..+++..+.+++.|.++.|..++++++..+..-++.+|.|+....
T Consensus 551 CGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 551 CGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999998654
No 30
>PRK09687 putative lyase; Provisional
Probab=99.66 E-value=4.3e-14 Score=127.95 Aligned_cols=255 Identities=15% Similarity=0.120 Sum_probs=200.5
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
-.++.|.+.|.+++..++..+++.|..+-. ..+++.+..++++++ +.+|..|+++|+.+-... ..
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~-~~- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAK-RC- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCc-cc-
Confidence 567889999999999999999999988532 236778888899998 999999999999986521 11
Q ss_pred HHHHhCCCHHHHHHh-hCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328 110 RVVIDHGAVPIFVRL-LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 188 (488)
....++.|..+ ++++++.+|..++.+|++++........ ..+..+...+ .+.+..|+..++++|..+..
T Consensus 88 ----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~-----~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~ 157 (280)
T PRK09687 88 ----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSP-----KIVEQSQITA-FDKSTNVRFAVAFALSVIND 157 (280)
T ss_pred ----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccch-----HHHHHHHHHh-hCCCHHHHHHHHHHHhccCC
Confidence 11346777776 6778999999999999999654321111 1344455555 66788999999999976543
Q ss_pred CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011328 189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268 (488)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 268 (488)
...++.|+.++.++++.|+..++.+|+.+....+ ..++.|+..+.+.++.||..|.+.|+.
T Consensus 158 ----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 158 ----------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred ----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 3588999999999999999999999999843332 445778999999999999999999988
Q ss_pred hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCChhHHHHH
Q 011328 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-NAEFEIKKEA 347 (488)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~a 347 (488)
+-. + .+++.|++.++++ + ++..++.+|+++.. +. .+|.|..++. .+|..++..|
T Consensus 219 ~~~--~---------~av~~Li~~L~~~-~--~~~~a~~ALg~ig~--~~---------a~p~L~~l~~~~~d~~v~~~a 273 (280)
T PRK09687 219 RKD--K---------RVLSVLIKELKKG-T--VGDLIIEAAGELGD--KT---------LLPVLDTLLYKFDDNEIITKA 273 (280)
T ss_pred cCC--h---------hHHHHHHHHHcCC-c--hHHHHHHHHHhcCC--Hh---------HHHHHHHHHhhCCChhHHHHH
Confidence 632 2 5688999999887 4 67889999998853 32 7889999997 6799999999
Q ss_pred HHHHHH
Q 011328 348 AWAISN 353 (488)
Q Consensus 348 ~~aL~~ 353 (488)
.++|..
T Consensus 274 ~~a~~~ 279 (280)
T PRK09687 274 IDKLKR 279 (280)
T ss_pred HHHHhc
Confidence 998854
No 31
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.63 E-value=2.5e-13 Score=143.64 Aligned_cols=275 Identities=16% Similarity=0.188 Sum_probs=220.4
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
..++.|++.|.++++.+|..|+..|..+.. .+.++.|+.+|++++ +.+|..|+.+|..+....+
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~--- 684 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP--- 684 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC---
Confidence 567889999999999999999999998642 246889999999998 8999999999988854111
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
..+.|...|.++++.+|..++.+|..+.... ...++..| .+.++.++..|+.+|..+-.
T Consensus 685 -------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L-~D~d~~VR~~Av~aL~~~~~- 743 (897)
T PRK13800 685 -------PAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAAL-GDPDHRVRIEAVRALVSVDD- 743 (897)
T ss_pred -------chHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHh-cCCCHHHHHHHHHHHhcccC-
Confidence 2357778888999999999999999874221 23466677 78899999999999997521
Q ss_pred CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011328 190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 269 (488)
Q Consensus 190 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l 269 (488)
.+.+..++.++++.|+..++.+|..+..... ..++.|..++.++++.+|..|+.+|+.+
T Consensus 744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAEL 802 (897)
T ss_pred ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 2446788999999999999999998865432 2367788999999999999999999998
Q ss_pred hcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHH
Q 011328 270 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW 349 (488)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~ 349 (488)
... + .....+...|.++ ++.||..|+.+|+.+.. + ..++.|+.++.+++..||..|++
T Consensus 803 g~~-~---------~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~--~---------~a~~~L~~~L~D~~~~VR~~A~~ 860 (897)
T PRK13800 803 GCP-P---------DDVAAATAALRAS-AWQVRQGAARALAGAAA--D---------VAVPALVEALTDPHLDVRKAAVL 860 (897)
T ss_pred CCc-c---------hhHHHHHHHhcCC-ChHHHHHHHHHHHhccc--c---------chHHHHHHHhcCCCHHHHHHHHH
Confidence 542 1 1235688889888 89999999999998743 2 25688999999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHH
Q 011328 350 AISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE 395 (488)
Q Consensus 350 aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~ 395 (488)
+|+.+. .++. ..+.|...+++++..|+..+..+|.
T Consensus 861 aL~~~~--~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 861 ALTRWP--GDPA---------ARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHhccC--CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 999972 2222 3666778999999999999998886
No 32
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.59 E-value=4.1e-13 Score=118.64 Aligned_cols=238 Identities=19% Similarity=0.217 Sum_probs=183.4
Q ss_pred hhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch
Q 011328 197 QTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 275 (488)
Q Consensus 197 ~~~~~~~~l~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 275 (488)
...+-++.++.+|+. .|+.+++.++.++++.+..+ .....+.+.|+++.+..++.++++.++..|++++.|++...+.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 446778899999985 58999999999999987665 4447788889999999999999999999999999999885443
Q ss_pred hhHHHhhCCChHHHHH-HhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHh
Q 011328 276 QTQCIINHQALPCLLD-LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 354 (488)
Q Consensus 276 ~~~~~~~~~~~~~L~~-lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l 354 (488)
. .. ++. .++.+.+ ....+.+..++..++.+|.|++..+. . ..++. +.++.+++++..++..+|..++.+|.|+
T Consensus 88 ~-~~-Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~-~-~~~l~-~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 88 Q-EQ-IKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND-Y-HHMLA-NYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred H-HH-HHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc-h-hhhHH-hhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3 22 333 3445555 44444478899999999999987522 2 23332 3799999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHCCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhhhhhc---cCCCCccchHHHHHHhhc-cHHHH
Q 011328 355 TSGGSNEQIKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAGEAEKN---MGNTGGVNLFAQAIDDAE-GLEKI 429 (488)
Q Consensus 355 ~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~---~~~~~~~~~~~~~l~~~g-~~~~L 429 (488)
+.+ +...+.++..+++..++.+++.+ +.++...++..+.|+-..-.+... ...+. .+.....|.+.+ .-++|
T Consensus 162 S~n--p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~-~~~L~~~~~e~~~~~~~l 238 (254)
T PF04826_consen 162 SEN--PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFS-EDSLFSLFGESSQLAKKL 238 (254)
T ss_pred ccC--HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCC-chhHHHHHccHHHHHHHH
Confidence 974 58889999999999999999975 578888999999998543322211 11111 223446777666 78899
Q ss_pred HHhhcCCCHHHHHHH
Q 011328 430 ENLQSHDNTEIYEKA 444 (488)
Q Consensus 430 ~~l~~~~~~~v~~~a 444 (488)
..+..|++++|+.++
T Consensus 239 ~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 239 QALANHPDPEVKEQV 253 (254)
T ss_pred HHHHcCCCHHHhhhc
Confidence 999999999999764
No 33
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.57 E-value=1.9e-12 Score=137.11 Aligned_cols=277 Identities=16% Similarity=0.200 Sum_probs=218.9
Q ss_pred cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhH
Q 011328 72 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151 (488)
Q Consensus 72 ~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (488)
...++.|+..|++++ +.+|..|+..|+.+.. .+.++.|...|+++++.+|..|+.+|..+....+
T Consensus 620 ~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~--- 684 (897)
T PRK13800 620 APSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP--- 684 (897)
T ss_pred chhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC---
Confidence 346788999999999 9999999999998753 2468899999999999999999999988853222
Q ss_pred HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011328 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 231 (488)
Q Consensus 152 ~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 231 (488)
..+.+...| ++.++.++..++.+|..+.... ...++..+.++++.++..++.+|..+-.
T Consensus 685 -------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-- 743 (897)
T PRK13800 685 -------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD-- 743 (897)
T ss_pred -------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC--
Confidence 124566777 6789999999999998865321 2457788999999999999999997521
Q ss_pred chhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011328 232 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 311 (488)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n 311 (488)
.+.|...+.++++.+|..++.+|+.+..... ..++.|..+++++ ++.+|..|+.+|++
T Consensus 744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg~ 801 (897)
T PRK13800 744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALAE 801 (897)
T ss_pred ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHHh
Confidence 2346678999999999999999998865322 2367788999998 89999999999998
Q ss_pred HhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHH
Q 011328 312 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCL 391 (488)
Q Consensus 312 l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al 391 (488)
+... +. ..+.+...+.++++.||..|+.+|..+... ..++.|..+++++++.||..++
T Consensus 802 ~g~~-~~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~~~~VR~~A~ 859 (897)
T PRK13800 802 LGCP-PD---------DVAAATAALRASAWQVRQGAARALAGAAAD------------VAVPALVEALTDPHLDVRKAAV 859 (897)
T ss_pred cCCc-ch---------hHHHHHHHhcCCChHHHHHHHHHHHhcccc------------chHHHHHHHhcCCCHHHHHHHH
Confidence 8543 11 335578889999999999999999987421 2468899999999999999999
Q ss_pred HHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 011328 392 EGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET 450 (488)
Q Consensus 392 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~ 450 (488)
.+|..+ ..+. ...+.|...+++++.+|+..|...|+.
T Consensus 860 ~aL~~~--~~~~--------------------~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 860 LALTRW--PGDP--------------------AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHhcc--CCCH--------------------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 999885 1110 114557788889999999999998864
No 34
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.54 E-value=7.7e-13 Score=133.87 Aligned_cols=361 Identities=17% Similarity=0.214 Sum_probs=254.2
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011328 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
.++.+.+.|.++++.++-.|++++.++... +.. ..+++.+.+++.+++ +.+|..|+.++..+...+|+...
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~---~~~-----~~l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~~~ 150 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRTP---EMA-----EPLIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDLVE 150 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-SH---HHH-----HHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCCHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhccc---chh-----hHHHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHHHH
Confidence 567788889999999999999999997632 222 236788899999999 99999999999999886555432
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc---ccccHhHHHHHHHHHHHhh
Q 011328 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFC 187 (488)
Q Consensus 111 ~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~~v~~~a~~~L~~l~ 187 (488)
.. .++.+.+++.+.++.++..|+.++..+ ..++.... ..++.++..+. ...++-.+..++..+..++
T Consensus 151 ---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-----~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~ 220 (526)
T PF01602_consen 151 ---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-----SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA 220 (526)
T ss_dssp ---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-----THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred ---HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-----hhHHHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence 12 589999999889999999999999999 22221100 23444444432 5678888888888888776
Q ss_pred cCCCCCChhhh--hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHH
Q 011328 188 RGKPQPLFEQT--RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265 (488)
Q Consensus 188 ~~~~~~~~~~~--~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~ 265 (488)
...+ ... ..+++.+..++++.++.|...++.++..+..... .-..+++.+..++.++++.++..++..
T Consensus 221 ~~~~----~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~ 290 (526)
T PF01602_consen 221 PMEP----EDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDS 290 (526)
T ss_dssp SSSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred cCCh----hhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHH
Confidence 5431 222 5688888899998899999999999998876543 223677889999999899999999999
Q ss_pred HhHhhcCCchhhHHHhhCCChHHHHHHhc-ccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCChhH
Q 011328 266 VGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-NAEFEI 343 (488)
Q Consensus 266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v 343 (488)
|..++...+.. + . .....+..+. ++ +..+|..++.++..++. +.+... +++.|...+. .++.++
T Consensus 291 L~~l~~~~~~~---v-~--~~~~~~~~l~~~~-d~~Ir~~~l~lL~~l~~--~~n~~~-----Il~eL~~~l~~~~d~~~ 356 (526)
T PF01602_consen 291 LSQLAQSNPPA---V-F--NQSLILFFLLYDD-DPSIRKKALDLLYKLAN--ESNVKE-----ILDELLKYLSELSDPDF 356 (526)
T ss_dssp HHHHCCHCHHH---H-G--THHHHHHHHHCSS-SHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHHC--HHH
T ss_pred HHHhhcccchh---h-h--hhhhhhheecCCC-ChhHHHHHHHHHhhccc--ccchhh-----HHHHHHHHHHhccchhh
Confidence 99999865222 2 2 2233344555 55 88999999999999975 343333 5667888884 448889
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhh
Q 011328 344 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 423 (488)
Q Consensus 344 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 423 (488)
+..++.+++.++....+.. . -.++.+.+++...+..+...+...+.+++...+..+ ...
T Consensus 357 ~~~~i~~I~~la~~~~~~~-~-----~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~-----------~~~---- 415 (526)
T PF01602_consen 357 RRELIKAIGDLAEKFPPDA-E-----WYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELR-----------EKI---- 415 (526)
T ss_dssp HHHHHHHHHHHHHHHGSSH-H-----HHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH-----------HHH----
T ss_pred hhhHHHHHHHHHhccCchH-H-----HHHHHHHHhhhhccccccchHHHHHHHHhhcChhhh-----------HHH----
Confidence 9999999999985332111 1 146778888887777777777777777776544321 111
Q ss_pred ccHHHHHHhh-cCCCHHHHHHHHHHHHHhcCCCCC
Q 011328 424 EGLEKIENLQ-SHDNTEIYEKAVKILETYWVEEDE 457 (488)
Q Consensus 424 g~~~~L~~l~-~~~~~~v~~~a~~~l~~~~~~~~~ 457 (488)
++.+.++. +-.++++...+.+++..|-+..++
T Consensus 416 --l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~ 448 (526)
T PF01602_consen 416 --LKKLIELLEDISSPEALAAAIWILGEYGELIEN 448 (526)
T ss_dssp --HHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT
T ss_pred --HHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc
Confidence 33334443 356778888888888887766444
No 35
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=6.9e-13 Score=125.82 Aligned_cols=319 Identities=18% Similarity=0.237 Sum_probs=217.5
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcC----ChHHHHHHhcccccHhHHHHHHHHHHHhhcCCC
Q 011328 116 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG----ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 191 (488)
Q Consensus 116 g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~----~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~ 191 (488)
.++|.|..+|.+++....+.|..+|..+|++++..-+.-.... .++.++++. +++++.+|..|+.++..+.....
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~-~h~spkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFF-KHPSPKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHH-hCCChhHHHHHHhhhhheeecCc
Confidence 3689999999999999999999999999999875433321122 356666777 78899999999999988877655
Q ss_pred CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011328 192 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 271 (488)
Q Consensus 192 ~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 271 (488)
..-......++..+..+-.+++++||...|.++..+.+..+++...-.. ++++.++...++.+++|...|+.....++.
T Consensus 207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~-~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLD-NIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchH-HHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 5555566788888888888899999999999999999776655443333 677888888888899999999999999987
Q ss_pred CCchhhHHHhh---CCChHHHHHHhcccc----------h--------hhHHH---------------------------
Q 011328 272 GDDMQTQCIIN---HQALPCLLDLLTQNY----------K--------KSIKK--------------------------- 303 (488)
Q Consensus 272 ~~~~~~~~~~~---~~~~~~L~~lL~~~~----------~--------~~v~~--------------------------- 303 (488)
.. ..+.++. ..++|.|+.-+..++ + .++|-
T Consensus 286 qp--i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDd 363 (885)
T KOG2023|consen 286 QP--ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDD 363 (885)
T ss_pred Cc--CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccc
Confidence 43 2222221 134555544332110 0 00000
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHcCC----hHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHh
Q 011328 304 --EACWTISNITAGNVNQIQAIIEAGI----IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 377 (488)
Q Consensus 304 --~a~~~L~nl~~~~~~~~~~l~~~~~----l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ 377 (488)
..-|-|..++...-+....++...+ +|.|-+.|.+.++.+|+.+.-||+.++.++-....+.+-+ +++.|+.
T Consensus 364 D~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lpe--Lip~l~~ 441 (885)
T KOG2023|consen 364 DAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPE--LIPFLLS 441 (885)
T ss_pred cccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHH--HHHHHHH
Confidence 0012232222222222222333334 4555555566789999999999999998876555666544 7999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011328 378 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 452 (488)
Q Consensus 378 ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~ 452 (488)
+|++..+-+|...+|.|++....--..+... -|...+ +.|.+-.-+.|.+|+++|......+-
T Consensus 442 ~L~DKkplVRsITCWTLsRys~wv~~~~~~~------~f~pvL------~~ll~~llD~NK~VQEAAcsAfAtle 504 (885)
T KOG2023|consen 442 LLDDKKPLVRSITCWTLSRYSKWVVQDSRDE------YFKPVL------EGLLRRLLDSNKKVQEAACSAFATLE 504 (885)
T ss_pred HhccCccceeeeeeeeHhhhhhhHhcCChHh------hhHHHH------HHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999998876544332110 023333 33344445668999999988777663
No 36
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.51 E-value=1.1e-12 Score=116.09 Aligned_cols=196 Identities=19% Similarity=0.238 Sum_probs=162.6
Q ss_pred HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch
Q 011328 70 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 149 (488)
Q Consensus 70 ~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~ 149 (488)
.+.+-++.|+.+|+..++|.+++.++.++++.+. .+.+++.+.+.|+++.+..++.++++.++..|++++.|++...+.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 4556789999999976559999999999999987 889999999999999999999999999999999999999877654
Q ss_pred hHHHHHhcCChHHHHHHhcc-cccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 011328 150 CRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 228 (488)
Q Consensus 150 ~~~~~~~~~~l~~L~~ll~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~ 228 (488)
+..+.. .+..+++.... .-+..++..++.+|.+|+....... ...+.++.++.++.+++..++..++++|.|++
T Consensus 88 -~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~--~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 88 -QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHH--MLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred -HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhh--hHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 344332 46666665433 3477899999999999987653322 23568999999999999999999999999999
Q ss_pred cCCchhHHHHHHhCCHHHHHHhcCCC-CcchHhHHHHHHhHhhcC
Q 011328 229 DGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTG 272 (488)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~ 272 (488)
.++. ..+.++..+++..++.++... ..++...++..+.|+..+
T Consensus 163 ~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 163 ENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred cCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 8875 446688889999999999875 677889999999999764
No 37
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.49 E-value=7.9e-11 Score=119.25 Aligned_cols=359 Identities=18% Similarity=0.212 Sum_probs=253.4
Q ss_pred HHHHHhcCC--CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHH
Q 011328 34 AMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 111 (488)
Q Consensus 34 ~l~~~L~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 111 (488)
.+.+.+.+. +...+..++.-+..+.... .+. ..+.+.+++++.+.+ ...+.-+-..+..+...+++....
T Consensus 8 el~~~~~~~~~~~~~~~~~l~kli~~~~~G-~~~------~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~~~~~l 79 (526)
T PF01602_consen 8 ELAKILNSFKIDISKKKEALKKLIYLMMLG-YDI------SFLFMEVIKLISSKD-LELKRLGYLYLSLYLHEDPELLIL 79 (526)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSSS-HHHHHHHHHHHHHHTTTSHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CCC------chHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhcchhHHHH
Confidence 455556555 7777777777777765443 221 257888899999888 899999999999999866663222
Q ss_pred HHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCC
Q 011328 112 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 191 (488)
Q Consensus 112 ~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~ 191 (488)
++..+.+=+.++++.+|..|++++++++ .++..+. .++.+.+++ .++++.+|+.|+.++..+....+
T Consensus 80 -----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p 146 (526)
T PF01602_consen 80 -----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLL-SDPSPYVRKKAALALLKIYRKDP 146 (526)
T ss_dssp -----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCH
T ss_pred -----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHh-cCCchHHHHHHHHHHHHHhccCH
Confidence 3678888899999999999999999997 2332222 456777777 78899999999999999987743
Q ss_pred CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011328 192 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 271 (488)
Q Consensus 192 ~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 271 (488)
.. .... +++.+.+++.+.++.++..|+.++..+ ..++.....+. ...+..|.+++...+|..+..++.++..++.
T Consensus 147 ~~--~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~ 221 (526)
T PF01602_consen 147 DL--VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAP 221 (526)
T ss_dssp CC--HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred HH--HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence 32 1112 689999999999999999999999999 33322211111 2455666666788899999999999999987
Q ss_pred CCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHH
Q 011328 272 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 351 (488)
Q Consensus 272 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL 351 (488)
..+..... ..+++.+...+++. ++.|..+++.++..+... +. .-..+++.|..++.++++.++..++.+|
T Consensus 222 ~~~~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~-~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L 291 (526)
T PF01602_consen 222 MEPEDADK---NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPS-PE-----LLQKAINPLIKLLSSSDPNVRYIALDSL 291 (526)
T ss_dssp SSHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSS-HH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred CChhhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcc-hH-----HHHhhHHHHHHHhhcccchhehhHHHHH
Confidence 66544421 35678888899888 999999999999988765 33 2234788899999999999999999999
Q ss_pred HHhccCCCHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHH
Q 011328 352 SNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIE 430 (488)
Q Consensus 352 ~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~ 430 (488)
..++... +. .+ . ........+. +++..++..++..|..++.... +... ++.|.
T Consensus 292 ~~l~~~~-~~---~v-~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n-------------~~~I------l~eL~ 345 (526)
T PF01602_consen 292 SQLAQSN-PP---AV-F--NQSLILFFLLYDDDPSIRKKALDLLYKLANESN-------------VKEI------LDELL 345 (526)
T ss_dssp HHHCCHC-HH---HH-G--THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH-------------HHHH------HHHHH
T ss_pred HHhhccc-ch---hh-h--hhhhhhheecCCCChhHHHHHHHHHhhcccccc-------------hhhH------HHHHH
Confidence 9998754 11 11 1 2223333444 7889999999999998886544 1222 33344
Q ss_pred Hhh-cCCCHHHHHHHHHHHHHhcCC
Q 011328 431 NLQ-SHDNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 431 ~l~-~~~~~~v~~~a~~~l~~~~~~ 454 (488)
... +..+++++..+...+..+...
T Consensus 346 ~~l~~~~d~~~~~~~i~~I~~la~~ 370 (526)
T PF01602_consen 346 KYLSELSDPDFRRELIKAIGDLAEK 370 (526)
T ss_dssp HHHHHC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHhccchhhhhhHHHHHHHHHhc
Confidence 444 455666777776666655443
No 38
>PTZ00429 beta-adaptin; Provisional
Probab=99.48 E-value=2.5e-10 Score=115.94 Aligned_cols=372 Identities=13% Similarity=0.108 Sum_probs=228.1
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011328 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
.++.+++++.+.|..++...--.+.+.+... ++.. + -++..+.+=+++++ +.+|..|+++++++-. ++...
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~-pela--l---LaINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e 139 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQ-PEKA--L---LAVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLE 139 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-hHHH--H---HHHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHH
Confidence 3445666777777777777777777765432 2211 1 14667777788888 8999999999988765 33333
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC
Q 011328 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 190 (488)
Q Consensus 111 ~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~ 190 (488)
. +++.+.+.+.+.++-||..|+.++..+...+++ .+.+.+.++.+.+++ .+.++.+..+|+.+|..+....
T Consensus 140 ~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 140 Y-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred H-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhC
Confidence 3 357778888899999999999999999776553 344556778888887 7889999999999999998765
Q ss_pred CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhh
Q 011328 191 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 270 (488)
Q Consensus 191 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~ 270 (488)
+. ......+.+..++..+..-++..+...+.+|......++... ..++..+...|++.++.|...|++++.++.
T Consensus 211 ~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 211 SE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred ch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 43 234456667777777777778888888888866433222221 256788888899999999999999999887
Q ss_pred cCC-chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH------------------------
Q 011328 271 TGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE------------------------ 325 (488)
Q Consensus 271 ~~~-~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~------------------------ 325 (488)
... +.....+.. .+...++.++ ++ ++++|..++..+.-+....+.....-++
T Consensus 285 ~~~~~~~~~~~~~-rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~La 361 (746)
T PTZ00429 285 SRCSQELIERCTV-RVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLV 361 (746)
T ss_pred CcCCHHHHHHHHH-HHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHc
Confidence 542 222222211 2334455554 34 5677877777776665544432221110
Q ss_pred -----cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011328 326 -----AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 326 -----~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~ 400 (488)
..++..|.....+.+.+++..+..+++.++..-. .... .++..|.++++.... +...++..+.+++..
T Consensus 362 ne~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~-~~a~-----~cV~~Ll~ll~~~~~-~v~e~i~vik~Ilrk 434 (746)
T PTZ00429 362 TPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD-SVAP-----DCANLLLQIVDRRPE-LLPQVVTAAKDIVRK 434 (746)
T ss_pred CcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh-HHHH-----HHHHHHHHHhcCCch-hHHHHHHHHHHHHHH
Confidence 0122333333334455556666666666654321 1111 245566665554332 233445555555443
Q ss_pred hhhhhccCCCCccchHHHHHHhhccHHHHHHh---hcCCCHHHHHHHHHHHHHhcCCC
Q 011328 401 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL---QSHDNTEIYEKAVKILETYWVEE 455 (488)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l---~~~~~~~v~~~a~~~l~~~~~~~ 455 (488)
.+. .. .+..|... ..-.+++.+....|++..|-+.-
T Consensus 435 yP~-------------~~------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I 473 (746)
T PTZ00429 435 YPE-------------LL------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFI 473 (746)
T ss_pred Ccc-------------HH------HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhH
Confidence 221 00 12222221 12345667777788888886543
No 39
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.48 E-value=1.1e-10 Score=110.00 Aligned_cols=322 Identities=14% Similarity=0.177 Sum_probs=230.1
Q ss_pred CCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhc-----CChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328 116 GAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSN-----GALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 116 g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
..+..++.++.. ..+++.+..+..+..+....+.....+.+. ....+++.+| ...|.-+...++..|..+...
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL-~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL-NRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH-cCCchhHHHHHHHHHHHHHhc
Confidence 456677777765 678899999999999988877655555553 4567788888 567888999999999998866
Q ss_pred CCCCCh-hhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC--CcchHhHHHHH
Q 011328 190 KPQPLF-EQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRT 265 (488)
Q Consensus 190 ~~~~~~-~~~~~~~~~l~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~ 265 (488)
.+.... ......++.+...++++ +...+..++.++..+...+..+ ..+.+.++++.|+++|+.. ..+++..++.+
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 532211 12223455666666654 4677778889999998877544 6677888999999999763 45788899999
Q ss_pred HhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC------HHHHHHHHHcCChHHHHHHHhcC
Q 011328 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN------VNQIQAIIEAGIIGPLVNLLLNA 339 (488)
Q Consensus 266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~------~~~~~~l~~~~~l~~L~~ll~~~ 339 (488)
++-++...+ ........++++.++++++.....++-+-++.++.|+...+ ......+++.|+.+.+-.+-..+
T Consensus 211 lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk 289 (429)
T cd00256 211 IWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRK 289 (429)
T ss_pred HHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCC
Confidence 999998544 44555677999999999988778899999999999999832 22344566766666554444433
Q ss_pred --ChhHHHHHHHH-------HHHhccCC------------------C----HHHHHHHHHC--CChHHHHhhcC-CCCHH
Q 011328 340 --EFEIKKEAAWA-------ISNATSGG------------------S----NEQIKFLVSQ--GCIKPLCDLLN-CPDPR 385 (488)
Q Consensus 340 --~~~v~~~a~~a-------L~~l~~~~------------------~----~~~~~~l~~~--~~i~~L~~ll~-~~~~~ 385 (488)
|+++....-.. +..++... + .++...+.++ .++..|.++++ +.|+.
T Consensus 290 ~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~ 369 (429)
T cd00256 290 YDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI 369 (429)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence 55543222111 11111100 1 2334444444 34788888885 56777
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011328 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 452 (488)
Q Consensus 386 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~ 452 (488)
+...|+.=++.+++.-+. .+..+.+.|+-+.+.++++++|++|+..|...+.++.
T Consensus 370 ~laVAc~Dige~vr~~P~------------gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 370 ILAVACHDIGEYVRHYPR------------GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred eeehhhhhHHHHHHHCcc------------HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 888888888988887654 3777889999999999999999999999999988764
No 40
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.44 E-value=5.7e-11 Score=111.92 Aligned_cols=323 Identities=11% Similarity=0.076 Sum_probs=228.8
Q ss_pred cHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHc-----CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCC
Q 011328 31 SLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQS-----GVVPRFIEFLSRDDFPQLQFEAAWALTNIASG 104 (488)
Q Consensus 31 ~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-----~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~ 104 (488)
....++++|+. ..+++....+..+..++... +.....+.+. +....++.+|..++ .-+...|+.+++.+...
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhc
Confidence 35567777764 66788888999999988765 4555555543 56788888998888 79999999999999874
Q ss_pred CchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc-cHhHHHHHHHH
Q 011328 105 TSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-KLSMLRNATWT 182 (488)
Q Consensus 105 ~~~~~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~ 182 (488)
++.........-.++.+...+++ .+...+..++.++..+....+ +|..+.+.++++.|+..|.... +.+++..++.+
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 44322111111123445555655 357788888999999987655 7888888889999999996544 66899999999
Q ss_pred HHHhhcCCCCCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCCc------hhHHHHHHhCCHHHHHHhcCC--
Q 011328 183 LSNFCRGKPQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTN------DKIQAVIEAGVCPRLVELLRH-- 253 (488)
Q Consensus 183 L~~l~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~v~~~al~~L~~l~~~~~------~~~~~~~~~~~l~~L~~lL~~-- 253 (488)
++-++...+........+.++.++++++. ...++..-++.++.|+...+. .....++..++++.+-.+...
T Consensus 211 lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~ 290 (429)
T cd00256 211 IWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY 290 (429)
T ss_pred HHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence 99999876544444557899999999985 478999999999999997431 233445665665544444333
Q ss_pred CCcchHhHHHH-------HHhHhhcC--------------Cch---------hhHHHhh--CCChHHHHHHhcccchhhH
Q 011328 254 PSPSVLIPALR-------TVGNIVTG--------------DDM---------QTQCIIN--HQALPCLLDLLTQNYKKSI 301 (488)
Q Consensus 254 ~~~~v~~~a~~-------~L~~l~~~--------------~~~---------~~~~~~~--~~~~~~L~~lL~~~~~~~v 301 (488)
.++++....-. .+..++.. +|. +...+-+ ..++..|+++|..+.++.+
T Consensus 291 ~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~ 370 (429)
T cd00256 291 DDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPII 370 (429)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcce
Confidence 34444332211 11112210 111 1122222 2357889999965547888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011328 302 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 302 ~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
..-||.=++.++...|..+..+-+.|+=..+++++.++|++||.+|+.|+..+..
T Consensus 371 laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 371 LAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred eehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 8899999999999778777777788999999999999999999999999998864
No 41
>PTZ00429 beta-adaptin; Provisional
Probab=99.44 E-value=1.5e-09 Score=110.33 Aligned_cols=294 Identities=14% Similarity=0.093 Sum_probs=207.7
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
|-+..|-+.|.+.+...+..+++.+....... .+.. .+++..++++.+++ .++|.-+...+.+++...++..
T Consensus 32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~DvS------~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pela 103 (746)
T PTZ00429 32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDVS------YLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKA 103 (746)
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCch------HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHH
Confidence 56677888888888888888888766655443 2322 35677788889888 8999999999999988666543
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
-. .++.+.+=+.++++.+|..|+++++++-. +...+. .+..+.+.+ .+.++-||+.|+.++.++...
T Consensus 104 lL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L-~D~~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 104 LL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAV-ADPDPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred HH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhh
Confidence 22 36888888889999999999999999843 222222 345566667 788999999999999999876
Q ss_pred CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011328 190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 269 (488)
Q Consensus 190 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l 269 (488)
.+ ......+.++.+.+++.+.|+.|...|+.+|..+....+.... ...+.+..++..+..-++..+...+.+|...
T Consensus 171 ~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y 246 (746)
T PTZ00429 171 DM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQ 246 (746)
T ss_pred Cc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc
Confidence 54 2334457888999999999999999999999999876554322 2335567777778777777888888877553
Q ss_pred hcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHH
Q 011328 270 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA 348 (488)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 348 (488)
.-.++... ..++..+...|++. ++.|..+|+.++.++... +++....... .+-+.++.+ .+++++++-.++
T Consensus 247 ~P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L-~ss~~eiqyvaL 318 (746)
T PTZ00429 247 RPSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTL-SRRDAETQYIVC 318 (746)
T ss_pred CCCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHh-hCCCccHHHHHH
Confidence 32222111 24677888888898 899999999999988763 2333333222 133445554 344566666666
Q ss_pred HHHHHhcc
Q 011328 349 WAISNATS 356 (488)
Q Consensus 349 ~aL~~l~~ 356 (488)
..+.-++.
T Consensus 319 r~I~~i~~ 326 (746)
T PTZ00429 319 KNIHALLV 326 (746)
T ss_pred HHHHHHHH
Confidence 66655544
No 42
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.44 E-value=3.6e-12 Score=101.38 Aligned_cols=119 Identities=35% Similarity=0.621 Sum_probs=109.9
Q ss_pred HHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC
Q 011328 68 EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147 (488)
Q Consensus 68 ~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~ 147 (488)
.+++.|+++.+++++.+++ .+++..++++|.+++..+++.+..+.+.|+++.++.++.++++.++..++++|++++.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 3567899999999999998 899999999999999977999999999999999999999999999999999999999988
Q ss_pred chhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328 148 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 148 ~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 188 (488)
+.....+.+.|.++.+++.+ .+.+..++..++++|.+++.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 77778888899999999999 66688999999999999873
No 43
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=3.2e-11 Score=116.52 Aligned_cols=361 Identities=15% Similarity=0.099 Sum_probs=240.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011328 34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 113 (488)
Q Consensus 34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 113 (488)
.++..|++..|...-.|+.++..++..+ -+.. ...++++.|+....++....++..++.+++-+|.+-......-.
T Consensus 94 ~il~tL~~~ep~~~s~Aaq~va~IA~~E-lP~n---~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~ 169 (859)
T KOG1241|consen 94 NILRTLGSPEPRRPSSAAQCVAAIACIE-LPQN---QWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQ 169 (859)
T ss_pred HHHHHcCCCCCCccchHHHHHHHHHHhh-Cchh---hCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 5778888888888888888998888765 2211 12345666666666666346999999999999984322222222
Q ss_pred hCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCC
Q 011328 114 DHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 191 (488)
Q Consensus 114 ~~g~i~~L~~~L~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~ 191 (488)
.+.++..++.-.+. ++..+|-.|+.+|.|-.+.....-..-.+.+.+...+--.-+++|.+++..|..+|..+..-..
T Consensus 170 sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY 249 (859)
T KOG1241|consen 170 SNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYY 249 (859)
T ss_pred HhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHH
Confidence 34667777776665 6889999999999986543322222223333333333222367899999999999998876431
Q ss_pred CC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchh---------------HHHHHH---hCCHHHHHHhcC
Q 011328 192 QP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK---------------IQAVIE---AGVCPRLVELLR 252 (488)
Q Consensus 192 ~~-~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~---------------~~~~~~---~~~l~~L~~lL~ 252 (488)
.. ..-.....+..-+..+++++++|...++..-++++...-+. ...+.+ .+++|.|+++|.
T Consensus 250 ~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~ 329 (859)
T KOG1241|consen 250 EFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLT 329 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHH
Confidence 11 11122335666667778999999999999999888532210 011111 156788888885
Q ss_pred C-------CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011328 253 H-------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 325 (488)
Q Consensus 253 ~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 325 (488)
+ .++.....|-.||.-++...... ++. .+++.+-.-++++ +++-|..|+.+++.+..+.......-+.
T Consensus 330 kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~-~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~iV 404 (859)
T KOG1241|consen 330 KQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP-HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPIV 404 (859)
T ss_pred hCCCCcccccCcHHHHHHHHHHHHHHHhccc---chh-hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHHH
Confidence 4 23567777777777766533221 222 4556666677788 9999999999999999865444444455
Q ss_pred cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 011328 326 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAE 404 (488)
Q Consensus 326 ~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~ 404 (488)
.+.+|.++.++.++...++..+.|+|+.++..............+.+..+..-+. +.|.+..+++|++.++.+...+.
T Consensus 405 ~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA 482 (859)
T KOG1241|consen 405 IQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEA 482 (859)
T ss_pred hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHh
Confidence 6799999999998888999999999999997653222222233345566666555 46788899999999998655443
No 44
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.40 E-value=6.9e-12 Score=99.76 Aligned_cols=117 Identities=33% Similarity=0.505 Sum_probs=109.5
Q ss_pred HHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCH
Q 011328 238 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 317 (488)
Q Consensus 238 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 317 (488)
+++.|+++.+++++.+.++.++..++++|++++...+.....+.+.++++.+.+++.++ ++.++..++++++|++...+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence 56779999999999999999999999999999998888888888999999999999998 99999999999999999877
Q ss_pred HHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011328 318 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 355 (488)
Q Consensus 318 ~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~ 355 (488)
.....+.+.|+++.+++++...+.++++.++++|.+++
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 77888889999999999999999999999999999986
No 45
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=3.3e-10 Score=110.85 Aligned_cols=343 Identities=15% Similarity=0.173 Sum_probs=248.6
Q ss_pred ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328 30 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 30 ~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
..+|.|+.+|+. .++++...|+++|..+..-- +.....+++.++||.|++-|..-.+-++.++++.+|-.|+...
T Consensus 211 slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--- 286 (1051)
T KOG0168|consen 211 SLVPVLVALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--- 286 (1051)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc---
Confidence 457889999996 57999999999999988765 5667788899999999998888777899999999999998833
Q ss_pred hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC-chhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011328 109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 187 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~ 187 (488)
-..+++.|.+...+.++.--+...++.|+.+.+|.|..- ++-...+++ .++.|..+| ...|....+.++.++..++
T Consensus 287 ~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 287 PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLL-SYQDKKPIESVCICLTRIA 363 (1051)
T ss_pred cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHHH
Confidence 356778999999999998888999999999999999532 222234444 688888888 7778888999999999988
Q ss_pred cCC-CCC---ChhhhhchHHHHHHhhccC----ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCC----
Q 011328 188 RGK-PQP---LFEQTRPALPALERLIHSN----DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS---- 255 (488)
Q Consensus 188 ~~~-~~~---~~~~~~~~~~~l~~ll~~~----~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~---- 255 (488)
... +.. ......+.+....+++.-. +..+....++.+..++...+.....+.+.++...+..+|...+
T Consensus 364 d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~n 443 (1051)
T KOG0168|consen 364 DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSAN 443 (1051)
T ss_pred HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcc
Confidence 765 222 2233367888888887643 3445666777788888887777777777777777777764311
Q ss_pred ----------cchHhHHH----------------------------------------------------HHHhHhh---
Q 011328 256 ----------PSVLIPAL----------------------------------------------------RTVGNIV--- 270 (488)
Q Consensus 256 ----------~~v~~~a~----------------------------------------------------~~L~~l~--- 270 (488)
|.-..... +++..+-
T Consensus 444 as~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~ 523 (1051)
T KOG0168|consen 444 ASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDT 523 (1051)
T ss_pred cccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCc
Confidence 00000000 0011000
Q ss_pred -------------------cCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHcC-Ch
Q 011328 271 -------------------TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAG-II 329 (488)
Q Consensus 271 -------------------~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~-~l 329 (488)
...++..+.+.. .+++.|+++..+.-++.||..++.+|..+.. .+.+.+..++... +-
T Consensus 524 ~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vS 602 (1051)
T KOG0168|consen 524 GTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVS 602 (1051)
T ss_pred ccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHH
Confidence 000011111111 4678888888877799999999999999988 6788888887644 45
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC
Q 011328 330 GPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 380 (488)
Q Consensus 330 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~ 380 (488)
..+-.+|.+++..+..-|+...--++..-..-+...+...|++..+-++..
T Consensus 603 S~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 603 SHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred HHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence 566678888888887777777777776554456677788888888888776
No 46
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=4.9e-10 Score=108.59 Aligned_cols=329 Identities=14% Similarity=0.144 Sum_probs=224.1
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011328 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
.+|.+-+.++++|..-+..|+.++..++.+. .+....-+..+++|.+++++.++. .-++..+.|+++.++...++.+.
T Consensus 365 Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp-~~~~Lt~iV~qalp~ii~lm~D~s-l~VkdTaAwtlgrI~d~l~e~~~ 442 (859)
T KOG1241|consen 365 VLPFIEENIQNPDWRNREAAVMAFGSILEGP-EPDKLTPIVIQALPSIINLMSDPS-LWVKDTAAWTLGRIADFLPEAII 442 (859)
T ss_pred hHHHHHHhcCCcchhhhhHHHHHHHhhhcCC-chhhhhHHHhhhhHHHHHHhcCch-hhhcchHHHHHHHHHhhchhhcc
Confidence 4566666888999999999999999998876 444444455689999999999877 78999999999999997775443
Q ss_pred H-HHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchh-----HHHHHhcCChHHHHHHhc------ccccHhHHHH
Q 011328 111 V-VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC-----RDLVLSNGALMPLLAQFN------EHAKLSMLRN 178 (488)
Q Consensus 111 ~-~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~~~~~~~l~~L~~ll~------~~~~~~v~~~ 178 (488)
. ....+.++.++.-|. +.|.+..+++|++.+|+..-++. +....+ ...+.++.-|. +..+...|..
T Consensus 443 n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~A 520 (859)
T KOG1241|consen 443 NQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSA 520 (859)
T ss_pred cHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHH
Confidence 2 223344555555554 46899999999999998321110 000111 23334444332 2245678899
Q ss_pred HHHHHHHhhcCCCCCChhhhhchHHHHHHhh---------ccCC----hhHHHHHHHHHHHhccCCchhHHHHHHhCCHH
Q 011328 179 ATWTLSNFCRGKPQPLFEQTRPALPALERLI---------HSND----DEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 245 (488)
Q Consensus 179 a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll---------~~~~----~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~ 245 (488)
+..+|..+....+........+....+..-| ...+ .+++...+.+|..+.......+..+.+ .++.
T Consensus 521 AYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d-~iM~ 599 (859)
T KOG1241|consen 521 AYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD-QIMG 599 (859)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH-HHHH
Confidence 9999999999886666665555555555422 1111 456677777777777544433343433 5778
Q ss_pred HHHHhcCC-CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHH
Q 011328 246 RLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 324 (488)
Q Consensus 246 ~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 324 (488)
.+++++.+ .+..+.+.|+.+++.++..-......-.. .+.|.|..-|++..+..|...|+..++.+++.-.+.+..+.
T Consensus 600 lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~-~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~ 678 (859)
T KOG1241|consen 600 LFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMP-AFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYC 678 (859)
T ss_pred HHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 88888887 45568888998888888754444333333 57788888886665888999999999999985444444444
Q ss_pred HcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCCHHHHHHH
Q 011328 325 EAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFL 366 (488)
Q Consensus 325 ~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l 366 (488)
+ +++..|+..|+++ +.+||-..+.+++.++.....++.+++
T Consensus 679 d-~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl 721 (859)
T KOG1241|consen 679 D-ELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYL 721 (859)
T ss_pred H-HHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHH
Confidence 3 5788889999887 667777888888887765544444443
No 47
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.30 E-value=1.1e-09 Score=105.66 Aligned_cols=391 Identities=14% Similarity=0.161 Sum_probs=251.1
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCC-hhHHHHHHHHHHHhcCCCchh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF-PQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-~~v~~~a~~~L~~l~~~~~~~ 108 (488)
..+.+++..++++.++.+..++....++...-.....+.-.+.-.+..++..++..+. ..+-.....++.+-...
T Consensus 716 ~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~---- 791 (1172)
T KOG0213|consen 716 PIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG---- 791 (1172)
T ss_pred HHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh----
Confidence 3466678888899999999999998888776544445555555667777777776552 22222333333222221
Q ss_pred hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhH--HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHh
Q 011328 109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR--DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 186 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l 186 (488)
|-.-.-.-++..++..|++.++.+|..|+..++.++..-..|. +.+...|. .|.+.| ....+++.-..+.++..+
T Consensus 792 r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI 868 (1172)
T KOG0213|consen 792 RVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAI 868 (1172)
T ss_pred ccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHH
Confidence 1111111346677788999999999999999999874322221 12222222 456666 677889988888888887
Q ss_pred hcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHH
Q 011328 187 CRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265 (488)
Q Consensus 187 ~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~ 265 (488)
.... -.+...-..+++|.|..+|++...+++++++..++.++...++....---..+.--|+++|...+.++|++|..+
T Consensus 869 ~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nT 948 (1172)
T KOG0213|consen 869 VNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNT 948 (1172)
T ss_pred HHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7654 222333457899999999999999999999999999998776543321112333446777777788899999999
Q ss_pred HhHhhcCCch--hhH----------------------HHhh-C---CChHHHHHHhcccchhhHHHHHHHHHHHHhcC-C
Q 011328 266 VGNIVTGDDM--QTQ----------------------CIIN-H---QALPCLLDLLTQNYKKSIKKEACWTISNITAG-N 316 (488)
Q Consensus 266 L~~l~~~~~~--~~~----------------------~~~~-~---~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~ 316 (488)
++.++..-.. ... .+.+ . .++|.|+.=-..+ +..|+...+.+++.+... .
T Consensus 949 fG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP-e~nVQnGVLkalsf~Feyig 1027 (1172)
T KOG0213|consen 949 FGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP-EANVQNGVLKALSFMFEYIG 1027 (1172)
T ss_pred hhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc-hhHHHHhHHHHHHHHHHHHH
Confidence 9988853110 000 0001 1 2345555555556 777888888888877652 1
Q ss_pred HHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC-------CCCHHHHHH
Q 011328 317 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-------CPDPRIVTV 389 (488)
Q Consensus 317 ~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-------~~~~~v~~~ 389 (488)
....+.+.. +.|.|-..|.+.|..-|+.|+.++.+++.+.. ..|..+.++.+|+ ++.|.++..
T Consensus 1028 emskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~--------g~g~eda~iHLLN~iWpNIle~sPhviqa 1097 (1172)
T KOG0213|consen 1028 EMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLALGVP--------GTGCEDALIHLLNLIWPNILETSPHVIQA 1097 (1172)
T ss_pred HHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHhcCCC--------CcCcHHHHHHHHHHhhhhhcCCChHHHHH
Confidence 222233332 67788888888899999999999999987641 1244555555544 456777776
Q ss_pred HHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 011328 390 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDE 457 (488)
Q Consensus 390 al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 457 (488)
..+++..+- ..+...-.++.+.+=+=|+..+|++....+++.++-...+
T Consensus 1098 ~~e~~eg~r-------------------~~Lg~~~~~~Y~~QGLFHParkVR~~yw~vyn~my~~~~d 1146 (1172)
T KOG0213|consen 1098 FDEAMEGLR-------------------VALGPQAMLKYCLQGLFHPARKVRKRYWTVYNSMYHGSQD 1146 (1172)
T ss_pred HHHHHHHHH-------------------HHhchHHHHHHHHHhccCcHHHHHHHHHHHHHhHhhcccc
Confidence 666665442 2222222345556666788889999988888877665443
No 48
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.20 E-value=3.1e-08 Score=90.36 Aligned_cols=322 Identities=14% Similarity=0.151 Sum_probs=219.2
Q ss_pred CHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHH------hcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328 117 AVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVL------SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 117 ~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~------~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
.+..++.+++. ..++....++..+..+-..++.....+. ....-...+.++ ...+.-+.....+.++.++..
T Consensus 66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll-~r~d~~iv~~~~~Ils~la~~ 144 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLL-NRQDTFIVEMSFRILSKLACF 144 (442)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHH-hcCChHHHHHHHHHHHHHHHh
Confidence 35566666665 4566666667666666544432211111 112245677777 556677777788889888876
Q ss_pred CCCCChh-hhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC--CCcchHhHHHHH
Q 011328 190 KPQPLFE-QTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRT 265 (488)
Q Consensus 190 ~~~~~~~-~~~~~~~~l~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~ 265 (488)
....... ...-....+-..+.+ .+......+.+||..+...++.+ ..++..+++..++..+.+ .+-+++...+.|
T Consensus 145 g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR-~~~v~adg~~~l~~~l~s~~~~~QlQYqsifc 223 (442)
T KOG2759|consen 145 GNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYR-YAFVIADGVSLLIRILASTKCGFQLQYQSIFC 223 (442)
T ss_pred ccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchh-heeeecCcchhhHHHHhccCcchhHHHHHHHH
Confidence 6332222 223334455555655 57778888899999999887655 446666778888888732 456888999999
Q ss_pred HhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCH------HHHHHHHHcCChHHHHHHHhcC
Q 011328 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV------NQIQAIIEAGIIGPLVNLLLNA 339 (488)
Q Consensus 266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~------~~~~~l~~~~~l~~L~~ll~~~ 339 (488)
++.|+. ++...+.+...+.++.|..++++....+|-+-++.++.|+....+ +....++..++.+.+-.+-+.+
T Consensus 224 iWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rk 302 (442)
T KOG2759|consen 224 IWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERK 302 (442)
T ss_pred HHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcC
Confidence 999987 455556667779999999999888688899999999999998653 4455666777777666555544
Q ss_pred --ChhHHHHHHHHH-------HHhccCC----------------------CHHHHHHHHHC--CChHHHHhhcCCCC-HH
Q 011328 340 --EFEIKKEAAWAI-------SNATSGG----------------------SNEQIKFLVSQ--GCIKPLCDLLNCPD-PR 385 (488)
Q Consensus 340 --~~~v~~~a~~aL-------~~l~~~~----------------------~~~~~~~l~~~--~~i~~L~~ll~~~~-~~ 385 (488)
|+++....-..- ..+++.. =.+++..+.++ .++..|+.+|+.++ |.
T Consensus 303 ysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~ 382 (442)
T KOG2759|consen 303 YSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPI 382 (442)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCc
Confidence 554432222211 1222110 01334444444 35888888888655 77
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011328 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 453 (488)
Q Consensus 386 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~ 453 (488)
+...|+.-++.++..-+. .+..++..||-+.+.++++++|++|+..|...+.++..
T Consensus 383 iL~VAc~DIge~Vr~yP~------------gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 383 ILCVACHDIGEYVRHYPE------------GKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred eeehhhhhHHHHHHhCch------------HhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 778888888888887765 37889999999999999999999999999998877643
No 49
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=1.5e-07 Score=91.97 Aligned_cols=326 Identities=14% Similarity=0.184 Sum_probs=240.8
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCc--
Q 011328 73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSP-- 148 (488)
Q Consensus 73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~--~~~~v~~~a~~~L~~l~~~~~-- 148 (488)
..++.|+.-..+..-.+-|..|++.|..++. ++|..+...| +++|+..|+. .++++...++.++.++..+.+
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 4678888888777667889999999999987 7777777666 8999999987 689999999999999986542
Q ss_pred ----h----------hHHH-HHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCCh---hhhhchHHHHHHhhc
Q 011328 149 ----K----------CRDL-VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF---EQTRPALPALERLIH 210 (488)
Q Consensus 149 ----~----------~~~~-~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~---~~~~~~~~~l~~ll~ 210 (488)
. +.+. +...+.+.-++..+ ...|-.||..++..+.++....+.... +....++..++.+|+
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 1 1111 33345677777777 777889999999999999887744322 233678999999999
Q ss_pred cCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC----CcchHhHHHHHHhHhhcCCchhhHHHhhCCCh
Q 011328 211 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP----SPSVLIPALRTVGNIVTGDDMQTQCIINHQAL 286 (488)
Q Consensus 211 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 286 (488)
+....+|-.++..|..++..++...+.+.-.+++..|+.++..+ ..-|...|+..+.|+...+......+.+.+.+
T Consensus 177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i 256 (970)
T KOG0946|consen 177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI 256 (970)
T ss_pred hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence 99999999999999999998887666666668999999999763 23578889999999999888888888899999
Q ss_pred HHHHHHhcccc--h--------hhH--HHHHHHHHHHHhc-CCH-----HHHHHHHHcCChHHHHHHHhcC--ChhHHHH
Q 011328 287 PCLLDLLTQNY--K--------KSI--KKEACWTISNITA-GNV-----NQIQAIIEAGIIGPLVNLLLNA--EFEIKKE 346 (488)
Q Consensus 287 ~~L~~lL~~~~--~--------~~v--~~~a~~~L~nl~~-~~~-----~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~ 346 (488)
+.|.++|.... + .++ ...++.++..+.. +++ .+.+.+..++++..|+.++.++ ..+++..
T Consensus 257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlte 336 (970)
T KOG0946|consen 257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTE 336 (970)
T ss_pred HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHH
Confidence 99998874321 1 111 1356666666665 222 2224566789999999999887 5678999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHCC----------ChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhhhhh
Q 011328 347 AAWAISNATSGGSNEQIKFLVSQG----------CIKPLCDLLNC-PDPRIVTVCLEGLENILKAGEAE 404 (488)
Q Consensus 347 a~~aL~~l~~~~~~~~~~~l~~~~----------~i~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~ 404 (488)
+..+++++.++.. ..-..+.... ++-.++.+..+ .....|..++.++..++..+...
T Consensus 337 siitvAevVRgn~-~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~g 404 (970)
T KOG0946|consen 337 SIITVAEVVRGNA-RNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDG 404 (970)
T ss_pred HHHHHHHHHHhch-HHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhh
Confidence 9999999988653 2333333211 12233344443 34578888889988887666544
No 50
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.15 E-value=3.9e-09 Score=96.09 Aligned_cols=280 Identities=14% Similarity=0.100 Sum_probs=203.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHH
Q 011328 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 111 (488)
Q Consensus 32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 111 (488)
.+..+..|...+.-+...+.+.+..+++.. +.........=....|...++++.+++....|++||..+.. -++.|..
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~ 193 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFG-NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYA 193 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccchhhe
Confidence 667888898899888888999999988765 22221111111233445556664447888889999999998 8999999
Q ss_pred HHhCCCHHHHHHhh-CC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328 112 VIDHGAVPIFVRLL-SS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 112 ~~~~g~i~~L~~~L-~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
++..+++..++..+ ++ .+..++-..+.+++.|+.+++. .+.+...+.++.|...+..+..+.|.+-++.++.|++..
T Consensus 194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~-ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHA-AEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHH-HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99988899999988 33 6789999999999999877664 466677889999999998888999999999999999987
Q ss_pred CCCCChh------hhhchHHHHHHhhcc---CChhHHHHHHHHHHH-------hcc---------------CCchh----
Q 011328 190 KPQPLFE------QTRPALPALERLIHS---NDDEVLTDACWALSY-------LSD---------------GTNDK---- 234 (488)
Q Consensus 190 ~~~~~~~------~~~~~~~~l~~ll~~---~~~~v~~~al~~L~~-------l~~---------------~~~~~---- 234 (488)
.+..... ....-++..++.|.. .|+++....-..-.. +++ ++...
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F 352 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF 352 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence 6422221 123334444455542 244443332222111 111 11111
Q ss_pred ----HHHHHHh--CCHHHHHHhcCCC-CcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHH
Q 011328 235 ----IQAVIEA--GVCPRLVELLRHP-SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACW 307 (488)
Q Consensus 235 ----~~~~~~~--~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~ 307 (488)
...+-+. .++..|+.+|+.+ +|.+..-|+.=++...++.|.....+.+.|+-+.+++++.++ +++||.+|+.
T Consensus 353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALl 431 (442)
T KOG2759|consen 353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALL 431 (442)
T ss_pred HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHH
Confidence 1112221 4788899999775 588888999999999999999998889999999999999999 9999999999
Q ss_pred HHHHHhcC
Q 011328 308 TISNITAG 315 (488)
Q Consensus 308 ~L~nl~~~ 315 (488)
++..+..+
T Consensus 432 avQ~lm~~ 439 (442)
T KOG2759|consen 432 AVQKLMVH 439 (442)
T ss_pred HHHHHHhh
Confidence 98877653
No 51
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=5.2e-08 Score=95.51 Aligned_cols=370 Identities=16% Similarity=0.207 Sum_probs=197.6
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011328 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
..|.+.++|+..++-++..|+-+...+..+. ++... .+++...++|.+.+ .-|...++..+..++..+++...
T Consensus 143 lapeVe~Ll~~~~~~irKKA~Lca~r~irK~-P~l~e-----~f~~~~~~lL~ek~-hGVL~~~l~l~~e~c~~~~~~l~ 215 (866)
T KOG1062|consen 143 LAPEVERLLQHRDPYIRKKAALCAVRFIRKV-PDLVE-----HFVIAFRKLLCEKH-HGVLIAGLHLITELCKISPDALS 215 (866)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-chHHH-----HhhHHHHHHHhhcC-CceeeeHHHHHHHHHhcCHHHHH
Confidence 3444555555555555555555555555443 22221 23444455555555 45555555555555554444444
Q ss_pred HHHhCCCHHHHHHhhCC---------------CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccc--ccH
Q 011328 111 VVIDHGAVPIFVRLLSS---------------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH--AKL 173 (488)
Q Consensus 111 ~~~~~g~i~~L~~~L~~---------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~ 173 (488)
.+.+ .++.|+..|+. .+|-++-..++.|.-+-.+++...+.+-+ ++..+..--..+ --.
T Consensus 216 ~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D--iLaqvatntdsskN~Gn 291 (866)
T KOG1062|consen 216 YFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND--ILAQVATNTDSSKNAGN 291 (866)
T ss_pred HHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH--HHHHHHhcccccccchh
Confidence 3332 33333333321 34556666666666665555443333221 111111111000 011
Q ss_pred hHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC
Q 011328 174 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 253 (488)
Q Consensus 174 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 253 (488)
.+...++.++..+-.+. ....-++..+-++|.+.|..++.-++..|..+...++...+. .=..++++|++
T Consensus 292 AILYE~V~TI~~I~~~~-----~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqr-----Hr~tIleCL~D 361 (866)
T KOG1062|consen 292 AILYECVRTIMDIRSNS-----GLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQR-----HRSTILECLKD 361 (866)
T ss_pred HHHHHHHHHHHhccCCc-----hHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHH-----HHHHHHHHhcC
Confidence 23334444444332221 122335566667777777777777777777777666544332 22568889999
Q ss_pred CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHH---------
Q 011328 254 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAI--------- 323 (488)
Q Consensus 254 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l--------- 323 (488)
++..+++.|+..+..+.. +.+.+. .+..|+..|.+. +++.|...+..+..++.. .|+.+..+
T Consensus 362 pD~SIkrralELs~~lvn--~~Nv~~-----mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~ 433 (866)
T KOG1062|consen 362 PDVSIKRRALELSYALVN--ESNVRV-----MVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKT 433 (866)
T ss_pred CcHHHHHHHHHHHHHHhc--cccHHH-----HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHh
Confidence 999999999998888875 334443 345688888887 888888888888877762 23322221
Q ss_pred ----HHcCChHHHHHHHhcC-------------------------ChhHHHHHHHHHHHhc----cCCCHHHHHHHHHCC
Q 011328 324 ----IEAGIIGPLVNLLLNA-------------------------EFEIKKEAAWAISNAT----SGGSNEQIKFLVSQG 370 (488)
Q Consensus 324 ----~~~~~l~~L~~ll~~~-------------------------~~~v~~~a~~aL~~l~----~~~~~~~~~~l~~~~ 370 (488)
+...++..+++++.+. .+.+.+.|.|+|+.-. .+...+.-...-+..
T Consensus 434 aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesd 513 (866)
T KOG1062|consen 434 AGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESD 513 (866)
T ss_pred cccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHH
Confidence 1233566666666554 1233455666665432 111111111222345
Q ss_pred ChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHH
Q 011328 371 CIKPLCDLLNC--PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 446 (488)
Q Consensus 371 ~i~~L~~ll~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~ 446 (488)
++..|.+++.. .+..++..++.++.++....... .+.+ -+.+..+-.+-+.+++++|..
T Consensus 514 ivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~------------~~ri-----~~lI~~~~~s~~~elQQRa~E 574 (866)
T KOG1062|consen 514 IVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS------------SERI-----KQLISSYKSSLDTELQQRAVE 574 (866)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc------------HHHH-----HHHHHHhcccccHHHHHHHHH
Confidence 67777777663 45778888888888886554421 1111 123445556677888877665
No 52
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.8e-08 Score=90.66 Aligned_cols=189 Identities=20% Similarity=0.227 Sum_probs=158.6
Q ss_pred CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHH
Q 011328 212 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD 291 (488)
Q Consensus 212 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ 291 (488)
.+.+-+..++.-|..++.+-+. ...++..|++..++..+++.+..+|..|+++|+..+..++.....+++.++++.|+.
T Consensus 95 ~~le~ke~ald~Le~lve~iDn-Andl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDN-ANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhh-HHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 3566778888888888876654 456888899999999999999999999999999999999999999999999999999
Q ss_pred HhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCCHHHHHHHHHC
Q 011328 292 LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVSQ 369 (488)
Q Consensus 292 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~ 369 (488)
++.+..+..+|..|+++++.+.++++.....+...+....|...++++ +..++..++..+..++.... .....+...
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~-s~~d~~~~~ 252 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK-SDEDIASSL 252 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh-hhhhHHHHh
Confidence 999876788999999999999998888888888888899999999994 67788999999999987542 333355556
Q ss_pred CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011328 370 GCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 370 ~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 402 (488)
+....+..+....+.++.+.++.++..++....
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 777788888888888888888888777665433
No 53
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=3.9e-09 Score=94.84 Aligned_cols=184 Identities=18% Similarity=0.212 Sum_probs=153.5
Q ss_pred ChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHH
Q 011328 87 FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ 166 (488)
Q Consensus 87 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 166 (488)
+.+-++.|+.-|..++. +-++...+...|++..++.++++.+..+|+.|+++++..+.++|..+..+++.++++.|+..
T Consensus 96 ~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 37889999999999998 78889999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccHhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcc--CChhHHHHHHHHHHHhccCCchhHHHHHHhCC
Q 011328 167 FNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 243 (488)
Q Consensus 167 l~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~ 243 (488)
+..+.+..++..|+.+++.+.++. +........++...|...+.+ .+...+..++..+..+..........+...+.
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 977777888999999999999988 444444455679999999998 56788889999999998765544443444455
Q ss_pred HHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011328 244 CPRLVELLRHPSPSVLIPALRTVGNIVT 271 (488)
Q Consensus 244 l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 271 (488)
...+..+....+.++.+.++.++..+..
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 5556666666777888888877766654
No 54
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.11 E-value=2e-09 Score=100.30 Aligned_cols=226 Identities=18% Similarity=0.266 Sum_probs=159.9
Q ss_pred HHHHHHhhC--CCCHHHHHHHHHHHhhhhCCCchhHHHHHh------cCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328 118 VPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLS------NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 118 i~~L~~~L~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
...++.+|+ +.++++....+..+..+..+.+...+.+.. .....++++++ ..+|..+...++..+..+...
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHc
Confidence 444555554 368999999999999999888876666554 22578888877 667999999999999999988
Q ss_pred CCCCChhhhhchHHHHHHhhcc----CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc-----CC--CCcch
Q 011328 190 KPQPLFEQTRPALPALERLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-----RH--PSPSV 258 (488)
Q Consensus 190 ~~~~~~~~~~~~~~~l~~ll~~----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-----~~--~~~~v 258 (488)
.+........+.++.++..+.+ ++.+++..++.++.++..... ....+.+.++++.+.+++ .+ ...++
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~-~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE-YRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH-HHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch-hHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 7655555445667777777664 456778999999999987654 557788889999999999 22 34678
Q ss_pred HhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCH-HHHHHHHHcCChHHHHHHHh
Q 011328 259 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV-NQIQAIIEAGIIGPLVNLLL 337 (488)
Q Consensus 259 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~~~l~~L~~ll~ 337 (488)
+..++.+++.++. ++.....+.+.++++.+.++++....+++-+-++.++.|+..... .....++..|+++.+-.+..
T Consensus 215 ~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 8899999999987 555667777788999999999887788999999999999998544 37777888777776666555
Q ss_pred cC--ChhHHHH
Q 011328 338 NA--EFEIKKE 346 (488)
Q Consensus 338 ~~--~~~v~~~ 346 (488)
.+ |+++...
T Consensus 294 rk~~Dedl~ed 304 (312)
T PF03224_consen 294 RKWSDEDLTED 304 (312)
T ss_dssp S--SSHHHHHH
T ss_pred CCCCCHHHHHH
Confidence 44 7776544
No 55
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.09 E-value=4e-09 Score=99.98 Aligned_cols=401 Identities=13% Similarity=0.110 Sum_probs=236.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHH
Q 011328 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 111 (488)
Q Consensus 32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 111 (488)
+..+++.++.+.+..+..++.....+.+.-.....++-.++..+..++..++..+. .+. -.+.+++.+.. +-+.|-.
T Consensus 523 ~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~-t~~-~il~~f~tv~v-sl~~r~k 599 (975)
T COG5181 523 SRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDT-TVG-LILPCFSTVLV-SLEFRGK 599 (975)
T ss_pred HHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccc-ccc-EEEecccceee-ehhhccC
Confidence 44455555555555666666655555443322223333334445555555554441 111 11122222222 1222222
Q ss_pred HHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchh--HHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328 112 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC--RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 112 ~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
-.-.-++..++..|+++.+.+|..|+...+.++..-..| .+.+...|. .|.+.+ ....+++.-..+.+++.+...
T Consensus 600 p~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv 676 (975)
T COG5181 600 PHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSV 676 (975)
T ss_pred cchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhh
Confidence 122235778888999999999999999998886322111 122222222 345555 667888888888888887655
Q ss_pred CCCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011328 190 KPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268 (488)
Q Consensus 190 ~~~~-~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 268 (488)
.... -..-..+++|.+..+|++...++....+..++.++...++....---..+.--|++.|.+-+.++|+.|..+++.
T Consensus 677 ~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~ 756 (975)
T COG5181 677 HRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGC 756 (975)
T ss_pred hcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhh
Confidence 4222 222457899999999999999999999999999998777543321112334456777888888999999999999
Q ss_pred hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHH
Q 011328 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA 348 (488)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 348 (488)
++..-. ...++..|++-|+.. +...|.-...+++-.+..+. -..++|.|+.=...++..|+.-.+
T Consensus 757 Is~aiG-------PqdvL~~LlnnLkvq-eRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TPe~nVQnGvL 821 (975)
T COG5181 757 ISRAIG-------PQDVLDILLNNLKVQ-ERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETPEANVQNGVL 821 (975)
T ss_pred HHhhcC-------HHHHHHHHHhcchHH-HHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCchhHHHHhHH
Confidence 886322 224556666666655 44444444444444443111 123788888888888899999999
Q ss_pred HHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh------------------------h
Q 011328 349 WAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA------------------------E 404 (488)
Q Consensus 349 ~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~------------------------~ 404 (488)
.+++.+..........++.. ..+.|.+.+.+.|+.-+..+...+..+.-...- .
T Consensus 822 kam~fmFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhv 899 (975)
T COG5181 822 KAMCFMFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHV 899 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHH
Confidence 99999986554444444433 566677777777776666666666655322110 0
Q ss_pred hccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 011328 405 KNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEED 456 (488)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~ 456 (488)
... ..++...+...+...-.+..+++=+=|++..|+.+....++..+-.+.
T Consensus 900 i~~-~~Eg~e~~~~~lg~g~~m~Yv~qGLFHPs~~VRk~ywtvyn~myv~~~ 950 (975)
T COG5181 900 IQS-FDEGMESFATVLGSGAMMKYVQQGLFHPSSTVRKRYWTVYNIMYVFDS 950 (975)
T ss_pred HHH-HHHHHHHHHHHhccHHHHHHHHHhccCchHHHHHHHHHHHhhhhhccc
Confidence 000 000000111222211124555555678888898888888877765543
No 56
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=1.7e-07 Score=91.95 Aligned_cols=366 Identities=13% Similarity=0.123 Sum_probs=220.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011328 34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 113 (488)
Q Consensus 34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 113 (488)
.+.+.|++++.-++-.|+.+|.++.+.+ .. ..+.|.+.++|++.+ +.+|..|+.|...+....|+..+.+
T Consensus 111 slknDL~s~nq~vVglAL~alg~i~s~E---ma-----rdlapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~f- 180 (866)
T KOG1062|consen 111 SLKNDLNSSNQYVVGLALCALGNICSPE---MA-----RDLAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEHF- 180 (866)
T ss_pred HHHhhccCCCeeehHHHHHHhhccCCHH---Hh-----HHhhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHHh-
Confidence 3455556677777777777777765532 12 245677777888877 7888888888888777666655543
Q ss_pred hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc--------------cccHhHHHHH
Q 011328 114 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--------------HAKLSMLRNA 179 (488)
Q Consensus 114 ~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--------------~~~~~v~~~a 179 (488)
++...++|.+.+..+....+..+..+|..+++.-..+.+ .++.++..|++ -++|-++..+
T Consensus 181 ----~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~i 254 (866)
T KOG1062|consen 181 ----VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRI 254 (866)
T ss_pred ----hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHH
Confidence 466666777666667667777777777665543333332 44455555421 1356667777
Q ss_pred HHHHHHhhcCCCCCChhhhhchHHHHHHhhccC---ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCc
Q 011328 180 TWTLSNFCRGKPQPLFEQTRPALPALERLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP 256 (488)
Q Consensus 180 ~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 256 (488)
++.|.-+.++++. ....+..++..+..-..+. -..+...+..++..+-.+++-+ + -++..|-++|.+.+.
T Consensus 255 LrlLriLGq~d~d-aSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lr---v---lainiLgkFL~n~d~ 327 (866)
T KOG1062|consen 255 LRLLRILGQNDAD-ASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLR---V---LAINILGKFLLNRDN 327 (866)
T ss_pred HHHHHHhcCCCcc-HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHH---H---HHHHHHHHHhcCCcc
Confidence 7777766665421 1122222222222111111 1345555666665554433211 1 234556666777777
Q ss_pred chHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 011328 257 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 336 (488)
Q Consensus 257 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll 336 (488)
.+|.-|+..|.......+...+. --..+++.|+++ +..+|+.|+-.+..+... .++.. ++..|+.+|
T Consensus 328 NirYvaLn~L~r~V~~d~~avqr-----Hr~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~-----mv~eLl~fL 394 (866)
T KOG1062|consen 328 NIRYVALNMLLRVVQQDPTAVQR-----HRSTILECLKDP-DVSIKRRALELSYALVNE--SNVRV-----MVKELLEFL 394 (866)
T ss_pred ceeeeehhhHHhhhcCCcHHHHH-----HHHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHH
Confidence 77777777777777655544332 234688899999 999999999998888754 23332 456688899
Q ss_pred hcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh-hhhhccCCCCccch
Q 011328 337 LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG-EAEKNMGNTGGVNL 415 (488)
Q Consensus 337 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~-~~~~~~~~~~~~~~ 415 (488)
...+++++..++.-+..++..-.++.+-+ ++.+.+.++.....+...+...+..++..+ ...+.. .
T Consensus 395 ~~~d~~~k~~~as~I~~laEkfaP~k~W~------idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y-------~ 461 (866)
T KOG1062|consen 395 ESSDEDFKADIASKIAELAEKFAPDKRWH------IDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEY-------A 461 (866)
T ss_pred HhccHHHHHHHHHHHHHHHHhcCCcchhH------HHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhH-------H
Confidence 99899999999999999987766655444 667777777666666666665555665444 221110 0
Q ss_pred HHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011328 416 FAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 452 (488)
Q Consensus 416 ~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~ 452 (488)
+.+..... ....++.-+.+.+.+-|.|++..|=
T Consensus 462 ~~rLy~a~----~~~~~~~is~e~l~qVa~W~IGEYG 494 (866)
T KOG1062|consen 462 VLRLYLAL----SEDTLLDISQEPLLQVASWCIGEYG 494 (866)
T ss_pred HHHHHHHH----hhhhhhhhhhhhHHHHHHHHhhhhh
Confidence 11111100 0111233445566888999998775
No 57
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=7.7e-07 Score=87.25 Aligned_cols=323 Identities=18% Similarity=0.208 Sum_probs=238.2
Q ss_pred ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCC-CChhHHHHHHHHHHHhcCCCc-
Q 011328 30 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-DFPQLQFEAAWALTNIASGTS- 106 (488)
Q Consensus 30 ~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~~v~~~a~~~L~~l~~~~~- 106 (488)
+.|+.|+..+.+ .=.+=|..|++.|..+... .+..+-.-+++.|++.|+.+ .++++...++..+.++....+
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srk-----YR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK-----YREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHH-----HHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 678899999875 4467788999999997643 33444556788999999754 348899999999999887432
Q ss_pred -----h----------hhHHHH-hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC-chhHHHHHh-cCChHHHHHHhc
Q 011328 107 -----E----------NTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLS-NGALMPLLAQFN 168 (488)
Q Consensus 107 -----~----------~~~~~~-~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~-~~~l~~L~~ll~ 168 (488)
+ ..+.++ ..+.|..++.+++..+-.+|..++..+.++.... ++.++.+.. ..++..++.+|
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL- 175 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL- 175 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH-
Confidence 1 122333 5588999999999999999999999999987544 455665544 45799999999
Q ss_pred ccccHhHHHHHHHHHHHhhcCCCCCC-hhhhhchHHHHHHhhccC---C-hhHHHHHHHHHHHhccCCchhHHHHHHhCC
Q 011328 169 EHAKLSMLRNATWTLSNFCRGKPQPL-FEQTRPALPALERLIHSN---D-DEVLTDACWALSYLSDGTNDKIQAVIEAGV 243 (488)
Q Consensus 169 ~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~l~~ll~~~---~-~~v~~~al~~L~~l~~~~~~~~~~~~~~~~ 243 (488)
.++-+.+|..++..|..+.++.+... .....+++..|..++... | .-|...++..+.|+..++......+.+.+.
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~ 255 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY 255 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence 77788899999999999999885444 445588999999999853 3 468899999999999888777788888899
Q ss_pred HHHHHHhcCC---CC-----cch-----HhHHHHHHhHhhcCC-c-----hhhHHHhhCCChHHHHHHhccc-chhhHHH
Q 011328 244 CPRLVELLRH---PS-----PSV-----LIPALRTVGNIVTGD-D-----MQTQCIINHQALPCLLDLLTQN-YKKSIKK 303 (488)
Q Consensus 244 l~~L~~lL~~---~~-----~~v-----~~~a~~~L~~l~~~~-~-----~~~~~~~~~~~~~~L~~lL~~~-~~~~v~~ 303 (488)
++.|.++|.- .+ +.. ...++.++..+..-. . .+.+.+...+++..|..++-++ -..+++.
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt 335 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT 335 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence 9999988753 22 111 123555666655421 1 2234566888999999988776 4678999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcC----------ChHHHHHHHhcC-ChhHHHHHHHHHHHhccCC
Q 011328 304 EACWTISNITAGNVNQIQAIIEAG----------IIGPLVNLLLNA-EFEIKKEAAWAISNATSGG 358 (488)
Q Consensus 304 ~a~~~L~nl~~~~~~~~~~l~~~~----------~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~ 358 (488)
.+..++++..+++..+...+.+.. ++-.++.+..+. .+..|..+.+++..+....
T Consensus 336 esiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN 401 (970)
T KOG0946|consen 336 ESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN 401 (970)
T ss_pred HHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc
Confidence 999999999998887777776421 223344444444 5678888889988887654
No 58
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=6.7e-07 Score=90.07 Aligned_cols=331 Identities=16% Similarity=0.171 Sum_probs=229.9
Q ss_pred HHHHHHHHHHHHHhccCCCccH----HHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHH
Q 011328 45 NIQLDATTQFRKLLSIERSPPI----NEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPI 120 (488)
Q Consensus 45 ~~~~~a~~~L~~l~~~~~~~~~----~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 120 (488)
.-...++.+|.++++.. ++.. .+..--|.++.+..++.....+.++.-|+.++..+.. +.++...+++.|.+..
T Consensus 1740 ~~v~m~LtAL~Nli~~n-PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSAN-PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHHhhC-cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHH
Confidence 34567899999998875 4332 2223347888888888766548899999999988887 8899999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC---CCCChhh
Q 011328 121 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK---PQPLFEQ 197 (488)
Q Consensus 121 L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~ 197 (488)
|+.+|++ -|..|+.++.+|+.+++... ......+.|++..+..++..+++++.+..++..+..+..+. |...+..
T Consensus 1818 LL~lLHS-~PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL 1895 (2235)
T KOG1789|consen 1818 LLTLLHS-QPSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITL 1895 (2235)
T ss_pred HHHHHhc-ChHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeeh
Confidence 9999976 57889999999999987655 56667788999999999888889999999999999998876 3333333
Q ss_pred hhchHH-----------HHHHhhcc--CChh------HHHHHHHHHHHhcc--------CC------chh----------
Q 011328 198 TRPALP-----------ALERLIHS--NDDE------VLTDACWALSYLSD--------GT------NDK---------- 234 (488)
Q Consensus 198 ~~~~~~-----------~l~~ll~~--~~~~------v~~~al~~L~~l~~--------~~------~~~---------- 234 (488)
+.-.-. ..++.+.. ++++ .+...-..+..+.. ++ +++
T Consensus 1896 ~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E 1975 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKE 1975 (2235)
T ss_pred HHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccC
Confidence 222222 33333432 2222 12222222222221 00 000
Q ss_pred --------HHHH------------HHhCCHHHHHHhcCCCCcc--hHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHH
Q 011328 235 --------IQAV------------IEAGVCPRLVELLRHPSPS--VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL 292 (488)
Q Consensus 235 --------~~~~------------~~~~~l~~L~~lL~~~~~~--v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l 292 (488)
...+ +-.++++.+.+++..+.++ .-..-..++..+.+..+....++-..|.+|.++..
T Consensus 1976 ~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~A 2055 (2235)
T KOG1789|consen 1976 CAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTA 2055 (2235)
T ss_pred cccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHH
Confidence 0000 0113566666677654432 22333344555666677777777788999999999
Q ss_pred hcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCCh
Q 011328 293 LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCI 372 (488)
Q Consensus 293 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i 372 (488)
+... +..+-..|.++|..++.+ .-..+.+.....+..++..+... .....-|+.+|..+......+...+....|++
T Consensus 2056 m~~~-n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLv 2132 (2235)
T KOG1789|consen 2056 MCLQ-NTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLV 2132 (2235)
T ss_pred HHhc-CCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcH
Confidence 9877 667778999999999875 56666777666777777777664 34556899999999887666777777888999
Q ss_pred HHHHhhcCCC
Q 011328 373 KPLCDLLNCP 382 (488)
Q Consensus 373 ~~L~~ll~~~ 382 (488)
+.|..+|+..
T Consensus 2133 pyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2133 PYLLQLLDSS 2142 (2235)
T ss_pred HHHHHHhccc
Confidence 9999999853
No 59
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.04 E-value=9.9e-09 Score=95.67 Aligned_cols=227 Identities=14% Similarity=0.188 Sum_probs=162.9
Q ss_pred hHHHHHHhccc-ccHhHHHHHHHHHHHhhcCCCCCChhhh-------hchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011328 160 LMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFEQT-------RPALPALERLIHSNDDEVLTDACWALSYLSDGT 231 (488)
Q Consensus 160 l~~L~~ll~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~-------~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 231 (488)
...++.++... ++.++..+++..+..+....+....... ......+++++.++|..+...++..+..+....
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 45566666555 7888999999999999888764433322 125667778888999999999999999999776
Q ss_pred chhHHHHHHhCCHHHHHHhcCC----CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHh------cccchhhH
Q 011328 232 NDKIQAVIEAGVCPRLVELLRH----PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL------TQNYKKSI 301 (488)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL------~~~~~~~v 301 (488)
+....... .+.++.+++.+.+ ++.+++..++.++.++.. .+..+..+.+.++++.+.+++ .+.....+
T Consensus 137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 65544322 3556666666654 445677899999999987 666778888999999999999 45547889
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC
Q 011328 302 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 380 (488)
Q Consensus 302 ~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~ 380 (488)
+.+++.+++-++.. ++....+.+.++++.|.++++.. ..+|.+-++.++.|++..........++..|+++.+..+..
T Consensus 215 ~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 99999999999876 77888888888999999999876 77899999999999998876558888888888888877766
Q ss_pred --CCCHHHHHH
Q 011328 381 --CPDPRIVTV 389 (488)
Q Consensus 381 --~~~~~v~~~ 389 (488)
.+|+++.+.
T Consensus 294 rk~~Dedl~ed 304 (312)
T PF03224_consen 294 RKWSDEDLTED 304 (312)
T ss_dssp S--SSHHHHHH
T ss_pred CCCCCHHHHHH
Confidence 367777654
No 60
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=2e-07 Score=90.30 Aligned_cols=220 Identities=15% Similarity=0.172 Sum_probs=159.4
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
+.-+.++.+|.+.-+-+|..|+..+.++.-.- ++..+ ..+|.|++-|.++| +.|+-.|+.+++.++..+|.+.
T Consensus 144 DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 144 DLADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCccc
Confidence 44557888899999999999999888876443 22222 46899999999999 9999999999999999777765
Q ss_pred HHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328 110 RVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 188 (488)
-.+ -|.+.++|.. .+.=+.-..+..+++|+--.|...+. .++++.+++....-.++...++.++.....
T Consensus 217 L~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~ 286 (877)
T KOG1059|consen 217 LQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSM 286 (877)
T ss_pred ccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehh
Confidence 433 4778887765 33334445677888888766654443 577889888444444555555555543322
Q ss_pred CCC-CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011328 189 GKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 267 (488)
Q Consensus 189 ~~~-~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~ 267 (488)
... ........-++..|-.++.+.|+.++.-.+.+++.+....+...+ ..-+.++++|.+.++.+|..|+..+.
T Consensus 287 s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq-----a~kdlIlrcL~DkD~SIRlrALdLl~ 361 (877)
T KOG1059|consen 287 SSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ-----AHKDLILRCLDDKDESIRLRALDLLY 361 (877)
T ss_pred ccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH-----HhHHHHHHHhccCCchhHHHHHHHHH
Confidence 221 133344456777888888899999999999999999977665444 33477899999999999999999998
Q ss_pred Hhhc
Q 011328 268 NIVT 271 (488)
Q Consensus 268 ~l~~ 271 (488)
.+..
T Consensus 362 gmVs 365 (877)
T KOG1059|consen 362 GMVS 365 (877)
T ss_pred HHhh
Confidence 8875
No 61
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=5.1e-08 Score=95.56 Aligned_cols=382 Identities=16% Similarity=0.188 Sum_probs=257.2
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
+.+|.+++++...|-+.+...--.+.+.+... ++ ...+++..+++=..+++ +.+|..|++.++.+-. +...
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~-P~-----~a~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v--~~i~ 119 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGK-PD-----LAILAVNTFLKDCEDPN-PLIRALALRTMGCLRV--DKIT 119 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhccC-ch-----HHHhhhhhhhccCCCCC-HHHHHHHhhceeeEee--hHHH
Confidence 45677888888888777777777777766654 11 12356777777778888 8999998888877754 2222
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
. .+...+.+.+++.++.+|..+..+..++-..++ +.....|.+..|-.++ .++++.|..+|+.+|..+...
T Consensus 120 e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 120 E-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHES 190 (734)
T ss_pred H-----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHh
Confidence 2 246888999999999999999999999876654 4667778888888888 688999999999999999987
Q ss_pred CCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011328 190 KPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268 (488)
Q Consensus 190 ~~~-~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 268 (488)
.+. .........+..++..+..-+..-+...+.++.+-...++.... .++..+...+.+.++.+...+...+.+
T Consensus 191 ~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~ 265 (734)
T KOG1061|consen 191 HPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQ 265 (734)
T ss_pred CCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHH
Confidence 753 34444456667777777666666777777777766655442223 456778888888888888888888888
Q ss_pred hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHH-------------------------
Q 011328 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI------------------------- 323 (488)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l------------------------- 323 (488)
+........ ..+-..+-+.++.++.++ . +++..++.-+.-+....++....-
T Consensus 266 ~~~~~~~~~-~~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~l 342 (734)
T KOG1061|consen 266 LVKYLKQVN-ELLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIEL 342 (734)
T ss_pred HHHHHHHHH-HHHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHH
Confidence 776544422 222335666677777666 3 555555554444443333321110
Q ss_pred HH-c---CChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 011328 324 IE-A---GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 399 (488)
Q Consensus 324 ~~-~---~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~ 399 (488)
.. . .++..+...-..-|.+...++.+|+++++...... .+++..|.++++.....+...+...++.++.
T Consensus 343 a~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-------~~cv~~lLell~~~~~yvvqE~~vvi~dilR 415 (734)
T KOG1061|consen 343 ANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-------NDCVSILLELLETKVDYVVQEAIVVIRDILR 415 (734)
T ss_pred hhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-------hhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence 00 0 12233333333447788899999999998754221 5789999999998888888888888888888
Q ss_pred hhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCC
Q 011328 400 AGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEP 460 (488)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~ 460 (488)
..+.. +....... -..+-+-++|+.+....|++.+|-+.-++-++
T Consensus 416 kyP~~-----------~~~vv~~l-----~~~~~sl~epeak~amiWilg~y~~~i~~a~e 460 (734)
T KOG1061|consen 416 KYPNK-----------YESVVAIL-----CENLDSLQEPEAKAALIWILGEYAERIENALE 460 (734)
T ss_pred cCCCc-----------hhhhhhhh-----cccccccCChHHHHHHHHHHhhhhhccCcHHH
Confidence 76643 22222111 11223335778888888888888776666444
No 62
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=9.1e-08 Score=93.87 Aligned_cols=300 Identities=19% Similarity=0.175 Sum_probs=189.1
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
+.++.+++...++++.+|..|++.+..+--. .+. .-....+.+.+++.+ +.+|..++.+..++-..+ .
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l~v~-------~i~-ey~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~~---~ 153 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCLRVD-------KIT-EYLCDPLLKCLKDDD-PYVRKTAAVCVAKLFDID---P 153 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeEeeh-------HHH-HHHHHHHHHhccCCC-hhHHHHHHHHHHHhhcCC---h
Confidence 7788888888999999998888877664221 111 235678889999999 999999999999887644 3
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
+.....|+++.|..++.+.++.+..+|+.+|..+...++...........+..++..+... .-..-+..|-.++.+
T Consensus 154 ~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec----~EW~qi~IL~~l~~y 229 (734)
T KOG1061|consen 154 DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNEC----TEWGQIFILDCLAEY 229 (734)
T ss_pred hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHh----hhhhHHHHHHHHHhc
Confidence 4566789999999999999999999999999999876653111222222344444444222 222233444555555
Q ss_pred CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011328 190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 269 (488)
Q Consensus 190 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l 269 (488)
.+... .....++..+...+.+.+..+...+...+.++...-..... ..-...-+.++.++..+. +++..++.-+.-+
T Consensus 230 ~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~-~~~~K~~~pl~tlls~~~-e~qyvaLrNi~li 306 (734)
T KOG1061|consen 230 VPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNE-LLFKKVAPPLVTLLSSES-EIQYVALRNINLI 306 (734)
T ss_pred CCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHH-HHHHHhcccceeeecccc-hhhHHHHhhHHHH
Confidence 44444 45567778888888888888888888888887765544222 333356677777777765 6666666666555
Q ss_pred hcCCchhhHHHh--------------------------hCCChHHHHHHh---cccchhhHHHHHHHHHHHHhcCCHHHH
Q 011328 270 VTGDDMQTQCII--------------------------NHQALPCLLDLL---TQNYKKSIKKEACWTISNITAGNVNQI 320 (488)
Q Consensus 270 ~~~~~~~~~~~~--------------------------~~~~~~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~~~~~ 320 (488)
....+.....-+ +..+-+.+-++. ... +.+..+++.+++++++..-.+.
T Consensus 307 l~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatev-D~~fvrkaIraig~~aik~e~~- 384 (734)
T KOG1061|consen 307 LQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEV-DVDFVRKAVRAIGRLAIKAEQS- 384 (734)
T ss_pred HHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhh-CHHHHHHHHHHhhhhhhhhhhh-
Confidence 544332111100 111111111111 222 5667789999999998742221
Q ss_pred HHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011328 321 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 355 (488)
Q Consensus 321 ~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~ 355 (488)
+++++.|+.++..+-..+..++...+..+.
T Consensus 385 -----~~cv~~lLell~~~~~yvvqE~~vvi~dil 414 (734)
T KOG1061|consen 385 -----NDCVSILLELLETKVDYVVQEAIVVIRDIL 414 (734)
T ss_pred -----hhhHHHHHHHHhhcccceeeehhHHHHhhh
Confidence 345666666666443334444444444444
No 63
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.97 E-value=1.2e-07 Score=89.38 Aligned_cols=353 Identities=13% Similarity=0.053 Sum_probs=215.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011328 34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 113 (488)
Q Consensus 34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 113 (488)
..+..|+|..|..-..|+..+..++..+ -++. ...|.+..++....++.....+..++.++++++... .....+-
T Consensus 98 ~al~aL~s~epr~~~~Aaql~aaIA~~E-lp~~---~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~-~Pe~li~ 172 (858)
T COG5215 98 MALRALKSPEPRFCTMAAQLLAAIARME-LPNS---LWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESE-APEDLIQ 172 (858)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHhh-Cccc---cchHHHHHHHHhccccCchHhHHHHHHHHHHHhhcc-CHHHHHH
Confidence 4678889999999999999999988765 1211 123555666666666654678999999999999832 2222222
Q ss_pred -hCCCHHHHHH-hhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChH-HHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328 114 -DHGAVPIFVR-LLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM-PLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 114 -~~g~i~~L~~-~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~-~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
.+.++-.++. .+++ ++..+|-.++.+|.+-+..-.+.-..-.+.+.+. ...+.- +.++.+++..+..||..+..-
T Consensus 173 ~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceat-q~~d~e~q~aafgCl~kim~L 251 (858)
T COG5215 173 MSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEAT-QGNDEELQHAAFGCLNKIMML 251 (858)
T ss_pred HhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhc-cCCcHHHHHHHHHHHHHHHHH
Confidence 2233333433 4444 6788999999999883321111111111222222 222222 678899999999999987654
Q ss_pred C-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHH-------------HH---HhCCHHHHHHhcC
Q 011328 190 K-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA-------------VI---EAGVCPRLVELLR 252 (488)
Q Consensus 190 ~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~-------------~~---~~~~l~~L~~lL~ 252 (488)
. .........-........++++++++...+...-+.++...-+..-. +. -.+++|.|+++|.
T Consensus 252 yY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~ 331 (858)
T COG5215 252 YYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLE 331 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHH
Confidence 3 11122222334445556778999999999998887777532211000 11 1257888999985
Q ss_pred C-------CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011328 253 H-------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 325 (488)
Q Consensus 253 ~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 325 (488)
. .++.+...|..||.-++.... ..+++ .++..+-.-++++ ++.-|..|+.+++.+..+..+....-+-
T Consensus 332 ~q~ed~~~DdWn~smaA~sCLqlfaq~~g---d~i~~-pVl~FvEqni~~~-~w~nreaavmAfGSvm~gp~~~~lT~~V 406 (858)
T COG5215 332 KQGEDYYGDDWNPSMAASSCLQLFAQLKG---DKIMR-PVLGFVEQNIRSE-SWANREAAVMAFGSVMHGPCEDCLTKIV 406 (858)
T ss_pred hcCCCccccccchhhhHHHHHHHHHHHhh---hHhHH-HHHHHHHHhccCc-hhhhHHHHHHHhhhhhcCccHHHHHhhH
Confidence 5 235567777777766654222 12222 2555555666777 8999999999999998864444443344
Q ss_pred cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHh-hcC--CCCHHHHHHHHHHHHHHHHhh
Q 011328 326 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD-LLN--CPDPRIVTVCLEGLENILKAG 401 (488)
Q Consensus 326 ~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~-ll~--~~~~~v~~~al~~L~~l~~~~ 401 (488)
...+|.+...+.++..-++..++|+++.++..- ...+...+-+...+. ++- .+.+.+..++.+...++...-
T Consensus 407 ~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v----a~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~ 481 (858)
T COG5215 407 PQALPGIENEMSDSCLWVKSTTAWCFGAIADHV----AMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHI 481 (858)
T ss_pred HhhhHHHHHhcccceeehhhHHHHHHHHHHHHH----HHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhh
Confidence 468999999888888889999999999998532 111111222222222 111 235566667777777776543
No 64
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.96 E-value=2.8e-07 Score=91.91 Aligned_cols=352 Identities=14% Similarity=0.125 Sum_probs=226.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011328 34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 113 (488)
Q Consensus 34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 113 (488)
.|++.+.+.|-+.|+.|+.-|.+=+.+. .-..+.=-+..++..++++|.+.+ .++|..|.+|++-+++.-++.+-.-
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le~- 85 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLET- 85 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHHH-
Confidence 6889999999999999999888777654 222222234468899999999999 9999999999999987444443322
Q ss_pred hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHH----HHHhcc-cccHhHHHHHHHHHHHhhc
Q 011328 114 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL----LAQFNE-HAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 114 ~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L----~~ll~~-~~~~~v~~~a~~~L~~l~~ 188 (488)
.++.|..-+-++....|..+.-.|.....+-+..........+.+.+ ...+.. .....++..++..+.-+..
T Consensus 86 ---~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 86 ---IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred ---HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 24556655445555555555444444332222122222222333333 333322 2333477777777766554
Q ss_pred CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHHHh
Q 011328 189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVG 267 (488)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~ 267 (488)
.....-...-.+++..++.-+.++...++..++.+|+.++...+.. .. .+++..|.+-|.. ..+...+.-+.+|+
T Consensus 163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---ly-~~li~~Ll~~L~~~~q~~~~rt~Iq~l~ 238 (1233)
T KOG1824|consen 163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---LY-VELIEHLLKGLSNRTQMSATRTYIQCLA 238 (1233)
T ss_pred hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 4322222244566777777778888999999999999999654321 11 2556667776655 34555566677888
Q ss_pred HhhcCCchhhHHHhhCCChHHHHHHh---cccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-----
Q 011328 268 NIVTGDDMQTQCIINHQALPCLLDLL---TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA----- 339 (488)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~~~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~----- 339 (488)
.+++........- -..+++.+.+.. +.. +.++|+.++.++..+....+..+-..+. .++..+++.+..+
T Consensus 239 ~i~r~ag~r~~~h-~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~y 315 (1233)
T KOG1824|consen 239 AICRQAGHRFGSH-LDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVP-EIINLCLSYISYDPNYNY 315 (1233)
T ss_pred HHHHHhcchhhcc-cchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccch-HHHHHHHHHhccCCCCCC
Confidence 8877443222211 225677777777 555 7899999999999988866665443332 1344444444210
Q ss_pred -----------------------------ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHH
Q 011328 340 -----------------------------EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVC 390 (488)
Q Consensus 340 -----------------------------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 390 (488)
++.||++|+.++..+.... .+....+.+ .+-+.++.-+++.++.++..+
T Consensus 316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR-~E~L~~~~q-~l~p~lI~RfkEREEnVk~dv 393 (1233)
T KOG1824|consen 316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSR-LEMLPDFYQ-TLGPALISRFKEREENVKADV 393 (1233)
T ss_pred CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhcc-HHHHHHHHH-HhCHHHHHHHHHHhhhHHHHH
Confidence 2579999999999998754 455555544 567788888888888888888
Q ss_pred HHHHHHHHHh
Q 011328 391 LEGLENILKA 400 (488)
Q Consensus 391 l~~L~~l~~~ 400 (488)
..++..++..
T Consensus 394 f~~yi~ll~q 403 (1233)
T KOG1824|consen 394 FHAYIALLKQ 403 (1233)
T ss_pred HHHHHHHHHc
Confidence 8887777653
No 65
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.94 E-value=2.4e-07 Score=87.47 Aligned_cols=361 Identities=12% Similarity=0.077 Sum_probs=222.5
Q ss_pred hccHHHHHHHh----cCCC-HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011328 29 LESLPAMVAGV----WSDD-RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 103 (488)
Q Consensus 29 ~~~i~~l~~~L----~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~ 103 (488)
.+..|-+++.+ ..+. ...+..++.++..++.+..++.....-+.-++.....-++.+.+..+|..|+.+|.+-+.
T Consensus 128 ~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~ 207 (858)
T COG5215 128 NSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM 207 (858)
T ss_pred cccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH
Confidence 35556555555 3443 467888999999988766432222222222333334455665557899999999887332
Q ss_pred ------CCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHH
Q 011328 104 ------GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR 177 (488)
Q Consensus 104 ------~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~ 177 (488)
..++.|+. ++...+..-+.++.+++..+..+|..+..-.-.+-+..++.-......+.+ ++++.++..
T Consensus 208 fv~~nf~~E~erNy-----~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m-ks~nd~va~ 281 (858)
T COG5215 208 FVQGNFCYEEERNY-----FMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM-KSQNDEVAI 281 (858)
T ss_pred HHHHhhcchhhhch-----hheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchHHHH
Confidence 01223332 345555666779999999999999998754433333444432333333444 778888988
Q ss_pred HHHHHHHHhhcCCCCCC-----------------hhhhhchHHHHHHhhcc-------CChhHHHHHHHHHHHhccCCch
Q 011328 178 NATWTLSNFCRGKPQPL-----------------FEQTRPALPALERLIHS-------NDDEVLTDACWALSYLSDGTND 233 (488)
Q Consensus 178 ~a~~~L~~l~~~~~~~~-----------------~~~~~~~~~~l~~ll~~-------~~~~v~~~al~~L~~l~~~~~~ 233 (488)
.++..-+.+|....... ......++|.++.+|.. +++.+-..|..||.-.+....+
T Consensus 282 qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd 361 (858)
T COG5215 282 QAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD 361 (858)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh
Confidence 89888877776431100 01135688999999974 2466777777777776654432
Q ss_pred hHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHh
Q 011328 234 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 313 (488)
Q Consensus 234 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~ 313 (488)
.+++ .++..+-+-++++++.-|+.+..+++.+..+.......-+-...+|.+...+.++ .-.++..++|+++.++
T Consensus 362 ---~i~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~ia 436 (858)
T COG5215 362 ---KIMR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIA 436 (858)
T ss_pred ---HhHH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHH
Confidence 2444 3556666678888999999999999999987665544444557888888888877 8889999999999998
Q ss_pred cCCHHHHHHHHHcCChHHHHHHHhc---CChhHHHHHHHHHHHhccCCCHHH--HHHHHHCCChHHHHhhcC-----CCC
Q 011328 314 AGNVNQIQAIIEAGIIGPLVNLLLN---AEFEIKKEAAWAISNATSGGSNEQ--IKFLVSQGCIKPLCDLLN-----CPD 383 (488)
Q Consensus 314 ~~~~~~~~~l~~~~~l~~L~~ll~~---~~~~v~~~a~~aL~~l~~~~~~~~--~~~l~~~~~i~~L~~ll~-----~~~ 383 (488)
.+-+..+. ..|-++..++.... +.+.+..++.|...|++.+-.+.. ...+..+-....+-.+++ ..+
T Consensus 437 d~va~~i~---p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne 513 (858)
T COG5215 437 DHVAMIIS---PCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNE 513 (858)
T ss_pred HHHHHhcC---ccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccc
Confidence 64232221 22333333332222 256778899999999986542211 011111111112222222 334
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 011328 384 PRIVTVCLEGLENILKAGEA 403 (488)
Q Consensus 384 ~~v~~~al~~L~~l~~~~~~ 403 (488)
...|..+..+|+.++...+.
T Consensus 514 ~n~R~s~fsaLgtli~~~~d 533 (858)
T COG5215 514 SNLRVSLFSALGTLILICPD 533 (858)
T ss_pred hhHHHHHHHHHHHHHhhcch
Confidence 56777777888887766543
No 66
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.94 E-value=3.1e-06 Score=82.60 Aligned_cols=389 Identities=14% Similarity=0.113 Sum_probs=232.2
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCC-------CChhHHHHHHHHHHHhc
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-------DFPQLQFEAAWALTNIA 102 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~-------~~~~v~~~a~~~L~~l~ 102 (488)
+.+-.+++...|+|.+.+.-.+..+.+++... ......+...++|.++...... ++..+...+..+
T Consensus 636 evmlil~rEf~sPDeemkkivLKVv~qcc~t~--Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~i----- 708 (1172)
T KOG0213|consen 636 EVMLILIREFGSPDEEMKKIVLKVVKQCCATD--GVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEI----- 708 (1172)
T ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHHHhccc--CCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHH-----
Confidence 55667778888999999999999999977654 3334455667777777654322 111222222221
Q ss_pred CCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc--hhHHHHHhcCChHHHHHHhc-ccccHhHHHHH
Q 011328 103 SGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP--KCRDLVLSNGALMPLLAQFN-EHAKLSMLRNA 179 (488)
Q Consensus 103 ~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~l~~L~~ll~-~~~~~~v~~~a 179 (488)
...+-....+..++.-+.++.+..|..++.++..+...-+ .+...+ +...+..++.-+. ++++..+.-..
T Consensus 709 ------a~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderl-eE~lidgil~Afqeqtt~d~vml~g 781 (1172)
T KOG0213|consen 709 ------AAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERL-EERLIDGILYAFQEQTTEDSVMLLG 781 (1172)
T ss_pred ------HHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHH-HHHHHHHHHHHHHhcccchhhhhhh
Confidence 2222222345666666777888888888877777653221 111111 2223444444442 23334444455
Q ss_pred HHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchh--HHHHHHhCCHHHHHHhcCCCCcc
Q 011328 180 TWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK--IQAVIEAGVCPRLVELLRHPSPS 257 (488)
Q Consensus 180 ~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~--~~~~~~~~~l~~L~~lL~~~~~~ 257 (488)
..++++-... ........++..++..|++..+.++..++..++.++..-..+ .+.+...| -.|.+.|....++
T Consensus 782 fg~V~~~lg~---r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypE 856 (1172)
T KOG0213|consen 782 FGTVVNALGG---RVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPE 856 (1172)
T ss_pred HHHHHHHHhh---ccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHH
Confidence 5555443322 223344567778888999999999999999999887422111 12222223 3467778888888
Q ss_pred hHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 011328 258 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 337 (488)
Q Consensus 258 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~ 337 (488)
+.-..+.++..+...-.-....---.+++|.|..+|++. ..+++..+...++.++...++....--=..+---|+++|.
T Consensus 857 vLgsILgAikaI~nvigm~km~pPi~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLk 935 (1172)
T KOG0213|consen 857 VLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLK 935 (1172)
T ss_pred HHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH
Confidence 888877777766542211111111237899999999999 9999999999999999854442210000113334778888
Q ss_pred cCChhHHHHHHHHHHHhccCCCHHH-HHHHH----------------------H-C---CChHHHHhhcCCCCHHHHHHH
Q 011328 338 NAEFEIKKEAAWAISNATSGGSNEQ-IKFLV----------------------S-Q---GCIKPLCDLLNCPDPRIVTVC 390 (488)
Q Consensus 338 ~~~~~v~~~a~~aL~~l~~~~~~~~-~~~l~----------------------~-~---~~i~~L~~ll~~~~~~v~~~a 390 (488)
+.+.++|..|...++.++..-.+.. ...|. + . .+++.|++=...++..++.-+
T Consensus 936 ahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGV 1015 (1172)
T KOG0213|consen 936 AHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGV 1015 (1172)
T ss_pred HHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhH
Confidence 8888999999999999986543332 11111 1 1 235556665566777889999
Q ss_pred HHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 011328 391 LEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY 451 (488)
Q Consensus 391 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~ 451 (488)
+++++.++++-.+..+. |.-.+ ...|++-+-+.+.--++.|..++.++
T Consensus 1016 Lkalsf~Feyigemskd--------Yiyav-----~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 1016 LKALSFMFEYIGEMSKD--------YIYAV-----TPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred HHHHHHHHHHHHHHhhh--------HHHHh-----hHHHHHhhccccHHHHHHHHHHHHHH
Confidence 99999998875443221 11111 23444444444455555555555544
No 67
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=1.6e-06 Score=83.50 Aligned_cols=360 Identities=16% Similarity=0.136 Sum_probs=238.7
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011328 73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 152 (488)
Q Consensus 73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (488)
.++..++.-+..+. +.+|.....++..+........ .....+.+.+++......-+..+.+.++.+..+.. ..
T Consensus 96 ~~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~----~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~ 168 (569)
T KOG1242|consen 96 SIIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLS----GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IE 168 (569)
T ss_pred HHHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccC----HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hh
Confidence 35677778888888 8999988888877665211111 11246777888888888889999999999987654 34
Q ss_pred HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc
Q 011328 153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 232 (488)
Q Consensus 153 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~ 232 (488)
.+.+.+.+..+.+.+.+..+..-++.+..+.-..+..-........-..+|.++.-+.+....++..+..+...+...-+
T Consensus 169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~ 248 (569)
T KOG1242|consen 169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS 248 (569)
T ss_pred hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC
Confidence 56667788888888844333333444444444444433333444455667777777777788999888888777654432
Q ss_pred hhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHH
Q 011328 233 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 312 (488)
Q Consensus 233 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl 312 (488)
... ++ .+++.++.-+....+..+..++..++.++...+.+....+ ..++|.+.+.|.+. .+++|+.+..++.++
T Consensus 249 ~~a---VK-~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~DT-~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 249 AYA---VK-LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWDT-KPEVRKAGIETLLKF 322 (569)
T ss_pred cch---hh-HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 211 11 2344444444444788899999999999987776655444 47999999999999 999999999999999
Q ss_pred hc--CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHH
Q 011328 313 TA--GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVT 388 (488)
Q Consensus 313 ~~--~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 388 (488)
++ .+++ ++ .++|.|++.+.++.-.+ .++...|+.-.... ++..... .++.|.+-+...+..+..
T Consensus 323 ~svidN~d-I~-----~~ip~Lld~l~dp~~~~-~e~~~~L~~ttFV~~V~~psLal-----mvpiL~R~l~eRst~~kr 390 (569)
T KOG1242|consen 323 GSVIDNPD-IQ-----KIIPTLLDALADPSCYT-PECLDSLGATTFVAEVDAPSLAL-----MVPILKRGLAERSTSIKR 390 (569)
T ss_pred HHhhccHH-HH-----HHHHHHHHHhcCcccch-HHHHHhhcceeeeeeecchhHHH-----HHHHHHHHHhhccchhhh
Confidence 87 4444 22 26888999998876333 34555555443322 1111111 366677777777888889
Q ss_pred HHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC---CCCCCCCC
Q 011328 389 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDE---DEPLPPGD 465 (488)
Q Consensus 389 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~---~~~~~~~~ 465 (488)
.+..++.|++..-+.... ....+.+. ++.|........|++|..+.+.+..+.+.-.+ ++--|+++
T Consensus 391 ~t~~IidNm~~LveDp~~---------lapfl~~L--lp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~ 459 (569)
T KOG1242|consen 391 KTAIIIDNMCKLVEDPKD---------LAPFLPSL--LPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELS 459 (569)
T ss_pred hHHHHHHHHHHhhcCHHH---------HhhhHHHH--hhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHH
Confidence 999999999877643322 23333322 67788888888999999999998666555333 33356665
Q ss_pred CCC
Q 011328 466 ATQ 468 (488)
Q Consensus 466 ~~~ 468 (488)
++.
T Consensus 460 e~~ 462 (569)
T KOG1242|consen 460 ETL 462 (569)
T ss_pred Hhh
Confidence 444
No 68
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.87 E-value=3.9e-07 Score=90.94 Aligned_cols=392 Identities=15% Similarity=0.179 Sum_probs=223.7
Q ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 32 LPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 32 i~~l~~~L~s--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
+...++.|++ .|.+++..|+.++..+...-. +..... -...++.+++-|+. +-.|..|+++++.++...-..-
T Consensus 570 ~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg-D~l~~e-L~~~L~il~eRl~n---EiTRl~AvkAlt~Ia~S~l~i~ 644 (1233)
T KOG1824|consen 570 YDCTLQRLKATDSDQEVKERAISCMGQIIANFG-DFLGNE-LPRTLPILLERLGN---EITRLTAVKALTLIAMSPLDID 644 (1233)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh-hhhhhh-hHHHHHHHHHHHhc---hhHHHHHHHHHHHHHhccceee
Confidence 3446666764 578999999999999877542 221111 12456666666655 4578899999999998433332
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch-hHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK-CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 188 (488)
..-.-..+++.+..+++.....++...+.++-.+...... ......+ -++..+..++ ..++-.+...++.+|..+..
T Consensus 645 l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e-~vL~el~~Li-sesdlhvt~~a~~~L~tl~~ 722 (1233)
T KOG1824|consen 645 LSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLE-AVLVELPPLI-SESDLHVTQLAVAFLTTLAI 722 (1233)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH-HHHHHhhhhh-hHHHHHHHHHHHHHHHHHHh
Confidence 2222335688888888887777888877777776533211 1111111 1233344444 56677888899999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhccCC--hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCc-----chHhH
Q 011328 189 GKPQPLFEQTRPALPALERLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP-----SVLIP 261 (488)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~~ll~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-----~v~~~ 261 (488)
..+..-......+++.++.+++++- ......++.....+........ + ...++.++..+-+ .+...
T Consensus 723 ~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l------~-y~~l~s~lt~PV~~~~~~~l~kq 795 (1233)
T KOG1824|consen 723 IQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDL------D-YISLLSLLTAPVYEQVTDGLHKQ 795 (1233)
T ss_pred cccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCc------c-HHHHHHHHcCCcccccccchhHH
Confidence 8766666667889999999998863 3333333333333332222111 2 3445566655321 22333
Q ss_pred ----HHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 011328 262 ----ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 337 (488)
Q Consensus 262 ----a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~ 337 (488)
...|.+.++...++....+ +-..+.++.+...+..+|..|...++.+..+.+.. -..++...+++.++
T Consensus 796 a~~siA~cvA~Lt~~~~~~s~s~----a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s----~~~e~~~~iieaf~ 867 (1233)
T KOG1824|consen 796 AYYSIAKCVAALTCACPQKSKSL----ATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLS----PQNELKDTIIEAFN 867 (1233)
T ss_pred HHHHHHHHHHHHHHhccccchhH----HHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCC----cchhhHHHHHHHcC
Confidence 3444444444333222211 22334445544446788889999999988742111 11234557888999
Q ss_pred cCChhHHHHHHHHHHHhccCCCHHHHHHHHHCC---------ChHHHHhhcCCCCHH-HHHHHHHHHHHHHHhhhhhhcc
Q 011328 338 NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQG---------CIKPLCDLLNCPDPR-IVTVCLEGLENILKAGEAEKNM 407 (488)
Q Consensus 338 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~---------~i~~L~~ll~~~~~~-v~~~al~~L~~l~~~~~~~~~~ 407 (488)
+++.+|+..|..||++++.+.-+.+.+.+.+.- ++..|.+.+...... ....+-.+..-+++..+..+.
T Consensus 868 sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~ee- 946 (1233)
T KOG1824|consen 868 SPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEE- 946 (1233)
T ss_pred CChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchh-
Confidence 999999999999999999866555555554311 122233333322221 223333333334444333221
Q ss_pred CCCCccchHHHHH------HhhccHHHHHHhhcCCCHHHHHHHHHHHH
Q 011328 408 GNTGGVNLFAQAI------DDAEGLEKIENLQSHDNTEIYEKAVKILE 449 (488)
Q Consensus 408 ~~~~~~~~~~~~l------~~~g~~~~L~~l~~~~~~~v~~~a~~~l~ 449 (488)
+..|-..+.+ .....+.+|+..+.++.+..+..+...+.
T Consensus 947 ---gtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavK 991 (1233)
T KOG1824|consen 947 ---GTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVK 991 (1233)
T ss_pred ---hhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheee
Confidence 1111112211 11223677888888887777766666554
No 69
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=1.9e-07 Score=88.08 Aligned_cols=321 Identities=17% Similarity=0.114 Sum_probs=205.9
Q ss_pred HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch
Q 011328 70 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 149 (488)
Q Consensus 70 ~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~ 149 (488)
.-.+.+++.+..+.+++ ..+|..|+..+.|++. -........-..+...+.++..+.+..++. ++..+-.+..+-..
T Consensus 81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaK-v~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAK-VAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVT 157 (675)
T ss_pred HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHH-HhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcc
Confidence 34578899999999999 8999999999999987 222222222334566677776666666654 34444444322110
Q ss_pred hHHHHHhcCChHHHHHHhc---ccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHH
Q 011328 150 CRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSY 226 (488)
Q Consensus 150 ~~~~~~~~~~l~~L~~ll~---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~ 226 (488)
-+.. .--++.++.++. ...++..+...+.-+..+-..++..-......+++.+..+|.+++++++..+=.++++
T Consensus 158 e~~~---tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~ 234 (675)
T KOG0212|consen 158 ESAS---TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSE 234 (675)
T ss_pred cccc---ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 0010 112445555552 3457777877777676665544333444567889999999999999999777666665
Q ss_pred hcc---CCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHH
Q 011328 227 LSD---GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 303 (488)
Q Consensus 227 l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~ 303 (488)
+.. +++.. +-....++.++..+.++++.++..|+.-+..+..-.+... ...-++++..+++.+.+.+...++.
T Consensus 235 fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~ 310 (675)
T KOG0212|consen 235 FLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKE 310 (675)
T ss_pred HHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHH
Confidence 542 22211 1223677889999999999999999887877776444332 2234577888888887773334554
Q ss_pred HHHHHHHHHhc--CCHHHHHHHHH-cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC
Q 011328 304 EACWTISNITA--GNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 380 (488)
Q Consensus 304 ~a~~~L~nl~~--~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~ 380 (488)
.+...-..+.. +++...+. ++ ..+++.+...+.++..+.|..++.-+..+-.....+... ........|..-|.
T Consensus 311 ~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~--h~~~if~tLL~tLs 387 (675)
T KOG0212|consen 311 YAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLV--HNDSIFLTLLKTLS 387 (675)
T ss_pred HHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhh--hccHHHHHHHHhhc
Confidence 44433222222 11111111 22 236788888888988899988888888876554322222 23467888888899
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhh
Q 011328 381 CPDPRIVTVCLEGLENILKAGEA 403 (488)
Q Consensus 381 ~~~~~v~~~al~~L~~l~~~~~~ 403 (488)
+++.+++..++..+.+++.....
T Consensus 388 d~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 388 DRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred CchhHHHHHHHHHHHHHhcCccc
Confidence 99999999999999999876554
No 70
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.85 E-value=1.8e-06 Score=87.44 Aligned_cols=383 Identities=14% Similarity=0.136 Sum_probs=244.9
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
+..+..-++.+.+++.++..++.-+.++++.. ......+++++.+.++..+.. ..+|..|...+.++.......-
T Consensus 237 elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~----~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~ 311 (759)
T KOG0211|consen 237 ELRPIVQSLCQDDTPMVRRAVASNLGNIAKVL----ESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD 311 (759)
T ss_pred HHHHHHHhhccccchhhHHHHHhhhHHHHHHH----HHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch
Confidence 44455555556788999999999999987654 236677899999999999988 7999999999888876221111
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCC--------------------CchhH------------------
Q 011328 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD--------------------SPKCR------------------ 151 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~--------------------~~~~~------------------ 151 (488)
. ....+.+.++...++++..++.........+... ...-+
T Consensus 312 -d-~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~ 389 (759)
T KOG0211|consen 312 -D-VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNAS 389 (759)
T ss_pred -h-hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcc
Confidence 1 1223467777777777777776655544444311 00000
Q ss_pred --HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 011328 152 --DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 229 (488)
Q Consensus 152 --~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~ 229 (488)
..+.....++.+-.+. .+.+..++...+..+..+..-.+ .........|.....+++..+.|+....+.+..+-.
T Consensus 390 ~~~~i~~~~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~ 466 (759)
T KOG0211|consen 390 CYPNIPDSSILPEVQVLV-LDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEE 466 (759)
T ss_pred cccccchhhhhHHHHHHH-hcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHh
Confidence 0000111111111111 33344444443333333322211 223345677788888888899999998887766554
Q ss_pred CCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHH
Q 011328 230 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 309 (488)
Q Consensus 230 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L 309 (488)
..+...........++.+..+-....+.++.+.++.+..++.... ..+++...-+.+...+.+. ...+++.|+..+
T Consensus 467 v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l 542 (759)
T KOG0211|consen 467 VNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNL 542 (759)
T ss_pred ccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHh
Confidence 443333334455677778777777778899999999988886433 3444445566666677666 778999999999
Q ss_pred HHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHH
Q 011328 310 SNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV 389 (488)
Q Consensus 310 ~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 389 (488)
..++....... .....++.++.+...++...|...+.++.-++...+.+. ....+++.+.++.+++.+.|+..
T Consensus 543 ~~l~~~~G~~w---~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei----~~~~Llp~~~~l~~D~vanVR~n 615 (759)
T KOG0211|consen 543 PALVETFGSEW---ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI----TCEDLLPVFLDLVKDPVANVRIN 615 (759)
T ss_pred HHHHHHhCcch---hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH----HHHHHhHHHHHhccCCchhhhhh
Confidence 98887322111 112367778877777778889888888888876554443 33357999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHH
Q 011328 390 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 448 (488)
Q Consensus 390 al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l 448 (488)
++..|..+...-... ..+....+.++.+..+++.+++.+|....
T Consensus 616 vak~L~~i~~~L~~~---------------~~~~~v~pll~~L~~d~~~dvr~~a~~a~ 659 (759)
T KOG0211|consen 616 VAKHLPKILKLLDES---------------VRDEEVLPLLETLSSDQELDVRYRAILAF 659 (759)
T ss_pred HHHHHHHHHhhcchH---------------HHHHHHHHHHHHhccCcccchhHHHHHHH
Confidence 999999888765432 12233355666666677777766655544
No 71
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=1.4e-06 Score=82.34 Aligned_cols=355 Identities=10% Similarity=0.065 Sum_probs=224.8
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
+.+++++.++...|..++..|+..+.+++...+.+.... -..++..+.++..+++ ..++. ++..+-.+..+-...+
T Consensus 84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~--Fn~iFdvL~klsaDsd-~~V~~-~aeLLdRLikdIVte~ 159 (675)
T KOG0212|consen 84 KIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVY--FNEIFDVLCKLSADSD-QNVRG-GAELLDRLIKDIVTES 159 (675)
T ss_pred HhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccc--hHHHHHHHHHHhcCCc-ccccc-HHHHHHHHHHHhcccc
Confidence 678999999999999999999999999876543332222 2346667777777776 55554 4444444443111111
Q ss_pred H-HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHH-HhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011328 110 R-VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV-LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 187 (488)
Q Consensus 110 ~-~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~ 187 (488)
. .+-=.+++|.|-.-+...++..|...+.-|..+-..++ . +.+ .-...++.|++.| .+++.+++..+-.++..+.
T Consensus 160 ~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~-~-~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL 236 (675)
T KOG0212|consen 160 ASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD-L-EMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFL 236 (675)
T ss_pred ccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc-H-HHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHH
Confidence 1 22222445555555555788899888877777744332 2 222 1123567778888 7778888877777777766
Q ss_pred cCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCc-chHhHHHHH
Q 011328 188 RGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP-SVLIPALRT 265 (488)
Q Consensus 188 ~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~v~~~a~~~ 265 (488)
... .....+.....++.++..+.++++.++..|+.-+..+..-.+...- ..-.|++..+++++.+..+ .++..+...
T Consensus 237 ~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l-~~~s~il~~iLpc~s~~e~~~i~~~a~~~ 315 (675)
T KOG0212|consen 237 AEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLL-LYLSGILTAILPCLSDTEEMSIKEYAQMV 315 (675)
T ss_pred HHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchh-hhhhhhhhhcccCCCCCccccHHHHHHHH
Confidence 544 2233335567888899999999999999998888877765543322 3334777888888877655 355444332
Q ss_pred ---HhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChh
Q 011328 266 ---VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE 342 (488)
Q Consensus 266 ---L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~ 342 (488)
+..++.. +.....+--..+++.+.+.+.+. ..+.|..++.-+..+-...+... ......+++.|+.-|.+.+.+
T Consensus 316 n~~l~~l~s~-~~~~~~id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~sd~ 392 (675)
T KOG0212|consen 316 NGLLLKLVSS-ERLKEEIDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDRSDE 392 (675)
T ss_pred HHHHHHHHhh-hhhccccchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCchhH
Confidence 2223221 11111111124677888888888 88899988877777765434332 223456899999999999999
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011328 343 IKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 343 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~ 400 (488)
|...++..+.+++...+...... ++..|.+++..+..-+..++--+++.++-.
T Consensus 393 vvl~~L~lla~i~~s~~~~~~~~-----fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~l 445 (675)
T KOG0212|consen 393 VVLLALSLLASICSSSNSPNLRK-----FLLSLLEMFKEDTKLLEVRGNLIIRQLCLL 445 (675)
T ss_pred HHHHHHHHHHHHhcCcccccHHH-----HHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence 99999999999997654322221 344555555555544445555555555443
No 72
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.85 E-value=6.8e-07 Score=85.24 Aligned_cols=301 Identities=14% Similarity=0.145 Sum_probs=191.8
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch--hhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhH
Q 011328 74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE--NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151 (488)
Q Consensus 74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (488)
++...+++|++.. +.+|++|+...+.++.--.. --..+...| ..|-+.+...++++.-..+.+++.+..... ++
T Consensus 605 ivStiL~~L~~k~-p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~-~~ 680 (975)
T COG5181 605 IVSTILKLLRSKP-PDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHR-FR 680 (975)
T ss_pred HHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhc-cc
Confidence 4666778899999 99999999998887651111 112223333 345556677889988888888877754321 11
Q ss_pred HH-HHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhh-hchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 011328 152 DL-VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT-RPALPALERLIHSNDDEVLTDACWALSYLSD 229 (488)
Q Consensus 152 ~~-~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~ 229 (488)
.. ---.|+++.+...| ++....+..+....+..+|...+....... ..+.--|+..|.+.+.+++..|..+++.++.
T Consensus 681 ~mqpPi~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 681 SMQPPISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred ccCCchhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 00 01246788888888 778889999999999999998755332222 3344457778888999999999999999886
Q ss_pred CCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHH
Q 011328 230 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 309 (488)
Q Consensus 230 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L 309 (488)
.-..+ +++..|++-|+..+...|....-+++-.+..+. ...++|.|+.=-.++ +..|+...+.++
T Consensus 760 aiGPq-------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TP-e~nVQnGvLkam 824 (975)
T COG5181 760 AIGPQ-------DVLDILLNNLKVQERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETP-EANVQNGVLKAM 824 (975)
T ss_pred hcCHH-------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCc-hhHHHHhHHHHH
Confidence 54332 556677777766554444443334443333221 124566676666777 888888888888
Q ss_pred HHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHH-HHHHHHCCChHHHHhhcCCCCHHHH
Q 011328 310 SNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ-IKFLVSQGCIKPLCDLLNCPDPRIV 387 (488)
Q Consensus 310 ~nl~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~-~~~l~~~~~i~~L~~ll~~~~~~v~ 387 (488)
+.+... .....+.+.. +.|.|-..+.+.|+.-|+.|...+.+++.++..-. ...++. ++..|.--+-++.|.++
T Consensus 825 ~fmFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~sPhvi 900 (975)
T COG5181 825 CFMFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEPSPHVI 900 (975)
T ss_pred HHHHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCCCcHHH
Confidence 877652 1223333333 67888888888899999999999999998752110 011111 12222222235667777
Q ss_pred HHHHHHHHHHH
Q 011328 388 TVCLEGLENIL 398 (488)
Q Consensus 388 ~~al~~L~~l~ 398 (488)
....+.+..+.
T Consensus 901 ~~~~Eg~e~~~ 911 (975)
T COG5181 901 QSFDEGMESFA 911 (975)
T ss_pred HHHHHHHHHHH
Confidence 66666555543
No 73
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.84 E-value=2.6e-07 Score=93.02 Aligned_cols=277 Identities=17% Similarity=0.216 Sum_probs=206.6
Q ss_pred CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHH
Q 011328 43 DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV 122 (488)
Q Consensus 43 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 122 (488)
....|+.|........+....++- -+|..++.|-+. --|..|+..|+....-.+.....-+.-|++|.++
T Consensus 449 FFteQLTAFevWLd~gse~r~PPe-------QLPiVLQVLLSQ---vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVL 518 (1387)
T KOG1517|consen 449 FFTEQLTAFEVWLDYGSESRTPPE-------QLPIVLQVLLSQ---VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVL 518 (1387)
T ss_pred hHHHHHHHHHHHHHhccccCCChH-------hcchHHHHHHHH---HHHHHHHHHHHHHhccchhhhhhhhccchHHHHH
Confidence 345677777777766555433332 245555555543 3467789999999887888888888899999999
Q ss_pred HhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc--cHhHHHHHHHHHHHhhcCCCCCChh-hhh
Q 011328 123 RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCRGKPQPLFE-QTR 199 (488)
Q Consensus 123 ~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~--~~~v~~~a~~~L~~l~~~~~~~~~~-~~~ 199 (488)
++|++...++|-..+.+.+.|...++.|+..+++.++-...++.|..+. +++-+..++.+|+.++.+...-+.. ...
T Consensus 519 KLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~ 598 (1387)
T KOG1517|consen 519 KLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNG 598 (1387)
T ss_pred HHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccc
Confidence 9999999999999999999988777889888888877777777774422 4567788999999999887444333 446
Q ss_pred chHHHHHHhhccC-ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC----Cc
Q 011328 200 PALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG----DD 274 (488)
Q Consensus 200 ~~~~~l~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~----~~ 274 (488)
+.+..++..+.++ .+-++..++-+|+.+-++.+...=.-.+.+..+.|..+|.++-++||.+|+.+|+.+... .+
T Consensus 599 ~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fd 678 (1387)
T KOG1517|consen 599 NLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFD 678 (1387)
T ss_pred cHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccc
Confidence 7888888999885 688899999999999988776544456668889999999999999999999999999885 23
Q ss_pred hhhHHH------------hhCCCh---HHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChH
Q 011328 275 MQTQCI------------INHQAL---PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIG 330 (488)
Q Consensus 275 ~~~~~~------------~~~~~~---~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~ 330 (488)
+....+ ++..+. ..++..++.. .+-+|.+..-++..++.+.........-+...+
T Consensus 679 e~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~n~~~~ 748 (1387)
T KOG1517|consen 679 EQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLP 748 (1387)
T ss_pred hhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhhhhccc
Confidence 222222 122222 3566677777 889999999999999887666555544433333
No 74
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.82 E-value=2.7e-07 Score=85.17 Aligned_cols=273 Identities=17% Similarity=0.190 Sum_probs=192.8
Q ss_pred HHHHHHcCCHHHHHHhhcCCCC-hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhh
Q 011328 66 INEVIQSGVVPRFIEFLSRDDF-PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNV 143 (488)
Q Consensus 66 ~~~~~~~~~i~~L~~lL~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l 143 (488)
.+.+...|++..|+++++.++. ..+|.+|.+.|..+.. .++++.++..| +..++.+-+. +.++.....+.+|.++
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 4566678999999999999872 2469999999999875 68888888877 5555555543 6789999999999999
Q ss_pred hCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhccCChhHHHHHH
Q 011328 144 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIHSNDDEVLTDAC 221 (488)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al 221 (488)
..++.+....+++.|++..++-.. +..++.+.++++.+|.|++-+. .....+....+-..|..+-.+.|.-.+..+|
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 999988888899999999998888 6678999999999999988665 4455566677777888887788888999999
Q ss_pred HHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhH
Q 011328 222 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSI 301 (488)
Q Consensus 222 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v 301 (488)
.+...++.+.+ ....+.+.|.+..+-.++.+-+|..-.. --...+.++ ....++.|+.+|++. ..+.
T Consensus 329 lAV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~-R~EA 395 (832)
T KOG3678|consen 329 LAVAVLATNKE-VEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSN-RLEA 395 (832)
T ss_pred HHHhhhhhhhh-hhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhhcc-hhhh
Confidence 99999987764 3344666676666656665555432111 000111111 124578899999877 5555
Q ss_pred HHHHHHHHHHHhc-CC-HHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011328 302 KKEACWTISNITA-GN-VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 355 (488)
Q Consensus 302 ~~~a~~~L~nl~~-~~-~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~ 355 (488)
+..+++-++.=+. .+ ....+.+.+-|.+..|-++..+++..-...|-.+|.-+-
T Consensus 396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviG 451 (832)
T KOG3678|consen 396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIG 451 (832)
T ss_pred hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhc
Confidence 5555544443222 11 222334556788999999888776554455666665553
No 75
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=4.7e-06 Score=81.96 Aligned_cols=366 Identities=13% Similarity=0.148 Sum_probs=233.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHH
Q 011328 33 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 112 (488)
Q Consensus 33 ~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 112 (488)
..|..+|.|.....+..|..-+..+.... .+ -+..+|..++...+.+ .+++.-.---|...++..++.. +
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G-~d------vS~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLA--L 107 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKG-KD------VSLLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLA--L 107 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcC-Cc------HHHHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCce--e
Confidence 46888898888888888888777766554 22 2347889999999998 8999888878888887554432 1
Q ss_pred HhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCC
Q 011328 113 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ 192 (488)
Q Consensus 113 ~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~ 192 (488)
=-|..+-+-|.++++.+|..|+++|+.+=- +... +++-.-++....+..+-||..|+.++-.+-.-.+.
T Consensus 108 ---LSIntfQk~L~DpN~LiRasALRvlSsIRv--p~Ia------PI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e 176 (968)
T KOG1060|consen 108 ---LSINTFQKALKDPNQLIRASALRVLSSIRV--PMIA------PIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE 176 (968)
T ss_pred ---eeHHHHHhhhcCCcHHHHHHHHHHHHhcch--hhHH------HHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh
Confidence 137888999999999999999999998721 1111 11222233333677889999999999988765533
Q ss_pred CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC
Q 011328 193 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 272 (488)
Q Consensus 193 ~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 272 (488)
.. ..++..+-.+|.+.++.|.-.|+.+.-.+|.+.-+.+. +-...+.+++.+-++.-+...+..|...|+.
T Consensus 177 ~k----~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIH-----knyrklC~ll~dvdeWgQvvlI~mL~RYAR~ 247 (968)
T KOG1060|consen 177 QK----DQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIH-----KNYRKLCRLLPDVDEWGQVVLINMLTRYARH 247 (968)
T ss_pred hH----HHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhh-----HHHHHHHhhccchhhhhHHHHHHHHHHHHHh
Confidence 32 25666777888889999999999999888754332222 4457777777776666666666666666643
Q ss_pred C---chhh---------------------HHHh-hCC---ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHH
Q 011328 273 D---DMQT---------------------QCII-NHQ---ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 324 (488)
Q Consensus 273 ~---~~~~---------------------~~~~-~~~---~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 324 (488)
. +... .... +.+ +++..-.+|.+. ++.|...++.+...++-.+.
T Consensus 248 ~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~-n~sVVmA~aql~y~lAP~~~------- 319 (968)
T KOG1060|consen 248 QLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSR-NPSVVMAVAQLFYHLAPKNQ------- 319 (968)
T ss_pred cCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcC-CcHHHHHHHhHHHhhCCHHH-------
Confidence 1 1000 0000 100 223334456667 78888888888888865421
Q ss_pred HcCChHHHHHHHhcCChhHHHHHHHHHHHhccCC----------------CHHHHHH--------HHHCC----ChHHHH
Q 011328 325 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG----------------SNEQIKF--------LVSQG----CIKPLC 376 (488)
Q Consensus 325 ~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~----------------~~~~~~~--------l~~~~----~i~~L~ 376 (488)
..+++..|+++|.++ ..+|...+..+..++... ++...+. +.... +++-|.
T Consensus 320 ~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q 398 (968)
T KOG1060|consen 320 VTKIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQ 398 (968)
T ss_pred HHHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHH
Confidence 123567788877664 455655666665555322 1111111 11111 234444
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011328 377 DLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 377 ~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~ 454 (488)
.++++.+..+...+..+|++.....-.. +.-++.-|..++.+.+..|...|...+.++...
T Consensus 399 ~YI~s~d~~faa~aV~AiGrCA~~~~sv-----------------~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~ 459 (968)
T KOG1060|consen 399 TYIKSSDRSFAAAAVKAIGRCASRIGSV-----------------TDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQK 459 (968)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHhhCch-----------------hhHHHHHHHHHHhcccchhHHHHHHHHHHHHhh
Confidence 5556666667777777887776543321 122356677777777777877777777777654
No 76
>PF05536 Neurochondrin: Neurochondrin
Probab=98.79 E-value=2.2e-05 Score=78.20 Aligned_cols=380 Identities=15% Similarity=0.110 Sum_probs=235.0
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCcc--HHHHHHcCCHHHHHHhhcCCC------ChhHHHHHHHHHHHh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP--INEVIQSGVVPRFIEFLSRDD------FPQLQFEAAWALTNI 101 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~~i~~L~~lL~~~~------~~~v~~~a~~~L~~l 101 (488)
..+...+..|++.+.+-++.++..+.+++...+... .+.+.+.-+.+.+-++|.++. ....+.-|+.+|..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 456778899999888899999999999887653222 334667777899999998732 156778888899999
Q ss_pred cCCCchhh--HHHHhCCCHHHHHHhhCCCCH-HHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHH
Q 011328 102 ASGTSENT--RVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRN 178 (488)
Q Consensus 102 ~~~~~~~~--~~~~~~g~i~~L~~~L~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~ 178 (488)
+. .|+.. ..++ +-||.|++.+.+.+. .+...|+.+|..++.. +..++.+.+.|.++.|.+.+.+ .+.....
T Consensus 85 ~~-~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~ 158 (543)
T PF05536_consen 85 CR-DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPN--QSFQMEI 158 (543)
T ss_pred cC-ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHh--CcchHHH
Confidence 98 66554 3333 469999999988666 9999999999999954 5568889999999999999844 5566788
Q ss_pred HHHHHHHhhcCCCC----CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchh-HH----HHHHhCCHHHHHH
Q 011328 179 ATWTLSNFCRGKPQ----PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK-IQ----AVIEAGVCPRLVE 249 (488)
Q Consensus 179 a~~~L~~l~~~~~~----~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~-~~----~~~~~~~l~~L~~ 249 (488)
++.++.+++..... ........+++.+...+.......+..++..|..+....+.. .. .-.-..+...+..
T Consensus 159 Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~ 238 (543)
T PF05536_consen 159 ALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRD 238 (543)
T ss_pred HHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHH
Confidence 88888888765432 122233456677777777767777788888888887655311 01 1111234444555
Q ss_pred hcCC-CCcchHhHHHHHHhHhhcCCchhhHHHh-hC-----CChHHHHHHh---------------cccchhh-------
Q 011328 250 LLRH-PSPSVLIPALRTVGNIVTGDDMQTQCII-NH-----QALPCLLDLL---------------TQNYKKS------- 300 (488)
Q Consensus 250 lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~-----~~~~~L~~lL---------------~~~~~~~------- 300 (488)
++++ ..+.-|..++...+.+..... .+.++ +. .++-.++++. +.+....
T Consensus 239 iL~sr~~~~~R~~al~Laa~Ll~~~G--~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~ 316 (543)
T PF05536_consen 239 ILQSRLTPSQRDPALNLAASLLDLLG--PEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLAS 316 (543)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhC--hHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHH
Confidence 6655 456677777777777765311 11111 00 1222222221 1110111
Q ss_pred ---HHHHHHHHHHHHhc-----CCHHHHHHHHH--cCChHHHHHHHhcC------ChhHHHHHHHHHHHhccCCCHHHHH
Q 011328 301 ---IKKEACWTISNITA-----GNVNQIQAIIE--AGIIGPLVNLLLNA------EFEIKKEAAWAISNATSGGSNEQIK 364 (488)
Q Consensus 301 ---v~~~a~~~L~nl~~-----~~~~~~~~l~~--~~~l~~L~~ll~~~------~~~v~~~a~~aL~~l~~~~~~~~~~ 364 (488)
+-+.....+.+-.. -+++....+.. .+.+..++.+|.+- ++.....+.++|+......+...++
T Consensus 317 cf~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~ 396 (543)
T PF05536_consen 317 CFSILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRK 396 (543)
T ss_pred HHHHHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHH
Confidence 11112222222111 02333444332 34566666677543 3336677888888887765544455
Q ss_pred HHHHCCChHHHHhhcCCCCHH----------HHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHh
Q 011328 365 FLVSQGCIKPLCDLLNCPDPR----------IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL 432 (488)
Q Consensus 365 ~l~~~~~i~~L~~ll~~~~~~----------v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l 432 (488)
.+. ++++.++++.+..... .+...+-+|..+..-.. .++.+...|+.+.+.+.
T Consensus 397 ~v~--~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~~-------------gr~~l~~~~g~~~l~~~ 459 (543)
T PF05536_consen 397 EVY--GLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEEE-------------GRKILLSNGGWKLLCDD 459 (543)
T ss_pred HHH--HHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccHH-------------HHHHHHhCCcHHHHHHH
Confidence 543 6889999988754332 34444555555543222 47777778886666653
No 77
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=6.3e-06 Score=80.66 Aligned_cols=324 Identities=14% Similarity=0.081 Sum_probs=166.8
Q ss_pred hhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCCh
Q 011328 81 FLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 160 (488)
Q Consensus 81 lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l 160 (488)
=|++++ +-+|-..++.|+.+=. ++... ..+|.+...|++.+.-+|++|..++..+-.... ..+ .++-
T Consensus 107 DLQHPN-EyiRG~TLRFLckLkE--~ELle-----pl~p~IracleHrhsYVRrNAilaifsIyk~~~---~L~--pDap 173 (948)
T KOG1058|consen 107 DLQHPN-EYIRGSTLRFLCKLKE--PELLE-----PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE---HLI--PDAP 173 (948)
T ss_pred hccCch-HhhcchhhhhhhhcCc--HHHhh-----hhHHHHHHHHhCcchhhhhhhheeehhHHhhhh---hhc--CChH
Confidence 355666 6777777777666643 33322 357888889999999999999999988864421 111 1233
Q ss_pred HHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc---cCChhHHHHHHHHHHHhccCCchhHHH
Q 011328 161 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---SNDDEVLTDACWALSYLSDGTNDKIQA 237 (488)
Q Consensus 161 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~---~~~~~v~~~al~~L~~l~~~~~~~~~~ 237 (488)
+.+-..|....|+..+++|...|...-.. .++..+...+. +-++.++...+..+...+...+....
T Consensus 174 eLi~~fL~~e~DpsCkRNAFi~L~~~D~E----------rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~- 242 (948)
T KOG1058|consen 174 ELIESFLLTEQDPSCKRNAFLMLFTTDPE----------RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKA- 242 (948)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHhcCHH----------HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhh-
Confidence 33444555667888888877666543221 12222222221 12344444444455544443332222
Q ss_pred HHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC-----------------Cchh-hHHHh--------------hCCC
Q 011328 238 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG-----------------DDMQ-TQCII--------------NHQA 285 (488)
Q Consensus 238 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~-----------------~~~~-~~~~~--------------~~~~ 285 (488)
..+..+..+|.+.++.++..|..+|..++.. .+.+ .+.+. -.+.
T Consensus 243 ----~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l 318 (948)
T KOG1058|consen 243 ----RYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGL 318 (948)
T ss_pred ----HHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHH
Confidence 2334455555444444444444333333321 1110 00000 0133
Q ss_pred hHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHH
Q 011328 286 LPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIK 364 (488)
Q Consensus 286 ~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 364 (488)
+.-++++|.++ +-++|+.++.....++. ++-+.+-.+++..+...--. =+..+...|+.-..++...+..- ++...
T Consensus 319 ~mDvLrvLss~-dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~F-p~~aa 395 (948)
T KOG1058|consen 319 IMDVLRVLSSP-DLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKF-PEVAA 395 (948)
T ss_pred HHHHHHHcCcc-cccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcC-hHHHH
Confidence 44445555556 66666666666666655 23332222222111111000 00012234566666666665543 33332
Q ss_pred HHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHH
Q 011328 365 FLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 444 (488)
Q Consensus 365 ~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a 444 (488)
.+++.|++.+.+.++.....++..++..+...+... ..+. -..++.+-.-.+.++..-|
T Consensus 396 -----tvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr------------~~ii----~~l~~~~~~irS~ki~rga 454 (948)
T KOG1058|consen 396 -----TVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR------------ASII----EKLLETFPQIRSSKICRGA 454 (948)
T ss_pred -----HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH------------HHHH----HHHHHhhhhhcccccchhH
Confidence 358888888888888777777777777776655432 1111 1112233333456778888
Q ss_pred HHHHHHhcCCCC
Q 011328 445 VKILETYWVEED 456 (488)
Q Consensus 445 ~~~l~~~~~~~~ 456 (488)
.|++..|.+.++
T Consensus 455 lwi~GeYce~~~ 466 (948)
T KOG1058|consen 455 LWILGEYCEGLS 466 (948)
T ss_pred HHHHHHHHhhhH
Confidence 888888887766
No 78
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.76 E-value=3.5e-07 Score=92.09 Aligned_cols=233 Identities=15% Similarity=0.189 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhh
Q 011328 46 IQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL 125 (488)
Q Consensus 46 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L 125 (488)
-|++|+..|..++.-. ...+..-..-|++|..++||+++. .++|..-+.+-+.|..-++.+...+++.++-..+++.|
T Consensus 486 HRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL 563 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVL 563 (1387)
T ss_pred HHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEe
Confidence 4677899999988765 667777778899999999999999 89999999999998887899999999988888888888
Q ss_pred CC---CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCC-hhhhhch
Q 011328 126 SS---PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL-FEQTRPA 201 (488)
Q Consensus 126 ~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~ 201 (488)
.. -+++-|..|+.+|+.++.+-+-.++.+.+.+.+...+.+++.+..+-++.-++-+|..|-.+.+..+ .-...++
T Consensus 564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~A 643 (1387)
T KOG1517|consen 564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNA 643 (1387)
T ss_pred cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccH
Confidence 76 3468999999999999988777788888989999888999554567788899999999998874443 3445789
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhccCC----chhHHHH------------HHhCCH---HHHHHhcCCCCcchHhHH
Q 011328 202 LPALERLIHSNDDEVLTDACWALSYLSDGT----NDKIQAV------------IEAGVC---PRLVELLRHPSPSVLIPA 262 (488)
Q Consensus 202 ~~~l~~ll~~~~~~v~~~al~~L~~l~~~~----~~~~~~~------------~~~~~l---~~L~~lL~~~~~~v~~~a 262 (488)
...|..+|+++-++|+..|+.+|+.+..+. ++....+ ++.-+. -.++.+++..++-++...
T Consensus 644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev 723 (1387)
T KOG1517|consen 644 HEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEV 723 (1387)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHH
Confidence 999999999999999999999999988752 2222211 121112 245566677778888888
Q ss_pred HHHHhHhhcCCchhhHHH
Q 011328 263 LRTVGNIVTGDDMQTQCI 280 (488)
Q Consensus 263 ~~~L~~l~~~~~~~~~~~ 280 (488)
.-++..++.+.......+
T Consensus 724 ~v~ls~~~~g~~~~~~~v 741 (1387)
T KOG1517|consen 724 VVALSHFVVGYVSHLKVV 741 (1387)
T ss_pred HHHHHHHHHhhHHHhHHH
Confidence 888888777665544433
No 79
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=1e-05 Score=71.18 Aligned_cols=272 Identities=15% Similarity=0.148 Sum_probs=180.7
Q ss_pred HHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHH
Q 011328 161 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE 240 (488)
Q Consensus 161 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~ 240 (488)
..++.++ .+.++.++..|+.-+..++..............++.+.+++...++ .+.++.++.|++.... ..+.++.
T Consensus 6 ~elv~ll-~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~~ll~ 81 (353)
T KOG2973|consen 6 VELVELL-HSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRKKLLQ 81 (353)
T ss_pred HHHHHHh-ccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHHHHHH
Confidence 4567777 7889999999999999888772222222335677888899887766 7788999999998764 3344555
Q ss_pred hCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHh------hCCChHHHHHHhcccchhhH-HHHHHHHHHHHh
Q 011328 241 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII------NHQALPCLLDLLTQNYKKSI-KKEACWTISNIT 313 (488)
Q Consensus 241 ~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~------~~~~~~~L~~lL~~~~~~~v-~~~a~~~L~nl~ 313 (488)
. ++..++..+.++........+..+.|++........... +.+.+.......+++.+... -...+.+++|++
T Consensus 82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls 160 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS 160 (353)
T ss_pred H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence 4 888888888888888999999999999986554433222 24556666666665534222 235667778887
Q ss_pred cCCHHHHHHHHHcCChH--HHHHHHhcCChhHH-HHHHHHHHHhccCCCHHHHHHHHH----------------------
Q 011328 314 AGNVNQIQAIIEAGIIG--PLVNLLLNAEFEIK-KEAAWAISNATSGGSNEQIKFLVS---------------------- 368 (488)
Q Consensus 314 ~~~~~~~~~l~~~~~l~--~L~~ll~~~~~~v~-~~a~~aL~~l~~~~~~~~~~~l~~---------------------- 368 (488)
.. +..+..+.+...++ .+..+ .+.+..|| ...+..|.|.+... ..-..+..
T Consensus 161 ~~-~~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~--~~h~~lL~e~~~lLp~iLlPlagpee~sEE 236 (353)
T KOG2973|consen 161 QF-EAGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDA--KLHEVLLDESINLLPAILLPLAGPEELSEE 236 (353)
T ss_pred hh-hhhhhHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccc--hhHHHHhcchHHHHHHHHhhcCCccccCHH
Confidence 64 44455555544322 22222 23445555 44677778866533 11122211
Q ss_pred --CCChHHHHhhcC-----CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhh-cCCCHHH
Q 011328 369 --QGCIKPLCDLLN-----CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTEI 440 (488)
Q Consensus 369 --~~~i~~L~~ll~-----~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~-~~~~~~v 440 (488)
.+...-| +++. .+++.++...+++|..++.... .++.++..|+...++.+- ..+++++
T Consensus 237 dm~~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLcaT~~-------------GRe~lR~kgvYpilRElhk~e~ded~ 302 (353)
T KOG2973|consen 237 DMAKLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCATRA-------------GREVLRSKGVYPILRELHKWEEDEDI 302 (353)
T ss_pred HHhcCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHhhhH-------------hHHHHHhcCchHHHHHHhcCCCcHHH
Confidence 1122222 4443 3578899999999988876544 488999999999999994 5578999
Q ss_pred HHHHHHHHHHhcCCC
Q 011328 441 YEKAVKILETYWVEE 455 (488)
Q Consensus 441 ~~~a~~~l~~~~~~~ 455 (488)
+.++.++..-+...|
T Consensus 303 ~~ace~vvq~Lv~~e 317 (353)
T KOG2973|consen 303 REACEQVVQMLVRLE 317 (353)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999988888877743
No 80
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=1.2e-05 Score=79.18 Aligned_cols=256 Identities=18% Similarity=0.185 Sum_probs=142.4
Q ss_pred hhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCCh
Q 011328 81 FLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 160 (488)
Q Consensus 81 lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l 160 (488)
+..+.. +.||..|+.++-.+-.-+++....+ ++.+-.+|.+.++-+.-.|+.++-.+|-+. -+.+ .+..
T Consensus 151 ~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evCPer---ldLI--Hkny 219 (968)
T KOG1060|consen 151 AVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPER---LDLI--HKNY 219 (968)
T ss_pred HhcCCc-HHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhchhH---HHHh--hHHH
Confidence 334455 6667777766666666555555533 345555666677777777777776666332 1111 1234
Q ss_pred HHHHHHhcccccHhHHHHHHHHHHHhhcCC-CCCCh----------------------------hhhhchHHHHHHhhcc
Q 011328 161 MPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLF----------------------------EQTRPALPALERLIHS 211 (488)
Q Consensus 161 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~-~~~~~----------------------------~~~~~~~~~l~~ll~~ 211 (488)
..+.+++ .+-++==+..++..|...++.. +.... .-..-+++..-.++.+
T Consensus 220 rklC~ll-~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S 298 (968)
T KOG1060|consen 220 RKLCRLL-PDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQS 298 (968)
T ss_pred HHHHhhc-cchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhc
Confidence 4555555 2222222333444444444433 11100 0012234444566778
Q ss_pred CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHh----------
Q 011328 212 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII---------- 281 (488)
Q Consensus 212 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~---------- 281 (488)
.++.+...++.+...++.... .. .++..|+.+|+++ ..++...+..+..++...+......+
T Consensus 299 ~n~sVVmA~aql~y~lAP~~~--~~-----~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp 370 (968)
T KOG1060|consen 299 RNPSVVMAVAQLFYHLAPKNQ--VT-----KIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDP 370 (968)
T ss_pred CCcHHHHHHHhHHHhhCCHHH--HH-----HHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCH
Confidence 889999999999999885432 22 4567788877764 45777777777777754332211111
Q ss_pred ---------------hCC----ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChh
Q 011328 282 ---------------NHQ----ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE 342 (488)
Q Consensus 282 ---------------~~~----~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~ 342 (488)
... +++-+...+++. +..+...++.+|+.++...... ...++.-|+.++.+.+..
T Consensus 371 ~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~-d~~faa~aV~AiGrCA~~~~sv-----~~tCL~gLv~Llsshde~ 444 (968)
T KOG1060|consen 371 TQVKILKLEILSNLANESNISEILRELQTYIKSS-DRSFAAAAVKAIGRCASRIGSV-----TDTCLNGLVQLLSSHDEL 444 (968)
T ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHhhCch-----hhHHHHHHHHHHhcccch
Confidence 111 122223333444 4456667777777776532221 223566788888888888
Q ss_pred HHHHHHHHHHHhccCCCHHH
Q 011328 343 IKKEAAWAISNATSGGSNEQ 362 (488)
Q Consensus 343 v~~~a~~aL~~l~~~~~~~~ 362 (488)
|..++...+..|......+.
T Consensus 445 Vv~eaV~vIk~Llq~~p~~h 464 (968)
T KOG1060|consen 445 VVAEAVVVIKRLLQKDPAEH 464 (968)
T ss_pred hHHHHHHHHHHHHhhChHHH
Confidence 88888888888876554333
No 81
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.70 E-value=9.7e-07 Score=81.59 Aligned_cols=266 Identities=14% Similarity=0.107 Sum_probs=180.8
Q ss_pred ccHHHHHHHhcCCCH--HHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch
Q 011328 30 ESLPAMVAGVWSDDR--NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 107 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 107 (488)
|++..|++.+++++- +++.++++.|.+++..+ +.+.+...| +..++.+-+....++.+...+.+|.++..++.+
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~ae---N~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVAE---NRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhh---hhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 788899999998764 56999999999998754 455666655 555666656555478899999999999999999
Q ss_pred hhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC-chhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHh
Q 011328 108 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 186 (488)
Q Consensus 108 ~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l 186 (488)
....++..|++..++...+..++.+..+|+.+|+|++-+. ...+..+++..+.+.|..+. .+.|+-.+.+||.+.+.+
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl 334 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL 334 (832)
T ss_pred HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence 9999999999999999999989999999999999998543 45567777777777777776 666888899999999999
Q ss_pred hcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHH
Q 011328 187 CRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 266 (488)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L 266 (488)
+.+.+........+.+..+-.++.+-|+.-- +....+..+ -...+-++.|+.+|++..-+.+.-+.+-+
T Consensus 335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~F----------ARD~hd~aQ-G~~~d~LqRLvPlLdS~R~EAq~i~AF~l 403 (832)
T KOG3678|consen 335 ATNKEVEREVRKSGTLALVEPLVASLDPGRF----------ARDAHDYAQ-GRGPDDLQRLVPLLDSNRLEAQCIGAFYL 403 (832)
T ss_pred hhhhhhhHHHhhccchhhhhhhhhccCcchh----------hhhhhhhhc-cCChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence 9887655555555555544455554444221 111111111 11124577888888865544443333322
Q ss_pred hHhhc-CC-chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHH
Q 011328 267 GNIVT-GD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 312 (488)
Q Consensus 267 ~~l~~-~~-~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl 312 (488)
+.=+. .. ....+.+-+-|.++.|-++.+++ +.--.+.|..+|.-+
T Consensus 404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtvi 450 (832)
T KOG3678|consen 404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVI 450 (832)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHh
Confidence 22111 11 11233344668888888888877 544334444444433
No 82
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.69 E-value=8.9e-06 Score=76.78 Aligned_cols=335 Identities=16% Similarity=0.062 Sum_probs=207.9
Q ss_pred HHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccc-ccHhHH
Q 011328 98 LTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSML 176 (488)
Q Consensus 98 L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~ 176 (488)
|..+....++.+..+.-....+.+..++-+++.++|..+.+++..+..+... -..+...+.-..++.-|.++ .+..-+
T Consensus 7 Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER 85 (371)
T PF14664_consen 7 LVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVER 85 (371)
T ss_pred HHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHH
Confidence 4444444565555554444556666555555599999999999999887664 45555555544555556443 344568
Q ss_pred HHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCc
Q 011328 177 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP 256 (488)
Q Consensus 177 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 256 (488)
.+|+..+..+..... .....-.+++..++.+..+.++..+..++.++..++-.++ +.+...|++..+.+.+.++..
T Consensus 86 ~QALkliR~~l~~~~-~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~ 161 (371)
T PF14664_consen 86 EQALKLIRAFLEIKK-GPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSF 161 (371)
T ss_pred HHHHHHHHHHHHhcC-CcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccH
Confidence 899999988887642 1223356889999999999999999999999999998776 457888999999999987666
Q ss_pred chHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhccc------chh--hHHHHHHHHHHHHhcCCHHHHHHHHH-cC
Q 011328 257 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN------YKK--SIKKEACWTISNITAGNVNQIQAIIE-AG 327 (488)
Q Consensus 257 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~------~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~-~~ 327 (488)
++....+.++..+.. .+..++.+...--++.++.-+.+. .+. +.-..+..++..+...=+...-...+ ..
T Consensus 162 ~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~ 240 (371)
T PF14664_consen 162 SISESLLDTLLYLLD-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFR 240 (371)
T ss_pred hHHHHHHHHHHHHhC-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCch
Confidence 688888888888876 454555444433455555544332 012 22334445555554421221111111 14
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHH------CCCh---HHHHhhcCCCC---HHHHHHHHHHHH
Q 011328 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS------QGCI---KPLCDLLNCPD---PRIVTVCLEGLE 395 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~------~~~i---~~L~~ll~~~~---~~v~~~al~~L~ 395 (488)
.+..|+..|..+++++|+..+..+..+..-..+.....+.. .+-. ..+..-..... +.....-...+.
T Consensus 241 ~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~ 320 (371)
T PF14664_consen 241 GLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVN 320 (371)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHH
Confidence 68889999999999999999999999987554332222111 1111 00000000000 000000001111
Q ss_pred HHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC-CHHHHHHHHHHHHHhcC
Q 011328 396 NILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-NTEIYEKAVKILETYWV 453 (488)
Q Consensus 396 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~-~~~v~~~a~~~l~~~~~ 453 (488)
+... .....|.++|.++.|.++..+. ++.+..+|.-+|..++.
T Consensus 321 ~y~a---------------Lll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 321 HYLA---------------LLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred HHHH---------------HHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 1110 0345578899999999997665 88999999999987653
No 83
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=2.4e-05 Score=76.41 Aligned_cols=256 Identities=15% Similarity=0.168 Sum_probs=180.4
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011328 73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 152 (488)
Q Consensus 73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (488)
+.-+-++.+|.++. +.+|..|+.++..+....|+... ..+|.|..-|+++++.++..|..+++.|++.+|..
T Consensus 144 DLa~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn-- 215 (877)
T KOG1059|consen 144 DLADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN-- 215 (877)
T ss_pred HHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc--
Confidence 34556778899998 89999999999999886666544 34799999999999999999999999999888753
Q ss_pred HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCC-hhHHHHHHHHHHH--hcc
Q 011328 153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND-DEVLTDACWALSY--LSD 229 (488)
Q Consensus 153 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~v~~~al~~L~~--l~~ 229 (488)
.+ ..-+.+.++|-.+++.=+....+..+.+|+.-.| .....+++.+..++++.. ..+...++.++.. ++.
T Consensus 216 yL---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP----RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 216 YL---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP----RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred cc---cccHHHHHHHhccCCCeehHHHHHHHhhccccCc----hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence 11 2455666777555555566777777777775433 233567888999998763 5566666666543 333
Q ss_pred CCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHH
Q 011328 230 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 309 (488)
Q Consensus 230 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L 309 (488)
+.++... -+. -+++.|-.++.+.++.++..++-+++.+....+...+. .-+.+++.|.+. +..+|..|+..+
T Consensus 289 g~~d~~a-siq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~Dk-D~SIRlrALdLl 360 (877)
T KOG1059|consen 289 GMSDHSA-SIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDK-DESIRLRALDLL 360 (877)
T ss_pred CCCCcHH-HHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccC-CchhHHHHHHHH
Confidence 3222222 111 34677777788899999999999999999876655442 356789999999 999999999999
Q ss_pred HHHhcCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccCC
Q 011328 310 SNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGG 358 (488)
Q Consensus 310 ~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~ 358 (488)
.-+... ++... ++..|+..+... ....|.+.+.-+..+++..
T Consensus 361 ~gmVsk--kNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~s 403 (877)
T KOG1059|consen 361 YGMVSK--KNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQS 403 (877)
T ss_pred HHHhhh--hhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhh
Confidence 888753 33333 344455544443 3466777666666666543
No 84
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=6.3e-05 Score=66.84 Aligned_cols=342 Identities=15% Similarity=0.156 Sum_probs=225.9
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCcc---HHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch
Q 011328 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP---INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 107 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 107 (488)
.+|.|-..|..++..++..++..+..++.+.+... +..+++.++++.++..+-.++ .++...|...+..++. .+.
T Consensus 83 lmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpa 160 (524)
T KOG4413|consen 83 LMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPA 160 (524)
T ss_pred hhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHH
Confidence 34555556667899999999999999887653222 344558899999999999998 8999999999999998 788
Q ss_pred hhHHHHhCCCHHHHH--HhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHH
Q 011328 108 NTRVVIDHGAVPIFV--RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 185 (488)
Q Consensus 108 ~~~~~~~~g~i~~L~--~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~ 185 (488)
....+++......+- .+-...+.-.|-..+..+..+.+-++.....+...|.+..|..-+....|.-++.+++.....
T Consensus 161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte 240 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE 240 (524)
T ss_pred HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence 888888776655432 233335666777788888888888888888888889888888888555777888899999999
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhcc--CChhHHHHHHHHHHHhccCCc--h-hHHHHHHh--CCHHHHHHhcCCCCcch
Q 011328 186 FCRGKPQPLFEQTRPALPALERLIHS--NDDEVLTDACWALSYLSDGTN--D-KIQAVIEA--GVCPRLVELLRHPSPSV 258 (488)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~l~~ll~~--~~~~v~~~al~~L~~l~~~~~--~-~~~~~~~~--~~l~~L~~lL~~~~~~v 258 (488)
++.......+....++++.+..++.- .++--.-.++...+.+..... + .-+.+++. -.++..+.....+++..
T Consensus 241 LaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpda 320 (524)
T KOG4413|consen 241 LAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDA 320 (524)
T ss_pred HHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchH
Confidence 98877777777888999999888873 344434444444444332210 0 01122221 23444556667788999
Q ss_pred HhHHHHHHhHhhcCCchhhHHHhhCCC--hHHHH-HHhcccchhhHHHHHHHHHHHHhc---CCHHHH----------HH
Q 011328 259 LIPALRTVGNIVTGDDMQTQCIINHQA--LPCLL-DLLTQNYKKSIKKEACWTISNITA---GNVNQI----------QA 322 (488)
Q Consensus 259 ~~~a~~~L~~l~~~~~~~~~~~~~~~~--~~~L~-~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~----------~~ 322 (488)
+..|..+++.+-+.. +..+.+.+.|- ...++ +..... ...-+..+..+|.+++. -.++.+ ..
T Consensus 321 ieaAiDalGilGSnt-eGadlllkTgppaaehllarafdqn-ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrcl 398 (524)
T KOG4413|consen 321 IEAAIDALGILGSNT-EGADLLLKTGPPAAEHLLARAFDQN-AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCL 398 (524)
T ss_pred HHHHHHHHHhccCCc-chhHHHhccCChHHHHHHHHHhccc-ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHH
Confidence 999999999987743 34444444332 22332 233222 33345567777777765 112211 11
Q ss_pred HHH-------cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHh
Q 011328 323 IIE-------AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 377 (488)
Q Consensus 323 l~~-------~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ 377 (488)
+++ ..-...+..+++.+.++++..+..++..++... =.....+...++++...+
T Consensus 399 ifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqP-WalkeifakeefieiVtD 459 (524)
T KOG4413|consen 399 IFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQP-WALKEIFAKEEFIEIVTD 459 (524)
T ss_pred HHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCc-HHHHHHhcCccceeeecc
Confidence 111 123556677788889999999999999998542 122333334455554444
No 85
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=4e-05 Score=74.07 Aligned_cols=346 Identities=17% Similarity=0.195 Sum_probs=221.9
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
..+..+++.+..+.+.+|.....++..+......... ..+.+.+.+++...+ ..-+..+.+.+..+..+. ..
T Consensus 96 ~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~-----~~~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g~--~i 167 (569)
T KOG1242|consen 96 SIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG-----EYVLELLLELLTSTK-IAERAGAAYGLAGLVNGL--GI 167 (569)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH-----HHHHHHHHHHhcccc-HHHHhhhhHHHHHHHcCc--HH
Confidence 3456677777888899998888888876554322222 235677888888777 788899999999888743 34
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHH-HHHHHHHHhhhhCC-CchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011328 110 RVVIDHGAVPIFVRLLSSPTDDV-REQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 187 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~~~~~~v-~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~ 187 (488)
..+.+.+++..+.+...+..... |+.++.+....+.. .+.....+.. .++.++... .+....++..+..+...+.
T Consensus 168 ~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~--~lp~il~~~-~d~~~~Vr~Aa~~a~kai~ 244 (569)
T KOG1242|consen 168 ESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVP--ILPSILTNF-GDKINKVREAAVEAAKAIM 244 (569)
T ss_pred hhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHh--hHHHHHHHh-hccchhhhHHHHHHHHHHH
Confidence 45566788899999888744333 33333333322221 1111112221 344444444 4556678877777766655
Q ss_pred cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011328 188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 267 (488)
Q Consensus 188 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~ 267 (488)
..-+. ....-++|.++.-+....+.....++..++.++...+.+.. ..-..++|.+.+.|.+..+++|..+..++.
T Consensus 245 ~~~~~---~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~evr~a~~~~l~ 320 (569)
T KOG1242|consen 245 RCLSA---YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKPEVRKAGIETLL 320 (569)
T ss_pred HhcCc---chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCHHHHHHHHHHHH
Confidence 43211 12234455555555555788889999999999988776655 445589999999999999999999999999
Q ss_pred HhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-C--CHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 011328 268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-G--NVNQIQAIIEAGIIGPLVNLLLNAEFEIK 344 (488)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~--~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 344 (488)
.++.--+.. . +. ..++.|++.+.++ ...+ .++...|+.=.. + .+... .-++|.|.+-+...+...+
T Consensus 321 ~~~svidN~-d--I~-~~ip~Lld~l~dp-~~~~-~e~~~~L~~ttFV~~V~~psL-----almvpiL~R~l~eRst~~k 389 (569)
T KOG1242|consen 321 KFGSVIDNP-D--IQ-KIIPTLLDALADP-SCYT-PECLDSLGATTFVAEVDAPSL-----ALMVPILKRGLAERSTSIK 389 (569)
T ss_pred HHHHhhccH-H--HH-HHHHHHHHHhcCc-ccch-HHHHHhhcceeeeeeecchhH-----HHHHHHHHHHHhhccchhh
Confidence 988632211 1 11 3677888888877 4222 223333332111 0 11111 1146666666777788899
Q ss_pred HHHHHHHHHhccCC-CHH-HHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 011328 345 KEAAWAISNATSGG-SNE-QIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA 403 (488)
Q Consensus 345 ~~a~~aL~~l~~~~-~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~ 403 (488)
+.++..+.|++.-- ++. ..+++-+ +++.|...+.+..|++|..+..+|..+.+....
T Consensus 390 r~t~~IidNm~~LveDp~~lapfl~~--Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~ 448 (569)
T KOG1242|consen 390 RKTAIIIDNMCKLVEDPKDLAPFLPS--LLPGLKENLDDAVPEVRAVAARALGALLERLGE 448 (569)
T ss_pred hhHHHHHHHHHHhhcCHHHHhhhHHH--HhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHh
Confidence 99999999998643 333 3344333 677777778888999999999999888776543
No 86
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.3e-05 Score=81.27 Aligned_cols=313 Identities=12% Similarity=0.179 Sum_probs=206.9
Q ss_pred ChhhHHHHhhhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHH
Q 011328 19 DPMFFIIQLQLESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWA 97 (488)
Q Consensus 19 ~~~~~~~~~~~~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~ 97 (488)
...|.+....++.++-+...|.+ .++.++..|+..+..+.+. .+....+...+++..|+.+|++. |..|..++.+
T Consensus 1760 asvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~v 1835 (2235)
T KOG1789|consen 1760 ASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDV 1835 (2235)
T ss_pred hhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHH
Confidence 34455555566888888888885 7889999999999887654 57788899999999999999876 5889999999
Q ss_pred HHHhcCCCchhhHHHHhCCCHHHHHHhh-CCCCHHHHHHHHHHHhhhhCCC---chhHHHHHh----------cCChHHH
Q 011328 98 LTNIASGTSENTRVVIDHGAVPIFVRLL-SSPTDDVREQAVWALGNVAGDS---PKCRDLVLS----------NGALMPL 163 (488)
Q Consensus 98 L~~l~~~~~~~~~~~~~~g~i~~L~~~L-~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~----------~~~l~~L 163 (488)
|..+++ +++....-.+.|++..+..++ .+.++..|..++..++.+..+. |..+-.++. .+.-+..
T Consensus 1836 LYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAa 1914 (2235)
T KOG1789|consen 1836 LYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAA 1914 (2235)
T ss_pred HHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHH
Confidence 999999 777777777888777777654 5678999999999999997543 211111111 0111333
Q ss_pred HHHhcc-ccc------HhHHHHHHHHHHHhhc----CC---C--------------------------------------
Q 011328 164 LAQFNE-HAK------LSMLRNATWTLSNFCR----GK---P-------------------------------------- 191 (488)
Q Consensus 164 ~~ll~~-~~~------~~v~~~a~~~L~~l~~----~~---~-------------------------------------- 191 (488)
+..+.. +++ +..+......+..+.. .. +
T Consensus 1915 VH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~L 1994 (2235)
T KOG1789|consen 1915 VHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNL 1994 (2235)
T ss_pred HHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcc
Confidence 333321 111 1222222222322211 00 0
Q ss_pred CCChhhhhchHHHHHHhhccCC--hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011328 192 QPLFEQTRPALPALERLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 269 (488)
Q Consensus 192 ~~~~~~~~~~~~~l~~ll~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l 269 (488)
........+.+..+.+++..++ .......-.++..+....+...+.+-..|.+|.++..+...+..+-..|++.|..+
T Consensus 1995 R~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~L 2074 (2235)
T KOG1789|consen 1995 RHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHEL 2074 (2235)
T ss_pred cCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHH
Confidence 0011222445555666665443 22233333344445555566666666679999999999887777789999999999
Q ss_pred hcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcC
Q 011328 270 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNA 339 (488)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~ll~~~ 339 (488)
+. +..+.+.+.....+..++..+... ....--|+.+|..+.. ...+.....++.|++|.|+.+|...
T Consensus 2075 se-n~~C~~AMA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2075 SE-NQFCCDAMAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred hh-ccHHHHHHhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 87 556666676667777788877654 2334467777877776 3455666677899999999999865
No 87
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.9e-05 Score=69.99 Aligned_cols=317 Identities=15% Similarity=0.130 Sum_probs=203.3
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHH--HHhhcCCCChhHHHHHHHHHHHhcCCCch
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF--IEFLSRDDFPQLQFEAAWALTNIASGTSE 107 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L--~~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 107 (488)
+.++.++.++..+|.++...|...+..++.. +.....+.+++....+ .++-...+ .-.|...+..+..+.+-+++
T Consensus 128 eilklildcIggeddeVAkAAiesikrialf--paaleaiFeSellDdlhlrnlaakcn-diaRvRVleLIieifSiSpe 204 (524)
T KOG4413|consen 128 EILKLILDCIGGEDDEVAKAAIESIKRIALF--PAALEAIFESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSISPE 204 (524)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--HHHHHHhcccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcCHH
Confidence 7889999999999999999999999997654 3444555555544443 23323333 46788888999999998999
Q ss_pred hhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc-cccHhHHHHHHHHHHH
Q 011328 108 NTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTLSN 185 (488)
Q Consensus 108 ~~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~v~~~a~~~L~~ 185 (488)
..+..-+.|.+..|..-++. ++.-++.+++.....++...- .++.+...|.++.+.+.+.. ++++--.-.++.....
T Consensus 205 saneckkSGLldlLeaElkGteDtLVianciElvteLaeteH-greflaQeglIdlicnIIsGadsdPfekfralmgfgk 283 (524)
T KOG4413|consen 205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH-GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGK 283 (524)
T ss_pred HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh-hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHH
Confidence 99999999999999988876 788889999999999886443 36677777888877777732 2344333345555555
Q ss_pred hhcCCCCCC------hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCC--HHHH-HHhcCCCCc
Q 011328 186 FCRGKPQPL------FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV--CPRL-VELLRHPSP 256 (488)
Q Consensus 186 l~~~~~~~~------~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~--l~~L-~~lL~~~~~ 256 (488)
+........ ......++....+++..+|+..+..+..+++.+.++... .+.+.+.|- ...+ ......+..
T Consensus 284 ffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteG-adlllkTgppaaehllarafdqnah 362 (524)
T KOG4413|consen 284 FFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEG-ADLLLKTGPPAAEHLLARAFDQNAH 362 (524)
T ss_pred HhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcch-hHHHhccCChHHHHHHHHHhccccc
Confidence 444321111 111133455556777889999999999999999876543 354555443 2222 333333444
Q ss_pred chHhHHHHHHhHhhcCCc---hh----------hHHHh-------hCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC
Q 011328 257 SVLIPALRTVGNIVTGDD---MQ----------TQCII-------NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 316 (488)
Q Consensus 257 ~v~~~a~~~L~~l~~~~~---~~----------~~~~~-------~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 316 (488)
.-+..++.+|.+++.... ++ +..++ +..-...+..+++.+ .++++..+..++..++...
T Consensus 363 akqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaaqP 441 (524)
T KOG4413|consen 363 AKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAAQP 441 (524)
T ss_pred chHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHcCc
Confidence 456677888888775321 10 11111 113356677788888 8999999999999998763
Q ss_pred HHHHHHHHHcCChHHHHHHHhcC---ChhHHHHHHHHHH
Q 011328 317 VNQIQAIIEAGIIGPLVNLLLNA---EFEIKKEAAWAIS 352 (488)
Q Consensus 317 ~~~~~~l~~~~~l~~L~~ll~~~---~~~v~~~a~~aL~ 352 (488)
=-....+...+++..+...-... ..+-|.+++.++.
T Consensus 442 WalkeifakeefieiVtDastEhaKaakdAkYeccKAia 480 (524)
T KOG4413|consen 442 WALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIA 480 (524)
T ss_pred HHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHH
Confidence 33333333456665554432222 2234444454443
No 88
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=1.4e-05 Score=70.40 Aligned_cols=272 Identities=14% Similarity=0.188 Sum_probs=175.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHH--HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI--QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
...+++++.+.+|.++..|+..+..+... ..+.+. +...++.+.+++...+ + ...|+.++.|++. .++.+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq-~~~l~ 76 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQ-KEELR 76 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHh-hHHHH
Confidence 44688999999999999999999887654 122222 3457888889998887 5 6788999999999 78888
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhc-----CChHHHHHHhcccc-c-HhHHHHHHHH
Q 011328 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN-----GALMPLLAQFNEHA-K-LSMLRNATWT 182 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----~~l~~L~~ll~~~~-~-~~v~~~a~~~ 182 (488)
+.++.. .+..+...+.++...+....+..++|++++...+....... .++..++....+.+ + ..-..+.+..
T Consensus 77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence 888876 77777778877777888889999999999887665554332 23444444432222 2 1334566777
Q ss_pred HHHhhcCCCCCChhhhhchH--HHHHHhhccCChhHH-HHHHHHHHHhccCCchhHHHHHHh--CCHHHH----------
Q 011328 183 LSNFCRGKPQPLFEQTRPAL--PALERLIHSNDDEVL-TDACWALSYLSDGTNDKIQAVIEA--GVCPRL---------- 247 (488)
Q Consensus 183 L~~l~~~~~~~~~~~~~~~~--~~l~~ll~~~~~~v~-~~al~~L~~l~~~~~~~~~~~~~~--~~l~~L---------- 247 (488)
++++++.............+ +.+..+-. .+..+| ...+.+|.|.|-....... +++. .+++.+
T Consensus 156 f~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e~~~lLp~iLlPlagpee~ 233 (353)
T KOG2973|consen 156 FANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEV-LLDESINLLPAILLPLAGPEEL 233 (353)
T ss_pred HHHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHH-HhcchHHHHHHHHhhcCCcccc
Confidence 88888766444433333322 22333323 444553 4466777777654432211 2221 122222
Q ss_pred -----------HHhcC-----CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011328 248 -----------VELLR-----HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 311 (488)
Q Consensus 248 -----------~~lL~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n 311 (488)
++.|. .+++.+|..-+.+|..++. ....++.+...|+.+.+-.+=+...+++++..+-.....
T Consensus 234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~ 312 (353)
T KOG2973|consen 234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQM 312 (353)
T ss_pred CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 13332 2467899999999999987 445667777777777777766666567777666665555
Q ss_pred HhcC
Q 011328 312 ITAG 315 (488)
Q Consensus 312 l~~~ 315 (488)
+...
T Consensus 313 Lv~~ 316 (353)
T KOG2973|consen 313 LVRL 316 (353)
T ss_pred HHhc
Confidence 5553
No 89
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=3.1e-07 Score=86.12 Aligned_cols=309 Identities=13% Similarity=0.109 Sum_probs=194.7
Q ss_pred HHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcc
Q 011328 133 REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHS 211 (488)
Q Consensus 133 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~ 211 (488)
..+++.+|..+++.....|.-+.+..+.+.|++.| .+++..+...+...++|+.-.. +-.......+++..++.++.+
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s 484 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence 34455566666666566677788888899999999 5555556666777777766544 444556668999999999999
Q ss_pred CChhHHHHHHHHHHHhccCCchh--HHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch---hhHHHhhC---
Q 011328 212 NDDEVLTDACWALSYLSDGTNDK--IQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM---QTQCIINH--- 283 (488)
Q Consensus 212 ~~~~v~~~al~~L~~l~~~~~~~--~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~---~~~~~~~~--- 283 (488)
.|..++....|.+..+..+..+. .+ .+..-++..++.+..++...++..++.++.|+.+.+.. .....++.
T Consensus 485 KDdaLqans~wvlrHlmyncq~~ekf~-~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~ 563 (743)
T COG5369 485 KDDALQANSEWVLRHLMYNCQKNEKFK-FLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPR 563 (743)
T ss_pred chhhhhhcchhhhhhhhhcCcchhhhh-hHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChH
Confidence 99999999999999998665433 33 44446789999999999999999999999999984433 11112221
Q ss_pred -CChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcC-----------ChhHHHHHHHH
Q 011328 284 -QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNA-----------EFEIKKEAAWA 350 (488)
Q Consensus 284 -~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~ll~~~-----------~~~v~~~a~~a 350 (488)
-+.+.+.+.+... ++-.-...++.|.+++..+......+.+ ..++..+..++... ..++-..-...
T Consensus 564 ~ylfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~ 642 (743)
T COG5369 564 RYLFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYT 642 (743)
T ss_pred HHHHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCcccee
Confidence 2456677777776 6666667788999888865554444443 33455444444321 11122222222
Q ss_pred HHHhccCCCHHHHHHHHHCCChHHHHhhcC---CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHH
Q 011328 351 ISNATSGGSNEQIKFLVSQGCIKPLCDLLN---CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLE 427 (488)
Q Consensus 351 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~---~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 427 (488)
..++..+.+ ...+..... +.+-.+=+ +++.++-....|.+.++....+..+.. +..-.....+.+.|.-+
T Consensus 643 ~v~l~e~~d-~f~r~~~~~---p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vt---ratveR~~iL~~~G~~e 715 (743)
T COG5369 643 IVNLSENSD-KFKRLVLTT---PHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVT---RATVERIQILCANGIRE 715 (743)
T ss_pred eeccccccc-ccccceecC---CCccccccccCCCchhhhhccceEEEecccCccCCccc---hhhHHHHHHHHHccHHH
Confidence 233322211 111111100 11111111 234456666677777754333222211 01111367788899999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHh
Q 011328 428 KIENLQSHDNTEIYEKAVKILETY 451 (488)
Q Consensus 428 ~L~~l~~~~~~~v~~~a~~~l~~~ 451 (488)
-++.++.++++.|++++..+|.++
T Consensus 716 ~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 716 WLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred HHHHHhccCcHHHHHHHHHHHHhh
Confidence 999999999999999999988764
No 90
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=5.8e-05 Score=73.61 Aligned_cols=302 Identities=12% Similarity=0.088 Sum_probs=187.1
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCC-hhHHHHHHHHHHHhcCCCchhh
Q 011328 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF-PQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
.+..+.+.|.|.|+.....|+.++.++.+.+ ....+ -+-+-++|.++++ +-++..|+.||..+...+|+..
T Consensus 112 vin~iknDL~srn~~fv~LAL~~I~niG~re---~~ea~-----~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~ 183 (938)
T KOG1077|consen 112 VINSIKNDLSSRNPTFVCLALHCIANIGSRE---MAEAF-----ADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLV 183 (938)
T ss_pred HHHHHHhhhhcCCcHHHHHHHHHHHhhccHh---HHHHh-----hhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcccc
Confidence 4556777788899999999999999986643 22222 1222356655542 5689999999999998766543
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc---c---------cccHhHHH
Q 011328 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---E---------HAKLSMLR 177 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~---~---------~~~~~v~~ 177 (488)
. ..+....++.+|.+.+..+...+...+..++...++....... -.+..|..... . -+.+=++.
T Consensus 184 ~---~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~v 259 (938)
T KOG1077|consen 184 N---PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQV 259 (938)
T ss_pred C---hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHH
Confidence 2 3367889999999988888888888888888766653222111 01222222221 0 02344566
Q ss_pred HHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC--C-----hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHh
Q 011328 178 NATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--D-----DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 250 (488)
Q Consensus 178 ~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~--~-----~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 250 (488)
.++.+|.++-...+.........++..++...+.+ . ......++.-..+++.+-+..-+.+. ..+..|-++
T Consensus 260 Kl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~f 337 (938)
T KOG1077|consen 260 KLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQF 337 (938)
T ss_pred HHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHH
Confidence 66777766622222222223334444444443311 1 12223333333344433222212222 457788889
Q ss_pred cCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChH
Q 011328 251 LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIG 330 (488)
Q Consensus 251 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~ 330 (488)
+.+.+..+|..|+..++.++.... ....+-. . .+.++..|+...+..+|+.|+..|..++.. ++.+ .++.
T Consensus 338 ls~rE~NiRYLaLEsm~~L~ss~~-s~davK~-h-~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak-----~IV~ 407 (938)
T KOG1077|consen 338 LSHRETNIRYLALESMCKLASSEF-SIDAVKK-H-QDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAK-----QIVA 407 (938)
T ss_pred hhcccccchhhhHHHHHHHHhccc-hHHHHHH-H-HHHHHHHhccccchHHHHHHHHHHHHHhch--hhHH-----HHHH
Confidence 999999999999999999998633 2333333 2 778889998665999999999999998863 2222 2566
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcc
Q 011328 331 PLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 331 ~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
.|++.|.+.++.+|+....=.+-++.
T Consensus 408 elLqYL~tAd~sireeivlKvAILaE 433 (938)
T KOG1077|consen 408 ELLQYLETADYSIREEIVLKVAILAE 433 (938)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 68888888888888776665555554
No 91
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=1.8e-05 Score=76.53 Aligned_cols=220 Identities=15% Similarity=0.140 Sum_probs=149.4
Q ss_pred HHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc-----hhHHH
Q 011328 163 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-----DKIQA 237 (488)
Q Consensus 163 L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~-----~~~~~ 237 (488)
+..+. .+.|..++.+|+.+|..|..+. ..-.-.....++++++.+..|+..|+..+.......+ +..+.
T Consensus 203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 56665 7788899999999999888743 2223456778899999999999999776665543221 11111
Q ss_pred HHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHH--hc-
Q 011328 238 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI--TA- 314 (488)
Q Consensus 238 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl--~~- 314 (488)
-.....+..+...+.+.+..+|..|..+|+.+-.-+++...+.++..++..+-..-. ..+..-...++- ++
T Consensus 277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~------ahkrpk~l~s~GewSsG 350 (823)
T KOG2259|consen 277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRT------AHKRPKALYSSGEWSSG 350 (823)
T ss_pred hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhh------cccchHHHHhcCCcccC
Confidence 222256788888899999999999999999987766655555444333332211110 011111111211 11
Q ss_pred ----------CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCH
Q 011328 315 ----------GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 384 (488)
Q Consensus 315 ----------~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 384 (488)
...+.-..++.+|.-..++.-+.+.-.+||..|...++.++... +..... .++.|++++.++..
T Consensus 351 k~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P~FA~~-----aldfLvDMfNDE~~ 424 (823)
T KOG2259|consen 351 KEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-PGFAVR-----ALDFLVDMFNDEIE 424 (823)
T ss_pred ccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-CCcHHH-----HHHHHHHHhccHHH
Confidence 11223345777888888888888888899999999999999754 344333 58999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 011328 385 RIVTVCLEGLENILKA 400 (488)
Q Consensus 385 ~v~~~al~~L~~l~~~ 400 (488)
.++..++.+|..|...
T Consensus 425 ~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 425 VVRLKAIFALTMISVH 440 (823)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988765
No 92
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.58 E-value=2.3e-05 Score=74.88 Aligned_cols=242 Identities=17% Similarity=0.055 Sum_probs=165.3
Q ss_pred ccHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328 30 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 30 ~~i~~l~~~L~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
..++.++..|. .+++.+...++..+.. .+ .. ..+..|++.|.+.+ +.++..++.+|+.+-.
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~---~~-~~--------~~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~----- 115 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLA---QE-DA--------LDLRSVLAVLQAGP-EGLCAGIQAALGWLGG----- 115 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhc---cC-Ch--------HHHHHHHHHhcCCC-HHHHHHHHHHHhcCCc-----
Confidence 34666777774 4566666655555432 11 11 13788888888888 7899999988876543
Q ss_pred hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328 109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 188 (488)
....+.|+.+|++.++.++..++.+++.... ...+.+...| ++.++.++..++.+|..+-.
T Consensus 116 ------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~ 176 (410)
T TIGR02270 116 ------RQAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAAL-THEDALVRAAALRALGELPR 176 (410)
T ss_pred ------hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHh-cCCCHHHHHHHHHHHHhhcc
Confidence 2456788888888889999888877766321 1245677777 68888999999999988765
Q ss_pred CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011328 189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268 (488)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 268 (488)
. ..++.|...+.+.++.|+..++.++..+.. + ..+..+..............+..++..
T Consensus 177 ~----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~g~~~~~~l~~~lal 235 (410)
T TIGR02270 177 R----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLEGGPHRQRLLVLLAV 235 (410)
T ss_pred c----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhccCccHHHHHHHHHHh
Confidence 4 456667788888899999999998876633 1 122344443333333344333333333
Q ss_pred hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHH
Q 011328 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA 348 (488)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 348 (488)
. ..+ ..++.|..+++++ . ++..++++++.+-. + ..++.|+..+.+. .++..|.
T Consensus 236 ~--~~~---------~a~~~L~~ll~d~-~--vr~~a~~AlG~lg~--p---------~av~~L~~~l~d~--~~aR~A~ 288 (410)
T TIGR02270 236 A--GGP---------DAQAWLRELLQAA-A--TRREALRAVGLVGD--V---------EAAPWCLEAMREP--PWARLAG 288 (410)
T ss_pred C--Cch---------hHHHHHHHHhcCh-h--hHHHHHHHHHHcCC--c---------chHHHHHHHhcCc--HHHHHHH
Confidence 3 111 4677888888876 3 89999999997743 2 3677888877764 3999999
Q ss_pred HHHHHhcc
Q 011328 349 WAISNATS 356 (488)
Q Consensus 349 ~aL~~l~~ 356 (488)
.++..++-
T Consensus 289 eA~~~ItG 296 (410)
T TIGR02270 289 EAFSLITG 296 (410)
T ss_pred HHHHHhhC
Confidence 99999985
No 93
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=1.4e-05 Score=84.17 Aligned_cols=390 Identities=14% Similarity=0.122 Sum_probs=227.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC-CCchhhHHH
Q 011328 34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS-GTSENTRVV 112 (488)
Q Consensus 34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~ 112 (488)
.+...+.|.+|..|..++.-|..+...-....-.......+...+.++|.+.+ +-+|..|.+.++-+-+ ++...++.+
T Consensus 822 ~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k~~L 900 (1702)
T KOG0915|consen 822 LLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLKKSL 900 (1702)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhHHHH
Confidence 35555668999988876655554444332222222333456688889999988 7888888888776654 334444444
Q ss_pred HhCCCHHHHHHhhCC---------CCHHHH-------------HHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccc
Q 011328 113 IDHGAVPIFVRLLSS---------PTDDVR-------------EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH 170 (488)
Q Consensus 113 ~~~g~i~~L~~~L~~---------~~~~v~-------------~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~ 170 (488)
+ ..|+.-|.. ++.++- -....=|++|+.+-. ....+-..+++.+.+
T Consensus 901 V-----~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~-------qPdLVYKFM~LAnh~ 968 (1702)
T KOG0915|consen 901 V-----DSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG-------QPDLVYKFMQLANHN 968 (1702)
T ss_pred H-----HHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC-------ChHHHHHHHHHhhhh
Confidence 3 344433321 111111 112223444443211 011233445555444
Q ss_pred ccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHh
Q 011328 171 AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 250 (488)
Q Consensus 171 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 250 (488)
-...-+.-|+..+..++..............+|.|.++=-+++..|+.....+-..+..++....+...+ ++++-|+.-
T Consensus 969 A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~ 1047 (1702)
T KOG0915|consen 969 ATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVN 1047 (1702)
T ss_pred chhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHh
Confidence 4445566677777777776544455566778888888888899999888777777777766555554444 788888888
Q ss_pred cCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHH---HHHHHHhcC-----CHHHHHH
Q 011328 251 LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC---WTISNITAG-----NVNQIQA 322 (488)
Q Consensus 251 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~---~~L~nl~~~-----~~~~~~~ 322 (488)
+.+..+.+|+++|.+|..+..+.+.....-.-..+...+.+.+++- .+.||..|- .+++.++.. +...-+.
T Consensus 1048 lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~ 1126 (1702)
T KOG0915|consen 1048 LTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKGKE 1126 (1702)
T ss_pred ccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHH
Confidence 9999999999999999999987653211100113455566666665 667776554 445554431 1111222
Q ss_pred HHHcCChHHHHH--HHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHH-HHHHHHHHHH
Q 011328 323 IIEAGIIGPLVN--LLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV-CLEGLENILK 399 (488)
Q Consensus 323 l~~~~~l~~L~~--ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~-al~~L~~l~~ 399 (488)
.++ .++|.|+. ++ +.-.++|..++.++..++..........+- .+++.|++....-++.+..+ ++++ .++-.
T Consensus 1127 ~l~-~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vLnYls~r~-~~~e~ 1201 (1702)
T KOG0915|consen 1127 ALD-IILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVLNYLSLRL-INIET 1201 (1702)
T ss_pred HHH-HHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHHHHHHHhh-hhhHH
Confidence 222 24555543 22 446789999999999999877665555544 37888888888766655443 3333 22211
Q ss_pred -hhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011328 400 -AGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 400 -~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~ 454 (488)
.-+.. ....-...-.++.+..+.++-+..|-..-.--+..+.++
T Consensus 1202 ealDt~-----------R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~ 1246 (1702)
T KOG0915|consen 1202 EALDTL-----------RASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRG 1246 (1702)
T ss_pred HHHHHH-----------HHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 11100 122223344577777777776666655544444444443
No 94
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=1.6e-07 Score=87.96 Aligned_cols=302 Identities=14% Similarity=0.134 Sum_probs=202.8
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccc
Q 011328 91 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH 170 (488)
Q Consensus 91 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~ 170 (488)
...++.+|..++.+-.-.|.-+.+..+.+.|+++|++++..+...+...++|+.-.-.+.+..+.+.+++..+++++ .+
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v-~s 484 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLV-MS 484 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHh-hc
Confidence 34455667777775566788888999999999999998888888888888998766666888999999999999999 66
Q ss_pred ccHhHHHHHHHHHHHhhcCC-CCCChhh-hhchHHHHHHhhccCChhHHHHHHHHHHHhccCCch---hHHHHHHh----
Q 011328 171 AKLSMLRNATWTLSNFCRGK-PQPLFEQ-TRPALPALERLIHSNDDEVLTDACWALSYLSDGTND---KIQAVIEA---- 241 (488)
Q Consensus 171 ~~~~v~~~a~~~L~~l~~~~-~~~~~~~-~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~---~~~~~~~~---- 241 (488)
.|..++.+..|.+.++..+. ...+... ..-.+..++.+..++...++..++..+.|+..+... ..+..++.
T Consensus 485 KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ 564 (743)
T COG5369 485 KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRR 564 (743)
T ss_pred chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHH
Confidence 78899999999999998776 3333333 356788999999999999999999999999864332 11222222
Q ss_pred CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHh-hCCChHHHHHHhccc---------c-hhhHHHHHHHHHH
Q 011328 242 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQN---------Y-KKSIKKEACWTIS 310 (488)
Q Consensus 242 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~lL~~~---------~-~~~v~~~a~~~L~ 310 (488)
-+...+++.+...+|-.....+.+|.+++..++.....+. ....+..+..+|... + ...+-..-..+..
T Consensus 565 ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v 644 (743)
T COG5369 565 YLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIV 644 (743)
T ss_pred HHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeee
Confidence 1445666777777887777889999999887776655544 234444455544211 0 1111112222233
Q ss_pred HHhcCCHHHHHHHHHcCChHHHHHHHhc----CChhHHHHHHHHHHHhccC--------CCHHHHHHHHHCCChHHHHhh
Q 011328 311 NITAGNVNQIQAIIEAGIIGPLVNLLLN----AEFEIKKEAAWAISNATSG--------GSNEQIKFLVSQGCIKPLCDL 378 (488)
Q Consensus 311 nl~~~~~~~~~~l~~~~~l~~L~~ll~~----~~~~v~~~a~~aL~~l~~~--------~~~~~~~~l~~~~~i~~L~~l 378 (488)
++...+.+..+.+.-. |.+= ..+. ++.+.-.+..|...|+.-. ++.+.++.+.+.|.-+.+..+
T Consensus 645 ~l~e~~d~f~r~~~~~---p~~D-~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~ 720 (743)
T COG5369 645 NLSENSDKFKRLVLTT---PHLD-NMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKI 720 (743)
T ss_pred cccccccccccceecC---CCcc-ccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHH
Confidence 3332111110000000 1111 1122 1345666677777775421 134677888999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q 011328 379 LNCPDPRIVTVCLEGLENI 397 (488)
Q Consensus 379 l~~~~~~v~~~al~~L~~l 397 (488)
..++.+.+++.+-.+|.++
T Consensus 721 q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 721 QAKDSLIVREKIGTALENL 739 (743)
T ss_pred hccCcHHHHHHHHHHHHhh
Confidence 9999999999998888765
No 95
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.51 E-value=3.5e-06 Score=64.49 Aligned_cols=155 Identities=10% Similarity=0.055 Sum_probs=126.7
Q ss_pred CChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHH
Q 011328 284 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 363 (488)
Q Consensus 284 ~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 363 (488)
+.+..|++-.+...+.+.+.....-|.|++.. |-+...+.+.++++.++..+...+..+++.++.+|+|++. ++...
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n~ 92 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTNA 92 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHHH
Confidence 34566777666665888999999999999876 7778888899999999999999999999999999999986 45788
Q ss_pred HHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHH
Q 011328 364 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK 443 (488)
Q Consensus 364 ~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~ 443 (488)
+.+.+.+.++.++..+.++...++..++.++..+...+.. .++.+-.-..++.++++..+.+-+.+..
T Consensus 93 ~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt------------~r~ell~p~Vv~~v~r~~~s~s~~~rnL 160 (173)
T KOG4646|consen 93 KFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT------------ERDELLSPAVVRTVQRWRESKSHDERNL 160 (173)
T ss_pred HHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc------------hhHHhccHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999999999998888888888766554443 3556666667788888887777777888
Q ss_pred HHHHHHHhcC
Q 011328 444 AVKILETYWV 453 (488)
Q Consensus 444 a~~~l~~~~~ 453 (488)
|...++.+..
T Consensus 161 a~~fl~~~~~ 170 (173)
T KOG4646|consen 161 ASAFLDKHVH 170 (173)
T ss_pred HHHHHHhhcc
Confidence 8888877654
No 96
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=0.00016 Score=70.64 Aligned_cols=304 Identities=15% Similarity=0.126 Sum_probs=184.8
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc-cccHhHHHHHHHHHHHhhcCCCCCChh
Q 011328 118 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGKPQPLFE 196 (488)
Q Consensus 118 i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~ 196 (488)
+..+.+=|.+.++.....|+.+++|+.+. +.++.+. ..+-++|.. ++..-++..++.+|..|.+.. ....
T Consensus 113 in~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~s--pDl~ 183 (938)
T KOG1077|consen 113 INSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKS--PDLV 183 (938)
T ss_pred HHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcC--cccc
Confidence 44555556667889999999999999543 2233322 122345533 234557888888888888774 3444
Q ss_pred hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC-------------CCCcchHhHHH
Q 011328 197 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-------------HPSPSVLIPAL 263 (488)
Q Consensus 197 ~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-------------~~~~~v~~~a~ 263 (488)
...+....++.+|.+.+..+...+...+..++...++.....+- ..+..|..+.. -+.|.++...+
T Consensus 184 ~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~ 262 (938)
T KOG1077|consen 184 NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLL 262 (938)
T ss_pred ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHHH
Confidence 45678899999999999999999999999998776654332111 12222222221 14677888888
Q ss_pred HHHhHhhcCCchh-hHHHhhCCChHHHHHHhcccc------hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 011328 264 RTVGNIVTGDDMQ-TQCIINHQALPCLLDLLTQNY------KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 336 (488)
Q Consensus 264 ~~L~~l~~~~~~~-~~~~~~~~~~~~L~~lL~~~~------~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll 336 (488)
++|.++-...+.. +..+. .+++.++...+.+. ....+...++-..+++.+-+..-..+. ..+..|..++
T Consensus 263 rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fl 338 (938)
T KOG1077|consen 263 RLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFL 338 (938)
T ss_pred HHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHh
Confidence 8888874432222 22111 23333333333110 122334444445566553221112222 3677899999
Q ss_pred hcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccch
Q 011328 337 LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNL 415 (488)
Q Consensus 337 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~ 415 (488)
.+....+|--|+..++.++..+.. ...+.. -.+.++..|+ ..|..++..++..|..++..+.
T Consensus 339 s~rE~NiRYLaLEsm~~L~ss~~s--~davK~--h~d~Ii~sLkterDvSirrravDLLY~mcD~~N------------- 401 (938)
T KOG1077|consen 339 SHRETNIRYLALESMCKLASSEFS--IDAVKK--HQDTIINSLKTERDVSIRRRAVDLLYAMCDVSN------------- 401 (938)
T ss_pred hcccccchhhhHHHHHHHHhccch--HHHHHH--HHHHHHHHhccccchHHHHHHHHHHHHHhchhh-------------
Confidence 999999999999999999876422 222221 2778888888 7889999999999998887654
Q ss_pred HHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011328 416 FAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 416 ~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~ 454 (488)
...+. .+.++.|.....+-.+++..+++-+-++|-.+
T Consensus 402 -ak~IV-~elLqYL~tAd~sireeivlKvAILaEKyAtD 438 (938)
T KOG1077|consen 402 -AKQIV-AELLQYLETADYSIREEIVLKVAILAEKYATD 438 (938)
T ss_pred -HHHHH-HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCC
Confidence 22222 22344444444444566666666666666443
No 97
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.46 E-value=7.7e-05 Score=71.36 Aligned_cols=244 Identities=18% Similarity=0.061 Sum_probs=168.4
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011328 73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 152 (488)
Q Consensus 73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (488)
..++.++..|......+++..++.++...-. + ..+..|+..|.+.++.++..+..+|+.+-. +
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--~---- 116 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQED--A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG--R---- 116 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhccCC--h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--h----
Confidence 4677888888543337777766655532221 1 137899999999999999999999987631 1
Q ss_pred HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc
Q 011328 153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 232 (488)
Q Consensus 153 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~ 232 (488)
.....|+.++ .+.++.++..++.++.... ....+.+..++++.++.++..++.+++.+...
T Consensus 117 -----~a~~~L~~~L-~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-- 177 (410)
T TIGR02270 117 -----QAEPWLEPLL-AASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPRR-- 177 (410)
T ss_pred -----HHHHHHHHHh-cCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--
Confidence 2356778888 7788889988887776622 12456788889999999999999999987532
Q ss_pred hhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHH
Q 011328 233 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 312 (488)
Q Consensus 233 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl 312 (488)
..++.|...+.+.++.||..|+..++.+-. + .....+....... ....+..+...+...
T Consensus 178 ---------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~-g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 178 ---------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLE-GGPHRQRLLVLLAVA 236 (410)
T ss_pred ---------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhcc-CccHHHHHHHHHHhC
Confidence 345667777899999999999999977633 2 1234455544433 333333333333333
Q ss_pred hcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHH
Q 011328 313 TAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE 392 (488)
Q Consensus 313 ~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~ 392 (488)
+.+ ..++.|..+++++. ++..++++++.+-.. ..++.|+..++++. +...|-+
T Consensus 237 --~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p------------~av~~L~~~l~d~~--~aR~A~e 289 (410)
T TIGR02270 237 --GGP---------DAQAWLRELLQAAA--TRREALRAVGLVGDV------------EAAPWCLEAMREPP--WARLAGE 289 (410)
T ss_pred --Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcCCc------------chHHHHHHHhcCcH--HHHHHHH
Confidence 222 36777888888754 899999999988532 25778888887443 8888999
Q ss_pred HHHHHHHh
Q 011328 393 GLENILKA 400 (488)
Q Consensus 393 ~L~~l~~~ 400 (488)
++..|.-.
T Consensus 290 A~~~ItG~ 297 (410)
T TIGR02270 290 AFSLITGM 297 (410)
T ss_pred HHHHhhCC
Confidence 99888654
No 98
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=6.3e-06 Score=79.54 Aligned_cols=253 Identities=15% Similarity=0.143 Sum_probs=169.5
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC------CC
Q 011328 119 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK------PQ 192 (488)
Q Consensus 119 ~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~------~~ 192 (488)
.-+..+..+.+..+|..|+..|..|..... ..+. .....++++ .+.+..++..|+.+++-...-. ..
T Consensus 201 ~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k-L~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 201 RGLIYLEHDQDFRVRTHAVEGLLALSEGFK-LSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhccccc-ccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 337777777888888888888888876322 2222 234567777 7778889988866665544332 22
Q ss_pred CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC-CCCcchHhHHHHHHhHhhc
Q 011328 193 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVT 271 (488)
Q Consensus 193 ~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~ 271 (488)
........++..+...+++....|+..|..+|+.+-..+.+.+....+..++..+-..-. ++.+ ..+..=+..++
T Consensus 274 ~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrp----k~l~s~GewSs 349 (823)
T KOG2259|consen 274 EEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRP----KALYSSGEWSS 349 (823)
T ss_pred hhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccch----HHHHhcCCccc
Confidence 233344678888999999999999999999999988777666665555554442221110 1111 11111111121
Q ss_pred C-----------CchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC
Q 011328 272 G-----------DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE 340 (488)
Q Consensus 272 ~-----------~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~ 340 (488)
+ .++....++.+|.-..++.-|.++ -.+||..|+..++.|+..++.... ..+..|+.++++..
T Consensus 350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~ 423 (823)
T KOG2259|consen 350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEI 423 (823)
T ss_pred CccccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHH
Confidence 1 123345577888889999999998 899999999999999986555322 25778999999999
Q ss_pred hhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHH
Q 011328 341 FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE 395 (488)
Q Consensus 341 ~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~ 395 (488)
..||..|+.+|..++.+.. ++...++.+...|++..+++++.....|.
T Consensus 424 ~~VRL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe~l~elL~ 471 (823)
T KOG2259|consen 424 EVVRLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVREALRELLK 471 (823)
T ss_pred HHHHHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999999986531 12234666667777777777766555544
No 99
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.46 E-value=2.7e-05 Score=73.58 Aligned_cols=315 Identities=18% Similarity=0.175 Sum_probs=197.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchhhH
Q 011328 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
.+.+...+-+++.+++..+.++++.++.+ ....+.+.+.++--.++.-|..++ +..-|++|++.+..+.... +..+
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~-~~~~ 103 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIK-KGPK 103 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhc-CCcc
Confidence 34444445566699999999999998875 466777888777667777775543 3567899999998887732 2222
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC
Q 011328 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 190 (488)
Q Consensus 111 ~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~ 190 (488)
. +..|++..++.+.+++++.++..|+.+|+.++-.+|+ .+...|++..+++.+.+ ...++....+.++..+...+
T Consensus 104 ~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p 178 (371)
T PF14664_consen 104 E-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALID-GSFSISESLLDTLLYLLDSP 178 (371)
T ss_pred c-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHhCCc
Confidence 1 3557899999999999999999999999999988775 68889999999999954 44458888889999998887
Q ss_pred CCCChhhhhchHHHHHHhhcc-------CCh--hHHHHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHhcCCCCcchHh
Q 011328 191 PQPLFEQTRPALPALERLIHS-------NDD--EVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRHPSPSVLI 260 (488)
Q Consensus 191 ~~~~~~~~~~~~~~l~~ll~~-------~~~--~v~~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~v~~ 260 (488)
.........--+..++.-+.+ ++. +....+..++..+...=+.......+. .++..++..|..+.+++|.
T Consensus 179 ~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~ 258 (371)
T PF14664_consen 179 RTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRK 258 (371)
T ss_pred chhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHH
Confidence 555444332233333332221 122 344555555655554332222211111 5688899999999999999
Q ss_pred HHHHHHhHhhcCCch-hhHHHh------hCCChHHHHHHhc--ccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHcCChH
Q 011328 261 PALRTVGNIVTGDDM-QTQCII------NHQALPCLLDLLT--QNYKKSIKKEACWTISNITAGN-VNQIQAIIEAGIIG 330 (488)
Q Consensus 261 ~a~~~L~~l~~~~~~-~~~~~~------~~~~~~~L~~lL~--~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~ 330 (488)
..+..+..+..-... ...... ..+-...-.++-. .+ .......-..--.++..+. .-....+++.|+++
T Consensus 259 ~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e-~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~ 337 (371)
T PF14664_consen 259 AILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAE-AKSILPHRSSKRPNLVNHYLALLLAILIEAGLLE 337 (371)
T ss_pred HHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccc-cccccCccccccccHHHHHHHHHHHHHHHcChHH
Confidence 999998888764321 111111 1111100000000 00 0000000000011121110 11223456899999
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHHhc
Q 011328 331 PLVNLLLNA-EFEIKKEAAWAISNAT 355 (488)
Q Consensus 331 ~L~~ll~~~-~~~v~~~a~~aL~~l~ 355 (488)
.|+++..+. +..+..+|...|+.+.
T Consensus 338 ~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 338 ALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 999999998 8889999999888775
No 100
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.42 E-value=1.6e-05 Score=81.93 Aligned_cols=268 Identities=15% Similarity=0.144 Sum_probs=178.5
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCC---Cch
Q 011328 32 LPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG---TSE 107 (488)
Q Consensus 32 i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~---~~~ 107 (488)
++.+..++++ ...+.+..|+..|..+...-+ ++..-..++|.++.++.++. .+||..|+.+|..+... -+.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~----de~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYID----DEVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcc----hHHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCc
Confidence 4556666665 456778888888888765442 22333468999999999999 99999999998887651 222
Q ss_pred hhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhC------------------CCchh-----------HHHHHhc
Q 011328 108 NTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAG------------------DSPKC-----------RDLVLSN 157 (488)
Q Consensus 108 ~~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~------------------~~~~~-----------~~~~~~~ 157 (488)
.-..++..-++|.|-.++.+ ....+|-.-+..|+.|+. +.++. ...+.
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~-- 576 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH-- 576 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH--
Confidence 23334445678888888877 445566555566665542 11111 00010
Q ss_pred CChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHH
Q 011328 158 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA 237 (488)
Q Consensus 158 ~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~ 237 (488)
..++.++.-|..++++-|++..+..|.-||.... +.....-+++.|+.+|++.|+.+|..-...|.-++-.-..+
T Consensus 577 ~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG--k~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--- 651 (1431)
T KOG1240|consen 577 HTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFG--KEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--- 651 (1431)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh--hcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee---
Confidence 1233333222255566777777777777775421 11122346788999999999999988888887666432211
Q ss_pred HHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011328 238 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 314 (488)
Q Consensus 238 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 314 (488)
-++..++|.|.+.|.+.++.|...|+.++..|+...--....+. .+++....+|-++ +.-+|..++..|...+.
T Consensus 652 s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 652 SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence 23447789999999999999999999999999874332222222 4677788888999 99999999999988776
No 101
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.38 E-value=2e-05 Score=69.54 Aligned_cols=235 Identities=14% Similarity=0.166 Sum_probs=157.8
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC-CCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCchhHH
Q 011328 76 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH-GAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRD 152 (488)
Q Consensus 76 ~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~~L~~--~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (488)
+.|-++++.-+ +-.+.-|++++.++.. .++.|...... ..-..+...+++ +..+++-+.+.+++.++..+ .+.+
T Consensus 152 eyLgkl~Q~i~-~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~-~~aq 228 (432)
T COG5231 152 EYLGKLSQLID-FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSK-ECAQ 228 (432)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCH-HHHH
Confidence 33344555555 6678889999999998 78888877643 344566677766 67889999999999987554 3443
Q ss_pred HHHh-cCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCCh--hhhhc-hHHHHHHhhcc--CChhHHHHHHHHHHH
Q 011328 153 LVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF--EQTRP-ALPALERLIHS--NDDEVLTDACWALSY 226 (488)
Q Consensus 153 ~~~~-~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~-~~~~l~~ll~~--~~~~v~~~al~~L~~ 226 (488)
.+-. -..+.-++.+......+.+.+-++..+.+++...+.... ....+ +.+..--+... .|.+++...-..=..
T Consensus 229 di~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~ 308 (432)
T COG5231 229 DIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSR 308 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 3222 234666777776666788999999999999985433222 22233 44433333332 245544333222222
Q ss_pred hccCC----------------------c--------hhHHHHHHh--CCHHHHHHhcCCCCcc-hHhHHHHHHhHhhcCC
Q 011328 227 LSDGT----------------------N--------DKIQAVIEA--GVCPRLVELLRHPSPS-VLIPALRTVGNIVTGD 273 (488)
Q Consensus 227 l~~~~----------------------~--------~~~~~~~~~--~~l~~L~~lL~~~~~~-v~~~a~~~L~~l~~~~ 273 (488)
+..+. + ...+.+.+. .++..|.++++.+.+. ...-||.-++.+.+..
T Consensus 309 l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~ 388 (432)
T COG5231 309 LVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRAS 388 (432)
T ss_pred HHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhC
Confidence 21111 0 111223222 4788889999887766 5567888999999999
Q ss_pred chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011328 274 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 314 (488)
Q Consensus 274 ~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 314 (488)
|+....+.+.|+-+.++.++.++ +++||.+|+.++..+..
T Consensus 389 PE~~~vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 389 PEINAVLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCIS 428 (432)
T ss_pred chHHHHHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence 99999899999999999999999 99999999999887654
No 102
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.38 E-value=0.00028 Score=66.92 Aligned_cols=251 Identities=27% Similarity=0.321 Sum_probs=175.6
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
..++.+++.+.++++.++..+++.+..+-.. ..++.+.+++.+.+ +.+|..|+.+|+.+-.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~------ 103 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGD------ 103 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCC------
Confidence 4678899999999999999999997775432 37899999999999 8999999998887764
Q ss_pred HHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc-----------cHhHHH
Q 011328 110 RVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-----------KLSMLR 177 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-----------~~~v~~ 177 (488)
...++.++.++. +++..+|..+.++|+.+-.. ..+.+++..+.+.. ...++.
T Consensus 104 -----~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~ 167 (335)
T COG1413 104 -----PEAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRA 167 (335)
T ss_pred -----hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHH
Confidence 134788899888 59999999999999998422 12566777773322 013555
Q ss_pred HHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcc
Q 011328 178 NATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 257 (488)
Q Consensus 178 ~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~ 257 (488)
.+...+..+-.. ..++.+...+.+.+..++..+..+++.+.... ..+...+...+.+++..
T Consensus 168 ~a~~~l~~~~~~----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~ 228 (335)
T COG1413 168 AAAEALGELGDP----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLE 228 (335)
T ss_pred HHHHHHHHcCCh----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHH
Confidence 666666655433 46677888888888888888888888876554 24456777888888888
Q ss_pred hHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 011328 258 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 337 (488)
Q Consensus 258 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~ 337 (488)
++..++..++.+-.. .....+...+... +..++..+...+... ... .....+...+.
T Consensus 229 vr~~~~~~l~~~~~~-----------~~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~~---------~~~~~l~~~~~ 285 (335)
T COG1413 229 VRKAALLALGEIGDE-----------EAVDALAKALEDE-DVILALLAAAALGAL--DLA---------EAALPLLLLLI 285 (335)
T ss_pred HHHHHHHHhcccCcc-----------hhHHHHHHHHhcc-chHHHHHHHHHhccc--Cch---------hhHHHHHHHhh
Confidence 888888888776441 2345677777766 555555555444411 101 12344455556
Q ss_pred cCChhHHHHHHHHHHHhccC
Q 011328 338 NAEFEIKKEAAWAISNATSG 357 (488)
Q Consensus 338 ~~~~~v~~~a~~aL~~l~~~ 357 (488)
+.+..++..+..++......
T Consensus 286 ~~~~~~~~~~~~~l~~~~~~ 305 (335)
T COG1413 286 DEANAVRLEAALALGQIGQE 305 (335)
T ss_pred cchhhHHHHHHHHHHhhccc
Confidence 66677777777777777543
No 103
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.36 E-value=0.00016 Score=69.13 Aligned_cols=350 Identities=13% Similarity=0.109 Sum_probs=200.5
Q ss_pred CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCC---hhHHHHHHHHHHHhcCCCchhhHHHHhCCCH
Q 011328 42 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF---PQLQFEAAWALTNIASGTSENTRVVIDHGAV 118 (488)
Q Consensus 42 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 118 (488)
+++--|+.|+..|.++-.. +.+. .-.+++.+..+.+ .-......++...+...+++.+.++ .
T Consensus 202 ~~~isqYHalGlLyq~kr~------dkma----~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~-----r 266 (898)
T COG5240 202 GNPISQYHALGLLYQSKRT------DKMA----QLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQL-----R 266 (898)
T ss_pred CChHHHHHHHHHHHHHhcc------cHHH----HHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHH-----H
Confidence 3566777888777774322 1122 2234444443321 2223334455666666666666655 4
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhh
Q 011328 119 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 198 (488)
Q Consensus 119 ~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 198 (488)
|.|-..+++.-+-+.-.+++.++.++..+-. ..... ..+..|-.+| .++....+-.|...|..++...|.......
T Consensus 267 pfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~~-~~vs~L~~fL-~s~rv~~rFsA~Riln~lam~~P~kv~vcN 342 (898)
T COG5240 267 PFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFVD-QTVSSLRTFL-KSTRVVLRFSAMRILNQLAMKYPQKVSVCN 342 (898)
T ss_pred HHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHHH-HHHHHHHHHH-hcchHHHHHHHHHHHHHHHhhCCceeeecC
Confidence 6777788887788888888888888755421 11111 1344555555 677778889999999999988765544333
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhH
Q 011328 199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ 278 (488)
Q Consensus 199 ~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 278 (488)
+-+-.++.+.+..+..+|+.+|..- +.++.+..++ ..+...+.+-++..+.-+..++..++-..+....
T Consensus 343 ----~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrLv-----~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~ 411 (898)
T COG5240 343 ----KEVESLISDENRTISTYAITTLLKT--GTEETIDRLV-----NLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKL 411 (898)
T ss_pred ----hhHHHHhhcccccchHHHHHHHHHc--CchhhHHHHH-----HHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHH
Confidence 3345566777777777777666543 3333344333 3333444443334444445555555544443332
Q ss_pred HHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCC
Q 011328 279 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 358 (488)
Q Consensus 279 ~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 358 (488)
..+..|...|......+.++.+..++.......|+.... ++..|+..+.+... -+-+.+.|+-+-..+
T Consensus 412 -----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDcey--~~I~vrIL~iLG~Eg 479 (898)
T COG5240 412 -----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDCEY--HQITVRILGILGREG 479 (898)
T ss_pred -----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhcch--hHHHHHHHHHhcccC
Confidence 234556665544437788888888888888765554433 34557777766532 234455555554332
Q ss_pred CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCH
Q 011328 359 SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT 438 (488)
Q Consensus 359 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~ 438 (488)
...-.+ ...+..+.+-+--.+.-+|..|+.+|..+.-..+.. +........+.++.++.++
T Consensus 480 P~a~~P----~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~---------------~~~~sv~~~lkRclnD~Dd 540 (898)
T COG5240 480 PRAKTP----GKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV---------------VSPQSVENALKRCLNDQDD 540 (898)
T ss_pred CCCCCc----chHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc---------------ccHHHHHHHHHHHhhcccH
Confidence 110000 012444444444456678888888888774322211 1111123557788899999
Q ss_pred HHHHHHHHHHHHhc
Q 011328 439 EIYEKAVKILETYW 452 (488)
Q Consensus 439 ~v~~~a~~~l~~~~ 452 (488)
+|+++|...++.+-
T Consensus 541 eVRdrAsf~l~~~~ 554 (898)
T COG5240 541 EVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999998888764
No 104
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.34 E-value=0.0015 Score=63.61 Aligned_cols=350 Identities=15% Similarity=0.139 Sum_probs=201.0
Q ss_pred HHHHHHHhcCCCH---HHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328 32 LPAMVAGVWSDDR---NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 32 i~~l~~~L~s~~~---~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
+|.++..|.+.+. ......+.+|.+++... +....+.. .++..+-...+...+.+....++.++..+.....+.
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~--~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~ 77 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTSP--QILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQED 77 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCCh--hHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccc
Confidence 3678888876544 55667888888876532 33333322 455555555554444667777788888876633222
Q ss_pred h-----HHHHhCCCHHHHHHhhCC-----C--CHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc--------
Q 011328 109 T-----RVVIDHGAVPIFVRLLSS-----P--TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-------- 168 (488)
Q Consensus 109 ~-----~~~~~~g~i~~L~~~L~~-----~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-------- 168 (488)
. ....+..+++.+.+.... . ++.+...+..++..+++.-+.-+..- .+..+..+..
T Consensus 78 ~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~----~~~~~~~lf~~~~~~~~~ 153 (415)
T PF12460_consen 78 KQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE----ILDELYSLFLSPKSFSPF 153 (415)
T ss_pred cccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH----HHHHHHHHHccccccCCC
Confidence 2 233344477777776532 2 25666666666666665443222211 1333333331
Q ss_pred --ccc-cHhHHHHHHHHHHH-hhcCCCCCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCC--chhHHHHHHh
Q 011328 169 --EHA-KLSMLRNATWTLSN-FCRGKPQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGT--NDKIQAVIEA 241 (488)
Q Consensus 169 --~~~-~~~v~~~a~~~L~~-l~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~v~~~al~~L~~l~~~~--~~~~~~~~~~ 241 (488)
... ...........+.. ++.-++..........+..++.+..+ .++..+..++.+++.++..- ++..+
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~----- 228 (415)
T PF12460_consen 154 QPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD----- 228 (415)
T ss_pred CccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH-----
Confidence 000 00111222222222 22222222222444577777777654 46888899999999888552 22222
Q ss_pred CCHHHHHHhc-CCCCcchHhHHHHHH----hHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC
Q 011328 242 GVCPRLVELL-RHPSPSVLIPALRTV----GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 316 (488)
Q Consensus 242 ~~l~~L~~lL-~~~~~~v~~~a~~~L----~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 316 (488)
+++..+..-. ....+..+..++.++ ..+...+..... ..+..++.++.+ +++...++..+.-+....
T Consensus 229 ~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~ 300 (415)
T PF12460_consen 229 EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS---PELGQQAAKAFGILLSDS 300 (415)
T ss_pred HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC---hhhHHHHHHHHhhHhcCc
Confidence 3333343333 233344444444444 333332332222 356678888876 456778888888777652
Q ss_pred HH--------HHHHHHHc----CChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCH
Q 011328 317 VN--------QIQAIIEA----GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 384 (488)
Q Consensus 317 ~~--------~~~~l~~~----~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 384 (488)
++ .++.+.+. .++|.|++-....+...|...+.||.++..+-.......=. ..+++.|.+.|+.++.
T Consensus 301 ~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l-~~LlPLLlqsL~~~~~ 379 (415)
T PF12460_consen 301 DDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPEL-PTLLPLLLQSLSLPDA 379 (415)
T ss_pred HHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHH-HHHHHHHHHHhCCCCH
Confidence 22 22333332 36788888888777779999999999999876544322211 2589999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 011328 385 RIVTVCLEGLENILKAGE 402 (488)
Q Consensus 385 ~v~~~al~~L~~l~~~~~ 402 (488)
+++..++.+|..++...+
T Consensus 380 ~v~~s~L~tL~~~l~~~~ 397 (415)
T PF12460_consen 380 DVLLSSLETLKMILEEAP 397 (415)
T ss_pred HHHHHHHHHHHHHHHcCH
Confidence 999999999999987664
No 105
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.33 E-value=0.00036 Score=71.20 Aligned_cols=384 Identities=16% Similarity=0.143 Sum_probs=230.8
Q ss_pred HHHHHhcCCC-HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHH
Q 011328 34 AMVAGVWSDD-RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 112 (488)
Q Consensus 34 ~l~~~L~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 112 (488)
.++..+..++ .+-+..++..+....... ....++....+..-++.++.. +.++..++.-+++++..-+. ..
T Consensus 201 ~l~~~l~~~d~~~sr~sacglf~~~~~~~----~~~~vk~elr~~~~~lc~d~~-~~Vr~~~a~~l~~~a~~~~~---~~ 272 (759)
T KOG0211|consen 201 PLLKRLATGDWFQSRLSACGLFGKLYVSL----PDDAVKRELRPIVQSLCQDDT-PMVRRAVASNLGNIAKVLES---EI 272 (759)
T ss_pred HHHHHccchhhhhcchhhhhhhHHhccCC----ChHHHHHHHHHHHHhhccccc-hhhHHHHHhhhHHHHHHHHH---HH
Confidence 3444444332 233445555555544332 113344455566666777777 89999999999999873333 56
Q ss_pred HhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC-C
Q 011328 113 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-P 191 (488)
Q Consensus 113 ~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~-~ 191 (488)
...++++.+..+..++...+|..|...+.++...-..-. -......+.+++.. .+.+..++.......+.+...- +
T Consensus 273 ~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~~-~d~~~~v~~~~~~~~~~L~~~~~~ 349 (759)
T KOG0211|consen 273 VKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--DVVKSLTESLVQAV-EDGSWRVSYMVADKFSELSSAVGP 349 (759)
T ss_pred HHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHh-cChhHHHHHHHhhhhhhHHHHhcc
Confidence 677889999999999999999999998888763221100 11122344555555 4444444443333333332211 0
Q ss_pred --------------------------------------CC--ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011328 192 --------------------------------------QP--LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 231 (488)
Q Consensus 192 --------------------------------------~~--~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 231 (488)
.. .......++|.+-.+..+.+..++...+..+..+....
T Consensus 350 ~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~ 429 (759)
T KOG0211|consen 350 SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPIL 429 (759)
T ss_pred ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccC
Confidence 00 00111233445555555555555555555555544322
Q ss_pred chhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011328 232 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 311 (488)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n 311 (488)
+. ...+ ....+.+...+++..+.++....+.+..+-..++...........++.+..+-... .++++.+..+.+-.
T Consensus 430 ~k--~~ti-~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~ 505 (759)
T KOG0211|consen 430 PK--ERTI-SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQ 505 (759)
T ss_pred Cc--CcCc-cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHH
Confidence 20 0011 13456666677777888888887776665554444444444556777777777777 78899999988888
Q ss_pred HhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHH
Q 011328 312 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCL 391 (488)
Q Consensus 312 l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al 391 (488)
++.... ..+.....-+.+...+.+....+++.|+..+..++..-+.+... ...++.+.....+++...|...+
T Consensus 506 la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~----~~~i~k~L~~~~q~~y~~R~t~l 578 (759)
T KOG0211|consen 506 LALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWAR----LEEIPKLLAMDLQDNYLVRMTTL 578 (759)
T ss_pred HHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhH----HHhhHHHHHHhcCcccchhhHHH
Confidence 876322 22333334445555566667889999999999888644322211 13466777777766788888888
Q ss_pred HHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011328 392 EGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 392 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~ 454 (488)
.++..+....... +-....+..+.++.+++.++|+-.+++.+..+...
T Consensus 579 ~si~~la~v~g~e---------------i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~ 626 (759)
T KOG0211|consen 579 FSIHELAEVLGQE---------------ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKL 626 (759)
T ss_pred HHHHHHHHHhccH---------------HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhh
Confidence 8888776654322 22233467788899999999999999888776654
No 106
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.26 E-value=5.3e-05 Score=78.19 Aligned_cols=295 Identities=15% Similarity=0.130 Sum_probs=190.8
Q ss_pred CHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC----C
Q 011328 117 AVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK----P 191 (488)
Q Consensus 117 ~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~----~ 191 (488)
+++.+...+++ ...+.+..|+..|..++..... +.. -..+++.++.++ .++...|+..|+.+|..+...- +
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d--e~~-LDRVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD--EVK-LDRVLPYFVHLL-MDSEADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch--HHH-HhhhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCCCc
Confidence 34556666665 6678888999999998865432 111 124788888888 8888999999999998776533 3
Q ss_pred CCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhh
Q 011328 192 QPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 270 (488)
Q Consensus 192 ~~~~~~~~~~~~~l~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~ 270 (488)
........-++|.|..++.+ ....++..-+.+|..++.... .+.+...-.....+++.++.+. . --
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~----rFle~~q~~~~~g~~n~~nset-------~--~~ 565 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY----RFLELTQELRQAGMLNDPNSET-------A--PE 565 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH----HHHHHHHHHHhcccccCccccc-------c--cc
Confidence 44455667788999999887 566777777778887764321 1222111111222234433330 0 00
Q ss_pred cCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc--CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHH
Q 011328 271 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA 348 (488)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 348 (488)
.......+.+.+ .+-+....++.++ .+-||+..+..|.-|+. +... -+.-+++.|+..|++.|+.+|..-.
T Consensus 566 ~~~~~~~~~L~~-~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFGk~k-----sND~iLshLiTfLNDkDw~LR~aFf 638 (1431)
T KOG1240|consen 566 QNYNTELQALHH-TVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFGKEK-----SNDVILSHLITFLNDKDWRLRGAFF 638 (1431)
T ss_pred cccchHHHHHHH-HHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhhhcc-----cccchHHHHHHHhcCccHHHHHHHH
Confidence 111122222222 4556677788777 78899888888887775 2111 0123688999999999999998777
Q ss_pred HHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHH
Q 011328 349 WAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK 428 (488)
Q Consensus 349 ~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 428 (488)
..+.-++..-.... .+...++.|.+-|.++++.|+..|+.++..+++.+--.+. .. ...++.
T Consensus 639 dsI~gvsi~VG~rs----~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~------------~v--~~i~~~ 700 (1431)
T KOG1240|consen 639 DSIVGVSIFVGWRS----VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP------------AV--KDILQD 700 (1431)
T ss_pred hhccceEEEEeeee----HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH------------HH--HHHHHh
Confidence 77765553222211 2335789999999999999999999999999988653221 11 112445
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhcC
Q 011328 429 IENLQSHDNTEIYEKAVKILETYWV 453 (488)
Q Consensus 429 L~~l~~~~~~~v~~~a~~~l~~~~~ 453 (488)
..-++-++|.=|++.+..++-...+
T Consensus 701 v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 701 VLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred hhhheeCchHHHHHHHHHHHHHHHh
Confidence 5667889999999998888755443
No 107
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.00062 Score=72.35 Aligned_cols=316 Identities=17% Similarity=0.139 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHH
Q 011328 44 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR 123 (488)
Q Consensus 44 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 123 (488)
..-+.-|+.-+..+++.........+ ...+|.|.+.=-+++ ..+|.....+...+..++....+...+ .++.-|+.
T Consensus 971 wnSk~GaAfGf~~i~~~a~~kl~p~l--~kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~ 1046 (1702)
T KOG0915|consen 971 WNSKKGAAFGFGAIAKQAGEKLEPYL--KKLIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLV 1046 (1702)
T ss_pred hhcccchhhchHHHHHHHHHhhhhHH--HHhhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHH
Confidence 44455567777777665422212211 247788888877888 899998888888888755555554443 56788888
Q ss_pred hhCCCCHHHHHHHHHHHhhhhCCCchh--HHHHHhcCChHHHHHHhcccccHhHHHH---HHHHHHHhhcCC-----CCC
Q 011328 124 LLSSPTDDVREQAVWALGNVAGDSPKC--RDLVLSNGALMPLLAQFNEHAKLSMLRN---ATWTLSNFCRGK-----PQP 193 (488)
Q Consensus 124 ~L~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~~~l~~L~~ll~~~~~~~v~~~---a~~~L~~l~~~~-----~~~ 193 (488)
-+.+....+|+.++.+|..|..+.+.- .+.+. .....+++.+ ++-.+.+|.. ++.+|+.+|-.. +..
T Consensus 1047 ~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~ 1123 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAK 1123 (1702)
T ss_pred hccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCccc
Confidence 888889999999999999999876532 12222 2344444444 4555666654 455555555332 222
Q ss_pred ChhhhhchHHHHHH-hhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHh-HHHHH------
Q 011328 194 LFEQTRPALPALER-LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI-PALRT------ 265 (488)
Q Consensus 194 ~~~~~~~~~~~l~~-ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~-~a~~~------ 265 (488)
.......++|.++. .+-+.-.+++.-++.++..++...+....... ..+++.|+.....-++.+.. .++++
T Consensus 1124 ~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~e 1202 (1702)
T KOG0915|consen 1124 GKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHF-PKLIPLLLNAYSELEPQVLNYLSLRLINIETE 1202 (1702)
T ss_pred HHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchh-hHHHHHHHHHccccchHHHHHHHHhhhhhHHH
Confidence 22333445555442 12255689999999999999987765444222 25667777766655444332 22222
Q ss_pred ----HhH-hhcCCch--hhHHHh-------hCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Q 011328 266 ----VGN-IVTGDDM--QTQCII-------NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP 331 (488)
Q Consensus 266 ----L~~-l~~~~~~--~~~~~~-------~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~ 331 (488)
+.. .+.+++. ....++ -...+|.+.++++++..-..|..++..+.-++..-........ -..+..
T Consensus 1203 alDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s-gKll~a 1281 (1702)
T KOG0915|consen 1203 ALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS-GKLLRA 1281 (1702)
T ss_pred HHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch-hHHHHH
Confidence 111 1111110 000000 1134555555555544444555555555555432111011111 124556
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHH
Q 011328 332 LVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS 368 (488)
Q Consensus 332 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~ 368 (488)
++..+++.++.+++..+.|.+.++....+++...+++
T Consensus 1282 l~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie 1318 (1702)
T KOG0915|consen 1282 LFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIE 1318 (1702)
T ss_pred HhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 6666677789999999999999999888877777654
No 108
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.23 E-value=0.00086 Score=63.65 Aligned_cols=215 Identities=25% Similarity=0.348 Sum_probs=151.8
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011328 73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 152 (488)
Q Consensus 73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (488)
..++.+.+++.+.+ ..+|..+.+.++.+.. ...++.+..++.+.++.+|..+..+|+.+- .+
T Consensus 43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~---- 104 (335)
T COG1413 43 EAADELLKLLEDED-LLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--DP---- 104 (335)
T ss_pred hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--Ch----
Confidence 46888999999997 8999999999776654 235899999999999999999999888873 22
Q ss_pred HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCCh------------hHHHHH
Q 011328 153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD------------EVLTDA 220 (488)
Q Consensus 153 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~------------~v~~~a 220 (488)
..++.++..+..+.+..++..+.++|..+-... .+..++..+.+... .++..+
T Consensus 105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 257788888855788999999999999876542 36667777766542 234444
Q ss_pred HHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhh
Q 011328 221 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS 300 (488)
Q Consensus 221 l~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~ 300 (488)
...++.+.. ...++.+...+.+....+|..+..+|+.+...+ ..+.+.+...+.+. +..
T Consensus 170 ~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~ 228 (335)
T COG1413 170 AEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE 228 (335)
T ss_pred HHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence 444443321 134566777777777778888888888777644 23456677777777 778
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHH
Q 011328 301 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 352 (488)
Q Consensus 301 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~ 352 (488)
+|..++.+++.+-.. + .+..+...+...+..++..+..++.
T Consensus 229 vr~~~~~~l~~~~~~--~---------~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 229 VRKAALLALGEIGDE--E---------AVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred HHHHHHHHhcccCcc--h---------hHHHHHHHHhccchHHHHHHHHHhc
Confidence 888888777766432 1 3555666677766666665555554
No 109
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.22 E-value=1.2e-05 Score=61.71 Aligned_cols=135 Identities=13% Similarity=0.105 Sum_probs=112.8
Q ss_pred CChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHH
Q 011328 158 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA 237 (488)
Q Consensus 158 ~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~ 237 (488)
+.+..|+.-....++.+.++.+..-|.|++.++.+........++...+..+..+|..+.+.++..|+|+|.... ..+.
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~~~ 94 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NAKF 94 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HHHH
Confidence 356777777767788999999999999999988777778888999999999999999999999999999998764 4577
Q ss_pred HHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHh
Q 011328 238 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL 293 (488)
Q Consensus 238 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL 293 (488)
+.+.++++.++..+.++...+...++.++..++.+....+..+....++..+.+.-
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~ 150 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWR 150 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHH
Confidence 99999999999999999888999999999999988777776666544544444443
No 110
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.20 E-value=0.00015 Score=69.24 Aligned_cols=288 Identities=15% Similarity=0.104 Sum_probs=166.3
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHH
Q 011328 75 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV 154 (488)
Q Consensus 75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 154 (488)
.|.|-..|++.- +.+...+++.+..++..+ ....+++ ..+..|-.+|++.....|-.|+++|..++...|.. ..
T Consensus 266 rpfL~~wls~k~-emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k--v~ 339 (898)
T COG5240 266 RPFLNSWLSDKF-EMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK--VS 339 (898)
T ss_pred HHHHHHHhcCcc-hhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce--ee
Confidence 345555566665 789999999999988733 1222222 24678888999999999999999999999776642 11
Q ss_pred HhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchh
Q 011328 155 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK 234 (488)
Q Consensus 155 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~ 234 (488)
.- -+.+-.++ .+.+..+- .+++..|...............++.+++=+.++-..+...+++.|+... +..
T Consensus 340 vc---N~evEsLI-sd~Nr~Is---tyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~F---p~k 409 (898)
T COG5240 340 VC---NKEVESLI-SDENRTIS---TYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLF---PSK 409 (898)
T ss_pred ec---ChhHHHHh-hcccccch---HHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhC---cHH
Confidence 11 11122222 44444443 3444444444333333333334444444444444445555555555543 222
Q ss_pred HHHHHHhCCHHHHHHhc-CCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHh
Q 011328 235 IQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 313 (488)
Q Consensus 235 ~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~ 313 (488)
.. ..+..|...| +.+.-+.+..+..++..+....++..+ .++..|...+.+.+-+ +-++++|+-|.
T Consensus 410 ~~-----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDcey~---~I~vrIL~iLG 476 (898)
T COG5240 410 KL-----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCEYH---QITVRILGILG 476 (898)
T ss_pred HH-----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcchh---HHHHHHHHHhc
Confidence 22 2234444444 335567788888888888776655443 3455677777655333 34555555555
Q ss_pred cCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHH
Q 011328 314 AGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEG 393 (488)
Q Consensus 314 ~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~ 393 (488)
...|.... -...+..+..-+--.+.-+|..|..||..++.+.+..... ..+...|.+++++.|.++|..|..+
T Consensus 477 ~EgP~a~~---P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~----~sv~~~lkRclnD~DdeVRdrAsf~ 549 (898)
T COG5240 477 REGPRAKT---PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSP----QSVENALKRCLNDQDDEVRDRASFL 549 (898)
T ss_pred ccCCCCCC---cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccH----HHHHHHHHHHhhcccHHHHHHHHHH
Confidence 42111000 0012333333333345679999999999988766433222 2356677889999999999999988
Q ss_pred HHHHH
Q 011328 394 LENIL 398 (488)
Q Consensus 394 L~~l~ 398 (488)
+.++=
T Consensus 550 l~~~~ 554 (898)
T COG5240 550 LRNMR 554 (898)
T ss_pred HHhhh
Confidence 88774
No 111
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.19 E-value=0.0002 Score=63.52 Aligned_cols=237 Identities=17% Similarity=0.156 Sum_probs=148.8
Q ss_pred HHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC--CCcchHhHHHHHHhHhhcCCchhhHHHh-
Q 011328 205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCII- 281 (488)
Q Consensus 205 l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~- 281 (488)
+-++++.-++-.+.-|.+++.++......+.....+...-..++.++++ +..+++..++.+++.++.. +...+.+-
T Consensus 154 Lgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K 232 (432)
T COG5231 154 LGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDK 232 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHH
Confidence 3344444456677888899998887665444434444455677777766 4568899999999999873 33332221
Q ss_pred hCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHH-HcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccC
Q 011328 282 NHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAII-EAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSG 357 (488)
Q Consensus 282 ~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~-~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~ 357 (488)
-...+..++.+.+..-..+|-+-++.++.|++.. ....+..+. ..++.+..-.+...+ |.+++...-..=..+..+
T Consensus 233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~ 312 (432)
T COG5231 233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQN 312 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Confidence 1235666777776654677888899999999883 334444443 444555555555443 555543322222222111
Q ss_pred C-------------------------C----HHHHHHHHHC--CChHHHHhhcCCCCHH-HHHHHHHHHHHHHHhhhhhh
Q 011328 358 G-------------------------S----NEQIKFLVSQ--GCIKPLCDLLNCPDPR-IVTVCLEGLENILKAGEAEK 405 (488)
Q Consensus 358 ~-------------------------~----~~~~~~l~~~--~~i~~L~~ll~~~~~~-v~~~al~~L~~l~~~~~~~~ 405 (488)
. + ..+...+.+. ..+..|..+++..++. ....|+.-+..+++..+.
T Consensus 313 ~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE-- 390 (432)
T COG5231 313 TKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE-- 390 (432)
T ss_pred hhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch--
Confidence 0 0 0112222222 2366677777766555 445667677777766654
Q ss_pred ccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011328 406 NMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 406 ~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~ 454 (488)
....+..-|+-+.+.+|++|++++|+-.|...+..+...
T Consensus 391 ----------~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 391 ----------INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS 429 (432)
T ss_pred ----------HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence 377889999999999999999999999999988776543
No 112
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=0.00011 Score=72.11 Aligned_cols=240 Identities=17% Similarity=0.206 Sum_probs=140.7
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHH
Q 011328 74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 153 (488)
Q Consensus 74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (488)
....|.+.|++.+++.++..++..|+-...++.. ..+.+.+-..|..++.-.-+.|...++-+.-++.. .+
T Consensus 414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~-------~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~-~e- 484 (929)
T KOG2062|consen 414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSAN-------EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN-QE- 484 (929)
T ss_pred HHHHHHHHHHhccchhhhhhhhhhccchhccccc-------HHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc-HH-
Confidence 4455555565555455666665555444432211 11234455555555555555555555554433321 11
Q ss_pred HHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCch
Q 011328 154 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 233 (488)
Q Consensus 154 ~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~ 233 (488)
++..+...-.....+.+.+-..--++-...+. ...+=+.+-+++.+.|+-+|...+.++..--.....
T Consensus 485 -----aiedm~~Ya~ETQHeki~RGl~vGiaL~~ygr-------qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn 552 (929)
T KOG2062|consen 485 -----AIEDMLTYAQETQHEKIIRGLAVGIALVVYGR-------QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN 552 (929)
T ss_pred -----HHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhh-------hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc
Confidence 23334444433334444443333232222221 124556677788888888888776665432212111
Q ss_pred hHHHHHHhCCHHHHHHh-cCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHH
Q 011328 234 KIQAVIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 312 (488)
Q Consensus 234 ~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl 312 (488)
.+.+..|+.. ..+.+.+||+.|.-+|+-++...++ ..+..+.+|...+++.||..++.+|+-.
T Consensus 553 -------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~ALGIa 616 (929)
T KOG2062|consen 553 -------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMALGIA 616 (929)
T ss_pred -------hhhHHHhhcccccccchHHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHHHhhh
Confidence 1556677776 5678899999999999999886663 3567888888887999999999999988
Q ss_pred hcC--CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCC
Q 011328 313 TAG--NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 359 (488)
Q Consensus 313 ~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 359 (488)
|.+ ..+ .+..|-.+..++..-||+-|+-+++-+....+
T Consensus 617 CAGtG~~e---------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 617 CAGTGLKE---------AINLLEPLTSDPVDFVRQGALIALAMIMIQQT 656 (929)
T ss_pred hcCCCcHH---------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence 874 233 23333344556667799999999888875543
No 113
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.16 E-value=0.0017 Score=65.90 Aligned_cols=140 Identities=16% Similarity=0.138 Sum_probs=100.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHH
Q 011328 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 111 (488)
Q Consensus 32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 111 (488)
+|.+++...+.|.+++...-..|...+... + +..+ -.++.+.+=+++++ +.+|..|++.++.+=. ++...
T Consensus 57 f~dViK~~~trd~ElKrL~ylYl~~yak~~-P---~~~l--LavNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~~- 126 (757)
T COG5096 57 FPDVIKNVATRDVELKRLLYLYLERYAKLK-P---ELAL--LAVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELLG- 126 (757)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhccC-H---HHHH--HHHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHHH-
Confidence 344455555555555555555555555443 1 1111 14667777888999 9999999999987754 23222
Q ss_pred HHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328 112 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 112 ~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
.+++.+.+++.++++.+|..|+.++..+-+-++ +.+.+.|.+..+..++ .++++.+..+|+.+|..+...
T Consensus 127 ----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 127 ----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence 357899999999999999999999999986654 3566666777677777 889999999999999988765
No 114
>PF05536 Neurochondrin: Neurochondrin
Probab=98.12 E-value=0.00018 Score=71.79 Aligned_cols=237 Identities=16% Similarity=0.140 Sum_probs=165.5
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh---hHHHHhCCCHHHHHHhhCC-------CCHHHHHHHHHHHhhh
Q 011328 74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN---TRVVIDHGAVPIFVRLLSS-------PTDDVREQAVWALGNV 143 (488)
Q Consensus 74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~g~i~~L~~~L~~-------~~~~v~~~a~~~L~~l 143 (488)
.++..+++|+..+ ++-|..++..+.++...++.. ++.+.+.=+.+.+-++|++ +....+..++.+|+.+
T Consensus 6 ~l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 6 SLEKCLSLLKSAD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHhccCC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4566778899888 788999999999999865532 3346676568888999987 4577889999999999
Q ss_pred hCCCchh-HHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHH
Q 011328 144 AGDSPKC-RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACW 222 (488)
Q Consensus 144 ~~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~ 222 (488)
|.++.-. ...+. +.++.+++.+.++++..+...++.+|..++............+.++.+.+.+.+ .+...+.++.
T Consensus 85 ~~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~ 161 (543)
T PF05536_consen 85 CRDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALN 161 (543)
T ss_pred cCChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHH
Confidence 9854321 12222 368899999955555589999999999999777777888889999999999987 5667888888
Q ss_pred HHHHhccCCchhH-H--HHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh-hHHH----hhCCChHHHHHHhc
Q 011328 223 ALSYLSDGTNDKI-Q--AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-TQCI----INHQALPCLLDLLT 294 (488)
Q Consensus 223 ~L~~l~~~~~~~~-~--~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~----~~~~~~~~L~~lL~ 294 (488)
++.+++....... . .-.-..+++.+...+.......+...+..|..+....+.. .... ....+...+..+++
T Consensus 162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~ 241 (543)
T PF05536_consen 162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQ 241 (543)
T ss_pred HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHh
Confidence 8888775433110 0 0000134455555565556667888899998888765321 1111 12245566667777
Q ss_pred ccchhhHHHHHHHHHHHHhc
Q 011328 295 QNYKKSIKKEACWTISNITA 314 (488)
Q Consensus 295 ~~~~~~v~~~a~~~L~nl~~ 314 (488)
+...+.-|..++.....+..
T Consensus 242 sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 242 SRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 76567777777777666654
No 115
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.11 E-value=6.5e-06 Score=50.65 Aligned_cols=41 Identities=44% Similarity=0.890 Sum_probs=38.2
Q ss_pred CchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhC
Q 011328 105 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 145 (488)
Q Consensus 105 ~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~ 145 (488)
+++++..+++.|+++.|+++|+++++++++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999999999973
No 116
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.10 E-value=0.00086 Score=65.57 Aligned_cols=255 Identities=16% Similarity=0.139 Sum_probs=165.3
Q ss_pred CccHHHHHHcCCHHHHHHhh---------cCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCC-----
Q 011328 63 SPPINEVIQSGVVPRFIEFL---------SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP----- 128 (488)
Q Consensus 63 ~~~~~~~~~~~~i~~L~~lL---------~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~----- 128 (488)
......+....++..|.++- ....++.+...|++||+|+...++..|..+.+.|..+.++..|+..
T Consensus 12 ~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~ 91 (446)
T PF10165_consen 12 PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQ 91 (446)
T ss_pred cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCC
Confidence 34455555555666666554 2233389999999999999999999999999999999999999875
Q ss_pred CHHHHHHHHHHHhhhhCCCchhHHHHHhc-CChHHHHHHhccc----------------ccHhHHHHHHHHHHHhhcCCC
Q 011328 129 TDDVREQAVWALGNVAGDSPKCRDLVLSN-GALMPLLAQFNEH----------------AKLSMLRNATWTLSNFCRGKP 191 (488)
Q Consensus 129 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~~----------------~~~~v~~~a~~~L~~l~~~~~ 191 (488)
+.++.-..+++|.-++...+..+..+.+. +++..++..+... .+......++..+.|++...+
T Consensus 92 ~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~ 171 (446)
T PF10165_consen 92 PSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYP 171 (446)
T ss_pred ChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccC
Confidence 78888889998888887777666655554 6666666655210 134556788888899887764
Q ss_pred CCChhhhh----chHHHHHHhh---c--cCChhHHHHHHHHHHHhccCCchh-----------HHHHHHhCCHHHHHHhc
Q 011328 192 QPLFEQTR----PALPALERLI---H--SNDDEVLTDACWALSYLSDGTNDK-----------IQAVIEAGVCPRLVELL 251 (488)
Q Consensus 192 ~~~~~~~~----~~~~~l~~ll---~--~~~~~v~~~al~~L~~l~~~~~~~-----------~~~~~~~~~l~~L~~lL 251 (488)
........ .++..+..++ . .+.......++.+|.++--..... .........+..|+.+|
T Consensus 172 ~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~L 251 (446)
T PF10165_consen 172 KSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFL 251 (446)
T ss_pred cccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHH
Confidence 43332333 3444444442 1 123566777888888773211100 00011123455566665
Q ss_pred CC-----C---CcchHhHHHHHHhHhhcCCchhhHHHh----------------hCCChHHHHHHhcccchhhHHHHHHH
Q 011328 252 RH-----P---SPSVLIPALRTVGNIVTGDDMQTQCII----------------NHQALPCLLDLLTQNYKKSIKKEACW 307 (488)
Q Consensus 252 ~~-----~---~~~v~~~a~~~L~~l~~~~~~~~~~~~----------------~~~~~~~L~~lL~~~~~~~v~~~a~~ 307 (488)
.. . -.+.....+.+|..++......++.+. ...+-..|++++.++ .+.+|..+..
T Consensus 252 d~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vae 330 (446)
T PF10165_consen 252 DKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAE 330 (446)
T ss_pred HHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHH
Confidence 32 1 124566678888888876544433332 234677899999999 5999999999
Q ss_pred HHHHHhcCCHH
Q 011328 308 TISNITAGNVN 318 (488)
Q Consensus 308 ~L~nl~~~~~~ 318 (488)
.+..+|..+..
T Consensus 331 llf~Lc~~d~~ 341 (446)
T PF10165_consen 331 LLFVLCKEDAS 341 (446)
T ss_pred HHHHHHhhhHH
Confidence 99888765443
No 117
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.09 E-value=6.8e-06 Score=50.56 Aligned_cols=41 Identities=46% Similarity=0.690 Sum_probs=38.1
Q ss_pred CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011328 316 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 316 ~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
++++++.+++.|++|.|++++.+++.++++.|+|+|+|++.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999973
No 118
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.08 E-value=7.3e-05 Score=66.60 Aligned_cols=187 Identities=17% Similarity=0.229 Sum_probs=118.7
Q ss_pred CCCCcchHhHHHHHHhHhhcCC--chhhHHHhh--CCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 011328 252 RHPSPSVLIPALRTVGNIVTGD--DMQTQCIIN--HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 327 (488)
Q Consensus 252 ~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~--~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 327 (488)
.+.+++.|..++.-|..++.++ ......+.+ ..++..+...+.+. ...+...|+.++..++...........+ .
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD-I 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-H
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH-H
Confidence 5578899999999999998866 222222221 14556777777777 7889999999999998743333444444 4
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhcc
Q 011328 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNM 407 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~ 407 (488)
++|.|+..+.++...++..|..+|..++.... ....+ ....+....++.++.++..++..+..++.........
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 78999999999988999999999999998764 11111 1567777889999999999999999998765511110
Q ss_pred CCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011328 408 GNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 408 ~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~ 454 (488)
+.....-....+.+..+.++.+++||+.|..++..|+.-
T Consensus 169 --------l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 169 --------LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp --------G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred --------hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 011000123467788999999999999999999887654
No 119
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.03 E-value=0.00054 Score=64.19 Aligned_cols=355 Identities=14% Similarity=0.110 Sum_probs=179.9
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC---chhhHHHH----
Q 011328 41 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT---SENTRVVI---- 113 (488)
Q Consensus 41 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~---- 113 (488)
...+.+..+.+++|.++.+..+.+..+.-.-..++..+..++++.+ +.++..++..++.+...+ |+....+-
T Consensus 118 e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d-~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s 196 (728)
T KOG4535|consen 118 ESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKD-VNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCS 196 (728)
T ss_pred hcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCC-CChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCc
Confidence 4567788899999999998764444443334556677778888999 899999999998887522 23222220
Q ss_pred -------------------hCC------------------CHH-----------------HHHHhhCC--CCHHHHHHHH
Q 011328 114 -------------------DHG------------------AVP-----------------IFVRLLSS--PTDDVREQAV 137 (488)
Q Consensus 114 -------------------~~g------------------~i~-----------------~L~~~L~~--~~~~v~~~a~ 137 (488)
... ++. ...+.+.+ ....+|-.|+
T Consensus 197 ~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~ 276 (728)
T KOG4535|consen 197 SSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEAL 276 (728)
T ss_pred cccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHH
Confidence 000 000 00000000 1122333444
Q ss_pred HHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC-----CCCChhhh-hchHHHHH-----
Q 011328 138 WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-----PQPLFEQT-RPALPALE----- 206 (488)
Q Consensus 138 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~-----~~~~~~~~-~~~~~~l~----- 206 (488)
.+|..++.+-.-.+...++ +...+..-..+.++.++..+..++..+...- |....... .+.+-.+.
T Consensus 277 qvl~~~a~~~~~~~~~~~~---l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~ 353 (728)
T KOG4535|consen 277 QVLTLLARYFSMTQAYLME---LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPL 353 (728)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCC
Confidence 4444443221111111111 1111111114557778888888777665432 22222211 12111111
Q ss_pred --HhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCC
Q 011328 207 --RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ 284 (488)
Q Consensus 207 --~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 284 (488)
..-.+..+......|.++.++..........-.+.-.+-.+.-+-++++.-++..|++.++-+.-+.........-..
T Consensus 354 ~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~ 433 (728)
T KOG4535|consen 354 PRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVAD 433 (728)
T ss_pred hhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHH
Confidence 011223456677777788777643221111000001111111112334445677788887777765443333334445
Q ss_pred ChHHHHHHhcccchhhHHHHHHHHHHHHhc----C--CHHHH-HHHHHcCChHHHHHHHhc---CChhHHHHHHHHHHHh
Q 011328 285 ALPCLLDLLTQNYKKSIKKEACWTISNITA----G--NVNQI-QAIIEAGIIGPLVNLLLN---AEFEIKKEAAWAISNA 354 (488)
Q Consensus 285 ~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~----~--~~~~~-~~l~~~~~l~~L~~ll~~---~~~~v~~~a~~aL~~l 354 (488)
....+...+.+. ....|..++|+++|+.. + +++.. ..+.. -.+..+++.-.. ..+.|+.++.++|+|+
T Consensus 434 aa~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navraLgnl 511 (728)
T KOG4535|consen 434 AANAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVRALGNL 511 (728)
T ss_pred HHHHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhH
Confidence 667777778777 77899999999999985 1 22211 12211 123333333222 2678999999999999
Q ss_pred ccCCCH--HHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhh
Q 011328 355 TSGGSN--EQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAG 401 (488)
Q Consensus 355 ~~~~~~--~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~L~~l~~~~ 401 (488)
...-.+ +........+.+..+....- ...-+++=+++.+++|+++..
T Consensus 512 lQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~ 561 (728)
T KOG4535|consen 512 LQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNP 561 (728)
T ss_pred HHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCc
Confidence 743211 01111111222222222221 234578888899999998653
No 120
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.0013 Score=61.05 Aligned_cols=226 Identities=12% Similarity=0.122 Sum_probs=167.1
Q ss_pred HhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccC----CC----ccHHHHHHcCCHHHHHHhhcCCC-----ChhHHH
Q 011328 26 QLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIE----RS----PPINEVIQSGVVPRFIEFLSRDD-----FPQLQF 92 (488)
Q Consensus 26 ~~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~----~~----~~~~~~~~~~~i~~L~~lL~~~~-----~~~v~~ 92 (488)
-..+++++.++.+|..++.++....+..+..+...+ +. ..++.+++.++++.|++.++.=+ ..+-..
T Consensus 121 lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~ 200 (536)
T KOG2734|consen 121 LVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVH 200 (536)
T ss_pred HHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhH
Confidence 344589999999999999999999999999875432 11 23577788999999998886433 122345
Q ss_pred HHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc--
Q 011328 93 EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-- 168 (488)
Q Consensus 93 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-- 168 (488)
.++.++-|+..-.++....+++.|.+.-|+.-+.. .-..-...|..+++-+..++.+.+..+-..+++..+++.+.
T Consensus 201 ~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~y 280 (536)
T KOG2734|consen 201 NTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVY 280 (536)
T ss_pred HHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchh
Confidence 66778888888889999999998888887774433 44556677888999998888877777777888888888774
Q ss_pred --cc----ccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc--hhHHHHHH
Q 011328 169 --EH----AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN--DKIQAVIE 240 (488)
Q Consensus 169 --~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~--~~~~~~~~ 240 (488)
++ ...+...+...+|+.+.....+........++..+.-+++. ....+..++.+|-....+++ +....+++
T Consensus 281 k~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe 359 (536)
T KOG2734|consen 281 KRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVE 359 (536)
T ss_pred hccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 11 23467788888888888877666666666677765555554 66678888999988877665 55666777
Q ss_pred hCCHHHHHHhcC
Q 011328 241 AGVCPRLVELLR 252 (488)
Q Consensus 241 ~~~l~~L~~lL~ 252 (488)
..++..++.+..
T Consensus 360 ~lGLrtiF~~FM 371 (536)
T KOG2734|consen 360 ILGLRTIFPLFM 371 (536)
T ss_pred HHhHHHHHHHHh
Confidence 777777766643
No 121
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.0053 Score=63.47 Aligned_cols=261 Identities=14% Similarity=0.114 Sum_probs=159.7
Q ss_pred cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchh
Q 011328 72 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKC 150 (488)
Q Consensus 72 ~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~ 150 (488)
+.++..|+..+++.+ ..+|-.|++.++.++...|.. +. ..++...+.++.. +++..-..++-+|+.++...--.
T Consensus 340 E~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~~---La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl 414 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPPE---LA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL 414 (1133)
T ss_pred HHHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcHH---HH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence 368888889999999 799999999999999866522 21 1345666665554 45677778999999998654221
Q ss_pred HHHHHhcCChHHHHHHhc-------ccccHhHHHHHHHHHHHhhcCCCCC-ChhhhhchHHHHH-HhhccCChhHHHHHH
Q 011328 151 RDLVLSNGALMPLLAQFN-------EHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALE-RLIHSNDDEVLTDAC 221 (488)
Q Consensus 151 ~~~~~~~~~l~~L~~ll~-------~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~l~-~ll~~~~~~v~~~al 221 (488)
-..+. .+++.+++-+. .+....+|.+|+++++.+++..... -........+.++ ..+-+.+-..|..|.
T Consensus 415 ps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAs 492 (1133)
T KOG1943|consen 415 PSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAAS 492 (1133)
T ss_pred hHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHH
Confidence 11221 24555555442 1235679999999999999876322 2223333333333 333456777888888
Q ss_pred HHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHH-hcccchhh
Q 011328 222 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL-LTQNYKKS 300 (488)
Q Consensus 222 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l-L~~~~~~~ 300 (488)
.++........+.- .+++ |+...+.-.-..+..+...+..-....+..+..+++ .++.. +.+- +..
T Consensus 493 AAlqE~VGR~~n~p------~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HW-d~~ 559 (1133)
T KOG1943|consen 493 AALQENVGRQGNFP------HGIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHW-DVK 559 (1133)
T ss_pred HHHHHHhccCCCCC------Cchh-hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccc-cHH
Confidence 88876653322110 1111 112222222334445444454444444444443332 23332 5666 889
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011328 301 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 301 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
+|..++++|.+++...++. ...+.++.++....+++...+.-+..+.+.++.
T Consensus 560 irelaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 560 IRELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred HHHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 9999999999998754543 344678889998888888877766666666654
No 122
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.0053 Score=63.50 Aligned_cols=258 Identities=15% Similarity=0.152 Sum_probs=156.0
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCCh
Q 011328 116 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 195 (488)
Q Consensus 116 g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 195 (488)
++++.|+..+++.+..+|-.|+..++.++...|. ... ..++...+.++...+++..-..++-+|..++... -...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~--~La--d~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP--ELA--DQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LLLP 415 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH--HHH--HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Ccch
Confidence 4567777778888999999999999999977762 222 2356777777766667788889999999999865 2222
Q ss_pred hhhhchHHHHHHhhc--------cCChhHHHHHHHHHHHhccCCc-hhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHH
Q 011328 196 EQTRPALPALERLIH--------SNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 266 (488)
Q Consensus 196 ~~~~~~~~~l~~ll~--------~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L 266 (488)
.....++|.+++.+. +.-..||..|+.+.+.++.... ...+.+...=.-..+...+-+.+-.+|++|..++
T Consensus 416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 234567777777665 2346789999999999886543 2233333221222334445667778898888877
Q ss_pred hHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHH-HhcCChhHHH
Q 011328 267 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNL-LLNAEFEIKK 345 (488)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~l-l~~~~~~v~~ 345 (488)
-......... ..+++ |+...+.- .-..|..+...++.-....+..+..+++ .++.. +.+-|..+|+
T Consensus 496 qE~VGR~~n~------p~Gi~-Lis~~dy~-sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HWd~~ire 562 (1133)
T KOG1943|consen 496 QENVGRQGNF------PHGIS-LISTIDYF-SVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHWDVKIRE 562 (1133)
T ss_pred HHHhccCCCC------CCchh-hhhhcchh-hhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccccHHHHH
Confidence 6655421111 01222 11111111 2223334444444444444444444433 22221 3334889999
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHH
Q 011328 346 EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN 396 (488)
Q Consensus 346 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~ 396 (488)
.++++|.+++... ......+.++.|++.....+...+..+.-+...
T Consensus 563 laa~aL~~Ls~~~-----pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~e 608 (1133)
T KOG1943|consen 563 LAAYALHKLSLTE-----PKYLADYVLPPLLDSTLSKDASMRHGVFLAAGE 608 (1133)
T ss_pred HHHHHHHHHHHhh-----HHhhcccchhhhhhhhcCCChHHhhhhHHHHHH
Confidence 9999999987533 333445778888888777776665554444333
No 123
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=0.0027 Score=59.04 Aligned_cols=228 Identities=13% Similarity=0.162 Sum_probs=161.6
Q ss_pred CccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC-----ch----hhHHHHhCCCHHHHHHhhCC------
Q 011328 63 SPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT-----SE----NTRVVIDHGAVPIFVRLLSS------ 127 (488)
Q Consensus 63 ~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~-----~~----~~~~~~~~g~i~~L~~~L~~------ 127 (488)
++....+++.++++.|+++|.+.+ .++....+..+..++..+ .+ ..+.+++.++++.|++-++.
T Consensus 115 PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvk 193 (536)
T KOG2734|consen 115 PDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVK 193 (536)
T ss_pred hHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcch
Confidence 455667889999999999999999 799999999999887532 22 34567788999999998765
Q ss_pred CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc-cccHhHHHHHHHHHHHhhcCCC-CCChhhhhchHHHH
Q 011328 128 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPAL 205 (488)
Q Consensus 128 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~l 205 (488)
+...-...++..+-|+....+.....+.+.|.+..|+..+.. ..-.....+|...++-+..+.. +......-.++..+
T Consensus 194 eea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~l 273 (536)
T KOG2734|consen 194 EEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVL 273 (536)
T ss_pred hhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHH
Confidence 234455677888899998888888888888989888886633 2444567788888888887763 33333334555555
Q ss_pred HHhhc----cC-----ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCc--
Q 011328 206 ERLIH----SN-----DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-- 274 (488)
Q Consensus 206 ~~ll~----~~-----~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-- 274 (488)
++-+. ++ ..+..+....+|+.+......+ ..+....+++...-+++. ....+..++++|-....+.+
T Consensus 274 L~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr-~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt 351 (536)
T KOG2734|consen 274 LRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANR-ERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGT 351 (536)
T ss_pred HhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhh-hhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCch
Confidence 55443 21 2456777888888777665544 567777777776666665 44567889999988887665
Q ss_pred hhhHHHhhCCChHHHHHHh
Q 011328 275 MQTQCIINHQALPCLLDLL 293 (488)
Q Consensus 275 ~~~~~~~~~~~~~~L~~lL 293 (488)
..+..+++..++..+....
T Consensus 352 ~~C~kfVe~lGLrtiF~~F 370 (536)
T KOG2734|consen 352 PNCNKFVEILGLRTIFPLF 370 (536)
T ss_pred HHHHHHHHHHhHHHHHHHH
Confidence 4555566666666666544
No 124
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.97 E-value=0.00012 Score=65.16 Aligned_cols=186 Identities=19% Similarity=0.129 Sum_probs=120.9
Q ss_pred ccCChhHHHHHHHHHHHhccCC--chhHHHHHHh--CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCC
Q 011328 210 HSNDDEVLTDACWALSYLSDGT--NDKIQAVIEA--GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQA 285 (488)
Q Consensus 210 ~~~~~~v~~~al~~L~~l~~~~--~~~~~~~~~~--~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 285 (488)
.+.+++.+..++..|..++... ......+.+. .++..+...+.+....+...|+.++..++...........+ .+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD-IL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH-HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH-HH
Confidence 4568999999999999988655 2222222221 56677888888888889999999999999865555444433 57
Q ss_pred hHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCC-hHHHHHHHhcCChhHHHHHHHHHHHhccCCC---HH
Q 011328 286 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI-IGPLVNLLLNAEFEIKKEAAWAISNATSGGS---NE 361 (488)
Q Consensus 286 ~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~-l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~---~~ 361 (488)
++.|++.+.++ ...++..|..+|..++...+-.. .+ ++.+.....++++.+|..++..+..+..... ..
T Consensus 96 l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~------~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 96 LPPLLKKLGDS-KKFIREAANNALDAIIESCSYSP------KILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcHH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 88899999888 88899999999999998533100 12 5556667788899999999999999986554 11
Q ss_pred HHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 011328 362 QIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA 403 (488)
Q Consensus 362 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~ 403 (488)
......-..+++.+..++.++++++|..+-.++..+....+.
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 111111124688899999999999999999999988766553
No 125
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.92 E-value=0.018 Score=58.74 Aligned_cols=169 Identities=17% Similarity=0.192 Sum_probs=124.7
Q ss_pred hcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCH
Q 011328 39 VWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAV 118 (488)
Q Consensus 39 L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 118 (488)
+.|.+...+..|++.+....... .+ . ...++-+++...+.+ .+++.-.-.-+.+.+...|+..-. .+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G-~d-m-----ssLf~dViK~~~trd-~ElKrL~ylYl~~yak~~P~~~lL-----av 94 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLG-ED-M-----SSLFPDVIKNVATRD-VELKRLLYLYLERYAKLKPELALL-----AV 94 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcC-CC-h-----HHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhccCHHHHHH-----HH
Confidence 66777888888887666554433 22 2 135667777777667 899988888888888866632221 36
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhh
Q 011328 119 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 198 (488)
Q Consensus 119 ~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 198 (488)
+.+.+=++++++.+|..|+++++.+= .++.-. ..++++.+.+ .+.++.||+.|+.++..+-+-+ ......
T Consensus 95 Nti~kDl~d~N~~iR~~AlR~ls~l~--~~el~~-----~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld--~~l~~~ 164 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFALRTLSLLR--VKELLG-----NIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLD--KDLYHE 164 (757)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHhcC--hHHHHH-----HHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcC--Hhhhhc
Confidence 78888889999999999999999882 222211 2566777888 8889999999999999998653 233334
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 011328 199 RPALPALERLIHSNDDEVLTDACWALSYLSDG 230 (488)
Q Consensus 199 ~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~ 230 (488)
.|....+..++.+.++.+...|+.++..+...
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 56777888888899999999999999988654
No 126
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.017 Score=59.34 Aligned_cols=340 Identities=14% Similarity=0.144 Sum_probs=193.4
Q ss_pred HHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhc------CC-CChhHHHHHHHHHHHhcCC--CchhhHHHHhCCCHHH
Q 011328 50 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS------RD-DFPQLQFEAAWALTNIASG--TSENTRVVIDHGAVPI 120 (488)
Q Consensus 50 a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~------~~-~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~g~i~~ 120 (488)
|...+..+.++...++. .++++.+++.+. .+ +++.-+..|++.++++++. .+..-...++.=+++.
T Consensus 392 a~~~l~~~~~KR~ke~l-----~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~h 466 (1010)
T KOG1991|consen 392 ALDFLTTLVSKRGKETL-----PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNH 466 (1010)
T ss_pred HHHHHHHHHHhcchhhh-----hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHH
Confidence 55566665554323333 356677777776 22 2367788899999998851 1111122233344566
Q ss_pred HHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCC---Chhh
Q 011328 121 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP---LFEQ 197 (488)
Q Consensus 121 L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~ 197 (488)
+...++++.--+|..|+|+++.++.-.-.....+ ..++....+.|..+.+-.|+..|+.+|..+..+.+.. ....
T Consensus 467 VfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~h 544 (1010)
T KOG1991|consen 467 VFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAH 544 (1010)
T ss_pred hhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhh
Confidence 6677788889999999999999984332111222 2356666777756788899999999999998876332 3334
Q ss_pred hhchHHHHHHhhccCChhHHHHHHHHH-HHhccCCchhHHHHHHhCCHHHHHHhcCC---CC---cchHhHHHHHHhHhh
Q 011328 198 TRPALPALERLIHSNDDEVLTDACWAL-SYLSDGTNDKIQAVIEAGVCPRLVELLRH---PS---PSVLIPALRTVGNIV 270 (488)
Q Consensus 198 ~~~~~~~l~~ll~~~~~~v~~~al~~L-~~l~~~~~~~~~~~~~~~~l~~L~~lL~~---~~---~~v~~~a~~~L~~l~ 270 (488)
+.+.++.++++.+.-+.+....++..+ +..+..-......+.. .+...+.+++.. .+ .+-...|.++|..+.
T Consensus 545 vp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~ 623 (1010)
T KOG1991|consen 545 VPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTIS 623 (1010)
T ss_pred hhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHH
Confidence 456666666666655444444444433 2232221112121222 445566666653 22 223334444444443
Q ss_pred c---C--CchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHH
Q 011328 271 T---G--DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK 345 (488)
Q Consensus 271 ~---~--~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~ 345 (488)
. . +....-.-++..+++.+-.+|++. -.++-.+++..+.++....++..-.+. |+++.+.+.+.....+--.
T Consensus 624 Til~s~e~~p~vl~~le~~~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~ 700 (1010)
T KOG1991|consen 624 TILLSLENHPEVLKQLEPIVLPVIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFT 700 (1010)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHH
Confidence 2 1 111112223445677777778777 677778888888777664333222333 3677788888887777788
Q ss_pred HHHHHHHHhccCCCHHHHHHH-HHCCChHHHHhhcCCCC--HHHHHHHHHHHHHHHHh
Q 011328 346 EAAWAISNATSGGSNEQIKFL-VSQGCIKPLCDLLNCPD--PRIVTVCLEGLENILKA 400 (488)
Q Consensus 346 ~a~~aL~~l~~~~~~~~~~~l-~~~~~i~~L~~ll~~~~--~~v~~~al~~L~~l~~~ 400 (488)
...-+|.|....+.+.....- ...-.......++.+.+ ..=.+.|++.+.-++-.
T Consensus 701 d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~ 758 (1010)
T KOG1991|consen 701 DMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILN 758 (1010)
T ss_pred HHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHH
Confidence 889999988877654322110 00112334444444422 22234566666666533
No 127
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.91 E-value=8.5e-05 Score=55.25 Aligned_cols=95 Identities=18% Similarity=0.307 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC
Q 011328 301 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 380 (488)
Q Consensus 301 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~ 380 (488)
.|+.++.+|..++.+-+......++ .++++++..+.++++.||..|+.+|.|++.....+...++-+ +++.|.+++.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~--IF~~L~kl~~ 78 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNE--IFDALCKLSA 78 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHc
Confidence 3677888888887754454555554 489999999999999999999999999998765555555544 8899999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 011328 381 CPDPRIVTVCLEGLENILK 399 (488)
Q Consensus 381 ~~~~~v~~~al~~L~~l~~ 399 (488)
++++.|+..| +.|.++++
T Consensus 79 D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred CCchhHHHHH-HHHHHHhc
Confidence 9999886554 67777654
No 128
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.018 Score=60.40 Aligned_cols=236 Identities=13% Similarity=0.060 Sum_probs=146.2
Q ss_pred HHHHHhcccccHhHHHHHHHHHHHhhcCCCC--CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHH
Q 011328 162 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ--PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 239 (488)
Q Consensus 162 ~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~ 239 (488)
.+.....++.+..++..+...|..++...+. ........+...+..-+++.....+...+.++..+....+.....++
T Consensus 657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 657 TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3444454666888999999999999988422 22233355666666667777888899999999988866552222233
Q ss_pred HhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc-------CCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHH
Q 011328 240 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVT-------GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 312 (488)
Q Consensus 240 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~-------~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl 312 (488)
...+.+.++. ++..+...|..+..+|..++. +++. ....++ .+++.+...+-.. ...++...+.++..+
T Consensus 737 ~k~I~EvIL~-~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~ln-efl~~Isagl~gd-~~~~~as~Ivai~~i 812 (1176)
T KOG1248|consen 737 PKLIPEVILS-LKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILN-EFLSIISAGLVGD-STRVVASDIVAITHI 812 (1176)
T ss_pred HHHHHHHHHh-cccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHH-HHHHHHHhhhccc-HHHHHHHHHHHHHHH
Confidence 3233344444 477788888898888888873 1111 011111 2333333333333 333333334455554
Q ss_pred hcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHH
Q 011328 313 TAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE 392 (488)
Q Consensus 313 ~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~ 392 (488)
..........-.-.+++..+..+|.+.+.+++..|+..+..++............+ .+++.+..+.++...+++..+-.
T Consensus 813 l~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~-~LL~sll~ls~d~k~~~r~Kvr~ 891 (1176)
T KOG1248|consen 813 LQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLE-ELLPSLLALSHDHKIKVRKKVRL 891 (1176)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHH-HHHHHHHHHHHhhhHHHHHHHHH
Confidence 43222222222223466677788889999999999999999998765554444332 46788888888878888888888
Q ss_pred HHHHHHHhhh
Q 011328 393 GLENILKAGE 402 (488)
Q Consensus 393 ~L~~l~~~~~ 402 (488)
.|..++....
T Consensus 892 LlekLirkfg 901 (1176)
T KOG1248|consen 892 LLEKLIRKFG 901 (1176)
T ss_pred HHHHHHHHhC
Confidence 8888876543
No 129
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.90 E-value=4.9e-05 Score=56.21 Aligned_cols=87 Identities=28% Similarity=0.443 Sum_probs=69.4
Q ss_pred HHHHHHhh-cCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHH
Q 011328 75 VPRFIEFL-SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 153 (488)
Q Consensus 75 i~~L~~lL-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (488)
++.|++.| ++++ +.+|..++++|+.+-. + ..++.|..+++++++.+|..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 57889999 6666 9999999999995432 1 34899999999999999999999999983
Q ss_pred HHhcCChHHHHHHhcccccHhHHHHHHHHHH
Q 011328 154 VLSNGALMPLLAQFNEHAKLSMLRNATWTLS 184 (488)
Q Consensus 154 ~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 184 (488)
....++.|.+.+.++.+..++..|..+|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12367889998966667777888888874
No 130
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.90 E-value=4.1e-05 Score=56.61 Aligned_cols=86 Identities=31% Similarity=0.497 Sum_probs=69.8
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011328 32 LPAMVAGV-WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 32 i~~l~~~L-~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
||.|++.| +++++.++..++++|.++-. ..+++.|++++++++ +.+|..|+++|+.+-.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~i~~------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD------------PEAIPALIELLKDED-PMVRRAAARALGRIGD------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------------HHHHHHHHHHHTSSS-HHHHHHHHHHHHCCHH-------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-------
Confidence 57899999 78999999999999995321 135899999998888 9999999999998732
Q ss_pred HHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHh
Q 011328 111 VVIDHGAVPIFVRLLSS-PTDDVREQAVWALG 141 (488)
Q Consensus 111 ~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~ 141 (488)
...++.|.+++.+ ++..+|..|+.+|+
T Consensus 61 ----~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 ----PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ----HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 2368999998887 45667999988875
No 131
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.89 E-value=0.0046 Score=62.67 Aligned_cols=324 Identities=12% Similarity=0.091 Sum_probs=191.0
Q ss_pred HHHHhc-CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011328 35 MVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 113 (488)
Q Consensus 35 l~~~L~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 113 (488)
+...+. ++.|....++.+.+....+.. .... . ...-++...+..+..+..+-++..|++++...++ ++.... .
T Consensus 454 ~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~-~~~~-~-~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~-~ 527 (1005)
T KOG2274|consen 454 IDNGLVYQESPFLLLRAFLTISKFSSST-VINP-Q-LLQHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLS-L 527 (1005)
T ss_pred HHhhcccccCHHHHHHHHHHHHHHHhhh-ccch-h-HHHHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccc-c
Confidence 334443 566777778888888776542 1111 1 1122445555666555547889999999888874 222111 2
Q ss_pred hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHh-cccccHhHHHHHHHHHHHhhcCCCC
Q 011328 114 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF-NEHAKLSMLRNATWTLSNFCRGKPQ 192 (488)
Q Consensus 114 ~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~~v~~~a~~~L~~l~~~~~~ 192 (488)
..+++..|.++....+.++....+.+|+..+..+|+.... .+..+.+-.+.+. ..++|+.+...+-.++..++... .
T Consensus 528 ~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~ 605 (1005)
T KOG2274|consen 528 QPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-A 605 (1005)
T ss_pred chHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-H
Confidence 3467888888888888999999999999999988875333 3444455444443 35567777777777777777632 2
Q ss_pred CChhhhhchHHHHHHhhccCC----hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc-CCCCcchHhHHHHHHh
Q 011328 193 PLFEQTRPALPALERLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVG 267 (488)
Q Consensus 193 ~~~~~~~~~~~~l~~ll~~~~----~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~L~ 267 (488)
..-......+|.++..+..++ ......++..|..+.++.+.-....+-.-.++.+.++. .+.+..+...+-.||.
T Consensus 606 ~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLr 685 (1005)
T KOG2274|consen 606 NYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLR 685 (1005)
T ss_pred hhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHH
Confidence 222334568899999998765 66677788888877765443333333335677777775 4567788889999999
Q ss_pred HhhcCCchhhHHHhhCC------ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHH-HHhcCC
Q 011328 268 NIVTGDDMQTQCIINHQ------ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVN-LLLNAE 340 (488)
Q Consensus 268 ~l~~~~~~~~~~~~~~~------~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~-ll~~~~ 340 (488)
.+.....++...--..+ ++..+-++|+...+......+...+..+..+-+......++. ++..++. +-+...
T Consensus 686 a~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~-IL~Avisrmq~ae~ 764 (1005)
T KOG2274|consen 686 ALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQ-ILRAVISRLQQAET 764 (1005)
T ss_pred HHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHhhh
Confidence 98876554433222222 233344444333122222222333333333222222222221 3333333 333446
Q ss_pred hhHHHHHHHHHHHhccCCCHHHHHHHH
Q 011328 341 FEIKKEAAWAISNATSGGSNEQIKFLV 367 (488)
Q Consensus 341 ~~v~~~a~~aL~~l~~~~~~~~~~~l~ 367 (488)
..+.+.-..+++++...........|.
T Consensus 765 lsviQsLi~VfahL~~t~~~~~l~FL~ 791 (1005)
T KOG2274|consen 765 LSVIQSLIMVFAHLVHTDLDQLLNFLS 791 (1005)
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 778888888888888755433444443
No 132
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.85 E-value=3.6e-05 Score=50.98 Aligned_cols=55 Identities=22% Similarity=0.552 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHh
Q 011328 299 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 354 (488)
Q Consensus 299 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l 354 (488)
+.+|..|+++|++++...++....... .+++.|+.++.+++++||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999998876777666544 5999999999999999999999999875
No 133
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.026 Score=58.11 Aligned_cols=391 Identities=14% Similarity=0.104 Sum_probs=205.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhc-CCCChhHHHHHHHHHHHhcCCCchhhHH
Q 011328 33 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS-RDDFPQLQFEAAWALTNIASGTSENTRV 111 (488)
Q Consensus 33 ~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 111 (488)
+.+...++|+.--.|-+||+.+..+.+-+ -.. ...-..++....+.|. +.+ -.|+..|+.+|..+....+.....
T Consensus 465 ~hVfP~f~s~~g~Lrarac~vl~~~~~~d-f~d--~~~l~~ale~t~~~l~~d~~-lPV~VeAalALq~fI~~~~~~~e~ 540 (1010)
T KOG1991|consen 465 NHVFPEFQSPYGYLRARACWVLSQFSSID-FKD--PNNLSEALELTHNCLLNDNE-LPVRVEAALALQSFISNQEQADEK 540 (1010)
T ss_pred HHhhHhhcCchhHHHHHHHHHHHHHHhcc-CCC--hHHHHHHHHHHHHHhccCCc-CchhhHHHHHHHHHHhcchhhhhh
Confidence 34455556777788999999999987543 111 1222345666677777 555 789999999999998855544343
Q ss_pred HHhC--CCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccc--c---cHhHHHHHHHHH
Q 011328 112 VIDH--GAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH--A---KLSMLRNATWTL 183 (488)
Q Consensus 112 ~~~~--g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~---~~~v~~~a~~~L 183 (488)
+... +.++.|+.+.+. ++..+....=..++..+..-..+...+. .+......+.+..+ . +.+-...|..+|
T Consensus 541 ~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL 619 (1010)
T KOG1991|consen 541 VSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGIL 619 (1010)
T ss_pred HhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHH
Confidence 3322 455666666665 3333333222333444433222222222 23444555666321 1 222233344444
Q ss_pred HHhh---cCCCCC---ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcc
Q 011328 184 SNFC---RGKPQP---LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 257 (488)
Q Consensus 184 ~~l~---~~~~~~---~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~ 257 (488)
..+. ..-+.. .......++|.+-..+++.-.++-+.++..+.++....++....+. ++++.+.+.+....-.
T Consensus 620 ~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~d 697 (1010)
T KOG1991|consen 620 RTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGID 697 (1010)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHH
Confidence 3332 221111 1122345666666777777778888888888777655443333233 6778888888777666
Q ss_pred hHhHHHHHHhHhhcCCchhhHHHhhC-C----ChHHHHHHhcccc-hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Q 011328 258 VLIPALRTVGNIVTGDDMQTQCIINH-Q----ALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP 331 (488)
Q Consensus 258 v~~~a~~~L~~l~~~~~~~~~~~~~~-~----~~~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~ 331 (488)
.-....-+|.|....... .+.+. . +...+...+.+.. ...-...|+..+.-+........+..+.. ++..
T Consensus 698 yf~d~~~~l~N~vt~g~~---~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~ipl-f~~~ 773 (1010)
T KOG1991|consen 698 YFTDMMPALHNYVTYGTP---SLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPL-FLEL 773 (1010)
T ss_pred HHHHHHHHHhhheeeCch---hhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHH-HHHH
Confidence 777778888876653221 11111 1 2333444444421 22233446666665544212222221111 2222
Q ss_pred HHHHHhc--CChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC-----CCHHHHHHHHHHHHHHHHhhhhh
Q 011328 332 LVNLLLN--AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-----PDPRIVTVCLEGLENILKAGEAE 404 (488)
Q Consensus 332 L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-----~~~~v~~~al~~L~~l~~~~~~~ 404 (488)
.+.-+.. .+...+..++.+..|............|-+.|....+..+.-+ ....-++.++-+|..++..++..
T Consensus 774 a~~~l~~~~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~ff~~wf~~~~~~~~~HDkKlcvL~l~tli~l~~~~ 853 (1010)
T KOG1991|consen 774 ALSRLTREVETSELRVMLLEVVINALYYNPKLTLGILENQGFLNNFFTLWFQFINQFKKVHDKKLCVLGLLTLISLGQDP 853 (1010)
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccC
Confidence 2333333 3567788888888887776666667777777776554443221 11112344555666666665332
Q ss_pred hccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHH
Q 011328 405 KNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445 (488)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~ 445 (488)
.. ....+. +..+.+..+..+--..++.+|.
T Consensus 854 ~~---------~~e~l~--~l~~~lv~L~~~Lp~ala~ra~ 883 (1010)
T KOG1991|consen 854 QL---------PSEVLG--QLGPALVELLLSLPEALAERAQ 883 (1010)
T ss_pred Cc---------hHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 21 122222 4567777776665444544443
No 134
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.78 E-value=0.013 Score=57.11 Aligned_cols=297 Identities=15% Similarity=0.103 Sum_probs=168.1
Q ss_pred CHHHHHHHHHHHHHHhccCCCcc----HHHHHHcCCHHHHHHhhcCC----C--ChhHHHHHHHHHHHhcCCCc-hhhHH
Q 011328 43 DRNIQLDATTQFRKLLSIERSPP----INEVIQSGVVPRFIEFLSRD----D--FPQLQFEAAWALTNIASGTS-ENTRV 111 (488)
Q Consensus 43 ~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~~~i~~L~~lL~~~----~--~~~v~~~a~~~L~~l~~~~~-~~~~~ 111 (488)
+.......+..+..++....... .....+..+++.+.++.... . ++.+...+..++..+...-+ +..+.
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 55666677777777765442222 23333445788887776322 1 13555666666666665333 33333
Q ss_pred HHhCCCHHHHHHhhC----------CC------CHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhH
Q 011328 112 VIDHGAVPIFVRLLS----------SP------TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSM 175 (488)
Q Consensus 112 ~~~~g~i~~L~~~L~----------~~------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v 175 (488)
+ +..+..+.. .. ..........+++.+-.+.. -. .....+..++.+.....++..
T Consensus 136 ~-----~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~---~~-~~~~ll~~l~~~~~~~~~~~~ 206 (415)
T PF12460_consen 136 I-----LDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVS---LP-DLEELLQSLLNLALSSEDEFS 206 (415)
T ss_pred H-----HHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccC---cc-CHHHHHHHHHHHHHcCCChHH
Confidence 3 223333221 01 11222222233333322211 00 111256677777766667888
Q ss_pred HHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh-ccCChhHH----HHHHHHHHHhccCCchhHHHHHHhCCHHHHHHh
Q 011328 176 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVL----TDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 250 (488)
Q Consensus 176 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll-~~~~~~v~----~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 250 (488)
+..++.+++.+...-+... ....++..+..-+ ...+...+ +...|+...+.-....... ..+..|+.+
T Consensus 207 ~~~~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~l 279 (415)
T PF12460_consen 207 RLAALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLEL 279 (415)
T ss_pred HHHHHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHH
Confidence 8899999988886532222 3345555555544 22333333 3344444444433322222 455678888
Q ss_pred cCCCCcchHhHHHHHHhHhhcCCc--------hhhHHHhhCC----ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHH
Q 011328 251 LRHPSPSVLIPALRTVGNIVTGDD--------MQTQCIINHQ----ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 318 (488)
Q Consensus 251 L~~~~~~v~~~a~~~L~~l~~~~~--------~~~~~~~~~~----~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 318 (488)
+.+ +++...+...++-+....+ ...+.+.+.. ++|.+++..+.. +...|.....+|+.+..+-|.
T Consensus 280 L~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs~ll~~vP~ 356 (415)
T PF12460_consen 280 LSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALSHLLKNVPK 356 (415)
T ss_pred hCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHhhCCH
Confidence 877 5678888888888887622 2233333333 455555555655 555788889999999986554
Q ss_pred HHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCC
Q 011328 319 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 358 (488)
Q Consensus 319 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 358 (488)
..-.---..++|.|++.|..++.+++..++.+|..+....
T Consensus 357 ~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 357 SVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 3322222358999999999999999999999999998765
No 135
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.71 E-value=0.0043 Score=58.40 Aligned_cols=404 Identities=12% Similarity=0.087 Sum_probs=202.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccCCCcc--------------HHHHHHcC---CHHHHHHhhcCCCChhHHHHHHHH
Q 011328 35 MVAGVWSDDRNIQLDATTQFRKLLSIERSPP--------------INEVIQSG---VVPRFIEFLSRDDFPQLQFEAAWA 97 (488)
Q Consensus 35 l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~--------------~~~~~~~~---~i~~L~~lL~~~~~~~v~~~a~~~ 97 (488)
+.-.|+..++..+..|+..+..++.+. ... ...++... .-..|+-.|..+.++.+..++++|
T Consensus 52 ~~l~lkd~~~~~ra~alqv~~~~l~gs-k~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kc 130 (728)
T KOG4535|consen 52 MTLTLKDPSPKTRACALQVLSAILEGS-KQFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKC 130 (728)
T ss_pred eEEecCCCChhHHHHHHHHHHHHHHhh-HHHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 444567888889989999888887653 111 11112111 222344445555447888999999
Q ss_pred HHHhcCCCchhhHHHH-hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcC------------------
Q 011328 98 LTNIASGTSENTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG------------------ 158 (488)
Q Consensus 98 L~~l~~~~~~~~~~~~-~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~------------------ 158 (488)
|.++....|-.+-.+- -..++..+..++++.++.++-.++..++.+...+...-+.-...|
T Consensus 131 la~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~ 210 (728)
T KOG4535|consen 131 LANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDW 210 (728)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHH
Confidence 9999996666555442 223455666678889999999999999888653321111100000
Q ss_pred -----ChHHHHHHhccc---------------------------------------ccHhHHHHHHHHHHHhhcCCCCCC
Q 011328 159 -----ALMPLLAQFNEH---------------------------------------AKLSMLRNATWTLSNFCRGKPQPL 194 (488)
Q Consensus 159 -----~l~~L~~ll~~~---------------------------------------~~~~v~~~a~~~L~~l~~~~~~~~ 194 (488)
.-+.+.+.-..+ ....++-.+...|..++++.. ..
T Consensus 211 ~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~-~~ 289 (728)
T KOG4535|consen 211 WKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFS-MT 289 (728)
T ss_pred HHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHH-HH
Confidence 000011100000 001122223333322222210 00
Q ss_pred hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC-----CchhHHHHHHhCCHHHHH------Hh-cCCCCcchHhHH
Q 011328 195 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG-----TNDKIQAVIEAGVCPRLV------EL-LRHPSPSVLIPA 262 (488)
Q Consensus 195 ~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~-----~~~~~~~~~~~~~l~~L~------~l-L~~~~~~v~~~a 262 (488)
......+...+...+...++.++..+..++..+... .++..+.-...+.+-.+. .. -++..+..+..+
T Consensus 290 ~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~ 369 (728)
T KOG4535|consen 290 QAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASA 369 (728)
T ss_pred HHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHH
Confidence 001111222222233356778888887777765532 111111111112111111 01 122335566777
Q ss_pred HHHHhHhhcCCchhhHHHhhCCChHHHHHHh----cccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc
Q 011328 263 LRTVGNIVTGDDMQTQCIINHQALPCLLDLL----TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN 338 (488)
Q Consensus 263 ~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL----~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~ 338 (488)
|..+.++....... +.++--.....++ +++ +.-++.+|.++..-+.-+..-......-.+....+...+.+
T Consensus 370 Cdals~i~~~~f~~----lpn~~~T~~~~Fl~GC~d~~-~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d 444 (728)
T KOG4535|consen 370 CDALSSILPEAFSN----LPNDRQTLCITFLLGCNDSK-NRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLED 444 (728)
T ss_pred HHHHhhcCchhhcC----CCCcchhhhHHHHhcccchH-HHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhh
Confidence 77777776422111 0111111111111 233 55577778887776666522222222223456666777777
Q ss_pred CChhHHHHHHHHHHHhccC---C--CHH-HHHHHHHCCChHHHHhhcC---CCCHHHHHHHHHHHHHHHHhhhhhhccCC
Q 011328 339 AEFEIKKEAAWAISNATSG---G--SNE-QIKFLVSQGCIKPLCDLLN---CPDPRIVTVCLEGLENILKAGEAEKNMGN 409 (488)
Q Consensus 339 ~~~~v~~~a~~aL~~l~~~---~--~~~-~~~~l~~~~~i~~L~~ll~---~~~~~v~~~al~~L~~l~~~~~~~~~~~~ 409 (488)
+...+|.+++|+++|+... + +++ ....+.. -.+..+...-. ....+++.++.++|+++...-+..++..
T Consensus 445 ~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~- 522 (728)
T KOG4535|consen 445 KSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPT- 522 (728)
T ss_pred HhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhcc-
Confidence 7888999999999999742 1 111 2222111 12333333222 3456899999999999987655333221
Q ss_pred CCccchHHHHHHhhccHHHHHH-hhcCCCHHHHHHHHHHHHHhcCCC
Q 011328 410 TGGVNLFAQAIDDAEGLEKIEN-LQSHDNTEIYEKAVKILETYWVEE 455 (488)
Q Consensus 410 ~~~~~~~~~~l~~~g~~~~L~~-l~~~~~~~v~~~a~~~l~~~~~~~ 455 (488)
+.+.++ |.+.++-. ..-..+-+|+=-|-..+.++|..+
T Consensus 523 ------~~e~~~--~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~ 561 (728)
T KOG4535|consen 523 ------FAEIIE--ESIQALISTVLTEAAMKVRWNACYAMGNLFKNP 561 (728)
T ss_pred ------HHHHHH--HHHHhcccceecccccccchHHHHHHHHhhcCc
Confidence 222222 22333322 234456778888888899988754
No 136
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.0029 Score=62.79 Aligned_cols=328 Identities=13% Similarity=0.123 Sum_probs=166.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011328 34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 113 (488)
Q Consensus 34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 113 (488)
.+-+.|+++++-+|-..++.|+++= + .+ ++ ...+|.+...|.+.. ..+|..|..++..|-... +.++
T Consensus 103 a~RkDLQHPNEyiRG~TLRFLckLk--E-~E----Ll-epl~p~IracleHrh-sYVRrNAilaifsIyk~~----~~L~ 169 (948)
T KOG1058|consen 103 AYRKDLQHPNEYIRGSTLRFLCKLK--E-PE----LL-EPLMPSIRACLEHRH-SYVRRNAILAIFSIYKNF----EHLI 169 (948)
T ss_pred HHhhhccCchHhhcchhhhhhhhcC--c-HH----Hh-hhhHHHHHHHHhCcc-hhhhhhhheeehhHHhhh----hhhc
Confidence 4456677888888888888888842 2 22 22 357889999999999 899999999998887621 1121
Q ss_pred hCCCHHHHHHhhC-CCCHHHHHHHHHHHhhhhCCCchhHHHHH-------hcCC--hHHHHHHhcc--cccHhHHHHHHH
Q 011328 114 DHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVL-------SNGA--LMPLLAQFNE--HAKLSMLRNATW 181 (488)
Q Consensus 114 ~~g~i~~L~~~L~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-------~~~~--l~~L~~ll~~--~~~~~v~~~a~~ 181 (488)
. ++-+.+-.+|. ..++..+++|...|...-.. ..-..+. ..|. -..+++++.+ ..++..+..-..
T Consensus 170 p-DapeLi~~fL~~e~DpsCkRNAFi~L~~~D~E--rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~ 246 (948)
T KOG1058|consen 170 P-DAPELIESFLLTEQDPSCKRNAFLMLFTTDPE--RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIR 246 (948)
T ss_pred C-ChHHHHHHHHHhccCchhHHHHHHHHHhcCHH--HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHH
Confidence 1 22223333333 35666666666555443110 0000000 0000 0011111110 112333333333
Q ss_pred HHHHhhcCCCCCChhhhhchHHHHHHhhc-cCChhHHHHHHHHHHHhcc-CCchhHHH---------------HHHhCCH
Q 011328 182 TLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSD-GTNDKIQA---------------VIEAGVC 244 (488)
Q Consensus 182 ~L~~l~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~v~~~al~~L~~l~~-~~~~~~~~---------------~~~~~~l 244 (488)
++.++.............+ .+.. ++++.....|..++..+.. .++++... +++ |++
T Consensus 247 ~i~~lL~stssaV~fEaa~------tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~-~l~ 319 (948)
T KOG1058|consen 247 CIYNLLSSTSSAVIFEAAG------TLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQ-GLI 319 (948)
T ss_pred HHHHHHhcCCchhhhhhcc------eEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHH-HHH
Confidence 3333332220000000000 0000 1233333333333333331 11111111 111 445
Q ss_pred HHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHh------cccchhhHHHHHHHHHHHHhcCCHH
Q 011328 245 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL------TQNYKKSIKKEACWTISNITAGNVN 318 (488)
Q Consensus 245 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL------~~~~~~~v~~~a~~~L~nl~~~~~~ 318 (488)
--++..|.+++-+++..++.+...++.... ... ++..|-+-+ .+..+.+.|.....++..++...++
T Consensus 320 mDvLrvLss~dldvr~Ktldi~ldLvssrN--ved-----iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~ 392 (948)
T KOG1058|consen 320 MDVLRVLSSPDLDVRSKTLDIALDLVSSRN--VED-----IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE 392 (948)
T ss_pred HHHHHHcCcccccHHHHHHHHHHhhhhhcc--HHH-----HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH
Confidence 556677888888999999888877776332 111 111222211 1222456788889999999887676
Q ss_pred HHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC-CCHHHHHHHHHHHHHH
Q 011328 319 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPRIVTVCLEGLENI 397 (488)
Q Consensus 319 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~al~~L~~l 397 (488)
.. ..+++.|++.+.+.++......+..+......- +..+. ..++.|.+-+.. ...++...++|.++..
T Consensus 393 ~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~-p~Lr~-----~ii~~l~~~~~~irS~ki~rgalwi~GeY 461 (948)
T KOG1058|consen 393 VA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKF-PNLRA-----SIIEKLLETFPQIRSSKICRGALWILGEY 461 (948)
T ss_pred HH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhC-chHHH-----HHHHHHHHhhhhhcccccchhHHHHHHHH
Confidence 43 346888999999887654444444444433321 22222 345555554442 4567778888888877
Q ss_pred HHhhh
Q 011328 398 LKAGE 402 (488)
Q Consensus 398 ~~~~~ 402 (488)
+....
T Consensus 462 ce~~~ 466 (948)
T KOG1058|consen 462 CEGLS 466 (948)
T ss_pred HhhhH
Confidence 66544
No 137
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.0032 Score=62.79 Aligned_cols=140 Identities=12% Similarity=0.096 Sum_probs=84.6
Q ss_pred chHHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhH
Q 011328 200 PALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ 278 (488)
Q Consensus 200 ~~~~~l~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 278 (488)
..++.|..+|+. +.-+-..+...++..+....++..+ .++..|...+.+. +...-+.++|.-+....+..
T Consensus 391 ~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~a-- 461 (865)
T KOG1078|consen 391 VMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC--EFTQIAVRILHLLGKEGPKA-- 461 (865)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc--cchHHHHHHHHHHhccCCCC--
Confidence 344455555554 2345566666666666654444333 3344455544432 23444555555554433321
Q ss_pred HHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011328 279 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 355 (488)
Q Consensus 279 ~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~ 355 (488)
......+..+.....-. +..+|.+|..++.++...++.. ...+...|.+++.+.|.++|..|..+|.++.
T Consensus 462 -~~Pskyir~iyNRviLE-n~ivRaaAv~alaKfg~~~~~l-----~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 462 -PNPSKYIRFIYNRVILE-NAIVRAAAVSALAKFGAQDVVL-----LPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred -CCcchhhHHHhhhhhhh-hhhhHHHHHHHHHHHhcCCCCc-----cccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 12334555566655555 7889999999999998543332 2235667888999999999999999999986
No 138
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.011 Score=59.16 Aligned_cols=286 Identities=15% Similarity=0.132 Sum_probs=143.6
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChh
Q 011328 117 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 196 (488)
Q Consensus 117 ~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 196 (488)
..+.+-.++++....+...+++++.++....+. ...- .+..+=-++ .+....+|-.|..+|..++...|.....
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r--~l~p---avs~Lq~fl-ssp~~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR--ELAP---AVSVLQLFL-SSPKVALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccCHh--hcch---HHHHHHHHh-cCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence 356666778888889999999999998654431 1111 333333334 7778889999999999999876544333
Q ss_pred hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh
Q 011328 197 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 276 (488)
Q Consensus 197 ~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 276 (488)
.. .-+-.++.+.+..+...|..+|..-.. ......++ .-+..++.=+.++..-+...|.. .++...+..
T Consensus 320 cN----~elE~lItd~NrsIat~AITtLLKTG~--e~sv~rLm--~qI~~fv~disDeFKivvvdai~---sLc~~fp~k 388 (865)
T KOG1078|consen 320 CN----LDLESLITDSNRSIATLAITTLLKTGT--ESSVDRLM--KQISSFVSDISDEFKIVVVDAIR---SLCLKFPRK 388 (865)
T ss_pred cc----hhHHhhhcccccchhHHHHHHHHHhcc--hhHHHHHH--HHHHHHHHhccccceEEeHHHHH---HHHhhccHH
Confidence 22 234455556666666666555544322 22222222 12333333333333333334444 444333322
Q ss_pred hHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011328 277 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 277 ~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
. .+.+..|..+|..+...+.++....++..++..+++... .++..|+..+.+.. ...-+...|.-+..
T Consensus 389 ~-----~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce--~~~i~~rILhlLG~ 456 (865)
T KOG1078|consen 389 H-----TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCE--FTQIAVRILHLLGK 456 (865)
T ss_pred H-----HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhcc--chHHHHHHHHHHhc
Confidence 1 234555666665544566677777777776664444322 23444555554431 12223333333322
Q ss_pred CCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC
Q 011328 357 GGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD 436 (488)
Q Consensus 357 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~ 436 (488)
.+. ..-.....+..+.+.+.-.+..++..|..+|.++....+... ....-.+.+++.++
T Consensus 457 EgP----~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~-----------------~sI~vllkRc~~D~ 515 (865)
T KOG1078|consen 457 EGP----KAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLL-----------------PSILVLLKRCLNDS 515 (865)
T ss_pred cCC----CCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCcc-----------------ccHHHHHHHHhcCc
Confidence 110 000111234444444444455556666666655541111110 01123345555666
Q ss_pred CHHHHHHHHHHHHHhc
Q 011328 437 NTEIYEKAVKILETYW 452 (488)
Q Consensus 437 ~~~v~~~a~~~l~~~~ 452 (488)
+.+|+++|...+..+-
T Consensus 516 DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 516 DDEVRDRATFYLKNLE 531 (865)
T ss_pred hHHHHHHHHHHHHHhh
Confidence 6666666666555444
No 139
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.64 E-value=0.14 Score=55.38 Aligned_cols=395 Identities=10% Similarity=0.005 Sum_probs=200.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011328 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
.+..++..|.+....+|-.|+++|..+...++.-..+.-+. ..+-.-+.++. ..||+.|+..++......++...
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq----~~Vh~R~~Dss-asVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQ----EAVHGRLNDSS-ASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHH----HHHHHhhccch-hHHHHHHHHHHhhhhhccHHHHH
Confidence 45568888888889999999999999988653222232232 33334445566 79999999999987775666555
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc--ccccHhHHHHHHHHHHHhhc
Q 011328 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN--EHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 111 ~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~~~v~~~a~~~L~~l~~ 188 (488)
+.. ..+..-..+....||..++..+..+|...|.+... +....+++. .++...++.-++.++.++.-
T Consensus 892 qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i------~~~cakmlrRv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 892 QYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI------VDMCAKMLRRVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred HHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH------HHHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence 443 34445555678899999999999999888765332 233444443 33444589999999999887
Q ss_pred CCCCC--ChhhhhchHHHHHHh-------hccCChhHHHHHHHHHHHhccCCchhHHHHHHh---CCHHHHHHhc-----
Q 011328 189 GKPQP--LFEQTRPALPALERL-------IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELL----- 251 (488)
Q Consensus 189 ~~~~~--~~~~~~~~~~~l~~l-------l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL----- 251 (488)
.+... .......-++..+.. .....+.+....+..-.... .....+.+... ..+..+..++
T Consensus 961 ~p~~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~--~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ 1038 (1692)
T KOG1020|consen 961 TPVPEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKT--MKESVKPVALAKVTHVLNLLTHCLVEKIS 1038 (1692)
T ss_pred cCCCcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhh--hhhhhhHHHHhhcchHHHHHHHHHHHHHH
Confidence 66222 111111112211111 11222222222222111110 00111111111 1112222221
Q ss_pred -------CCCCcchH-hHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhccc----chhhHHHHHHHHHHHHhc---CC
Q 011328 252 -------RHPSPSVL-IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN----YKKSIKKEACWTISNITA---GN 316 (488)
Q Consensus 252 -------~~~~~~v~-~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~----~~~~v~~~a~~~L~nl~~---~~ 316 (488)
..+...++ ...+.+|..++...+... ....+..|...|.+. ....+-...+.++....- ..
T Consensus 1039 ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Ll----t~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~ 1114 (1692)
T KOG1020|consen 1039 EVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLL----TKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANP 1114 (1692)
T ss_pred hhhhHhhhcccchhHHHHHHHHHHHHHhcCchhc----cHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccc
Confidence 11222333 345566666666555322 113334455555443 233344444444433322 21
Q ss_pred HHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccC--CCHHHHHHHHHC--CChHHHHhhcCCC----CHHHHH
Q 011328 317 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG--GSNEQIKFLVSQ--GCIKPLCDLLNCP----DPRIVT 388 (488)
Q Consensus 317 ~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~l~~~--~~i~~L~~ll~~~----~~~v~~ 388 (488)
++..-. .+=..|+.++-.........|..+++.++.. .+.......... +.++.+..-..+. ......
T Consensus 1115 sesfL~----sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~ 1190 (1692)
T KOG1020|consen 1115 SESFLA----SLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQ 1190 (1692)
T ss_pred hHHHHH----HHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHH
Confidence 221111 1233455555555566667777778777753 122222221110 1111111111111 123455
Q ss_pred HHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011328 389 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 452 (488)
Q Consensus 389 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~ 452 (488)
+.+..++-++++++-............... ....+.+..|..+..+.+.+++.+|..-+..++
T Consensus 1191 RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~-~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~c 1253 (1692)
T KOG1020|consen 1191 RSIFTLGLLSRYFDFPKPSNDGKTFLQEGE-TLKEKVLILLMYFSKDKDGELRRKALINLGFIC 1253 (1692)
T ss_pred HHHHHHHHHHHhccCCCccCCCccchhhhh-hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 677777777776554433221111111112 233456677777777778888888888776654
No 140
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.009 Score=62.55 Aligned_cols=243 Identities=12% Similarity=0.099 Sum_probs=153.8
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh--CCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc-hhHHHH
Q 011328 78 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID--HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCRDLV 154 (488)
Q Consensus 78 L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~ 154 (488)
+.....+.++..+|..+.++|..++.. +.......+ ..+.+.|..-+++.....+...+.+|..|....+ +....+
T Consensus 658 v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 658 VDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred hhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 334444443489999999999999984 332222211 1344566666666677778888888888876554 222222
Q ss_pred HhcCChHHHHHHhcccccHhHHHHHHHHHHHhh--cCC---C-CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 011328 155 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC--RGK---P-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 228 (488)
Q Consensus 155 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~--~~~---~-~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~ 228 (488)
.. .++.++-.+ ++.+...++.+..+|..++ ... . .+.......+++.+...+-.....+....+-++..+.
T Consensus 737 ~k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il 813 (1176)
T KOG1248|consen 737 PK--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL 813 (1176)
T ss_pred HH--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 21 344444444 7778888999999998888 222 1 2224455666666666655444444444455566555
Q ss_pred cCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHH
Q 011328 229 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT 308 (488)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~ 308 (488)
....+......-.++++.+.-.|.+++++++..|+..+..++...+...-......+++.+..+++.. ...+|..+-..
T Consensus 814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L 892 (1176)
T KOG1248|consen 814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL 892 (1176)
T ss_pred HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence 43322222222235667777778899999999999999999987775543333345788888888776 78888888888
Q ss_pred HHHHhc-CCHHHHHHHHH
Q 011328 309 ISNITA-GNVNQIQAIIE 325 (488)
Q Consensus 309 L~nl~~-~~~~~~~~l~~ 325 (488)
+-.+++ ...+..+.+..
T Consensus 893 lekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 893 LEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHHhCHHHHHhhCH
Confidence 888877 34555555544
No 141
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.57 E-value=0.021 Score=55.99 Aligned_cols=238 Identities=15% Similarity=0.133 Sum_probs=151.0
Q ss_pred ccHHHHHHHh----------cCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCC-----CChhHHHHH
Q 011328 30 ESLPAMVAGV----------WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-----DFPQLQFEA 94 (488)
Q Consensus 30 ~~i~~l~~~L----------~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~-----~~~~v~~~a 94 (488)
+++..|++.- .+.++.+...|+++|+|++-.. ....+.+.+.|..+.+++.|+.. + .++..-.
T Consensus 22 ~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~-~d~~Fl~ 99 (446)
T PF10165_consen 22 EGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQP-SDVEFLD 99 (446)
T ss_pred HHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCC-hhHHHHH
Confidence 6677776665 2467899999999999988765 56678888999999999999876 4 7888899
Q ss_pred HHHHHHhcCCCchhhHHHHhC-CCHHHHHHhhCC-----------------CCHHHHHHHHHHHhhhhCCCchhHHHHHh
Q 011328 95 AWALTNIASGTSENTRVVIDH-GAVPIFVRLLSS-----------------PTDDVREQAVWALGNVAGDSPKCRDLVLS 156 (488)
Q Consensus 95 ~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~~L~~-----------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 156 (488)
.+.+.-++...++.+..+++. +++..+...+.. .+......++.++.|+..+.+.... -..
T Consensus 100 ~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~ 178 (446)
T PF10165_consen 100 SRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEF 178 (446)
T ss_pred HHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhh
Confidence 999988888788888887755 677777765532 1345567788888898765543222 012
Q ss_pred cCChHHHHHHhccc--------ccHhHHHHHHHHHHHhhcCC------------CCCChhhhhchHHHHHHhhc----cC
Q 011328 157 NGALMPLLAQFNEH--------AKLSMLRNATWTLSNFCRGK------------PQPLFEQTRPALPALERLIH----SN 212 (488)
Q Consensus 157 ~~~l~~L~~ll~~~--------~~~~v~~~a~~~L~~l~~~~------------~~~~~~~~~~~~~~l~~ll~----~~ 212 (488)
...++.++..+... .......+++.+|.++--.. ...........+..++.+|. ..
T Consensus 179 ~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~ 258 (446)
T PF10165_consen 179 SPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKY 258 (446)
T ss_pred hHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhc
Confidence 23344444443211 23456777888888772111 00011122345556666654 21
Q ss_pred ----ChhHHHHHHHHHHHhccCCchhHHHHHHhC-----------------CHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011328 213 ----DDEVLTDACWALSYLSDGTNDKIQAVIEAG-----------------VCPRLVELLRHPSPSVLIPALRTVGNIVT 271 (488)
Q Consensus 213 ----~~~v~~~al~~L~~l~~~~~~~~~~~~~~~-----------------~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 271 (488)
-.......+.+|..++.......+ .++.. +-..|++++.++.+.++..+...+..+|.
T Consensus 259 ~~~~l~~~l~PlL~lL~~~~~~~~~~Rk-~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 259 EALKLDELLTPLLTLLTRLARAAREVRK-YLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK 337 (446)
T ss_pred CcccchhhHhhHHHHHHHHHHhcHHHHH-HHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 135677788888888876644333 33333 34455566665556666666666666654
No 142
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.55 E-value=0.0011 Score=67.18 Aligned_cols=190 Identities=19% Similarity=0.163 Sum_probs=133.7
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHH--------HHh----cCChHHHHHHhcccccHhHHHHHHHHHH
Q 011328 117 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL--------VLS----NGALMPLLAQFNEHAKLSMLRNATWTLS 184 (488)
Q Consensus 117 ~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~--------~~~----~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 184 (488)
+...++.+|+. +++-..+..++.-+..|++.+... +.+ ..+++.+++.. ...+...+...+.+|+
T Consensus 816 ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~-~t~~~~~K~~yl~~Ls 892 (1030)
T KOG1967|consen 816 IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKF-ETAPGSQKHNYLEALS 892 (1030)
T ss_pred HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHh-ccCCccchhHHHHHHH
Confidence 34555556644 455556666676666655433211 111 23567777777 4556677888889999
Q ss_pred HhhcCCCCCChh-hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCC---cchHh
Q 011328 185 NFCRGKPQPLFE-QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS---PSVLI 260 (488)
Q Consensus 185 ~l~~~~~~~~~~-~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~---~~v~~ 260 (488)
++..+-|..... .....+|.+++.|.-+|..++..++.++..+....+.....-++ -+++.++.+-.+++ ..+|.
T Consensus 893 hVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~ 971 (1030)
T KOG1967|consen 893 HVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVRE 971 (1030)
T ss_pred HHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHH
Confidence 988866553333 34678899999999999999999999999887655444333332 46677777766554 57999
Q ss_pred HHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011328 261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 311 (488)
Q Consensus 261 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n 311 (488)
.|+.++..+.+..|...-......++..+.+.|+++ ..-+|++|..+=.+
T Consensus 972 ~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 972 DALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQN 1021 (1030)
T ss_pred HHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhh
Confidence 999999999997666655556678899999999999 89999999876543
No 143
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.55 E-value=0.014 Score=54.27 Aligned_cols=205 Identities=12% Similarity=0.085 Sum_probs=143.5
Q ss_pred HHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh-----hHHHhhCCChHHHHHHhcccchhhHHHHHHHHHH
Q 011328 236 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-----TQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 310 (488)
Q Consensus 236 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~ 310 (488)
+.+...+.+..|+..|..-+-+.|..+..+.+++.+..... ...+ ....-+.+..++..-.++++-..+...|.
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl-~~~~peil~~L~~gy~~~dial~~g~mlR 148 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYL-ERHRPEILDILLRGYENPDIALNCGDMLR 148 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHH-HT--THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHH-HhCCHHHHHHHHHHhcCccccchHHHHHH
Confidence 44666789999999999888889999999999998764433 2222 22223333344433335566677777788
Q ss_pred HHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHC---CChHHHHhhcCCCCHHHH
Q 011328 311 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ---GCIKPLCDLLNCPDPRIV 387 (488)
Q Consensus 311 nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~---~~i~~L~~ll~~~~~~v~ 387 (488)
.++.. +...+.++....+..+++.++.++.++...|..++..+.... +.....+... ..+..+..++.+++.-++
T Consensus 149 ec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~h-k~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 149 ECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRH-KKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 77766 667778888889999999999999999999999999987654 3443333333 446778889999999999
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011328 388 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 452 (488)
Q Consensus 388 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~ 452 (488)
.+++..|+.++..-..... ....+.+..-+..+..++.+++..++-.|..+..-+.
T Consensus 227 rqslkLL~ellldr~n~~v---------m~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFV 282 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNV---------MTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFV 282 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHH---------HHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHchhHHHH---------HHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence 9999999999866554321 3455556666888888899999999888877765443
No 144
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.55 E-value=0.0005 Score=51.11 Aligned_cols=68 Identities=16% Similarity=0.336 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhC--CCCHHHHHHHHHHHhhhhCCCchhHHHHHhc
Q 011328 90 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLSN 157 (488)
Q Consensus 90 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 157 (488)
.+...+++|++++..++...+.+.+.|+++.++.... ..+|-+++.|++++.+++.++++.++.+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3567789999999999999999999999999999654 4789999999999999999999887776553
No 145
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.55 E-value=0.049 Score=50.79 Aligned_cols=225 Identities=11% Similarity=0.117 Sum_probs=155.9
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchh-----HHHHHHh--CCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011328 199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK-----IQAVIEA--GVCPRLVELLRHPSPSVLIPALRTVGNIVT 271 (488)
Q Consensus 199 ~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~-----~~~~~~~--~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 271 (488)
.+.+..++..|..-+-+.+..+..+..++.....+. .+.+.+. +++..|+..-. ++++...+-..|...+.
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRec~k 152 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRECIK 152 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHHHTT
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHHHHh
Confidence 578888888888889999999999999988654322 2223222 34444444444 55677777777777776
Q ss_pred CCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcC---ChHHHHHHHhcCChhHHHHHH
Q 011328 272 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG---IIGPLVNLLLNAEFEIKKEAA 348 (488)
Q Consensus 272 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~---~l~~L~~ll~~~~~~v~~~a~ 348 (488)
.+...+.++....+..+.+.++.+ +.++...|..++..+...++.....++..+ ++.....++.+++.-.|.+++
T Consensus 153 -~e~l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl 230 (335)
T PF08569_consen 153 -HESLAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL 230 (335)
T ss_dssp -SHHHHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred -hHHHHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence 455677788888888999999999 999999999999998876677766666543 577788889999999999999
Q ss_pred HHHHHhccCCCH--HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhh--c
Q 011328 349 WAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA--E 424 (488)
Q Consensus 349 ~aL~~l~~~~~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--g 424 (488)
..|+.+...... -..+++.+...+..++.+|+++...++-.|...+.-++....+... +...+..+ .
T Consensus 231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~---------I~~iL~~Nr~k 301 (335)
T PF08569_consen 231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPP---------IVDILIKNREK 301 (335)
T ss_dssp HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHH---------HHHHHHHTHHH
T ss_pred HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChH---------HHHHHHHHHHH
Confidence 999999865422 1245555667799999999999999999999888777665444332 45555433 2
Q ss_pred cHHHHHHhhcCC
Q 011328 425 GLEKIENLQSHD 436 (488)
Q Consensus 425 ~~~~L~~l~~~~ 436 (488)
.++.|.++..+.
T Consensus 302 Ll~fl~~f~~~~ 313 (335)
T PF08569_consen 302 LLRFLKDFHTDR 313 (335)
T ss_dssp HHHHHHTTTTT-
T ss_pred HHHHHHhCCCCC
Confidence 345555554443
No 146
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.51 E-value=0.018 Score=56.88 Aligned_cols=296 Identities=12% Similarity=0.101 Sum_probs=153.8
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHH
Q 011328 76 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL 155 (488)
Q Consensus 76 ~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 155 (488)
..++..-+ ++ ...+.-|+..|......-|+..+.. +..++.++++++..+|..|+..|..+|.+.++....+
T Consensus 26 ~~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv- 97 (556)
T PF05918_consen 26 KEILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV- 97 (556)
T ss_dssp HHHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-
T ss_pred HHHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-
Confidence 34444444 34 7899999999999999888877754 7899999999999999999999999999877654443
Q ss_pred hcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc---cCChhHHHHHHHHHHHhc-cCC
Q 011328 156 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---SNDDEVLTDACWALSYLS-DGT 231 (488)
Q Consensus 156 ~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~---~~~~~v~~~al~~L~~l~-~~~ 231 (488)
...|+++| ..+++.-...+-.+|..+...++ .+.+..+...+. +.++.+++.++..|..-. .-.
T Consensus 98 ----aDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~ 165 (556)
T PF05918_consen 98 ----ADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK 165 (556)
T ss_dssp ----HHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred ----HHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence 45788888 66666666666677776665431 344455555554 578889999998885432 222
Q ss_pred chhHH--HHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC----CchhhHHHhhCCChHHHHHHh------cccchh
Q 011328 232 NDKIQ--AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG----DDMQTQCIINHQALPCLLDLL------TQNYKK 299 (488)
Q Consensus 232 ~~~~~--~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~----~~~~~~~~~~~~~~~~L~~lL------~~~~~~ 299 (488)
.+... .-.+.-++..+.+.|.+-..+--...+.+|..+-.. .....+. +++.+.+.. ... ++
T Consensus 166 ~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qe-----Lv~ii~eQa~Ld~~f~~s-D~ 239 (556)
T PF05918_consen 166 PELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQE-----LVDIIEEQADLDQPFDPS-DP 239 (556)
T ss_dssp TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHH-----HHHHHHHHHTTTS---SS-SH
T ss_pred HHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHH-----HHHHHHHHhccCCCCCCc-CH
Confidence 11111 112223445566677664433344455566665541 1222222 233333222 112 23
Q ss_pred hHHHHHHHHHHH----Hhc--CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChH
Q 011328 300 SIKKEACWTISN----ITA--GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIK 373 (488)
Q Consensus 300 ~v~~~a~~~L~n----l~~--~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~ 373 (488)
+.-.....++.. ++. .+......+.+ .++|.+-.+ ..+.+...+.+++.++..........+++ .+..
T Consensus 240 e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L~-~i~~ 313 (556)
T PF05918_consen 240 ESIDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLLP-SIFQ 313 (556)
T ss_dssp HHHHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT----THHHHHH-HHHH
T ss_pred HHHHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHHH-HHHH
Confidence 333233333222 122 23344444444 477765554 45677788899998887764333333321 2333
Q ss_pred HHHhhcCCC--CH----HHHHHHHHHHHHHHHhhhh
Q 011328 374 PLCDLLNCP--DP----RIVTVCLEGLENILKAGEA 403 (488)
Q Consensus 374 ~L~~ll~~~--~~----~v~~~al~~L~~l~~~~~~ 403 (488)
.|...+-.. .+ ..++..+.+++++....+.
T Consensus 314 ~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~ 349 (556)
T PF05918_consen 314 LLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN 349 (556)
T ss_dssp HHHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred HHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence 343333322 22 3456777777777765443
No 147
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.51 E-value=0.0025 Score=47.47 Aligned_cols=93 Identities=17% Similarity=0.258 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhh
Q 011328 344 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 423 (488)
Q Consensus 344 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 423 (488)
|..++.+|..++..-......++- .++++++.++.++++.+|..|+++|.++.+..... +...|.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~--~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~-----------~l~~f~-- 67 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD--EILPPVLKCFDDQDSRVRYYACEALYNISKVARGE-----------ILPYFN-- 67 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH--HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH--
Confidence 566777887776655444444443 48999999999999999999999999998776532 233333
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011328 424 EGLEKIENLQSHDNTEIYEKAVKILETYW 452 (488)
Q Consensus 424 g~~~~L~~l~~~~~~~v~~~a~~~l~~~~ 452 (488)
..++.|-++..++++.|+..| .+|.++.
T Consensus 68 ~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 68 EIFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 347889999999999998776 5666554
No 148
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.51 E-value=0.0002 Score=47.37 Aligned_cols=55 Identities=31% Similarity=0.511 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011328 214 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 269 (488)
Q Consensus 214 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l 269 (488)
+.++..++++|++++...++..+... ..+++.|..+|.++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46899999999999888776666543 48899999999999999999999999875
No 149
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.45 E-value=0.18 Score=51.74 Aligned_cols=227 Identities=14% Similarity=0.152 Sum_probs=153.3
Q ss_pred CCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHH
Q 011328 126 SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPAL 205 (488)
Q Consensus 126 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l 205 (488)
.+..|.+...+.+++...+........... ..+...+..+..+..+.++..|+.+++..|. .........+++..+
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~L 535 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQPMILDGL 535 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccccchHHHHHH
Confidence 446777777888888877654322211111 2344556666566777888899999888883 233444557788888
Q ss_pred HHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC--CCCcchHhHHHHHHhHhhcCCchhhHHHhhC
Q 011328 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPALRTVGNIVTGDDMQTQCIINH 283 (488)
Q Consensus 206 ~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 283 (488)
.++......++......+|+.++..+++. ..-.+..+.|.++.+.. +++|.+...+-.++-.++.. ..+... ...
T Consensus 536 ~qlas~~s~evl~llmE~Ls~vv~~dpef-~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~g~-m~e 612 (1005)
T KOG2274|consen 536 LQLASKSSDEVLVLLMEALSSVVKLDPEF-AASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI-AANYGP-MQE 612 (1005)
T ss_pred HHHcccccHHHHHHHHHHHHHHhccChhh-hhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhhcc-hHH
Confidence 88888888999999999999999888765 34556677787777753 36777777777776666651 112111 233
Q ss_pred CChHHHHHHhcccch----hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH-hcCChhHHHHHHHHHHHhccCC
Q 011328 284 QALPCLLDLLTQNYK----KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL-LNAEFEIKKEAAWAISNATSGG 358 (488)
Q Consensus 284 ~~~~~L~~lL~~~~~----~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~ 358 (488)
..+|.++++|+.+ . ......++..|..+.++.+.-....+-..++|++.++. +++|...-+.+..||..+....
T Consensus 613 ~~iPslisil~~~-~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 613 RLIPSLISVLQLN-ADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred HHHHHHHHHHcCc-ccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 5789999999877 4 55667777888877774332233333334788888866 4457888899999999998875
Q ss_pred CH
Q 011328 359 SN 360 (488)
Q Consensus 359 ~~ 360 (488)
.+
T Consensus 692 ~e 693 (1005)
T KOG2274|consen 692 LE 693 (1005)
T ss_pred HH
Confidence 33
No 150
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.025 Score=56.36 Aligned_cols=162 Identities=19% Similarity=0.230 Sum_probs=106.1
Q ss_pred HHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHH
Q 011328 245 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 324 (488)
Q Consensus 245 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 324 (488)
+.+-+++.+.+|-+|...+.+++.--.++. ..+++..|+..--+..+.+||+.|+.+|+-++..+++
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~------ 588 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE------ 588 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChh------
Confidence 445566677788888877776654333322 2356677777744444999999999999999988777
Q ss_pred HcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 011328 325 EAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA 403 (488)
Q Consensus 325 ~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~ 403 (488)
..+..+++|..+ ++.||--++.+|+-.+.+..... ++..|..+.+++..-||+.|+-++.-++.....
T Consensus 589 ---~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~ 657 (929)
T KOG2062|consen 589 ---QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTE 657 (929)
T ss_pred ---hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhccc
Confidence 455666777665 89999999999998876543322 344555666677778899999888777543221
Q ss_pred hhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHH
Q 011328 404 EKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK 443 (488)
Q Consensus 404 ~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~ 443 (488)
. .++-...| .+.+.+...+.+++.-.+
T Consensus 658 ~--------~~pkv~~f-----rk~l~kvI~dKhEd~~aK 684 (929)
T KOG2062|consen 658 Q--------LCPKVNGF-----RKQLEKVINDKHEDGMAK 684 (929)
T ss_pred c--------cCchHHHH-----HHHHHHHhhhhhhHHHHH
Confidence 1 11112223 345667777766665433
No 151
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.42 E-value=0.019 Score=50.07 Aligned_cols=256 Identities=18% Similarity=0.227 Sum_probs=157.9
Q ss_pred HHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHH
Q 011328 75 VPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 153 (488)
Q Consensus 75 i~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (488)
+..+.+.|.+.+ ...-+..|+..|.++... +.+..+.+...+++...+...+.+|+.....
T Consensus 5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~-----------~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~------- 66 (289)
T KOG0567|consen 5 IETIGNILVNKSQPLQNRFRALFNLRNLLGP-----------AAIKAITKAFIDDSALLKHELAYVLGQMQDE------- 66 (289)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHhhhccCCh-----------HHHHHHHHhcccchhhhccchhhhhhhhccc-------
Confidence 344445554432 123455666666666551 2266666666666677777777777776422
Q ss_pred HHhcCChHHHHHHhcc-cccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc
Q 011328 154 VLSNGALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 232 (488)
Q Consensus 154 ~~~~~~l~~L~~ll~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~ 232 (488)
..++.++..+.. +..+-++..|..+|..+... ..++.+-++.+++-..|++.+..++..+-..+.
T Consensus 67 ----~Av~~l~~vl~desq~pmvRhEAaealga~~~~----------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~ 132 (289)
T KOG0567|consen 67 ----DAVPVLVEVLLDESQEPMVRHEAAEALGAIGDP----------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDI 132 (289)
T ss_pred ----hhhHHHHHHhcccccchHHHHHHHHHHHhhcch----------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhc
Confidence 356777777743 34566788899999887732 466777777777777888877777766643211
Q ss_pred hhH----HHH--------HHhCCHHHHHHhcCC-CCc-chHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccch
Q 011328 233 DKI----QAV--------IEAGVCPRLVELLRH-PSP-SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYK 298 (488)
Q Consensus 233 ~~~----~~~--------~~~~~l~~L~~lL~~-~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~ 298 (488)
... ... ...+-+..+-..+.+ ..+ --|..|++.|.|+-. + ..+..+.+-+..+ +
T Consensus 133 ~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--E---------eaI~al~~~l~~~-S 200 (289)
T KOG0567|consen 133 IDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--E---------EAINALIDGLADD-S 200 (289)
T ss_pred cccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--H---------HHHHHHHHhcccc-h
Confidence 000 000 000112222222222 111 123355555555422 1 2345567777777 8
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHH
Q 011328 299 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC 376 (488)
Q Consensus 299 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~ 376 (488)
.-.|.+++++++.+-+. . .++.|.+.|... ++-||..|+.||+.++. ++ +++.|.
T Consensus 201 alfrhEvAfVfGQl~s~--~---------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~---e~---------~~~vL~ 257 (289)
T KOG0567|consen 201 ALFRHEVAFVFGQLQSP--A---------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD---ED---------CVEVLK 257 (289)
T ss_pred HHHHHHHHHHHhhccch--h---------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC---HH---------HHHHHH
Confidence 88999999999998543 2 567777777654 78899999999999974 22 467778
Q ss_pred hhcCCCCHHHHHHHHHHHHHH
Q 011328 377 DLLNCPDPRIVTVCLEGLENI 397 (488)
Q Consensus 377 ~ll~~~~~~v~~~al~~L~~l 397 (488)
+.++++++-+++.|..+|..+
T Consensus 258 e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 258 EYLGDEERVVRESCEVALDML 278 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHHH
Confidence 889988888888888777644
No 152
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.41 E-value=0.0066 Score=51.47 Aligned_cols=93 Identities=24% Similarity=0.258 Sum_probs=75.6
Q ss_pred ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHH
Q 011328 213 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL 292 (488)
Q Consensus 213 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l 292 (488)
++.++..++.+++.++...+...+ ..++.+...|.++++.+|..|+.+|..|.....-.. +..++..++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHH
Confidence 578899999999999977665444 667899999999999999999999999987433221 23344778888
Q ss_pred hcccchhhHHHHHHHHHHHHhcC
Q 011328 293 LTQNYKKSIKKEACWTISNITAG 315 (488)
Q Consensus 293 L~~~~~~~v~~~a~~~L~nl~~~ 315 (488)
+.++ ++++|..|..++..+...
T Consensus 72 l~D~-~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDE-NPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCC-CHHHHHHHHHHHHHHHHh
Confidence 8888 999999999999999875
No 153
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.40 E-value=0.0083 Score=55.59 Aligned_cols=200 Identities=16% Similarity=0.209 Sum_probs=125.8
Q ss_pred HHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHh--hCCChHHHHHHhcccchhhHHHHHHHHHHHHhc--CCHHHH
Q 011328 245 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII--NHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQI 320 (488)
Q Consensus 245 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~ 320 (488)
...+..+.+.+...|..++..+..+...... ...+. ...++..+.+.++.+ ..+-+..|+.+++-++. +.....
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKG-KSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCCCccH
Confidence 3444555666688999999998888764321 12221 224677788888777 44555667676666654 223334
Q ss_pred HHHHHcCChHHHHHHHhcCC--hhHHHHHHHHHHHhccC--CCHHHHHHHHHCCChHHH--HhhcC----------CCCH
Q 011328 321 QAIIEAGIIGPLVNLLLNAE--FEIKKEAAWAISNATSG--GSNEQIKFLVSQGCIKPL--CDLLN----------CPDP 384 (488)
Q Consensus 321 ~~l~~~~~l~~L~~ll~~~~--~~v~~~a~~aL~~l~~~--~~~~~~~~l~~~~~i~~L--~~ll~----------~~~~ 384 (488)
..+++ .+.|.|.+.+.++. ..+|..++.+|+-++.. .+.+......+ .++.+ ....+ .+++
T Consensus 124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence 45555 37888888888763 45666777777666543 23333331111 23311 11222 1235
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 011328 385 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPL 461 (488)
Q Consensus 385 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~ 461 (488)
.+...|+.+..-++...+... +...+.+ .++.|..++.+++.+||..|...|.-+|+.-.+.+++
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~----------~~~~~~~--~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~ 265 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSK----------LEDLLEE--ALPALSELLDSDDVDVRIAAGEAIALLYELARDHEED 265 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHH----------HHHHHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhccccc
Confidence 788999999988887665422 2333333 3889999999999999999999999999887765555
No 154
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.39 E-value=0.0061 Score=49.32 Aligned_cols=127 Identities=13% Similarity=0.101 Sum_probs=102.8
Q ss_pred hHHHHHhcCChHHHHHHhccccc-----HhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC--ChhHHHHHHH
Q 011328 150 CRDLVLSNGALMPLLAQFNEHAK-----LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACW 222 (488)
Q Consensus 150 ~~~~~~~~~~l~~L~~ll~~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~v~~~al~ 222 (488)
+...+++.+++..|++++..+.. .++...++.++..|-......+......++..++.++... |..+...++.
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 34567788999999999965443 4778889999999988775666667778888898888754 6899999999
Q ss_pred HHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh
Q 011328 223 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 276 (488)
Q Consensus 223 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 276 (488)
.|-+++.+++.....+.+.=-++.|+.+|+..+++++..++..+..+....++.
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 999999988876676666566899999999999999999998888877655543
No 155
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.016 Score=55.94 Aligned_cols=230 Identities=16% Similarity=0.193 Sum_probs=134.5
Q ss_pred hHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc
Q 011328 89 QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN 168 (488)
Q Consensus 89 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~ 168 (488)
.++..++..++-+..++ .++ .+.+.+-.++..++.-.-+.|...++-+.-+.... + .+..+...-.
T Consensus 426 ~l~yG~~LGiGL~~MgS-an~------eiye~lKe~l~nD~a~~geAa~~gMGl~mLgt~s~-e------ai~dm~tya~ 491 (926)
T COG5116 426 ELAYGVCLGIGLINMGS-ANR------EIYEKLKELLKNDRALLGEAAVYGMGLLMLGTWSV-E------AIEDMRTYAG 491 (926)
T ss_pred HHHHHHHhhhcchhccc-ccH------HHHHHHHHHHhcchhhhhhhhhhccceeeecCCCH-H------HHHHHHHHhc
Confidence 55666655555444421 222 23466666777666666666666555544332210 1 2233333332
Q ss_pred ccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHH
Q 011328 169 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 248 (488)
Q Consensus 169 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~ 248 (488)
......+.+...-.+.-+.... ...+-..+.+++.+.++-++.....++..--..... .+++..++
T Consensus 492 ETqhe~i~Rglgig~aLi~ygr-------qe~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn-------~~vv~~lL 557 (926)
T COG5116 492 ETQHERIKRGLGIGFALILYGR-------QEMADDYINELLYDKDSILRYNGVFSLALAYVGTGN-------LGVVSTLL 557 (926)
T ss_pred chhhhhHHhhhhhhhhHhhhhh-------HHHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCc-------chhHhhhh
Confidence 2233334332222222211111 112233566777777777777766555432222111 25667777
Q ss_pred Hh-cCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 011328 249 EL-LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 327 (488)
Q Consensus 249 ~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 327 (488)
.. ..+.+.++|++|.-+|+-+|...+ ..+...+++|..++++.||...+.+|+-.+.+.....
T Consensus 558 h~avsD~nDDVrRAAViAlGfvc~~D~---------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~------- 621 (926)
T COG5116 558 HYAVSDGNDDVRRAAVIALGFVCCDDR---------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV------- 621 (926)
T ss_pred eeecccCchHHHHHHHHheeeeEecCc---------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------
Confidence 77 567888999999999999887544 4556677888777799999999999998887533221
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHH
Q 011328 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ 362 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~ 362 (488)
.+..|-.++.+...-||+.|+-+++-+...++++.
T Consensus 622 a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L 656 (926)
T COG5116 622 ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL 656 (926)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence 34455566777778899999999988876665443
No 156
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.32 E-value=0.01 Score=48.02 Aligned_cols=130 Identities=13% Similarity=0.107 Sum_probs=101.5
Q ss_pred HHHHHhCCHHHHHHhcCCCC------cchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccc-hhhHHHHHHHH
Q 011328 236 QAVIEAGVCPRLVELLRHPS------PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWT 308 (488)
Q Consensus 236 ~~~~~~~~l~~L~~lL~~~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~-~~~v~~~a~~~ 308 (488)
..+++.+++..|++++.++. .++...++.++..+..+.. ..-..+...++..+........ +..+...++..
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 45778899999999998755 2566678888888887643 2234556677888888887653 67899999999
Q ss_pred HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHH
Q 011328 309 ISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFL 366 (488)
Q Consensus 309 L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l 366 (488)
|-+++..++.....+.+.=-++.|+..|+..+.+++.+|...+..+...++++.++.+
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i 141 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI 141 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 9999998777676666666699999999999999999999999999887766555543
No 157
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.32 E-value=0.028 Score=52.10 Aligned_cols=197 Identities=13% Similarity=0.114 Sum_probs=125.2
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHH--HhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC--Cchhh
Q 011328 202 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI--EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG--DDMQT 277 (488)
Q Consensus 202 ~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~--~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~ 277 (488)
+...+..+.......|+.++..+..+.....- .+.+. ...++..+.+.++.+..+-+..|+.+++-++-. .....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 33445555666788999999999988754321 12222 124677888888887766677788877777654 22344
Q ss_pred HHHhhCCChHHHHHHhcccc-hhhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHH--HHhc----------CCh
Q 011328 278 QCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVN--LLLN----------AEF 341 (488)
Q Consensus 278 ~~~~~~~~~~~L~~lL~~~~-~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~--ll~~----------~~~ 341 (488)
..+++ .+.+.|.+++.+.. ...+|..++.+|+-++. ...+......+ .+..+.. ..+. +++
T Consensus 124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence 45554 57788888887652 34566666666665543 33444432222 2332211 1221 134
Q ss_pred hHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 011328 342 EIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA 403 (488)
Q Consensus 342 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~ 403 (488)
.+...|+.+.+-++...+........+ ..++.|..+|++++.+||..|-++|.-+++....
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 688888888888876555433333333 4689999999999999999999999988877663
No 158
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.32 E-value=0.00069 Score=41.51 Aligned_cols=39 Identities=38% Similarity=0.753 Sum_probs=35.8
Q ss_pred chhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhh
Q 011328 106 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144 (488)
Q Consensus 106 ~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~ 144 (488)
++.+..+.+.|+++.|++++.+++++++..++++|.|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347788889999999999999999999999999999986
No 159
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.30 E-value=0.0087 Score=50.75 Aligned_cols=92 Identities=14% Similarity=0.127 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHh
Q 011328 88 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF 167 (488)
Q Consensus 88 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll 167 (488)
+.+|..++.+++-++...+...+ ..++.+...|+++++.+|..|+.+|..|...+.- -.+...+..++..+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i----k~k~~l~~~~l~~l 72 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI----KVKGQLFSRILKLL 72 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce----eehhhhhHHHHHHH
Confidence 78999999999999985554443 3478999999999999999999999999754321 01112336777777
Q ss_pred cccccHhHHHHHHHHHHHhhcC
Q 011328 168 NEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 168 ~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
.+++++++..|..++..+...
T Consensus 73 -~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 -VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred -cCCCHHHHHHHHHHHHHHHHh
Confidence 888999999999999999876
No 160
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.27 E-value=0.00088 Score=41.01 Aligned_cols=39 Identities=46% Similarity=0.640 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011328 317 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 355 (488)
Q Consensus 317 ~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~ 355 (488)
++....+.+.|+++.|+.++.+++++++..++++|.|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 346777889999999999999989999999999999986
No 161
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.11 Score=45.61 Aligned_cols=224 Identities=16% Similarity=0.178 Sum_probs=140.4
Q ss_pred hHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCCchhHHH
Q 011328 160 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQA 237 (488)
Q Consensus 160 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~v~~~al~~L~~l~~~~~~~~~~ 237 (488)
+..+.+.. .+.+.-.+...+++|...... ..+|.++..+... .+-|+..|..+|+.+. ..
T Consensus 38 i~~i~ka~-~d~s~llkhe~ay~LgQ~~~~----------~Av~~l~~vl~desq~pmvRhEAaealga~~-~~------ 99 (289)
T KOG0567|consen 38 IKAITKAF-IDDSALLKHELAYVLGQMQDE----------DAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DP------ 99 (289)
T ss_pred HHHHHHhc-ccchhhhccchhhhhhhhccc----------hhhHHHHHHhcccccchHHHHHHHHHHHhhc-ch------
Confidence 44444444 333445556677777765543 5788899888754 6788899999999876 21
Q ss_pred HHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhh-------HH-----HhhCCChHHHHHHh-cccchhhHHHH
Q 011328 238 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT-------QC-----IINHQALPCLLDLL-TQNYKKSIKKE 304 (488)
Q Consensus 238 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-------~~-----~~~~~~~~~L~~lL-~~~~~~~v~~~ 304 (488)
+.++.+-+..+++...+++.+..++..+-....-.. .. -...+-+..+-..| +.....--|..
T Consensus 100 ----~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~ 175 (289)
T KOG0567|consen 100 ----ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYR 175 (289)
T ss_pred ----hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHh
Confidence 344566666667777888877777766643211000 00 00112233444433 33312334567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC--CC
Q 011328 305 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN--CP 382 (488)
Q Consensus 305 a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~--~~ 382 (488)
|.+.|.|+. ..+. +..+..-+..++.-.|.+++.+++.+-+.. .++.|.+.|. ..
T Consensus 176 amF~LRn~g--~Eea---------I~al~~~l~~~SalfrhEvAfVfGQl~s~~------------ai~~L~k~L~d~~E 232 (289)
T KOG0567|consen 176 AMFYLRNIG--TEEA---------INALIDGLADDSALFRHEVAFVFGQLQSPA------------AIPSLIKVLLDETE 232 (289)
T ss_pred hhhHhhccC--cHHH---------HHHHHHhcccchHHHHHHHHHHHhhccchh------------hhHHHHHHHHhhhc
Confidence 778887773 3443 444555566667788999999999996532 3455555554 35
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 011328 383 DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY 451 (488)
Q Consensus 383 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~ 451 (488)
++.+|..|+++|+.+..-. .++.|+++.+++.+-|++-+...++-+
T Consensus 233 ~pMVRhEaAeALGaIa~e~-----------------------~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 233 HPMVRHEAAEALGAIADED-----------------------CVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred chHHHHHHHHHHHhhcCHH-----------------------HHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 6789999999998764221 256788899999888998888888754
No 162
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.0069 Score=61.17 Aligned_cols=227 Identities=13% Similarity=0.103 Sum_probs=146.6
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHH
Q 011328 75 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV 154 (488)
Q Consensus 75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 154 (488)
....+..++++. +.+|..++..+..+.+.. +....+...+++...+..|++.++-+--+|...+..+|...++
T Consensus 729 ~qeai~sl~d~q-vpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e----- 801 (982)
T KOG4653|consen 729 LQEAISSLHDDQ-VPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE----- 801 (982)
T ss_pred HHHHHHHhcCCc-ccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch-----
Confidence 334445566666 789999999999999833 5666677789999999999999999999999999898865443
Q ss_pred HhcCChHHHHHHhccc---ccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011328 155 LSNGALMPLLAQFNEH---AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 231 (488)
Q Consensus 155 ~~~~~l~~L~~ll~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 231 (488)
..++.+...-... ..++.+-.+-.++.++...............+...+..+++++...|..++..+++++...
T Consensus 802 ---~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~ 878 (982)
T KOG4653|consen 802 ---DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLL 878 (982)
T ss_pred ---hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHH
Confidence 2455555532111 1123444455777776665444444445567777778888888888999999999998543
Q ss_pred chhHHHHHHhCCHHHHHHhcC-CCCcchHhHHHHHHhHhhcCCchhhHHHhh---CCChHHHHHHhcccchhhHHHHHHH
Q 011328 232 NDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIIN---HQALPCLLDLLTQNYKKSIKKEACW 307 (488)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~---~~~~~~L~~lL~~~~~~~v~~~a~~ 307 (488)
.-.....+ .+++..++.+.+ ++++.+|++|+..+..+..+.....-.+.. .+....+........+..+|..++.
T Consensus 879 a~~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql 957 (982)
T KOG4653|consen 879 AFQVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQL 957 (982)
T ss_pred hhhhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 32211111 134455555554 456789999999999998866543333221 1223333444433335556666665
Q ss_pred HHHHH
Q 011328 308 TISNI 312 (488)
Q Consensus 308 ~L~nl 312 (488)
++-.+
T Consensus 958 ~leei 962 (982)
T KOG4653|consen 958 CLEEI 962 (982)
T ss_pred HHHHH
Confidence 55433
No 163
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.056 Score=51.50 Aligned_cols=269 Identities=14% Similarity=0.118 Sum_probs=148.3
Q ss_pred CCCHHHHHHhh----CCCCHHHHHHHHHHHhhhhCCCch-hHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328 115 HGAVPIFVRLL----SSPTDDVREQAVWALGNVAGDSPK-CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 115 ~g~i~~L~~~L----~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
.|.+..++..+ .+++..+|..|++.|++.+...|. ++.. ..-.+..++..|.+..+.+|+-.+..+|..+...
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th--~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH--KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 34444444433 347889999999999999988443 2222 2235667777776777888999999888887765
Q ss_pred CCCCCh-hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc-hhHHHHHH--hCCHHHHHHhcCCCCcchHhHHHHH
Q 011328 190 KPQPLF-EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIE--AGVCPRLVELLRHPSPSVLIPALRT 265 (488)
Q Consensus 190 ~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~--~~~l~~L~~lL~~~~~~v~~~a~~~ 265 (488)
...... ...-++.-.+..+..+.+++.+..+...++.++.-.. .....+.+ .+....++-.+.++++.+. .||+.
T Consensus 331 ~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr~ 409 (533)
T KOG2032|consen 331 ASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACRS 409 (533)
T ss_pred hhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHHH
Confidence 422222 2223455566677788999999999998888874322 12222221 1233445555666666544 45666
Q ss_pred HhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHH-HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 011328 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK-EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK 344 (488)
Q Consensus 266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~-~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 344 (488)
....+.-+- .++.. ...+-+.+ ...-...+. ..-| ...+....++....+... ...++++.-+.++
T Consensus 410 ~~~~c~p~l-~rke~-----~~~~q~~l-d~~~~~~q~Fyn~~-c~~L~~i~~d~l~~~~t~-----~~~~f~sswe~vr 476 (533)
T KOG2032|consen 410 ELRTCYPNL-VRKEL-----YHLFQESL-DTDMARFQAFYNQW-CIQLNHIHPDILMLLLTE-----DQHIFSSSWEQVR 476 (533)
T ss_pred HHHhcCchh-HHHHH-----HHHHhhhh-HHhHHHHHHHHHHH-HHHHhhhCHHHHHHHHHh-----chhheecchHHHH
Confidence 555554221 11111 11111122 110111111 1111 112222234433322221 2223333333555
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 011328 345 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 399 (488)
Q Consensus 345 ~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~ 399 (488)
..+...-.+...+-.+....+..-..+...|..+...+-++++..+.+++..+..
T Consensus 477 ~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 477 EAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 5555555555554444444444333456677777888889999999999887754
No 164
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.063 Score=51.15 Aligned_cols=150 Identities=14% Similarity=0.187 Sum_probs=96.1
Q ss_pred HHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCChhHHHHHHHHHHHhccCCCH-HHHHHH
Q 011328 289 LLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-NAEFEIKKEAAWAISNATSGGSN-EQIKFL 366 (488)
Q Consensus 289 L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~-~~~~~l 366 (488)
+..-..++ +..+|..|+..|+|.+.+.|+........ .+..++.-|- ..+.+|..++..+|..+...... +...++
T Consensus 263 la~ka~dp-~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~ 340 (533)
T KOG2032|consen 263 LANKATDP-SAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYL 340 (533)
T ss_pred HHHhccCc-hhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhc
Confidence 33333556 77899999999999999755544444332 4555555444 44789999999999888754322 223333
Q ss_pred HHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHh--hccHHHHHHhhcCCCHHHHHHH
Q 011328 367 VSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDD--AEGLEKIENLQSHDNTEIYEKA 444 (488)
Q Consensus 367 ~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~~~L~~l~~~~~~~v~~~a 444 (488)
. ++.-.+..++++.+++++..+...++.+....... ++..|-+ .+....+.--+.++++.+..+.
T Consensus 341 l--~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~-----------~e~~Fte~v~k~~~~lllhl~d~~p~va~AC 407 (533)
T KOG2032|consen 341 L--NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGG-----------WEEFFTEQVKKRLAPLLLHLQDPNPYVARAC 407 (533)
T ss_pred h--hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCC-----------chhhhHHHHHhccccceeeeCCCChHHHHHH
Confidence 3 35667788899999999999999999887765432 2333322 1222233333567788877766
Q ss_pred HHHHHHhcC
Q 011328 445 VKILETYWV 453 (488)
Q Consensus 445 ~~~l~~~~~ 453 (488)
...+..+++
T Consensus 408 r~~~~~c~p 416 (533)
T KOG2032|consen 408 RSELRTCYP 416 (533)
T ss_pred HHHHHhcCc
Confidence 666655443
No 165
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.12 E-value=0.027 Score=56.72 Aligned_cols=239 Identities=15% Similarity=0.080 Sum_probs=154.2
Q ss_pred HHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHH-hhcCCCCCChhhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhc
Q 011328 151 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN-FCRGKPQPLFEQTRPALPALERLIHSN-DDEVLTDACWALSYLS 228 (488)
Q Consensus 151 ~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~-l~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~al~~L~~l~ 228 (488)
+...+..|+...++.+. ....+..+.....+|.. +.- ........++.+...+++. ...-...++.++.|++
T Consensus 497 ~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~~~i~f-----~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLa 570 (748)
T KOG4151|consen 497 RAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALAGKIDF-----PGERSYEVVKPLDSALHNDEKGLENFEALEALTNLA 570 (748)
T ss_pred cCccccccHHHHHHHHH-HHhchHHHHHHHHHHhhhcCC-----CCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhccc
Confidence 34455667888888887 44555666666666662 111 1111223444444444432 2233556888999999
Q ss_pred cCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhC-CChHHHHHHhcccchhhHHHHHHH
Q 011328 229 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH-QALPCLLDLLTQNYKKSIKKEACW 307 (488)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~L~~lL~~~~~~~v~~~a~~ 307 (488)
..+....+.+.+...++.+-..+..+++..+..++..+.||..+..-..+.+.+. ...+.....+... ......+++.
T Consensus 571 s~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a~ 649 (748)
T KOG4151|consen 571 SISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGAG 649 (748)
T ss_pred CcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhccc
Confidence 8776666668887777777778888899999999999999998766555555553 3444444455554 7777777777
Q ss_pred HHHHHhcCCHHHHHH-HHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHH
Q 011328 308 TISNITAGNVNQIQA-IIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRI 386 (488)
Q Consensus 308 ~L~nl~~~~~~~~~~-l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 386 (488)
++..+..-...++.. .--......+..++.+.+..++...+....|+. ....+....+.+...++.+...-+......
T Consensus 650 a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~-~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~ 728 (748)
T KOG4151|consen 650 ALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLF-EALFEIAEKIFETEVMELLSGLQKLNRAPK 728 (748)
T ss_pred cccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHH-HHHHHHHHHhccchHHHHHHHHHHhhhhhh
Confidence 777665533333332 222347788889999999999999999999954 445566667666666666666555444444
Q ss_pred HHHHHHHHHHH
Q 011328 387 VTVCLEGLENI 397 (488)
Q Consensus 387 ~~~al~~L~~l 397 (488)
+..+..+|...
T Consensus 729 ~~~~~~~l~~a 739 (748)
T KOG4151|consen 729 REDAAPCLSAA 739 (748)
T ss_pred hhhhhhHHHHH
Confidence 44444444433
No 166
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.10 E-value=0.0066 Score=61.73 Aligned_cols=216 Identities=18% Similarity=0.168 Sum_probs=140.2
Q ss_pred CCHHHHHHHHHHHhhhh-----CCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCC---------CC
Q 011328 128 PTDDVREQAVWALGNVA-----GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP---------QP 193 (488)
Q Consensus 128 ~~~~v~~~a~~~L~~l~-----~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~---------~~ 193 (488)
++.+.++.|+..+.-+. +++++. ..+...++..| +++++-..+..++.-+..+.+ ..
T Consensus 786 gs~dls~~al~~l~Wv~KaLl~R~~~~s------~~ia~klld~L---s~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~ 856 (1030)
T KOG1967|consen 786 GSLDLSEIALTVLAWVTKALLLRNHPES------SEIAEKLLDLL---SGPSTGSPAAKLFSIIMSDSNPLLKRKGHAEP 856 (1030)
T ss_pred CCcchhhHHHHHHHHHHHHHHHcCCccc------chHHHHHHHhc---CCccccchHHHhhHhhhccChHHhhhccccch
Confidence 34555666665554442 333321 11344566666 234444555555555544331 11
Q ss_pred Ch----hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHH--hCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011328 194 LF----EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE--AGVCPRLVELLRHPSPSVLIPALRTVG 267 (488)
Q Consensus 194 ~~----~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~v~~~a~~~L~ 267 (488)
.. .....++|.+++.+.+.+...+..-+.+|.++..+-+.. .+.. ..++|.|++.|.-++..+|..++.++.
T Consensus 857 riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~--vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~ 934 (1030)
T KOG1967|consen 857 RILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQ--VLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIP 934 (1030)
T ss_pred hHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHH--hhccchhhHHHHHHHhcCCCccchhhhHhhhhh
Confidence 11 223678899999998777888888888898888766542 2222 267888999999999999999999999
Q ss_pred HhhcCCchhhHHHhhCCChHHHHHHhcccch--hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHH
Q 011328 268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYK--KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK 345 (488)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~--~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~ 345 (488)
.+....+.....-.. .+++.++.+=.+..+ ..+|..|+.++..+.+.-|...-......++..|...|.++..-||+
T Consensus 935 ~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~ 1013 (1030)
T KOG1967|consen 935 MLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRK 1013 (1030)
T ss_pred HHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHH
Confidence 888765544333222 467777776666522 67999999999999983233222333445788888899998888999
Q ss_pred HHHHHHHHhc
Q 011328 346 EAAWAISNAT 355 (488)
Q Consensus 346 ~a~~aL~~l~ 355 (488)
+|..+=.+..
T Consensus 1014 eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 1014 EAVDTRQNWY 1023 (1030)
T ss_pred HHHHHhhhhh
Confidence 9987755543
No 167
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.08 E-value=0.22 Score=49.47 Aligned_cols=179 Identities=15% Similarity=0.125 Sum_probs=111.2
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
+....++..-+ ++...+..|+..+.+....- ++.. ..++..++.|+.+.+ ..||..|++.|-.+|.++++..
T Consensus 23 ~~y~~il~~~k-g~~k~K~Laaq~I~kffk~F-P~l~-----~~Ai~a~~DLcEDed-~~iR~~aik~lp~~ck~~~~~v 94 (556)
T PF05918_consen 23 EDYKEILDGVK-GSPKEKRLAAQFIPKFFKHF-PDLQ-----EEAINAQLDLCEDED-VQIRKQAIKGLPQLCKDNPEHV 94 (556)
T ss_dssp HHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC--GGGH-----HHHHHHHHHHHT-SS-HHHHHHHHHHGGGG--T--T-H
T ss_pred HHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhC-hhhH-----HHHHHHHHHHHhccc-HHHHHHHHHhHHHHHHhHHHHH
Confidence 34455666655 57889999999999988765 3333 246789999999999 8999999999999999888877
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc--ccccHhHHHHHHHHHHHhh
Q 011328 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN--EHAKLSMLRNATWTLSNFC 187 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~~~v~~~a~~~L~~l~ 187 (488)
..+ ...|.++|.++++.-...+-.+|..+...++. +.+..++..+. ..+++.+++.++..|..=.
T Consensus 95 ~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl 161 (556)
T PF05918_consen 95 SKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREKL 161 (556)
T ss_dssp HHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHG
T ss_pred hHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence 766 58899999998877777777777777644432 24556666663 2567789999988775433
Q ss_pred cCC--CCCC--hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 011328 188 RGK--PQPL--FEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 229 (488)
Q Consensus 188 ~~~--~~~~--~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~ 229 (488)
..- .... .....-++..+-+.|.+-...--...+.+|..+-.
T Consensus 162 ~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~ 207 (556)
T PF05918_consen 162 KPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKI 207 (556)
T ss_dssp GGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG
T ss_pred hhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCcc
Confidence 322 1112 23344555666667765444444445555555544
No 168
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.08 E-value=0.19 Score=46.71 Aligned_cols=171 Identities=15% Similarity=0.151 Sum_probs=113.9
Q ss_pred chHHHHH-HhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch-hh
Q 011328 200 PALPALE-RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM-QT 277 (488)
Q Consensus 200 ~~~~~l~-~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~ 277 (488)
+.+..++ ..+++.+..++..++.+++-.+--+.+... ..++.+...+..+++.++..|+.++..+...... ..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 5555444 788899999999999999998866543333 4456777777777889999999999988753321 11
Q ss_pred HH-------HhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC----ChhHHHH
Q 011328 278 QC-------IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA----EFEIKKE 346 (488)
Q Consensus 278 ~~-------~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~----~~~v~~~ 346 (488)
.. .....+.+.+.+.+.+. +++++..|+..++.|...+.-.- ...++..|+-..-++ +..+|+.
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 11 11235778888899888 88999999999999876311100 112444555555444 4567766
Q ss_pred HHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC
Q 011328 347 AAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP 382 (488)
Q Consensus 347 a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~ 382 (488)
-...+-..+... ++. +......+++.+..+.+..
T Consensus 176 L~~Ffp~y~~s~-~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 176 LSVFFPVYASSS-PEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHcCC-HHH-HHHHHHHHHHHHHHHHhCc
Confidence 666666666644 333 3445557778777777653
No 169
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=97.08 E-value=0.031 Score=53.29 Aligned_cols=222 Identities=13% Similarity=0.130 Sum_probs=135.3
Q ss_pred HHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC-chhHHHHHhcCChHHHHHHhcccc
Q 011328 93 EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHA 171 (488)
Q Consensus 93 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~ 171 (488)
.|++.|-.+....+..-..+.+.+++..++..++.+-....+. .-...-.... ++.+..... ...+ ...
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~i-~~~ 72 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVD-------GYSI-SYQ 72 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCccccccc-------cccc-CHH
Confidence 4667777777766777778888999999999886532222221 0000000000 000000000 0000 111
Q ss_pred cHhHHHHHHHHHHHhhc-CC---CCCChhhh-hchHHHHHHhhccC---ChhHHHHHHHHHHHhccCCchhHHHHHHhCC
Q 011328 172 KLSMLRNATWTLSNFCR-GK---PQPLFEQT-RPALPALERLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAGV 243 (488)
Q Consensus 172 ~~~v~~~a~~~L~~l~~-~~---~~~~~~~~-~~~~~~l~~ll~~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~ 243 (488)
.....+..+.++..+.. +. ....-... ...+..|..++++. -+.+...++..+..+..+.+.....+.+.|+
T Consensus 73 r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl 152 (379)
T PF06025_consen 73 RQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGL 152 (379)
T ss_pred HHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCC
Confidence 22334455555555555 22 11222233 45666777777765 4788999999999999999988898999999
Q ss_pred HHHHHHhcC-C---CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhh------HHHHHHHHHHHHh
Q 011328 244 CPRLVELLR-H---PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS------IKKEACWTISNIT 313 (488)
Q Consensus 244 l~~L~~lL~-~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~------v~~~a~~~L~nl~ 313 (488)
.+.+++.+. . ++.++....-.+++.+|- +....+.+.+.+.++.+++++.++.... .-......+-.|.
T Consensus 153 ~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~ 231 (379)
T PF06025_consen 153 IDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELM 231 (379)
T ss_pred hHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHH
Confidence 999999988 4 345666677778888887 5556777888899999999998763221 1122233444566
Q ss_pred cCCHHHHHHHHH
Q 011328 314 AGNVNQIQAIIE 325 (488)
Q Consensus 314 ~~~~~~~~~l~~ 325 (488)
++.+..+..+++
T Consensus 232 RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 232 RHHPSLKPDIID 243 (379)
T ss_pred ccCHHHHHHHHH
Confidence 676766555554
No 170
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.04 E-value=0.041 Score=47.43 Aligned_cols=143 Identities=13% Similarity=0.177 Sum_probs=103.6
Q ss_pred HHH-HHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCC----CChhHHHHHHHHHHHhcC-CCchhhHHHHhCCCHH
Q 011328 46 IQL-DATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD----DFPQLQFEAAWALTNIAS-GTSENTRVVIDHGAVP 119 (488)
Q Consensus 46 ~~~-~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~----~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~ 119 (488)
-|. .|+..|..+++ + ++....+.+..+--.+-.+|... ..+.+|..++.+++.+.. ++.+....+...+++|
T Consensus 94 nRVcnaL~LlQcvAS-H-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP 171 (293)
T KOG3036|consen 94 NRVCNALALLQCVAS-H-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP 171 (293)
T ss_pred chHHHHHHHHHHHhc-C-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence 344 44555555554 4 67788888877766666666532 237799999999999998 4456677788999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhc-------CChHHHHHHhcccccHhHHHHHHHHHHHhhcCC
Q 011328 120 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN-------GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 190 (488)
Q Consensus 120 ~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-------~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~ 190 (488)
..++.++.+++..+..|..++..+..++.+........ ..+..++..+.+.++..+..+++.+..+|+.+.
T Consensus 172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 99999999999999999999999987766543222111 134445555556678888889999998888774
No 171
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.1 Score=52.22 Aligned_cols=295 Identities=16% Similarity=0.083 Sum_probs=165.5
Q ss_pred HHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCC-------CChhHHHHHHHHHHHhcC--CCchhhHHHHhCCCHHH
Q 011328 50 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-------DFPQLQFEAAWALTNIAS--GTSENTRVVIDHGAVPI 120 (488)
Q Consensus 50 a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~-------~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~ 120 (488)
|+..+....++....+ -.|+++.+...|... +++.-.+.|++.++++.. ..+....-+++.=+++.
T Consensus 390 al~fl~~~~sKrke~T-----fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~h 464 (970)
T COG5656 390 ALFFLIISKSKRKEET-----FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNH 464 (970)
T ss_pred HHHHHHHHhcccchhh-----hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 5555555554432221 247889999888321 234556778888888765 33344444556566788
Q ss_pred HHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhh--
Q 011328 121 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT-- 198 (488)
Q Consensus 121 L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-- 198 (488)
++..++++.--++..|+..++.+..+-+ +...-..+.+...+.+ ++++-.++..|+.++..+..+. ......
T Consensus 465 v~P~f~s~ygfL~Srace~is~~eeDfk---d~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~--q~h~k~sa 538 (970)
T COG5656 465 VIPAFRSNYGFLKSRACEFISTIEEDFK---DNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNE--QSHEKFSA 538 (970)
T ss_pred hhHhhcCcccchHHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhch--hhhHHHHh
Confidence 8888899889999999999999954432 2222333556666777 5577889999999999888775 222222
Q ss_pred --hchHHHHHHhhccCChhHHHHHHHHHHH-hccCCchhHHHHHHh---CCHHHHHHhcCCCC------cchHhHHHHHH
Q 011328 199 --RPALPALERLIHSNDDEVLTDACWALSY-LSDGTNDKIQAVIEA---GVCPRLVELLRHPS------PSVLIPALRTV 266 (488)
Q Consensus 199 --~~~~~~l~~ll~~~~~~v~~~al~~L~~-l~~~~~~~~~~~~~~---~~l~~L~~lL~~~~------~~v~~~a~~~L 266 (488)
.+.++.++.+-+.-+.++...++..+.. .+..-......+... ..+.....++.+++ ++-+..|.++|
T Consensus 539 hVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL 618 (970)
T COG5656 539 HVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGIL 618 (970)
T ss_pred hhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHH
Confidence 3333333333333355555555544432 222111111112110 22223333443321 23334455555
Q ss_pred hHhhc---C--CchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCh
Q 011328 267 GNIVT---G--DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF 341 (488)
Q Consensus 267 ~~l~~---~--~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~ 341 (488)
..+.. . +....-.-++....|.+--++++. -.++-.+|+..+-++.....+.- -+.-|+.+.+.+++.+...
T Consensus 619 ~T~~smiLSlen~p~vLk~le~slypvi~Filkn~-i~dfy~Ea~dildg~tf~skeI~--pimwgi~Ell~~~l~~~~t 695 (970)
T COG5656 619 RTIESMILSLENRPLVLKYLEVSLYPVISFILKNE-ISDFYQEALDILDGYTFMSKEIE--PIMWGIFELLLNLLIDEIT 695 (970)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHHhh--hhhhHHHHHHHhcccccch
Confidence 44432 1 111111223445667777777777 77788888888887765423321 1223455555555555543
Q ss_pred -hHHHHHHHHHHHhccCC
Q 011328 342 -EIKKEAAWAISNATSGG 358 (488)
Q Consensus 342 -~v~~~a~~aL~~l~~~~ 358 (488)
.-.+.+.-++.|+...+
T Consensus 696 ~~y~ee~~~al~nfityG 713 (970)
T COG5656 696 AVYSEEVADALDNFITYG 713 (970)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 55678888999998766
No 172
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.023 Score=57.64 Aligned_cols=225 Identities=12% Similarity=0.142 Sum_probs=143.8
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhh
Q 011328 119 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 198 (488)
Q Consensus 119 ~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 198 (488)
..-+..++++...++..++..+..+.+... ....+...+++...+..+ ++.|+-+.-+|...+..||.-. .
T Consensus 730 qeai~sl~d~qvpik~~gL~~l~~l~e~r~-~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcevy-------~ 800 (982)
T KOG4653|consen 730 QEAISSLHDDQVPIKGYGLQMLRHLIEKRK-KATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEVY-------P 800 (982)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHhc-------c
Confidence 334445556778889999999999987543 345566667888888999 7888888889999888888653 2
Q ss_pred hchHHHHHHhhcc-C---ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCc
Q 011328 199 RPALPALERLIHS-N---DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 274 (488)
Q Consensus 199 ~~~~~~l~~ll~~-~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 274 (488)
..++|.+.+.-.+ . ..+.+..+-.++.++...-.+....... -++..++...++++...|..++..+++++....
T Consensus 801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a 879 (982)
T KOG4653|consen 801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLA 879 (982)
T ss_pred hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence 4567777764322 2 1234444456666666544433332332 566778888888888889999999999997554
Q ss_pred hhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHH---HcCChHHHHHHHhcC-ChhHHHHHHHH
Q 011328 275 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII---EAGIIGPLVNLLLNA-EFEIKKEAAWA 350 (488)
Q Consensus 275 ~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~---~~~~l~~L~~ll~~~-~~~v~~~a~~a 350 (488)
......+. .+...++.+.+.+...-+|+.|+..+..+..+.....-.+. .......+....... +..++..|..+
T Consensus 880 ~~vsd~~~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~ 958 (982)
T KOG4653|consen 880 FQVSDFFH-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLC 958 (982)
T ss_pred hhhhHHHH-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 33332222 35566666666665889999999999999875433222222 112333333333333 44466666655
Q ss_pred HHHh
Q 011328 351 ISNA 354 (488)
Q Consensus 351 L~~l 354 (488)
+..+
T Consensus 959 leei 962 (982)
T KOG4653|consen 959 LEEI 962 (982)
T ss_pred HHHH
Confidence 5444
No 173
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.01 E-value=0.077 Score=49.26 Aligned_cols=171 Identities=16% Similarity=0.126 Sum_probs=110.6
Q ss_pred CCHHHHH-HhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC-chh
Q 011328 73 GVVPRFI-EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKC 150 (488)
Q Consensus 73 ~~i~~L~-~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~ 150 (488)
+.++.|+ ..+++.+ +.+|..|+++|+-.+--+.+..... ++.+...++.++..++..|+.++..+.... ...
T Consensus 26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~~~-----l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAKEH-----LPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHHHH-----HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 4454444 6678888 8999999999999988555444333 677778787789999999999999886321 111
Q ss_pred HHH-------HHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcc----CChhHHHH
Q 011328 151 RDL-------VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS----NDDEVLTD 219 (488)
Q Consensus 151 ~~~-------~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~----~~~~v~~~ 219 (488)
-+. ......+..+.+.+ .+.++.++..++..++.|.-...... ...++..|+-+.-+ ++..++..
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 111 11123455666666 56688999999999999887653222 23344444433322 34667776
Q ss_pred HHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC
Q 011328 220 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 254 (488)
Q Consensus 220 al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 254 (488)
.-..+-..+...... +..+...+++.+..+....
T Consensus 176 L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 176 LSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence 666777777666655 3455556677777766543
No 174
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.98 E-value=0.13 Score=51.40 Aligned_cols=108 Identities=19% Similarity=0.187 Sum_probs=80.8
Q ss_pred hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh
Q 011328 197 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 276 (488)
Q Consensus 197 ~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 276 (488)
.+.+.+..+++...+++..|+..++..|..+.......-+ .+-.++...+..-+.+..|.||..|+.+|+.+=......
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd-~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDD-DVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCH-HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 5567777788888889999999999999998875433323 333367777888888888999999999999986321111
Q ss_pred hHHHhhCCChHHHHHHhcccchhhHHHHHHHHHH
Q 011328 277 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 310 (488)
Q Consensus 277 ~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~ 310 (488)
+..+...+..+++...+++||+.|+..+.
T Consensus 161 -----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 -----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred -----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 23567778888887779999998776554
No 175
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.97 E-value=0.017 Score=58.18 Aligned_cols=243 Identities=14% Similarity=0.068 Sum_probs=159.9
Q ss_pred CchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHh-hhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHH
Q 011328 105 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG-NVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL 183 (488)
Q Consensus 105 ~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~-~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L 183 (488)
...-+...++.|+...|+++.....+..+.....+|. .+...... ....++++...+..+....-...++.++
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E~L~al 566 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFEALEAL 566 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence 3444555678899999999988877888877888887 33221111 1124555555553333222334677788
Q ss_pred HHhhcCCC-CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHhcCCCCcchHhH
Q 011328 184 SNFCRGKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRHPSPSVLIP 261 (488)
Q Consensus 184 ~~l~~~~~-~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~v~~~ 261 (488)
.||+.... ..........++.+-.++..+++..+..++..+.|+...+.-....+.+. ..++.....+....+....+
T Consensus 567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA 646 (748)
T KOG4151|consen 567 TNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELA 646 (748)
T ss_pred hcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhh
Confidence 88887663 33334445566666777788899999999999999998776555555553 44555555565556666666
Q ss_pred HHHHHhHhhcCCchhhH-HHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC
Q 011328 262 ALRTVGNIVTGDDMQTQ-CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE 340 (488)
Q Consensus 262 a~~~L~~l~~~~~~~~~-~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~ 340 (488)
++.++..++........ ..--......+..++.+. +..++...+..+.|+.....+....++....++.+..+-....
T Consensus 647 ~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~ 725 (748)
T KOG4151|consen 647 GAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNR 725 (748)
T ss_pred ccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 66666655554443333 223346788899999999 9999999999999976666777777777777777766655544
Q ss_pred hhHHHHHHHHHHHh
Q 011328 341 FEIKKEAAWAISNA 354 (488)
Q Consensus 341 ~~v~~~a~~aL~~l 354 (488)
...++.+..+|...
T Consensus 726 a~~~~~~~~~l~~a 739 (748)
T KOG4151|consen 726 APKREDAAPCLSAA 739 (748)
T ss_pred hhhhhhhhhHHHHH
Confidence 45555555555443
No 176
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.87 E-value=0.069 Score=47.03 Aligned_cols=187 Identities=12% Similarity=0.154 Sum_probs=119.0
Q ss_pred CChhHHHHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHh-------cCCCC--c---chHhHHHHHHhHhhcCCchhhH
Q 011328 212 NDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVEL-------LRHPS--P---SVLIPALRTVGNIVTGDDMQTQ 278 (488)
Q Consensus 212 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~l-------L~~~~--~---~v~~~a~~~L~~l~~~~~~~~~ 278 (488)
.+++.++.|+.-|+.--+..++..-.+... |.+..|++= +..+. . .-.-.|+..+..++. .++.+.
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~ 85 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRM 85 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHH
T ss_pred cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHH
Confidence 356778888877776665555554444443 545444332 22221 1 122245555666666 566778
Q ss_pred HHhhCCChHHHHHHhccc----chhhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHH
Q 011328 279 CIINHQALPCLLDLLTQN----YKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 353 (488)
Q Consensus 279 ~~~~~~~~~~L~~lL~~~----~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~ 353 (488)
.++++++.-.+..+|+.. ..+.+|-.++++++.+.. .+++.+..+.+..++|..++.++.++.-.|..|...+..
T Consensus 86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 888988888888888543 246788999999999998 568888889999999999999999988888999999999
Q ss_pred hccCCCHHHHHHHHHC--------CChHHHH-hhcCCCCHHHHHHHHHHHHHHHHhh
Q 011328 354 ATSGGSNEQIKFLVSQ--------GCIKPLC-DLLNCPDPRIVTVCLEGLENILKAG 401 (488)
Q Consensus 354 l~~~~~~~~~~~l~~~--------~~i~~L~-~ll~~~~~~v~~~al~~L~~l~~~~ 401 (488)
+.... ....++.+. .++..++ .+.+.+++.+.++++.+..++....
T Consensus 166 IL~dd--~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 166 ILLDD--VGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHHSH--HHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HHcch--hHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 88643 333333221 1222222 2344667777777777777665443
No 177
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.84 E-value=0.0073 Score=45.01 Aligned_cols=68 Identities=16% Similarity=0.235 Sum_probs=57.4
Q ss_pred hHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhc-ccchhhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011328 258 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQIQAIIE 325 (488)
Q Consensus 258 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 325 (488)
.+...+.+|++++..++.....+.+.++++.+++.-. ++.+|-+|+.|.+++.|++.+++++...+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4677899999999999988888899999999998653 3338999999999999999998888766654
No 178
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.80 E-value=0.043 Score=57.70 Aligned_cols=147 Identities=18% Similarity=0.182 Sum_probs=116.8
Q ss_pred hhhhchHHHHHHhhcc----CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC-CCCcchHhHHHHHHhHhh
Q 011328 196 EQTRPALPALERLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIV 270 (488)
Q Consensus 196 ~~~~~~~~~l~~ll~~----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~ 270 (488)
.....+.|.+++..++ .++.++..|.-+|+.+..-+..... .-++.|+..+. +++|.+|..+.-+++.++
T Consensus 915 ~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDla 989 (1251)
T KOG0414|consen 915 SLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLA 989 (1251)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchh
Confidence 3446778888888854 5799999999999998765543332 55788999997 789999999999999999
Q ss_pred cCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHH
Q 011328 271 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA 350 (488)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~a 350 (488)
...+.... .+-+.|...|.++ ++.+|+.|..++++|...+- +--.|.++.+..++.+++..++.-|-..
T Consensus 990 v~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILndm-----iKVKGql~eMA~cl~D~~~~IsdlAk~F 1058 (1251)
T KOG0414|consen 990 VRFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILNDM-----IKVKGQLSEMALCLEDPNAEISDLAKSF 1058 (1251)
T ss_pred hhcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhh-----hHhcccHHHHHHHhcCCcHHHHHHHHHH
Confidence 87765543 4567899999999 99999999999999987522 2235889999999999999999888877
Q ss_pred HHHhccCC
Q 011328 351 ISNATSGG 358 (488)
Q Consensus 351 L~~l~~~~ 358 (488)
...++..+
T Consensus 1059 F~Els~k~ 1066 (1251)
T KOG0414|consen 1059 FKELSSKG 1066 (1251)
T ss_pred HHHhhhcc
Confidence 77776554
No 179
>PRK14707 hypothetical protein; Provisional
Probab=96.78 E-value=0.93 Score=51.29 Aligned_cols=420 Identities=15% Similarity=0.101 Sum_probs=217.8
Q ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhc-CCCChhHHHHHHHHHHHhcCCCchh
Q 011328 32 LPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS-RDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 32 i~~l~~~L~s--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
+..+++..+. ++.+-+..+.+...- ++.+ ....+.+-. -.|-.+++-+. =+++++.+..+...-..++. ....
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~-~~~~-d~~~~~~~~-q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l 240 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAAL-VASD-DRLRSAMDA-QGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRL 240 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHH-hcCC-hhhhcccch-HHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHH
Confidence 3445555542 455555444443333 4333 222333322 33444444443 34546666555555555555 5555
Q ss_pred hHHHHhCCCHHHHHHhhCC-CCH-HHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHH-H
Q 011328 109 TRVVIDHGAVPIFVRLLSS-PTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS-N 185 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~~L~~-~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~-~ 185 (488)
+..+-..| +-..+..|.. ++. ..+..+..+-..++ +.+..++.+-. ..+...++-|.+..+..+...+...|. .
T Consensus 241 ~~~~~~q~-va~~lN~lsKwp~~~~C~~a~~~lA~rl~-~~~~l~~al~~-q~vanalNalSKwpd~~vc~~Aa~~la~r 317 (2710)
T PRK14707 241 RNELKPQE-LGNALNALSKWADTPVCAAAASALAERLV-DDPGLRKALDP-INVTQALNALSKWADLPVCAEAAIALAER 317 (2710)
T ss_pred HHhCChHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHh-hhHHHHHhcCH-HHHHHHHhhhhcCCCchHHHHHHHHHHHH
Confidence 55554445 4444454544 444 44444444444454 44444444332 234455555657777777766666554 4
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHH
Q 011328 186 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALR 264 (488)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~ 264 (488)
|..+......+...++-..|..+-+-++..+-..+...|..-...+++..+ -++..++...++.+.. ++..+-..+..
T Consensus 318 l~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~-~l~~q~~a~~lNalsKWp~~~~c~~aa~ 396 (2710)
T PRK14707 318 LADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRK-DLEPQGVSSVLNALSKWPDTPVCAAAAS 396 (2710)
T ss_pred HhccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhc-ccchhHHHHHHhhhhcCCCchHHHHHHH
Confidence 554332222222233333333333446666666666666544444444433 2333455666666654 55555556666
Q ss_pred HHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 011328 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK 344 (488)
Q Consensus 265 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 344 (488)
.|..-.....+..+.+ +...+...+.-|..-.+..+...++..|.--..++.+.++.+--.++...|-.+-+-+|..+.
T Consensus 397 ~LA~~l~~d~~l~~~~-~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c 475 (2710)
T PRK14707 397 ALAEHVVDDLELRKGL-DPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPIC 475 (2710)
T ss_pred HHHHHhccChhhhhhc-chhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhH
Confidence 6655544455554444 444555555555543377777777777776666667766655545555555555566788888
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHH-HHHHHHHHhhhhhhccCCCCccchHHHHHHhh
Q 011328 345 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCL-EGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 423 (488)
Q Consensus 345 ~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al-~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 423 (488)
..++..|..-... +++..+.|--.++...|-.+-+.++......++ ++-..+. .... ....|...
T Consensus 476 ~~aa~~La~~l~~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~-~~~~------------l~~~~~~~ 541 (2710)
T PRK14707 476 GQTASALAARLAH-ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVV-DELQ------------LRKAFDAH 541 (2710)
T ss_pred HHHHHHHHHHhcc-cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhc-cchh------------hhhhhhhH
Confidence 8777777665543 345555555556666676777777755333333 2222332 1111 24445555
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCC
Q 011328 424 EGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGF 485 (488)
Q Consensus 424 g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (488)
+....+..+...++...-..+..-|...+..+ ++..=.|++|+++.--|.|
T Consensus 542 ~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~-----------~~~~~~L~aq~Vs~llNaL 592 (2710)
T PRK14707 542 QVVNTLKALSKWPDKQLCAVAASGLAERLADE-----------PQLPKDLHRQGVVIVLNAL 592 (2710)
T ss_pred HHHHHHHhhhcCCchhHHHHHHHHHHHHhhcc-----------hhhHHhhhhhHHHHHHHhh
Confidence 55666777776665554444443443333211 2233456677766554444
No 180
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.76 E-value=0.0066 Score=46.50 Aligned_cols=70 Identities=19% Similarity=0.330 Sum_probs=57.1
Q ss_pred ChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHH
Q 011328 371 CIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE 449 (488)
Q Consensus 371 ~i~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~ 449 (488)
++..|+++|. +.|+.+...|+.-|+.+++.-+.. +..+.+.|+-+.+.+|++++|++|+..|...+.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g------------r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ 111 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG------------RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQ 111 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG------------HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhH------------HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4778888884 457778888999999999887643 777899999999999999999999999999988
Q ss_pred Hhc
Q 011328 450 TYW 452 (488)
Q Consensus 450 ~~~ 452 (488)
.+.
T Consensus 112 klm 114 (119)
T PF11698_consen 112 KLM 114 (119)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 181
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.71 E-value=0.025 Score=59.36 Aligned_cols=160 Identities=21% Similarity=0.262 Sum_probs=124.0
Q ss_pred CCHHHHHHhhcC----CCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHhhhhCCC
Q 011328 73 GVVPRFIEFLSR----DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDS 147 (488)
Q Consensus 73 ~~i~~L~~lL~~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~-~~~~~v~~~a~~~L~~l~~~~ 147 (488)
.+.|.+++..+. ++ |++|..|.-+|+.+..-+.+.... -++.|+..+. ++++.+|.++.-+++.++..-
T Consensus 919 ~f~piv~e~c~n~~~~sd-p~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSD-PELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHhcCCCcCCC-HHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 467777788743 45 899999999999998866555443 3799999998 699999999999999998766
Q ss_pred chhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHh
Q 011328 148 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 227 (488)
Q Consensus 148 ~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l 227 (488)
|...+. ..+.+...| .+.++.+++.|+.+|++|..++ .+.+.|.++.+..++.+++..++.-|=.....+
T Consensus 993 pnlie~-----~T~~Ly~rL-~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 993 PNLIEP-----WTEHLYRRL-RDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred ccccch-----hhHHHHHHh-cCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 653332 345677788 8889999999999999998654 566789999999999999999998888788877
Q ss_pred ccCCchhHHHHHHhCCHHHHHHhcCCC
Q 011328 228 SDGTNDKIQAVIEAGVCPRLVELLRHP 254 (488)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~L~~lL~~~ 254 (488)
+.... . +. +++|-++..|.+.
T Consensus 1063 s~k~n-~---iy--nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1063 SSKGN-T---IY--NLLPDILSRLSNG 1083 (1251)
T ss_pred hhccc-c---hh--hhchHHHHhhccC
Confidence 76542 1 21 4566666666554
No 182
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.67 E-value=0.098 Score=49.60 Aligned_cols=174 Identities=11% Similarity=0.120 Sum_probs=112.2
Q ss_pred cHhHHHHHHHHHH-HhhcCCCCCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHH
Q 011328 172 KLSMLRNATWTLS-NFCRGKPQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 249 (488)
Q Consensus 172 ~~~v~~~a~~~L~-~l~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 249 (488)
..+-+..|+.-|. -++.+....+......++..+++.+.+ .+...+..|++.|..++.+.+.....-.+ -.+..+++
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Le 378 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLE 378 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHH
Confidence 3344555665444 444444455555667778888888887 68889999999999999887654332222 23445555
Q ss_pred hcCCCCcchHhHHHH-HHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcC
Q 011328 250 LLRHPSPSVLIPALR-TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAG 327 (488)
Q Consensus 250 lL~~~~~~v~~~a~~-~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~ 327 (488)
.-.+..+.+...|.. ++..++.+.+... +..+..++.+. +...-..++..+..+... +.+....++. .
T Consensus 379 aa~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~-d 448 (516)
T KOG2956|consen 379 AAKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLLP-D 448 (516)
T ss_pred HHhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhhh-h
Confidence 555555555554444 4545555555332 33455555555 555556666677777763 3444444443 5
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011328 328 IIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
+.|.+++...+.+..||+.|..+|..+..
T Consensus 449 iaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 449 IAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred hhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 99999999999999999999999998864
No 183
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.67 E-value=0.87 Score=47.67 Aligned_cols=210 Identities=14% Similarity=0.179 Sum_probs=125.9
Q ss_pred hCCCHHHHHHhhCC-----CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc---cccc----HhHHHHHHH
Q 011328 114 DHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAK----LSMLRNATW 181 (488)
Q Consensus 114 ~~g~i~~L~~~L~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~----~~v~~~a~~ 181 (488)
+.|++..++..+.+ ....+....+..|...+.- +.+|+.+.+.++++.|+..+. .... ..+.+..+.
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 56889999998876 3345666667777666655 567899999999999998884 2222 456666666
Q ss_pred HHHHhhcCCCCCCh--------h-----hhhchHHHHHHhhcc----CChhHHHHHHHHHHHhccCCchhHHHHHHhCCH
Q 011328 182 TLSNFCRGKPQPLF--------E-----QTRPALPALERLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVC 244 (488)
Q Consensus 182 ~L~~l~~~~~~~~~--------~-----~~~~~~~~l~~ll~~----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l 244 (488)
.+..+......... . ....-+..+++.+.+ .++.+....+++|-+++....+.++.+++. +
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F 271 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--F 271 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--H
Confidence 66555433211111 0 123345566666654 468999999999999999988887766642 2
Q ss_pred HHHHHh--cCCCCcchHhHHHHHHhHhhcCC------chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC
Q 011328 245 PRLVEL--LRHPSPSVLIPALRTVGNIVTGD------DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 316 (488)
Q Consensus 245 ~~L~~l--L~~~~~~v~~~a~~~L~~l~~~~------~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 316 (488)
...+++ ++.....--..-+.+++.++.+- ...+..+++.|++...++.|... .+.. ....
T Consensus 272 ~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~-----------~~~~ 339 (802)
T PF13764_consen 272 KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSL-----------KNTD 339 (802)
T ss_pred HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-Cccc-----------ccCC
Confidence 222221 11111111123355555555432 23456677888888888877655 3332 1112
Q ss_pred HHHHHHHHHcCChHHHHHHHhc
Q 011328 317 VNQIQAIIEAGIIGPLVNLLLN 338 (488)
Q Consensus 317 ~~~~~~l~~~~~l~~L~~ll~~ 338 (488)
.+.....+....+|..+++|..
T Consensus 340 s~eWk~~l~~psLp~iL~lL~G 361 (802)
T PF13764_consen 340 SPEWKEFLSRPSLPYILRLLRG 361 (802)
T ss_pred CHHHHHHhcCCcHHHHHHHHHH
Confidence 3445556666677777666653
No 184
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.66 E-value=0.38 Score=41.73 Aligned_cols=139 Identities=10% Similarity=0.134 Sum_probs=100.8
Q ss_pred HhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcc----cchhhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHH
Q 011328 259 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ----NYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLV 333 (488)
Q Consensus 259 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~----~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~ 333 (488)
.-.|+..+..+++ .++.+..+++..+--.+..+|.. ...+-+|..++++++.+.. ++.+.+..+...+++|..+
T Consensus 96 VcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 96 VCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred HHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 3456666666666 45566777787777777777743 3366789999999999998 5677888888999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHH---------CCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011328 334 NLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS---------QGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 334 ~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~---------~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~ 400 (488)
+.+..++..-|..|...+..+.... ....++++ .-+-+.+.++.+.+++.+..+++.+..++...
T Consensus 175 rime~GSelSKtvA~fIlqKIlldD--~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKILLDD--VGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhcc--ccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998654 22333222 11123344456677888888888887777543
No 185
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.51 E-value=0.14 Score=48.54 Aligned_cols=176 Identities=14% Similarity=0.176 Sum_probs=113.2
Q ss_pred CHHHHHHHHH-HHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHH
Q 011328 129 TDDVREQAVW-ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 207 (488)
Q Consensus 129 ~~~v~~~a~~-~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ 207 (488)
..+-+..|+. ...-++.++-...+... ..++..+++.|.++.+...+.-|+..|..++.+.+..-.....-++..+++
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le 378 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE 378 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH
Confidence 4455566665 44444555433322211 124567778886668889999999999999998866655555666667777
Q ss_pred hhccCChhHHHHHHHH-HHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCCh
Q 011328 208 LIHSNDDEVLTDACWA-LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQAL 286 (488)
Q Consensus 208 ll~~~~~~v~~~al~~-L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 286 (488)
.-.+.++++...|... +.-++...+... +..+..++...++.....++..+..++..-....-..+-..+.
T Consensus 379 aa~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~dia 450 (516)
T KOG2956|consen 379 AAKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIA 450 (516)
T ss_pred HHhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhh
Confidence 6666666665554444 444555554321 2333344444666667777778888776443322222334788
Q ss_pred HHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011328 287 PCLLDLLTQNYKKSIKKEACWTISNITA 314 (488)
Q Consensus 287 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 314 (488)
|.+++..++. +..||+.|+++|..+..
T Consensus 451 P~~iqay~S~-SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 451 PCVIQAYDST-SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred hHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence 9999999999 99999999999998865
No 186
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.49 E-value=0.23 Score=43.84 Aligned_cols=201 Identities=13% Similarity=0.054 Sum_probs=119.7
Q ss_pred CcchHhHHHHHHhHhhcCCchhhHHHh-hCCChHHHHHHhcccc--------hhhHH---HHHHHHHHHHhcCCHHHHHH
Q 011328 255 SPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQNY--------KKSIK---KEACWTISNITAGNVNQIQA 322 (488)
Q Consensus 255 ~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~lL~~~~--------~~~v~---~~a~~~L~nl~~~~~~~~~~ 322 (488)
+++.|+.|+.-|+.--...+...-.+. ..|.+..+++=+-+.+ ....- ..|+..+..++++ ++.+..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHHHH
Confidence 355677776666654443333333333 2344444433221110 11112 2333344445554 888889
Q ss_pred HHHcCChHHHHHHHhcC-----ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 011328 323 IIEAGIIGPLVNLLLNA-----EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 397 (488)
Q Consensus 323 l~~~~~l~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l 397 (488)
+++..+.-.|..+++.. -+.+|..++.+++.++...+++...++.+.+.++...+.++.+++-.+..|...+.++
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 99988877777777654 3568999999999999999999999999999999999999999888888899999999
Q ss_pred HHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCC
Q 011328 398 LKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEP 460 (488)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~ 460 (488)
+..+.-.....+. ...|.....-. -.-+..+...+++++-+...++..++.+..+-.++
T Consensus 167 L~dd~GL~yiC~t--~eRf~av~~vL--~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~a 225 (262)
T PF04078_consen 167 LLDDVGLNYICQT--AERFFAVAMVL--NKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREA 225 (262)
T ss_dssp HHSHHHHHHHTSS--HHHHHHHHHHH--HHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHH
T ss_pred HcchhHHHHHhcC--HHHHHHHHHHH--HHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHH
Confidence 8655433221111 11122211111 12234556778888887777777777665544333
No 187
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.93 Score=45.51 Aligned_cols=187 Identities=14% Similarity=0.095 Sum_probs=122.0
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcC-CCc----hhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch
Q 011328 75 VPRFIEFLSRDDFPQLQFEAAWALTNIAS-GTS----ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 149 (488)
Q Consensus 75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~-~~~----~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~ 149 (488)
=|.|.+-|+-.+ ..+|..|+..+.+.-- .+| +..+.+++.. ...+-.+|+++.+.+|..|...++.+...
T Consensus 176 ~p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQ-f~~l~~LL~d~~p~VRS~a~~gv~k~~s~--- 250 (1005)
T KOG1949|consen 176 KPILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQ-FEELYSLLEDPYPMVRSTAILGVCKITSK--- 250 (1005)
T ss_pred hHHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHHH---
Confidence 344556677788 7999999999998764 233 2344455433 67888899999999999998877776532
Q ss_pred hHHHHHh---cCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHH
Q 011328 150 CRDLVLS---NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSY 226 (488)
Q Consensus 150 ~~~~~~~---~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~ 226 (488)
+...+-. ...+..++.-+..++..+|+......|..+..++ ........++|.+-..+.+....|+..+...|..
T Consensus 251 fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ 328 (1005)
T KOG1949|consen 251 FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLK 328 (1005)
T ss_pred HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHHH
Confidence 1111111 1133444444555667788989999888888764 3334445677777788888899999999888887
Q ss_pred hccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011328 227 LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 271 (488)
Q Consensus 227 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 271 (488)
+-.... -.+.+-=-++.++..|..++..+.+..+..|.+.+.
T Consensus 329 ik~vra---~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~l 370 (1005)
T KOG1949|consen 329 IKAVRA---AKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFL 370 (1005)
T ss_pred HHhhhh---hhhhccccHHHHHHHHhccccHHHHHHHHHHHHhhc
Confidence 643321 223322334556666766666666666666655543
No 188
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.48 E-value=0.0068 Score=46.44 Aligned_cols=73 Identities=21% Similarity=0.246 Sum_probs=61.0
Q ss_pred CChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011328 284 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 284 ~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
.++..|+++|..+.++.+..-||.-|+.++...|..+..+-+.|+-..+++++.++|++||.+|+.|+..+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4678899999655588888899999999999767777777788999999999999999999999999988764
No 189
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.45 E-value=0.14 Score=51.11 Aligned_cols=256 Identities=13% Similarity=0.154 Sum_probs=164.2
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 011328 36 VAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRVVID 114 (488)
Q Consensus 36 ~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 114 (488)
++.+.-.+.+.+..=..-|.+.+.. ....++...+++.|+..+.-++ ..++. ..+..++.... ..+ .+
T Consensus 260 Leel~lks~~eK~~Ff~~L~~~l~~----~pe~i~~~kvlp~Ll~~~~~g~a~~~~l-tpl~k~~k~ld-~~e-----yq 328 (690)
T KOG1243|consen 260 LEELRLKSVEEKQKFFSGLIDRLDN----FPEEIIASKVLPILLAALEFGDAASDFL-TPLFKLGKDLD-EEE-----YQ 328 (690)
T ss_pred HHhcccCcHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHhhccccchhhh-hHHHHhhhhcc-ccc-----cc
Confidence 3444445555555444455443322 2344555667777777666544 12222 22222333332 222 56
Q ss_pred CCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCC
Q 011328 115 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 194 (488)
Q Consensus 115 ~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 194 (488)
.+++|.|+++++..+..+|-..+.-+-.+... ..+.+++..+++.+...+ .++++.+++..+.++..++..-...
T Consensus 329 ~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~~~- 403 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLSKR- 403 (690)
T ss_pred cchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhchh-
Confidence 67899999999999999998877666666544 344566777888888888 8899999999999998887643111
Q ss_pred hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCc
Q 011328 195 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 274 (488)
Q Consensus 195 ~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 274 (488)
......+..+.++-.+.+..++....-|++.++...... ..+.-....+...++++-..-|..+...++......+
T Consensus 404 -~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~---~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~ 479 (690)
T KOG1243|consen 404 -NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS---VRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFD 479 (690)
T ss_pred -hhcHHHHHHHHhhCccccCcccccceeeecccccccchh---hhccccchhhhhhhcCCCCCchhhhhHHHhhcccccc
Confidence 233455556665555667888998888888887664322 1222233445556777777888888888876655433
Q ss_pred hhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC
Q 011328 275 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 315 (488)
Q Consensus 275 ~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 315 (488)
. .-+...+++.+..+..++ +..+|..|..++..+-..
T Consensus 480 ~---~~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~fl~k 516 (690)
T KOG1243|consen 480 Q---SEVANKILPSLVPLTVDP-EKTVRDTAEKAIRQFLEK 516 (690)
T ss_pred h---hhhhhhccccccccccCc-ccchhhHHHHHHHHHHhh
Confidence 2 223457888888888888 888998888888766543
No 190
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.37 E-value=1.2 Score=44.19 Aligned_cols=254 Identities=13% Similarity=0.074 Sum_probs=138.9
Q ss_pred CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHH
Q 011328 42 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF 121 (488)
Q Consensus 42 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 121 (488)
...+.|..+...|..++.... .... .... .+.+.+..+..++.-..-+.+|..++.+..+. ...+.++.+.|
T Consensus 41 ~p~e~R~~~~~ll~~~i~~~~-~~~~-~~R~----~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L 112 (464)
T PF11864_consen 41 QPSEARRAALELLIACIKRQD-SSSG-LMRA----EFFRDISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFL 112 (464)
T ss_pred CCHHHHHHHHHHHHHHHHccc-cccH-HHHH----HHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHH
Confidence 346788899999998887652 2111 1121 22233333322333334455666666644333 23567788888
Q ss_pred HHhhCCC---------------------------CHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHh
Q 011328 122 VRLLSSP---------------------------TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLS 174 (488)
Q Consensus 122 ~~~L~~~---------------------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~ 174 (488)
...+..- +.......+..+.++...+...-+.-.-.+.+..++.+..+.+++.
T Consensus 113 ~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~ 192 (464)
T PF11864_consen 113 LSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSED 192 (464)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHH
Confidence 8777421 1222334455555655444322111111234555666654555555
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-
Q 011328 175 MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH- 253 (488)
Q Consensus 175 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~- 253 (488)
....++..+-.+.... .........++..|...... .+....+..++.|++...... ..+..|..+|.+
T Consensus 193 di~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~--~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~ 262 (464)
T PF11864_consen 193 DIEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNS--VSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSP 262 (464)
T ss_pred HHHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhcc--cccchhHHHHHHHHHcCccHH-------HHHHHHHHHHccc
Confidence 5566666666665543 12222334444444444322 266677788888888654322 345667777732
Q ss_pred -----CCcchHhHHHHHHhHhhcCCchhhHHHhh-C--CChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011328 254 -----PSPSVLIPALRTVGNIVTGDDMQTQCIIN-H--QALPCLLDLLTQNYKKSIKKEACWTISNITA 314 (488)
Q Consensus 254 -----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~--~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 314 (488)
.+..+.+-|+..+..+..+..+....-+. . -+++.+...++.. +..+-.+.+..+.++..
T Consensus 263 ~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 263 DPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLLD 330 (464)
T ss_pred CccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHHh
Confidence 23455667888888887765332222221 1 2678888888877 67777777777777763
No 191
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.34 E-value=0.025 Score=46.72 Aligned_cols=147 Identities=18% Similarity=0.142 Sum_probs=96.6
Q ss_pred ChHHHHHHhcc-cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHH
Q 011328 285 ALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 363 (488)
Q Consensus 285 ~~~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 363 (488)
-++.++..|.. +..+++|..+.-++..+... ..... ...+-+.+-..+..++.+-...+..++..+.... ++..
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~---~~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~-~dv~ 78 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLLDA---AREEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGP-PDVG 78 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTT-HHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHHHH---hHHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCC-HHHH
Confidence 34555665554 43778999999999988522 12222 2223334444555555667778899999887654 5555
Q ss_pred HHH-HHCCChHHHHhhcC--CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhh-cCCCHH
Q 011328 364 KFL-VSQGCIKPLCDLLN--CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTE 439 (488)
Q Consensus 364 ~~l-~~~~~i~~L~~ll~--~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~-~~~~~~ 439 (488)
..+ ...|.++.+..+.. .++..+...++++|..-+.... ++.+....+++.|.++. +++++.
T Consensus 79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~--------------~r~~I~~~~~~~L~~~~~~~~~~~ 144 (157)
T PF11701_consen 79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKS--------------CRTFISKNYVSWLKELYKNSKDDS 144 (157)
T ss_dssp HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHH--------------HHHCCHHHCHHHHHHHTTTCC-HH
T ss_pred HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHH--------------HHHHHHHHHHHHHHHHHccccchH
Confidence 554 56788999999988 7788888888888875554433 44444566789999998 566666
Q ss_pred -HHHHHHHHHHH
Q 011328 440 -IYEKAVKILET 450 (488)
Q Consensus 440 -v~~~a~~~l~~ 450 (488)
++-+|.-.|.+
T Consensus 145 ~ir~~A~v~L~K 156 (157)
T PF11701_consen 145 EIRVLAAVGLCK 156 (157)
T ss_dssp -CHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 78888877765
No 192
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.31 E-value=0.33 Score=48.60 Aligned_cols=193 Identities=12% Similarity=0.140 Sum_probs=137.3
Q ss_pred hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh
Q 011328 197 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 276 (488)
Q Consensus 197 ~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 276 (488)
....++|.++++++..|..+|...+.-+-.....-. +.+++..+++.+...+.+.++.+|+..+.++..++..-...
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt---~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLT---KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcC---HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 567899999999999999999988888777765543 44777789999999999999999999999999888643222
Q ss_pred hHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011328 277 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN-VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 355 (488)
Q Consensus 277 ~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~ 355 (488)
.+....+..+-+.-.+. +..+|....-+++.++... +..++ .-....+.+.+.++-..-|..+.+++....
T Consensus 404 ---~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~~~~R~----~vL~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 404 ---NLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLAASVRK----RVLASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred ---hhcHHHHHHHHhhCccc-cCcccccceeeecccccccchhhhc----cccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 23334444444444433 7788888888888887642 22222 223445555667776677888888877765
Q ss_pred cCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 011328 356 SGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAE 404 (488)
Q Consensus 356 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~ 404 (488)
..-+... +...+++.+.-+.-+++..++..+..++.......++.
T Consensus 476 ~~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~ 520 (690)
T KOG1243|consen 476 EYFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV 520 (690)
T ss_pred cccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence 4332211 23357888888888888899999999988887766554
No 193
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=96.31 E-value=0.33 Score=46.27 Aligned_cols=275 Identities=19% Similarity=0.178 Sum_probs=140.5
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHH-HHHHhhhhCCCchhHH
Q 011328 75 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQA-VWALGNVAGDSPKCRD 152 (488)
Q Consensus 75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~-~~~~v~~~a-~~~L~~l~~~~~~~~~ 152 (488)
+..++.-+.+.....+|..++--|+.-+. +++.+..+..+|....+++.+.. ++..+...+ +.++.-++.+.. ...
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence 55666667755547889999888888888 89999999999999999999955 333244444 344444444443 233
Q ss_pred HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc---------cCChhHHHHHHHH
Q 011328 153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---------SNDDEVLTDACWA 223 (488)
Q Consensus 153 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~---------~~~~~v~~~al~~ 223 (488)
.+........+++++.-.....+..... .. ....-.......+..+.+.+. .....-+..++.+
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~-~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~ 173 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SS-RKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA 173 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchh------hh-hhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence 3334444555566663000000000000 00 000000000111111112210 1112223334444
Q ss_pred HHHhc--------------cCCchhHHHHHHhCCHHHHHHhcC----CC-------Cc-----chHhHHHHHHhHhhcCC
Q 011328 224 LSYLS--------------DGTNDKIQAVIEAGVCPRLVELLR----HP-------SP-----SVLIPALRTVGNIVTGD 273 (488)
Q Consensus 224 L~~l~--------------~~~~~~~~~~~~~~~l~~L~~lL~----~~-------~~-----~v~~~a~~~L~~l~~~~ 273 (488)
+-.++ ...+...+.+.+.|+++.+++.+. .. .+ .....++++|-+.+..+
T Consensus 174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 44332 111222344556677888888874 11 11 23455788888888766
Q ss_pred chhhHHHhhC--CChHHHHH-Hhccc--chhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh------c----
Q 011328 274 DMQTQCIINH--QALPCLLD-LLTQN--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL------N---- 338 (488)
Q Consensus 274 ~~~~~~~~~~--~~~~~L~~-lL~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~------~---- 338 (488)
......+... +.+..+.. .+... ....+...+++.+.|++.++++....+...++...+..+.. .
T Consensus 254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~ 333 (361)
T PF07814_consen 254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNY 333 (361)
T ss_pred ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccc
Confidence 6555444422 23333332 22222 03344567888999999888777666665433322211111 1
Q ss_pred ----CChhHHHHHHHHHHHhccCC
Q 011328 339 ----AEFEIKKEAAWAISNATSGG 358 (488)
Q Consensus 339 ----~~~~v~~~a~~aL~~l~~~~ 358 (488)
...+...-++.+|.|++...
T Consensus 334 ~~~~~~~D~~IL~Lg~LINL~E~s 357 (361)
T PF07814_consen 334 VPEESSFDILILALGLLINLVEHS 357 (361)
T ss_pred ccccccchHHHHHHHhHHHheeeC
Confidence 12355666777777777654
No 194
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.21 E-value=0.044 Score=45.26 Aligned_cols=145 Identities=16% Similarity=0.171 Sum_probs=100.7
Q ss_pred HHHHHHhcC--CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHH
Q 011328 244 CPRLVELLR--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ 321 (488)
Q Consensus 244 l~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 321 (488)
++.++..+. ...+++|..+.-++..+.. ..+.-....+-+.+...+... +.+-...++.++..+-...++...
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~----~~~~~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLLD----AAREEFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHH
Confidence 344555544 3567899999988888842 222222333445566666666 666788889999999888788777
Q ss_pred HHH-HcCChHHHHHHHh--cCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC-CCHH-HHHHHHHHHHH
Q 011328 322 AII-EAGIIGPLVNLLL--NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPR-IVTVCLEGLEN 396 (488)
Q Consensus 322 ~l~-~~~~l~~L~~ll~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~-v~~~al~~L~~ 396 (488)
.++ ..|+++.+..+.. .++..++..++.+|..-+.. +..+..+.+.+++.|.++++. ++.. ++..|+-+|.+
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d---~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID---KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS---HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 766 5788999999999 67888889999998887653 344455556899999999964 4455 67777766653
No 195
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=96.21 E-value=0.76 Score=41.53 Aligned_cols=202 Identities=11% Similarity=0.126 Sum_probs=137.9
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchh----HHHHH-HhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCC
Q 011328 199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK----IQAVI-EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD 273 (488)
Q Consensus 199 ~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~----~~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 273 (488)
.+.++.++..+...+-+.+..++.+..++....-+. .+.+. ..+++..|+..-.. .+++...+-..+....+ .
T Consensus 78 ~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEcir-h 155 (342)
T KOG1566|consen 78 ADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRECIR-H 155 (342)
T ss_pred CCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHHHh-h
Confidence 577888888888888888888888888877433221 11111 12444455444211 24444444444444444 3
Q ss_pred chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCC---hHH-HHHHHhcCChhHHHHHHH
Q 011328 274 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI---IGP-LVNLLLNAEFEIKKEAAW 349 (488)
Q Consensus 274 ~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~---l~~-L~~ll~~~~~~v~~~a~~ 349 (488)
+...+.+....-+......++.+ ..++...|..+...+.......+..++..+. ++. --.++.+++.-.+..+..
T Consensus 156 e~LakiiL~s~~~~~FF~~vq~p-~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~k 234 (342)
T KOG1566|consen 156 EFLAKIILESTNFEKFFLYVQLP-NFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLK 234 (342)
T ss_pred HHHHHHHHcchhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHH
Confidence 45566677888888899999888 8889999999988887754555555554332 343 455777889999999999
Q ss_pred HHHHhccCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 011328 350 AISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA 403 (488)
Q Consensus 350 aL~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~ 403 (488)
+|+.+.... .....+++.+...+..++.+|.++...++-.|......+.....+
T Consensus 235 llg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK 290 (342)
T KOG1566|consen 235 LLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNK 290 (342)
T ss_pred hHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCC
Confidence 999997644 334566666667899999999999999998888877766655443
No 196
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=96.09 E-value=0.15 Score=53.19 Aligned_cols=196 Identities=13% Similarity=0.100 Sum_probs=136.9
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhh
Q 011328 119 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 198 (488)
Q Consensus 119 ~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 198 (488)
+.+..-+.+.+..-|..++..+........ ........+.+..++.....+.+..+...++.+|..++..-.....-..
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 334444455778888888888888776544 1111112234556666666778888999999999999887655555666
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCc-hhh
Q 011328 199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQT 277 (488)
Q Consensus 199 ~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~ 277 (488)
..++|.++.-+......++..+..++-.++....- ....+.+...+.+.++.++..+...+.......+ ...
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 78889999999888888888888888776653321 1456788889999999999998777777666444 211
Q ss_pred HHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHH
Q 011328 278 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAI 323 (488)
Q Consensus 278 ~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l 323 (488)
..-.-.+.++.++....+. +.+||..|..+++.+.. ...+....+
T Consensus 408 ~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k~~Ge~~~~k~ 453 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMKVHGEEVFKKL 453 (815)
T ss_pred chhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 1112235778888888888 89999999999988876 334444433
No 197
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.09 E-value=0.29 Score=48.88 Aligned_cols=144 Identities=18% Similarity=0.173 Sum_probs=106.5
Q ss_pred CCHHHHHHhhcC----CCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHhhhhCCC
Q 011328 73 GVVPRFIEFLSR----DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDS 147 (488)
Q Consensus 73 ~~i~~L~~lL~~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~-~~~~~v~~~a~~~L~~l~~~~ 147 (488)
++-|...+...+ ++ +.++..|..+|..+..-+.+.... -+|.|+..++ +++|.+|.+|.-.++.+.-.-
T Consensus 892 ~F~pvVeE~csn~~~~sd-~~lq~aA~l~L~klMClS~~fc~e-----hlpllIt~mek~p~P~IR~NaVvglgD~~vcf 965 (1128)
T COG5098 892 NFKPVVEEGCSNSSRFSD-EELQVAAYLSLYKLMCLSFEFCSE-----HLPLLITSMEKHPIPRIRANAVVGLGDFLVCF 965 (1128)
T ss_pred hhhHHHHHHhccccccCC-HHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhCCCcceeccceeeccccceeh
Confidence 344455555544 45 899999999998887644444332 3799999988 699999999999999886432
Q ss_pred chhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHh
Q 011328 148 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 227 (488)
Q Consensus 148 ~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l 227 (488)
....+ ..-..|.+.| .+.+..|++.++.++..+.... ...+.|-++.+..+|.++|..+...|-..+..+
T Consensus 966 N~~~d-----e~t~yLyrrL-~De~~~V~rtclmti~fLilag----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~ 1035 (1128)
T COG5098 966 NTTAD-----EHTHYLYRRL-GDEDADVRRTCLMTIHFLILAG----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQI 1035 (1128)
T ss_pred hhhhH-----HHHHHHHHHh-cchhhHHHHHHHHHHHHHHHcc----ceeeccchhhhHhhccCCcchHHHHHHHHHHHH
Confidence 22211 1345677777 7788899999999999987543 244578889999999999999998888888888
Q ss_pred ccCCc
Q 011328 228 SDGTN 232 (488)
Q Consensus 228 ~~~~~ 232 (488)
+..+.
T Consensus 1036 a~KdN 1040 (1128)
T COG5098 1036 AKKDN 1040 (1128)
T ss_pred Hhccc
Confidence 76543
No 198
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.05 E-value=0.12 Score=45.92 Aligned_cols=102 Identities=12% Similarity=0.063 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHh
Q 011328 89 QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF 167 (488)
Q Consensus 89 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll 167 (488)
.....|+++|.-++--.|..+..+.....++.++.+|+. ..+.++..++.+|..+..+++.....+.+.+++..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 345668889988888889999999999999999999954 6799999999999999999998889999999999999999
Q ss_pred cc-cccHhHHHHHHHHHHHhhcCC
Q 011328 168 NE-HAKLSMLRNATWTLSNFCRGK 190 (488)
Q Consensus 168 ~~-~~~~~v~~~a~~~L~~l~~~~ 190 (488)
+. +.+.+++-.++..|.-.....
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHccc
Confidence 63 347778888888877665443
No 199
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.00 E-value=1.9 Score=42.88 Aligned_cols=287 Identities=13% Similarity=0.084 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHH
Q 011328 44 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR 123 (488)
Q Consensus 44 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 123 (488)
-..|..|+..+...+..-+-..+. .+....-.++..+...+.|..++..+..+...... +..... ..+.+
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i~-----~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~-~~~~~R----~~fF~ 73 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSIE-----EIWYAAKDLIDPNQPSEARRAALELLIACIKRQDS-SSGLMR----AEFFR 73 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHH-----HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcccc-ccHHHH----HHHHH
Confidence 356777888888876654322222 13444456777666578999999999998874332 111111 11112
Q ss_pred h-hCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc--------------------------cHhHH
Q 011328 124 L-LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--------------------------KLSML 176 (488)
Q Consensus 124 ~-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~--------------------------~~~v~ 176 (488)
. -....++--..-+.+|..|+.+..+. ...+.+..+.+...+...- +....
T Consensus 74 ~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l 151 (464)
T PF11864_consen 74 DISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNL 151 (464)
T ss_pred HHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhH
Confidence 2 22234444445566777777665544 2234556666665552111 22333
Q ss_pred HHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCC---chhHHHHHHhCCHHHHHHhc
Q 011328 177 RNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGT---NDKIQAVIEAGVCPRLVELL 251 (488)
Q Consensus 177 ~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~-~~~~v~~~al~~L~~l~~~~---~~~~~~~~~~~~l~~L~~lL 251 (488)
...+..+.++.+.+ .........+.+..++.+... .+......++..+..+.... ++... .++..|....
T Consensus 152 ~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~ 226 (464)
T PF11864_consen 152 SDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIV 226 (464)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHh
Confidence 44555555555554 333334455566666655433 33444455555555544322 11111 2233333332
Q ss_pred CCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhc--cc---chhhHHHHHHHHHHHHhcCCHHHHHHHHH-
Q 011328 252 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT--QN---YKKSIKKEACWTISNITAGNVNQIQAIIE- 325 (488)
Q Consensus 252 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~--~~---~~~~v~~~a~~~L~nl~~~~~~~~~~l~~- 325 (488)
...+....+-.++.||+...-.. ..+..|..+|. ++ .+..+.+.|+..+..+..+..+....-+.
T Consensus 227 --~~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~ 297 (464)
T PF11864_consen 227 --NSVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPF 297 (464)
T ss_pred --cccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecc
Confidence 22367777888888888633221 24566778882 21 14556678888888887754222211111
Q ss_pred c--CChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011328 326 A--GIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 326 ~--~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
. -+++.+...++.++..+-.+.+..+.++..
T Consensus 298 ~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 298 SPSSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred cHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 1 278888888888877777777777777763
No 200
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.97 E-value=0.11 Score=50.30 Aligned_cols=251 Identities=12% Similarity=0.063 Sum_probs=132.4
Q ss_pred HHHHHHHhcCCCch-hhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccccc
Q 011328 94 AAWALTNIASGTSE-NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAK 172 (488)
Q Consensus 94 a~~~L~~l~~~~~~-~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 172 (488)
+-..|..+....+. .....+....+..|+.+++++++.-|+....+|.++-..-...|..+.. .....+.+.+.....
T Consensus 110 vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~ 188 (409)
T PF01603_consen 110 VYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETER 188 (409)
T ss_dssp HHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCccc
Confidence 34445555442211 1333445567889999999999999999999998886544444444432 344455666644445
Q ss_pred HhHHHHHHHHHHHhhcCCC-CCChhhhhchHHHHHHhhccCC-hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHh
Q 011328 173 LSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 250 (488)
Q Consensus 173 ~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~l~~ll~~~~-~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 250 (488)
..-...++..++.+..+-. ........-....++.+.+.+. .........++......++.....++ ..+++.
T Consensus 189 ~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i-----~~llk~ 263 (409)
T PF01603_consen 189 HNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVI-----KGLLKH 263 (409)
T ss_dssp -STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHH-----HHHHHH
T ss_pred ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHH-----HHHHHh
Confidence 5556677888888877653 2223333344455556655543 22344555555555554444433222 223332
Q ss_pred cCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH---cC
Q 011328 251 LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AG 327 (488)
Q Consensus 251 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~ 327 (488)
=-..++.=...-+.-+..+....+...-.-+...+...+...++++ +..|-+.|+....|= . ...++. ..
T Consensus 264 WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~-----~-~~~li~~~~~~ 336 (409)
T PF01603_consen 264 WPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNE-----Y-FLSLISQNSRV 336 (409)
T ss_dssp S-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSH-----H-HHHHHHCTHHH
T ss_pred CCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCH-----H-HHHHHHhChHH
Confidence 2223333333344445555543322111112224566777778888 888888877554321 1 111221 12
Q ss_pred ChHHHHHHHhc----C-ChhHHHHHHHHHHHhccC
Q 011328 328 IIGPLVNLLLN----A-EFEIKKEAAWAISNATSG 357 (488)
Q Consensus 328 ~l~~L~~ll~~----~-~~~v~~~a~~aL~~l~~~ 357 (488)
++|.+..-+.. . +..|+..|..++.-+...
T Consensus 337 i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 337 ILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEM 371 (409)
T ss_dssp HHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 56666665543 2 678999999998888764
No 201
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.90 E-value=0.011 Score=33.48 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=26.0
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccC
Q 011328 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSG 357 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 357 (488)
++|.+++++++++++||..|+.+|+.++..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 378899999999999999999999999753
No 202
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.85 E-value=3.8 Score=45.20 Aligned_cols=143 Identities=12% Similarity=0.095 Sum_probs=99.1
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011328 73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 152 (488)
Q Consensus 73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (488)
+.+..++..+..+. ..+|..|++||..+...+|.... ...+-..+-.-+.+....||+.|+..++......++...
T Consensus 816 ~yLk~Il~~l~e~~-ialRtkAlKclS~ive~Dp~vL~---~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 816 PYLKLILSVLGENA-IALRTKALKCLSMIVEADPSVLS---RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHHhcCch-HHHHHHHHHHHHHHHhcChHhhc---CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHH
Confidence 56777778888777 89999999999999986654322 112223333445567889999999999988766554322
Q ss_pred HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc---cCChhHHHHHHHHHHHhcc
Q 011328 153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---SNDDEVLTDACWALSYLSD 229 (488)
Q Consensus 153 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~---~~~~~v~~~al~~L~~l~~ 229 (488)
. ....+.+.+ .++...||..++..+..+|...|.-. .....+.++++ ++...++.-+..++..+.-
T Consensus 892 q-----yY~~i~erI-lDtgvsVRKRvIKIlrdic~e~pdf~-----~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 892 Q-----YYDQIIERI-LDTGVSVRKRVIKILRDICEETPDFS-----KIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred H-----HHHHHHhhc-CCCchhHHHHHHHHHHHHHHhCCChh-----hHHHHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence 2 234555555 66788999999999999998754322 23344455554 4455689999999988874
Q ss_pred C
Q 011328 230 G 230 (488)
Q Consensus 230 ~ 230 (488)
.
T Consensus 961 ~ 961 (1692)
T KOG1020|consen 961 T 961 (1692)
T ss_pred c
Confidence 4
No 203
>PRK14707 hypothetical protein; Provisional
Probab=95.77 E-value=5 Score=45.96 Aligned_cols=402 Identities=11% Similarity=0.055 Sum_probs=201.8
Q ss_pred ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328 30 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 30 ~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
.++...++.|.. ++...-..++..|..-+..+ .+....+-..|+-..|-.+-+=++ ..+-..++..|..-...+.+.
T Consensus 373 q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d-~~l~~~~~~Q~van~lnalsKWPd-~~~C~~aa~~lA~~la~d~~l 450 (2710)
T PRK14707 373 QGVSSVLNALSKWPDTPVCAAAASALAEHVVDD-LELRKGLDPQGVSNALNALAKWPD-LPICGQAVSALAGRLAHDTEL 450 (2710)
T ss_pred hHHHHHHhhhhcCCCchHHHHHHHHHHHHhccC-hhhhhhcchhhHHHHHHHhhcCCc-chhHHHHHHHHHHHHhccHHH
Confidence 456677777775 56566666667776656544 444554444554444444444456 556666666666655557787
Q ss_pred hHHHHhCCCHHHHHHhhCC-CC-HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHh-HHHHHHHHHHH
Q 011328 109 TRVVIDHGAVPIFVRLLSS-PT-DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLS-MLRNATWTLSN 185 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~~L~~-~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~-v~~~a~~~L~~ 185 (488)
++.+--.+ +...+..++. ++ +..++.+-.....|+.+ +..++.+--.++.. -++-|.+.++.. ....+.|.-..
T Consensus 451 ~~~~~p~~-va~~LnalSKWPd~p~c~~aa~~La~~l~~~-~~l~~a~~~q~~~~-~L~aLSK~Pd~~~c~~A~~~lA~r 527 (2710)
T PRK14707 451 CKALDPIN-VTQALDALSKWPDTPICGQTASALAARLAHE-RRLRKALKPQEVVI-ALHSLSKWPDTPICAEAASALAER 527 (2710)
T ss_pred HhhcChHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhccc-HHHHhhcCHHHHHH-HHHHhhcCCCcHHHHHHHHHHHHH
Confidence 77765555 4444445554 44 44444444444555543 33444443333332 333333545433 34445555555
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CC-cchHhHHH
Q 011328 186 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PS-PSVLIPAL 263 (488)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~-~~v~~~a~ 263 (488)
+.........+...++...+-.+-+.++......+...|.......+.. ..-++..-+..+++.|+. ++ +..+..+.
T Consensus 528 l~~~~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~-~~~L~aq~Vs~llNaLSKWP~~~aC~~Aa~ 606 (2710)
T PRK14707 528 VVDELQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQL-PKDLHRQGVVIVLNALSKWPDTAVCAEAVN 606 (2710)
T ss_pred hccchhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhh-HHhhhhhHHHHHHHhhccCCCcHHHHHHHH
Confidence 5544322222222333333334444555555555555665554433322 223444556667777755 44 34444444
Q ss_pred HHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCChh
Q 011328 264 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-NAEFE 342 (488)
Q Consensus 264 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~ 342 (488)
++-+.+.. .+..... ++..-+..++.-|+.-.+......+...|..-..........+-. .-+..+++-|+ -++.+
T Consensus 607 ~LA~~l~~-~~~lr~~-l~~q~lan~lNALSKWP~s~~C~~Aa~rLA~rl~~~~~l~~~fna-Q~vAn~LNALSKWPe~e 683 (2710)
T PRK14707 607 ALAERLVD-EPDLRKE-LDPVDVTNVLNALSKWPGTEVCAEVARLLAGRLVGDRLLRKTFNS-LDVANALNALSKWPDTP 683 (2710)
T ss_pred HHHHHhcc-Chhhhhh-ccHHHHHHHHhhhhcCCCchHHHHHHHHHHHHhhhchhhHhhcch-HHHHHHHHhhhcCCCch
Confidence 44444443 3332222 333344455555543324455555555554333222333322322 23444444444 45777
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHh
Q 011328 343 IKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDD 422 (488)
Q Consensus 343 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 422 (488)
....|+..|..-... ++.....+-..++-..|-.+-+.++......+...|..-+...+. ....|..
T Consensus 684 ~Cr~Aa~~LA~rLa~-~~~Lr~al~pQ~vAN~LNALSKWP~~~~Cr~AA~~LA~rL~~~p~------------l~~a~~a 750 (2710)
T PRK14707 684 VCAAAAGGMAERLAA-DPGLRKELNPVDVANALNALSKWPRTPVCAAVASALAARVVAEPR------------LRKAFDA 750 (2710)
T ss_pred HHHHHHHHHHHHHhc-ChhhHhhcCHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHhcChh------------hhhhcCH
Confidence 778888887655443 345555544444444444455567766655555555444322221 2344555
Q ss_pred hccHHHHHHhhcCCCHH-HHHHHHHHHHHhcC
Q 011328 423 AEGLEKIENLQSHDNTE-IYEKAVKILETYWV 453 (488)
Q Consensus 423 ~g~~~~L~~l~~~~~~~-v~~~a~~~l~~~~~ 453 (488)
.+.-..|..|..=+..+ =+..+..+.+++..
T Consensus 751 QevANaLNALSKWPd~~~C~~AA~aLA~rLa~ 782 (2710)
T PRK14707 751 QQVATALNALSKWPDNQACAAAANTLAERQLR 782 (2710)
T ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHHHHhh
Confidence 55556666666555444 44455555555543
No 204
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.77 E-value=0.066 Score=45.88 Aligned_cols=112 Identities=17% Similarity=0.193 Sum_probs=79.2
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcC--------CCChhHHHHHHHHHHHh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR--------DDFPQLQFEAAWALTNI 101 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~--------~~~~~v~~~a~~~L~~l 101 (488)
.....+++.+.+..... ..+..|...+...+....+.+++.|++..|+++|.. .........+++|+..+
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 34555778887655432 444455554554434557888899999999998752 12257889999999999
Q ss_pred cCCCchhhHHHH-hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhh
Q 011328 102 ASGTSENTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144 (488)
Q Consensus 102 ~~~~~~~~~~~~-~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~ 144 (488)
.. +...+..++ ..+.+..+...|.+++..++..++.+|..+|
T Consensus 144 ~n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MN-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TS-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred Hc-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 98 556566665 5689999999999999999999999999886
No 205
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.72 E-value=2.1 Score=47.14 Aligned_cols=147 Identities=12% Similarity=0.092 Sum_probs=86.6
Q ss_pred CChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHH
Q 011328 284 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 363 (488)
Q Consensus 284 ~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 363 (488)
+++|.|-.-|.+. +..+|..|...++.+......... =-...++...+.-+.+.+.+||.++.....++..+. +...
T Consensus 259 ~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~-~~~~ 335 (1266)
T KOG1525|consen 259 AVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNN-PSIA 335 (1266)
T ss_pred HHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcC-chhh
Confidence 6889999999888 899999999999999875332221 001234566666777788999999999998887653 3322
Q ss_pred HHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHH
Q 011328 364 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK 443 (488)
Q Consensus 364 ~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~ 443 (488)
... +....+.....+.+..++..++-....... +.-.+... .+..+.+.+.+...+||..
T Consensus 336 ~~~---~~~~~l~~~~~D~~~rir~~v~i~~~~v~~----------------~~l~~~~~-ll~~~~eR~rDKk~~VR~~ 395 (1266)
T KOG1525|consen 336 KAS---TILLALRERDLDEDVRVRTQVVIVACDVMK----------------FKLVYIPL-LLKLVAERLRDKKIKVRKQ 395 (1266)
T ss_pred hHH---HHHHHHHhhcCChhhhheeeEEEEEeehhH----------------hhhhhhHH-HHHHHHHHHhhhhHHHHHH
Confidence 221 223333333333333332222111111111 11112222 4555566666777888888
Q ss_pred HHHHHHHhcC
Q 011328 444 AVKILETYWV 453 (488)
Q Consensus 444 a~~~l~~~~~ 453 (488)
|..-+..+|.
T Consensus 396 Am~~LaqlYk 405 (1266)
T KOG1525|consen 396 AMNGLAQLYK 405 (1266)
T ss_pred HHHHHHHHHH
Confidence 8887777776
No 206
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=2.8 Score=42.64 Aligned_cols=281 Identities=14% Similarity=0.063 Sum_probs=159.7
Q ss_pred CCCHHHHHHhhCC--------CCHHHHHHHHHHHhhhhC--CCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHH
Q 011328 115 HGAVPIFVRLLSS--------PTDDVREQAVWALGNVAG--DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS 184 (488)
Q Consensus 115 ~g~i~~L~~~L~~--------~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 184 (488)
.|+++.+...|.. +++.-.+.|++.++++.. ..+.....+++.-++..++..+ ++..--++..+|..++
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f-~s~ygfL~Srace~is 485 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAF-RSNYGFLKSRACEFIS 485 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhh-cCcccchHHHHHHHHH
Confidence 3788988888832 345667888888888864 2222223344433444455455 5566668889999999
Q ss_pred HhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHh---CCHHHHHHhcCCCCcchHhH
Q 011328 185 NFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLRHPSPSVLIP 261 (488)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~v~~~ 261 (488)
.+..+ -+.......+.......+++++-.|+..|+.++..+..+.. ....+.. +.++.|+.+-+.-+-++...
T Consensus 486 ~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q--~h~k~sahVp~tmekLLsLSn~feiD~LS~ 561 (970)
T COG5656 486 TIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ--SHEKFSAHVPETMEKLLSLSNTFEIDPLSM 561 (970)
T ss_pred HHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh--hhHHHHhhhhHHHHHHHHhcccccchHHHH
Confidence 98544 33334455677778888888888999999989888776542 2323333 33444444444433344444
Q ss_pred HHHHH-hHhhcCCchhhHHHh---hCCChHHHHHHhcccc-----hhhHHHHHHHHHHHHhc------CCHHHHHHHHHc
Q 011328 262 ALRTV-GNIVTGDDMQTQCII---NHQALPCLLDLLTQNY-----KKSIKKEACWTISNITA------GNVNQIQAIIEA 326 (488)
Q Consensus 262 a~~~L-~~l~~~~~~~~~~~~---~~~~~~~L~~lL~~~~-----~~~v~~~a~~~L~nl~~------~~~~~~~~l~~~ 326 (488)
++..+ ...+..-......+. ...++.....++.++. ..+-+..|.+.|..+.. ..+...+.+..
T Consensus 562 vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~- 640 (970)
T COG5656 562 VMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEV- 640 (970)
T ss_pred HHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH-
Confidence 33332 222221111111111 1123333444443331 11233455555554432 23444444433
Q ss_pred CChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCH-HHHHHHHHHHHHHHHhhhhh
Q 011328 327 GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP-RIVTVCLEGLENILKAGEAE 404 (488)
Q Consensus 327 ~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~-~v~~~al~~L~~l~~~~~~~ 404 (488)
...|.+-=.+.+.-.++-.+|+..+-+.+... .+..+. .-|+.+.+.+++.++.. .-.+.+..++.|++.++...
T Consensus 641 slypvi~Filkn~i~dfy~Ea~dildg~tf~s-keI~pi--mwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~e 716 (970)
T COG5656 641 SLYPVISFILKNEISDFYQEALDILDGYTFMS-KEIEPI--MWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTE 716 (970)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH-HHhhhh--hhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccc
Confidence 35665555666667778888888887776432 222222 22678888888887774 55677888999999988544
No 207
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.65 E-value=0.21 Score=44.39 Aligned_cols=101 Identities=17% Similarity=0.134 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHh
Q 011328 45 NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL 124 (488)
Q Consensus 45 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~ 124 (488)
.....|++.|.-++--. ++....+.+...++.++++|.....+.++..++.+|..+..+++.+...+-+.+++..++.+
T Consensus 106 ~li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred HHHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 34556777887766554 66677777899999999999665448999999999999999899999999999999999999
Q ss_pred hCC--CCHHHHHHHHHHHhhhhCC
Q 011328 125 LSS--PTDDVREQAVWALGNVAGD 146 (488)
Q Consensus 125 L~~--~~~~v~~~a~~~L~~l~~~ 146 (488)
+++ .+.+++-.++..|.-+...
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred HccccccHHHhHHHHHHHHHHHcc
Confidence 987 5688888888888777643
No 208
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.62 E-value=0.56 Score=49.04 Aligned_cols=192 Identities=15% Similarity=0.129 Sum_probs=130.9
Q ss_pred chHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc-CCCCcchHhHHHHHHhHhhcCCchhhH
Q 011328 200 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQ 278 (488)
Q Consensus 200 ~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 278 (488)
.+.+.+-.-+.+.++.-+..++..+............ -...+.+..++... .+.+-.+...++.+|..++........
T Consensus 253 ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~-~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~ 331 (815)
T KOG1820|consen 253 KITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIV-KGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR 331 (815)
T ss_pred hcChHHHHhhhccchHHHHHHHHHHHHHHhccccccc-cCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH
Confidence 3344455556678899999999988887765541111 11123444444443 455677888899999999887665543
Q ss_pred HHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCC
Q 011328 279 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 358 (488)
Q Consensus 279 ~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 358 (488)
.. ..++.+.+++-+... ...++..+..++-.++...+- ..+.+.+...+.++++.++..+...+.......
T Consensus 332 ~~-~~~v~p~lld~lkek-k~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~ 402 (815)
T KOG1820|consen 332 KY-AKNVFPSLLDRLKEK-KSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKL 402 (815)
T ss_pred HH-HHhhcchHHHHhhhc-cHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhc
Confidence 33 336788889988887 777887777776666553221 136777888999999999999888888877654
Q ss_pred CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011328 359 SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 401 (488)
Q Consensus 359 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 401 (488)
++.....-.-.++++.++....+.+.+||..+++++..++..-
T Consensus 403 ~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 403 GPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred CCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence 3211111122357888899999999999999999999887653
No 209
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.62 E-value=0.017 Score=32.73 Aligned_cols=29 Identities=28% Similarity=0.483 Sum_probs=25.4
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011328 74 VVPRFIEFLSRDDFPQLQFEAAWALTNIAS 103 (488)
Q Consensus 74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~ 103 (488)
++|.+++++++++ +++|..|+++|+.++.
T Consensus 1 llp~l~~~l~D~~-~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPS-PEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SS-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCC-HHHHHHHHHHHHHHHh
Confidence 3789999999999 9999999999999875
No 210
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.13 Score=49.92 Aligned_cols=124 Identities=23% Similarity=0.299 Sum_probs=87.3
Q ss_pred CCCHHHHHHh-hCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCC
Q 011328 115 HGAVPIFVRL-LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP 193 (488)
Q Consensus 115 ~g~i~~L~~~-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 193 (488)
.|++..++.. .++.+.++|+.|.-+|+-+|.+++. .+...+++|.++.+..++...+.+|.-.|.+..
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G-- 618 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------LLVGTVELLSESHNFHVRAGVAVALGIACAGTG-- 618 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc--
Confidence 3567777776 5668999999999999999977654 456677888778889999999999988887642
Q ss_pred ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC
Q 011328 194 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 254 (488)
Q Consensus 194 ~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 254 (488)
...++..|-.++.+++.-|++.|+-+++.+.....+....-+. ++...+.+.+.+.
T Consensus 619 ----~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~-~I~k~f~~vI~~K 674 (926)
T COG5116 619 ----DKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVK-RIIKKFNRVIVDK 674 (926)
T ss_pred ----cHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHH-HHHHHHHHHHhhh
Confidence 1235566777778889999999999998877432222111111 4455555555443
No 211
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.48 E-value=3.6 Score=42.25 Aligned_cols=345 Identities=12% Similarity=0.089 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH--hCCCHHHH
Q 011328 44 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI--DHGAVPIF 121 (488)
Q Consensus 44 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~g~i~~L 121 (488)
.-+|.+.++.+....+..- ... ...-.-..+.+++++.++.-++..+++++.-...+-.-..+.+. -......+
T Consensus 501 RiiRRRVa~ilg~Wvsvq~---~~e-~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~l 576 (978)
T KOG1993|consen 501 RIIRRRVAWILGQWVSVQQ---KLE-LKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLL 576 (978)
T ss_pred hHHHHHHHHHHhhhhheec---hHh-HHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHH
Confidence 4567778888888765331 111 11223456778888885477888899998888763222222222 12445555
Q ss_pred HHhhCC-CCHHHHHHHHHHHhhhhCCCchhH-HHHHhcCChHHHHHHhc-ccc-cHhHHHHHHHHHHHhhcCCCCCChhh
Q 011328 122 VRLLSS-PTDDVREQAVWALGNVAGDSPKCR-DLVLSNGALMPLLAQFN-EHA-KLSMLRNATWTLSNFCRGKPQPLFEQ 197 (488)
Q Consensus 122 ~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~l~~L~~ll~-~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~ 197 (488)
.++++. +.-+.+...+.+++.+.....+.. .... .+-.++..+- .++ .+-++...+.+|.++...-.......
T Consensus 577 fkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~---~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~ 653 (978)
T KOG1993|consen 577 FKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYAS---TIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEF 653 (978)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHH---HHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccc
Confidence 566655 566777788888888865432211 1111 1122222222 223 33456667788888876543333333
Q ss_pred hhchHHHHHHhhc--cC-ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCc
Q 011328 198 TRPALPALERLIH--SN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 274 (488)
Q Consensus 198 ~~~~~~~l~~ll~--~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 274 (488)
..-.+|.+-.... ++ ..-..+.+...-.....+.+.....+. ++++.+..++....+ ....++.++....--..
T Consensus 654 ~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~~iE~ste-~L~t~l~Ii~sYilLd~ 730 (978)
T KOG1993|consen 654 YPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLYIIEQSTE-NLPTVLMIISSYILLDN 730 (978)
T ss_pred hHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhcc
Confidence 3333333222222 11 122344444333333333332222232 566777777765443 33344555444332222
Q ss_pred hhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc--CChhHHHHHHHHHH
Q 011328 275 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAIS 352 (488)
Q Consensus 275 ~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~a~~aL~ 352 (488)
.....-...|+.+.+.+++.+- ..+-....+.++..+...++ ........++++.+..-+-. +.+.+...-+..++
T Consensus 731 ~~fl~~y~~~i~k~~~~~l~dv-r~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vva 808 (978)
T KOG1993|consen 731 TVFLNDYAFGIFKKLNDLLDDV-RNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVA 808 (978)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHH
Confidence 2222222346777777777665 44555566666777766544 55666667888887775533 36677777888888
Q ss_pred HhccCCCHHHHHHHHH-CCChHHHHh--------hcC-CCCHHHHHHHHHHHHHHHHhh
Q 011328 353 NATSGGSNEQIKFLVS-QGCIKPLCD--------LLN-CPDPRIVTVCLEGLENILKAG 401 (488)
Q Consensus 353 ~l~~~~~~~~~~~l~~-~~~i~~L~~--------ll~-~~~~~v~~~al~~L~~l~~~~ 401 (488)
.+.... ++....+.+ ..-.+.++. +.+ -.+++-++..+-++..++..+
T Consensus 809 Ri~l~n-~~~~msvlqt~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~t~ 866 (978)
T KOG1993|consen 809 RISLRN-PSLFMSVLQTKNTYDILIAMLIGNWILLFDHINHPKDRKLNTLALSSLLRTN 866 (978)
T ss_pred HHHhcC-hHHHHHHHHhhhhHHHHHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhccC
Confidence 887654 343333332 222233331 122 235666666666666666553
No 212
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=95.43 E-value=2.4 Score=39.98 Aligned_cols=160 Identities=18% Similarity=0.175 Sum_probs=117.1
Q ss_pred hHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHc-CC-hHHHHHHHhcC-----C--------hhHHHHHHH
Q 011328 286 LPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEA-GI-IGPLVNLLLNA-----E--------FEIKKEAAW 349 (488)
Q Consensus 286 ~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~-~~-l~~L~~ll~~~-----~--------~~v~~~a~~ 349 (488)
++.+.+.|.+. ...+...++..+..++. .+......++.. ++ .+.+-+++... + +++|...+.
T Consensus 58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 77888899888 77788899999999998 666666666642 22 34455555321 1 289999999
Q ss_pred HHHHhccCCCHHHHHHHHH-CCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHH
Q 011328 350 AISNATSGGSNEQIKFLVS-QGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK 428 (488)
Q Consensus 350 aL~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 428 (488)
.+..+...+++.....+.+ .+.+..+.+-+..++++++..++..+..-+-.++...+. .+..+=....+.+
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~--------~K~~~fn~~~L~~ 208 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRS--------TKCKLFNEWTLSQ 208 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChh--------hhhhhcCHHHHHH
Confidence 9999988888877777655 467888888899988999999999998655444433322 1222333446888
Q ss_pred HHHhhcCCCH----HHHHHHHHHHHHhcCC
Q 011328 429 IENLQSHDNT----EIYEKAVKILETYWVE 454 (488)
Q Consensus 429 L~~l~~~~~~----~v~~~a~~~l~~~~~~ 454 (488)
|..+...+++ .+.+.+...+..+...
T Consensus 209 l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 209 LASLYSRDGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred HHHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence 9999888888 8999999999988763
No 213
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=95.40 E-value=2 Score=38.93 Aligned_cols=212 Identities=14% Similarity=0.116 Sum_probs=142.2
Q ss_pred HHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh---hHHHhhCCChHHHHHHhcccch-hhHHHHHHHHHHH
Q 011328 236 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ---TQCIINHQALPCLLDLLTQNYK-KSIKKEACWTISN 311 (488)
Q Consensus 236 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~~~~~~L~~lL~~~~~-~~v~~~a~~~L~n 311 (488)
+.+.+.|.+..++..+..-+-+.+..++.+..++-...-.. ....+.. -.+.+..++....+ +++-..+...+..
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t-~~e~~~~lv~~~~~~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLET-NPEILDNLVKGYENTPEIALTCGNMLRE 151 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHh-CHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 45677799999999999888888888888888887632211 1111111 12233333333322 4555555555666
Q ss_pred HhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCC----hHHHHhhcCCCCHHHH
Q 011328 312 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGC----IKPLCDLLNCPDPRIV 387 (488)
Q Consensus 312 l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~----i~~L~~ll~~~~~~v~ 387 (488)
+.++ +...+.+....-+.....+++.+..++...|......+......-....+.. +. .+.-..++.+.+.-++
T Consensus 152 cirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~-n~d~ff~e~~~~Ll~s~Nyvtk 229 (342)
T KOG1566|consen 152 CIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIR-NYDNFFAEVYEKLLRSENYVTK 229 (342)
T ss_pred HHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHh-ChhhhHHHHHHHHhcccceehH
Confidence 6555 5566667777788889999999999999999999988876654344444443 32 4446678888888888
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 011328 388 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDE 459 (488)
Q Consensus 388 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~ 459 (488)
.+++.++..++-...+... ....+.+...++.+..++..++..++-.|-.+-.-+.-..++.+
T Consensus 230 rqs~kllg~llldr~N~~~---------M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q 292 (342)
T KOG1566|consen 230 RQSLKLLGELLLDRSNSAV---------MTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQ 292 (342)
T ss_pred HHHHHhHHHHHhCCCcHHH---------HHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCc
Confidence 9999999988755443322 35566656668888888888888888888777665555544433
No 214
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.39 E-value=0.19 Score=41.55 Aligned_cols=147 Identities=10% Similarity=0.055 Sum_probs=89.5
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011328 73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 152 (488)
Q Consensus 73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (488)
..++.|+++|+.+.+..+|..++++++.+-.-+|-..+.+.... +.- .-...+......... ........ +
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~--~~~~~~~~~~~~~l~-~~~~~~~~----e 80 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSK--SSENSNDESTDISLP-MMGISPSS----E 80 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Ccc--ccccccccchhhHHh-hccCCCch----H
Confidence 46788889998887689999999999999886665444322111 100 001111222222111 11111111 2
Q ss_pred HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 011328 153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 228 (488)
Q Consensus 153 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~ 228 (488)
...-.-++..|++.|++.+-..-...++.++.++..............++|.++..+++.+...++..+.-|+.+.
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 2222335778888885444444455677777777765555567778899999999999877788887777766653
No 215
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.36 E-value=0.83 Score=44.41 Aligned_cols=259 Identities=13% Similarity=0.120 Sum_probs=140.9
Q ss_pred HHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-C
Q 011328 50 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-P 128 (488)
Q Consensus 50 a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~-~ 128 (488)
.-..|..+....+.......++...+..|+.++.++| ++-|.....++.++-......|..+.. .+...+.+++.. .
T Consensus 110 vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~ 187 (409)
T PF01603_consen 110 VYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETE 187 (409)
T ss_dssp HHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcc
Confidence 3344555544432222333556678889999999999 999999999999987655666665543 445666676664 4
Q ss_pred CHHHHHHHHHHHhhhhCCCc-hhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHH
Q 011328 129 TDDVREQAVWALGNVAGDSP-KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 207 (488)
Q Consensus 129 ~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ 207 (488)
...-...++..++.+..+-. ..++.-.. -....++.+.....-.........++..+...++ .....++..+++
T Consensus 188 ~~~gI~elLeil~sii~gf~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp----~l~~~~i~~llk 262 (409)
T PF01603_consen 188 RHNGIAELLEILGSIINGFAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP----SLAEPVIKGLLK 262 (409)
T ss_dssp --STHHHHHHHHHHHHTT--SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G----GGHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHhccCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc----hhHHHHHHHHHH
Confidence 55566677888888875421 11111100 0112233333222222333445555555554332 111223333333
Q ss_pred hhccCChhHHHHHHHHHHHhccCCc-hhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhC---
Q 011328 208 LIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH--- 283 (488)
Q Consensus 208 ll~~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--- 283 (488)
.=-..+..-....+.-+..+...-+ .....+ ...++..+..++.+++..|.+.|+..+.|= .. ..++..
T Consensus 263 ~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i-~~~lf~~la~ci~S~h~qVAErAl~~w~n~-----~~-~~li~~~~~ 335 (409)
T PF01603_consen 263 HWPKTNSQKEVLFLNELEEILEVLPPEEFQKI-MVPLFKRLAKCISSPHFQVAERALYFWNNE-----YF-LSLISQNSR 335 (409)
T ss_dssp HS-SS-HHHHHHHHHHHHHHHTT--HHHHHHH-HHHHHHHHHHHHTSSSHHHHHHHHGGGGSH-----HH-HHHHHCTHH
T ss_pred hCCCCCchhHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHCCH-----HH-HHHHHhChH
Confidence 3333455555555556666655433 222222 235678888888999999998888765442 11 122221
Q ss_pred CChHHHHHHhcc-----cchhhHHHHHHHHHHHHhcCCHHHHHHH
Q 011328 284 QALPCLLDLLTQ-----NYKKSIKKEACWTISNITAGNVNQIQAI 323 (488)
Q Consensus 284 ~~~~~L~~lL~~-----~~~~~v~~~a~~~L~nl~~~~~~~~~~l 323 (488)
.+++.+...+.. - +..+|..|..++.-+..-+++....+
T Consensus 336 ~i~p~i~~~L~~~~~~HW-n~~Vr~~a~~vl~~l~~~d~~lf~~~ 379 (409)
T PF01603_consen 336 VILPIIFPALYRNSKNHW-NQTVRNLAQNVLKILMEMDPKLFDKC 379 (409)
T ss_dssp HHHHHHHHHHSSTTSS-S-STTHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 356666666532 2 67899999999999988767755443
No 216
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.33 E-value=3.5 Score=42.27 Aligned_cols=318 Identities=12% Similarity=0.086 Sum_probs=176.5
Q ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCccHHHHH--HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 33 PAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVI--QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 33 ~~l~~~L~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
..++++|+.. |..+++.+++.+.-.+.+-+ -..+.+. -.+....+.++++.-..-+.|...+..++.+.....+..
T Consensus 529 ~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~n-F~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I 607 (978)
T KOG1993|consen 529 CAFLNLLQDQNDLVVRLTTARTLKLVVDDWN-FSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHI 607 (978)
T ss_pred HHHHHhcCccccceeehHHHHHHHHhhhhcc-CChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 3677888865 77889999999998876541 1112111 245666777777765435677778888877766333322
Q ss_pred HHHHhCCCHHHHHHhhC--CCCHHHHHHHHHHHhhhhC----CCchhHHHHHhcCChHHHHHHhcccccHh---HHHHHH
Q 011328 110 RVVIDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAG----DSPKCRDLVLSNGALMPLLAQFNEHAKLS---MLRNAT 180 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~--~~~~~v~~~a~~~L~~l~~----~~~~~~~~~~~~~~l~~L~~ll~~~~~~~---v~~~a~ 180 (488)
.... ..++..+-.+-+ ++.+-+|...+.+|.++.. .+..+. .++-+++++-.+-++++ ..+.+.
T Consensus 608 ~P~~-~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~------~fL~pVIel~~D~~sP~hv~L~EDgm 680 (978)
T KOG1993|consen 608 APYA-STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFY------PFLYPVIELSTDPSSPEHVYLLEDGM 680 (978)
T ss_pred hHHH-HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccch------HHHHHHHHHhcCCCCCceeehhhhHH
Confidence 2111 112222222222 2567788888888888863 122221 12334555442222221 333444
Q ss_pred HHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc-cCCchhHHHHHHhCCHHHHHHhcCCCCcchH
Q 011328 181 WTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLRHPSPSVL 259 (488)
Q Consensus 181 ~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~-~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~ 259 (488)
..-.....+. ..-....-+.+|.+...+......++ .++.++.... -.+....+ -...|+...+..++.+-..+-.
T Consensus 681 eLW~~~L~n~-~~l~p~ll~L~p~l~~~iE~ste~L~-t~l~Ii~sYilLd~~~fl~-~y~~~i~k~~~~~l~dvr~egl 757 (978)
T KOG1993|consen 681 ELWLTTLMNS-QKLTPELLLLFPHLLYIIEQSTENLP-TVLMIISSYILLDNTVFLN-DYAFGIFKKLNDLLDDVRNEGL 757 (978)
T ss_pred HHHHHHHhcc-cccCHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHHhhHHHH
Confidence 3333333333 22223345677788877765443333 3333333322 22322222 2233778888888877666667
Q ss_pred hHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHh-cccchhhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHH-
Q 011328 260 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL-TQNYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLL- 336 (488)
Q Consensus 260 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~ll- 336 (488)
...+.++..+...++ ........++++.+..-+ .....+-+-..-+.+++.++..+++....+++ ..-.+.++..+
T Consensus 758 ~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~~li 836 (978)
T KOG1993|consen 758 QAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIAMLI 836 (978)
T ss_pred HHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHHHHH
Confidence 777888887777555 334444567777766644 33326667777777888887777777766654 22233333211
Q ss_pred -------hc-CChhHHHHHHHHHHHhccCCCHHH
Q 011328 337 -------LN-AEFEIKKEAAWAISNATSGGSNEQ 362 (488)
Q Consensus 337 -------~~-~~~~v~~~a~~aL~~l~~~~~~~~ 362 (488)
.. .+++-|+--+-|+..+...+.+..
T Consensus 837 ~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~i 870 (978)
T KOG1993|consen 837 GNWILLFDHINHPKDRKLNTLALSSLLRTNNPDI 870 (978)
T ss_pred HHHHHHcccCCCHHHhhHHHHHHHHHhccCCcHH
Confidence 11 267777777888888877654443
No 217
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.32 E-value=2.1 Score=38.68 Aligned_cols=223 Identities=15% Similarity=0.098 Sum_probs=133.9
Q ss_pred HHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc-ccccHhHHHHHHHHHHHhhcCCCCCChhhh
Q 011328 120 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQPLFEQT 198 (488)
Q Consensus 120 ~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 198 (488)
.|-..|.++++.+|..++..|+.+...-+.. .....-+..++.... +-.|......++.++..|..... ......
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~-~~~~~~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN-FSPESA 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC-CChhhH
Confidence 4556788899999999999999887654421 122223445555442 11355555556777777764432 111223
Q ss_pred hchHHHHHHhhc--cCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHHHhHhhcCCch
Q 011328 199 RPALPALERLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDM 275 (488)
Q Consensus 199 ~~~~~~l~~ll~--~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~ 275 (488)
..++..+.+-.. +.-...|..+...+..+..+.....+ -...+.+..+++.+.. .+|.-...+...+..+....+-
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~-~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQ-SMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHH-hchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 334444443222 22467788888888888866443322 1223667778888866 4677777777777777664431
Q ss_pred hhHHHhhCCChHHHHHHhcc--------cc-h--hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 011328 276 QTQCIINHQALPCLLDLLTQ--------NY-K--KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK 344 (488)
Q Consensus 276 ~~~~~~~~~~~~~L~~lL~~--------~~-~--~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 344 (488)
....+-+.+.+.. +. + .-.+......|.++...++.. ..-.+|.|++-|.++...+|
T Consensus 158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~K 225 (262)
T PF14500_consen 158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSVK 225 (262)
T ss_pred -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHHH
Confidence 2334445554421 11 1 124455555666665554432 22378999999999999999
Q ss_pred HHHHHHHHHhccCCC
Q 011328 345 KEAAWAISNATSGGS 359 (488)
Q Consensus 345 ~~a~~aL~~l~~~~~ 359 (488)
..++.+|...+..-+
T Consensus 226 ~D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 226 LDSLQTLKACIENYG 240 (262)
T ss_pred HHHHHHHHHHHHHCC
Confidence 999999988876443
No 218
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.32 E-value=0.18 Score=35.03 Aligned_cols=66 Identities=24% Similarity=0.358 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccCCCHHHHHHHHHCC
Q 011328 302 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQG 370 (488)
Q Consensus 302 ~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~ 370 (488)
.+.++|+++++++. +.....+.+.++++.++++.... ...+|..|..+|+-++. +.+..+.|.+.|
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence 57899999999875 55566666789999999998864 77899999999999986 446677766654
No 219
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.31 E-value=1.6 Score=39.37 Aligned_cols=224 Identities=14% Similarity=0.059 Sum_probs=128.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcC--CCChhHHHHHHHHHHHhcCCCchhhHHH
Q 011328 35 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR--DDFPQLQFEAAWALTNIASGTSENTRVV 112 (488)
Q Consensus 35 l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 112 (488)
|=..|.++|+.+|..|+..|..++..-+.... ...-+..|++.+.+ .+ ......++.++..+... .......
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L----~~~ev~~L~~F~~~rl~D-~~~~~~~l~gl~~L~~~-~~~~~~~ 77 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFL----SRQEVQVLLDFFCSRLDD-HACVQPALKGLLALVKM-KNFSPES 77 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhc----cHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHhC-cCCChhh
Confidence 44577899999999999999999886532221 11223444444321 23 34444456777666642 2111111
Q ss_pred HhCCCHHHHHHhhC--CCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC
Q 011328 113 IDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 190 (488)
Q Consensus 113 ~~~g~i~~L~~~L~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~ 190 (488)
...++..+.+-.+ +.....|..+...+..+.......- .-...+.+..++..+....||.-...+...+..+...-
T Consensus 78 -~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l-~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~ 155 (262)
T PF14500_consen 78 -AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREAL-QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF 155 (262)
T ss_pred -HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHH-HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 1112333333222 2446778888888888876532211 11223467788888877779988888888888777654
Q ss_pred CCCChhhhhchHHHHHHhhc-----cC-Ch--hHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHH
Q 011328 191 PQPLFEQTRPALPALERLIH-----SN-DD--EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPA 262 (488)
Q Consensus 191 ~~~~~~~~~~~~~~l~~ll~-----~~-~~--~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 262 (488)
+. .......++.+....- .+ |+ -.++..-..|.......+.. ..-.++.|++-|.+..+.++..+
T Consensus 156 ~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~K~D~ 228 (262)
T PF14500_consen 156 DI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSVKLDS 228 (262)
T ss_pred cc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHHHHHH
Confidence 32 2222333333333321 11 22 12344444444444433322 23678999999999999999999
Q ss_pred HHHHhHhhcCC
Q 011328 263 LRTVGNIVTGD 273 (488)
Q Consensus 263 ~~~L~~l~~~~ 273 (488)
+.+|...+...
T Consensus 229 L~tL~~c~~~y 239 (262)
T PF14500_consen 229 LQTLKACIENY 239 (262)
T ss_pred HHHHHHHHHHC
Confidence 99998877643
No 220
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.26 E-value=3.8 Score=43.11 Aligned_cols=239 Identities=16% Similarity=0.189 Sum_probs=141.6
Q ss_pred hchHHHHHHhhcc-----CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC----CCC----cchHhHHHHH
Q 011328 199 RPALPALERLIHS-----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR----HPS----PSVLIPALRT 265 (488)
Q Consensus 199 ~~~~~~l~~ll~~-----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~----~~~----~~v~~~a~~~ 265 (488)
.+++..++.++.+ .........+..|...+... ...+.+++.+.++.|+..+. .+. +.+.+..+.+
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~-~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVK-VNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhH-HHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 3677777777764 23456666677777666654 44577888999999888774 333 5677777777
Q ss_pred HhHhhcCCchhhH----HHh--------hCCChHHHHHHhcccc---hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChH
Q 011328 266 VGNIVTGDDMQTQ----CII--------NHQALPCLLDLLTQNY---KKSIKKEACWTISNITAGNVNQIQAIIEAGIIG 330 (488)
Q Consensus 266 L~~l~~~~~~~~~----~~~--------~~~~~~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~ 330 (488)
+..+......... ... ....+..+++.+.++. ++.+....+++|-+|+.++++..+.+++. +.
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~ 272 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FK 272 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HH
Confidence 7666643221100 000 1123566666665542 57888999999999999988888877763 23
Q ss_pred HHHHHHhcC---ChhHHHHHHHHHHHhccCC-----CHHHHHHHHHCCChHHHHhhcCCC--------CHH--------H
Q 011328 331 PLVNLLLNA---EFEIKKEAAWAISNATSGG-----SNEQIKFLVSQGCIKPLCDLLNCP--------DPR--------I 386 (488)
Q Consensus 331 ~L~~ll~~~---~~~v~~~a~~aL~~l~~~~-----~~~~~~~l~~~~~i~~L~~ll~~~--------~~~--------v 386 (488)
..+++=.-+ ..+- ...+.+++.++.+- ....+..+++.|++...++++... .++ -
T Consensus 273 p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps 351 (802)
T PF13764_consen 273 PYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS 351 (802)
T ss_pred HhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence 222321111 1111 23355555555432 246678888999998888876532 111 2
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhh-cCCCHHHHHHHHHHHHHhcCC
Q 011328 387 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 387 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~-~~~~~~v~~~a~~~l~~~~~~ 454 (488)
...++..|.-++..-.. ...+...+++..+..|- .+...+|-..|-.+|+.+-+.
T Consensus 352 Lp~iL~lL~GLa~gh~~-------------tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~ 407 (802)
T PF13764_consen 352 LPYILRLLRGLARGHEP-------------TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAEN 407 (802)
T ss_pred HHHHHHHHHHHHhcCHH-------------HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcC
Confidence 34455555555443221 12223455677777773 334667888888888877663
No 221
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.26 E-value=0.3 Score=48.74 Aligned_cols=181 Identities=16% Similarity=0.188 Sum_probs=123.8
Q ss_pred hchHHHHHHhhcc----CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC-CCCcchHhHHHHHHhHhhcCC
Q 011328 199 RPALPALERLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGD 273 (488)
Q Consensus 199 ~~~~~~l~~ll~~----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~ 273 (488)
..+-|.+.+...+ .|+.++..|.-+|..+-.-+.+... ..+|.++..+. +++|.+|..|.-.++.++...
T Consensus 891 s~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcf 965 (1128)
T COG5098 891 SNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCF 965 (1128)
T ss_pred hhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceeh
Confidence 3344555556554 6788888888888776544332222 56788888886 789999999999998887654
Q ss_pred chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHH
Q 011328 274 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 353 (488)
Q Consensus 274 ~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~ 353 (488)
..... ..-..|.+-|.+. +..||+.+..++.++...+.- --.|-++.+..+|.++|..+...|-..+..
T Consensus 966 N~~~d-----e~t~yLyrrL~De-~~~V~rtclmti~fLilagq~-----KVKGqlg~ma~~L~deda~Isdmar~fft~ 1034 (1128)
T COG5098 966 NTTAD-----EHTHYLYRRLGDE-DADVRRTCLMTIHFLILAGQL-----KVKGQLGKMALLLTDEDAEISDMARHFFTQ 1034 (1128)
T ss_pred hhhhH-----HHHHHHHHHhcch-hhHHHHHHHHHHHHHHHccce-----eeccchhhhHhhccCCcchHHHHHHHHHHH
Confidence 43333 2345688888888 999999999999999764221 124678889999999999999999999999
Q ss_pred hccCCCHHHHHHHHHCCChHHHHhhcCC---CCHHHHHHHHHHHHHHHHhhh
Q 011328 354 ATSGGSNEQIKFLVSQGCIKPLCDLLNC---PDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 354 l~~~~~~~~~~~l~~~~~i~~L~~ll~~---~~~~v~~~al~~L~~l~~~~~ 402 (488)
++...+. .-+|+++.+..+-.+ .+.. -...++.|..++....
T Consensus 1035 ~a~KdNt------~yn~fidifs~ls~~ae~g~e~-fk~II~FLt~fI~ker 1079 (1128)
T COG5098 1035 IAKKDNT------MYNGFIDIFSTLSSDAENGQEP-FKLIIGFLTDFISKER 1079 (1128)
T ss_pred HHhcccc------hhhhhHHHHHHcCchhhcCCCc-HHHHHHHHHHHHHHHH
Confidence 9875432 123555555444322 2222 2455666666665554
No 222
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.24 E-value=2.6 Score=43.97 Aligned_cols=194 Identities=19% Similarity=0.201 Sum_probs=114.4
Q ss_pred HHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHH--HHHHhhccCCh-h
Q 011328 139 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP--ALERLIHSNDD-E 215 (488)
Q Consensus 139 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~--~l~~ll~~~~~-~ 215 (488)
+++++....+..-+.+.+.++...+...+..-...+++..++..+.+++...+..........+. .+-.++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 45566666666677888899999999999766778889999999999987653333322222222 33334444343 6
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHH-HHHHhc
Q 011328 216 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPC-LLDLLT 294 (488)
Q Consensus 216 v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~-L~~lL~ 294 (488)
.-..++..+..+...+++....... +.+...-..++..... ........ ..+.. +.+++.
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r---------------~~~~~~l~e~i~~~~~---~~~~~~~~-~~f~~~~~~il~ 634 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFR---------------NSVNELLVEAISRWLT---SEIRVIND-RSFFPRILRILR 634 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccch---------------HHHHHHHHHHhhccCc---cceeehhh-hhcchhHHHHhc
Confidence 6677777777766554321111111 1122222222222221 11111222 22223 666666
Q ss_pred ccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHH
Q 011328 295 QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAI 351 (488)
Q Consensus 295 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL 351 (488)
....+....-|+|++.++...+++..+.+.+.++++.+.+.-... ..+++..+...+
T Consensus 635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 655778889999999999998788888888888888776654433 334444444443
No 223
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=95.21 E-value=2.1 Score=38.05 Aligned_cols=202 Identities=19% Similarity=0.169 Sum_probs=116.2
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHH
Q 011328 75 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV 154 (488)
Q Consensus 75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 154 (488)
++.|+.-+....+++.+...+..|..++........ -++..+..+.+.+..+.+..+.+.+..+...++...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 344555344443489999999999999984412222 235677777777777777788888888876554321
Q ss_pred HhcCChHHHHHHh---------cccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh-ccCChhHHHHHHHHH
Q 011328 155 LSNGALMPLLAQF---------NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVLTDACWAL 224 (488)
Q Consensus 155 ~~~~~l~~L~~ll---------~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll-~~~~~~v~~~al~~L 224 (488)
+.+..++..+ ..+...+.......++..+|...|. .-...++.+..++ ++.++.++..++.++
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 2344444331 1122334445556778888887755 5567788888888 788899999999999
Q ss_pred HHhccCCchhHHHHHHhCCHHHHHHhcCCC-CcchHhHHHHHHhHhhcCCch-hhHHHhhCCChHHHHHHhccc
Q 011328 225 SYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTGDDM-QTQCIINHQALPCLLDLLTQN 296 (488)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~L~~lL~~~ 296 (488)
..++...--. + ......+.+-+..+ .|.+....+..+..+....-+ .........++..+.++..+.
T Consensus 147 ~~Lc~~~vvd---~--~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~ 215 (234)
T PF12530_consen 147 APLCEAEVVD---F--YSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS 215 (234)
T ss_pred HHHHHHhhcc---H--HHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence 9999432111 1 12334444445333 344444333333333222111 111123334555666665555
No 224
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=95.16 E-value=5.1 Score=42.16 Aligned_cols=150 Identities=12% Similarity=0.100 Sum_probs=97.8
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHh
Q 011328 299 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 377 (488)
Q Consensus 299 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ 377 (488)
+.++..+..++++++.......+ ..+|.|++-|+.. ...+|.+...+++.++..- ..+.+ ..++.+..
T Consensus 945 ~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y-----Tam~d-~YiP~I~~ 1013 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY-----TAMTD-RYIPMIAA 1013 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH-----HHHHH-HhhHHHHH
Confidence 45778888889999875444322 3678888877765 5678888888888776532 11222 57899999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 011328 378 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDE 457 (488)
Q Consensus 378 ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 457 (488)
.|.++++-++.+++-.|.+++..+--- |+..+ .++-+.. +-+.+++++..|...+......++.
T Consensus 1014 ~L~Dp~~iVRrqt~ilL~rLLq~~~vK-----------w~G~L----f~Rf~l~-l~D~~edIr~~a~f~~~~vL~~~~P 1077 (1529)
T KOG0413|consen 1014 SLCDPSVIVRRQTIILLARLLQFGIVK-----------WNGEL----FIRFMLA-LLDANEDIRNDAKFYISEVLQSEEP 1077 (1529)
T ss_pred HhcCchHHHHHHHHHHHHHHHhhhhhh-----------cchhh----HHHHHHH-HcccCHHHHHHHHHHHHHHHhhcCc
Confidence 999999999999999999998654311 11111 1222222 3445789999999888888876543
Q ss_pred CCCCCCCCCCCCccccCCCC
Q 011328 458 DEPLPPGDATQAGFGFAGNG 477 (488)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~ 477 (488)
.+++----|.+|-||+-|
T Consensus 1078 --~~f~~~FVe~i~~ln~~~ 1095 (1529)
T KOG0413|consen 1078 --NFFPLNFVEYIIALNQAR 1095 (1529)
T ss_pred --cchHHHHHHHHHHHHHHH
Confidence 111111124566666654
No 225
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=95.00 E-value=2.2 Score=40.93 Aligned_cols=231 Identities=12% Similarity=0.104 Sum_probs=133.4
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHhcCCC---chhhHHHHhCCCHHHHHHhhCC-------CCHHHHHHHHHHHhhhhCCC
Q 011328 78 FIEFLSRDDFPQLQFEAAWALTNIASGT---SENTRVVIDHGAVPIFVRLLSS-------PTDDVREQAVWALGNVAGDS 147 (488)
Q Consensus 78 L~~lL~~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~g~i~~L~~~L~~-------~~~~v~~~a~~~L~~l~~~~ 147 (488)
+..+++..+ ++-|..|+......+... ..+++.+++.=+.+.+-+++.+ ++.-.+..++.+|..+|++.
T Consensus 16 ~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 16 CLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred HHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 555666666 688889999999998833 3456667788778888888876 23456777888888888765
Q ss_pred chh-HHHHHhcCChHHHHHHhcccccHh------HHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHH-
Q 011328 148 PKC-RDLVLSNGALMPLLAQFNEHAKLS------MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTD- 219 (488)
Q Consensus 148 ~~~-~~~~~~~~~l~~L~~ll~~~~~~~------v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~- 219 (488)
.-. .+.++ +.++.+.+.+.+..|++ +...+..+|..++...+........|.++.+.++-.-++...-..
T Consensus 95 ElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~al 172 (698)
T KOG2611|consen 95 ELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMAL 172 (698)
T ss_pred hhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence 321 12232 25778888875544444 788888999999988777777888999999998766443222111
Q ss_pred HHHHHHHhcc---CCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch------hhHHHhhCCChHHHH
Q 011328 220 ACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM------QTQCIINHQALPCLL 290 (488)
Q Consensus 220 al~~L~~l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~------~~~~~~~~~~~~~L~ 290 (488)
++.++.-... .-++....+.. ++..+..-+...+...+...+..|..+...... .+..........-+.
T Consensus 173 al~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G~~ 250 (698)
T KOG2611|consen 173 ALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTGVV 250 (698)
T ss_pred HHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHHHH
Confidence 2222211111 11111121211 133333333334456677788888755442221 110111112233355
Q ss_pred HHhcccchhhHHHHHHHHHHHHh
Q 011328 291 DLLTQNYKKSIKKEACWTISNIT 313 (488)
Q Consensus 291 ~lL~~~~~~~v~~~a~~~L~nl~ 313 (488)
.+|++.-.+.-|..|+....|+.
T Consensus 251 ~IL~~kv~p~qr~pAL~Laa~~~ 273 (698)
T KOG2611|consen 251 AILQNKVAPSQRLPALILAANMM 273 (698)
T ss_pred HHHhcccCchhcChHHHHHHHHH
Confidence 56655544555555665555554
No 226
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=94.99 E-value=1.6 Score=41.76 Aligned_cols=275 Identities=17% Similarity=0.168 Sum_probs=138.8
Q ss_pred HHHHHHhhC-CCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHh-hcCCCCCCh
Q 011328 118 VPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF-CRGKPQPLF 195 (488)
Q Consensus 118 i~~L~~~L~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l-~~~~~~~~~ 195 (488)
+..++.-+. +.+..+|..++--|+.-+.+ +.++..+...|....+++.+....+..+...+..++..+ +.+......
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 455555555 35678898888888888875 558999999999999999995555543555555555444 444344444
Q ss_pred hhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc---------CCCCcchHhHHHHH
Q 011328 196 EQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL---------RHPSPSVLIPALRT 265 (488)
Q Consensus 196 ~~~~~~~~~l~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL---------~~~~~~v~~~a~~~ 265 (488)
.........+..++... ...+....- . ..........+ ..+..+...+ ......-+..|+.+
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~-~~~~~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~ 173 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------S-SRKKNLSKVQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLALLA 173 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchh------h-hhhhhhhHHHH-HHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence 44455666667777611 000000000 0 00000010110 1111111221 01223345556666
Q ss_pred HhHhhcC--------------CchhhHHHhhCCChHHHHHHhcc----cc-----------hhhHHHHHHHHHHHHhcCC
Q 011328 266 VGNIVTG--------------DDMQTQCIINHQALPCLLDLLTQ----NY-----------KKSIKKEACWTISNITAGN 316 (488)
Q Consensus 266 L~~l~~~--------------~~~~~~~~~~~~~~~~L~~lL~~----~~-----------~~~v~~~a~~~L~nl~~~~ 316 (488)
+-.++.. .+.....+.+.|+++.+++++.. .. +...-..++.+|-|.+..+
T Consensus 174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 6555311 11123344456778888888752 10 1122345667777777655
Q ss_pred HHHHHHHHH--cCChHHHHHHH----hcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhc-------C---
Q 011328 317 VNQIQAIIE--AGIIGPLVNLL----LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL-------N--- 380 (488)
Q Consensus 317 ~~~~~~l~~--~~~l~~L~~ll----~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll-------~--- 380 (488)
.++..++.. .+.++.+...+ ..........+++.+.|++-+. ++....+...++...+..+. .
T Consensus 254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n-~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~ 332 (361)
T PF07814_consen 254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNN-PSACEEFASPKLGQQLGLIVTSFFCVLSLPN 332 (361)
T ss_pred ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCC-ccchHhhhhhHhccchHHHHHhhcccccccc
Confidence 555555443 22333333322 2223444677888888987543 34444444433322221111 1
Q ss_pred ----CCCHHHHHHHHHHHHHHHHhhh
Q 011328 381 ----CPDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 381 ----~~~~~v~~~al~~L~~l~~~~~ 402 (488)
...-++...++.++.|+++..+
T Consensus 333 ~~~~~~~~D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 333 YVPEESSFDILILALGLLINLVEHSE 358 (361)
T ss_pred cccccccchHHHHHHHhHHHheeeCc
Confidence 1123566667777777766544
No 227
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.96 E-value=0.68 Score=39.01 Aligned_cols=144 Identities=17% Similarity=0.133 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHHhcCC-Cch----hhHHHHh------CCCHHHH-HHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHh
Q 011328 89 QLQFEAAWALTNIASG-TSE----NTRVVID------HGAVPIF-VRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS 156 (488)
Q Consensus 89 ~v~~~a~~~L~~l~~~-~~~----~~~~~~~------~g~i~~L-~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 156 (488)
++|..|+.+|..++.. ++. ....++- .+.-+.| .-++.++++.+|..|+.++..+..+...+-....+
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3677888888888874 211 1112221 1123333 44567789999999999999987654322111111
Q ss_pred cC-------------------ChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCC--hhhhhchHHHHHHhhccCChh
Q 011328 157 NG-------------------ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL--FEQTRPALPALERLIHSNDDE 215 (488)
Q Consensus 157 ~~-------------------~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~~~~~l~~ll~~~~~~ 215 (488)
.. .-..|+..+....+..+....+.++..+....|..+ ......++..+..++.+.|.+
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 11 123345555556678888899999999998875443 334566777777888899999
Q ss_pred HHHHHHHHHHHhccCCc
Q 011328 216 VLTDACWALSYLSDGTN 232 (488)
Q Consensus 216 v~~~al~~L~~l~~~~~ 232 (488)
++..++.+++.+....+
T Consensus 161 v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999998876543
No 228
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.92 E-value=4.4 Score=40.15 Aligned_cols=110 Identities=20% Similarity=0.183 Sum_probs=80.8
Q ss_pred hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCc
Q 011328 195 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 274 (488)
Q Consensus 195 ~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 274 (488)
...+.+.+..+++.+.+++..|+..++..|..++..-.+. ...+-.+++..|.+-+-+..+.||..|+.+|+.+-....
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 4566788888888888999999999999999888655432 334445778888888878888999999999988754322
Q ss_pred hhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHH
Q 011328 275 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 310 (488)
Q Consensus 275 ~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~ 310 (488)
.. +..+...+..+++...+.+||+.|+.-+.
T Consensus 165 ne-----en~~~n~l~~~vqnDPS~EVRr~allni~ 195 (885)
T COG5218 165 NE-----ENRIVNLLKDIVQNDPSDEVRRLALLNIS 195 (885)
T ss_pred Ch-----HHHHHHHHHHHHhcCcHHHHHHHHHHHee
Confidence 11 12344567788877668899988765443
No 229
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.86 E-value=0.19 Score=34.97 Aligned_cols=67 Identities=16% Similarity=0.228 Sum_probs=52.0
Q ss_pred HhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 011328 259 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 327 (488)
Q Consensus 259 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 327 (488)
.+.|++++++++. .+.....+.+.++++.++++..+.+...+|-.+.++|+-++.. .+..+.+-+.|
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence 4689999999988 4445555667799999999998776889999999999999875 55455444443
No 230
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.85 E-value=1.3 Score=43.18 Aligned_cols=158 Identities=11% Similarity=0.118 Sum_probs=113.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCC---hhHHHHHHHHHHHhcCCCch
Q 011328 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF---PQLQFEAAWALTNIASGTSE 107 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~---~~v~~~a~~~L~~l~~~~~~ 107 (488)
....+.+.+.+++...+..+...+..+.. + ......++...++..|.+++.+++. .++...+++++..+....--
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~-d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvv 161 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSL-D-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVV 161 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccc-c-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhcee
Confidence 34578889999999999888888888543 3 5678899999999999999988762 45666667777666553221
Q ss_pred hhHHHHhCCCHHHHHHhhC--CCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHH
Q 011328 108 NTRVVIDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 185 (488)
Q Consensus 108 ~~~~~~~~g~i~~L~~~L~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~ 185 (488)
... .+...++.....+.. ..+..+-..|+..|-++...++..+..+.+.-.+..++..+ +..+..++..|...+..
T Consensus 162 sW~-~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~na 239 (713)
T KOG2999|consen 162 SWE-SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNA 239 (713)
T ss_pred eee-ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence 111 112233444444432 25667778889999999888877788888888899999999 77788888888888877
Q ss_pred hhcCCCC
Q 011328 186 FCRGKPQ 192 (488)
Q Consensus 186 l~~~~~~ 192 (488)
+....+.
T Consensus 240 l~~~a~~ 246 (713)
T KOG2999|consen 240 LFRKAPD 246 (713)
T ss_pred HHhhCCh
Confidence 7765533
No 231
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=94.79 E-value=0.77 Score=47.72 Aligned_cols=199 Identities=16% Similarity=0.115 Sum_probs=108.8
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC----CCHHHHHHHHHHHhhhhC----
Q 011328 74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS----PTDDVREQAVWALGNVAG---- 145 (488)
Q Consensus 74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~----~~~~v~~~a~~~L~~l~~---- 145 (488)
.+..+.+++.+.. .. -..|...+..+.......-. ..+..+..+++. .++.++..|+.+++.+..
T Consensus 396 av~~i~~~I~~~~-~~-~~ea~~~l~~l~~~~~~Pt~-----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKK-LT-DDEAAQLLASLPFHVRRPTE-----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT--S--HHHHHHHHHHHHHT-----H-----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC-CC-HHHHHHHHHHHHhhcCCCCH-----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 4555666666644 11 22344445444432212222 235566666654 567888888888888752
Q ss_pred CC-----chhHHHHHhcCChHHHHHHhc---ccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC---Ch
Q 011328 146 DS-----PKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN---DD 214 (488)
Q Consensus 146 ~~-----~~~~~~~~~~~~l~~L~~ll~---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~---~~ 214 (488)
.. ............++.+...+. ...+..-+..++.+|+|+... ..++.+..++... ..
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-H
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccch
Confidence 21 000011122235666666664 234557778899999998643 5778888888765 68
Q ss_pred hHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC--CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHH
Q 011328 215 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL 292 (488)
Q Consensus 215 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l 292 (488)
.+|..|++++..+....++.. .+.+++++.+ .++++|..|+..|... +|.. ..+..+...
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P~~-------~~l~~i~~~ 600 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMRC---NPSP-------SVLQRIAQS 600 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHHT------H-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHhc---CCCH-------HHHHHHHHH
Confidence 889999999998876655332 2566666654 4567888887766442 2322 235567777
Q ss_pred hcccchhhHHHHHHH
Q 011328 293 LTQNYKKSIKKEACW 307 (488)
Q Consensus 293 L~~~~~~~v~~~a~~ 307 (488)
+..+.+..|......
T Consensus 601 l~~E~~~QV~sfv~S 615 (618)
T PF01347_consen 601 LWNEPSNQVASFVYS 615 (618)
T ss_dssp HTT-S-HHHHHHHHH
T ss_pred HhhCchHHHHHHHHH
Confidence 766646666555443
No 232
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.76 E-value=5.2 Score=41.77 Aligned_cols=175 Identities=15% Similarity=0.189 Sum_probs=110.3
Q ss_pred HHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC--HHHHHHHHHcCChHHHHHHHhcCCh-
Q 011328 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN--VNQIQAIIEAGIIGPLVNLLLNAEF- 341 (488)
Q Consensus 265 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~~~~l~~L~~ll~~~~~- 341 (488)
++++++..++...+.+++.+++..+...++.-....++..+...+.|++... .+......... ...+..++...+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~-~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFID-FSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHH-HHHHHHHHhhcchh
Confidence 8889999999999999999999999999986557789999999999999732 12111111111 1223333333333
Q ss_pred hHHHHHHHHHHHhccCCCH-------H-HHHHHHH--------------CCChHH-HHhhcCC-CCHHHHHHHHHHHHHH
Q 011328 342 EIKKEAAWAISNATSGGSN-------E-QIKFLVS--------------QGCIKP-LCDLLNC-PDPRIVTVCLEGLENI 397 (488)
Q Consensus 342 ~v~~~a~~aL~~l~~~~~~-------~-~~~~l~~--------------~~~i~~-L~~ll~~-~~~~v~~~al~~L~~l 397 (488)
+.-..|+..|+.+...++. + ....+.+ ...+.. +.+++.. ..+..+..|++++.++
T Consensus 573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~ 652 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV 652 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence 6777788888888775321 0 0111110 111222 4344442 3345667788888888
Q ss_pred HHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc-CCCHHHHHHHHHHHHHhc
Q 011328 398 LKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS-HDNTEIYEKAVKILETYW 452 (488)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~-~~~~~v~~~a~~~l~~~~ 452 (488)
+....+ +.....+.|++..+.++.. +...+++..+..++....
T Consensus 653 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 696 (699)
T KOG3665|consen 653 LEQNKE------------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE 696 (699)
T ss_pred HHcChh------------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence 766553 4677788888888888742 235667777777766543
No 233
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.74 E-value=1.7 Score=41.66 Aligned_cols=197 Identities=16% Similarity=0.221 Sum_probs=119.5
Q ss_pred HHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCCh
Q 011328 135 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD 214 (488)
Q Consensus 135 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 214 (488)
.|+++|-.+....+..-..+.+.+++..++..+...-+..... .-...-....+....... +. ...+.-...
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~---~~~~~~~~~~~~~~~~~~---~~--~~~i~~~r~ 74 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE---NKNEEAGSGIPPEYKESS---VD--GYSISYQRQ 74 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc---ccccCCCCCCCCCccccc---cc--ccccCHHHH
Confidence 4666777777666556677788999999999983221111110 000000011010000000 00 000000112
Q ss_pred hHHHHHHHHHHHhcc---CCchhHHHHHH-hCCHHHHHHhcCCC---CcchHhHHHHHHhHhhcCCchhhHHHhhCCChH
Q 011328 215 EVLTDACWALSYLSD---GTNDKIQAVIE-AGVCPRLVELLRHP---SPSVLIPALRTVGNIVTGDDMQTQCIINHQALP 287 (488)
Q Consensus 215 ~v~~~al~~L~~l~~---~~~~~~~~~~~-~~~l~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 287 (488)
......++++..+.. ......+.+++ ..++..|..++.+. .+.+-..|+.++..+....|.....+.+.|+.+
T Consensus 75 ~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~ 154 (379)
T PF06025_consen 75 QLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLID 154 (379)
T ss_pred HHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChH
Confidence 333344444444444 33345555666 56677777777774 367888999999999998898888889999999
Q ss_pred HHHHHhc-cc--chhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC
Q 011328 288 CLLDLLT-QN--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE 340 (488)
Q Consensus 288 ~L~~lL~-~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~ 340 (488)
.+++.+. .. .+.++-...-.+++.+|-+ ....+.+.+.+.++.+++++.+++
T Consensus 155 ~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN-~~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 155 AFLDAITAKGILPSSEVLTSLPNVLSAICLN-NRGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHhHHhcC-HHHHHHHHhcChHHHHHHHhCCHH
Confidence 9999887 32 2455555556667777665 667788888899999999988764
No 234
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.49 E-value=0.94 Score=45.50 Aligned_cols=232 Identities=14% Similarity=0.073 Sum_probs=137.1
Q ss_pred HhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC---CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC-
Q 011328 155 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK---PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG- 230 (488)
Q Consensus 155 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~- 230 (488)
++.+.++.++..-..-+...+....-..|+.+.... .....+...-.-|.+.+-|+-.|..|+..|+..+.+.-.-
T Consensus 126 iE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~ 205 (1005)
T KOG1949|consen 126 IENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR 205 (1005)
T ss_pred HhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC
Confidence 355667766665433333334444444555555433 1111222233445666777888999999999999987732
Q ss_pred -Cc---hhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhC----CChHHHHHHhcccchhhHH
Q 011328 231 -TN---DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH----QALPCLLDLLTQNYKKSIK 302 (488)
Q Consensus 231 -~~---~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----~~~~~L~~lL~~~~~~~v~ 302 (488)
++ +.++.+++ +-...+.++|.++-+.+|..|..-+..+.+..- .++.. .++..+.+-+......+||
T Consensus 206 dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fW----e~iP~~i~~~ll~kI~d~~a~dt~s~VR 280 (1005)
T KOG1949|consen 206 DPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKFW----EMIPPTILIDLLKKITDELAFDTSSDVR 280 (1005)
T ss_pred CCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH----HHcCHHHHHHHHHHHHHHhhhccchhee
Confidence 21 22333444 345778999999999999998877766654221 22222 2333444434333356888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC
Q 011328 303 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP 382 (488)
Q Consensus 303 ~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~ 382 (488)
......|..+... +. .-.+++ .++|.+-..+.++...||..+...|..+-... ...+..---.+.++.-|+.+
T Consensus 281 ~svf~gl~~~l~n-p~-sh~~le-~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vr----a~~f~~I~~~d~~l~~L~~d 353 (1005)
T KOG1949|consen 281 CSVFKGLPMILDN-PL-SHPLLE-QLLPALRYSLHDNSEKVRVAFVDMLLKIKAVR----AAKFWKICPMDHILVRLETD 353 (1005)
T ss_pred hhHhcCcHHHHcC-cc-chhHHH-HHHHhcchhhhccchhHHHHHHHHHHHHHhhh----hhhhhccccHHHHHHHHhcc
Confidence 8888888877764 22 112233 25677777888888999999998888874322 12222223456666666766
Q ss_pred CHHHHHHHHHHHHHHH
Q 011328 383 DPRIVTVCLEGLENIL 398 (488)
Q Consensus 383 ~~~v~~~al~~L~~l~ 398 (488)
+.++....+..+.+.+
T Consensus 354 ~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 354 SRPVSRRLVSLIFNSF 369 (1005)
T ss_pred ccHHHHHHHHHHHHhh
Confidence 6666555555554443
No 235
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.39 E-value=5.2 Score=38.62 Aligned_cols=131 Identities=11% Similarity=0.078 Sum_probs=93.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCCCcc--HHHHHHcCCHHHHHHhhcCCC----Ch--hHHHHHHHHHHHhcCC
Q 011328 33 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP--INEVIQSGVVPRFIEFLSRDD----FP--QLQFEAAWALTNIASG 104 (488)
Q Consensus 33 ~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~~i~~L~~lL~~~~----~~--~v~~~a~~~L~~l~~~ 104 (488)
..+..+++.++.+.|+.|+-...++..+.+-.. .+.+.+.-+++.+-+++.+.+ .+ -.+.-++.+|+..|.
T Consensus 14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~- 92 (698)
T KOG2611|consen 14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR- 92 (698)
T ss_pred hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC-
Confidence 346677777888889999999999887653332 344667778888888886543 22 345566777888887
Q ss_pred Cchhh--HHHHhCCCHHHHHHhhCC-CCH------HHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHh
Q 011328 105 TSENT--RVVIDHGAVPIFVRLLSS-PTD------DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF 167 (488)
Q Consensus 105 ~~~~~--~~~~~~g~i~~L~~~L~~-~~~------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll 167 (488)
.|+.. ..++ +-||.|..+++. .++ .+.+.+..+|..++...+. ...++..|+++.+.+.-
T Consensus 93 ~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y 161 (698)
T KOG2611|consen 93 VPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMY 161 (698)
T ss_pred ChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHH
Confidence 55543 3344 458999998875 333 3788899999999988665 45666779998888665
No 236
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.04 E-value=3.2 Score=45.85 Aligned_cols=148 Identities=16% Similarity=0.175 Sum_probs=91.6
Q ss_pred CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHH
Q 011328 242 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ 321 (488)
Q Consensus 242 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 321 (488)
+++|.|..-|.+++..+|..|...++.+......+.. --........+.-+.+. +..+|.+++....++...++....
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence 7888888889999999999999999999875443322 00123455566666677 888999999999888776555333
Q ss_pred HHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011328 322 AIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 322 ~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~ 400 (488)
... ....+.. .+.|++++.....++.... -......+... .+..+.+.+.+....||..|+..|..+...
T Consensus 337 ~~~---~~~~l~~--~~~D~~~rir~~v~i~~~~---v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 337 AST---ILLALRE--RDLDEDVRVRTQVVIVACD---VMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHH---HHHHHHh--hcCChhhhheeeEEEEEee---hhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 221 1222221 2234444433222221111 11222233333 566666677788899999999988888763
No 237
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=94.00 E-value=5.6 Score=37.53 Aligned_cols=157 Identities=18% Similarity=0.164 Sum_probs=112.1
Q ss_pred HHHHHHhcCCCCcchHhHHHHHHhHhhc-CCchhhHHHhhC-C-ChHHHHHHhcccc----h--------hhHHHHHHHH
Q 011328 244 CPRLVELLRHPSPSVLIPALRTVGNIVT-GDDMQTQCIINH-Q-ALPCLLDLLTQNY----K--------KSIKKEACWT 308 (488)
Q Consensus 244 l~~L~~lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~-~-~~~~L~~lL~~~~----~--------~~v~~~a~~~ 308 (488)
+..+...|....+.+...++..|..++. ......+.+... + -.+.+.+++.... . +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7788888988888888999999999998 554566666532 1 2234455552220 1 2788888877
Q ss_pred HHHHhc-CCHHHHHHHHH-cCChHHHHHHHhcCChhHHHHHHHHHHH-hccCC--CHHHHHHHHHCCChHHHHhhcCCCC
Q 011328 309 ISNITA-GNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISN-ATSGG--SNEQIKFLVSQGCIKPLCDLLNCPD 383 (488)
Q Consensus 309 L~nl~~-~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~a~~aL~~-l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~ 383 (488)
+..+.. +++..+..+++ .+.+..+.+-+..+++++....+.+|.. +.... .+.....+.....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 666665 66777777665 5678888888888888999999999985 44322 2344455566678899999888877
Q ss_pred H----HHHHHHHHHHHHHHHh
Q 011328 384 P----RIVTVCLEGLENILKA 400 (488)
Q Consensus 384 ~----~v~~~al~~L~~l~~~ 400 (488)
+ .+.+.+-+.|..++..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred CcccchHHHHHHHHHHHHhcC
Confidence 7 8888888888888753
No 238
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.00 E-value=8 Score=39.34 Aligned_cols=205 Identities=17% Similarity=0.198 Sum_probs=122.7
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
+.+..+++...+.+..+|.+++..|..+.. + ...++..+-.+....+..-+.+.. +.||.+|+.+|..+-.+..+-
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~-~~eidd~vfn~l~e~l~~Rl~Dre-p~VRiqAv~aLsrlQ~d~~de- 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSD-E-NAEIDDDVFNKLNEKLLIRLKDRE-PNVRIQAVLALSRLQGDPKDE- 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhc-c-ccccCHHHHHHHHHHHHHHHhccC-chHHHHHHHHHHHHhcCCCCC-
Confidence 567778888889999999999999999764 3 344555555667777777778888 899999999999998522111
Q ss_pred HHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHH-HHHHHhh
Q 011328 110 RVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT-WTLSNFC 187 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~-~~L~~l~ 187 (488)
+..+...+..++++ +++++|..|+. +++-++. ..+.++... ++-+...++-+- .++-.+
T Consensus 161 ----e~~v~n~l~~liqnDpS~EVRRaaLs---nI~vdns----------Tlp~IveRa-rDV~~anRrlvY~r~lpki- 221 (892)
T KOG2025|consen 161 ----ECPVVNLLKDLIQNDPSDEVRRAALS---NISVDNS----------TLPCIVERA-RDVSGANRRLVYERCLPKI- 221 (892)
T ss_pred ----cccHHHHHHHHHhcCCcHHHHHHHHH---hhccCcc----------cchhHHHHh-hhhhHHHHHHHHHHhhhhh-
Confidence 22456778888876 88999998655 4443322 234444444 333333333222 112111
Q ss_pred cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHHH
Q 011328 188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTV 266 (488)
Q Consensus 188 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L 266 (488)
..........+..+-..+.+.+..++..+...|..=. .. ..+ |=+.-++.-++- .+.+++..++.++
T Consensus 222 ----d~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~W------l~-~~d-gni~ElL~~ldvsnss~vavk~leal 289 (892)
T KOG2025|consen 222 ----DLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGW------LR-FSD-GNILELLERLDVSNSSEVAVKALEAL 289 (892)
T ss_pred ----hhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH------hh-hcc-ccHHHHHHHhccccchHHHHHHHHHH
Confidence 1112222333444445555666777777766665411 11 112 333344444543 4457888888887
Q ss_pred hHh
Q 011328 267 GNI 269 (488)
Q Consensus 267 ~~l 269 (488)
-..
T Consensus 290 f~~ 292 (892)
T KOG2025|consen 290 FSG 292 (892)
T ss_pred HHH
Confidence 664
No 239
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=93.93 E-value=4.4 Score=38.73 Aligned_cols=147 Identities=14% Similarity=0.086 Sum_probs=90.7
Q ss_pred HHHhCCHHHHHHhcCC-CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhc----c-cchhhHHHHHHHHHHH
Q 011328 238 VIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT----Q-NYKKSIKKEACWTISN 311 (488)
Q Consensus 238 ~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~----~-~~~~~v~~~a~~~L~n 311 (488)
+.+.+-.+.+-.-+.. ....-|.+|+..+..++...+.....++ ...+..++. + ..+++-|..|+..++.
T Consensus 206 lfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~a 281 (370)
T PF08506_consen 206 LFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGA 281 (370)
T ss_dssp HHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHH
T ss_pred HHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHH
Confidence 5555666666665654 3356778899999999875444333222 233444443 1 2266788899999999
Q ss_pred HhcCCHH------------HHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhc
Q 011328 312 ITAGNVN------------QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL 379 (488)
Q Consensus 312 l~~~~~~------------~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll 379 (488)
++..... ....++...++|.|. --.+..+-++-.|++.+..+-..-+++.... +++.+++.|
T Consensus 282 la~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~-----~~~~l~~~L 355 (370)
T PF08506_consen 282 LASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQ-----IFPLLVNHL 355 (370)
T ss_dssp HHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHH-----HHHHHHHHT
T ss_pred HHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHh
Confidence 9874211 344555666777765 1123366788899999999977665544333 799999999
Q ss_pred CCCCHHHHHHHHHHH
Q 011328 380 NCPDPRIVTVCLEGL 394 (488)
Q Consensus 380 ~~~~~~v~~~al~~L 394 (488)
.+++.-+...|..++
T Consensus 356 ~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 356 QSSSYVVHTYAAIAI 370 (370)
T ss_dssp TSS-HHHHHHHHHHH
T ss_pred CCCCcchhhhhhhhC
Confidence 999988887776553
No 240
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.91 E-value=1.8 Score=42.32 Aligned_cols=156 Identities=13% Similarity=0.127 Sum_probs=114.8
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc---cHhHHHHHHHHHHHhhcCCCCCC
Q 011328 118 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPL 194 (488)
Q Consensus 118 i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~---~~~v~~~a~~~L~~l~~~~~~~~ 194 (488)
...+.+.+.+++..-+..++..+..++.+.. +...++...++..|.+++.+.. ...+....+.+++.+-...-...
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~-fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPT-FAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHH-HHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 3566677778888888778889999887654 6677788888999999885433 45677777788877776654333
Q ss_pred hhhhhchHHHHHHhhc--cCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC
Q 011328 195 FEQTRPALPALERLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 272 (488)
Q Consensus 195 ~~~~~~~~~~l~~ll~--~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 272 (488)
......++..+..+.. ..+..+...|+..+-++...++...+.+.+.--+..++..+...+..++..|+..+..+...
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 3333445555555543 34677888999999999988877777788878899999999998888888888888777765
Q ss_pred Cc
Q 011328 273 DD 274 (488)
Q Consensus 273 ~~ 274 (488)
.+
T Consensus 244 a~ 245 (713)
T KOG2999|consen 244 AP 245 (713)
T ss_pred CC
Confidence 44
No 241
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.78 E-value=1.1 Score=38.29 Aligned_cols=111 Identities=10% Similarity=0.130 Sum_probs=75.4
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcC-CCchhhHHHHhCCCHHHHHHhhCC---------CCHHHHHHHHHHHhh
Q 011328 73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSS---------PTDDVREQAVWALGN 142 (488)
Q Consensus 73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~~L~~---------~~~~v~~~a~~~L~~ 142 (488)
.....+++.+.+.. ... ..+..|..-.. ........+++.|++..|+.+|.. .+......++.++..
T Consensus 66 ~~p~~~i~~L~~~~-~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clka 142 (187)
T PF06371_consen 66 SSPEWYIKKLKSRP-STS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKA 142 (187)
T ss_dssp HHHHHHHHHHTTT---HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccC-ccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHH
Confidence 34556677776655 221 22333333222 234667778888999999998853 345788899999999
Q ss_pred hhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011328 143 VAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 187 (488)
Q Consensus 143 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~ 187 (488)
+.....+....+...+.+..++..+ .+.+..++..++..|..+|
T Consensus 143 l~n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 143 LMNTKYGLEAVLSHPDSVNLIALSL-DSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HTSSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHcCcHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 9877766555666677888888888 7788999999999998876
No 242
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.77 E-value=5 Score=40.80 Aligned_cols=175 Identities=13% Similarity=0.105 Sum_probs=106.4
Q ss_pred hhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch
Q 011328 197 QTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 275 (488)
Q Consensus 197 ~~~~~~~~l~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 275 (488)
.....+|.|...++.. ...+..-.+.-+.-|.+.-+ ..-+...+++.|...+++.+..++..++..+..++..-+
T Consensus 346 ~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~---~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD- 421 (700)
T KOG2137|consen 346 FGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTP---PEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID- 421 (700)
T ss_pred hhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCC---hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc-
Confidence 3455667777777642 22222222222222222111 113334788889999999999999999999999887544
Q ss_pred hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011328 276 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 355 (488)
Q Consensus 276 ~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~ 355 (488)
-..++..+++.+..+.....+..++..++.++..++.. .+...-...+..+.+..+..++.+......+..++.
T Consensus 422 --~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~----lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 422 --VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR----LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred --HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 23445567888877654444888999999999988732 111111124556666777778888887777777776
Q ss_pred cCCCHHHHHHHHHCCChHHHHhhcCCCC
Q 011328 356 SGGSNEQIKFLVSQGCIKPLCDLLNCPD 383 (488)
Q Consensus 356 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 383 (488)
..... . ..+....+++.++-+...+.
T Consensus 496 ~~~~~-g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 496 LIIYS-G-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred hhccc-c-eeeehhhhhhhhhhhhhccc
Confidence 53321 1 22333466777777666544
No 243
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=93.75 E-value=4.1 Score=39.87 Aligned_cols=276 Identities=10% Similarity=0.086 Sum_probs=127.9
Q ss_pred CHHHHHHhhcC---CCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCch
Q 011328 74 VVPRFIEFLSR---DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPK 149 (488)
Q Consensus 74 ~i~~L~~lL~~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~ 149 (488)
++..|+.++.. ..++.+-....+++..+-..-......+++. .+..+....++ .+|..-.....+++.+.+....
T Consensus 27 ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~ 105 (435)
T PF03378_consen 27 LLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCE 105 (435)
T ss_dssp HHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-G
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccC
Confidence 44555555544 2335555555666655555434444444332 34444445555 5677777777777777543221
Q ss_pred hHH---HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCC-CCChhhhhchHHHHHHhhccCChhHHHHHHHHHH
Q 011328 150 CRD---LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALS 225 (488)
Q Consensus 150 ~~~---~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~ 225 (488)
... .-.+...++.+...| +.+-.+..-++...++.+.+..+ ..........++.++.-.--....-.-...+.|.
T Consensus 106 ~~~~~v~~~E~~L~P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~ 184 (435)
T PF03378_consen 106 ADPEAVSQFEEALFPPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQ 184 (435)
T ss_dssp GGHH---HHHHHHHHHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHH
Confidence 111 123444566677777 44444566677777777766543 1111222333443332211111111223333444
Q ss_pred HhccCCchhHHHHHHh----CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh-hHHHhhCCChHHHHHHhcccchhh
Q 011328 226 YLSDGTNDKIQAVIEA----GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-TQCIINHQALPCLLDLLTQNYKKS 300 (488)
Q Consensus 226 ~l~~~~~~~~~~~~~~----~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~~L~~lL~~~~~~~ 300 (488)
......+... ... +++..+-+++.+... -..+...|..+...-+.. ....+. .++..++.-|++....+
T Consensus 185 a~i~k~~~~i---~~~~~l~~iLgvFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~k 258 (435)
T PF03378_consen 185 AYIKKDPSFI---VANNQLEPILGVFQKLIASKAN--DHYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTEK 258 (435)
T ss_dssp HHHHHHGGG-------S-CHHHHHHHHHHHT-TTC--HHHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--HH
T ss_pred HHHHhCchhh---cchhhHHHHHHHHHHHHCCCCc--chHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcHH
Confidence 3333322221 111 233444455555432 245677777777655532 222222 45666666666554666
Q ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHH---cCChHHHHHHH--h---c-CChhHHHHHHHHHHHhccC
Q 011328 301 IKKEACWTISNITA-GNVNQIQAIIE---AGIIGPLVNLL--L---N-AEFEIKKEAAWAISNATSG 357 (488)
Q Consensus 301 v~~~a~~~L~nl~~-~~~~~~~~l~~---~~~l~~L~~ll--~---~-~~~~v~~~a~~aL~~l~~~ 357 (488)
.++..+..++.++. .+++..-..++ .|++..++.-+ . . ....-|+.++-++.++...
T Consensus 259 f~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~e 325 (435)
T PF03378_consen 259 FVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCE 325 (435)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhc
Confidence 66666666666654 34554444443 44444444421 1 1 1233466677777776643
No 244
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.73 E-value=9.8 Score=39.43 Aligned_cols=306 Identities=13% Similarity=0.078 Sum_probs=140.0
Q ss_pred HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHH-hhCC--CCHHHHHHHHHHHhhhhCC
Q 011328 70 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSS--PTDDVREQAVWALGNVAGD 146 (488)
Q Consensus 70 ~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-~L~~--~~~~v~~~a~~~L~~l~~~ 146 (488)
.+.+.+..+.+-|+.+|...-|..|+..+..++...+.....++.. .+..++. +..+ .+..-++.+...+..++..
T Consensus 358 FED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~-~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik 436 (960)
T KOG1992|consen 358 FEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSS-EVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIK 436 (960)
T ss_pred hccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHhccCCCccccccchhhhhhHHHHhh
Confidence 3444555555666655533345666777777877443333333322 2333333 3333 4555666666666666643
Q ss_pred CchhHHHHHhcC----ChH----HHHHHhcc---cccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChh
Q 011328 147 SPKCRDLVLSNG----ALM----PLLAQFNE---HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDE 215 (488)
Q Consensus 147 ~~~~~~~~~~~~----~l~----~L~~ll~~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 215 (488)
....+.-+...+ .+. .++..|.. ...+-++..++ ..+...............+|.++..+..+..-
T Consensus 437 ~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aI---Ky~~~FR~ql~~~~lm~~~p~li~~L~a~s~v 513 (960)
T KOG1992|consen 437 GQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAI---KYIYTFRNQLGKEHLMALLPRLIRFLEAESRV 513 (960)
T ss_pred cchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhccc---ceeeeecccCChHHHHHHHHHHHHhccCcchH
Confidence 221111111111 111 11111211 11222222222 22222222334455577899999999999999
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHHh-CC-------HHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhh---CC
Q 011328 216 VLTDACWALSYLSDGTNDKIQAVIEA-GV-------CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN---HQ 284 (488)
Q Consensus 216 v~~~al~~L~~l~~~~~~~~~~~~~~-~~-------l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~---~~ 284 (488)
+-.+|+.++-.+....++.-..+... .+ +..|++.++.+...--+...+++..+..-.+........ .+
T Consensus 514 vhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~ 593 (960)
T KOG1992|consen 514 VHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQ 593 (960)
T ss_pred HHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHH
Confidence 99999999987764333211112211 22 222333333332222233344444433323322211111 12
Q ss_pred ChHHHHHHhcccchhhHHHH---HHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCC-
Q 011328 285 ALPCLLDLLTQNYKKSIKKE---ACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS- 359 (488)
Q Consensus 285 ~~~~L~~lL~~~~~~~v~~~---a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~- 359 (488)
..+.+...-+++.++..-.. +..++-+... .++.....+ +...+|.+...+..+-.+.--.+...++.+.....
T Consensus 594 Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~-e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~ 672 (960)
T KOG1992|consen 594 LTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSL-EEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSG 672 (960)
T ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 22333333345544443333 3333333333 334433333 34577777777777655555566666666554321
Q ss_pred --HHHHHHHH----------HCCChHHHHhhcC
Q 011328 360 --NEQIKFLV----------SQGCIKPLCDLLN 380 (488)
Q Consensus 360 --~~~~~~l~----------~~~~i~~L~~ll~ 380 (488)
++....+. ..|-++.+++++.
T Consensus 673 ~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~ 705 (960)
T KOG1992|consen 673 TIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQ 705 (960)
T ss_pred CCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHH
Confidence 22222221 3577777777765
No 245
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.59 E-value=0.31 Score=35.90 Aligned_cols=85 Identities=15% Similarity=0.234 Sum_probs=64.6
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
..+...+..|.++.+.+|-.++..|++++...+ ....-...++..+...|++++ +-+-..|+.++..++...++
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~-- 76 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPD-- 76 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChH--
Confidence 345678889999999999999999999998753 122223567888899999999 89999999999999984443
Q ss_pred HHHHhCCCHHHHHHhhC
Q 011328 110 RVVIDHGAVPIFVRLLS 126 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~ 126 (488)
.+++.|++...
T Consensus 77 ------~vl~~L~~~y~ 87 (92)
T PF10363_consen 77 ------EVLPILLDEYA 87 (92)
T ss_pred ------HHHHHHHHHHh
Confidence 23555555443
No 246
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=93.51 E-value=1.3 Score=37.26 Aligned_cols=141 Identities=15% Similarity=0.154 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhccCCchh-HH----HHH------Hh-CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhC
Q 011328 216 VLTDACWALSYLSDGTNDK-IQ----AVI------EA-GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH 283 (488)
Q Consensus 216 v~~~al~~L~~l~~~~~~~-~~----~~~------~~-~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 283 (488)
+|..|+.+|..++...+.+ .- .++ .. .-...+.-++.++++.+|..|+.++..+..+........-+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 5677777777777652211 11 011 01 122334445677899999999999999988654332222211
Q ss_pred -------------------CChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHH--HHHHcCChHHHHHHHhcCChh
Q 011328 284 -------------------QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ--AIIEAGIIGPLVNLLLNAEFE 342 (488)
Q Consensus 284 -------------------~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~--~l~~~~~l~~L~~ll~~~~~~ 342 (488)
.+...|+..|+.+.+..+....+.++..+....|-.+- .++ ..++..+..++.+.|.+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll-~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLL-TEVVTQVRPLLRHRDPN 160 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHH-HHHHHHHHHHHhcCCCc
Confidence 13455666667666778888999999999885443321 121 12556666677788999
Q ss_pred HHHHHHHHHHHhccC
Q 011328 343 IKKEAAWAISNATSG 357 (488)
Q Consensus 343 v~~~a~~aL~~l~~~ 357 (488)
++..++.+++.+...
T Consensus 161 v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 161 VRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999988764
No 247
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=93.48 E-value=0.75 Score=39.19 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=78.8
Q ss_pred cCChhHHHHHHHHHHHhccCCchhHHHHHH----------------hCCHHHHHHhcCC------CCcchHhHHHHHHhH
Q 011328 211 SNDDEVLTDACWALSYLSDGTNDKIQAVIE----------------AGVCPRLVELLRH------PSPSVLIPALRTVGN 268 (488)
Q Consensus 211 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~----------------~~~l~~L~~lL~~------~~~~v~~~a~~~L~~ 268 (488)
+++......++..|+|++....... .+++ ...+..|+..+.. +...-......++.|
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~-~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCE-KLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHH-HHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 3445556667777777776544332 1221 1345666666544 234455677889999
Q ss_pred hhcCCchhhHHHhhC--CC--hHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH---cCChHHHHHHHhcC
Q 011328 269 IVTGDDMQTQCIINH--QA--LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AGIIGPLVNLLLNA 339 (488)
Q Consensus 269 l~~~~~~~~~~~~~~--~~--~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~l~~L~~ll~~~ 339 (488)
++. .+..++.+++. +. +..|+....+. +..-|..++.+|.|++.....+ ..++. .+++|.|+--+..+
T Consensus 85 lS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLaGp 159 (192)
T PF04063_consen 85 LSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLAGP 159 (192)
T ss_pred hcC-CHHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhccCC
Confidence 988 45566666643 33 77888888888 7777888999999999864443 33332 35666666655543
No 248
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=93.37 E-value=0.82 Score=37.84 Aligned_cols=35 Identities=26% Similarity=0.327 Sum_probs=28.5
Q ss_pred CChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHH
Q 011328 284 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 318 (488)
Q Consensus 284 ~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 318 (488)
..++.|+.+|+++.+..+|.+++++++.+..-+|.
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~ 44 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPY 44 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcH
Confidence 46778888998887899999999999999874343
No 249
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.27 E-value=0.55 Score=40.11 Aligned_cols=147 Identities=10% Similarity=0.185 Sum_probs=91.0
Q ss_pred CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCC----CChhHHHHHHHHHHHhcC-CCchhhHHHHhCC
Q 011328 42 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD----DFPQLQFEAAWALTNIAS-GTSENTRVVIDHG 116 (488)
Q Consensus 42 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~----~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g 116 (488)
+...-|...+-.+.+++.++ ++....+++..+--.+...|... ..+.+|..++.+++.+.. ++++....+....
T Consensus 111 ~~~snRvcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTe 189 (315)
T COG5209 111 ERESNRVCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTE 189 (315)
T ss_pred chhhhHHHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhh
Confidence 33444554444444444444 56555566655443444444322 225689999999999998 4456677788889
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhc-------CChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328 117 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN-------GALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 117 ~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-------~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
++|.+++.++.+++--+..|+.++..+..++...+...... ..+..++..+-......+...++.+-..++..
T Consensus 190 ivPLcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~ 269 (315)
T COG5209 190 IVPLCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK 269 (315)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence 99999999999999999999999999887776543332211 12222333332334445556666666555554
No 250
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=92.79 E-value=6.7 Score=34.86 Aligned_cols=138 Identities=16% Similarity=0.090 Sum_probs=89.7
Q ss_pred HHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHH
Q 011328 161 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE 240 (488)
Q Consensus 161 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~ 240 (488)
+.++..+.+..++..+...+.+|..++..+ . .....++..+..+...++.....-+.+.+..+...++...
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~---~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f----- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHK---N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF----- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccC---c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-----
Confidence 445554667788999999999999999875 1 3345566777777777777766667777777776554222
Q ss_pred hCCHHHHHHh-----c---CC--CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHh-cccchhhHHHHHHHHH
Q 011328 241 AGVCPRLVEL-----L---RH--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL-TQNYKKSIKKEACWTI 309 (488)
Q Consensus 241 ~~~l~~L~~l-----L---~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~~v~~~a~~~L 309 (488)
+.+..++.. . .+ ...+.......++..++...+.... .+++.+..++ ++. ++.++..++.++
T Consensus 74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~-----~ll~~ls~~L~~~~-~~~~~alale~l 146 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV-----DLLPLLSGCLNQSC-DEVAQALALEAL 146 (234)
T ss_pred -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH-----HHHHHHHHHHhccc-cHHHHHHHHHHH
Confidence 223322222 1 11 1233444445677777776665222 4677788888 666 788888899899
Q ss_pred HHHhc
Q 011328 310 SNITA 314 (488)
Q Consensus 310 ~nl~~ 314 (488)
..++.
T Consensus 147 ~~Lc~ 151 (234)
T PF12530_consen 147 APLCE 151 (234)
T ss_pred HHHHH
Confidence 98884
No 251
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=92.72 E-value=8.4 Score=37.78 Aligned_cols=263 Identities=11% Similarity=0.079 Sum_probs=122.9
Q ss_pred CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC----CCCChhhhhchHH
Q 011328 128 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK----PQPLFEQTRPALP 203 (488)
Q Consensus 128 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~----~~~~~~~~~~~~~ 203 (488)
+++.+-...++++..+-..-......+.. ..+..+....++.+++..-.....+++.+.+.. +.........++|
T Consensus 42 ENeylMk~iMRvl~~~~e~~~p~~~~il~-~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P 120 (435)
T PF03378_consen 42 ENEYLMKCIMRVLSVLQEDILPIAVEILQ-HLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP 120 (435)
T ss_dssp C-HHHHHHHHHHHHHSTTTTGGGHHHHHH-HHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence 56667777777776665544333333332 122223233333446665556556666554432 3333356678889
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcc---hHhHHHHHHhHhhcCCchhhHHH
Q 011328 204 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS---VLIPALRTVGNIVTGDDMQTQCI 280 (488)
Q Consensus 204 ~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~---v~~~a~~~L~~l~~~~~~~~~~~ 280 (488)
.+...|+.+-.+..-++...++.+.+..+. ..+- ......+-.++...-++ -.-...+.|..+....+...
T Consensus 121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~--~~~p-~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i--- 194 (435)
T PF03378_consen 121 PFQEILQQDVQEFIPYVFQILAQLLELRPS--SPLP-DAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFI--- 194 (435)
T ss_dssp HHHHHHHTT-TTTHHHHHHHHHHHHHHSS----S---TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCCc-HHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhh---
Confidence 999999988778888888888888755430 1011 11122222222221111 12233445555444333222
Q ss_pred hhC----CChHHHHHHhcccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHh
Q 011328 281 INH----QALPCLLDLLTQNYKKSIKKEACWTISNITAGN-VNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNA 354 (488)
Q Consensus 281 ~~~----~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l 354 (488)
... +++..+-+++.++.++ ..+...|..+...- .+..+..+. .++..++.-|++. .++.++.-+..++.+
T Consensus 195 ~~~~~l~~iLgvFQkLi~sk~~D---~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~kf~~~fv~F~~~~ 270 (435)
T PF03378_consen 195 VANNQLEPILGVFQKLIASKAND---HYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTEKFVKRFVVFLSLF 270 (435)
T ss_dssp ---S-CHHHHHHHHHHHT-TTCH---HHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHCCCCcc---hHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcHHHHHHHHHHHHHH
Confidence 222 3444455566665222 45667777776632 333333333 3566666666644 555555666666655
Q ss_pred ccCCCHHHHHHHHH---CCChHHHHhhc------CCCCHHHHHHHHHHHHHHHHhh
Q 011328 355 TSGGSNEQIKFLVS---QGCIKPLCDLL------NCPDPRIVTVCLEGLENILKAG 401 (488)
Q Consensus 355 ~~~~~~~~~~~l~~---~~~i~~L~~ll------~~~~~~v~~~al~~L~~l~~~~ 401 (488)
+...+++..-..++ .|....+..-+ +-..+.-++.+.-++.+++...
T Consensus 271 ~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es 326 (435)
T PF03378_consen 271 AIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCES 326 (435)
T ss_dssp HHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSS
T ss_pred HHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhcc
Confidence 54434444433333 23333333311 1122333555555666665443
No 252
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=92.66 E-value=4.9 Score=34.28 Aligned_cols=147 Identities=18% Similarity=0.170 Sum_probs=92.8
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
.-++.+++...+++..++..|+..+..++...=-.+ ...+|.++.+..+++ +.++..|...+..+....+...
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP------~~cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVNP------KQCVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh------HHHHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHH
Confidence 346788998899999999999999999887541111 137899999999988 9999999999999988555544
Q ss_pred HHHHhCCCHHHHHHhhC---CCCH-HH---HHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc-------cHhH
Q 011328 110 RVVIDHGAVPIFVRLLS---SPTD-DV---REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-------KLSM 175 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~---~~~~-~v---~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-------~~~v 175 (488)
..-...| +..-..+-. .+.. .. ....+..+..+...+...|..+ +..+++.+..+. ...-
T Consensus 81 ~~~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~ 154 (187)
T PF12830_consen 81 ESRYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSD 154 (187)
T ss_pred HHHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhH
Confidence 4333333 333333222 1111 11 4555666677776555555554 456666663221 2333
Q ss_pred HHHHHHHHHHhhcC
Q 011328 176 LRNATWTLSNFCRG 189 (488)
Q Consensus 176 ~~~a~~~L~~l~~~ 189 (488)
.....++..||+.-
T Consensus 155 l~~~~Fla~nLA~l 168 (187)
T PF12830_consen 155 LDFLLFLAENLATL 168 (187)
T ss_pred HHHHHHHHHHHhcC
Confidence 44555555565544
No 253
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.62 E-value=0.79 Score=38.20 Aligned_cols=115 Identities=19% Similarity=0.148 Sum_probs=79.3
Q ss_pred CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc---CCHH
Q 011328 242 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA---GNVN 318 (488)
Q Consensus 242 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~ 318 (488)
.....+..+|+++++.-|..++..+...+..++...-.---...+..++.+|+.++...+++.++.++..+.. +.++
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4567788899998899999999999888876532111111235788899999888678889999999988875 4455
Q ss_pred HHHHHHHc---CChHHHHHHHhcCChhHHHHHHHHHHHhccCC
Q 011328 319 QIQAIIEA---GIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 358 (488)
Q Consensus 319 ~~~~l~~~---~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 358 (488)
..+.+... ++++.++.+++. ......++.+|..+....
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ 145 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH 145 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC
Confidence 55555432 345555555554 466677888888877543
No 254
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=92.54 E-value=1.2 Score=38.06 Aligned_cols=98 Identities=15% Similarity=0.078 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-----ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhh
Q 011328 304 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-----EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL 378 (488)
Q Consensus 304 ~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~l 378 (488)
.|+..+..++++ ++....+++..+--.+...+... ...+|..++.+++.+..++++....++....+++.+.++
T Consensus 119 naL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI 197 (315)
T COG5209 119 NALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI 197 (315)
T ss_pred HHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence 444444455544 77777777766544455555432 456889999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhh
Q 011328 379 LNCPDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 379 l~~~~~~v~~~al~~L~~l~~~~~ 402 (488)
++.+.+--+..++.++..++..+.
T Consensus 198 me~gSElSktvaifI~qkil~dDv 221 (315)
T COG5209 198 MELGSELSKTVAIFIFQKILGDDV 221 (315)
T ss_pred HHhhhHHHHHHHHHHHHHHhccch
Confidence 998887777777777777765443
No 255
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=92.54 E-value=4.1 Score=41.91 Aligned_cols=160 Identities=18% Similarity=0.218 Sum_probs=95.9
Q ss_pred CHHHHHHhhCC----CCHHHHHHHHHHHhhhhC----CCchhHHHHHhcCChHHHHHHhcc---cccHhHHHHHHHHHHH
Q 011328 117 AVPIFVRLLSS----PTDDVREQAVWALGNVAG----DSPKCRDLVLSNGALMPLLAQFNE---HAKLSMLRNATWTLSN 185 (488)
Q Consensus 117 ~i~~L~~~L~~----~~~~v~~~a~~~L~~l~~----~~~~~~~~~~~~~~l~~L~~ll~~---~~~~~v~~~a~~~L~~ 185 (488)
.+..+..++++ ..+.++..|+.+++.+.. +.+.+... .....++.+...+.. ..+...+..++.+|+|
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDF-VLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChh-hHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 35666677765 467788888888887752 22221111 112345566665532 2345556677888888
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhc-c--CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC--CCcchHh
Q 011328 186 FCRGKPQPLFEQTRPALPALERLIH-S--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLI 260 (488)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~l~~ll~-~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~ 260 (488)
+... ..++.+..++. + ....+|..|+++|..++...+...+ +.+++++.+ .++++|.
T Consensus 473 ~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e~~EvRi 534 (574)
T smart00638 473 AGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYLNRAEPPEVRM 534 (574)
T ss_pred cCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHcCCCCChHHHH
Confidence 7654 35555666665 2 2568999999999988765543322 556666654 4678888
Q ss_pred HHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHH
Q 011328 261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA 305 (488)
Q Consensus 261 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a 305 (488)
.|+..|... +|.. ..+..+...+..+.+..|+...
T Consensus 535 aA~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv 569 (574)
T smart00638 535 AAVLVLMET---KPSV-------ALLQRIAELLNKEPNLQVASFV 569 (574)
T ss_pred HHHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHHHHHh
Confidence 887766442 2322 2355667777666456665543
No 256
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=92.51 E-value=1.7 Score=37.12 Aligned_cols=105 Identities=16% Similarity=0.104 Sum_probs=71.8
Q ss_pred CCCCcchHhHHHHHHhHhhcCCchhhHHHh----------------hCCChHHHHHHhccc-----chhhHHHHHHHHHH
Q 011328 252 RHPSPSVLIPALRTVGNIVTGDDMQTQCII----------------NHQALPCLLDLLTQN-----YKKSIKKEACWTIS 310 (488)
Q Consensus 252 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~----------------~~~~~~~L~~lL~~~-----~~~~v~~~a~~~L~ 310 (488)
.+++......++..|+|++..... ...++ +...+..|++.+..+ ....--...+.++.
T Consensus 5 ~~~~~~~adl~~MLLsNlT~~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~ 83 (192)
T PF04063_consen 5 TDPKSPLADLACMLLSNLTRSDSG-CEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA 83 (192)
T ss_pred cCCCcchHHHHHHHHHHhccchHH-HHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence 345556777888888888874432 22222 123566677766541 12334567888999
Q ss_pred HHhcCCHHHHHHHHHc--CC--hHHHHHHHhcCChhHHHHHHHHHHHhccCC
Q 011328 311 NITAGNVNQIQAIIEA--GI--IGPLVNLLLNAEFEIKKEAAWAISNATSGG 358 (488)
Q Consensus 311 nl~~~~~~~~~~l~~~--~~--l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 358 (488)
|++.. ++.++.+++. +. +..|+..+.+.+..-|.-++.+|.|++...
T Consensus 84 NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~ 134 (192)
T PF04063_consen 84 NLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDT 134 (192)
T ss_pred HhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccH
Confidence 99886 7778888753 34 778888888887777788999999999754
No 257
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=92.51 E-value=10 Score=36.40 Aligned_cols=267 Identities=11% Similarity=0.027 Sum_probs=131.9
Q ss_pred CHHHHHHHHHHHhhhhCCCchhHHHHHhcC---ChHHHHHHhc-ccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHH
Q 011328 129 TDDVREQAVWALGNVAGDSPKCRDLVLSNG---ALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 204 (488)
Q Consensus 129 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~l~~L~~ll~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 204 (488)
+.++..+|+++++.+..+.. ....+.+.. .+...+..+. .+.+..+...++|+|..=--............++..
T Consensus 59 ~~~L~~qALkll~~~l~~~~-i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~ 137 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPE-IVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA 137 (372)
T ss_pred chHHHHHHHHHHHHHHccHH-HHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence 67888999999999875532 222211111 2334444442 233445566666666532111111111111222222
Q ss_pred HHHhhc-cCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch---hh---
Q 011328 205 LERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM---QT--- 277 (488)
Q Consensus 205 l~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~---~~--- 277 (488)
+..+-+ -+...+....+.++.++....+..+..-.. ..++.++..+-+....++..|..++..+...-+. ..
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~-~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~ 216 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHAD-IWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSV 216 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHH
Confidence 222222 346788899999999999877655332222 3567777777776777777766655554422111 11
Q ss_pred HHHhhC----C-----ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHH-HHHHHHHcCChHHHHHHHhcCChhHHHHH
Q 011328 278 QCIINH----Q-----ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN-QIQAIIEAGIIGPLVNLLLNAEFEIKKEA 347 (488)
Q Consensus 278 ~~~~~~----~-----~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~l~~L~~ll~~~~~~v~~~a 347 (488)
....+. + +.+.+..++.++ +...-..-+|...-+..+++. .....+ +..+...-.+.+++++.+|..|
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~d~~~k~~A 294 (372)
T PF12231_consen 217 LEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSRLDSWEHL-NEWLKVPEKCFNSSDPQVKIQA 294 (372)
T ss_pred HHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCchhhccHhH-hHHHHHHHHHhcCCCHHHHHHH
Confidence 111111 2 233355666663 222222233333322222221 111111 2245555556778899999999
Q ss_pred HHHHHHhccCC--CHHHHHHHHHCCChHHHHhhcCCC-CH----HHHHHHHHHHHHHHHh
Q 011328 348 AWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCP-DP----RIVTVCLEGLENILKA 400 (488)
Q Consensus 348 ~~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~-~~----~v~~~al~~L~~l~~~ 400 (488)
..+-..+.... +.........- +..++...++.. .. +++..++..+.+++-+
T Consensus 295 ~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~ 353 (372)
T PF12231_consen 295 FKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY 353 (372)
T ss_pred HHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence 98888876522 11111111110 233333334422 22 6777888888877744
No 258
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.45 E-value=0.55 Score=42.32 Aligned_cols=144 Identities=13% Similarity=0.189 Sum_probs=98.7
Q ss_pred HHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHH
Q 011328 244 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 323 (488)
Q Consensus 244 l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 323 (488)
+...+..|.+.++.....++..+..++...++.....+. .++-.+++-+++. ...|-+.|+.+++.+...-...+...
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888888889999999888866544443333 4566677777888 88899999999999987433333332
Q ss_pred HHcCChHHHHHHHhcC---ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011328 324 IEAGIIGPLVNLLLNA---EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 324 ~~~~~l~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~ 400 (488)
.+ ..+..++... +.-++..|-.+|..+..+..+.. ++..|...+.+.++.++..+..++.+....
T Consensus 168 ld----~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~--------~L~~L~~~~~~~n~r~r~~a~~~~~~~v~r 235 (334)
T KOG2933|consen 168 LD----DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK--------LLRKLIPILQHSNPRVRAKAALCFSRCVIR 235 (334)
T ss_pred HH----HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH--------HHHHHHHHHhhhchhhhhhhhcccccccee
Confidence 22 1222333332 45689999999999988765532 466777778888888887777666666544
Q ss_pred h
Q 011328 401 G 401 (488)
Q Consensus 401 ~ 401 (488)
.
T Consensus 236 l 236 (334)
T KOG2933|consen 236 L 236 (334)
T ss_pred c
Confidence 3
No 259
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=92.39 E-value=16 Score=38.69 Aligned_cols=127 Identities=13% Similarity=0.135 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh
Q 011328 130 DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 209 (488)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll 209 (488)
+.++..+.-+|+++|-.+....+ ..++.+++-|..++...++.+.+-+++-+|... .......+|.+...|
T Consensus 945 ~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAASL 1015 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHHh
Confidence 46788888999999865443322 357889999977888888888888887777543 223457889999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCchhHHHHHHh--CCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011328 210 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEA--GVCPRLVELLRHPSPSVLIPALRTVGNIVT 271 (488)
Q Consensus 210 ~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~--~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 271 (488)
.++++-|+..++..|.++.... +++- .++-.++..+-+.+++++..|=.+++.+..
T Consensus 1016 ~Dp~~iVRrqt~ilL~rLLq~~------~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFG------IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred cCchHHHHHHHHHHHHHHHhhh------hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHh
Confidence 9999999999999999987543 2222 222333333445567788877777777654
No 260
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.39 E-value=1.2 Score=40.19 Aligned_cols=145 Identities=17% Similarity=0.183 Sum_probs=101.5
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhH
Q 011328 199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ 278 (488)
Q Consensus 199 ~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 278 (488)
...+...+..|.+.++......+..+..++...++.....+. .++-.+++-+++....|...|+.+++.+.........
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677788889999999999999998766544444443 5667777888888889999999999999875544443
Q ss_pred HHhhCCChHHHHHHh-ccc--chhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011328 279 CIINHQALPCLLDLL-TQN--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 355 (488)
Q Consensus 279 ~~~~~~~~~~L~~lL-~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~ 355 (488)
.. ++.++..| ... .+.-++..|-.+|..+..+-... .+++.|+..+.+.++.++..++.+..+..
T Consensus 166 ~~-----ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 166 QE-----LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HH-----HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 32 23333333 221 14568888999998887742221 25777888888888888888887777665
Q ss_pred c
Q 011328 356 S 356 (488)
Q Consensus 356 ~ 356 (488)
.
T Consensus 234 ~ 234 (334)
T KOG2933|consen 234 I 234 (334)
T ss_pred e
Confidence 4
No 261
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=92.37 E-value=15 Score=42.73 Aligned_cols=266 Identities=9% Similarity=0.091 Sum_probs=146.2
Q ss_pred CCCHHHHHHHHHHHhhhhCCCc---hhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHH
Q 011328 127 SPTDDVREQAVWALGNVAGDSP---KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 203 (488)
Q Consensus 127 ~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 203 (488)
+.+..++..|+..|..++..-- +....-.....+.++...+.+..+.++++.++.++.++...... ....+.+
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----nIkSGWk 1223 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----NVKSGWK 1223 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----hhhcCcH
Confidence 3467788888888877763211 11111112345678888776777889999999999988765421 1222444
Q ss_pred HHHHhh----ccCChhHHHHHHHHHHHhccCCchhH-----HHHHHhCCHHHHHHhcCCC-CcchHhHHHHHHhHhhcCC
Q 011328 204 ALERLI----HSNDDEVLTDACWALSYLSDGTNDKI-----QAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTGD 273 (488)
Q Consensus 204 ~l~~ll----~~~~~~v~~~al~~L~~l~~~~~~~~-----~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~ 273 (488)
.+..++ ...++.+...+..++..+....-... ..+ ..++..+....... +.++-..|+..|+.++..-
T Consensus 1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076 1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence 444444 35578888888888877664311100 011 13445555554433 3566677777777552210
Q ss_pred c---------------------------hhhH-----HHhhCCChHHHHH---HhcccchhhHHHHHHHHHHHHhcC---
Q 011328 274 D---------------------------MQTQ-----CIINHQALPCLLD---LLTQNYKKSIKKEACWTISNITAG--- 315 (488)
Q Consensus 274 ~---------------------------~~~~-----~~~~~~~~~~L~~---lL~~~~~~~v~~~a~~~L~nl~~~--- 315 (488)
. .... ......+++.|.. +..++ +.+||..|+.+|-.+...
T Consensus 1302 a~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076 1302 AEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred HhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhhc
Confidence 0 0000 0001123344333 34555 899999999998877651
Q ss_pred --CHHHHHHHHHcCChHHHHHHHhcC------------------C-hh----HHHHHHHHHHHhccCCC--HHHHHHHHH
Q 011328 316 --NVNQIQAIIEAGIIGPLVNLLLNA------------------E-FE----IKKEAAWAISNATSGGS--NEQIKFLVS 368 (488)
Q Consensus 316 --~~~~~~~l~~~~~l~~L~~ll~~~------------------~-~~----v~~~a~~aL~~l~~~~~--~~~~~~l~~ 368 (488)
+++....++. +++-+++..++.. + .+ +...+..+|..++.--. -+....+..
T Consensus 1381 ~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~ 1459 (1780)
T PLN03076 1381 LFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLK 1459 (1780)
T ss_pred cCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555 4555666555421 0 00 23334444444432110 011222222
Q ss_pred CCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011328 369 QGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 401 (488)
Q Consensus 369 ~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 401 (488)
+++..|..++..++..+......+|.+++...
T Consensus 1460 -~~l~ll~~ci~q~n~~la~ig~~~l~~li~~n 1491 (1780)
T PLN03076 1460 -KVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNA 1491 (1780)
T ss_pred -HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence 56777777778888888888888888887543
No 262
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=92.35 E-value=2.3 Score=49.89 Aligned_cols=265 Identities=14% Similarity=0.178 Sum_probs=149.7
Q ss_pred hcCCCHHHHHHHHHHHHHHhccCCC--ccHHHHH--HcCCHHHHHHhh-cCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011328 39 VWSDDRNIQLDATTQFRKLLSIERS--PPINEVI--QSGVVPRFIEFL-SRDDFPQLQFEAAWALTNIASGTSENTRVVI 113 (488)
Q Consensus 39 L~s~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~--~~~~i~~L~~lL-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 113 (488)
+..++++++..+...+..++..... +...... ...++..+..+- .+++ +.++......+. ...-....
T Consensus 490 ~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~-~~i~~~v~~~l~------~~~~~~la 562 (2341)
T KOG0891|consen 490 LEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTD-PDIRIRVLSSLN------ERFDAQLA 562 (2341)
T ss_pred HhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCC-cchhhhHHhhhc------cchhhhhc
Confidence 3457888888887777776654311 0000001 112233333332 2344 666655444433 22223344
Q ss_pred hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc---ccccHhHHHHHHHHHHHhhcCC
Q 011328 114 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGK 190 (488)
Q Consensus 114 ~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~~v~~~a~~~L~~l~~~~ 190 (488)
+.+.+..+...++.+.-.++..+...+++++..+|...-..+. ...+..+. .+.-..+......-+..+....
T Consensus 563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr----~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~ 638 (2341)
T KOG0891|consen 563 QPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLR----KTLLELLTELEFSGMARTKEESAKLLCELIISS 638 (2341)
T ss_pred CchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHH----HHHHHHhchhhhcchHHhHHHHHHHhhHHHHHH
Confidence 5566666777778888899999999999998866632111111 11111111 1111111111111111111111
Q ss_pred CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHHHhHh
Q 011328 191 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNI 269 (488)
Q Consensus 191 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l 269 (488)
+.-........+..++..+.+.+..+...++.+++.++...........+ ..++.+.+.+.. .+..-+..++++++++
T Consensus 639 ~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l 717 (2341)
T KOG0891|consen 639 PVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQL 717 (2341)
T ss_pred HHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhh
Confidence 12222333455667777788888899999999999999776655554555 566666666644 4566778899999999
Q ss_pred hcCCchhhHHHh-hCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC
Q 011328 270 VTGDDMQTQCII-NHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 315 (488)
Q Consensus 270 ~~~~~~~~~~~~-~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 315 (488)
............ ...++..+...+.......+|.++...++++...
T Consensus 718 ~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~ 764 (2341)
T KOG0891|consen 718 ESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL 764 (2341)
T ss_pred hcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence 875543322222 2245666777777776778888999888877653
No 263
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=92.28 E-value=3.9 Score=41.53 Aligned_cols=171 Identities=16% Similarity=0.125 Sum_probs=106.4
Q ss_pred ccHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328 30 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 30 ~~i~~l~~~L~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
..+|.|...++ +...++.+.-+..+--+..+. -..-+.+.++|.|..-+++.+ ..+|..++..+..++..-+
T Consensus 349 ~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt----~~e~~~~~IlplL~~S~~~~~-~~iQ~~~L~~lptv~e~iD-- 421 (700)
T KOG2137|consen 349 KMLPALKPIYSASDPKQALLFILENMDLLKEKT----PPEEVKEKILPLLYRSLEDSD-VQIQELALQILPTVAESID-- 421 (700)
T ss_pred hhhHHHHHHhccCCcccchhhHHhhHHHHHhhC----ChHHHHHHHHHHHHHHhcCcc-hhhHHHHHHhhhHHHHhcc--
Confidence 44556666665 333333333333332333222 233345678899999999999 8999999999999987222
Q ss_pred hHHHHhCCCHHHHHHh-hCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011328 109 TRVVIDHGAVPIFVRL-LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 187 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~~-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~ 187 (488)
...++..++|.+-.+ +.+.+..++.+++.+++.+...- +...-...+.++.+.. +..++.+....+.+..++.
T Consensus 422 -~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l----D~~~v~d~~lpi~~~~-~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 422 -VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL----DKAAVLDELLPILKCI-KTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred -HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHH
Confidence 344555667887775 34578999999999999997221 1111112344444444 5567777777777777766
Q ss_pred cCCCCCChhhhhchHHHHHHhhccCC
Q 011328 188 RGKPQPLFEQTRPALPALERLIHSND 213 (488)
Q Consensus 188 ~~~~~~~~~~~~~~~~~l~~ll~~~~ 213 (488)
...+.........++|.++.+...+.
T Consensus 496 ~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 496 LIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred hhcccceeeehhhhhhhhhhhhhccc
Confidence 65533344555778888887766554
No 264
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=92.24 E-value=0.7 Score=37.04 Aligned_cols=73 Identities=10% Similarity=-0.001 Sum_probs=61.4
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHh
Q 011328 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~al~~L~~l~~~ 400 (488)
++..+.+-+.++++.++..|+..|-.++.++.......+...+++..|++++.. .++.|+..++..+..-...
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 566677788899999999999999999999988888888888999999999963 5678999988887765443
No 265
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=92.08 E-value=2.3 Score=38.76 Aligned_cols=157 Identities=18% Similarity=0.182 Sum_probs=97.2
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC--CHHHHHHhhCC----CCHHHHHHHHHHHhhhhCCCc
Q 011328 75 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG--AVPIFVRLLSS----PTDDVREQAVWALGNVAGDSP 148 (488)
Q Consensus 75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~~L~~----~~~~v~~~a~~~L~~l~~~~~ 148 (488)
...+.+.+.+-. ++-+.-++..+.-++. .+.....+...+ +...+..++.. ..+..+..++++++|+..+..
T Consensus 65 ~~~~~~~~~~Wp-~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~ 142 (268)
T PF08324_consen 65 LILLLKILLSWP-PESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP 142 (268)
T ss_dssp HHHHHHHHCCS--CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHhCC-CccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc
Confidence 455556665554 4567778888877777 666655554443 24445544433 578889999999999987766
Q ss_pred hhHHHHHhc-C-ChHHHHHHhcccc---cHhHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhc-c-CChhHHHH
Q 011328 149 KCRDLVLSN-G-ALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIH-S-NDDEVLTD 219 (488)
Q Consensus 149 ~~~~~~~~~-~-~l~~L~~ll~~~~---~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~l~~ll~-~-~~~~v~~~ 219 (488)
. +..+... + .+...+..+..+. +..++..++..+.|++-.. ...........+..+.+.+. . .+++....
T Consensus 143 ~-~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R 221 (268)
T PF08324_consen 143 G-RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYR 221 (268)
T ss_dssp C-HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHH
T ss_pred c-HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHH
Confidence 4 4544442 2 2333333332222 6778888888888887543 11122233446666777443 2 58999999
Q ss_pred HHHHHHHhccCCchh
Q 011328 220 ACWALSYLSDGTNDK 234 (488)
Q Consensus 220 al~~L~~l~~~~~~~ 234 (488)
++-+++++...++..
T Consensus 222 ~LvAlGtL~~~~~~~ 236 (268)
T PF08324_consen 222 LLVALGTLLSSSDSA 236 (268)
T ss_dssp HHHHHHHHHCCSHHH
T ss_pred HHHHHHHHhccChhH
Confidence 999999999666443
No 266
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=92.04 E-value=2.7 Score=32.71 Aligned_cols=95 Identities=14% Similarity=0.203 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHH-h
Q 011328 344 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAID-D 422 (488)
Q Consensus 344 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~-~ 422 (488)
-.....=|.+++.. ++..... +++.|.+-|++.++.|+..+|.+|..++..+... |...++ .
T Consensus 18 pgy~~~Eia~~t~~-s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~-----------f~~~~~~~ 80 (122)
T cd03572 18 PGYLYEEIAKLTRK-SVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD-----------FKRELQRN 80 (122)
T ss_pred chHHHHHHHHHHHc-CHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH-----------HHHHHHHh
Confidence 34444555566554 2233332 5788889899889999999999999999887643 444443 4
Q ss_pred hccHHHHHHhhcC--------CCHHHHHHHHHHHHHhcCCC
Q 011328 423 AEGLEKIENLQSH--------DNTEIYEKAVKILETYWVEE 455 (488)
Q Consensus 423 ~g~~~~L~~l~~~--------~~~~v~~~a~~~l~~~~~~~ 455 (488)
...++.+.++... .+..|+..|..+++-+|+.+
T Consensus 81 ~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~~ 121 (122)
T cd03572 81 SAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSYS 121 (122)
T ss_pred HHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhccC
Confidence 4456667776552 35679999999999999875
No 267
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=92.04 E-value=4.7 Score=46.49 Aligned_cols=267 Identities=12% Similarity=0.109 Sum_probs=141.4
Q ss_pred CCCChhHHHHHHHHHHHhcCCC---chhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCC
Q 011328 84 RDDFPQLQFEAAWALTNIASGT---SENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGA 159 (488)
Q Consensus 84 ~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 159 (488)
+.+ ..++..|+..|..++..- ++....-.+..++.++..++.+ .+.++++..+.++.++..... ..+ .. +
T Consensus 1148 ~~n-~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~nI-kS-G 1221 (1780)
T PLN03076 1148 SEN-LSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---NNV-KS-G 1221 (1780)
T ss_pred Ccc-hhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---hhh-hc-C
Confidence 334 678888888887877522 2211122234566777776654 778999999999998864321 122 21 4
Q ss_pred hHHHHHHhc---ccccHhHHHHHHHHHHHhhcCC-CCCC---hhhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhcc--
Q 011328 160 LMPLLAQFN---EHAKLSMLRNATWTLSNFCRGK-PQPL---FEQTRPALPALERLIHSN-DDEVLTDACWALSYLSD-- 229 (488)
Q Consensus 160 l~~L~~ll~---~~~~~~v~~~a~~~L~~l~~~~-~~~~---~~~~~~~~~~l~~ll~~~-~~~v~~~al~~L~~l~~-- 229 (488)
...++..+. .+.++.+...|..++..+..+. +... ......++..+.++.... +.++-..|+..|++++.
T Consensus 1222 WktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076 1222 WKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred cHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence 444554442 3456677777777777766543 1111 223345555555555433 35555555555554311
Q ss_pred --CCc-----------------------hh------HHH--HHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh
Q 011328 230 --GTN-----------------------DK------IQA--VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 276 (488)
Q Consensus 230 --~~~-----------------------~~------~~~--~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 276 (488)
..- .. ... -.-..++..|..+..++.++||..|+.+|-.+.......
T Consensus 1302 a~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076 1302 AEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred HhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc
Confidence 000 00 000 001123333444456788899999999887766432211
Q ss_pred h-----HHHhhCCChHHHHHHhccc------------------c----hhhHHH---HHHHHHHHHhcCCHHHHHHHHHc
Q 011328 277 T-----QCIINHQALPCLLDLLTQN------------------Y----KKSIKK---EACWTISNITAGNVNQIQAIIEA 326 (488)
Q Consensus 277 ~-----~~~~~~~~~~~L~~lL~~~------------------~----~~~v~~---~a~~~L~nl~~~~~~~~~~l~~~ 326 (488)
. ..++. +++-.++..+++. . +..+.. .|+..+.++....-+....++.
T Consensus 1382 Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~- 1459 (1780)
T PLN03076 1382 FSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLK- 1459 (1780)
T ss_pred CCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 1 11222 3344444444211 0 001222 3333333333332333333333
Q ss_pred CChHHHHHHHhcCChhHHHHHHHHHHHhccCC
Q 011328 327 GIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 358 (488)
Q Consensus 327 ~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 358 (488)
+++..|..++..++..+...+..+|.++....
T Consensus 1460 ~~l~ll~~ci~q~n~~la~ig~~~l~~li~~n 1491 (1780)
T PLN03076 1460 KVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNA 1491 (1780)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence 46777777777788889999999999988644
No 268
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=91.87 E-value=12 Score=35.77 Aligned_cols=132 Identities=14% Similarity=0.122 Sum_probs=75.0
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh---cCChhHHHHHHHHHHHhccCCCH------H-----HHH
Q 011328 299 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL---NAEFEIKKEAAWAISNATSGGSN------E-----QIK 364 (488)
Q Consensus 299 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~---~~~~~v~~~a~~aL~~l~~~~~~------~-----~~~ 364 (488)
..-|..|+..+..++....+....++. +.+..++.-.. +.++.-+..|+..++.++..+.. + ...
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 445678888888888653333333322 12222222111 23678888999999999876621 0 234
Q ss_pred HHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHH
Q 011328 365 FLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 444 (488)
Q Consensus 365 ~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a 444 (488)
.+....+++.|. --.+..+-++..|++.+..+-..-+ .+.+. +.++.+...+.+++.-|+..|
T Consensus 304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~--------------~~~l~--~~~~~l~~~L~~~~~vv~tyA 366 (370)
T PF08506_consen 304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP--------------KEQLL--QIFPLLVNHLQSSSYVVHTYA 366 (370)
T ss_dssp HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS---------------HHHHH--HHHHHHHHHTTSS-HHHHHHH
T ss_pred HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC--------------HHHHH--HHHHHHHHHhCCCCcchhhhh
Confidence 445556666666 2123456677777777765543322 23332 357889999999999898887
Q ss_pred HHHH
Q 011328 445 VKIL 448 (488)
Q Consensus 445 ~~~l 448 (488)
+..+
T Consensus 367 A~~i 370 (370)
T PF08506_consen 367 AIAI 370 (370)
T ss_dssp HHHH
T ss_pred hhhC
Confidence 7653
No 269
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.74 E-value=0.72 Score=33.95 Aligned_cols=77 Identities=10% Similarity=0.086 Sum_probs=57.8
Q ss_pred hHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHH
Q 011328 286 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKF 365 (488)
Q Consensus 286 ~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 365 (488)
+...+.-+.++ ...+|..++..|..+..... ....-..+++..+...++++|+-|-.+|..+|..++..........
T Consensus 5 ~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~ 81 (92)
T PF10363_consen 5 LQEALSDLNDP-LPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI 81 (92)
T ss_pred HHHHHHHccCC-CcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence 45567777888 78899999999999998544 1111224578888889999999999999999999997654333333
No 270
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=91.74 E-value=1.5 Score=32.56 Aligned_cols=70 Identities=20% Similarity=0.237 Sum_probs=57.9
Q ss_pred HCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHH
Q 011328 368 SQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKI 447 (488)
Q Consensus 368 ~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~ 447 (488)
+...+..|++.+..++......++..+..+++... ....+.+.|+.+.|.++....+++.+.....+
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~-------------a~~~l~~iG~~~fL~klr~~~~~~~~~~id~i 94 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPY-------------AAQILRDIGAVRFLSKLRPNVEPNLQAEIDEI 94 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcH-------------HHHHHHHccHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34568888888888888888999999999887765 36778899999999999988889988888877
Q ss_pred HHH
Q 011328 448 LET 450 (488)
Q Consensus 448 l~~ 450 (488)
++.
T Consensus 95 l~~ 97 (98)
T PF14726_consen 95 LDQ 97 (98)
T ss_pred Hhc
Confidence 765
No 271
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=91.66 E-value=0.7 Score=37.29 Aligned_cols=74 Identities=12% Similarity=0.080 Sum_probs=61.9
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 103 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~ 103 (488)
+.+..|.+.|++.++.+++.|+..|-.++.+-.......+...+++..|++++.....+.|+..++..+...+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 66778899999999999999999999988765455667777889999999999865448999999998887765
No 272
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=91.59 E-value=10 Score=34.27 Aligned_cols=175 Identities=17% Similarity=0.156 Sum_probs=99.0
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCC-------CchhhHHHHhCCCHHHHHHhhCCCC----HHHHHHHHHHHhh
Q 011328 74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASG-------TSENTRVVIDHGAVPIFVRLLSSPT----DDVREQAVWALGN 142 (488)
Q Consensus 74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~-------~~~~~~~~~~~g~i~~L~~~L~~~~----~~v~~~a~~~L~~ 142 (488)
+-+.+.+-+.++. ....++..+..++.. ..+.|-.+.-.+.+|.++.-+++++ ......++..|+.
T Consensus 65 lq~Ll~KGL~Ss~---t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~ 141 (262)
T PF14225_consen 65 LQPLLLKGLRSSS---TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQ 141 (262)
T ss_pred HHHHHhCccCCCC---cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHH
Confidence 3334444455544 345566666666541 1223333333345677777777655 2344556678888
Q ss_pred hhCCCchhHHHHHhcCChHHHHHHhcccc---cHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHH
Q 011328 143 VAGDSPKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTD 219 (488)
Q Consensus 143 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~ 219 (488)
+|.... ...+..++....+.. ..+....++..|..-.. | ......+-.++.++.++-+.++..
T Consensus 142 ~a~~~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P----~~~~~~l~~Ll~lL~n~~~w~~~~ 207 (262)
T PF14225_consen 142 VAEAQG--------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--P----DHEFQILTFLLGLLENGPPWLRRK 207 (262)
T ss_pred HHHhCC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--c----hhHHHHHHHHHHHHhCCcHHHHHH
Confidence 874322 123444444443322 23334444444443211 1 123456777889999998999999
Q ss_pred HHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhh
Q 011328 220 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 270 (488)
Q Consensus 220 al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~ 270 (488)
++.+|..+....+-... ...+++..+.++++.+. -..|+.+|-...
T Consensus 208 ~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~~---~~eAL~VLd~~v 253 (262)
T PF14225_consen 208 TLQILKVLLPHVDMRSP--HGADLISPLLRLLQTDL---WMEALEVLDEIV 253 (262)
T ss_pred HHHHHHHHhccccCCCC--cchHHHHHHHHHhCCcc---HHHHHHHHHHHH
Confidence 99999998876543322 44468888888887754 444555554443
No 273
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.30 E-value=32 Score=39.50 Aligned_cols=236 Identities=16% Similarity=0.083 Sum_probs=123.8
Q ss_pred HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCc
Q 011328 70 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSP 148 (488)
Q Consensus 70 ~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~ 148 (488)
+..-.+..++..|..++ +..+-.+..+++.++...++. ..+ .+..+.+++-+.+ .++..|..-..+++.+-.+..
T Consensus 873 v~~~~~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~~-~f~--a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvg 948 (2067)
T KOG1822|consen 873 VRSSALTLIVNSLINPN-PKLRCAAAEALARLAQVVGSA-PFV--ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVG 948 (2067)
T ss_pred HHHHHHHHHhhhhccCC-hHHHHHHHHHHHHHHHhcccc-chH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcc
Confidence 33344556666777777 888888888888888722211 111 1234455555544 666677666667776654332
Q ss_pred hhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCC---hhHHHHH-----
Q 011328 149 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND---DEVLTDA----- 220 (488)
Q Consensus 149 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~---~~v~~~a----- 220 (488)
.....-.....+..+..+..++.++.|+..++.++..+...............+..+..++.+.. .++...-
T Consensus 949 s~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~ 1028 (2067)
T KOG1822|consen 949 SIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFN 1028 (2067)
T ss_pred CCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccc
Confidence 22111112234666777775666779999999999988877644445555556666666665322 1222111
Q ss_pred --------HHHHHHhccCCch--hHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHH
Q 011328 221 --------CWALSYLSDGTND--KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL 290 (488)
Q Consensus 221 --------l~~L~~l~~~~~~--~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~ 290 (488)
..+++.=...+.. ... ..+...+-...-++.++++-++..+..++-++-...+... --.-++..+.
T Consensus 1029 ~~~~~~alittlgpeL~~N~~~d~t~-~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~---n~~~lV~~L~ 1104 (2067)
T KOG1822|consen 1029 GDDDEDALITTLGPELGPNGDKDSTS-TLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHV---NLDSLVLQLC 1104 (2067)
T ss_pred cchhHHHHHHhcccccCCCCcccchh-HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhc---cHHHHHHHHH
Confidence 1111111111110 111 1111222222333455566777777777777665444211 1113455566
Q ss_pred HHhcccchhhHHHHHHHHHHHHhc
Q 011328 291 DLLTQNYKKSIKKEACWTISNITA 314 (488)
Q Consensus 291 ~lL~~~~~~~v~~~a~~~L~nl~~ 314 (488)
.++.+. ..-.|.....++..+..
T Consensus 1105 ~~l~s~-~~i~r~~~~~clrql~~ 1127 (2067)
T KOG1822|consen 1105 SLLSSS-YLILRRASFSCLRQLVQ 1127 (2067)
T ss_pred HHhcch-hhhhhhhHHhhhhHHhH
Confidence 666665 44455555555555544
No 274
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=91.29 E-value=1.1 Score=36.30 Aligned_cols=76 Identities=18% Similarity=0.286 Sum_probs=62.9
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC-CCHHHHHHHHHHHH
Q 011328 371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILE 449 (488)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~-~~~~v~~~a~~~l~ 449 (488)
++..|..-+.+.++.++..++..|..+++.+... |...+.+.+.++.|..+... .+++|+.+...++.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~-----------fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~ 106 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKR-----------FHQEVASRDFTQELKKLINDRVHPTVKEKLREVVK 106 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH-----------HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 5667777788899999999999999999877643 67777778888889998777 78999999999999
Q ss_pred HhcCCCCC
Q 011328 450 TYWVEEDE 457 (488)
Q Consensus 450 ~~~~~~~~ 457 (488)
........
T Consensus 107 ~W~~~f~~ 114 (144)
T cd03568 107 QWADEFKN 114 (144)
T ss_pred HHHHHhCC
Confidence 87766654
No 275
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=91.01 E-value=1.5 Score=35.41 Aligned_cols=72 Identities=11% Similarity=0.094 Sum_probs=62.2
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC-CCHHHHHHHHHHHHHHHH
Q 011328 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPRIVTVCLEGLENILK 399 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~al~~L~~l~~ 399 (488)
++..|..-+.++++.++..|+..|-.++.+++......+....++..|..++.. .++.|+..++..+.....
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 566677778888999999999999999999998888888999999999999987 778888888887776543
No 276
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=91.00 E-value=2.8 Score=43.64 Aligned_cols=172 Identities=17% Similarity=0.160 Sum_probs=89.7
Q ss_pred chHHHHHHhhccCChhH--HHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC----CCcchHhHHHHHHhHhhcCC
Q 011328 200 PALPALERLIHSNDDEV--LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH----PSPSVLIPALRTVGNIVTGD 273 (488)
Q Consensus 200 ~~~~~l~~ll~~~~~~v--~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~ 273 (488)
..+..+.+++.+.+..- ....+..+......+. . ..+..+..+++. .++.++..|+-+++.+....
T Consensus 395 ~av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt---~-----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~ 466 (618)
T PF01347_consen 395 PAVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRPT---E-----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKY 466 (618)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHHHT--------H-----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCC---H-----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCce
Confidence 45666777776643222 2222222222222221 1 334555555554 34567788888887776532
Q ss_pred chh---------hHHHhhCCChHHHHHHhcc---cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--
Q 011328 274 DMQ---------TQCIINHQALPCLLDLLTQ---NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-- 339 (488)
Q Consensus 274 ~~~---------~~~~~~~~~~~~L~~lL~~---~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-- 339 (488)
... ........+++.+...+.. ..+..-+..++.+|+|+... . .++.+..++...
T Consensus 467 c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~--~---------~i~~l~~~i~~~~~ 535 (618)
T PF01347_consen 467 CVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP--E---------SIPVLLPYIEGKEE 535 (618)
T ss_dssp HTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G--G---------GHHHHHTTSTTSS-
T ss_pred eecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc--h---------hhHHHHhHhhhccc
Confidence 111 0112233566677776652 22557788899999999542 2 566666666655
Q ss_pred -ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhhh
Q 011328 340 -EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC--PDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 340 -~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~al~~L~~l~~~~~ 402 (488)
...+|..|++||..++... ++. +.+.|..++.+ .+.++|..|... ++...+
T Consensus 536 ~~~~~R~~Ai~Alr~~~~~~-~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~---lm~~~P 589 (618)
T PF01347_consen 536 VPHFIRVAAIQALRRLAKHC-PEK--------VREILLPIFMNTTEDPEVRIAAYLI---LMRCNP 589 (618)
T ss_dssp S-HHHHHHHHHTTTTGGGT--HHH--------HHHHHHHHHH-TTS-HHHHHHHHHH---HHHT--
T ss_pred cchHHHHHHHHHHHHHhhcC-cHH--------HHHHHHHHhcCCCCChhHHHHHHHH---HHhcCC
Confidence 6789999999999997654 322 23444455543 457788776533 444434
No 277
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.74 E-value=27 Score=37.60 Aligned_cols=65 Identities=12% Similarity=0.107 Sum_probs=42.4
Q ss_pred HHHHHH-hhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHH
Q 011328 118 VPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL 183 (488)
Q Consensus 118 i~~L~~-~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L 183 (488)
+..|-. +|+.++.+++...+..+..+...+++.-..+-+...++.++..+ ......++...+..|
T Consensus 468 vqmLqdiFLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnm-egfPsslqvkiLkil 533 (2799)
T KOG1788|consen 468 VQMLQDIFLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNM-EGFPSSLQVKILKIL 533 (2799)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhh-cCCChHHHHHHHHHH
Confidence 334443 46678888888888888888877777666666666777777777 333334444444443
No 278
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=90.74 E-value=1.4 Score=35.53 Aligned_cols=77 Identities=17% Similarity=0.302 Sum_probs=62.2
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc-CCCHHHHHHHHHHHH
Q 011328 371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS-HDNTEIYEKAVKILE 449 (488)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~-~~~~~v~~~a~~~l~ 449 (488)
++..|.+-+.++++.++..|+..|..+++.+... |...+.+.+.++.|..+.. ..+++|++++..++.
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~-----------fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~ 110 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTH-----------FHDEVASREFMDELKDLIKTTKNEEVRQKILELIQ 110 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHH-----------HHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHH
Confidence 5777778888899999999999999999875432 5677777888888888865 678899999999998
Q ss_pred HhcCCCCCC
Q 011328 450 TYWVEEDED 458 (488)
Q Consensus 450 ~~~~~~~~~ 458 (488)
........+
T Consensus 111 ~W~~~f~~~ 119 (142)
T cd03569 111 AWALAFRNK 119 (142)
T ss_pred HHHHHhCCC
Confidence 877666553
No 279
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.65 E-value=24 Score=36.82 Aligned_cols=400 Identities=13% Similarity=0.147 Sum_probs=199.0
Q ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHhccC---CCccHHHHHH---cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCC
Q 011328 33 PAMVAGVWSD--DRNIQLDATTQFRKLLSIE---RSPPINEVIQ---SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG 104 (488)
Q Consensus 33 ~~l~~~L~s~--~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~---~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~ 104 (488)
-.++.++.++ ++++|..|+..+.+.+..+ .++....+.+ .-+-..++.++-+.. ..+|.+--.++.-++..
T Consensus 40 l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~-~~iQ~qlseal~~Ig~~ 118 (960)
T KOG1992|consen 40 LLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSP-FNIQKQLSEALSLIGKR 118 (960)
T ss_pred HHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHhcc
Confidence 4566777653 6889999999999988742 1111112221 122334456666665 68999989999999873
Q ss_pred C-chhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhC-CCchhHH--HHHh----cC-ChHHHHHHhcc------
Q 011328 105 T-SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG-DSPKCRD--LVLS----NG-ALMPLLAQFNE------ 169 (488)
Q Consensus 105 ~-~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~-~~~~~~~--~~~~----~~-~l~~L~~ll~~------ 169 (488)
+ |+....+ ++.|+.-+++.+-.+-...+.+-..+.. ..+++|. ...+ .+ .-.++..++.+
T Consensus 119 DFP~kWptL-----l~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~ 193 (960)
T KOG1992|consen 119 DFPDKWPTL-----LPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQ 193 (960)
T ss_pred ccchhhHHH-----HHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh
Confidence 3 5554443 5777777777666555555544443431 1111111 1111 01 11233333311
Q ss_pred --cccHhHH-------HHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccCC-------------hhHHHHHHHHHHH
Q 011328 170 --HAKLSML-------RNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSND-------------DEVLTDACWALSY 226 (488)
Q Consensus 170 --~~~~~v~-------~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~~-------------~~v~~~al~~L~~ 226 (488)
.++.... .-.+.....|...+ |.--.......++...++++.++ ..++...|..+.-
T Consensus 194 ~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~L 273 (960)
T KOG1992|consen 194 RHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNL 273 (960)
T ss_pred hcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHH
Confidence 1122211 12222233333322 22222233556667777776222 3456667777766
Q ss_pred hccCCchhHHHHHHhCCHHHHHHhcCCCC-----cchHhHHHHHHhHhhcCCc--------------------------h
Q 011328 227 LSDGTNDKIQAVIEAGVCPRLVELLRHPS-----PSVLIPALRTVGNIVTGDD--------------------------M 275 (488)
Q Consensus 227 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-----~~v~~~a~~~L~~l~~~~~--------------------------~ 275 (488)
.+...++..+.++. +++...-.+|.+-. +.+...|+..|.+++.... .
T Consensus 274 Y~~kYeEef~~fl~-~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~ 352 (960)
T KOG1992|consen 274 YATKYEEEFQPFLP-DFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILRE 352 (960)
T ss_pred HHHhhHHHHHhhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccch
Confidence 66666555554443 34444445554422 2344456666666664211 1
Q ss_pred hhHHHhhCCChHHHHHHhcccchhhH-HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH-h--cCChhHHHHHHHHH
Q 011328 276 QTQCIINHQALPCLLDLLTQNYKKSI-KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL-L--NAEFEIKKEAAWAI 351 (488)
Q Consensus 276 ~~~~~~~~~~~~~L~~lL~~~~~~~v-~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll-~--~~~~~v~~~a~~aL 351 (488)
.-..+.+.+-++.+-+-|... +.+. |+.|+..+..|+...+.....++.. .+..++.-. . +.++.-+..+....
T Consensus 353 eDeElFED~pleYiRRDlEGs-DvdTRRR~a~dlvrgL~~~fe~~vt~v~~~-~v~~~l~~y~~nPS~nWk~kd~aiyL~ 430 (960)
T KOG1992|consen 353 EDEELFEDNPLEYIRRDLEGS-DVDTRRRAAIDLVRGLCKNFEGQVTGVFSS-EVQRLLDQYSKNPSGNWKKKDRAIYLV 430 (960)
T ss_pred hhHHHhccCHHHHHHHhcccC-CcchhHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHhccCCCccccccchhhhhh
Confidence 112233445566666666666 4444 4567777778877544433333322 222232222 2 23666677777777
Q ss_pred HHhccCCCHHHHHHHHH---CCChHHHH-----hhcC---CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHH
Q 011328 352 SNATSGGSNEQIKFLVS---QGCIKPLC-----DLLN---CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAI 420 (488)
Q Consensus 352 ~~l~~~~~~~~~~~l~~---~~~i~~L~-----~ll~---~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l 420 (488)
..++..+.......-.. -++++.+. ++.. .+.|-++..+++-+. ..-... ....+
T Consensus 431 talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~---~FR~ql-----------~~~~l 496 (960)
T KOG1992|consen 431 TALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIY---TFRNQL-----------GKEHL 496 (960)
T ss_pred HHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceee---eecccC-----------ChHHH
Confidence 77776542110000000 01111111 1122 122333333332221 111100 12222
Q ss_pred HhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 011328 421 DDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDE 457 (488)
Q Consensus 421 ~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 457 (488)
.. .+..+.+.+..++.-|...|+..+++++.-.++
T Consensus 497 m~--~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~ 531 (960)
T KOG1992|consen 497 MA--LLPRLIRFLEAESRVVHSYAAIAIEKLLTVREN 531 (960)
T ss_pred HH--HHHHHHHhccCcchHHHHHHHHHHHhccccccC
Confidence 22 367788888888899999999999999988776
No 280
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=90.54 E-value=1.1 Score=35.84 Aligned_cols=74 Identities=9% Similarity=0.021 Sum_probs=60.3
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChh-HHHHHHHHHHHhcC
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ-LQFEAAWALTNIAS 103 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~-v~~~a~~~L~~l~~ 103 (488)
..+..|.+.|++.++.+++.|+..|-.++.+-.......+...+++..|++++.+..... ++..++..+...+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 567788899999999999999999999888754555677778889999999998765434 88888888877665
No 281
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=90.40 E-value=2.8 Score=41.46 Aligned_cols=103 Identities=14% Similarity=0.076 Sum_probs=73.3
Q ss_pred cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhH
Q 011328 72 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151 (488)
Q Consensus 72 ~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (488)
.|.+..+++.+.+++ ..+|..++.+|+.+.. .-.-.+..+-+|.+..|.+-+-+..+.+|..|+.+|+.+-+....-.
T Consensus 90 ~~~~~h~lRg~eskd-k~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 90 AGTFYHLLRGTESKD-KKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHHhcccCcc-hhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 467788888888888 8999999999999987 33333344455777777776767789999999999998864433211
Q ss_pred HHHHhcCChHHHHHHhcccccHhHHHHHHH
Q 011328 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATW 181 (488)
Q Consensus 152 ~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~ 181 (488)
.. ....+...+..+++.++++.|+.
T Consensus 168 n~-----~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 168 NR-----IVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred HH-----HHHHHHHHHhcCcHHHHHHHHHH
Confidence 12 23356667767777788876654
No 282
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=90.34 E-value=16 Score=37.67 Aligned_cols=136 Identities=19% Similarity=0.180 Sum_probs=82.6
Q ss_pred hchHHHHHHhhccC----ChhHHHHHHHHHHHhcc----CCchhHHHHHHhCCHHHHHHhc----CCCCcchHhHHHHHH
Q 011328 199 RPALPALERLIHSN----DDEVLTDACWALSYLSD----GTNDKIQAVIEAGVCPRLVELL----RHPSPSVLIPALRTV 266 (488)
Q Consensus 199 ~~~~~~l~~ll~~~----~~~v~~~al~~L~~l~~----~~~~~~~~~~~~~~l~~L~~lL----~~~~~~v~~~a~~~L 266 (488)
...+..+..++.++ +..++..++-+++.+.. ..+..-. .+-..+++.+...| ...+...+...+.+|
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL 470 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPD-FVLEELLKYLHELLQQAVSKGDEEEIQLYLKAL 470 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCCh-hhHHHHHHHHHHHHHHHHhcCCchheeeHHHhh
Confidence 34566677777643 45677777777776663 1211101 11123455555544 334556677889999
Q ss_pred hHhhcCCchhhHHHhhCCChHHHHHHhc--ccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--Chh
Q 011328 267 GNIVTGDDMQTQCIINHQALPCLLDLLT--QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFE 342 (488)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~ 342 (488)
+|+.... .+..+...+. ......+|..|+++|..++...+.. +-+.++.++.+. +++
T Consensus 471 GN~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~E 531 (574)
T smart00638 471 GNAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPE 531 (574)
T ss_pred hccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChH
Confidence 9986522 2344444443 2225689999999999998644443 344556666654 778
Q ss_pred HHHHHHHHHHHh
Q 011328 343 IKKEAAWAISNA 354 (488)
Q Consensus 343 v~~~a~~aL~~l 354 (488)
+|..|..+|...
T Consensus 532 vRiaA~~~lm~t 543 (574)
T smart00638 532 VRMAAVLVLMET 543 (574)
T ss_pred HHHHHHHHHHhc
Confidence 998888777655
No 283
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=89.97 E-value=7.1 Score=32.50 Aligned_cols=113 Identities=16% Similarity=0.191 Sum_probs=71.5
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC--CCHHHHHHhhCC-CCHHHHHHHHHHHhhhh---CC
Q 011328 73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH--GAVPIFVRLLSS-PTDDVREQAVWALGNVA---GD 146 (488)
Q Consensus 73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~---~~ 146 (488)
..+..+..+|++++ ++-|-.++..+..++..++ .+.+.+. ..+..++..|+. +.+.+.+.++.++..+. .+
T Consensus 25 ~l~~ri~~LL~s~~-~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 25 KLVTRINSLLQSKS-AYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHhCCCC-hhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 45667888999988 7888888888888887432 2333333 357788888887 56778888888888876 34
Q ss_pred CchhHHHHHhcC---ChHHHHHHhcccccHhHHHHHHHHHHHhhcCCC
Q 011328 147 SPKCRDLVLSNG---ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 191 (488)
Q Consensus 147 ~~~~~~~~~~~~---~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~ 191 (488)
.++..+.+.... +++.++.++. +......++.+|..+....+
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~---~~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQ---DSSCPETALDALATLLPHHP 146 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHCC
Confidence 444433333222 2334444441 14556677777777665543
No 284
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=89.89 E-value=1.9 Score=34.48 Aligned_cols=74 Identities=15% Similarity=0.095 Sum_probs=59.6
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCC--CChhHHHHHHHHHHHhcC
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD--DFPQLQFEAAWALTNIAS 103 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~~v~~~a~~~L~~l~~ 103 (488)
..+..|.+.|+++++.+++.|+..|-.+..+-.......+....++..|++++... ..+.++..++..+...+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999988776444556666668888899999763 337899999998888765
No 285
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=89.68 E-value=24 Score=35.49 Aligned_cols=161 Identities=14% Similarity=0.014 Sum_probs=93.6
Q ss_pred ChHHHHHHhccc-chhhHHHHHHHHH---HHHhcC-CHHHH---HHHHHcCChHHHHH----HHhcCChhHHHHHHHHHH
Q 011328 285 ALPCLLDLLTQN-YKKSIKKEACWTI---SNITAG-NVNQI---QAIIEAGIIGPLVN----LLLNAEFEIKKEAAWAIS 352 (488)
Q Consensus 285 ~~~~L~~lL~~~-~~~~v~~~a~~~L---~nl~~~-~~~~~---~~l~~~~~l~~L~~----ll~~~~~~v~~~a~~aL~ 352 (488)
++..+..-+.+. .+.++|..++..+ .....+ .+... ...+..++.+.+-. --...+...|..+..+|+
T Consensus 320 ~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG 399 (501)
T PF13001_consen 320 ILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLG 399 (501)
T ss_pred HHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHH
Confidence 334444444333 1456666666666 444442 23332 33444566665510 011236789999999999
Q ss_pred HhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHh
Q 011328 353 NATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL 432 (488)
Q Consensus 353 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l 432 (488)
.++.....-.. .+-+++..|.+-++.++++++..+-++|..+.......... ...-........+...
T Consensus 400 ~L~~~~p~l~~---~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~---------~~~~~~~~~~~l~~~~ 467 (501)
T PF13001_consen 400 LLAKRAPSLFS---KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDD---------EDEQKRLLLELLLLSY 467 (501)
T ss_pred HHHccCccccc---ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccc---------hhHHHHHHHHHHHHhh
Confidence 99986532211 12357888888888899999999999999887654432210 0000000001122233
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCCCC
Q 011328 433 QSHDNTEIYEKAVKILETYWVEEDE 457 (488)
Q Consensus 433 ~~~~~~~v~~~a~~~l~~~~~~~~~ 457 (488)
..+....++..|.+..+++|+.++-
T Consensus 468 ~~~~~~~~R~~avk~an~~fpf~d~ 492 (501)
T PF13001_consen 468 IQSEVRSCRYAAVKYANACFPFSDV 492 (501)
T ss_pred ccchhHHHHHHHHHHHHHhCCccch
Confidence 3455667899999999999988753
No 286
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=89.22 E-value=10 Score=39.57 Aligned_cols=158 Identities=15% Similarity=0.187 Sum_probs=109.6
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
..|..|+..|.|.+..+...+-..+...+... .+. -++..|+...-+..+ ..++.+|..+- .|..+
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~-~~~-------~l~~~l~~y~~~t~s----~~~~~il~~~~--~P~~K 69 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSD-REP-------WLVNGLVDYYLSTNS----QRALEILVGVQ--EPHDK 69 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhcc-chH-------HHHHHHHHHHhhcCc----HHHHHHHHhcC--CccHH
Confidence 35677999999999888888888888876654 221 135566665444332 34455565442 23212
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
.++..|-.++.. +..|-.++..|+.+....+..-..+.+...+..|++.|..+.+..+...|+.+|..|.-.
T Consensus 70 ------~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 70 ------HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred ------HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 234556666654 567888999999999887777778888899999999998888999999999999988876
Q ss_pred CCCCChhhhhchHHHHHHhh
Q 011328 190 KPQPLFEQTRPALPALERLI 209 (488)
Q Consensus 190 ~~~~~~~~~~~~~~~l~~ll 209 (488)
.+.........++.....++
T Consensus 142 ip~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 142 IPSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred ccchhhHHHHHHHHHHHHHH
Confidence 65554445555565555555
No 287
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=88.96 E-value=1.8 Score=34.78 Aligned_cols=74 Identities=12% Similarity=0.023 Sum_probs=60.1
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcC-----CCChhHHHHHHHHHHHhcC
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR-----DDFPQLQFEAAWALTNIAS 103 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~-----~~~~~v~~~a~~~L~~l~~ 103 (488)
..+..|.+.|++.++.+++.|+..|-.+..+-.......+...+++..|++++.. ...+.|+...+..+...+.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 5577889999999999999999999998876655566777788999999999963 1237899998888877664
No 288
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=88.94 E-value=35 Score=36.31 Aligned_cols=116 Identities=14% Similarity=0.148 Sum_probs=72.9
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhcc
Q 011328 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNM 407 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~ 407 (488)
+...+...+..++..+....+.++.++..-......+ ...-.+.-..-.+..-..+......+|.++....+..
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~--- 515 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSH--- 515 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH---
Confidence 4556666777777778888888888886433111000 0011111111111111234455556666665554433
Q ss_pred CCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 011328 408 GNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDE 457 (488)
Q Consensus 408 ~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 457 (488)
....+.+.+....+-.+.=|+++++++.|..++...|+.+.-
T Consensus 516 --------L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R 557 (727)
T PF12726_consen 516 --------LKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGR 557 (727)
T ss_pred --------HHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcH
Confidence 578888889999999999999999999999999999975443
No 289
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=88.88 E-value=3.8 Score=32.69 Aligned_cols=75 Identities=8% Similarity=-0.025 Sum_probs=62.0
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC---CCHHHHHHHHHHHHHHHHhhh
Q 011328 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC---PDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~---~~~~v~~~al~~L~~l~~~~~ 402 (488)
++..|..-++++++.++..|+..|-.++.++.......+.....+..|..++.. .++.++..++..+........
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 566677788889999999999999999999988888888887888889999875 467899998888877655433
No 290
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=88.51 E-value=4.6 Score=31.43 Aligned_cols=87 Identities=17% Similarity=0.213 Sum_probs=57.6
Q ss_pred HHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHC-CChHHHHhhcCCCC---
Q 011328 308 TISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ-GCIKPLCDLLNCPD--- 383 (488)
Q Consensus 308 ~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~i~~L~~ll~~~~--- 383 (488)
=|.+++..++..... ++..|.+-|+++++.|+.+++.+|..++..+.+++...+... ..+..+.+.-..+|
T Consensus 24 Eia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~ 98 (122)
T cd03572 24 EIAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLK 98 (122)
T ss_pred HHHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCccc
Confidence 344555544443332 566788888989999999999999999999988877776553 23344333322222
Q ss_pred -----HHHHHHHHHHHHHHHH
Q 011328 384 -----PRIVTVCLEGLENILK 399 (488)
Q Consensus 384 -----~~v~~~al~~L~~l~~ 399 (488)
..||..|-+++..++.
T Consensus 99 Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 99 GDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred CcchhHHHHHHHHHHHHHHhc
Confidence 3577777777776654
No 291
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=88.26 E-value=25 Score=33.81 Aligned_cols=220 Identities=15% Similarity=0.154 Sum_probs=123.4
Q ss_pred cHhHHHHHHHHHHHhhcCCCCC---ChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHH
Q 011328 172 KLSMLRNATWTLSNFCRGKPQP---LFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 246 (488)
Q Consensus 172 ~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~~~~~l~~ll~~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~ 246 (488)
+..+..+|+.+++.+..+..-. ......-++...+..+.++ +..+....+++|..---.. .++....+..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~-----~~~~~~~~~~ 133 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSP-----KIMTSDRVER 133 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC-----cccchhhHHH
Confidence 6678889999999888765211 1112223555566666543 4567777777776532221 1223333444
Q ss_pred HHHhc---C--CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc--C-CHH
Q 011328 247 LVELL---R--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--G-NVN 318 (488)
Q Consensus 247 L~~lL---~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~-~~~ 318 (488)
++..+ . -++..+....+.++.++....+.....-. ...++.++..+-+. ...+|..|...+..+.. + +..
T Consensus 134 l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~-~~W~~~l~~~l~~~-~k~ir~~a~~l~~~~~~~l~~~~~ 211 (372)
T PF12231_consen 134 LLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHA-DIWFPILFPDLLSS-AKDIRTKAISLLLEAKKCLGPNKE 211 (372)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHhChhHH
Confidence 44443 2 24567888889999998876654422221 13677787777676 66777776655555543 2 122
Q ss_pred HHHH---HHHc----C-----ChHHHHHHHhcCChhHHHHHHHHHHHhccCCC-HHHHHHHHHCCChHHHHhhcCCCCHH
Q 011328 319 QIQA---IIEA----G-----IIGPLVNLLLNAEFEIKKEAAWAISNATSGGS-NEQIKFLVSQGCIKPLCDLLNCPDPR 385 (488)
Q Consensus 319 ~~~~---l~~~----~-----~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~ 385 (488)
..+. ..+. + +.+.|..++.+++....-.-+|...-+..... .+....+ +..+.....+++++++.
T Consensus 212 ~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~--n~wL~v~e~cFn~~d~~ 289 (372)
T PF12231_consen 212 LSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHL--NEWLKVPEKCFNSSDPQ 289 (372)
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhH--hHHHHHHHHHhcCCCHH
Confidence 1111 2221 2 23346666666333222222333333332222 1222222 23567777789999999
Q ss_pred HHHHHHHHHHHHHHh
Q 011328 386 IVTVCLEGLENILKA 400 (488)
Q Consensus 386 v~~~al~~L~~l~~~ 400 (488)
++..|..+-..++..
T Consensus 290 ~k~~A~~aW~~liy~ 304 (372)
T PF12231_consen 290 VKIQAFKAWRRLIYA 304 (372)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888763
No 292
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=87.78 E-value=6.4 Score=36.17 Aligned_cols=139 Identities=12% Similarity=0.158 Sum_probs=80.9
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh-HHHHhCCCHHHHHH----hhC--------CCCHHHHHHHHHH
Q 011328 73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT-RVVIDHGAVPIFVR----LLS--------SPTDDVREQAVWA 139 (488)
Q Consensus 73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~----~L~--------~~~~~v~~~a~~~ 139 (488)
=++|.++.++.+.+ +.+|..++.++..+....+... ..+...|..+.+.. ++. .++..+...+..+
T Consensus 119 liiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 119 LIIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred HHHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 47899999999998 9999999999999998444333 23556665554444 333 2456677778888
Q ss_pred HhhhhCC---C-chhHHHHHhcCChHHHHHHhcccc---cHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC
Q 011328 140 LGNVAGD---S-PKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN 212 (488)
Q Consensus 140 L~~l~~~---~-~~~~~~~~~~~~l~~L~~ll~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~ 212 (488)
+..++.. . ...+......-.-+.++..+.... .+.++...+..+..+...-..........+++.+.+.+.++
T Consensus 198 L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 198 LLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 8877431 1 111111111111112333332222 36666666666666655433444445566666666666554
No 293
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.66 E-value=35 Score=34.80 Aligned_cols=270 Identities=11% Similarity=0.102 Sum_probs=137.3
Q ss_pred ccHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328 30 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 30 ~~i~~l~~~L~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
-.++.+.+.|- +.|+..|.+|=.+|..+..+ ++ .+..-.-++..++.+.-+.-|..+|..+..+...
T Consensus 5 aqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~s--pe---------clskCqlll~~gs~pYs~mlAst~L~Klvs~~t~- 72 (1082)
T KOG1410|consen 5 AQLESLCKDLYESTDPTARHRAEKALAELSES--PE---------CLSKCQLLLERGSYPYSQMLASTCLMKLVSRKTP- 72 (1082)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHccC--HH---------HHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCC-
Confidence 34566777775 68999999999999996543 22 2333344566666578888888999888774321
Q ss_pred hHHHHhCCCHHHHHHhhCCCC----HHHHHHHHHHHhhhhCCCc--hhHHHHHhcCChHHHHHHhcccccHhHHHHHHHH
Q 011328 109 TRVVIDHGAVPIFVRLLSSPT----DDVREQAVWALGNVAGDSP--KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWT 182 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~~L~~~~----~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~ 182 (488)
.......++-..++..+.... +-+....+..++.+..-.. ..++...=.+.+..+.+.+ +..+.+--.-++..
T Consensus 73 lpl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl-~~~~ve~~~igv~i 151 (1082)
T KOG1410|consen 73 LPLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFL-QMDNVEHCIIGVQI 151 (1082)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHh-ccCchHHHHHHHHH
Confidence 111111233456666776643 3344445555555543210 0011112223556666777 33333333444555
Q ss_pred HHHhhcCC-------CCCChh---------hhhchHHHHHHhhccC------C---hhHHHHHHHHHHHhc------cC-
Q 011328 183 LSNFCRGK-------PQPLFE---------QTRPALPALERLIHSN------D---DEVLTDACWALSYLS------DG- 230 (488)
Q Consensus 183 L~~l~~~~-------~~~~~~---------~~~~~~~~l~~ll~~~------~---~~v~~~al~~L~~l~------~~- 230 (488)
|..+...- |..... ....++..-..+++.. | ..+...++..-.+.. ..
T Consensus 152 LsqLvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~ 231 (1082)
T KOG1410|consen 152 LSQLVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSST 231 (1082)
T ss_pred HHHHHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhcccccccccc
Confidence 55554321 110000 0112222223333311 1 122222222221111 11
Q ss_pred ------------CchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC-----CchhhHHHhhCCChHHHHHHh
Q 011328 231 ------------TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG-----DDMQTQCIINHQALPCLLDLL 293 (488)
Q Consensus 231 ------------~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~~~~~~~L~~lL 293 (488)
+......+.+...++.+.++..+-.+.....++.||..+++- +...+...+. ..++-..+++
T Consensus 232 DEssed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~-~Lv~Gvk~il 310 (1082)
T KOG1410|consen 232 DESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQ-HLVEGVKRIL 310 (1082)
T ss_pred ccccccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHH
Confidence 111233456667888899999888888999999999999862 2222222221 3444455566
Q ss_pred cccc---hhhHHHHHHHHHHHHh
Q 011328 294 TQNY---KKSIKKEACWTISNIT 313 (488)
Q Consensus 294 ~~~~---~~~v~~~a~~~L~nl~ 313 (488)
.++. ++.--.+-|+.++.+-
T Consensus 311 ~np~~LsD~~nyHeFCRllaRlk 333 (1082)
T KOG1410|consen 311 ENPQGLSDPANYHEFCRLLARLK 333 (1082)
T ss_pred hCCcCCCCcchHHHHHHHHHHHH
Confidence 5442 3444455666666553
No 294
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=87.28 E-value=2.7 Score=33.50 Aligned_cols=80 Identities=16% Similarity=0.256 Sum_probs=61.5
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC-C-HHHHHHHHHHH
Q 011328 371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-N-TEIYEKAVKIL 448 (488)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~-~-~~v~~~a~~~l 448 (488)
++..|..-+.++++.++..++..|..+++.+... |...+.+.+.++.|..+...+ + +.|++++..++
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~-----------f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li 106 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSK-----------FHLEVASKEFLNELVKLIKPKYPLPLVKKRILELI 106 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH-----------HHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 4667778888899999999999999999875432 677778888888899886553 3 44999999999
Q ss_pred HHhcCCCCCCCCC
Q 011328 449 ETYWVEEDEDEPL 461 (488)
Q Consensus 449 ~~~~~~~~~~~~~ 461 (488)
........++...
T Consensus 107 ~~W~~~f~~~~~~ 119 (133)
T smart00288 107 QEWADAFKNDPDL 119 (133)
T ss_pred HHHHHHHcCCCCc
Confidence 8877766553333
No 295
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=87.24 E-value=24 Score=32.59 Aligned_cols=105 Identities=11% Similarity=0.200 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHhcCCHHHHH---------------------HHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhcc
Q 011328 300 SIKKEACWTISNITAGNVNQIQ---------------------AIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATS 356 (488)
Q Consensus 300 ~v~~~a~~~L~nl~~~~~~~~~---------------------~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~ 356 (488)
.+|..-++.+.+++.+...... .--+.|++..+++.+... +...|-.-+.|+-.+..
T Consensus 47 ~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLR 126 (303)
T PF12463_consen 47 ILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESELNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLR 126 (303)
T ss_pred HHHHHHHHHHHHHhccccchhHHHHHhcCccccccccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHc
Confidence 4677777888888763211110 001356788888887765 66788889999999999
Q ss_pred CCCH-HHHHHHHHCCChHHHHhhcCCC---CHHHHHHHHHHHHHHHHhhhhh
Q 011328 357 GGSN-EQIKFLVSQGCIKPLCDLLNCP---DPRIVTVCLEGLENILKAGEAE 404 (488)
Q Consensus 357 ~~~~-~~~~~l~~~~~i~~L~~ll~~~---~~~v~~~al~~L~~l~~~~~~~ 404 (488)
+.+. ....++.+.|+++.++..+-++ +..+.+.+...|+.+++.....
T Consensus 127 g~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK~n~~~ 178 (303)
T PF12463_consen 127 GATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIKFNRDA 178 (303)
T ss_pred CCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHCCCHHH
Confidence 8877 5566889999999999966644 3468888999999998876543
No 296
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.70 E-value=45 Score=35.07 Aligned_cols=277 Identities=12% Similarity=0.102 Sum_probs=159.4
Q ss_pred CcchhhhHHHHhhcCCCCChhhHHHHhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHH
Q 011328 1 MLWCWIDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIE 80 (488)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ 80 (488)
|..|.+.-++...+..+-+.-..+ ....+=+.|+++....+-.+...+.++-...+ .. .++++ .+=.|..
T Consensus 1 ~~~~~~~~~~~~~~~~~~e~s~~a------~~~~ldkGlr~~~t~eqpeavvr~~RLFek~P-fp--ifiNs-~llrLaD 70 (970)
T KOG1988|consen 1 SAACAMESSIKLEKSLESENSVNA------VLMELDKGLRSGKTSEQPEAVVRFPRLFEKYP-FP--IFINS-QLLRLAD 70 (970)
T ss_pred CCcchhhhHHhhhhccccccchhH------HHHHHhhcccccccccchHHHHHHHHHHhhCC-ch--hhhhH-HHHHHHH
Confidence 456777777776665554443232 23345567777777777778888887665442 21 33332 3345566
Q ss_pred hhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh-CCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCC
Q 011328 81 FLSRDDFPQLQFEAAWALTNIASGTSENTRVVID-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA 159 (488)
Q Consensus 81 lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 159 (488)
....++ ..+|...+++... +....+.+.. ...+..+....++.|+.-|..++.+++.+..--|+ .+.
T Consensus 71 aF~~Gn-~llRf~V~rv~~q----~g~hln~v~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lipE-------fn~ 138 (970)
T KOG1988|consen 71 AFPVGN-NLLRFAVLRVDQQ----SGKHLNKVLNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIPE-------FNQ 138 (970)
T ss_pred HhccCc-HHHHHHHHHHHhh----ccccchhhhhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhccc-------ccc
Confidence 677777 6788777776652 2222333322 12333334455678999999999999998654443 344
Q ss_pred hHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCCchhHHH
Q 011328 160 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQA 237 (488)
Q Consensus 160 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~v~~~al~~L~~l~~~~~~~~~~ 237 (488)
...++..-..+.++--.+.++.+..+++.... ....++...+-.++... .......++.++..+..+...
T Consensus 139 ~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk----~FA~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at~---- 210 (970)
T KOG1988|consen 139 VHHLIRISLDSHHELEVEAAEFAAACFAAQSK----DFACSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHATG---- 210 (970)
T ss_pred hhHHHHHHhcCccchhhHHHHHHHhhhhhhhh----hhHHHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhhh----
Confidence 55566554344444445667777777665431 11123333344444433 344556667777777644321
Q ss_pred HHHhCCHHHHHHhcCC-CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011328 238 VIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 314 (488)
Q Consensus 238 ~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 314 (488)
-.......+.++.. +..+....-+.++++++...-. .-.+-.+.+.+.++.+....++..+.|.+.+++.
T Consensus 211 --A~ra~~l~m~lv~~tps~d~~v~fL~stT~Lasrs~~-----ai~eq~d~l~q~~ked~~kivr~~vl~kl~~La~ 281 (970)
T KOG1988|consen 211 --ASRAFGLCMSLVSGTPSIDRVVAFLYSTTNLASRSLV-----AISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK 281 (970)
T ss_pred --hHHHHHHHHHHhcCCCcccceeeehhhhHHHHHHHHH-----HhHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence 11333455555543 4444455667777777753221 1235567788888865477778888888887764
No 297
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=86.45 E-value=19 Score=30.62 Aligned_cols=72 Identities=19% Similarity=0.252 Sum_probs=56.9
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchh
Q 011328 73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150 (488)
Q Consensus 73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (488)
..++.++++..+++ ..++..|+.++..+....--+-. ..+|.++.+..++++.++..|...+..+.+..+..
T Consensus 8 ryl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 8 RYLKNILELCLSSD-DSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 35677888888888 89999999999988873322211 24799999999999999999999999998765543
No 298
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.17 E-value=56 Score=36.46 Aligned_cols=269 Identities=13% Similarity=0.115 Sum_probs=118.8
Q ss_pred cHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC---ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHH
Q 011328 172 KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 248 (488)
Q Consensus 172 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~ 248 (488)
..+++.....++.++...........-..+++.+-...... ..++...+..++.-++.+.-.....-.-.++++.+.
T Consensus 855 ~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~ 934 (1610)
T KOG1848|consen 855 GVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLL 934 (1610)
T ss_pred cceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHH
Confidence 44566667777777766542111111122222222222212 345566666666665543211111111114455555
Q ss_pred HhcCC-CCcchHhHHHHHHhHhhcCCchhhHHHh----hCCChHHHHHHhcccchhhHHHHHHHHHH--HHhcCCHHHHH
Q 011328 249 ELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCII----NHQALPCLLDLLTQNYKKSIKKEACWTIS--NITAGNVNQIQ 321 (488)
Q Consensus 249 ~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~----~~~~~~~L~~lL~~~~~~~v~~~a~~~L~--nl~~~~~~~~~ 321 (488)
..-+. .+-.+...|+..++++...-.......- ....++.+.. ..+ ...+-.+++|.+. +++....+. +
T Consensus 935 ~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~s--s~~-~~~~l~e~lwi~ll~~L~~~~~ds-r 1010 (1610)
T KOG1848|consen 935 VFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYS--SMK-SKEILPEVLWIMLLVHLADLCEDS-R 1010 (1610)
T ss_pred HHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcc--ccc-chhhhhhHHHHHHHHHHHHHhccc-h
Confidence 55433 4566777787777777642111011111 1223333333 222 3345556665532 333211111 1
Q ss_pred HHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHH----hhcCCCCHHHHHHHHHHHHHH
Q 011328 322 AIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC----DLLNCPDPRIVTVCLEGLENI 397 (488)
Q Consensus 322 ~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~----~ll~~~~~~v~~~al~~L~~l 397 (488)
.-+.+|.+..+++++.++...+.. ++|..+-.- ....+.+..-...-- +.++....+.....+.++.++
T Consensus 1011 ~eVRngAvqtlfri~~Shg~~l~~-~aW~s~~w~------vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIakl 1083 (1610)
T KOG1848|consen 1011 AEVRNGAVQTLFRIFNSHGSKLGT-NAWASCCWL------VIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKL 1083 (1610)
T ss_pred HHHhhhHHHHHHHHHhhhcccCCh-hHHHHHHHH------HHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHH
Confidence 223456677777777665444332 222222110 001111100000000 001122234555666666666
Q ss_pred HHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 011328 398 LKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDED 458 (488)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 458 (488)
+...-+.-. ..|.+....++. ++.+.++..+.++++...|.+.+..+.-.--+.
T Consensus 1084 f~e~fk~ll-----nln~f~~vwe~l--l~flkrl~s~~s~e~slsai~~~qell~sii~~ 1137 (1610)
T KOG1848|consen 1084 FSENFKLLL-----NLNGFLDVWEEL--LQFLKRLHSDISPEISLSAIKALQELLFSIIEF 1137 (1610)
T ss_pred HHHHHHHHH-----hcccHHHHHHHH--HHHHHHHHhcCChHhHHHHHHHHHHHHHHHhhh
Confidence 543221110 122244444433 677788888899999999998887765543333
No 299
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=86.04 E-value=6.1 Score=37.46 Aligned_cols=217 Identities=19% Similarity=0.141 Sum_probs=109.7
Q ss_pred HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC-chhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc
Q 011328 70 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT-SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 148 (488)
Q Consensus 70 ~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~ 148 (488)
+...++..+..++..+.++......+.++..-...- .+ +...++..+.+-+.+..+.+|..-+..++.......
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~-----~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~ 93 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSE-----LPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESP 93 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcC-----CCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhcc
Confidence 334566777777776655777777777776655411 11 122346777777777777799998888888875111
Q ss_pred hhHHHHHhcCChHHHHHHhccc---ccHhHH---HHHHHHHHHhhcCC-CCCCh-------hhhhchHHHH--HHhhcc-
Q 011328 149 KCRDLVLSNGALMPLLAQFNEH---AKLSML---RNATWTLSNFCRGK-PQPLF-------EQTRPALPAL--ERLIHS- 211 (488)
Q Consensus 149 ~~~~~~~~~~~l~~L~~ll~~~---~~~~v~---~~a~~~L~~l~~~~-~~~~~-------~~~~~~~~~l--~~ll~~- 211 (488)
.....-.-...++.+++.+.+- +.+..+ ..++.++..+.... +.... .....=-+.+ -+++..
T Consensus 94 ~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl 173 (339)
T PF12074_consen 94 NSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL 173 (339)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc
Confidence 1011111123566676666321 111111 11222222211111 00000 0000000000 022222
Q ss_pred CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC--CcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHH
Q 011328 212 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCL 289 (488)
Q Consensus 212 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L 289 (488)
.+++-....++++..+..........-.....-..++.++-+. .+.+|..|+.++..+...++.. +...++..+
T Consensus 174 ~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l 249 (339)
T PF12074_consen 174 ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGL 249 (339)
T ss_pred CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHH
Confidence 3445555666666666644332211111224456777787776 7899999999999988877653 222345555
Q ss_pred HHHhcc
Q 011328 290 LDLLTQ 295 (488)
Q Consensus 290 ~~lL~~ 295 (488)
.+.+..
T Consensus 250 ~~~l~~ 255 (339)
T PF12074_consen 250 WKWLSS 255 (339)
T ss_pred HHHHHh
Confidence 555543
No 300
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=85.89 E-value=19 Score=37.80 Aligned_cols=309 Identities=15% Similarity=0.110 Sum_probs=152.4
Q ss_pred CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHH------HhC
Q 011328 42 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV------IDH 115 (488)
Q Consensus 42 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~------~~~ 115 (488)
+|..+...+++.++.++.. +.....+++.+++..|+..=.-+ +.-...-.||..+.. ....-+.+ +-.
T Consensus 365 ~d~~l~~~~~k~~~~l~~h--~kfa~~fv~~~gi~kll~vpr~s---~~~~g~s~cly~~~~-~q~~mervc~~p~~v~~ 438 (1516)
T KOG1832|consen 365 DDSPLLPDVMKLICALAAH--RKFAAMFVERRGILKLLAVPRVS---ETFYGLSSCLYTIGS-LQGIMERVCALPLVVIH 438 (1516)
T ss_pred ccccccHHHHHHHHHHHHh--hHHHHHHHHhhhhHHHhcCCCch---hhhhhHHHHHHHHhh-hhhHHHHHhhccHHHHH
Confidence 4556667788888887765 46677788888887776552221 222333345555554 22222222 122
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc-------c-----------ccHhHHH
Q 011328 116 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-------H-----------AKLSMLR 177 (488)
Q Consensus 116 g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-------~-----------~~~~v~~ 177 (488)
.++..-+.++.-....-+.++...++... .-...-+.+-....+..|+.++.. + .+.+...
T Consensus 439 ~vv~~~~~l~~cs~~~~~~~~~~ff~~~f-~frail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~ 517 (1516)
T KOG1832|consen 439 QVVKLAIELLDCSQDQARKNSALFFAAAF-VFRAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAF 517 (1516)
T ss_pred HHHHHHHHHHhcchhhccchHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhh
Confidence 34455555665543333333332222111 000112233334456666666521 1 1123334
Q ss_pred HHHHHHHHhhcCC-----CC-CChhhhhchHHHHHHhhccCC------hhHHHHHHHHHHHhccCCc-------hhHHHH
Q 011328 178 NATWTLSNFCRGK-----PQ-PLFEQTRPALPALERLIHSND------DEVLTDACWALSYLSDGTN-------DKIQAV 238 (488)
Q Consensus 178 ~a~~~L~~l~~~~-----~~-~~~~~~~~~~~~l~~ll~~~~------~~v~~~al~~L~~l~~~~~-------~~~~~~ 238 (488)
..|.+|....+.. +. .......+..+..++-+..+. ....+..++-+-.+....+ ...+.+
T Consensus 518 htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenf 597 (1516)
T KOG1832|consen 518 HTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENF 597 (1516)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHH
Confidence 5555555433221 00 011111122222222222111 1223333333333322222 223456
Q ss_pred HHhCCHHHHHHhcCCC--------CcchHhHHHHHHhHhhcCCchhhHHHhh--------CCChHHHHHHhcc---cchh
Q 011328 239 IEAGVCPRLVELLRHP--------SPSVLIPALRTVGNIVTGDDMQTQCIIN--------HQALPCLLDLLTQ---NYKK 299 (488)
Q Consensus 239 ~~~~~l~~L~~lL~~~--------~~~v~~~a~~~L~~l~~~~~~~~~~~~~--------~~~~~~L~~lL~~---~~~~ 299 (488)
.+.+++..++.+...+ ..+....|+.+|.-+..- +.....+.. ..++..++..-.. ..++
T Consensus 598 lkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dp 676 (1516)
T KOG1832|consen 598 LKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDP 676 (1516)
T ss_pred HHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeecccccccccCH
Confidence 6777888887776432 234556677777666553 333333321 1233444333221 1268
Q ss_pred hHHHHHHHHHHHHhcCCHHHH-----------------------------------HHHHHcCChHHHHHHHhcCC----
Q 011328 300 SIKKEACWTISNITAGNVNQI-----------------------------------QAIIEAGIIGPLVNLLLNAE---- 340 (488)
Q Consensus 300 ~v~~~a~~~L~nl~~~~~~~~-----------------------------------~~l~~~~~l~~L~~ll~~~~---- 340 (488)
+++..|+.+|.|+....++.+ ..+..++++..|+++++...
T Consensus 677 ei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~ 756 (1516)
T KOG1832|consen 677 EIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTT 756 (1516)
T ss_pred HHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCc
Confidence 899999999999876432211 11223578999999998763
Q ss_pred -hhHHHHHHHHHHHhccCC
Q 011328 341 -FEIKKEAAWAISNATSGG 358 (488)
Q Consensus 341 -~~v~~~a~~aL~~l~~~~ 358 (488)
..+|.-|+.+|.-++...
T Consensus 757 aD~IRalAc~~L~GLaR~~ 775 (1516)
T KOG1832|consen 757 ADCIRALACRVLLGLARDD 775 (1516)
T ss_pred HHHHHHHHHHHHhccccCc
Confidence 358899999999999865
No 301
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.80 E-value=76 Score=36.80 Aligned_cols=273 Identities=15% Similarity=0.138 Sum_probs=145.0
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC-CCCChh
Q 011328 118 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFE 196 (488)
Q Consensus 118 i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~ 196 (488)
+..+...+...++..+-.+..+++.++...+.. ..+ ....+..+..+....|+-.|.--..++..+-++. ......
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~-~f~--a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA-PFV--ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc-chH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence 444555566678888888888888887544321 111 1245667777756666666666667777777665 344445
Q ss_pred hhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCc---chHhHHHH--------
Q 011328 197 QTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP---SVLIPALR-------- 264 (488)
Q Consensus 197 ~~~~~~~~l~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~---~v~~~a~~-------- 264 (488)
.....+..+..+.+++ .+.|+..++.++..+...........++ ..+..+..++.+..+ ++...--+
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence 5566677788887766 5699999999999988665544443333 334444455443211 12211111
Q ss_pred -----HHhHhhcCCch-hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc
Q 011328 265 -----TVGNIVTGDDM-QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN 338 (488)
Q Consensus 265 -----~L~~l~~~~~~-~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~ 338 (488)
+++.=...+.. .....+....+-...-++.++ ++.++.++..++.++-.-.+.... -.-+++.++.++.+
T Consensus 1034 ~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLSS 1109 (2067)
T ss_pred HHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhcc
Confidence 11111111111 000011111222222233444 778888888888877653222111 11256667777766
Q ss_pred CChhHHHHHHHHHHHhccCCCHH---HHHHHH---------------HCCChHHHHhhcC-CCCHHHHHHHHHHHHHHH
Q 011328 339 AEFEIKKEAAWAISNATSGGSNE---QIKFLV---------------SQGCIKPLCDLLN-CPDPRIVTVCLEGLENIL 398 (488)
Q Consensus 339 ~~~~v~~~a~~aL~~l~~~~~~~---~~~~l~---------------~~~~i~~L~~ll~-~~~~~v~~~al~~L~~l~ 398 (488)
...-.|.....++..+......+ ....+. +.|+--.+..+++ ..|.+..+.....+.+++
T Consensus 1110 ~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~~ 1188 (2067)
T KOG1822|consen 1110 SYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRML 1188 (2067)
T ss_pred hhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 65445555555555554322111 111111 3444555555665 345667777777777743
No 302
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=85.79 E-value=27 Score=32.50 Aligned_cols=172 Identities=10% Similarity=0.065 Sum_probs=94.7
Q ss_pred CcchHhHHHHHHhHhhcCCchhhHHHhhC-----------CChHHHHHHhc------ccchhhHHHHHHHHHHHHhcCCH
Q 011328 255 SPSVLIPALRTVGNIVTGDDMQTQCIINH-----------QALPCLLDLLT------QNYKKSIKKEACWTISNITAGNV 317 (488)
Q Consensus 255 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----------~~~~~L~~lL~------~~~~~~v~~~a~~~L~nl~~~~~ 317 (488)
.-.+|.+|+.++.....++++....+++. .....++..|- +. ++---..|+.++..+..+++
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~-dpy~~wfAa~il~hll~dn~ 129 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSL-DPYRCWFAAVILMHLLRDNP 129 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS--HHHHHHHHHHHHHHHTT-H
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccC-CHHHHHHHHHHHHHHHhcCH
Confidence 35789999999999999888776665521 11223444443 22 33334578888888888777
Q ss_pred HHHHHHHHc------------CChHHHHHHHhc-----CChhHHHHHHHHHHHhccCCCHHHHHHHHHC-CChHHHHhhc
Q 011328 318 NQIQAIIEA------------GIIGPLVNLLLN-----AEFEIKKEAAWAISNATSGGSNEQIKFLVSQ-GCIKPLCDLL 379 (488)
Q Consensus 318 ~~~~~l~~~------------~~l~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~i~~L~~ll 379 (488)
+.+.....- ..+..+..+|.. .++.++..-+..|...... ++.....+... ..+..|++..
T Consensus 130 ~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e-~p~AV~~FL~~~s~l~~Li~~~ 208 (312)
T PF04869_consen 130 EAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFE-CPDAVNDFLSEGSNLQSLIEFS 208 (312)
T ss_dssp HHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT--HHHHHHHHCSTTHHHHHHHHH
T ss_pred HHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhC-CHHHHHHHHcCcchHHHHHHHh
Confidence 766555421 135555555544 2666777777777777665 45666666554 5788888864
Q ss_pred CC---CCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHH-HhhccHHHHHHh
Q 011328 380 NC---PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAI-DDAEGLEKIENL 432 (488)
Q Consensus 380 ~~---~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l-~~~g~~~~L~~l 432 (488)
.. .+.-++-.+.-.|+-......+.... ....+...+ .+.|.-..+.++
T Consensus 209 ~~~~~~~~~VqGL~A~LLGicyef~~~~s~~----~R~~l~~ll~~riG~d~y~~kl 261 (312)
T PF04869_consen 209 NQSSSEDVLVQGLCAFLLGICYEFSTKDSPI----PRATLHPLLTKRIGRDNYFSKL 261 (312)
T ss_dssp S--TCCCHHHHHHHHHHHHHHHHT-S-SCCC-----HHHHHHHHHHHT-HHHHHHHH
T ss_pred hcCCCCcchHHHHHHHHHHHHHHhcCCCCCc----CHHHHHHHHHHhcCHHHHHHHH
Confidence 42 33445555666666666655333211 112244445 456654444444
No 303
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=85.63 E-value=2.8 Score=36.60 Aligned_cols=85 Identities=20% Similarity=0.238 Sum_probs=62.3
Q ss_pred chHhHHHHHHhHhhcCCchhhHHHhh-------CCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHH-HHcCC
Q 011328 257 SVLIPALRTVGNIVTGDDMQTQCIIN-------HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI-IEAGI 328 (488)
Q Consensus 257 ~v~~~a~~~L~~l~~~~~~~~~~~~~-------~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~~~ 328 (488)
.-+..|+.+|+.++... .+...++. ..++..|.+++....+...|+.|+..|.+++.++......+ .+.+.
T Consensus 139 SPqrlaLEaLcKLsV~e-~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIE-NNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhheec-cCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 46788999999998632 23232222 24567788888777688999999999999999766655444 35788
Q ss_pred hHHHHHHHhcCChh
Q 011328 329 IGPLVNLLLNAEFE 342 (488)
Q Consensus 329 l~~L~~ll~~~~~~ 342 (488)
+..|+.++.+.+..
T Consensus 218 i~~Li~FiE~a~~~ 231 (257)
T PF12031_consen 218 ISHLIAFIEDAEQN 231 (257)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999886443
No 304
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=85.31 E-value=10 Score=28.25 Aligned_cols=93 Identities=13% Similarity=0.165 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhccCCCccHHHHH-HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHH
Q 011328 45 NIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR 123 (488)
Q Consensus 45 ~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 123 (488)
++|.+|+..+..=+... --....+. ....+..|++.+..+. ...+..++..+..++. ++.....+.+-|....|.+
T Consensus 2 EIR~RAL~~I~~Kl~~~-Li~~~dl~~~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~k 78 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHG-LISEEDLVKERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSK 78 (98)
T ss_pred hHHHHHHHHHHHHHHhc-cccHHHHccHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHH
Confidence 46666665544333322 22223333 5567888888888888 5688899999999998 7888888888898888777
Q ss_pred hhCCCCHHHHHHHHHHH
Q 011328 124 LLSSPTDDVREQAVWAL 140 (488)
Q Consensus 124 ~L~~~~~~v~~~a~~~L 140 (488)
+-..-++..+...-.++
T Consensus 79 lr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 79 LRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHhcCCHHHHHHHHHHH
Confidence 66666666665544443
No 305
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=85.13 E-value=10 Score=35.63 Aligned_cols=72 Identities=8% Similarity=0.067 Sum_probs=60.2
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHH
Q 011328 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILK 399 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~L~~l~~ 399 (488)
++..+.+-+...++.|...|+..+..++.++....+..+...++...|..++. ..++.+++..-..+....+
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 56778888999999999999999999999998888899999999999999999 6677777666555555444
No 306
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=84.83 E-value=10 Score=41.23 Aligned_cols=236 Identities=19% Similarity=0.210 Sum_probs=131.7
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHh--------hcCCCChhHHHHHHHHHHHh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEF--------LSRDDFPQLQFEAAWALTNI 101 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~l--------L~~~~~~~v~~~a~~~L~~l 101 (488)
+.+..|++.+.++...+|.-++.+++.++............+..++..+.-+ ..++--..+++.++++|+.+
T Consensus 77 s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~ 156 (1549)
T KOG0392|consen 77 SFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAY 156 (1549)
T ss_pred HHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHH
Confidence 4566788889999999999999999999876532222222222222222111 11111146899999999988
Q ss_pred cCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHh---cCChHHHHHHhcccccHhHHHH
Q 011328 102 ASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS---NGALMPLLAQFNEHAKLSMLRN 178 (488)
Q Consensus 102 ~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~---~~~l~~L~~ll~~~~~~~v~~~ 178 (488)
.....+... ...++.+.+++..+..+++...+..+..... .+..... ..++...+..+ .+++..++..
T Consensus 157 l~~~~~s~~----~~~~~il~q~~~q~~w~ir~Ggll~iky~~a----ir~d~l~~~~~~vl~~~i~~L-~ds~ddv~~~ 227 (1549)
T KOG0392|consen 157 LKHMDESLI----KETLDILLQMLRQPNWEIRHGGLLGIKYNVA----IRQDLLFQLLNLVLDFVIEGL-EDSDDDVRSV 227 (1549)
T ss_pred HHhhhhHhh----HHHHHHHHHHHcCcchhheechHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhh-hhcchHHHHH
Confidence 873222111 1236777788887777777666655544322 1111111 12344555666 6677788888
Q ss_pred HHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCCh--hHHHHHHHHHHHhccCCc--hh-HHHHHHhCCHHHHHHhcCC
Q 011328 179 ATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD--EVLTDACWALSYLSDGTN--DK-IQAVIEAGVCPRLVELLRH 253 (488)
Q Consensus 179 a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~v~~~al~~L~~l~~~~~--~~-~~~~~~~~~l~~L~~lL~~ 253 (488)
|+..+.-............+..++..+...+..-+. .-.......+..++.... +. .+.-.+.++++.+...+.+
T Consensus 228 aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~ 307 (1549)
T KOG0392|consen 228 AAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRH 307 (1549)
T ss_pred HHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHH
Confidence 888877766554333333334444444444332221 011111112222222220 00 1111224788888888888
Q ss_pred CCcchHhHHHHHHhHhhcCCc
Q 011328 254 PSPSVLIPALRTVGNIVTGDD 274 (488)
Q Consensus 254 ~~~~v~~~a~~~L~~l~~~~~ 274 (488)
.-..++..++..+..+....+
T Consensus 308 ~i~sv~~a~l~~l~~lle~~~ 328 (1549)
T KOG0392|consen 308 TISSVRRAALETLAMLLEADD 328 (1549)
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 877889999999888877543
No 307
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=84.68 E-value=19 Score=28.99 Aligned_cols=99 Identities=17% Similarity=0.231 Sum_probs=66.3
Q ss_pred CChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHH
Q 011328 339 AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFA 417 (488)
Q Consensus 339 ~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~ 417 (488)
+|+..-...+..+.. -..+.. .++..|..-+. +.++.++..++..|..+++.+... |.
T Consensus 17 ~dw~~ileicD~In~-~~~~~k---------~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~-----------fh 75 (141)
T cd03565 17 EDWGLNMEICDIINE-TEDGPK---------DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHR-----------FH 75 (141)
T ss_pred cCHHHHHHHHHHHhC-CCCcHH---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHH-----------HH
Confidence 355655555655543 222211 24555556555 468888899999999998876543 56
Q ss_pred HHHHhhccHHH-HHHhhcC---CCHHHHHHHHHHHHHhcCCCCCC
Q 011328 418 QAIDDAEGLEK-IENLQSH---DNTEIYEKAVKILETYWVEEDED 458 (488)
Q Consensus 418 ~~l~~~g~~~~-L~~l~~~---~~~~v~~~a~~~l~~~~~~~~~~ 458 (488)
..+...+.++. |.++... .+.+|+.+...++......-.++
T Consensus 76 ~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~ 120 (141)
T cd03565 76 VLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGS 120 (141)
T ss_pred HHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 66777777876 7887653 35689999999998887666553
No 308
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=84.67 E-value=18 Score=36.45 Aligned_cols=172 Identities=13% Similarity=0.021 Sum_probs=102.7
Q ss_pred ccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc--c---------CChhHHHHHHHHHHHhccCCchhHHHHH
Q 011328 171 AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--S---------NDDEVLTDACWALSYLSDGTNDKIQAVI 239 (488)
Q Consensus 171 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~--~---------~~~~v~~~al~~L~~l~~~~~~~~~~~~ 239 (488)
++.++...|-..|..+... .....++..|..+.. . .++.++...+..|..-.... -.
T Consensus 249 ~~~~V~~~ae~~LKr~~~~------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa------~~ 316 (501)
T PF13001_consen 249 SNSSVSDRAEDLLKRLSVS------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAA------TS 316 (501)
T ss_pred CcchHHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHH------hC
Confidence 4456666677777666554 233456666666655 2 35677777776666421100 01
Q ss_pred HhCCHHHHHHhcCCC--CcchHhHHHHHH---hHhhcCCchhhHHHhhCCChHHHHHHhc-------ccchhhHHHHHHH
Q 011328 240 EAGVCPRLVELLRHP--SPSVLIPALRTV---GNIVTGDDMQTQCIINHQALPCLLDLLT-------QNYKKSIKKEACW 307 (488)
Q Consensus 240 ~~~~l~~L~~lL~~~--~~~v~~~a~~~L---~~l~~~~~~~~~~~~~~~~~~~L~~lL~-------~~~~~~v~~~a~~ 307 (488)
....+..+...+.+. +..++..++..+ .....+.....-..+...+...+.+.++ ...+...|..+..
T Consensus 317 ~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe 396 (501)
T PF13001_consen 317 FPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYE 396 (501)
T ss_pred CccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHH
Confidence 113444455556555 567777777777 5555444333222222223333333332 1226788999999
Q ss_pred HHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011328 308 TISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 308 ~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
+|+.++...+..... +.+++..|++-|..++++++...-.||..++.
T Consensus 397 ~lG~L~~~~p~l~~~--d~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 397 TLGLLAKRAPSLFSK--DLSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHHHccCcccccc--cHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 999999876654311 23478888888888889999888888888874
No 309
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=84.23 E-value=32 Score=31.14 Aligned_cols=165 Identities=19% Similarity=0.173 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhhhhCCC-------chhHHHHHhcCChHHHHHHhcccc---cHhHHHHHHHHHHHhhcCCCCCChhhhh
Q 011328 130 DDVREQAVWALGNVAGDS-------PKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPLFEQTR 199 (488)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~-------~~~~~~~~~~~~l~~L~~ll~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 199 (488)
+...+.++..|..++... .+.|-.+.-...++.++..+.+.. .......++..|..+|......
T Consensus 76 s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~------ 149 (262)
T PF14225_consen 76 SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLP------ 149 (262)
T ss_pred CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCc------
Confidence 445556677777776432 111222222234566666663322 0234456778888888543211
Q ss_pred chHHHHHHhhc----cCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch
Q 011328 200 PALPALERLIH----SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 275 (488)
Q Consensus 200 ~~~~~l~~ll~----~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 275 (488)
-+..++.... .+..+....++..|+.-.. ++. +...+..++.+|.++-+.++..++.+|..+....+.
T Consensus 150 -~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~ 221 (262)
T PF14225_consen 150 -NLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PDH-----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDM 221 (262)
T ss_pred -cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--chh-----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccC
Confidence 1222222222 1233444445544443211 111 225567788999988889999999999999876554
Q ss_pred hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011328 276 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 314 (488)
Q Consensus 276 ~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 314 (488)
... ...+++..+.++++++ ...+|+.++-+...
T Consensus 222 ~~~--~~~dlispllrlL~t~----~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 222 RSP--HGADLISPLLRLLQTD----LWMEALEVLDEIVT 254 (262)
T ss_pred CCC--cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence 322 5557889999999877 34567766666554
No 310
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.53 E-value=72 Score=34.66 Aligned_cols=403 Identities=15% Similarity=0.125 Sum_probs=206.3
Q ss_pred hcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC--CCchhhHHHHhCC
Q 011328 39 VWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS--GTSENTRVVIDHG 116 (488)
Q Consensus 39 L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g 116 (488)
|++++.+.+...+..+.++-+.. .++....-+.-.+|.++.-+..-. ..+|...+.++.--.. ..-..++
T Consensus 476 LkaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtvvncvPeqE------ 547 (2799)
T KOG1788|consen 476 LKAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTVVNCVPEQE------ 547 (2799)
T ss_pred HHhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhhhccCcHHH------
Confidence 35778888888888888887665 555555556677888887777655 4666665554432211 0111111
Q ss_pred CHHHHHHhhCCC-CHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc---cHhHHHHHHHHHHHhhcCCCC
Q 011328 117 AVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQ 192 (488)
Q Consensus 117 ~i~~L~~~L~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~---~~~v~~~a~~~L~~l~~~~~~ 192 (488)
+-.|+-+|+.+ +..+....+.....+...+...++.+.+-|.++.|-..++++. .++ +.. .........+.
T Consensus 548 -LlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpd-qys---gvsehydrnps 622 (2799)
T KOG1788|consen 548 -LLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPD-QYS---GVSEHYDRNPS 622 (2799)
T ss_pred -HHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcc-hhh---hHHHHhhcCCC
Confidence 23445566653 4555666666666666666777888888888888877774321 000 000 01111111110
Q ss_pred C-Ch---hhhhchHHHHHHhhccCC--hhH------HHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHh
Q 011328 193 P-LF---EQTRPALPALERLIHSND--DEV------LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 260 (488)
Q Consensus 193 ~-~~---~~~~~~~~~l~~ll~~~~--~~v------~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~ 260 (488)
. .+ .-....+-.--++++++. ..+ ....-.+|..+..++.++...+.+..++..++.++- +++.|.
T Consensus 623 s~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfli--ndehRS 700 (2799)
T KOG1788|consen 623 SPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLI--NDEHRS 700 (2799)
T ss_pred CchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeee--chHHHH
Confidence 0 00 000011100112222211 111 111234566666666666677777788888888874 455788
Q ss_pred HHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccc-----------hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCCh
Q 011328 261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-----------KKSIKKEACWTISNITAGNVNQIQAIIEAGII 329 (488)
Q Consensus 261 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~-----------~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l 329 (488)
..++++..+....+.+.. ..-+..+++.|+++. ....+...+.+++.+..-+...+..+-+.+.+
T Consensus 701 slLrivscLitvdpkqvh----hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGF 776 (2799)
T KOG1788|consen 701 SLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGF 776 (2799)
T ss_pred HHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccH
Confidence 888888888776554322 123445666665521 23345566677777765445555566677777
Q ss_pred HHHHHHHhcC----------ChhHHHHHHHHHH---HhccCCCHHHH-------------HHHHHCCC---------hHH
Q 011328 330 GPLVNLLLNA----------EFEIKKEAAWAIS---NATSGGSNEQI-------------KFLVSQGC---------IKP 374 (488)
Q Consensus 330 ~~L~~ll~~~----------~~~v~~~a~~aL~---~l~~~~~~~~~-------------~~l~~~~~---------i~~ 374 (488)
..|...|..- |.-+-.+-...|- .++...++.++ ..+.+.|+ +..
T Consensus 777 slLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viql 856 (2799)
T KOG1788|consen 777 SLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQL 856 (2799)
T ss_pred HHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHH
Confidence 7777766421 1111111111211 11111112222 22223331 111
Q ss_pred HHhh-cCCCCHHHHHHHHHHHHHHHHhhhhhh-ccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011328 375 LCDL-LNCPDPRIVTVCLEGLENILKAGEAEK-NMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 452 (488)
Q Consensus 375 L~~l-l~~~~~~v~~~al~~L~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~ 452 (488)
|.++ ++.-.+.....-..+...+++.++... ..-..+..|+..+.+=.+|..+.|.+..-...++++..-.++++...
T Consensus 857 llElalevlvppfLtSEsaAcaeVfelednifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSla 936 (2799)
T KOG1788|consen 857 LLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLA 936 (2799)
T ss_pred HHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHh
Confidence 1110 000000001111122333333332211 11123455666777777899999988877777898888888888887
Q ss_pred CCCCCCCC
Q 011328 453 VEEDEDEP 460 (488)
Q Consensus 453 ~~~~~~~~ 460 (488)
+....-.|
T Consensus 937 Raspfnae 944 (2799)
T KOG1788|consen 937 RASPFNAE 944 (2799)
T ss_pred hcCCCchh
Confidence 76655444
No 311
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=83.47 E-value=29 Score=36.92 Aligned_cols=143 Identities=10% Similarity=0.134 Sum_probs=84.7
Q ss_pred HHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHH
Q 011328 245 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 324 (488)
Q Consensus 245 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 324 (488)
..+...+.++++......+.++.+++.-..-..+. ...-.+.-..-.... -..+......+|..++.-+++....++
T Consensus 444 ~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~-~~~~~~~~~~il~rls~~~~~~L~~l~ 520 (727)
T PF12726_consen 444 KALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKS-LGQITDLISQILERLSDFDPSHLKELL 520 (727)
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHH-HHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 33444444455555555566665555421111110 111222222233333 345667788889999887788887777
Q ss_pred H-cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011328 325 E-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 401 (488)
Q Consensus 325 ~-~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 401 (488)
. .+....++.++-+++.++.+.|...|.......+ -.+.+..+++..-.........++.++.+..
T Consensus 521 ~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~-----------R~e~i~~ll~~~~~~tL~ai~~~l~~~~~~~ 587 (727)
T PF12726_consen 521 SDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDG-----------RLEAIQALLQSNFSPTLSAINWSLRQLTKLK 587 (727)
T ss_pred cCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCc-----------HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 4 6789999999999999999999999999875432 2344445555444444455555666655443
No 312
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=83.28 E-value=4.5 Score=35.40 Aligned_cols=79 Identities=24% Similarity=0.263 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHhcCCCchhhHHHHhCCCH-------HHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchh-HHHHHhcCC
Q 011328 89 QLQFEAAWALTNIASGTSENTRVVIDHGAV-------PIFVRLLSS-PTDDVREQAVWALGNVAGDSPKC-RDLVLSNGA 159 (488)
Q Consensus 89 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i-------~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~ 159 (488)
.=|..|+.+|++++- .+.+.+.+...+-. ..|.+++.. +++-.|+.|+..|.+++..+... +....+.+.
T Consensus 139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 358889999999997 55666666555433 444455543 78999999999999999877554 455567788
Q ss_pred hHHHHHHhc
Q 011328 160 LMPLLAQFN 168 (488)
Q Consensus 160 l~~L~~ll~ 168 (488)
+..|+.++.
T Consensus 218 i~~Li~FiE 226 (257)
T PF12031_consen 218 ISHLIAFIE 226 (257)
T ss_pred HHHHHHHHH
Confidence 999999993
No 313
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=83.21 E-value=27 Score=29.48 Aligned_cols=74 Identities=9% Similarity=0.074 Sum_probs=54.9
Q ss_pred CCHHHHHHhcCCCCcchHhHHHHHHhHhhcC-CchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCH
Q 011328 242 GVCPRLVELLRHPSPSVLIPALRTVGNIVTG-DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 317 (488)
Q Consensus 242 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 317 (488)
-.++.+++-|...+...+..|...+..+... ..+..-.++. .++..+...|.+. ++++...++.+|..++..++
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlP-qLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLP-QLIIPLKRALNTR-DPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhh
Confidence 4677788888887777777777777777665 3433333333 6778888888999 99999999999999965433
No 314
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=82.70 E-value=1.6 Score=35.18 Aligned_cols=74 Identities=16% Similarity=0.114 Sum_probs=57.7
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChh---HHHHHHHHHHHhcC
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ---LQFEAAWALTNIAS 103 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~---v~~~a~~~L~~l~~ 103 (488)
..+..|.+.|++.++.++..|+..|-.+..+-+......+....++..|.+++.+..... |+..++..+...+.
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 567788899999999999999999999887654445566667778999999887654344 88888887776654
No 315
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=82.48 E-value=4.4 Score=32.64 Aligned_cols=76 Identities=17% Similarity=0.284 Sum_probs=57.8
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc-CCCHH---HHHHHHH
Q 011328 371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS-HDNTE---IYEKAVK 446 (488)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~-~~~~~---v~~~a~~ 446 (488)
++..|..-|.++++.++..|+..|..+++.+... |...+.....++.|..+.. +.... |++++..
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~-----------f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ 111 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPR-----------FHREVASKEFLDELVKLIKSKKTDPETPVKEKILE 111 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHH-----------HHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHH-----------HHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHH
Confidence 4677778888899999999999999999876432 6677777778888888753 44444 8999999
Q ss_pred HHHHhcCCCCC
Q 011328 447 ILETYWVEEDE 457 (488)
Q Consensus 447 ~l~~~~~~~~~ 457 (488)
++...-.....
T Consensus 112 ll~~W~~~f~~ 122 (140)
T PF00790_consen 112 LLQEWAEAFKS 122 (140)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHHCC
Confidence 88766555533
No 316
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=82.32 E-value=73 Score=39.39 Aligned_cols=318 Identities=13% Similarity=0.077 Sum_probs=150.0
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCC------Cc--hhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhh
Q 011328 73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASG------TS--ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144 (488)
Q Consensus 73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~------~~--~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~ 144 (488)
-.++.|+..+...+ ..+...+..++..+... ++ ..+..+ -.++++.+.++..++...-+...+..|..+.
T Consensus 984 i~ldal~~~l~~~~-~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi-~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~ 1061 (3550)
T KOG0889|consen 984 TFLDALVESLSHEN-SEMRPAGVRALKVIFSTSTLILGSPERAFKLPM-FEYLLEKLCHLCYDSTWYAKDGGVNGIKCLI 1061 (3550)
T ss_pred HHHHHHHHHHhccc-hhhhhhHHHHHHHHHHHHHHhhcCcchhhccch-HHHHHHHHHHHhccHhHHHHcCCCceeeeeh
Confidence 35677777777776 67776666666555320 11 111111 1234555555555555555555555555555
Q ss_pred CCCchhHHHHH--hcCChHHHHHHhcccc------cHhHHHHHHHHHHHhhcCC---CCCChhhhhchHHHHHHhhccCC
Q 011328 145 GDSPKCRDLVL--SNGALMPLLAQFNEHA------KLSMLRNATWTLSNFCRGK---PQPLFEQTRPALPALERLIHSND 213 (488)
Q Consensus 145 ~~~~~~~~~~~--~~~~l~~L~~ll~~~~------~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~~~~~l~~ll~~~~ 213 (488)
.+.+. ..+. ....+..++..+.+.. ........+.-+...+... +........+++..++.-+.+++
T Consensus 1062 ~~~~~--~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN 1139 (3550)
T KOG0889|consen 1062 ESMPS--LWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPN 1139 (3550)
T ss_pred hhchH--HHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCc
Confidence 54441 1111 1223444554442211 1112222222222222112 23333445678888888888999
Q ss_pred hhHHHHHHHHHHHhccCCchhHHHHHHh--CC--HHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh-------hHHHh-
Q 011328 214 DEVLTDACWALSYLSDGTNDKIQAVIEA--GV--CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-------TQCII- 281 (488)
Q Consensus 214 ~~v~~~al~~L~~l~~~~~~~~~~~~~~--~~--l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~~~- 281 (488)
..|++.+..+|.+++.........+.+. +. ++.+..-+....-..+...+.++..++.-.+.. .....
T Consensus 1140 ~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~ 1219 (3550)
T KOG0889|consen 1140 SDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRF 1219 (3550)
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHH
Confidence 9999999999999986553222212211 11 111111112222223333333333333222211 10000
Q ss_pred --------hCCChHHHHHHhcccc---hhhHHHHHHHHHHHHhcCCHHHH--HHHHHcCChHHHHHHHhcCChhHHHHHH
Q 011328 282 --------NHQALPCLLDLLTQNY---KKSIKKEACWTISNITAGNVNQI--QAIIEAGIIGPLVNLLLNAEFEIKKEAA 348 (488)
Q Consensus 282 --------~~~~~~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~--~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 348 (488)
+..... +.+....+. ....|..+..+++......+-.. ..-...+++..++..+....+++...+.
T Consensus 1220 ~~~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~ 1298 (3550)
T KOG0889|consen 1220 LIALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVAL 1298 (3550)
T ss_pred HHHhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHH
Confidence 001111 222221110 12235566666665554222111 1112345788888888888999999999
Q ss_pred HHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 011328 349 WAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL 398 (488)
Q Consensus 349 ~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~ 398 (488)
.++.+.... +...-..+++.+.-+.|.++-+..+ .....+..++.+.
T Consensus 1299 ~~l~~v~~~-~~~~~ke~lq~~lrplL~~l~d~~~--lsv~~l~~ls~l~ 1345 (3550)
T KOG0889|consen 1299 EGLRKVLAQ-DVKLPKELLQSHLRPLLMNLSDHNN--LSVPGLEGLSRLL 1345 (3550)
T ss_pred HHHHhhhhc-cccccHHHHHhhHHHHHHhhhHhhh--hhHHHHHHHHHHH
Confidence 999888654 2333444555455566666555443 2334444444443
No 317
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=82.27 E-value=48 Score=31.70 Aligned_cols=154 Identities=16% Similarity=0.056 Sum_probs=91.9
Q ss_pred HHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc----------cCChhHHHHHHHHHHHhccCC
Q 011328 162 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----------SNDDEVLTDACWALSYLSDGT 231 (488)
Q Consensus 162 ~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~----------~~~~~v~~~al~~L~~l~~~~ 231 (488)
.++..+.+..-...+...+.++.-|+++............++.++.+-+ ..+..+...++.||+|+..++
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S 128 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS 128 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence 4555553443345556677777777776644444444455555555532 234688999999999999888
Q ss_pred chhHHHHHHhCCHHHHHHhcCC----CC-cchHhHHHHHHhHhhcCCch-hhHHHhhCCChHHHHHHhccc---------
Q 011328 232 NDKIQAVIEAGVCPRLVELLRH----PS-PSVLIPALRTVGNIVTGDDM-QTQCIINHQALPCLLDLLTQN--------- 296 (488)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~lL~~----~~-~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~L~~lL~~~--------- 296 (488)
+...+...+......+.+.+.. +. ..+...-++.|.-+..-... ..+.+.+.++++.+.+++.++
T Consensus 129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~ 208 (532)
T KOG4464|consen 129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINV 208 (532)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCC
Confidence 8777777777666666665532 11 12222333333333332223 334445778888888888542
Q ss_pred -----chhhHHHHHHHHHHHHhcC
Q 011328 297 -----YKKSIKKEACWTISNITAG 315 (488)
Q Consensus 297 -----~~~~v~~~a~~~L~nl~~~ 315 (488)
++...-.+++.++.|+..+
T Consensus 209 ~~l~pqe~n~a~EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 209 PPLNPQETNRACEALKVFFNVTCD 232 (532)
T ss_pred CCCCHHHHHHHHHHHHHHhheeec
Confidence 1223456778888888763
No 318
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=81.86 E-value=14 Score=33.85 Aligned_cols=74 Identities=22% Similarity=0.228 Sum_probs=55.9
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC------------CCCHHHHHHHHHHHH
Q 011328 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN------------CPDPRIVTVCLEGLE 395 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~------------~~~~~v~~~al~~L~ 395 (488)
++|.++.++.+.++.+|..++.+|..+........-..+.+.|..+.+.+.+. .+...+...+..++.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 79999999999999999999999999998664443334667777666666443 234567788888888
Q ss_pred HHHHhh
Q 011328 396 NILKAG 401 (488)
Q Consensus 396 ~l~~~~ 401 (488)
.++...
T Consensus 200 ~L~~~~ 205 (282)
T PF10521_consen 200 SLLKTQ 205 (282)
T ss_pred HHHHhh
Confidence 887653
No 319
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=80.46 E-value=34 Score=28.86 Aligned_cols=71 Identities=18% Similarity=0.198 Sum_probs=53.5
Q ss_pred CChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011328 284 QALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 284 ~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
..++.+.+-|... +...+--|...+..+... ..+.+-.++. .++..+-+.|.+.++++...++.+|..++.
T Consensus 38 ~~Lpif~dGL~Et-~~Py~flA~~g~~dll~~~~~~kilPvlP-qLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 38 HYLPIFFDGLRET-EHPYRFLARQGIKDLLERGGGEKILPVLP-QLIIPLKRALNTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred hHHHHHHhhhhcc-CccHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 4567777777766 555677777777777664 4554444444 488888999999999999999999999944
No 320
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=79.93 E-value=76 Score=32.52 Aligned_cols=286 Identities=14% Similarity=0.160 Sum_probs=148.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011328 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
++..+=+.+-++++.++.-|+-.+.-..++-.++ . .-++-.|...+++++ ..+|..|+..|+-.-.++ .++
T Consensus 416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne-~-----dpalALLsdyv~~~~-s~~ri~aIlGLglayaGs--q~e 486 (878)
T KOG2005|consen 416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNE-C-----DPALALLSDYLQSSS-SIHRIGAILGLGLAYAGS--QRE 486 (878)
T ss_pred hHHHHHHHhhcCCchhhhccceeeeeeccccccc-c-----CHHHHHHHHhccCCC-ceeehHHhhhhHHhhcCC--chH
Confidence 5666667777777766655555444433332111 1 123445566777777 688888887777655422 233
Q ss_pred HHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328 111 VVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 111 ~~~~~g~i~~L~~~L~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 188 (488)
.+. ..|..++.+ ...++...|...|+.+.-.+.+ ..+ ....++.+++.-.........+.....|.-+..
T Consensus 487 ~V~-----~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn--~dv-ts~ilqtlmekse~El~d~~~RFL~LGL~llfl 558 (878)
T KOG2005|consen 487 EVL-----ELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCN--EDV-TSSILQTLMEKSETELEDQWFRFLALGLALLFL 558 (878)
T ss_pred HHH-----HHHhHHhcCCCCchhHHHHHHhhcceeEEecCC--hHH-HHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHh
Confidence 332 255556665 3456777777778777644321 111 111233444333111122222333333333332
Q ss_pred CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCC---cchHhHHHHH
Q 011328 189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS---PSVLIPALRT 265 (488)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~---~~v~~~a~~~ 265 (488)
+. ...+...++.++.-...++..+-..+...+.......-.+-+ ..+........ +.-+..|+--
T Consensus 559 gk--------qe~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~----q~ll~~cgE~~~~~e~~~~~avLg 626 (878)
T KOG2005|consen 559 GK--------QESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQS----QLLLSFCGEHDADLESEQELAVLG 626 (878)
T ss_pred cc--------cchHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEech----hhhhhhcCCCccchhhhccchhhh
Confidence 22 123333444444333444443333333222211111010100 12222222211 1222344444
Q ss_pred HhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHH
Q 011328 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK 345 (488)
Q Consensus 266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~ 345 (488)
++-++.+.+-..+. .+..+-.+|..+ ++.+|+..=.+++-++..+|.. ++++.|-++.++.|.++..
T Consensus 627 iAliAMgeeig~eM-----~lR~f~h~l~yg-e~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~eva~ 693 (878)
T KOG2005|consen 627 IALIAMGEEIGSEM-----VLRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLEVAM 693 (878)
T ss_pred hhhhhhhhhhhhHH-----HHHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchHHHH
Confidence 55555544433222 345566777778 8899999999999888877753 4788888888999999999
Q ss_pred HHHHHHHHhccCC
Q 011328 346 EAAWAISNATSGG 358 (488)
Q Consensus 346 ~a~~aL~~l~~~~ 358 (488)
+++.+++-+-.+.
T Consensus 694 naIfamGLiGAGT 706 (878)
T KOG2005|consen 694 NAIFAMGLIGAGT 706 (878)
T ss_pred HHHHHhccccCCc
Confidence 9999998776544
No 321
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=79.91 E-value=24 Score=34.54 Aligned_cols=142 Identities=11% Similarity=0.115 Sum_probs=79.3
Q ss_pred CChHHHHHHhcccc---hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCH
Q 011328 284 QALPCLLDLLTQNY---KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN 360 (488)
Q Consensus 284 ~~~~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 360 (488)
.+...|.++|...+ .+.+|...+.+|.-|-..+.- .-..++..++.++..++...|.-+..-+.....+.+.
T Consensus 16 ~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~~i-----~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~ 90 (616)
T KOG2229|consen 16 NFPSELKDLLRTNHTVLPPELREKIVKALILLRNKNLI-----VAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINK 90 (616)
T ss_pred hhhHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCcC-----CHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHh
Confidence 45556777775542 577888888887766542111 1113566677778877777766554444333332211
Q ss_pred HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHH
Q 011328 361 EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEI 440 (488)
Q Consensus 361 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v 440 (488)
.....=....+-..+..+|+.+++.--..++..+..+.+.+-+.. +..+..+..-.-|.+++|
T Consensus 91 ~~kn~klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr~iW~d-----------------~~tV~i~~~acf~~~~ki 153 (616)
T KOG2229|consen 91 KHKNDKLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYKRNIWND-----------------SKTVNIITTACFSKVPKI 153 (616)
T ss_pred hcccchHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhccccc-----------------chhHHHHHHHHhccCcHH
Confidence 111111122345677789998888766677777777776655432 112222333345667787
Q ss_pred HHHHHHH
Q 011328 441 YEKAVKI 447 (488)
Q Consensus 441 ~~~a~~~ 447 (488)
.-.+...
T Consensus 154 ~vs~l~F 160 (616)
T KOG2229|consen 154 LVSGLRF 160 (616)
T ss_pred HHhhhHH
Confidence 7666553
No 322
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=79.68 E-value=11 Score=24.84 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=38.1
Q ss_pred HHHHHHhhccHHHHHHhh-cCCCHHHHHHHHHHHHHhcCCCCCCCC
Q 011328 416 FAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILETYWVEEDEDEP 460 (488)
Q Consensus 416 ~~~~l~~~g~~~~L~~l~-~~~~~~v~~~a~~~l~~~~~~~~~~~~ 460 (488)
.++.+++.|+...+..+- ..++++|.....+++.-+..+|.+++.
T Consensus 11 GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE~e~~~ 56 (58)
T PF04064_consen 11 GREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDEPEEGQ 56 (58)
T ss_pred HHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCC
Confidence 488899999999999994 446899999999999999988777554
No 323
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=79.59 E-value=1.2e+02 Score=34.89 Aligned_cols=108 Identities=13% Similarity=0.140 Sum_probs=60.4
Q ss_pred CCHHHHHHh----cCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCH
Q 011328 242 GVCPRLVEL----LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 317 (488)
Q Consensus 242 ~~l~~L~~l----L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 317 (488)
+.++.++.+ +++.++.++..+......+....+... ...++..|+..+.++ ...-...|+.+|..++..++
T Consensus 431 ~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~----qqeVv~~Lvthi~sg-~~~ev~~aL~vL~~L~~~~~ 505 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYC----QQEVVGALVTHIGSG-NSQEVDAALDVLCELAEKNP 505 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHH----HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchh----HHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhccH
Confidence 444554444 577888888888777777766554321 224677788877666 44344688999999987555
Q ss_pred HHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011328 318 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 318 ~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
+....+.. .+..+++.+..=+..-.......|+.++.
T Consensus 506 ~~l~~fa~--~l~giLD~l~~Ls~~qiR~lf~il~~La~ 542 (1426)
T PF14631_consen 506 SELQPFAT--FLKGILDYLDNLSLQQIRKLFDILCTLAF 542 (1426)
T ss_dssp HHHHHTHH--HHHGGGGGGGG--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 55444322 33333344443333333445666666653
No 324
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=79.51 E-value=55 Score=30.70 Aligned_cols=182 Identities=14% Similarity=0.142 Sum_probs=103.1
Q ss_pred chHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHH-Hhcc---c----chhhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 011328 257 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD-LLTQ---N----YKKSIKKEACWTISNITAGNVNQIQAIIEAGI 328 (488)
Q Consensus 257 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~-lL~~---~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 328 (488)
.++...+..+.......+.. .. +...+++.+++ +|.+ . .++++-.-....+..+-....+....+.+ .+
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~-~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~v 118 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDP-EE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-AV 118 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-H-HH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHhccCCH-HH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-HH
Confidence 35667777777766644422 22 33356666666 3321 1 13334333333444443322333444444 36
Q ss_pred hHHHHHHHhcC---ChhHHHHHHHHHHHhccCC-------CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 011328 329 IGPLVNLLLNA---EFEIKKEAAWAISNATSGG-------SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL 398 (488)
Q Consensus 329 l~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~-------~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~ 398 (488)
+...+.++..+ -|+.|..-...|..+...+ +++..+ .+++.+.-.+++.+.++...++.++..++
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~-----~~idsi~wg~kh~~~~I~~~~L~~l~~ll 193 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFK-----LVIDSIVWGFKHTNREISETGLNILLELL 193 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHH-----HHHHHHHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHH-----HHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 67777788764 4678877777777776543 122222 24677777788999999999999999998
Q ss_pred HhhhhhhccCCCCccchHHHHHHhhccHHHHHHh----hcCCCHHHHHHHHHHHHHhcCC
Q 011328 399 KAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL----QSHDNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l----~~~~~~~v~~~a~~~l~~~~~~ 454 (488)
....+... .+...|-+.-.++.++.. .++.+......-..+|.+++.-
T Consensus 194 ~~~~~~~~--------~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ 245 (319)
T PF08767_consen 194 NNVSKTNP--------EFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRL 245 (319)
T ss_dssp HHHHH-SH--------HHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHH
T ss_pred HHHHhcCH--------HHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHH
Confidence 77665110 133444444444444443 4555666666667888888854
No 325
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=79.35 E-value=58 Score=30.85 Aligned_cols=213 Identities=11% Similarity=0.052 Sum_probs=107.8
Q ss_pred HHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcc
Q 011328 132 VREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS 211 (488)
Q Consensus 132 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~ 211 (488)
-|.....+|..+.. .+ ....++..+...+.++.++......+.++..=+..- .......++..+.+-+.+
T Consensus 3 ~r~~~~~~L~~l~~-~~------~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~ 72 (339)
T PF12074_consen 3 QRVLHASMLSSLPS-SS------LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKD 72 (339)
T ss_pred HHHHHHHHHHhCCC-cc------hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcC
Confidence 34445556666654 22 222345677777777788887777777776433322 222335677888888888
Q ss_pred CChhHHHHHHHHHHHhccCCc-hhHHHHHHhCCHHHHHHhc----CCCCcchH---hHHHHHHhHhhcCCchhhHH----
Q 011328 212 NDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELL----RHPSPSVL---IPALRTVGNIVTGDDMQTQC---- 279 (488)
Q Consensus 212 ~~~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL----~~~~~~v~---~~a~~~L~~l~~~~~~~~~~---- 279 (488)
..+.+|..-+..++....... .....+.. .+++.|.+.+ .++.+... ..+..++..+..........
T Consensus 73 kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 151 (339)
T PF12074_consen 73 KKPPVRRAWLLCLGEALWESPNSDSLKFAE-PFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNIS 151 (339)
T ss_pred CCCcHHHHHHHHHHHHHhhccCchHHHHHH-HHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhh
Confidence 888898888888887765110 11111222 4566666665 33333222 11222222211111111000
Q ss_pred ---Hh-h--CC--ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHH
Q 011328 280 ---II-N--HQ--ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAW 349 (488)
Q Consensus 280 ---~~-~--~~--~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~ 349 (488)
+. + .. .-+.+..-+. +.+...-.+.++..+..+..+....-.....-..++.++-+. .+++|+.|..
T Consensus 152 ~~~l~~~~kps~ll~~kvyskl~---~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~ 228 (339)
T PF12074_consen 152 FWSLALDPKPSFLLSEKVYSKLA---SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALS 228 (339)
T ss_pred hhhhccCCCcchhcCHHHHhccC---CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 00 0 00 0112222221 222333344444444443222111111223566677888887 8999999999
Q ss_pred HHHHhccCC
Q 011328 350 AISNATSGG 358 (488)
Q Consensus 350 aL~~l~~~~ 358 (488)
++..+....
T Consensus 229 ~l~~l~~~~ 237 (339)
T PF12074_consen 229 ALKKLYASN 237 (339)
T ss_pred HHHHHHHhC
Confidence 999998754
No 326
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=78.83 E-value=48 Score=29.65 Aligned_cols=124 Identities=20% Similarity=0.312 Sum_probs=75.5
Q ss_pred CCCChhhHHHHhhhccHHHHHHHhcC-----------CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcC
Q 011328 16 KPMDPMFFIIQLQLESLPAMVAGVWS-----------DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR 84 (488)
Q Consensus 16 ~~~~~~~~~~~~~~~~i~~l~~~L~s-----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~ 84 (488)
-|.+.+...+...-..+|.|++.|.. ++......|+..|..+ .+...++.++++++.
T Consensus 17 ~P~~al~~A~~~~e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~------------re~~A~~~li~l~~~ 84 (249)
T PF06685_consen 17 FPREALEAAIEQREEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQF------------REERALPPLIRLFSQ 84 (249)
T ss_pred CcHHHHHHHHHCHHHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHH------------hhhhhHHHHHHHHcC
Confidence 34444444444444557777776642 2223345555555553 233578999999977
Q ss_pred CCChh--------HHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCC--CHHHHHHHHHHHhhhhCCCchhHHHH
Q 011328 85 DDFPQ--------LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDSPKCRDLV 154 (488)
Q Consensus 85 ~~~~~--------v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~ 154 (488)
++ .. +-....+++..+ -.|-++.|.+++.++ +.-+|..|+.+|..++...+..|+.+
T Consensus 85 ~~-~~~~~l~GD~~tE~l~~ilasv------------~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~v 151 (249)
T PF06685_consen 85 DD-DFLEDLFGDFITEDLPRILASV------------GDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEV 151 (249)
T ss_pred Cc-chHHHHHcchhHhHHHHHHHHH------------hCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 66 21 112222233333 336688888888874 56789999999999998888777776
Q ss_pred HhcCChHHHHHH
Q 011328 155 LSNGALMPLLAQ 166 (488)
Q Consensus 155 ~~~~~l~~L~~l 166 (488)
.+ .+..++..
T Consensus 152 i~--~f~~ll~~ 161 (249)
T PF06685_consen 152 IQ--YFRELLNY 161 (249)
T ss_pred HH--HHHHHHHH
Confidence 65 44455544
No 327
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=78.44 E-value=5.8 Score=36.12 Aligned_cols=108 Identities=11% Similarity=0.035 Sum_probs=65.7
Q ss_pred CChhHHHHHHHHHHHhccCCchhHHHHHHh-C--CHHHHHHhcCCC---CcchHhHHHHHHhHhhcCCchhh-HHHhhCC
Q 011328 212 NDDEVLTDACWALSYLSDGTNDKIQAVIEA-G--VCPRLVELLRHP---SPSVLIPALRTVGNIVTGDDMQT-QCIINHQ 284 (488)
Q Consensus 212 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~-~--~l~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~ 284 (488)
..+..+..+++++.|+..+.... ..+.+. + ++..+.....+. +..++..+...+.|++....... ..-....
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ 200 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGR-QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSE 200 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCH-HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccH-HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 46777888999999999876544 333332 2 222222323332 67788888888888875322111 1001112
Q ss_pred ChHHHHH-HhcccchhhHHHHHHHHHHHHhcCCHHHH
Q 011328 285 ALPCLLD-LLTQNYKKSIKKEACWTISNITAGNVNQI 320 (488)
Q Consensus 285 ~~~~L~~-lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 320 (488)
++..+.. +.....++++...++.+++++...++...
T Consensus 201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~ 237 (268)
T PF08324_consen 201 LLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAK 237 (268)
T ss_dssp HHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHH
Confidence 4556666 33343488999999999999997655433
No 328
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=78.36 E-value=21 Score=42.58 Aligned_cols=230 Identities=13% Similarity=0.095 Sum_probs=121.2
Q ss_pred HHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHH---HH--hcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCCh
Q 011328 121 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL---VL--SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 195 (488)
Q Consensus 121 L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~---~~--~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 195 (488)
+...+...+++++..+..++..+......+++. .. ....+..+..+-..++++.++......+. ......
T Consensus 486 ~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~-----~~~~~~ 560 (2341)
T KOG0891|consen 486 VDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN-----ERFDAQ 560 (2341)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc-----cchhhh
Confidence 444566688888888877766665433221110 00 11223333333334455555444433332 111122
Q ss_pred hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch
Q 011328 196 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 275 (488)
Q Consensus 196 ~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 275 (488)
......+..+...+++..-.++..+...+++++..++...-..++.-.+..+-++-.+.-..+...+..-+..+....+.
T Consensus 561 laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~ 640 (2341)
T KOG0891|consen 561 LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPV 640 (2341)
T ss_pred hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHH
Confidence 22334555566666777788888899999998887763322222222222222222222222222333333333332332
Q ss_pred hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHh
Q 011328 276 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNA 354 (488)
Q Consensus 276 ~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l 354 (488)
.....+ ...+..++..+.++ +..+-+.+..+++.|+.-..+......+ ..++.+.+.+... +..-+..+.+++.++
T Consensus 641 ~i~~~v-~~~l~~~~~~~~~~-~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l 717 (2341)
T KOG0891|consen 641 LISPYV-GPILLVLLPKLQDP-SSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQL 717 (2341)
T ss_pred HHHhhc-CchHHHHHHHHhcc-chhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhh
Confidence 322222 24556777777887 7788888899999998733322322333 3455555555543 556678899999999
Q ss_pred ccCC
Q 011328 355 TSGG 358 (488)
Q Consensus 355 ~~~~ 358 (488)
.+..
T Consensus 718 ~s~~ 721 (2341)
T KOG0891|consen 718 ESST 721 (2341)
T ss_pred hccc
Confidence 8654
No 329
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=78.18 E-value=65 Score=30.87 Aligned_cols=156 Identities=15% Similarity=0.133 Sum_probs=86.9
Q ss_pred CHHHHHHhcCCCC-cchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhc---------ccchhhHHHHHHHHHHHH
Q 011328 243 VCPRLVELLRHPS-PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT---------QNYKKSIKKEACWTISNI 312 (488)
Q Consensus 243 ~l~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~---------~~~~~~v~~~a~~~L~nl 312 (488)
+-..++..|.++. +..+..++.++.-+++... ....+........|+.+-. ...+..+-.++..+|+|+
T Consensus 46 L~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~-~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNl 124 (532)
T KOG4464|consen 46 LGERIFEVLENGEPLTHRVVCLETVRILSRDKD-GLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNL 124 (532)
T ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHhcccc-ccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHH
Confidence 3455566665554 3445566666666665322 1111111122222332221 111567889999999999
Q ss_pred hcCCHHHHHHHHHcCChHHHHHHHhcC-----ChhHHHHHHHHHHHhccCCCHHHH-HHHHHCCChHHHHhhcCCC----
Q 011328 313 TAGNVNQIQAIIEAGIIGPLVNLLLNA-----EFEIKKEAAWAISNATSGGSNEQI-KFLVSQGCIKPLCDLLNCP---- 382 (488)
Q Consensus 313 ~~~~~~~~~~l~~~~~l~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~-~~l~~~~~i~~L~~ll~~~---- 382 (488)
..+++..++...+......+++.+... -.+++..-+..|--+..-. ...+ +.+.+.++++.+.+.++++
T Consensus 125 vf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale-~~~Rsql~~~l~Gl~~lt~~led~lgid 203 (532)
T KOG4464|consen 125 VFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALE-TDHRSQLIAELLGLELLTNWLEDKLGID 203 (532)
T ss_pred HhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhh-HHHHHHHHHHhcccHHHHHHhhccccCC
Confidence 999899888888877777776665432 1123333333333332222 2333 4446678899999888742
Q ss_pred -----C---HHHHHHHHHHHHHHHHh
Q 011328 383 -----D---PRIVTVCLEGLENILKA 400 (488)
Q Consensus 383 -----~---~~v~~~al~~L~~l~~~ 400 (488)
. ++-...|+++|..++..
T Consensus 204 se~n~~~l~pqe~n~a~EaLK~~FNv 229 (532)
T KOG4464|consen 204 SEINVPPLNPQETNRACEALKVFFNV 229 (532)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHhhe
Confidence 1 24446677777766653
No 330
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=77.99 E-value=17 Score=28.00 Aligned_cols=70 Identities=19% Similarity=0.302 Sum_probs=51.1
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHh-----h-cCCCHHHHHHH
Q 011328 371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL-----Q-SHDNTEIYEKA 444 (488)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l-----~-~~~~~~v~~~a 444 (488)
++..|..-+.+.++.++..++..|..+++.+... |...+.+...+..+..+ . ...+..|+.++
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~-----------f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~ 106 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER-----------FHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKA 106 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH-----------HHHHHHHhHHHHHHHHhhccccccCCCChHHHHHH
Confidence 4667777778889999999999999999887643 56666666555555332 2 23478899999
Q ss_pred HHHHHHh
Q 011328 445 VKILETY 451 (488)
Q Consensus 445 ~~~l~~~ 451 (488)
..++...
T Consensus 107 ~~l~~~w 113 (115)
T cd00197 107 IELVQLW 113 (115)
T ss_pred HHHHHHH
Confidence 9888754
No 331
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=76.68 E-value=71 Score=30.40 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHh
Q 011328 129 TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL 208 (488)
Q Consensus 129 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~l 208 (488)
+..-++.|...+.+...+-|...+. ++..-+.+. .+.|..++++|..-|-.+|.++ ....+.+.|+++
T Consensus 37 ~~k~k~lasq~ip~~fk~fp~la~~-----a~da~~d~~-ed~d~~ir~qaik~lp~fc~~d------~~~rv~d~l~qL 104 (460)
T KOG2213|consen 37 TSKEKRLASQFIPRFFKHFPSLADE-----AIDAQLDLC-EDDDVGIRRQAIKGLPLFCKGD------ALSRVNDVLVQL 104 (460)
T ss_pred chHHHHHHHHHHHHHHhhCchhhhH-----HHHhhhccc-cccchhhHHHHHhccchhccCc------hhhhhHHHHHHH
Confidence 3444556677777776655544332 455566666 6778888999999888888873 122333444444
Q ss_pred hc------------cCChhHHHHHHHHHHH-hccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011328 209 IH------------SNDDEVLTDACWALSY-LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 271 (488)
Q Consensus 209 l~------------~~~~~v~~~al~~L~~-l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 271 (488)
|. ..|..+++.++..|.. +..-.++....-++..+++.+...|.+-..+--...+..|+++..
T Consensus 105 Lnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~ 180 (460)
T KOG2213|consen 105 LNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKS 180 (460)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Confidence 43 2356666666666553 222222222233333445555555555433333344555555544
No 332
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=76.64 E-value=7.1 Score=36.57 Aligned_cols=81 Identities=20% Similarity=0.329 Sum_probs=65.2
Q ss_pred CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc-CCCHHHHHHHHHHH
Q 011328 370 GCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS-HDNTEIYEKAVKIL 448 (488)
Q Consensus 370 ~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~-~~~~~v~~~a~~~l 448 (488)
.+++.+.+-+++.++.|+..|+..+..++..+.+. |+..+........|..+.. +..+.|.++...++
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~-----------~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv 113 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKR-----------FRLEVSSRDFTTELRALIESKAHPKVCEKMRDLV 113 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchH-----------HHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 36888889999999999999999999988776543 5666777777788888887 77899999999998
Q ss_pred HHhcCCCCCCCCC
Q 011328 449 ETYWVEEDEDEPL 461 (488)
Q Consensus 449 ~~~~~~~~~~~~~ 461 (488)
.+..+.-.+|-.+
T Consensus 114 ~eWsee~K~Dp~l 126 (462)
T KOG2199|consen 114 KEWSEEFKKDPSL 126 (462)
T ss_pred HHHHHHhccCcch
Confidence 8888766665443
No 333
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=74.46 E-value=31 Score=27.81 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=57.2
Q ss_pred ChHHHHHHHhc-CChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHH-HHhhcCC---CCHHHHHHHHHHHHHHHHh
Q 011328 328 IIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKP-LCDLLNC---PDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 328 ~l~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~-L~~ll~~---~~~~v~~~al~~L~~l~~~ 400 (488)
++..|..-+.. .++.++..|+..|-.++.++.......+...+++.. |.+++.. .+..|+..++..+......
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 45555565664 588899999999999999999888888898899997 9999873 3457888888877766543
No 334
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=74.12 E-value=20 Score=28.84 Aligned_cols=141 Identities=16% Similarity=0.155 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHhcCCC-chhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHh
Q 011328 89 QLQFEAAWALTNIASGT-SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF 167 (488)
Q Consensus 89 ~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll 167 (488)
-++.+.+.++..++... |+.- .+.++.++..+.+ ++......+.+|..+.++-... ..
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~W-----p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~-----~~---------- 61 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQW-----PDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDF-----RR---------- 61 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTS-----TTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTS-----HC----------
T ss_pred hHHHHHHHHHHHHHHHHChhhC-----chHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhh-----hc----------
Confidence 46677777888777622 2211 1356777777766 4666667777777775321100 00
Q ss_pred cccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCC----hhHHHHHHHHHHHhccCCchhHHHHHHhCC
Q 011328 168 NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAGV 243 (488)
Q Consensus 168 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~----~~v~~~al~~L~~l~~~~~~~~~~~~~~~~ 243 (488)
......-+...-..+..- ...+++.+.+.+.... ..+...++.++.......+ ...+.+.++
T Consensus 62 -~~~~~~r~~~l~~~l~~~-----------~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~~~~ 127 (148)
T PF08389_consen 62 -SSLSQERRRELKDALRSN-----------SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP--IELIINSNL 127 (148)
T ss_dssp -CHSHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSH
T ss_pred -hhhhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhccHHH
Confidence 000011111111111111 1234444455554322 7888889999998877543 355667788
Q ss_pred HHHHHHhcCCCCcchHhHHHHHH
Q 011328 244 CPRLVELLRHPSPSVLIPALRTV 266 (488)
Q Consensus 244 l~~L~~lL~~~~~~v~~~a~~~L 266 (488)
++.+.+++.+ +..+..|+.+|
T Consensus 128 l~~~~~~l~~--~~~~~~A~~cl 148 (148)
T PF08389_consen 128 LNLIFQLLQS--PELREAAAECL 148 (148)
T ss_dssp HHHHHHHTTS--CCCHHHHHHHH
T ss_pred HHHHHHHcCC--HHHHHHHHHhC
Confidence 9999999944 45688888775
No 335
>PLN03205 ATR interacting protein; Provisional
Probab=73.91 E-value=84 Score=29.95 Aligned_cols=162 Identities=15% Similarity=0.188 Sum_probs=96.8
Q ss_pred hhhchHHHHHHhhccCChhHHHHHHHHHHHhccC---CchhHHHHHHhCCHH---HHHHh-cCCCCcchHhHHHHHHhHh
Q 011328 197 QTRPALPALERLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVCP---RLVEL-LRHPSPSVLIPALRTVGNI 269 (488)
Q Consensus 197 ~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~---~~~~~~~~~~~~~l~---~L~~l-L~~~~~~v~~~a~~~L~~l 269 (488)
....++..|+.+..-++..+...+++.|..+..+ +..+.+.-.+.+.+. .+.+. ..+..+.++..|+.++.-+
T Consensus 320 ~lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVI 399 (652)
T PLN03205 320 NLKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNII 399 (652)
T ss_pred eHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHh
Confidence 3456677777777777778888888877766532 222333333333322 22222 1345667888888887776
Q ss_pred hcCCch--hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHH-----------H-----------
Q 011328 270 VTGDDM--QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII-----------E----------- 325 (488)
Q Consensus 270 ~~~~~~--~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-----------~----------- 325 (488)
...+.. .++.+....+++.+..+|+.+.-..|+++++..+.-+... +.....+. +
T Consensus 400 lmssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNC-pklL~iFcSg~~e~~~ad~eNd~~~n~st~k 478 (652)
T PLN03205 400 VMSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNC-PKLYDRFDSLHEEKNSSDTENDSEGNFFALE 478 (652)
T ss_pred hhccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcC-cHHHHHHhcCCccccccccccccccccccHH
Confidence 654443 3344445577888888997765667888887665533321 11111111 0
Q ss_pred --cCChHHHHHHHhcC-----ChhHHHHHHHHHHHhccCCC
Q 011328 326 --AGIIGPLVNLLLNA-----EFEIKKEAAWAISNATSGGS 359 (488)
Q Consensus 326 --~~~l~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~ 359 (488)
..++.-|-+++... +.++++.+...|+.+++.+.
T Consensus 479 ~fSsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk 519 (652)
T PLN03205 479 AFGKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGN 519 (652)
T ss_pred HHHHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCC
Confidence 11355555566543 66788999999999988763
No 336
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.82 E-value=1.5e+02 Score=33.50 Aligned_cols=97 Identities=13% Similarity=0.041 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc---ccc---cHhHHHHHHHHHHHhhcCC-CCCChhhhh
Q 011328 127 SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHA---KLSMLRNATWTLSNFCRGK-PQPLFEQTR 199 (488)
Q Consensus 127 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~---~~~---~~~v~~~a~~~L~~l~~~~-~~~~~~~~~ 199 (488)
.+..+++...+.++.++.....+ .+.. + -+.+++++. ... ...+.+.+..+|.-++.+. +........
T Consensus 853 ~~~~evr~~sl~~l~silet~ge---~ll~-~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~ 927 (1610)
T KOG1848|consen 853 SRGVEVRISSLEALVSILETVGE---HLLH-G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL 927 (1610)
T ss_pred CccceeeHHHHHHHHHHHhccch---hhcc-c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH
Confidence 36677888888888888754332 1211 1 334444442 111 3456667777777777665 555566667
Q ss_pred chHHHHHHhhcc-CChhHHHHHHHHHHHhc
Q 011328 200 PALPALERLIHS-NDDEVLTDACWALSYLS 228 (488)
Q Consensus 200 ~~~~~l~~ll~~-~~~~v~~~al~~L~~l~ 228 (488)
+++..+..+-+. .|..+--.|+..+++++
T Consensus 928 ~lidtl~~fs~QktdlNISltAi~lfWtvs 957 (1610)
T KOG1848|consen 928 DLIDTLLVFSRQKTDLNISLTAIGLFWTVS 957 (1610)
T ss_pred HHHHHHHHHHhhhccccccHHHHHHHHHHH
Confidence 777777777654 46666666666666554
No 337
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=73.70 E-value=1.2e+02 Score=31.70 Aligned_cols=149 Identities=12% Similarity=0.127 Sum_probs=93.0
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccH--HHH-----------------------------HHcCCHHHH
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPI--NEV-----------------------------IQSGVVPRF 78 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~--~~~-----------------------------~~~~~i~~L 78 (488)
..+..|+...++....-.+.++.+|..+.-+.--+.+ ..+ .-..+++.|
T Consensus 230 k~lEtLls~c~KKsk~~a~~~l~~LkdlfI~~LLPdRKLk~f~qrp~~~l~~~~~~~k~Ll~WyfE~~LK~ly~rfievL 309 (988)
T KOG2038|consen 230 KSLETLLSSCKKKSKRDALQALPALKDLFINGLLPDRKLKYFSQRPLLELTNKRLRDKILLMWYFEHELKILYFRFIEVL 309 (988)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCcchhhHHHhhChhhhccccccccceehHHHHHHHHHHHHHHHHHHH
Confidence 5566777777766666666677766665432100000 000 011345555
Q ss_pred HHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcC
Q 011328 79 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG 158 (488)
Q Consensus 79 ~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 158 (488)
..+-+++- +.++.+++..+..+....|+.-.. ++..++.-|.+++..+...|...|.+|...+|..+..+.
T Consensus 310 e~lS~D~L-~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vvi--- 380 (988)
T KOG2038|consen 310 EELSKDPL-EEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVVI--- 380 (988)
T ss_pred HHHccccH-HHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeehH---
Confidence 55556666 889999999999988867776443 367788888888888999999999999888887554433
Q ss_pred ChHHHHHHhc-ccccHhHHHHHHHHHHHhhcC
Q 011328 159 ALMPLLAQFN-EHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 159 ~l~~L~~ll~-~~~~~~v~~~a~~~L~~l~~~ 189 (488)
..+.+++- .+.+.....+|+..|..+.-.
T Consensus 381 --~EIer~~FRpn~~~ra~Yyav~fLnQ~~Ls 410 (988)
T KOG2038|consen 381 --DEIERLAFRPNVSERAHYYAVIFLNQMKLS 410 (988)
T ss_pred --HHHHHHHcccCccccceeehhhhhhhhHhc
Confidence 33444432 333445555666666655433
No 338
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=72.40 E-value=20 Score=27.59 Aligned_cols=73 Identities=16% Similarity=0.122 Sum_probs=52.0
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHh-----hcCCCChhHHHHHHHHHHHhc
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEF-----LSRDDFPQLQFEAAWALTNIA 102 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~l-----L~~~~~~~v~~~a~~~L~~l~ 102 (488)
..+..|.+.|.+.++.+++.|+..|-.++.+.+......+....++..++++ ........+|..+...+...+
T Consensus 37 ~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 37 EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 4566788888899999999999999999887755666666666666666543 111123688888887776543
No 339
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=72.04 E-value=31 Score=27.90 Aligned_cols=101 Identities=16% Similarity=0.118 Sum_probs=54.4
Q ss_pred hHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHH
Q 011328 201 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCI 280 (488)
Q Consensus 201 ~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 280 (488)
-...++++|+++...-....+..|.+-..-.-+. ...++.+++..+..-=.....--+..|+..|+.|..+..
T Consensus 23 Qt~~lielLk~~~~~~~~~lldLL~~RV~PGVD~-AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYN------ 95 (154)
T PF11791_consen 23 QTAELIELLKNPPAGEEAFLLDLLTNRVPPGVDE-AAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYN------ 95 (154)
T ss_dssp HHHHHHHHHHS--TT-HHHHHHHHHHSS--TT-H-HHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTT------
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHhcCCCCCCh-HHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCc------
Confidence 3445667777665444445555555544322222 234555555555444322233345678888888876433
Q ss_pred hhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011328 281 INHQALPCLLDLLTQNYKKSIKKEACWTISNITA 314 (488)
Q Consensus 281 ~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 314 (488)
+..|+++|.+. +..+...|+.+|.+-..
T Consensus 96 -----V~~LI~~L~~~-d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 96 -----VQPLIDLLKSD-DEELAEEAAEALKNTLL 123 (154)
T ss_dssp -----HHHHHHGG--G--TTTHHHHHHHHHT--T
T ss_pred -----HHHHHHHHcCC-cHHHHHHHHHHHHhhHH
Confidence 56799999888 88899999999987655
No 340
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=71.06 E-value=69 Score=35.47 Aligned_cols=244 Identities=15% Similarity=0.131 Sum_probs=130.9
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchh-HHHHHHhCCHHHH--------HHhcC-CCCcchHhHHHHHHhH
Q 011328 199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK-IQAVIEAGVCPRL--------VELLR-HPSPSVLIPALRTVGN 268 (488)
Q Consensus 199 ~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~-~~~~~~~~~l~~L--------~~lL~-~~~~~v~~~a~~~L~~ 268 (488)
.+++..|+..+-++.+.+|.-+..+++.+....... ....++.-.+..+ -+... +--..+++.+.++|+.
T Consensus 76 ~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~ 155 (1549)
T KOG0392|consen 76 LSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGA 155 (1549)
T ss_pred HHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHH
Confidence 566677777777888888888888888776432211 1112221111111 11111 1123688999999998
Q ss_pred hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHH
Q 011328 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA 348 (488)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 348 (488)
+..+...... ...++.+..++..+ .++++...+..+.....-..+....+. ..+++..+.-+.+.+.+++..|+
T Consensus 156 ~l~~~~~s~~----~~~~~il~q~~~q~-~w~ir~Ggll~iky~~air~d~l~~~~-~~vl~~~i~~L~ds~ddv~~~aa 229 (1549)
T KOG0392|consen 156 YLKHMDESLI----KETLDILLQMLRQP-NWEIRHGGLLGIKYNVAIRQDLLFQLL-NLVLDFVIEGLEDSDDDVRSVAA 229 (1549)
T ss_pred HHHhhhhHhh----HHHHHHHHHHHcCc-chhheechHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhcchHHHHHHH
Confidence 8875432211 14567788888777 777776665555533321122222222 23677888888888999999999
Q ss_pred HHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCH--HHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccH
Q 011328 349 WAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP--RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGL 426 (488)
Q Consensus 349 ~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~--~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 426 (488)
..+.-.+........+.+. .++..+...+..-+. .-.......+..++...+... .+...=.+.|..
T Consensus 230 ~~l~~~~s~~v~l~~~~i~--~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~---------l~~~~n~~~~Lv 298 (1549)
T KOG0392|consen 230 QFLVPAPSIQVKLMVQKIA--KLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLD---------LFEQQNLEVGLV 298 (1549)
T ss_pred HHhhhhhHHHHhhhHhHHH--HHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHH---------HHHHhhhhhccc
Confidence 9888776543111112211 123333332221111 000111122222222221110 011111224667
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 011328 427 EKIENLQSHDNTEIYEKAVKILETYWVEEDEDE 459 (488)
Q Consensus 427 ~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~ 459 (488)
+.+--+..+.-..++..+...+..+.+.++.+.
T Consensus 299 p~~~p~l~~~i~sv~~a~l~~l~~lle~~~qs~ 331 (1549)
T KOG0392|consen 299 PRLWPFLRHTISSVRRAALETLAMLLEADDQSD 331 (1549)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 777777888878889999999999988875443
No 341
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.36 E-value=45 Score=31.74 Aligned_cols=113 Identities=14% Similarity=0.182 Sum_probs=80.2
Q ss_pred ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHH-HHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHH
Q 011328 285 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ-AIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 363 (488)
Q Consensus 285 ~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~-~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 363 (488)
-+.-++..+++. +..+|..|...+..+....+.... .+. .+++.+..+..+.+..+|.....++-.+.....++..
T Consensus 59 tlkeLl~qlkHh-NakvRkdal~glkd~l~s~p~~l~~~~~--~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~ 135 (393)
T KOG2149|consen 59 TLKELLSQLKHH-NAKVRKDALNGLKDLLKSHPAELQSHLY--ALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQ 135 (393)
T ss_pred cHHHHHhhhcCc-hHhhhHHHHHHHHHHHHhChHHHHHHHH--HHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhh
Confidence 456688888888 999999999999988775444333 222 3777888888888999999999999887765544431
Q ss_pred HHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011328 364 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 401 (488)
Q Consensus 364 ~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 401 (488)
..+ -.=.++.+...+.+-.++++..++..+..++...
T Consensus 136 sp~-~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 136 SPM-VSLLMPYISSAMTHITPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred cch-HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHc
Confidence 111 1123455555566777888888888888777654
No 342
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=68.88 E-value=31 Score=34.31 Aligned_cols=84 Identities=17% Similarity=0.200 Sum_probs=57.9
Q ss_pred HHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccCC------------CHHHHHHHHHCCChHHHHhhcCC-CC
Q 011328 318 NQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGG------------SNEQIKFLVSQGCIKPLCDLLNC-PD 383 (488)
Q Consensus 318 ~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~------------~~~~~~~l~~~~~i~~L~~ll~~-~~ 383 (488)
...+-+.+.++++.|+.+|... +.+++..|+..|..+.... .......|.....+..|++.+-. ..
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~ 132 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQG 132 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCC
Confidence 4445556789999999999744 7788889998888775422 24566777777788888875442 33
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 011328 384 PRIVTVCLEGLENILKAG 401 (488)
Q Consensus 384 ~~v~~~al~~L~~l~~~~ 401 (488)
......++.++..+++..
T Consensus 133 ~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 133 GSSLVNGVSILIELIRKN 150 (475)
T ss_pred cchHHHHHHHHHHHHHhc
Confidence 455566777777776544
No 343
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=68.39 E-value=1.3e+02 Score=29.88 Aligned_cols=228 Identities=15% Similarity=0.115 Sum_probs=119.1
Q ss_pred ChHHHHHHhcccccHhHHHHHHHHHHHhhcCC-----------CCCChhhhhchHHHHHHhhcc----CC----hhHHHH
Q 011328 159 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-----------PQPLFEQTRPALPALERLIHS----ND----DEVLTD 219 (488)
Q Consensus 159 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~-----------~~~~~~~~~~~~~~l~~ll~~----~~----~~v~~~ 219 (488)
++..+.+.+..+....++.++.|.|.++-... ++....-...++...+.++-. +. +.....
T Consensus 98 vir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvkv 177 (589)
T PF11229_consen 98 VIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVKV 177 (589)
T ss_pred HHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHHH
Confidence 56666777766677788999999998763211 122333345666666666642 22 333444
Q ss_pred HHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchh
Q 011328 220 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK 299 (488)
Q Consensus 220 al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~ 299 (488)
++.-+........ ...+--.-++..|+++ +-.++++..++.+...=+..+ .....++..=+.|.++.-++.
T Consensus 178 vl~~ia~vgeS~q--yPPVNWaalLsPLMRl--nfGeEvq~lCLeiAvtQaqSS-qsAa~fLg~WlsPpli~sLs~---- 248 (589)
T PF11229_consen 178 VLKPIATVGESYQ--YPPVNWAALLSPLMRL--NFGEEVQQLCLEIAVTQAQSS-QSAAMFLGSWLSPPLIHSLSV---- 248 (589)
T ss_pred HHHHhhhcCCCCC--CCCccHHHHhhHHHhc--cccHHHHHHHHHHHHHhcccc-ccHHHHHHhhcCcchhhhhhH----
Confidence 4444444332211 0101111233444443 224678888877654444422 334455555566666666643
Q ss_pred hHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHH--HHHHHHCCChHHHH
Q 011328 300 SIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ--IKFLVSQGCIKPLC 376 (488)
Q Consensus 300 ~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~--~~~l~~~~~i~~L~ 376 (488)
..|+..+.-+.-... -.++.++.+++.-++..+-..-.-.++++...++..|..-....++.. ...+. ...+.+.
T Consensus 249 ~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~P~~h~Ws~Lc--~ttekIF 326 (589)
T PF11229_consen 249 NTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKLPSPAQHCWSLLC--ETTEKIF 326 (589)
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCCChhhHHHHHHH--HHHHHHH
Confidence 355666655555555 346666666664233322222222367888888888887666554432 22233 2566666
Q ss_pred hhcC----CCCHHHHHHHHHHHHHH
Q 011328 377 DLLN----CPDPRIVTVCLEGLENI 397 (488)
Q Consensus 377 ~ll~----~~~~~v~~~al~~L~~l 397 (488)
+++- .++-+......++|..+
T Consensus 327 ~lLPn~i~~~eveLYi~vAkCLSEM 351 (589)
T PF11229_consen 327 DLLPNKIQRNEVELYIGVAKCLSEM 351 (589)
T ss_pred HhCcccccHHHHHHHHHHHHHHhhc
Confidence 6663 22334444455555544
No 344
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=68.30 E-value=52 Score=31.24 Aligned_cols=112 Identities=17% Similarity=0.142 Sum_probs=69.3
Q ss_pred hchHHHHHHhhccC-------ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC----------CCcchHhH
Q 011328 199 RPALPALERLIHSN-------DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH----------PSPSVLIP 261 (488)
Q Consensus 199 ~~~~~~l~~ll~~~-------~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~----------~~~~v~~~ 261 (488)
...+|.++.++... +.......++.+..|..+..-..+..+. .+++.++.++-. +...+|..
T Consensus 209 ~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh-~Lip~vltclv~~~l~~~~~~~~h~~LRd~ 287 (343)
T cd08050 209 QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLH-QLIPSVLTCLVAKQLCSRPPDDNHWALRDY 287 (343)
T ss_pred hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHH-HHHHHHHHHhhhHhhcCCCCCchHHHHHHH
Confidence 45677777776532 5667778888888888776655554444 477877777622 23579999
Q ss_pred HHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchh-hHHHHHHHHHHHH
Q 011328 262 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK-SIKKEACWTISNI 312 (488)
Q Consensus 262 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~-~v~~~a~~~L~nl 312 (488)
|..+++.++......... +...+...+.+.+.++..+ .....|+..|..+
T Consensus 288 AA~ll~~i~~~f~~~y~~-l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 288 AARLLAQICRKFSTSYNT-LQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 999999998754332221 2334555666666544222 3356666666655
No 345
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=67.88 E-value=80 Score=33.15 Aligned_cols=81 Identities=16% Similarity=0.173 Sum_probs=60.1
Q ss_pred CcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHH
Q 011328 255 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVN 334 (488)
Q Consensus 255 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ 334 (488)
.+..|..++..|+.+....+...-.+.+..+++.|++.|....+..+...|+.+|..+.-.-+......+. .++....+
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~-~Lf~If~R 159 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLP-DLFNIFGR 159 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHH-HHHHHHHH
Confidence 45688999999999999989898889999999999999987767778888888888887643332222221 24444445
Q ss_pred HH
Q 011328 335 LL 336 (488)
Q Consensus 335 ll 336 (488)
++
T Consensus 160 l~ 161 (668)
T PF04388_consen 160 LL 161 (668)
T ss_pred HH
Confidence 55
No 346
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=67.48 E-value=39 Score=35.68 Aligned_cols=168 Identities=14% Similarity=0.135 Sum_probs=100.3
Q ss_pred ccHHHHHHcCCHHHHHHhhcCC-CC------hhHHHHHHHHHHHhcCCCchhhHHHHhC--------CCHHHHHHhhCC-
Q 011328 64 PPINEVIQSGVVPRFIEFLSRD-DF------PQLQFEAAWALTNIASGTSENTRVVIDH--------GAVPIFVRLLSS- 127 (488)
Q Consensus 64 ~~~~~~~~~~~i~~L~~lL~~~-~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~--------g~i~~L~~~L~~- 127 (488)
+....+...+.+..++++.+.+ +| .+....|+.+|.-+.. -|+.+..+... .++..++..-.-
T Consensus 592 ~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~-iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~ 670 (1516)
T KOG1832|consen 592 PAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS-IPDIQKALAHATLSNNRAYDGIAIILDAANGS 670 (1516)
T ss_pred hHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe-cchHHHHHHHHHhhcccccCceEEEeeccccc
Confidence 4456677788888888887643 21 3455666666666655 57777666422 234444443221
Q ss_pred ---CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCCh--HHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchH
Q 011328 128 ---PTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL--MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPAL 202 (488)
Q Consensus 128 ---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l--~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 202 (488)
-+++++..|+.+|-|+....|.++...+..-.- ..=-..+...+......+.+.-.++-.+. ..++
T Consensus 671 ~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~---------ndGI 741 (1516)
T KOG1832|consen 671 NSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRG---------NDGI 741 (1516)
T ss_pred ccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhc---------CccH
Confidence 479999999999999988777665543221000 00000111223334455555555555444 3677
Q ss_pred HHHHHhhccC-----ChhHHHHHHHHHHHhccCCchhHHHHHHhC
Q 011328 203 PALERLIHSN-----DDEVLTDACWALSYLSDGTNDKIQAVIEAG 242 (488)
Q Consensus 203 ~~l~~ll~~~-----~~~v~~~al~~L~~l~~~~~~~~~~~~~~~ 242 (488)
..|+++|+-. -..++..|+.+|.-++.++. ..+.+.+..
T Consensus 742 kiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~t-VrQIltKLp 785 (1516)
T KOG1832|consen 742 KILLKLLQYKNPPTTADCIRALACRVLLGLARDDT-VRQILTKLP 785 (1516)
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcH-HHHHHHhCc
Confidence 8888888743 35788999999999988764 334444433
No 347
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=67.15 E-value=23 Score=28.45 Aligned_cols=125 Identities=18% Similarity=0.248 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc---------hhHHHH----HH
Q 011328 175 MLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN---------DKIQAV----IE 240 (488)
Q Consensus 175 v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~---------~~~~~~----~~ 240 (488)
++...+.++..++... |... ..+++.++.++.+ ++......+.+|..+.+.-. .+...+ .+
T Consensus 4 i~~kl~~~l~~i~~~~~P~~W----p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~ 78 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQW----PDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRS 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTTS----TTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhhC----chHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHH
Confidence 4566667777766544 3333 3466667777665 35555556666655542211 111111 11
Q ss_pred --hCCHHHHHHhcCCCC----cchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHH
Q 011328 241 --AGVCPRLVELLRHPS----PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 309 (488)
Q Consensus 241 --~~~l~~L~~lL~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L 309 (488)
..++..+.+.+.... +.+...++.++......- ....+.+..+++.+.+++.++ .++..|+.+|
T Consensus 79 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~--~~~~i~~~~~l~~~~~~l~~~---~~~~~A~~cl 148 (148)
T PF08389_consen 79 NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWI--PIELIINSNLLNLIFQLLQSP---ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSC---CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhC--CHHHhccHHHHHHHHHHcCCH---HHHHHHHHhC
Confidence 134444555554422 678889999999988733 345566778999999999655 4477776654
No 348
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=66.22 E-value=1.6e+02 Score=30.22 Aligned_cols=163 Identities=12% Similarity=0.101 Sum_probs=83.3
Q ss_pred hccCChhHHHHHHHHHHHhccCCchhHHHHH---HhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCC
Q 011328 209 IHSNDDEVLTDACWALSYLSDGTNDKIQAVI---EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQA 285 (488)
Q Consensus 209 l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~---~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 285 (488)
+..-..+.+..|+.+|+.+..+......... ...++..++..+. .++..+..++++|.|+..+ +..++.+.. .
T Consensus 553 l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s-~- 628 (745)
T KOG0301|consen 553 LLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMS-R- 628 (745)
T ss_pred HhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHH-H-
Confidence 3344567778888888877766543322222 1234555555555 5577788999999999885 444433322 1
Q ss_pred hHHHHHHh---cccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc---C--ChhHHHHHHHHHHHhccC
Q 011328 286 LPCLLDLL---TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN---A--EFEIKKEAAWAISNATSG 357 (488)
Q Consensus 286 ~~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~---~--~~~v~~~a~~aL~~l~~~ 357 (488)
...+...+ ++..+..++........|++.. ..+.-.+.+..+.+...+.. + +.+-....+.||++++..
T Consensus 629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~ 705 (745)
T KOG0301|consen 629 LESILDPVIEASSLSNKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV 705 (745)
T ss_pred HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc
Confidence 22222211 2221445555544444455431 00000112344444444432 2 334455677788888765
Q ss_pred CCHHHHHHHHHCCChHHHHhhcC
Q 011328 358 GSNEQIKFLVSQGCIKPLCDLLN 380 (488)
Q Consensus 358 ~~~~~~~~l~~~~~i~~L~~ll~ 380 (488)
. ....++...--++.+.+-++
T Consensus 706 ~--~~~~~~A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 706 D--ASVIQLAKNRSVDSIAKKLK 726 (745)
T ss_pred c--HHHHHHHHhcCHHHHHHHHH
Confidence 4 34455555445555555444
No 349
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=66.09 E-value=1e+02 Score=29.28 Aligned_cols=110 Identities=13% Similarity=0.127 Sum_probs=67.5
Q ss_pred ChHHHHHHhccc-----c-cHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc----------cCChhHHHHHHH
Q 011328 159 ALMPLLAQFNEH-----A-KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----------SNDDEVLTDACW 222 (488)
Q Consensus 159 ~l~~L~~ll~~~-----~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~----------~~~~~v~~~al~ 222 (488)
.++.++..+... . +.......+..+..|..+..-........++|.++.++- .++..+|..|..
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 355666655321 1 456677778888888888755556666778888887763 134688999999
Q ss_pred HHHHhccCCchhHHHHHHhCCHHHHHHhcCCCC-c-chHhHHHHHHhHh
Q 011328 223 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS-P-SVLIPALRTVGNI 269 (488)
Q Consensus 223 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~-~v~~~a~~~L~~l 269 (488)
.+..++........ -+...+...+.+.+.++. + ....-|+..|..+
T Consensus 291 ll~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 291 LLAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 99999855332222 233355556666665533 2 2244555555544
No 350
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.06 E-value=71 Score=30.51 Aligned_cols=114 Identities=15% Similarity=0.126 Sum_probs=79.6
Q ss_pred hHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHH
Q 011328 201 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCI 280 (488)
Q Consensus 201 ~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 280 (488)
-+.-++.-+++.+.+++..++..+..+..+.+.... .-...+++.+..+..+.+..+|......+-.+...........
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 345566777888999999999999988766443322 2223667778888888888899988888877665433222222
Q ss_pred hhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC
Q 011328 281 INHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 316 (488)
Q Consensus 281 ~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 316 (488)
.-.-+++.+...|.+. .+.+|..++..+.-+....
T Consensus 138 ~~~l~~~yi~~AMThi-t~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHI-TPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred hHHHHHHHHHHHHhhc-cHHHHHhhHHHHHHHHHHc
Confidence 2223456666777777 8899999999998888743
No 351
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=65.88 E-value=73 Score=28.96 Aligned_cols=74 Identities=15% Similarity=0.173 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhccCC----CCccchHHHHHHhhccHHHHHHhhcCCC-HHHHHHHHHHHHHhcCCCC
Q 011328 383 DPRIVTVCLEGLENILKAGEAEKNMGN----TGGVNLFAQAIDDAEGLEKIENLQSHDN-TEIYEKAVKILETYWVEED 456 (488)
Q Consensus 383 ~~~v~~~al~~L~~l~~~~~~~~~~~~----~~~~~~~~~~l~~~g~~~~L~~l~~~~~-~~v~~~a~~~l~~~~~~~~ 456 (488)
+..+.+.++..++|++...+....... ....+.+...|.++|.++.|..+..+.+ .+.......++..+|.+.+
T Consensus 133 d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~~ 211 (266)
T PF04821_consen 133 DNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQD 211 (266)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCCC
Confidence 457889999999999987433221110 0112446677888999999999987763 3334466677777776653
No 352
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=64.79 E-value=66 Score=26.73 Aligned_cols=108 Identities=15% Similarity=0.140 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHhccCC-----Cc---cHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH-h
Q 011328 44 RNIQLDATTQFRKLLSIER-----SP---PINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI-D 114 (488)
Q Consensus 44 ~~~~~~a~~~L~~l~~~~~-----~~---~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~ 114 (488)
...+.-++..+..++...+ .+ ....+++..+.+.+.+.+.+++ +.+-..+++++..+.. ..+..+. +
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~---~~~~~Lk~e 111 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLS---RFRSHLKLE 111 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 3556677888877766531 12 3455567788888999888888 8999999999999985 3333332 1
Q ss_pred CC-CHHHHHH-hhCCC--CHHHHHHHHHHHhhhhCCCchhHHHHH
Q 011328 115 HG-AVPIFVR-LLSSP--TDDVREQAVWALGNVAGDSPKCRDLVL 155 (488)
Q Consensus 115 ~g-~i~~L~~-~L~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~ 155 (488)
.+ .++.+.. +++++ +...|..++.++..++.++.-..+...
T Consensus 112 le~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~lf~ 156 (168)
T PF12783_consen 112 LEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDLFV 156 (168)
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHHHH
Confidence 12 2344444 56653 357888899999999987654444443
No 353
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=64.56 E-value=14 Score=26.72 Aligned_cols=65 Identities=9% Similarity=0.148 Sum_probs=42.4
Q ss_pred cCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh----ccCChhHHHHHHHHHH
Q 011328 157 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI----HSNDDEVLTDACWALS 225 (488)
Q Consensus 157 ~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll----~~~~~~v~~~al~~L~ 225 (488)
...+.++..++....+.++++..+.++.++..... .....+.+.+...+ .+++..+...|..++.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~----~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRG----ENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH----HHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 34577888887677788999999999999887642 12233344444444 3456667666666553
No 354
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=64.45 E-value=1.2e+02 Score=29.92 Aligned_cols=78 Identities=19% Similarity=0.289 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHh
Q 011328 45 NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL 124 (488)
Q Consensus 45 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~ 124 (488)
..|..|+++|..+++.-..+....+.. +.|+..|++.. ..-|..|+.++...+...........-..+.+.|...
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~s-a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPS-ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchh-HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 457789999999988753333333322 26888899888 6777888888888876332221111011334666667
Q ss_pred hCC
Q 011328 125 LSS 127 (488)
Q Consensus 125 L~~ 127 (488)
|.+
T Consensus 177 L~~ 179 (441)
T PF12054_consen 177 LEN 179 (441)
T ss_pred HcC
Confidence 764
No 355
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=63.55 E-value=1.5e+02 Score=32.58 Aligned_cols=142 Identities=8% Similarity=0.016 Sum_probs=85.7
Q ss_pred cccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChH
Q 011328 294 TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIK 373 (488)
Q Consensus 294 ~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~ 373 (488)
++- .+.+|..++.-|+--+...|+ .+++...+..+--.|++.+..||..++.+|..+.........-.+..+-.-.
T Consensus 297 RDV-~~~IRaiCiqeLgiWi~~yP~---~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~ 372 (1048)
T KOG2011|consen 297 RDV-DPDIRAICIQELGIWIKSYPE---IFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKD 372 (1048)
T ss_pred ccC-chHHHHHHHHHHHHHHHhccH---HHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 444 788999998888877765455 3445556777777788889999999999999998764222222222334556
Q ss_pred HHHhhc-CCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH-h
Q 011328 374 PLCDLL-NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET-Y 451 (488)
Q Consensus 374 ~L~~ll-~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~-~ 451 (488)
.++.+. .+.+..|+...+..+ +..... ..+. ..-+..+-.++.+.++.++..|...+.. +
T Consensus 373 RIVeMadrd~~~~Vrav~L~~~--~~~~~~---------------g~L~-d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~ 434 (1048)
T KOG2011|consen 373 RIVEMADRDRNVSVRAVGLVLC--LLLSSS---------------GLLS-DKDILIVYSLIYDSNRRVAVAAGEFLYKKL 434 (1048)
T ss_pred HHHHHHhhhcchhHHHHHHHHH--HHHhcc---------------cccC-hhHHHHHHHHHhccCcchHHHHHHHHHHHh
Confidence 666666 233444444433222 222111 1111 1124567788888889988887777754 4
Q ss_pred cCCCCC
Q 011328 452 WVEEDE 457 (488)
Q Consensus 452 ~~~~~~ 457 (488)
++...+
T Consensus 435 ~~~~a~ 440 (1048)
T KOG2011|consen 435 FERVAN 440 (1048)
T ss_pred hccccc
Confidence 444444
No 356
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=63.51 E-value=1.8e+02 Score=29.88 Aligned_cols=161 Identities=18% Similarity=0.171 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHHHhcCCCchhhHHHH---hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHH
Q 011328 88 PQLQFEAAWALTNIASGTSENTRVVI---DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL 164 (488)
Q Consensus 88 ~~v~~~a~~~L~~l~~~~~~~~~~~~---~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 164 (488)
.+.+.-|+.+|.-+....+-.-.... ....+..++..+. .++..+..++++|.|+..+ +..++.+... ...++
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~ 633 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR--LESIL 633 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHh
Confidence 46666777777666653322222211 1224444444444 4567778899999999887 4445555442 23333
Q ss_pred HHhc---ccccHhHHHHHHHHHHHhhc--CCCCCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHH
Q 011328 165 AQFN---EHAKLSMLRNATWTLSNFCR--GKPQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAV 238 (488)
Q Consensus 165 ~ll~---~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~~~l~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~ 238 (488)
..+. ..++..++........|++- .....+.....-+...+..++.. ++-+....++.+|++++..+....+ +
T Consensus 634 ~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~-~ 712 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQ-L 712 (745)
T ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHH-H
Confidence 2221 12233343333322233221 11111111112222222233322 2344566777888888877654433 4
Q ss_pred HHhCCHHHHHHhcCC
Q 011328 239 IEAGVCPRLVELLRH 253 (488)
Q Consensus 239 ~~~~~l~~L~~lL~~ 253 (488)
.+.--+..+.+-+++
T Consensus 713 A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 713 AKNRSVDSIAKKLKE 727 (745)
T ss_pred HHhcCHHHHHHHHHH
Confidence 444445666655544
No 357
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.36 E-value=2.2e+02 Score=30.76 Aligned_cols=94 Identities=16% Similarity=0.063 Sum_probs=70.0
Q ss_pred CChHHHHHHhcccchhhHHHHHHHHHHHHh---cCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCH
Q 011328 284 QALPCLLDLLTQNYKKSIKKEACWTISNIT---AGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN 360 (488)
Q Consensus 284 ~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~---~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 360 (488)
.++..-..+|.++ +..+|..++.++.-.. ...++..-.++. ...|.++..+..+++-+...|+.++.++...++.
T Consensus 803 kIl~r~~~~LS~e-~l~irvkaLdvl~~gl~~La~~~n~LlPlvh-q~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 803 KILGRGIHLLSHE-SLRIRVKALDVLSLGLPLLATYHNLLLPLVH-QTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHHhcch-hHHHHHHHHHHHHhccHHHhccchhHhHHHH-hhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhh
Confidence 4667777788888 8999999998887433 233443434443 5899999999999999999999999999987765
Q ss_pred HHHHHHHHCCChHHHHhhcC
Q 011328 361 EQIKFLVSQGCIKPLCDLLN 380 (488)
Q Consensus 361 ~~~~~l~~~~~i~~L~~ll~ 380 (488)
-...++.+ ++++.+..++.
T Consensus 881 Fv~sR~l~-dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 881 FVASRFLE-DVLPWLKHLCQ 899 (1014)
T ss_pred HHHHHHHH-HHHHHHHHHHH
Confidence 55666555 67777775554
No 358
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=62.81 E-value=1.4e+02 Score=28.10 Aligned_cols=185 Identities=13% Similarity=0.154 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHh-cC---CCCcchHhH-HHHHHhHhhc----CCchhhHHHhhCCC
Q 011328 215 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LR---HPSPSVLIP-ALRTVGNIVT----GDDMQTQCIINHQA 285 (488)
Q Consensus 215 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~---~~~~~v~~~-a~~~L~~l~~----~~~~~~~~~~~~~~ 285 (488)
.++...+..+.......++. +. +....++.++.. |. +..|..|.. ++.+++.++. ........+++ .+
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~-~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~v 118 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDP-EE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-AV 118 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-H-HH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHhccCCH-HH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-HH
Confidence 34556666666655544433 22 333666666653 32 233444432 3333333332 22233333433 46
Q ss_pred hHHHHHHhcccc--hhhHHHHHHHHHHHHhcCCHHHHHHHHH---cCChHHHHHHHhcCChhHHHHHHHHHHHhccCC--
Q 011328 286 LPCLLDLLTQNY--KKSIKKEACWTISNITAGNVNQIQAIIE---AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG-- 358 (488)
Q Consensus 286 ~~~L~~lL~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-- 358 (488)
+...+.++.... -|+.|..-...+..+.....+..-.+-. ..++..++..+++.+.++...++.++..+..+.
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 666777775432 4788888777777776642222211100 124666777788889999999999998887543
Q ss_pred -CHHHHHHHHHCCChHHHHhhcC----CCCHHHHHHHHHHHHHHHHhhh
Q 011328 359 -SNEQIKFLVSQGCIKPLCDLLN----CPDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 359 -~~~~~~~l~~~~~i~~L~~ll~----~~~~~v~~~al~~L~~l~~~~~ 402 (488)
+++....+.+.-.++.|.+++. ..+...-......|.+++...+
T Consensus 199 ~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve 247 (319)
T PF08767_consen 199 TNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVE 247 (319)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHH
Confidence 3456666666555555555443 3333333444466777775533
No 359
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.72 E-value=42 Score=33.10 Aligned_cols=69 Identities=10% Similarity=0.044 Sum_probs=57.5
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC--CHHHHHHHHHHHHH
Q 011328 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP--DPRIVTVCLEGLEN 396 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~al~~L~~ 396 (488)
++..|.+-+.+.++.++..|+..|-.++.++...+...+.+.+++.-++.+.+.. +.+|+..++..|..
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 5666777788888899999999999999999888888899999999999988854 56788888876653
No 360
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.49 E-value=2.9e+02 Score=31.81 Aligned_cols=153 Identities=16% Similarity=0.142 Sum_probs=85.0
Q ss_pred hHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHH
Q 011328 286 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKF 365 (488)
Q Consensus 286 ~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 365 (488)
+..+..+..++...++|..++..+......+.-.....-..++-..+.+++.+.+.++++.|+.+|+-+.....-....
T Consensus 1528 l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~~~- 1606 (1710)
T KOG1851|consen 1528 LRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQFVS- 1606 (1710)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccccccch-
Confidence 3344433334447888888777766555421111122223345666778888888899999999999998755221111
Q ss_pred HHHCCChHHHHhhcC--CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHH
Q 011328 366 LVSQGCIKPLCDLLN--CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK 443 (488)
Q Consensus 366 l~~~~~i~~L~~ll~--~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~ 443 (488)
.-.+....... +.+......+..+|+.++-..+..-. .-+ .+.+..+-..... ..-+++.
T Consensus 1607 ----~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP-----------~wi--p~~L~~Ls~fa~e-~~~i~~t 1668 (1710)
T KOG1851|consen 1607 ----DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVP-----------LWI--PKPLMNLSSFARE-SAAIKQT 1668 (1710)
T ss_pred ----HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccch-----------hhh--HHHHHHHHhhcCC-chHHHHH
Confidence 11122222222 23334445577788888776654321 111 1122333333333 3668889
Q ss_pred HHHHHHHhcCCCCC
Q 011328 444 AVKILETYWVEEDE 457 (488)
Q Consensus 444 a~~~l~~~~~~~~~ 457 (488)
+.+.+..+-..-.|
T Consensus 1669 vkktvseFrrth~D 1682 (1710)
T KOG1851|consen 1669 VKKTVSEFRRTHAD 1682 (1710)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999887766555
No 361
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=62.33 E-value=2.1e+02 Score=30.76 Aligned_cols=40 Identities=20% Similarity=0.129 Sum_probs=32.8
Q ss_pred hHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328 150 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 150 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
..+.+.+...++.++.++....++.++.+|...|+.+.+.
T Consensus 182 Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~ 221 (838)
T KOG2073|consen 182 VIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRL 221 (838)
T ss_pred HHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhc
Confidence 4455666778999999998777888999999999888776
No 362
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=62.18 E-value=48 Score=25.22 Aligned_cols=80 Identities=16% Similarity=0.096 Sum_probs=52.3
Q ss_pred CChHHHHHHhcccc---hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCC
Q 011328 284 QALPCLLDLLTQNY---KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGG 358 (488)
Q Consensus 284 ~~~~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~ 358 (488)
|++..+.+.+.+.. ...-|+.+..++..+..-....+ ..+.|.++.+|++. .++++..|+.+...+...-
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i-----~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHI-----SSALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 44555566665542 33458888888888876222221 12567777777765 6779999999999888766
Q ss_pred CHHHHHHHHH
Q 011328 359 SNEQIKFLVS 368 (488)
Q Consensus 359 ~~~~~~~l~~ 368 (488)
+.+....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T smart00802 86 KEEELGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 6655555544
No 363
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=62.15 E-value=72 Score=24.95 Aligned_cols=100 Identities=22% Similarity=0.243 Sum_probs=60.5
Q ss_pred cCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhc---CCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccc
Q 011328 338 NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL---NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVN 414 (488)
Q Consensus 338 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll---~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~ 414 (488)
+++.......+.-|+..+... ..... +++.|..-| +..++.++..++..|..|+..+...
T Consensus 14 ~d~~gp~~~~l~eIa~~t~~~--~~~~~-----I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~---------- 76 (125)
T PF01417_consen 14 NDPWGPPGKLLAEIAQLTYNS--KDCQE-----IMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSER---------- 76 (125)
T ss_dssp SSSSS--HHHHHHHHHHTTSC--HHHHH-----HHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HH----------
T ss_pred CCCCCcCHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHH----------
Confidence 334445556667777777654 33333 366666666 5667888899999999999888754
Q ss_pred hHHHHHH-hhccHHHHHHhhc--C----CCHHHHHHHHHHHHHhcCCC
Q 011328 415 LFAQAID-DAEGLEKIENLQS--H----DNTEIYEKAVKILETYWVEE 455 (488)
Q Consensus 415 ~~~~~l~-~~g~~~~L~~l~~--~----~~~~v~~~a~~~l~~~~~~~ 455 (488)
+...++ ....++.+..+.. . ....|+.+|..+++-+.+++
T Consensus 77 -~~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d~~ 123 (125)
T PF01417_consen 77 -FVDELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLNDDE 123 (125)
T ss_dssp -HHHHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTSHH
T ss_pred -HHHHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCCcc
Confidence 444443 3334444544433 1 12359999999998776643
No 364
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=61.94 E-value=1.2e+02 Score=27.20 Aligned_cols=101 Identities=20% Similarity=0.182 Sum_probs=56.7
Q ss_pred CCCHHHHHHhhCCCCHH--------HHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccc-ccHhHHHHHHHHHHH
Q 011328 115 HGAVPIFVRLLSSPTDD--------VREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSN 185 (488)
Q Consensus 115 ~g~i~~L~~~L~~~~~~--------v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~L~~ 185 (488)
...++.++++++.++.. +-+....+++.++. |-+..+.+++.+. -+.-++..|+.+|..
T Consensus 72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~------------G~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD------------GDIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC------------CCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 35689999999764432 22223333333333 4456666666432 356688899999999
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHh
Q 011328 186 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 227 (488)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l 227 (488)
+....+..+.....-+-..+-..+...+..+....+..+..+
T Consensus 140 l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL 181 (249)
T PF06685_consen 140 LVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLVADICDL 181 (249)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhc
Confidence 998876555444444444444445444444334333333333
No 365
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=61.80 E-value=48 Score=25.19 Aligned_cols=80 Identities=19% Similarity=0.118 Sum_probs=52.8
Q ss_pred CChHHHHHHhcc---cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCC
Q 011328 284 QALPCLLDLLTQ---NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGG 358 (488)
Q Consensus 284 ~~~~~L~~lL~~---~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~ 358 (488)
|++..+.+.+.+ ..+..-|+.+...+..+..-..+... .+.|.++.+|+.. .++++..|+.+...+...-
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 344555555544 33667888999999988873233222 2566677777764 5589999999999888776
Q ss_pred CHHHHHHHHH
Q 011328 359 SNEQIKFLVS 368 (488)
Q Consensus 359 ~~~~~~~l~~ 368 (488)
+.+....+.+
T Consensus 86 ~~~~l~~ll~ 95 (107)
T PF08064_consen 86 DEEDLGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 6665555443
No 366
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=61.42 E-value=1.7e+02 Score=29.18 Aligned_cols=95 Identities=18% Similarity=0.224 Sum_probs=63.3
Q ss_pred HHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhcc-CCCCccchHHHHHHhhccHHHHHHhhcC-C
Q 011328 360 NEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNM-GNTGGVNLFAQAIDDAEGLEKIENLQSH-D 436 (488)
Q Consensus 360 ~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~g~~~~L~~l~~~-~ 436 (488)
......+.+.++++.|+++|+ ..+++++..|...|..++......... ....++|...+.+.....++.|...+-. .
T Consensus 52 ~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~ 131 (475)
T PF04499_consen 52 TGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQ 131 (475)
T ss_pred HHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCC
Confidence 355667778899999999997 445778888999999998766543322 2223467888889888888888887542 2
Q ss_pred CHHHHHHHHHHHHHhcCC
Q 011328 437 NTEIYEKAVKILETYWVE 454 (488)
Q Consensus 437 ~~~v~~~a~~~l~~~~~~ 454 (488)
..-.-..+..++-.+.+.
T Consensus 132 ~~s~lvn~v~IlieLIRk 149 (475)
T PF04499_consen 132 GGSSLVNGVSILIELIRK 149 (475)
T ss_pred CcchHHHHHHHHHHHHHh
Confidence 233333444444444433
No 367
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=60.40 E-value=1.5e+02 Score=27.74 Aligned_cols=150 Identities=16% Similarity=0.107 Sum_probs=87.0
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHc-----------CChHHHHHHHh------cCChhHHHHHHHHHHHhccCCCH
Q 011328 298 KKSIKKEACWTISNITAGNVNQIQAIIEA-----------GIIGPLVNLLL------NAEFEIKKEAAWAISNATSGGSN 360 (488)
Q Consensus 298 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-----------~~l~~L~~ll~------~~~~~v~~~a~~aL~~l~~~~~~ 360 (488)
...+|..|+.++..+..++++.+..+++. .....++..|- +.|+--.-.|+.+|.++.... +
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn-~ 129 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDN-P 129 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT--H
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcC-H
Confidence 67899999999999999888888777742 11223555554 224444457888899998753 3
Q ss_pred HHHHHHHHC------------CChHHHHhhcC-----CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhh
Q 011328 361 EQIKFLVSQ------------GCIKPLCDLLN-----CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 423 (488)
Q Consensus 361 ~~~~~l~~~------------~~i~~L~~ll~-----~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 423 (488)
+.+..+.+- ..+..+..+|- ..++.++..-+..|..-+..+... ....+.+.
T Consensus 130 ~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~A-----------V~~FL~~~ 198 (312)
T PF04869_consen 130 EAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDA-----------VNDFLSEG 198 (312)
T ss_dssp HHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHH-----------HHHHHCST
T ss_pred HHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHH-----------HHHHHcCc
Confidence 444333221 11333333333 335556555555554443333322 46666666
Q ss_pred ccHHHHHHhh---cCCCHHHHHHHHHHHHHhcCCCCCCC
Q 011328 424 EGLEKIENLQ---SHDNTEIYEKAVKILETYWVEEDEDE 459 (488)
Q Consensus 424 g~~~~L~~l~---~~~~~~v~~~a~~~l~~~~~~~~~~~ 459 (488)
..++.|.+.. .+.+.-|+-.+.-+|.-+++...++.
T Consensus 199 s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef~~~~s 237 (312)
T PF04869_consen 199 SNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEFSTKDS 237 (312)
T ss_dssp THHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT-S-SC
T ss_pred chHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHhcCCCC
Confidence 6788888863 33567789999999998888775433
No 368
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=60.30 E-value=2.1e+02 Score=29.53 Aligned_cols=76 Identities=14% Similarity=0.150 Sum_probs=51.7
Q ss_pred HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC-------chhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhh
Q 011328 71 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT-------SENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGN 142 (488)
Q Consensus 71 ~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~-------~~~~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~ 142 (488)
..+-++.+++.+++++ ++++..|+..+......+ |..-+.+.. -...|..+..+ .+++.+...+.+|+-
T Consensus 46 lk~dLellVervqdpd-~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrp--hy~~Lk~i~~~~~~~n~Kk~laDIlSv 122 (878)
T KOG2005|consen 46 LKGDLELLVERVQDPD-PDLQKAALESLREEIRSSTSSMTSVPKPLKFLRP--HYGVLKEIYESMADSNLKKWLADILSV 122 (878)
T ss_pred hhhhHHHHHHHhcCCC-hHHHHHHHHHHHHHHHhcccccccCCchhhhhcc--chhHHHHHHHhccCchhHhHHHHHHHH
Confidence 3567899999999999 999999999988876532 221222221 12334444443 567888899999999
Q ss_pred hhCCCch
Q 011328 143 VAGDSPK 149 (488)
Q Consensus 143 l~~~~~~ 149 (488)
|+....+
T Consensus 123 Lamt~se 129 (878)
T KOG2005|consen 123 LAMTMSE 129 (878)
T ss_pred Hheeecc
Confidence 9865443
No 369
>PLN03205 ATR interacting protein; Provisional
Probab=60.10 E-value=1.5e+02 Score=28.29 Aligned_cols=110 Identities=12% Similarity=0.113 Sum_probs=67.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccC--CCccHHHHHHcCCHHHHHHhhc-----CCCChhHHHHHHHHHHHhcCC
Q 011328 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIE--RSPPINEVIQSGVVPRFIEFLS-----RDDFPQLQFEAAWALTNIASG 104 (488)
Q Consensus 32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~i~~L~~lL~-----~~~~~~v~~~a~~~L~~l~~~ 104 (488)
++.|+.+..-++..+.-++++.|..++..- +......-.+.+.+ .|++++. +.. +.++..|+.++.-+...
T Consensus 325 lEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWv-sLfElm~QiAv~~TE-E~VrLEAvSIMnVIlms 402 (652)
T PLN03205 325 VEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWH-SLFELMNQIASIRTE-EDVKLEALSIMNIIVMS 402 (652)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHH-HHHHHHHHHHhccch-hheeeehhhhhHHhhhc
Confidence 445566666677777778888777765432 01111111122222 2333332 334 68888999888777763
Q ss_pred C--chhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhh
Q 011328 105 T--SENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNV 143 (488)
Q Consensus 105 ~--~~~~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l 143 (488)
+ ...|+.+....+++.+-++|+. ....++..++..|.-+
T Consensus 403 sna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLL 444 (652)
T PLN03205 403 TDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLL 444 (652)
T ss_pred cchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHH
Confidence 3 2346677777888999999986 4577888888766655
No 370
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=59.92 E-value=2.5e+02 Score=30.23 Aligned_cols=179 Identities=13% Similarity=0.099 Sum_probs=87.1
Q ss_pred hhchHHHHHHhhccC-ChhHHHHHHHHHHHhccC-----Cc-hhHHHHHHhCCHHHHHHhcCCC--CcchHhHHHHHHhH
Q 011328 198 TRPALPALERLIHSN-DDEVLTDACWALSYLSDG-----TN-DKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGN 268 (488)
Q Consensus 198 ~~~~~~~l~~ll~~~-~~~v~~~al~~L~~l~~~-----~~-~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~L~~ 268 (488)
....++.++.++... ++.++..+...|+.+++. .+ .....+...+.+..|+..+-.. ........+..+..
T Consensus 188 d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~s~s~lVs~i~vlI~ 267 (838)
T KOG2073|consen 188 DQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGTSLSVLVSGIIVLIS 267 (838)
T ss_pred hHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCcchhhHHHHHHHHHH
Confidence 367899999999753 678888888888877765 22 3445566667777776665442 12233333333322
Q ss_pred hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcC---ChHHHHHHHhcCChhHHH
Q 011328 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG---IIGPLVNLLLNAEFEIKK 345 (488)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~---~l~~L~~ll~~~~~~v~~ 345 (488)
+.. ..+..+........+.+-.... ++.+....+.++..-. .+..+.+.+.. .++.=...+..+=-..|.
T Consensus 268 ll~---~~r~~~~~~~~~~i~~q~~~~~-d~~~~~~~l~~~~p~L---~dF~~lL~~~~~~~~l~tt~g~l~pPLG~~Rl 340 (838)
T KOG2073|consen 268 LLN---PRRDTVETNSTTTILSQPPSER-DPIVLNELLGAMEPRL---GDFVQLLLEPEKLDLLETTYGELEPPLGFERL 340 (838)
T ss_pred hcC---cccccccccceeeeecCCcccc-CccchHHHHHHHHHHH---HHHHHHhcCCccchhhhhhhhccCCCcchHHH
Confidence 221 1111000000011111111122 3334444443333221 11111111111 122112222222234667
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC
Q 011328 346 EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 383 (488)
Q Consensus 346 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 383 (488)
+.+..++.+....+......+...+.++.+.+++....
T Consensus 341 ki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y~ 378 (838)
T KOG2073|consen 341 KIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEYP 378 (838)
T ss_pred HHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhcc
Confidence 77888888877666666677777777777777776543
No 371
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=59.10 E-value=1.7e+02 Score=28.13 Aligned_cols=59 Identities=24% Similarity=0.239 Sum_probs=41.3
Q ss_pred ChhHHHHHHHHHHHhcC--CCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhC
Q 011328 87 FPQLQFEAAWALTNIAS--GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 145 (488)
Q Consensus 87 ~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~ 145 (488)
++.++..--..|.-+.+ -++......++..++-.|+.+.+++++.-|+..-.+|.++.+
T Consensus 146 wphLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIyg 206 (457)
T KOG2085|consen 146 WPHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYG 206 (457)
T ss_pred chHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 35555433333333333 235556677788899999999999999999998888888865
No 372
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=58.74 E-value=46 Score=31.40 Aligned_cols=77 Identities=23% Similarity=0.349 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhccCCCccHHHHHHcC--CHHHHHHhhcCCC--ChhHHHHHHHHHHHhcCCCchhhHHH------HhC
Q 011328 46 IQLDATTQFRKLLSIERSPPINEVIQSG--VVPRFIEFLSRDD--FPQLQFEAAWALTNIASGTSENTRVV------IDH 115 (488)
Q Consensus 46 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~--~i~~L~~lL~~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~------~~~ 115 (488)
+|+.|+..+..+. .+ ......+...+ ++..|+++++.++ ...+|..|+.+|..++.......+.+ +.+
T Consensus 238 iRllAi~~l~~~~-~~-~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~H 315 (329)
T PF06012_consen 238 IRLLAIANLVYIH-PE-SQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSH 315 (329)
T ss_pred HHHHHHHHHHhhC-CC-HHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCc
Confidence 3444444444432 22 44556666655 9999999998654 36899999999999998665555443 345
Q ss_pred CCHHHHHHh
Q 011328 116 GAVPIFVRL 124 (488)
Q Consensus 116 g~i~~L~~~ 124 (488)
|++..+++-
T Consensus 316 GiL~~llR~ 324 (329)
T PF06012_consen 316 GILPQLLRK 324 (329)
T ss_pred ccHHHHHHH
Confidence 667666653
No 373
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=58.12 E-value=49 Score=23.21 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=29.2
Q ss_pred HHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 011328 417 AQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET 450 (488)
Q Consensus 417 ~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~ 450 (488)
.+.+...+.-..+..+..|++++|+..|..++..
T Consensus 35 ~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~ 68 (75)
T smart00509 35 VDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKS 68 (75)
T ss_pred HHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6777778877889999999999999999998864
No 374
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=57.33 E-value=13 Score=28.05 Aligned_cols=43 Identities=28% Similarity=0.319 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHH
Q 011328 91 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 134 (488)
Q Consensus 91 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~ 134 (488)
....+..+..++. .|+.-..+++.|+++.|+.+|.+++.++..
T Consensus 63 Ld~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 63 LDEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 3456777888888 788888999999999999999998877653
No 375
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=56.81 E-value=2.6e+02 Score=29.46 Aligned_cols=102 Identities=14% Similarity=0.210 Sum_probs=71.1
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChh
Q 011328 117 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 196 (488)
Q Consensus 117 ~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 196 (488)
+|+.|..+-..+-++++..++.++..+....|+-... .+..+++.+ .+.+..+...|.+.|.+|....|+....
T Consensus 305 fievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKl-GDpqnKiaskAsylL~~L~~~HPnMK~V 378 (988)
T KOG2038|consen 305 FIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKL-GDPQNKIASKASYLLEGLLAKHPNMKIV 378 (988)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhc-CCcchhhhhhHHHHHHHHHhhCCcceee
Confidence 4566666666677899999999999998888764333 456788888 6677788889999999998887777665
Q ss_pred hhhchHHHHHHhhccC--ChhHHHHHHHHHHHhc
Q 011328 197 QTRPALPALERLIHSN--DDEVLTDACWALSYLS 228 (488)
Q Consensus 197 ~~~~~~~~l~~ll~~~--~~~v~~~al~~L~~l~ 228 (488)
....+- .++-.+ +.....+++..|..+.
T Consensus 379 vi~EIe----r~~FRpn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 379 VIDEIE----RLAFRPNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred hHHHHH----HHHcccCccccceeehhhhhhhhH
Confidence 544433 333222 4455566666666554
No 376
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=56.64 E-value=1.1e+02 Score=25.27 Aligned_cols=79 Identities=13% Similarity=0.175 Sum_probs=52.8
Q ss_pred HHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHH-Hhcccc-hhhHHHHHHHHHHHHh
Q 011328 236 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD-LLTQNY-KKSIKKEACWTISNIT 313 (488)
Q Consensus 236 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~-lL~~~~-~~~v~~~a~~~L~nl~ 313 (488)
...++..+.+.+.+.+.++++.+-..+++++..+........+.-++ -+++.++. ++.++. ...-|..++.++..++
T Consensus 67 ~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele-~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 67 INLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE-VFLSHIILRILESDNSSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 34666688888888888777889999999999988643332222222 23444444 666542 2457778889999998
Q ss_pred cC
Q 011328 314 AG 315 (488)
Q Consensus 314 ~~ 315 (488)
..
T Consensus 146 ~~ 147 (168)
T PF12783_consen 146 KD 147 (168)
T ss_pred hC
Confidence 75
No 377
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=56.52 E-value=31 Score=22.12 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=29.1
Q ss_pred HHHHHhhccHHHHHHhhcC-CCHHHHHHHHHHHHH
Q 011328 417 AQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILET 450 (488)
Q Consensus 417 ~~~l~~~g~~~~L~~l~~~-~~~~v~~~a~~~l~~ 450 (488)
.+.+.+.|.-..+..+..+ ++++++..|..++.+
T Consensus 13 ~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~ 47 (53)
T PF08711_consen 13 VELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKK 47 (53)
T ss_dssp HHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHH
T ss_pred HHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 6778889988999999888 999999999999875
No 378
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=55.62 E-value=1.4e+02 Score=29.76 Aligned_cols=63 Identities=17% Similarity=0.109 Sum_probs=38.8
Q ss_pred CChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHH
Q 011328 327 GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE 395 (488)
Q Consensus 327 ~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~ 395 (488)
.++-.+.+-....|..+...+..+++.|.- .+.+..++ +++.|.-+|..+..+-++.|+..+.
T Consensus 238 rLilqf~r~f~RnDk~~c~~~~kfiahLin---q~VahEIv---~Leil~lLLe~PTddSvevaI~flk 300 (739)
T KOG2140|consen 238 RLILQFKRSFRRNDKVSCLNASKFIAHLIN---QQVAHEIV---ALEILTLLLERPTDDSVEVAIAFLK 300 (739)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHhcCCCCchHHHHHHHHH
Confidence 345555566666777777888888888863 23333333 4777777888765555555554444
No 379
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=55.55 E-value=72 Score=25.90 Aligned_cols=123 Identities=13% Similarity=0.101 Sum_probs=80.2
Q ss_pred CchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCC--chhHHHHHhcCChHHHHHHhcccccHhHHHHHHH
Q 011328 105 TSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDS--PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW 181 (488)
Q Consensus 105 ~~~~~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~ 181 (488)
+++.-+.+++..++..+.+.++. ....++...+..++-+..+- +..-..+...+.+..++..--+-.++++...-..
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 45566778888999999999987 67788888888877776432 2122345566677777766545567888888888
Q ss_pred HHHHhhcCCCCCCh--hhh--hchHH---HHHHhhccCChhHHHHHHHHHHHh
Q 011328 182 TLSNFCRGKPQPLF--EQT--RPALP---ALERLIHSNDDEVLTDACWALSYL 227 (488)
Q Consensus 182 ~L~~l~~~~~~~~~--~~~--~~~~~---~l~~ll~~~~~~v~~~al~~L~~l 227 (488)
.|..++-.-..... ... .+-+| .-+++..++|.-+|.++-..+.++
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 88888754322211 111 23334 445566678887777776665554
No 380
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=54.61 E-value=1.7e+02 Score=26.62 Aligned_cols=63 Identities=22% Similarity=0.335 Sum_probs=41.7
Q ss_pred hhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011328 27 LQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 103 (488)
Q Consensus 27 ~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~ 103 (488)
.+++.+..|...|+.+|+..+ ...+++... . ++..+.+|.|+..=. + +++...+++.|.+++.
T Consensus 10 dcl~~LkdL~r~lr~dd~~~~-~v~r~lg~~---~-------iv~~DLiPiL~~~~~--~-~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 10 DCLECLKDLKRFLRRDDEDQR-DVRRQLGEW---N-------IVQKDLIPILISYKD--D-DKLFLACLRLLVNLTW 72 (266)
T ss_pred hHHHHHHHHHHHHHHhCcchH-HHHHHHHHh---c-------hhhhhHHHHHHhccC--c-hHHHHHHHHHHHHhCC
Confidence 345778888888888777665 444444441 1 344556676655422 4 7888999999999986
No 381
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=54.38 E-value=8.2 Score=31.18 Aligned_cols=125 Identities=14% Similarity=0.182 Sum_probs=82.0
Q ss_pred CchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc--CCHHHHHHHHHcCChHHHHHHHhc-CChhHHHHHHH
Q 011328 273 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAW 349 (488)
Q Consensus 273 ~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~a~~ 349 (488)
++...+...+.+++..++++++......++...+.+++-+.. .++...-.++.++.+..++..--+ .++++...-..
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 344556677888999999999885478888888888887765 344555556666667666654332 37788888888
Q ss_pred HHHHhccCCCHHHHHHHHH--CCChHHHHh---hcCCCCHHHHHHHHHHHHHH
Q 011328 350 AISNATSGGSNEQIKFLVS--QGCIKPLCD---LLNCPDPRIVTVCLEGLENI 397 (488)
Q Consensus 350 aL~~l~~~~~~~~~~~l~~--~~~i~~L~~---ll~~~~~~v~~~al~~L~~l 397 (488)
.|..++..-+++....+.. .+-.|.+.+ ...++|.-+|.++-..+-++
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 8888886555454444433 244555544 45577777766655554443
No 382
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=53.67 E-value=43 Score=24.25 Aligned_cols=67 Identities=10% Similarity=0.067 Sum_probs=44.4
Q ss_pred hhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh----cCChhHHHHHHHHHH
Q 011328 281 INHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL----NAEFEIKKEAAWAIS 352 (488)
Q Consensus 281 ~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~----~~~~~v~~~a~~aL~ 352 (488)
.+..++.++..++.+..+.++|...+.++.++.....+. +.+ +.+.++..+. +++.++...|..++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~----i~S-GW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGEN----IKS-GWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHH----HHh-ccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 344677888888766658899999999999998753432 233 3555555554 345666666665543
No 383
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=53.58 E-value=1.6e+02 Score=32.39 Aligned_cols=137 Identities=11% Similarity=0.008 Sum_probs=88.4
Q ss_pred hcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH-HHHhcCCh
Q 011328 82 LSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD-LVLSNGAL 160 (488)
Q Consensus 82 L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~l 160 (488)
.++-. +++|..++..|+--....| ..+++...+..+=..|++.+.+||..++.+|-.|......... .......=
T Consensus 296 YRDV~-~~IRaiCiqeLgiWi~~yP---~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK 371 (1048)
T KOG2011|consen 296 YRDVD-PDIRAICIQELGIWIKSYP---EIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFK 371 (1048)
T ss_pred cccCc-hHHHHHHHHHHHHHHHhcc---HHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 34556 8999999999888877444 4566777888888899999999999999999999866321110 11111233
Q ss_pred HHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHh
Q 011328 161 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 227 (488)
Q Consensus 161 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l 227 (488)
..++.+...+-+..|+...+..+..+.... .....-+..+..++-+.++.++..+...+..-
T Consensus 372 ~RIVeMadrd~~~~Vrav~L~~~~~~~~~g-----~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k 433 (1048)
T KOG2011|consen 372 DRIVEMADRDRNVSVRAVGLVLCLLLSSSG-----LLSDKDILIVYSLIYDSNRRVAVAAGEFLYKK 433 (1048)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHhccc-----ccChhHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 456666645566777766665554443222 11123344566777777777777777766543
No 384
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=52.59 E-value=1.5e+02 Score=25.52 Aligned_cols=141 Identities=17% Similarity=0.153 Sum_probs=87.0
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHH-HHHHhhhhCCCchhHHH
Q 011328 76 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQA-VWALGNVAGDSPKCRDL 153 (488)
Q Consensus 76 ~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~-~~~~v~~~a-~~~L~~l~~~~~~~~~~ 153 (488)
..+..+..++. .+.+..|+.++.......+. ..++.+..++.. ++..+.... ..+++.+....+
T Consensus 54 ~l~~~L~~~~~-~E~~~la~~il~~~~~~~~~--------~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~~----- 119 (213)
T PF08713_consen 54 ELADELWESGY-REERYLALLILDKRRKKLTE--------EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKHP----- 119 (213)
T ss_dssp HHHHHHHCSSC-HHHHHHHHHHHHHCGGG--H--------HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHHG-----
T ss_pred HHHHHHcCCch-HHHHHHHHHHhHHHhhhhhH--------HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhH-----
Confidence 44556677777 78888888887664431110 135666666665 667777665 444555532111
Q ss_pred HHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCch
Q 011328 154 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 233 (488)
Q Consensus 154 ~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~ 233 (488)
...+.+...+ .+.++-.++.++-++...... ......+..+...+.+++.-++..+.|+|..++..+++
T Consensus 120 ----~~~~~~~~W~-~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~ 188 (213)
T PF08713_consen 120 ----EALELLEKWA-KSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPD 188 (213)
T ss_dssp ----GHHHHHHHHH-HCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HH
T ss_pred ----HHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHH
Confidence 1233444445 777777788777665544433 23345566666677788999999999999999988877
Q ss_pred hHHHHHHh
Q 011328 234 KIQAVIEA 241 (488)
Q Consensus 234 ~~~~~~~~ 241 (488)
....++..
T Consensus 189 ~v~~~l~~ 196 (213)
T PF08713_consen 189 EVLEFLQK 196 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655554
No 385
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.54 E-value=19 Score=33.55 Aligned_cols=63 Identities=8% Similarity=0.062 Sum_probs=52.8
Q ss_pred HHHHHHHhcCCCchhhHHHHhCCCHHHHHHh--hCCCCHHHHHHHHHHHhhhhCCCchhHHHHHh
Q 011328 94 AAWALTNIASGTSENTRVVIDHGAVPIFVRL--LSSPTDDVREQAVWALGNVAGDSPKCRDLVLS 156 (488)
Q Consensus 94 a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~--L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 156 (488)
..+.+++++...++..+.+.+.|+++.++.- .++.+|-+++....++.++..++.+.++.+..
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 5678999999899999999999999988774 34578999999999999999988777666543
No 386
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.15 E-value=4.5e+02 Score=30.16 Aligned_cols=198 Identities=10% Similarity=0.105 Sum_probs=103.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011328 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
.+..+++.|...|+..+..|+..|.++....+.+....+. .-......++..+++ .++|...-.++..+...-.....
T Consensus 42 el~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il-~~w~~i~~kl~~d~~-~~VR~~t~~v~s~l~t~lkk~ls 119 (1312)
T KOG0803|consen 42 ELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGIL-PEWLVIYAKLIIDED-RTVRLLTHDVFSKLLTKLKKKLS 119 (1312)
T ss_pred HHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhH-HHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567889999999999999999999987654322222111 112223345566777 89999999999988762111111
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcC--ChHHHHHHhc------------------cc
Q 011328 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG--ALMPLLAQFN------------------EH 170 (488)
Q Consensus 111 ~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~l~~L~~ll~------------------~~ 170 (488)
...+ ..++...-.-.+.+..+...|...+...... ...+......+ ....+.+.+. ..
T Consensus 120 p~LK-~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~-ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~ 197 (1312)
T KOG0803|consen 120 PFLK-SLIPPWLGGQFDLDYPVSEAAKASFKDGFAE-EKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELES 197 (1312)
T ss_pred HHHH-hhhhhhhheecccchHHHHHHHHHHHhhcCh-hhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHH
Confidence 1111 2233333223334455555555555554331 11122211111 1111111110 01
Q ss_pred ccHhHHHHHHHHHHHhhcCC-CCCChhh----h--hchHHHHHHhhccCChhHHHHHHHHHHHhccCCc
Q 011328 171 AKLSMLRNATWTLSNFCRGK-PQPLFEQ----T--RPALPALERLIHSNDDEVLTDACWALSYLSDGTN 232 (488)
Q Consensus 171 ~~~~v~~~a~~~L~~l~~~~-~~~~~~~----~--~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~ 232 (488)
....+...++.++..+.... ....... . --.-..+-+++++..+.++.+...++..++..-.
T Consensus 198 k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~ 266 (1312)
T KOG0803|consen 198 KYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDIL 266 (1312)
T ss_pred hhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhH
Confidence 12345555666665555322 1111110 1 1123456677788888999998888888876544
No 387
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=49.71 E-value=76 Score=22.27 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=29.5
Q ss_pred HHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 011328 417 AQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET 450 (488)
Q Consensus 417 ~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~ 450 (488)
.+.+.+.+.-..+..+..+++++++..|..++..
T Consensus 37 ~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~ 70 (76)
T cd00183 37 VEILKETRIGKKVNSLRKHSNEKIRKLAKALIKS 70 (76)
T ss_pred HHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6678888888889999999999999999998864
No 388
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=49.43 E-value=2.3e+02 Score=27.31 Aligned_cols=59 Identities=15% Similarity=0.219 Sum_probs=37.8
Q ss_pred HHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhC
Q 011328 66 INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS 126 (488)
Q Consensus 66 ~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~ 126 (488)
.+..++..++-.|+.+..+++ ++-|...-.+|.++...-...|..+.. ++=..+.++..
T Consensus 170 aK~yid~~FvlkLLdLFdSED-pRERe~LKT~LhrIygKfl~~r~firk-~iNNif~~FIy 228 (457)
T KOG2085|consen 170 AKKYIDQKFVLKLLDLFDSED-PREREFLKTILHRIYGKFLVHRPFIRK-SINNIFLRFIY 228 (457)
T ss_pred HHHHhhHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHH-hhcchhhhhcc
Confidence 466677788888888888888 888887777777776644444443322 22334444443
No 389
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.24 E-value=46 Score=32.86 Aligned_cols=73 Identities=11% Similarity=0.003 Sum_probs=55.9
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCC-CChhHHHHHHHHHHHhc
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-DFPQLQFEAAWALTNIA 102 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~~v~~~a~~~L~~l~ 102 (488)
+.+..|.+.+++.++.+++.|+..|-.++.+-.......+.+.++++.++.+.+.. -...||..++..|-.-.
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~ 111 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQ 111 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHH
Confidence 45666777788888899999999888777655444455777899999999999776 44789999888775543
No 390
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=47.86 E-value=34 Score=18.63 Aligned_cols=13 Identities=15% Similarity=0.557 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHH
Q 011328 300 SIKKEACWTISNI 312 (488)
Q Consensus 300 ~v~~~a~~~L~nl 312 (488)
.+|..|+++|+++
T Consensus 2 ~vR~~aa~aLg~~ 14 (30)
T smart00567 2 LVRHEAAFALGQL 14 (30)
T ss_pred HHHHHHHHHHHHc
Confidence 5789999999998
No 391
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=47.66 E-value=91 Score=29.40 Aligned_cols=65 Identities=23% Similarity=0.376 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhcCCCchhhHHHHhCC--CHHHHHHhhCC---CCHHHHHHHHHHHhhhhCCCchhHHHHH
Q 011328 90 LQFEAAWALTNIASGTSENTRVVIDHG--AVPIFVRLLSS---PTDDVREQAVWALGNVAGDSPKCRDLVL 155 (488)
Q Consensus 90 v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~~L~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 155 (488)
+|..|+.++..+.. .+.....++..+ ++..|+++++. -...++..|+.+|..++.+.....+.+.
T Consensus 238 iRllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~ 307 (329)
T PF06012_consen 238 IRLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLR 307 (329)
T ss_pred HHHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 44444444444443 566777777776 99999999986 3578999999999999987766555443
No 392
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=47.63 E-value=12 Score=22.74 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=20.0
Q ss_pred CCHHHHHHhcCCCCcchHhHHHHHH
Q 011328 242 GVCPRLVELLRHPSPSVLIPALRTV 266 (488)
Q Consensus 242 ~~l~~L~~lL~~~~~~v~~~a~~~L 266 (488)
.+...+...+.++++.+|..|+.++
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHC
Confidence 5567777888999999999988653
No 393
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=46.08 E-value=1.4e+02 Score=23.12 Aligned_cols=70 Identities=20% Similarity=0.216 Sum_probs=43.6
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC
Q 011328 74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147 (488)
Q Consensus 74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~ 147 (488)
++|.+.+.|+..+.++.+..+..+++.++...+ ..+.+++ .+++.++........ ...++.++..++...
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~-L~~~~l~-~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP-LSDEVLN-ALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC-CcHHHHH-HHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 578888899944448999999999999998333 2222221 223333333332222 477888888888544
No 394
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=45.88 E-value=24 Score=18.88 Aligned_cols=14 Identities=14% Similarity=0.404 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhc
Q 011328 301 IKKEACWTISNITA 314 (488)
Q Consensus 301 v~~~a~~~L~nl~~ 314 (488)
||..|+++|+++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 57888999998843
No 395
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=44.97 E-value=3.5e+02 Score=27.72 Aligned_cols=134 Identities=13% Similarity=0.024 Sum_probs=82.6
Q ss_pred CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChh--hhhchHHHH
Q 011328 128 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE--QTRPALPAL 205 (488)
Q Consensus 128 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~--~~~~~~~~l 205 (488)
-++.+|-.|+..|+--+..-|. .+....++.+.-..| .+.+..++.....++..|+...+..... ....+-..+
T Consensus 287 v~d~IRv~c~~~L~dwi~lvP~---yf~k~~~lry~GW~L-SDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rI 362 (740)
T COG5537 287 VDDVIRVLCSMSLRDWIGLVPD---YFRKILGLRYNGWSL-SDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRI 362 (740)
T ss_pred hhHHHHHHHHHHHHHHHhcchH---HHHhhhccccccccc-ccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 4567777777777776665553 344444555555666 6778899999999999999887665522 235566677
Q ss_pred HHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011328 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 271 (488)
Q Consensus 206 ~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 271 (488)
++++..+..-|+..++..+..+.... .++...+..+..++-+..|+-+......+.++|.
T Consensus 363 LE~~r~D~d~VRi~sik~l~~lr~lg------~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK 422 (740)
T COG5537 363 LEFLRTDSDCVRICSIKSLCYLRILG------VLSSSEILIVSSCMLDIIPDSRENIVESVESICK 422 (740)
T ss_pred HHHHhhccchhhHHHHHHHHHHHHhc------ccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 77777664448888887777664321 1222333444455555555544444444444444
No 396
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=44.86 E-value=3.4e+02 Score=27.35 Aligned_cols=144 Identities=14% Similarity=0.125 Sum_probs=83.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCC-------ChhHHHHHHHHHHHhcCC
Q 011328 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-------FPQLQFEAAWALTNIASG 104 (488)
Q Consensus 32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~-------~~~v~~~a~~~L~~l~~~ 104 (488)
+..+.+.+.++++..+..|+..|.. + .-.+. .+|.++.++..+- +-......++.+..|..
T Consensus 209 y~~It~a~~g~~~~~r~eAL~sL~T---D---sGL~~-----LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~- 276 (576)
T KOG2549|consen 209 YKEITEACTGSDEPLRQEALQSLET---D---SGLQQ-----LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD- 276 (576)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhhcc---C---ccHHH-----HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc-
Confidence 3456667777888888777766654 1 11222 4566776665432 24556666677777776
Q ss_pred CchhhHHHHhCCCHHHHHHhhCC----------CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccc-ccH
Q 011328 105 TSENTRVVIDHGAVPIFVRLLSS----------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKL 173 (488)
Q Consensus 105 ~~~~~~~~~~~g~i~~L~~~L~~----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~ 173 (488)
++...-.-.-+.++|.++.++-+ ....+|..|+..+..++.+-...-.. ....++..+.+.+.+. ...
T Consensus 277 Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~ 355 (576)
T KOG2549|consen 277 NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPL 355 (576)
T ss_pred CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCc
Confidence 66655444444567888876533 35679999999999988654332222 3333455555555333 233
Q ss_pred hHHHHHHHHHHHhhc
Q 011328 174 SMLRNATWTLSNFCR 188 (488)
Q Consensus 174 ~v~~~a~~~L~~l~~ 188 (488)
....-++..|..|..
T Consensus 356 st~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 356 STHYGAIAGLSELGH 370 (576)
T ss_pred hhhhhHHHHHHHhhh
Confidence 444444455544443
No 397
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.65 E-value=3.9e+02 Score=27.87 Aligned_cols=230 Identities=10% Similarity=0.098 Sum_probs=123.3
Q ss_pred hHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCCchhHHHH
Q 011328 160 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAV 238 (488)
Q Consensus 160 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~ 238 (488)
++.+.+.|..+.|+..+..|-.+|..++.+. ..+....-++..+ .+--+.-|..+|..+....... ...
T Consensus 7 Le~lCk~LY~s~D~~~R~~AE~~L~e~s~sp---------eclskCqlll~~gs~pYs~mlAst~L~Klvs~~t~l-pl~ 76 (1082)
T KOG1410|consen 7 LESLCKDLYESTDPTARHRAEKALAELSESP---------ECLSKCQLLLERGSYPYSQMLASTCLMKLVSRKTPL-PLE 76 (1082)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHccCH---------HHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCC-cHH
Confidence 4566777767889999999999999988774 4566666666654 3444555666777666443211 222
Q ss_pred HHhCCHHHHHHhcCCCCcchHh----HHHHHHhHhhcCC---chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011328 239 IEAGVCPRLVELLRHPSPSVLI----PALRTVGNIVTGD---DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 311 (488)
Q Consensus 239 ~~~~~l~~L~~lL~~~~~~v~~----~a~~~L~~l~~~~---~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n 311 (488)
.+.++-..+++.+....|.... .-+..++.++... ....+..+. +.+..+.+.++.. +.+-..-++.+|..
T Consensus 77 qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FR-d~v~~~~kfl~~~-~ve~~~igv~iLsq 154 (1082)
T KOG1410|consen 77 QRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFR-DPVDDVTKFLQMD-NVEHCIIGVQILSQ 154 (1082)
T ss_pred HHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhh-hhHHHHHHHhccC-chHHHHHHHHHHHH
Confidence 2335556677777665554433 3334444444321 111111111 4556667777666 55555555566665
Q ss_pred Hhc------C---CHHHHHH---HHHc---CChHHHHHHHhcC-----ChhHHHHHHHHHHHhccCC-------------
Q 011328 312 ITA------G---NVNQIQA---IIEA---GIIGPLVNLLLNA-----EFEIKKEAAWAISNATSGG------------- 358 (488)
Q Consensus 312 l~~------~---~~~~~~~---l~~~---~~l~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~------------- 358 (488)
+.. + ..++++. +.+. .++..-+.+|+.. +.+-+..-...+.++..++
T Consensus 155 LvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEs 234 (1082)
T KOG1410|consen 155 LVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDES 234 (1082)
T ss_pred HHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhccccccccccccc
Confidence 543 0 1111111 1111 1233333444432 1222222222223332111
Q ss_pred ---------CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011328 359 ---------SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 401 (488)
Q Consensus 359 ---------~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 401 (488)
...-+..+.+...+..+.++.++-.++..+.++.+|..+...-
T Consensus 235 sed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvR 286 (1082)
T KOG1410|consen 235 SEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVR 286 (1082)
T ss_pred cccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHH
Confidence 1123445566677888999999888888899999988886543
No 398
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=43.78 E-value=2.7e+02 Score=25.85 Aligned_cols=103 Identities=12% Similarity=0.159 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHhhcCCCCC----------------------ChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhcc
Q 011328 174 SMLRNATWTLSNFCRGKPQP----------------------LFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSD 229 (488)
Q Consensus 174 ~v~~~a~~~L~~l~~~~~~~----------------------~~~~~~~~~~~l~~ll~~~--~~~v~~~al~~L~~l~~ 229 (488)
.++.+-+..+.++|...+.. ......|.+..+++.+... +...+.....++-...+
T Consensus 47 ~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLR 126 (303)
T PF12463_consen 47 ILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESELNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLR 126 (303)
T ss_pred HHHHHHHHHHHHHhccccchhHHHHHhcCccccccccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHc
Confidence 46677777777777622111 1112257777777777643 66778888888888887
Q ss_pred CCch--hHHHHHHhCCHHHHHHhcCCCC---cchHhHHHHHHhHhhcCCchh
Q 011328 230 GTND--KIQAVIEAGVCPRLVELLRHPS---PSVLIPALRTVGNIVTGDDMQ 276 (488)
Q Consensus 230 ~~~~--~~~~~~~~~~l~~L~~lL~~~~---~~v~~~a~~~L~~l~~~~~~~ 276 (488)
..+. ....+.+.|+++.++..+-++. ..+.......||.+...+...
T Consensus 127 g~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK~n~~~ 178 (303)
T PF12463_consen 127 GATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIKFNRDA 178 (303)
T ss_pred CCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHCCCHHH
Confidence 6554 3345777899999988876542 358888999999999987644
No 399
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=43.65 E-value=87 Score=25.40 Aligned_cols=47 Identities=28% Similarity=0.195 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC
Q 011328 90 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147 (488)
Q Consensus 90 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~ 147 (488)
-+..|+..|+.+..+ --+..|+.+|.+++.++...|+.+|.+-.---
T Consensus 79 s~~~Av~LLGtM~GG-----------YNV~~LI~~L~~~d~~lA~~Aa~aLk~TlLvy 125 (154)
T PF11791_consen 79 SPAEAVELLGTMLGG-----------YNVQPLIDLLKSDDEELAEEAAEALKNTLLVY 125 (154)
T ss_dssp -HHHHHHHHTTS-SS-----------TTHHHHHHGG--G-TTTHHHHHHHHHT--TTC
T ss_pred CHHHHHHHHhhccCC-----------CcHHHHHHHHcCCcHHHHHHHHHHHHhhHHHH
Confidence 355666666666553 23899999999999999999999998865433
No 400
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.18 E-value=1.1e+02 Score=32.95 Aligned_cols=97 Identities=14% Similarity=0.099 Sum_probs=66.9
Q ss_pred hhchHHHHHHhhccCChhHHHHHHHHHHHhc---cCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCc
Q 011328 198 TRPALPALERLIHSNDDEVLTDACWALSYLS---DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 274 (488)
Q Consensus 198 ~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~---~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 274 (488)
...++....++|.+++..+|..++.++..-. ...++..-..+. ...+.++..+...++-+...|+.++.+++....
T Consensus 801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvh-q~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sg 879 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVH-QTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSG 879 (1014)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHH-hhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhh
Confidence 3566677778888999999999999887533 223222222333 567889999999999999999999999998766
Q ss_pred hhhHHHhhCCChHHHHHHhcc
Q 011328 275 MQTQCIINHQALPCLLDLLTQ 295 (488)
Q Consensus 275 ~~~~~~~~~~~~~~L~~lL~~ 295 (488)
.....-+-..++|.+-.++++
T Consensus 880 DFv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 880 DFVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 544333333455555554443
No 401
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=40.77 E-value=59 Score=28.16 Aligned_cols=77 Identities=12% Similarity=0.170 Sum_probs=54.4
Q ss_pred CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHH
Q 011328 242 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ 321 (488)
Q Consensus 242 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 321 (488)
...+.+...+.++++-+++.++.++...... .... .++..+...+.++ +..++....|+|..++..+++...
T Consensus 120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--~~~~-----~~l~~~~~~~~d~-~~~vq~ai~w~L~~~~~~~~~~v~ 191 (213)
T PF08713_consen 120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRK--EDFD-----ELLEIIEALLKDE-EYYVQKAIGWALREIGKKDPDEVL 191 (213)
T ss_dssp GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--CHHH-----HHHHHHHHCTTGS--HHHHHHHHHHHHHHCTT-HHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--cCHH-----HHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHhCHHHHH
Confidence 4567778888899988888887776555543 1111 2344555566777 889999999999999998888777
Q ss_pred HHHHc
Q 011328 322 AIIEA 326 (488)
Q Consensus 322 ~l~~~ 326 (488)
.+++.
T Consensus 192 ~~l~~ 196 (213)
T PF08713_consen 192 EFLQK 196 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 402
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=40.66 E-value=2.6e+02 Score=24.71 Aligned_cols=129 Identities=13% Similarity=0.106 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCC---------C---------HHHHHHHHHHHhhhhCCCch
Q 011328 88 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP---------T---------DDVREQAVWALGNVAGDSPK 149 (488)
Q Consensus 88 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~---------~---------~~v~~~a~~~L~~l~~~~~~ 149 (488)
......++..+..+.. +++....+...++++.+...|..- + ..+...-...|+.++....+
T Consensus 78 ~~y~~vGc~L~~~Ll~-~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~G 156 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLS-SPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNG 156 (226)
T ss_pred hHHHHHHHHHHHHHHc-CcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhH
Confidence 4555667777888887 677777777888888888876542 1 12333445677888766554
Q ss_pred hHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 011328 150 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 228 (488)
Q Consensus 150 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~ 228 (488)
.+.+.+.+....+..+....+.+.+... .+.++=.. .....=..+-+.|.+++..+|..|...|+.+.
T Consensus 157 -l~lLe~~~if~~l~~i~~~~~~~~l~kl---il~~LDY~-------~~~~~R~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 157 -LKLLERWNIFTMLYHIFSLSSRDDLLKL---ILSSLDYS-------VDGHPRIILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred -HHHHHHCCHHHHHHHHHccCchHHHHHH---HHhhCCCC-------CccHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 5667777888888888744333332222 33443111 11122234557788889999999998888764
No 403
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=40.40 E-value=42 Score=25.47 Aligned_cols=41 Identities=20% Similarity=0.309 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 011328 303 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK 344 (488)
Q Consensus 303 ~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 344 (488)
......+..++.. |+....+++.|+++.|+.+|.+.+.++.
T Consensus 64 d~~Ik~l~~La~~-P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 64 DEEIKKLSVLATA-PELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHccCC-hhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 3455666667665 7888889999999999999999877764
No 404
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=38.78 E-value=4.3e+02 Score=26.71 Aligned_cols=141 Identities=12% Similarity=0.090 Sum_probs=85.7
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccc-------ccHhHHHHHHHHHHHhhcCCC
Q 011328 119 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-------AKLSMLRNATWTLSNFCRGKP 191 (488)
Q Consensus 119 ~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-------~~~~v~~~a~~~L~~l~~~~~ 191 (488)
..+.+.+...++..+..|+..|.+ + +.... .++.++.++... .+-....+....++.|..+..
T Consensus 210 ~~It~a~~g~~~~~r~eAL~sL~T---D-sGL~~------LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~ 279 (576)
T KOG2549|consen 210 KEITEACTGSDEPLRQEALQSLET---D-SGLQQ------LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPN 279 (576)
T ss_pred HHHHHHHhcCCHHHHHHHHHhhcc---C-ccHHH------HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCc
Confidence 334444444666666666655543 2 11211 245555555321 355667778888888888875
Q ss_pred CCChhhhhchHHHHHHhhc----------cCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC--CcchH
Q 011328 192 QPLFEQTRPALPALERLIH----------SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVL 259 (488)
Q Consensus 192 ~~~~~~~~~~~~~l~~ll~----------~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~ 259 (488)
-.-......++|.++.++- ++.+.+|.-|+..+..++....+.... ....+...+.+.+.++ .....
T Consensus 280 i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~ 358 (576)
T KOG2549|consen 280 IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTH 358 (576)
T ss_pred cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhh
Confidence 5555566777887776653 234678888999999988776555443 4556777777777664 34455
Q ss_pred hHHHHHHhHhh
Q 011328 260 IPALRTVGNIV 270 (488)
Q Consensus 260 ~~a~~~L~~l~ 270 (488)
.-++..|..+.
T Consensus 359 YGai~gL~~lg 369 (576)
T KOG2549|consen 359 YGAIAGLSELG 369 (576)
T ss_pred hhHHHHHHHhh
Confidence 55555555554
No 405
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=37.57 E-value=5.3e+02 Score=27.42 Aligned_cols=143 Identities=8% Similarity=0.107 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHH-------HCC--
Q 011328 300 SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLV-------SQG-- 370 (488)
Q Consensus 300 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~-------~~~-- 370 (488)
+...++++++..+....-.....+-...-+-.+...+....+.+...++..|..++..........+. +..
T Consensus 207 k~~~eiIrClka~mNn~~Gl~~vL~~e~~lllla~aldpr~pnmm~dvvkllsalciV~ee~~~ekvl~aiT~~ae~~~v 286 (1102)
T KOG1924|consen 207 KNLQEIIRCLKAFMNNKFGLVLVLRRERSLLLLARALDPREPNMMTDVVKLLSALCIVGEENGLEKVLEAITTIAEAKPV 286 (1102)
T ss_pred HHHHHHHHHHHHHhccccceeeeecCCccHHHHHHhcCccCccHHHHHHHHHHHHheeehhhHHHHHHHHHHHHHhhcch
Confidence 44556666666665431111111111122444444555555566666666666666544322222221 111
Q ss_pred -ChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHH
Q 011328 371 -CIKPLCDLLNCP-DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 448 (488)
Q Consensus 371 -~i~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l 448 (488)
-...+++.|+.. +......++..+..+......... .-+.+..+.+.|.-+.|.++....|... +...+++
T Consensus 287 eRF~piv~gl~~~e~~~l~vacmq~INal~t~p~dldf------RlhlR~E~mr~gL~~~l~~l~~i~n~~l-dvqlkvf 359 (1102)
T KOG1924|consen 287 ERFRPIVEGLDFLEKQQLQVACMQFINALVTSPSDLDF------RLHLRSEFMRDGLHKYLPDLTEINNDIL-DVQLKVF 359 (1102)
T ss_pred hhhhhHHHHHhccchHHHHHHHHHHHHHhcCCHHHhhH------HHHHHHHHHHHhHHHHHHHhhhhccHHH-HHHHHHH
Confidence 244556666654 455555566655555433322211 1124566778888899999877755543 4445544
Q ss_pred H
Q 011328 449 E 449 (488)
Q Consensus 449 ~ 449 (488)
+
T Consensus 360 d 360 (1102)
T KOG1924|consen 360 D 360 (1102)
T ss_pred h
Confidence 3
No 406
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.72 E-value=7.1e+02 Score=28.66 Aligned_cols=111 Identities=12% Similarity=0.186 Sum_probs=66.4
Q ss_pred HHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHH
Q 011328 244 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 323 (488)
Q Consensus 244 l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 323 (488)
+..+++-|...++..+..|+..++.+....+.....-+-......+.++..+. +..||...-.++..+...-.......
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~-~~~VR~~t~~v~s~l~t~lkk~lsp~ 121 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDE-DRTVRLLTHDVFSKLLTKLKKKLSPF 121 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45566667777889999999999999875443222111111223344455566 89999999999999887533333333
Q ss_pred HHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011328 324 IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 324 ~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
.+. +++...-.-.+.+..|-..|...+.....
T Consensus 122 LK~-li~~wl~~~~d~~~~vs~aa~~sf~~~f~ 153 (1312)
T KOG0803|consen 122 LKS-LIPPWLGGQFDLDYPVSEAAKASFKDGFA 153 (1312)
T ss_pred HHh-hhhhhhheecccchHHHHHHHHHHHhhcC
Confidence 332 34433333333455666666666666554
No 407
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=36.71 E-value=2.5e+02 Score=23.32 Aligned_cols=74 Identities=14% Similarity=0.083 Sum_probs=52.1
Q ss_pred cCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011328 157 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 231 (488)
Q Consensus 157 ~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 231 (488)
.+.+...+..+.+..|..+....+.++.+..... .-.......++|.+..+|.+..+.-...++..+..+...-
T Consensus 27 ~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~-~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f 100 (164)
T PF13925_consen 27 RNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKPE-KWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKF 100 (164)
T ss_pred cCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCcC-cccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 3445555555556677888777777776544432 3344455788999999999999998999998888776543
No 408
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=36.67 E-value=4.9e+02 Score=26.74 Aligned_cols=105 Identities=10% Similarity=-0.054 Sum_probs=70.9
Q ss_pred HHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH--HHHh
Q 011328 79 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD--LVLS 156 (488)
Q Consensus 79 ~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~ 156 (488)
+.-..+-+ +.+|..+...++--...-|+. +.+..++...-..|.+.+..+|.....++-.++...|.... .+.+
T Consensus 281 vsRy~Dv~-d~IRv~c~~~L~dwi~lvP~y---f~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~e 356 (740)
T COG5537 281 VSRYIDVD-DVIRVLCSMSLRDWIGLVPDY---FRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVE 356 (740)
T ss_pred hhhccchh-HHHHHHHHHHHHHHHhcchHH---HHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 33444555 778888888887776644443 44444677777788889999999999999999987775320 1111
Q ss_pred cCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328 157 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 157 ~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
..-..+++.+..+.+. |+..+...+..+..-
T Consensus 357 -RFk~rILE~~r~D~d~-VRi~sik~l~~lr~l 387 (740)
T COG5537 357 -RFKDRILEFLRTDSDC-VRICSIKSLCYLRIL 387 (740)
T ss_pred -HHHHHHHHHHhhccch-hhHHHHHHHHHHHHh
Confidence 2344666777555565 888888877776543
No 409
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=35.98 E-value=4.1e+02 Score=25.62 Aligned_cols=249 Identities=10% Similarity=0.105 Sum_probs=116.6
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh-
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN- 108 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~- 108 (488)
+...-+++..+. ....+..|...+.+.-..- ++.. ..++..=+.+..+.+ ..+|.+|++-|-.+|.++.-.
T Consensus 25 ~~y~~il~~~k~-~~k~k~lasq~ip~~fk~f-p~la-----~~a~da~~d~~ed~d-~~ir~qaik~lp~fc~~d~~~r 96 (460)
T KOG2213|consen 25 DDYEGILKAVKG-TSKEKRLASQFIPRFFKHF-PSLA-----DEAIDAQLDLCEDDD-VGIRRQAIKGLPLFCKGDALSR 96 (460)
T ss_pred HHHHHHHHHhhc-chHHHHHHHHHHHHHHhhC-chhh-----hHHHHhhhccccccc-hhhHHHHHhccchhccCchhhh
Confidence 444445555443 3333445556666655543 2222 235556667888888 899999999999998853111
Q ss_pred ----hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhh-CCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHH
Q 011328 109 ----TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA-GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL 183 (488)
Q Consensus 109 ----~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L 183 (488)
-.++.+.+-+..|..-....+..+|+.++..|..=. .-.++.-..-++..++..+-..| .+-+-+-.......|
T Consensus 97 v~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal-~dVtgeef~lfm~~L 175 (460)
T KOG2213|consen 97 VNDVLVQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKAL-EDVTGEEFTLFMDIL 175 (460)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHH-HhccHHHHHHHHHHH
Confidence 112223333444443333357788888877665432 22222222223333444444444 222223333444445
Q ss_pred HHhhcCCCCCChhhh---hchHHHHHHh--hccCChhHHHHHHHHHHHh----ccCCc-hhHHHHHHhCCHHHHHHhcCC
Q 011328 184 SNFCRGKPQPLFEQT---RPALPALERL--IHSNDDEVLTDACWALSYL----SDGTN-DKIQAVIEAGVCPRLVELLRH 253 (488)
Q Consensus 184 ~~l~~~~~~~~~~~~---~~~~~~l~~l--l~~~~~~v~~~al~~L~~l----~~~~~-~~~~~~~~~~~l~~L~~lL~~ 253 (488)
.++............ ......+..+ +.-.|+.....-+.|+..- +.+.+ ...-..+...+++. ....
T Consensus 176 ~~lk~~~~k~~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~---~fdk 252 (460)
T KOG2213|consen 176 ASLKSLQTKAGEARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPH---HFDK 252 (460)
T ss_pred HhhhcccCCCCHHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhccc---cccc
Confidence 554433311111111 1111112222 2334555555555555432 22221 11111222233332 1111
Q ss_pred CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhc
Q 011328 254 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT 294 (488)
Q Consensus 254 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~ 294 (488)
...+.+...+.+|+.++........ ...++.++++|.
T Consensus 253 l~e~rkL~lLK~lAEMss~ttaq~a----~q~Lpsi~elLk 289 (460)
T KOG2213|consen 253 LTEERKLDLLKALAEMSSYTTAQAA----RQMLPSIVELLK 289 (460)
T ss_pred chHHHHHHHHHHHHHhCccchHHHH----HHHHHHHHHHHH
Confidence 2345677788888888775532211 234566666663
No 410
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=35.85 E-value=93 Score=26.93 Aligned_cols=98 Identities=12% Similarity=0.148 Sum_probs=39.9
Q ss_pred HHHhCCCHHHHHHhhCC---CC---------------HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccccc
Q 011328 111 VVIDHGAVPIFVRLLSS---PT---------------DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAK 172 (488)
Q Consensus 111 ~~~~~g~i~~L~~~L~~---~~---------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 172 (488)
.+.+.|++..++.+++. .. .++...|...|..++.+++..+..+.+ .++.++..+....
T Consensus 38 llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~--~~~~l~~~~~~~~- 114 (207)
T PF01365_consen 38 LLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFK--HLDFLISIFMQLQ- 114 (207)
T ss_dssp HHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHH--HHH-----HHCCC-
T ss_pred HHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH--HHhHHHHHHHHhh-
Confidence 34455666666666643 11 467788999999999988877776655 2332222221111
Q ss_pred HhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcc
Q 011328 173 LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS 211 (488)
Q Consensus 173 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~ 211 (488)
...-..+..++..+..+++..........+..++.++..
T Consensus 115 ~~~~~~~~d~l~~i~~dN~~L~~~i~e~~I~~~i~ll~~ 153 (207)
T PF01365_consen 115 IGYGLGALDVLTEIFRDNPELCESISEEHIEKFIELLRK 153 (207)
T ss_dssp H-TTHHHHHHHHHHHTT----------------------
T ss_pred ccCCchHHHHHHHHHHCcHHHHHHhhHHHHHHHHHHHHH
Confidence 000123455666666665333333334446666666665
No 411
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=35.62 E-value=5.6e+02 Score=27.17 Aligned_cols=61 Identities=15% Similarity=0.121 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328 42 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 42 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
.++.+.-.++.+.....| .-.+..+++.-.++.|.+++.. +++|..|+.|+..+....-+.
T Consensus 205 ~npgl~~~cLdc~g~fVS---WIdInLIaNd~f~nLLy~fl~i---eelR~aac~cilaiVsKkMkP 265 (980)
T KOG2021|consen 205 VNPGLINSCLDCIGSFVS---WIDINLIANDYFLNLLYKFLNI---EELRIAACNCILAIVSKKMKP 265 (980)
T ss_pred CCchHHHHHHHHHHHHhh---hhhhhhhhchhHHHHHHHHHhH---HHHHHHHHHHHHHHHhcCCCh
Confidence 377777777777777765 2335666777888999998883 789999999999988744333
No 412
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=35.41 E-value=2.1e+02 Score=22.10 Aligned_cols=66 Identities=23% Similarity=0.237 Sum_probs=43.8
Q ss_pred ccHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhh-cCCCChhH-HHHHHHHHHHhcC
Q 011328 30 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFL-SRDDFPQL-QFEAAWALTNIAS 103 (488)
Q Consensus 30 ~~i~~l~~~L~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~~v-~~~a~~~L~~l~~ 103 (488)
..+|.+.+.|+ +..++.+..+.-.+..++++. ...+. ++..+++.+ ++.. +.. +..++.++..++.
T Consensus 6 ~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~--~L~~~-----~l~~l~~~i~~~~~-~~~~~~~~l~~L~~l~q 74 (121)
T PF12397_consen 6 RLLPFLLKGLKSSSSPDLQAAAYMILSVLASKV--PLSDE-----VLNALMESILKNWT-QETVQRQALICLIVLCQ 74 (121)
T ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc--CCcHH-----HHHHHHHHHHhccc-cchhHHHHHHHHHHHHH
Confidence 35788999999 788999999999999987764 22222 333343333 3322 222 4778888888886
No 413
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=33.98 E-value=97 Score=23.91 Aligned_cols=38 Identities=18% Similarity=0.326 Sum_probs=31.2
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHH
Q 011328 117 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL 155 (488)
Q Consensus 117 ~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 155 (488)
+++.|+.-|.++++++...|+.+|...|.+. .+.+.++
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v 46 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLV 46 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHH
Confidence 4789999999999999999999999999876 3444443
No 414
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=33.29 E-value=1.7e+02 Score=33.94 Aligned_cols=128 Identities=13% Similarity=0.087 Sum_probs=70.5
Q ss_pred ccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHH
Q 011328 169 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 248 (488)
Q Consensus 169 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~ 248 (488)
.+.++.++.-+......+.... .......++..|+..+-+++..-...|+.+|..++...+.....+ ...+..++
T Consensus 445 ~S~e~~v~~FG~~~Y~~lF~~f---ds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~f--a~~l~giL 519 (1426)
T PF14631_consen 445 RSKEPSVREFGSHLYKYLFKEF---DSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPF--ATFLKGIL 519 (1426)
T ss_dssp TSSSHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHT--HHHHHGGG
T ss_pred hCCCHHHHHHHHHHHHHHHhhc---cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHH--HHHHHHHH
Confidence 5567777777777666666553 122346788888888877776666889999999997554433221 12344444
Q ss_pred HhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHH
Q 011328 249 ELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 303 (488)
Q Consensus 249 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~ 303 (488)
+.+.+=+..-.+....+++.++........ -+...+.-.+-+.|.+. +...|+
T Consensus 520 D~l~~Ls~~qiR~lf~il~~La~~~~~~~s-~i~del~ivIRKQLss~-~~~~K~ 572 (1426)
T PF14631_consen 520 DYLDNLSLQQIRKLFDILCTLAFSDSSSSS-SIQDELHIVIRKQLSSS-NPKYKR 572 (1426)
T ss_dssp GGGGG--HHHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHT-S-SHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCcccch-hhHHHHHHHHHHhhcCC-cHHHHH
Confidence 555543444445567777777754322111 12223444455566666 555554
No 415
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=33.13 E-value=4.4e+02 Score=25.17 Aligned_cols=130 Identities=12% Similarity=0.112 Sum_probs=80.1
Q ss_pred HHHHHhCCHHHHHHhcCC-CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHH-hccc---c-hhhHHHHHHHHH
Q 011328 236 QAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL-LTQN---Y-KKSIKKEACWTI 309 (488)
Q Consensus 236 ~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l-L~~~---~-~~~v~~~a~~~L 309 (488)
+.+.+.+++..+..+-.. ..+.++..++..+..+....... .+....+...+.++ +... . ...+..+-+..+
T Consensus 3 Eyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p--lL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL 80 (353)
T PF10257_consen 3 EYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP--LLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELL 80 (353)
T ss_pred HHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc--cccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHH
Confidence 445666788888887655 34678888888888887643322 22344566666666 4322 1 233555555555
Q ss_pred HHHhc---CCHHHHHHHHHc--------------------------CChHHHHHHHhcCChhHHHHHHHHHHHhccCC--
Q 011328 310 SNITA---GNVNQIQAIIEA--------------------------GIIGPLVNLLLNAEFEIKKEAAWAISNATSGG-- 358 (488)
Q Consensus 310 ~nl~~---~~~~~~~~l~~~--------------------------~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-- 358 (488)
..++. .++.....+++. .++..|+.++++. -.+-..|..+|.-++...
T Consensus 81 ~~lc~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig~~Are~LLll~~l~~~ 159 (353)
T PF10257_consen 81 NTLCSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIGDFAREGLLLLMSLASE 159 (353)
T ss_pred HHHHHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHHHHHHHHHHHHHhCCCC
Confidence 55554 456655555432 1366777777776 567777888887777655
Q ss_pred CHHHHHHHHH
Q 011328 359 SNEQIKFLVS 368 (488)
Q Consensus 359 ~~~~~~~l~~ 368 (488)
++....++.+
T Consensus 160 ~~~~~~~i~~ 169 (353)
T PF10257_consen 160 DPALAQYIVE 169 (353)
T ss_pred CcHHHHHHHH
Confidence 5566666666
No 416
>PF05953 Allatostatin: Allatostatin; InterPro: IPR010276 This family consists of allatostatins, bombystatins, helicostatins, cydiastatins and schistostatin from several insect species. Allatostatins (ASTs) of the Tyr/Phe-Xaa-Phe-Gly Leu/Ile-NH2 family are a group of insect neuropeptides that inhibit juvenile hormone biosynthesis by the corpora allata [].; GO: 0005184 neuropeptide hormone activity
Probab=33.07 E-value=26 Score=14.55 Aligned_cols=6 Identities=33% Similarity=0.805 Sum_probs=3.5
Q ss_pred CCCcCC
Q 011328 483 GGFNFG 488 (488)
Q Consensus 483 ~~~~~~ 488 (488)
..|+||
T Consensus 4 ~~Y~FG 9 (11)
T PF05953_consen 4 PMYSFG 9 (11)
T ss_pred CccccC
Confidence 446665
No 417
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=32.84 E-value=3.5e+02 Score=23.91 Aligned_cols=130 Identities=18% Similarity=0.154 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCC------------C-hh----HHHHHHHHHHHhcCCCc
Q 011328 44 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD------------F-PQ----LQFEAAWALTNIASGTS 106 (488)
Q Consensus 44 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~------------~-~~----v~~~a~~~L~~l~~~~~ 106 (488)
+.....++..+..+++. ++-...+.+.++++.+.+.|..-+ + .. +-..-...|+.++. ++
T Consensus 78 ~~y~~vGc~L~~~Ll~~--~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~-~~ 154 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSS--PEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSS-TP 154 (226)
T ss_pred hHHHHHHHHHHHHHHcC--cHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhC-Ch
Confidence 44555677777777765 455666778899999988875431 0 11 22233456788887 78
Q ss_pred hhhHHHHhCCCHHHHHHhhCCCC-HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHH
Q 011328 107 ENTRVVIDHGAVPIFVRLLSSPT-DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 185 (488)
Q Consensus 107 ~~~~~~~~~g~i~~L~~~L~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~ 185 (488)
.....+-+.+++..+..+.+..+ +++. ..++.++-...+ |....++......++..++..|...|..
T Consensus 155 ~Gl~lLe~~~if~~l~~i~~~~~~~~l~---klil~~LDY~~~---------~~~R~iLsKaLt~~s~~iRl~aT~~L~~ 222 (226)
T PF14666_consen 155 NGLKLLERWNIFTMLYHIFSLSSRDDLL---KLILSSLDYSVD---------GHPRIILSKALTSGSESIRLYATKHLRV 222 (226)
T ss_pred hHHHHHHHCCHHHHHHHHHccCchHHHH---HHHHhhCCCCCc---------cHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888888999999999988743 3332 235555532222 2233444443367788999999988877
Q ss_pred hhc
Q 011328 186 FCR 188 (488)
Q Consensus 186 l~~ 188 (488)
+.+
T Consensus 223 llr 225 (226)
T PF14666_consen 223 LLR 225 (226)
T ss_pred Hhc
Confidence 653
No 418
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=32.70 E-value=2.9e+02 Score=25.40 Aligned_cols=131 Identities=15% Similarity=0.078 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC------CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChH
Q 011328 88 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM 161 (488)
Q Consensus 88 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 161 (488)
.+.|..|+.+|.+=+. . +..+|.++.++.. .+.+.....+...+.+..+..-+-+-.+ ...++
T Consensus 212 ~~~r~aAl~sLr~dsG-----l-----hQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~-hqlmP 280 (450)
T COG5095 212 EQTRDAALESLRNDSG-----L-----HQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYL-HQLMP 280 (450)
T ss_pred HHHHHHHHHHhccCcc-----H-----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHH-HHHHH
Confidence 6677777766654332 1 1235666666643 3445555555555555544322111111 12334
Q ss_pred HHHHHhc-----cc----ccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-cC-ChhHHHHHHHHHHHhcc
Q 011328 162 PLLAQFN-----EH----AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SN-DDEVLTDACWALSYLSD 229 (488)
Q Consensus 162 ~L~~ll~-----~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~-~~-~~~v~~~al~~L~~l~~ 229 (488)
.++..+. .. +.-.++..|+..+...+...+..-......+...+.+..- .+ .......|+.++..+..
T Consensus 281 SilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~k 359 (450)
T COG5095 281 SILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILSK 359 (450)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhch
Confidence 4444331 11 1234777788877777766533333333344444443332 22 23445556666655543
No 419
>PRK14051 negative regulator GrlR; Provisional
Probab=31.61 E-value=24 Score=26.24 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCccccCCCCCC--CCCCCCcC
Q 011328 459 EPLPPGDATQAGFGFAGNGLP--VPSGGFNF 487 (488)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 487 (488)
++.|.+|-++++|..+ +| +++++|||
T Consensus 59 ~ei~SVf~~eqdy~L~---i~kk~~sn~~~~ 86 (123)
T PRK14051 59 YEIPSVLNIEQDYQLV---IPKKVLSNDNNL 86 (123)
T ss_pred cccccccCccccEEEe---cchhheeCCCCe
Confidence 4689999999999775 66 88999987
No 420
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=31.43 E-value=1.3e+03 Score=29.93 Aligned_cols=296 Identities=7% Similarity=0.052 Sum_probs=144.2
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccC------CCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCC
Q 011328 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIE------RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG 104 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~ 104 (488)
.++.|+..+..++.+....+..++..+.... .......-+-.++++.+.++..++. -.-+...+..|..+...
T Consensus 985 ~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~-wy~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen 985 FLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDST-WYAKDGGVNGIKCLIES 1063 (3550)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHh-HHHHcCCCceeeeehhh
Confidence 3577888998888888877777776654321 0111111122356666667766665 24555555566666654
Q ss_pred CchhhHHHH--hCCCHHHHHHhhCCC-------CHHHHHHHHHHHhhhh-C--CCchhHHHHHhcCChHHHHHHhccccc
Q 011328 105 TSENTRVVI--DHGAVPIFVRLLSSP-------TDDVREQAVWALGNVA-G--DSPKCRDLVLSNGALMPLLAQFNEHAK 172 (488)
Q Consensus 105 ~~~~~~~~~--~~g~i~~L~~~L~~~-------~~~v~~~a~~~L~~l~-~--~~~~~~~~~~~~~~l~~L~~ll~~~~~ 172 (488)
.+ ...+. ...++..+...+... ..+.....+.-+...+ . ..++-+. -...+.+.+++..+ .+++
T Consensus 1064 ~~--~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~-~~~~~~~~~lv~eL-~npN 1139 (3550)
T KOG0889|consen 1064 MP--SLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERA-KSAMNVFSPLVLEL-FNPN 1139 (3550)
T ss_pred ch--HHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHH-cCCc
Confidence 44 22222 224555555555441 1112222222222211 1 1111111 22235677888888 6777
Q ss_pred HhHHHHHHHHHHHhhcCCCCCChhhhhchHHHH-----HHhhccCChhHHHHHHHHHHHhccCCchhHH---HHH----H
Q 011328 173 LSMLRNATWTLSNFCRGKPQPLFEQTRPALPAL-----ERLIHSNDDEVLTDACWALSYLSDGTNDKIQ---AVI----E 240 (488)
Q Consensus 173 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l-----~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~---~~~----~ 240 (488)
..|+..+..+|.+++..............-+.+ .+-++...-..+...+.++.......+.... .+. .
T Consensus 1140 ~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~ 1219 (3550)
T KOG0889|consen 1140 SDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRF 1219 (3550)
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHH
Confidence 899999999999988765222222222222222 1122222333444444444443332221110 000 0
Q ss_pred ---------hCCHHHHHHhcCCCC----cchHhHHHHHHhHhhcCCchhhHH--HhhCCChHHHHHHhcccchhhHHHHH
Q 011328 241 ---------AGVCPRLVELLRHPS----PSVLIPALRTVGNIVTGDDMQTQC--IINHQALPCLLDLLTQNYKKSIKKEA 305 (488)
Q Consensus 241 ---------~~~l~~L~~lL~~~~----~~v~~~a~~~L~~l~~~~~~~~~~--~~~~~~~~~L~~lL~~~~~~~v~~~a 305 (488)
....- +.+.....+ -..|..+..+++......+..... -...+++..+.+.+... .+++...+
T Consensus 1220 ~~~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~-~~Ei~~~~ 1297 (3550)
T KOG0889|consen 1220 LIALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKR-SSELIEVA 1297 (3550)
T ss_pred HHHhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCC-hHHHHHHH
Confidence 01111 222222211 234667777776666544432111 12346777888888777 77788877
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCChHHHH
Q 011328 306 CWTISNITAGNVNQIQAIIEAGIIGPLV 333 (488)
Q Consensus 306 ~~~L~nl~~~~~~~~~~l~~~~~l~~L~ 333 (488)
..++......+...-...++.+.-|.|.
T Consensus 1298 ~~~l~~v~~~~~~~~ke~lq~~lrplL~ 1325 (3550)
T KOG0889|consen 1298 LEGLRKVLAQDVKLPKELLQSHLRPLLM 1325 (3550)
T ss_pred HHHHHhhhhccccccHHHHHhhHHHHHH
Confidence 7777776654333333334433333333
No 421
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=31.21 E-value=2.5e+02 Score=22.58 Aligned_cols=84 Identities=18% Similarity=0.157 Sum_probs=47.2
Q ss_pred hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCC
Q 011328 114 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP 193 (488)
Q Consensus 114 ~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 193 (488)
...+-..+..+|.+++++++..|+.|+...- .+. +.. .-+.|-.++ + +...+.... .+. +.......
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~~k--~~~----l~p--Y~d~L~~Ll-d--d~~frdeL~-~f~-~~~~~~~I 81 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLTWK--DPY----LTP--YKDNLENLL-D--DKTFRDELT-TFN-LSDESSVI 81 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--cHH----HHh--HHHHHHHHc-C--cchHHHHHH-hhc-ccCCcCCC
Confidence 3345677888999999999999999998862 121 111 123445555 2 223332222 211 22222233
Q ss_pred ChhhhhchHHHHHHhhc
Q 011328 194 LFEQTRPALPALERLIH 210 (488)
Q Consensus 194 ~~~~~~~~~~~l~~ll~ 210 (488)
.......++|.++.+|-
T Consensus 82 ~~ehR~~l~pvvlRILy 98 (141)
T PF07539_consen 82 EEEHRPELMPVVLRILY 98 (141)
T ss_pred CHHHHhHHHHHHHHHHH
Confidence 44455778888888774
No 422
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=31.14 E-value=1.8e+02 Score=25.12 Aligned_cols=98 Identities=11% Similarity=0.149 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhh
Q 011328 299 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL 378 (488)
Q Consensus 299 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~l 378 (488)
..+-..+...|..++.++.++...+.+. ++.++..+.......-..+..++..+..+ +++....+.+. .++.++++
T Consensus 75 ~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~d-N~~L~~~i~e~-~I~~~i~l 150 (207)
T PF01365_consen 75 KELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRD-NPELCESISEE-HIEKFIEL 150 (207)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHC-cHHHHHHhhHH-HHHHHHHH
Confidence 3566788899999999888887777663 44333333332111223466777777664 34555555543 48888888
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhh
Q 011328 379 LNCPDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 379 l~~~~~~v~~~al~~L~~l~~~~~ 402 (488)
+...... ..-+..|..++..+.
T Consensus 151 l~~~gr~--~~~L~~L~~lc~~~g 172 (207)
T PF01365_consen 151 LRKHGRQ--PRYLDFLSSLCVCNG 172 (207)
T ss_dssp ------------------------
T ss_pred HHHcCCC--hHHHHHHhhhcccCC
Confidence 8763322 335666666665543
No 423
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=29.31 E-value=2.3e+02 Score=20.76 Aligned_cols=57 Identities=16% Similarity=0.046 Sum_probs=41.0
Q ss_pred ccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHh
Q 011328 171 AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYL 227 (488)
Q Consensus 171 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~v~~~al~~L~~l 227 (488)
++..+|+.|+..|..++.............+...+.+.+.++ ......-|+..|..+
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 456889999999999998765554555567777788777755 345566677777766
No 424
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=29.11 E-value=1.8e+02 Score=22.14 Aligned_cols=69 Identities=14% Similarity=0.148 Sum_probs=44.7
Q ss_pred CCHHHHHHhhcCCC---ChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCC
Q 011328 73 GVVPRFIEFLSRDD---FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGD 146 (488)
Q Consensus 73 ~~i~~L~~lL~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~--~~~~v~~~a~~~L~~l~~~ 146 (488)
|++..+-+.+.+.+ ...-|..+++++..+..-... .+. .+.|.+..+|++ +.++++..|+.+...+...
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~---~i~--~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~ 84 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGK---HIS--SALPQIMACLQSALEIPELRSLALRCWHVLIKT 84 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHH---HHH--HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHh
Confidence 55566666665543 345688888888887762111 111 245666667766 6788999999988887643
No 425
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=28.65 E-value=1e+02 Score=30.47 Aligned_cols=70 Identities=20% Similarity=0.229 Sum_probs=51.9
Q ss_pred HHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011328 244 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 314 (488)
Q Consensus 244 l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 314 (488)
...+-.+..+++++++..+..++++++.++...+..+-....-..+++.+..+ .+++-+.+..++.-+..
T Consensus 330 ~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~-~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 330 LKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTP-EPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhccc-ccccchhhhHHHHHhhh
Confidence 34444455668899999999999999988766554444555667788888887 78888888888776653
No 426
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=28.45 E-value=2.8e+02 Score=21.37 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=60.5
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhcc
Q 011328 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNM 407 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~ 407 (488)
+++.|+.-|.+++++|...|...|...+... .....++... +.|..+-+ ..--.+.+++....-
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~--~~le~~v~~~--p~l~~L~~--------~g~~Ll~~~lS~~~G---- 72 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK--EYLEYLVSLR--PSLDHLGD--------IGSPLLLRFLSTPSG---- 72 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch--hhHHHHHHcC--cHHHHHHH--------cCHHHHHHHHcchHH----
Confidence 4778888899999999999999999998644 4445544311 22222111 111233344333221
Q ss_pred CCCCccchHHHHHHhhccH-HHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 011328 408 GNTGGVNLFAQAIDDAEGL-EKIENLQSHDNTEIYEKAVKILETYWVEE 455 (488)
Q Consensus 408 ~~~~~~~~~~~~l~~~g~~-~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 455 (488)
...+.+.|.+ +-+....+..|.+-.......+..-+...
T Consensus 73 ---------f~~L~~~~~v~~El~~W~~~~N~~YV~~vE~~l~~~~~~~ 112 (115)
T PF14663_consen 73 ---------FRYLNEIGYVEKELDKWFESFNKEYVKLVEEFLSEALTNH 112 (115)
T ss_pred ---------HHHhcchhHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcc
Confidence 2234444433 33566688888887777777776665543
No 427
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=27.62 E-value=78 Score=29.28 Aligned_cols=54 Identities=24% Similarity=0.285 Sum_probs=42.7
Q ss_pred CChHHHHHHHhcCChhHHHHHHHHHHHhccCC-------------CHHHHHHHHHCCChHHHHhhcC
Q 011328 327 GIIGPLVNLLLNAEFEIKKEAAWAISNATSGG-------------SNEQIKFLVSQGCIKPLCDLLN 380 (488)
Q Consensus 327 ~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-------------~~~~~~~l~~~~~i~~L~~ll~ 380 (488)
..+..+++-|...+...|..|+.+|..++.+. -..+...+.+.|+++.|..+|+
T Consensus 60 ~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 60 DFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 45667888888888889999999999998754 1234556778899999999886
No 428
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.07 E-value=8.4e+02 Score=26.48 Aligned_cols=137 Identities=13% Similarity=0.114 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-----CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHH
Q 011328 214 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-----PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPC 288 (488)
Q Consensus 214 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 288 (488)
....+.++..+..++.+...... ..++.++....+ .+++....+...++.++..-.+.-. .-.-.++.
T Consensus 481 ~~~tEaci~~~~sva~~~~~t~~-----~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~--~ln~sl~~ 553 (982)
T KOG2022|consen 481 LNRTEACIFQFQSVAEYLGETES-----TWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPM--YLNPSLPL 553 (982)
T ss_pred HHHHHHHHHHHHHHHhhcCcchh-----HHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCc--ccCchHHH
Confidence 34556666667666655443322 335666666533 3677777888888777653222211 11346788
Q ss_pred HHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCCHH
Q 011328 289 LLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNE 361 (488)
Q Consensus 289 L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~ 361 (488)
|++-|..+ +.-..+...+..++...++......+ +++...-..+... .+..+.....+++.+.+.-.++
T Consensus 554 L~~~Lh~s---k~s~q~i~tl~tlC~~C~~~L~py~d-~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pE 624 (982)
T KOG2022|consen 554 LFQGLHNS---KESEQAISTLKTLCETCPESLDPYAD-QFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPE 624 (982)
T ss_pred HHHHhcCc---hHHHHHHHHHHHHHHhhhhhCchHHH-HHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHH
Confidence 88888654 33445666688888765655544443 3555555555544 5567888899999988765543
No 429
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.49 E-value=8.4e+02 Score=26.35 Aligned_cols=167 Identities=13% Similarity=0.052 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC
Q 011328 174 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 253 (488)
Q Consensus 174 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 253 (488)
..+-.+...+.++....|.. ......+-.+...+..++..++-..+++...--.+-. ...-..+++..+.....+
T Consensus 39 ~eqpeavvr~~RLFek~Pfp--ifiNs~llrLaDaF~~Gn~llRf~V~rv~~q~g~hln---~v~n~aE~lrri~~V~hs 113 (970)
T KOG1988|consen 39 SEQPEAVVRFPRLFEKYPFP--IFINSQLLRLADAFPVGNNLLRFAVLRVDQQSGKHLN---KVLNGAEFLRRIFYVDHS 113 (970)
T ss_pred ccchHHHHHHHHHHhhCCch--hhhhHHHHHHHHHhccCcHHHHHHHHHHHhhccccch---hhhhhhhhhheeEEeecC
Confidence 33444555556665554443 3334444556677777888888888887773222211 122223556666666677
Q ss_pred CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHH-HhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHH
Q 011328 254 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD-LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPL 332 (488)
Q Consensus 254 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~-lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L 332 (488)
+++.-|..++.+++.+..--++. +....++. -+.+. +.---+.|+.+..+++..+.+-.. ++...+
T Consensus 114 nDp~aRAllL~ilg~~s~lipEf-------n~~hhlIr~sl~S~-helE~eaa~~Aaa~Faa~sk~FA~-----si~gki 180 (970)
T KOG1988|consen 114 NDPVARALLLRILGQLSALIPEF-------NQVHHLIRISLDSH-HELEVEAAEFAAACFAAQSKDFAC-----SICGKI 180 (970)
T ss_pred CCHHHHHHHHHHHHHhhhhcccc-------cchhHHHHHHhcCc-cchhhHHHHHHHhhhhhhhhhhHH-----HHHHHH
Confidence 88989999999999887644322 33444444 44444 333345667777777764333211 233334
Q ss_pred HHHHhcC--ChhHHHHHHHHHHHhccCC
Q 011328 333 VNLLLNA--EFEIKKEAAWAISNATSGG 358 (488)
Q Consensus 333 ~~ll~~~--~~~v~~~a~~aL~~l~~~~ 358 (488)
-.++... ....+...+.++..|....
T Consensus 181 s~mIef~d~~~~mkL~li~Vfs~M~c~a 208 (970)
T KOG1988|consen 181 SDMIEFLDLPVPMKLSLIPVFSHMHCHA 208 (970)
T ss_pred HHHhhcccCCCCcchhHhHHHHHhcchh
Confidence 4444443 4567888899999997543
No 430
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=26.19 E-value=5.3e+02 Score=23.86 Aligned_cols=141 Identities=13% Similarity=0.109 Sum_probs=73.5
Q ss_pred HHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcc------CChhHHHHHHHHHHHhccCCchhH
Q 011328 162 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS------NDDEVLTDACWALSYLSDGTNDKI 235 (488)
Q Consensus 162 ~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~------~~~~v~~~al~~L~~l~~~~~~~~ 235 (488)
.++.-+.+..+...+..|+.+|.+=+ -....+|.++.++.. .+-......+...+.+..+..-..
T Consensus 201 kvisal~dEs~~~~r~aAl~sLr~ds---------GlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFv 271 (450)
T COG5095 201 KVISALLDESDEQTRDAALESLRNDS---------GLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFV 271 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCc---------cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceee
Confidence 33444435667777777777665422 124566777766642 244455555555666655543222
Q ss_pred HHHHHhCCHHHHHHhc-----CCCCc-----chHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHH-HhcccchhhHHHH
Q 011328 236 QAVIEAGVCPRLVELL-----RHPSP-----SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD-LLTQNYKKSIKKE 304 (488)
Q Consensus 236 ~~~~~~~~l~~L~~lL-----~~~~~-----~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~-lL~~~~~~~v~~~ 304 (488)
+..+. .++|.++.++ .+... .+|..|...+...+...+..... ++..+...+++ +|...........
T Consensus 272 dPY~h-qlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~Ykt-LkPRvtrTllKafLD~~k~~sT~YG 349 (450)
T COG5095 272 DPYLH-QLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKT-LKPRVTRTLLKAFLDREKTESTQYG 349 (450)
T ss_pred cHHHH-HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhh-hchHHHHHHHHHHHhcccccchhhh
Confidence 22222 4455555554 22222 37777888888777655433322 22233333333 4443334456667
Q ss_pred HHHHHHHHh
Q 011328 305 ACWTISNIT 313 (488)
Q Consensus 305 a~~~L~nl~ 313 (488)
|+..++-+.
T Consensus 350 alkgls~l~ 358 (450)
T COG5095 350 ALKGLSILS 358 (450)
T ss_pred hhhhhhhhc
Confidence 777776664
No 431
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=26.17 E-value=2.9e+02 Score=20.89 Aligned_cols=71 Identities=18% Similarity=0.210 Sum_probs=45.3
Q ss_pred CChHHHHHHHhc----CChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHh
Q 011328 327 GIIGPLVNLLLN----AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC--PDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 327 ~~l~~L~~ll~~----~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~al~~L~~l~~~ 400 (488)
|++..+-+.+.+ .+..-|..++.++..+...+. ..... +.+.++.+|.. +.++++..++++...++..
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~-~~i~~-----~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~ 84 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGG-SHISS-----ARPQIMACLQSALEIPELREEALSCWNCFIKT 84 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhH-HHHHH-----HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Confidence 345555555555 366788899999999987442 22222 34444444442 3448889999999888876
Q ss_pred hhh
Q 011328 401 GEA 403 (488)
Q Consensus 401 ~~~ 403 (488)
-+.
T Consensus 85 L~~ 87 (107)
T PF08064_consen 85 LDE 87 (107)
T ss_pred CCH
Confidence 553
No 432
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=26.10 E-value=3.2e+02 Score=23.92 Aligned_cols=68 Identities=19% Similarity=0.157 Sum_probs=49.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCCCc-cHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011328 34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSP-PINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 103 (488)
Q Consensus 34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~ 103 (488)
.+.+.|.+.++.+|..|+..|...++..... ....+. .+.+-|.-.+-..|.+.+|+..+.-|+.+..
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~--kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~ 72 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDML--KLWKGLFYCMWMSDKPLVQEELAEELASLIH 72 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHH--HHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 5788999999999999999999998865322 222222 3455566666555558888888888887776
No 433
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=25.94 E-value=1.8e+02 Score=24.66 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=52.1
Q ss_pred HHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHH
Q 011328 245 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 324 (488)
Q Consensus 245 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 324 (488)
+.+.....++++-+++.+..++...... ..... .+++.+-.++.++ +.-|+....|+|..++...++....++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~~d~-~~~Vqkav~w~L~~~~~~~~~~v~~~l 180 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-ETDFD-----LLLEIIERLLHDE-EYFVQKAVGWALREYGKKDPERVIAFL 180 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-cccHH-----HHHHHHHHhCCCH-HHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 6677888888888888888777766553 11111 2344555555666 889999999999999987677655554
Q ss_pred H
Q 011328 325 E 325 (488)
Q Consensus 325 ~ 325 (488)
+
T Consensus 181 ~ 181 (197)
T cd06561 181 E 181 (197)
T ss_pred H
Confidence 4
No 434
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=25.55 E-value=3e+02 Score=20.87 Aligned_cols=88 Identities=10% Similarity=0.099 Sum_probs=52.0
Q ss_pred ccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHh
Q 011328 171 AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 250 (488)
Q Consensus 171 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 250 (488)
+.+.+..-..|++.+... ...++..+.+.+....+.-+-.++..+-.++.+............+.+.+...
T Consensus 17 S~~~I~~lt~~a~~~~~~---------a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~ 87 (114)
T cd03562 17 SQPSIQTLTKLAIENRKH---------AKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDA 87 (114)
T ss_pred cHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 445566666666666422 24566666677776666677777777777776654443434443445555555
Q ss_pred cCCCCcchHhHHHHHHh
Q 011328 251 LRHPSPSVLIPALRTVG 267 (488)
Q Consensus 251 L~~~~~~v~~~a~~~L~ 267 (488)
....+++++......+.
T Consensus 88 ~~~~~~~~r~kl~rl~~ 104 (114)
T cd03562 88 YEKVDEKTRKKLERLLN 104 (114)
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 55566666665555443
No 435
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=25.54 E-value=7e+02 Score=25.08 Aligned_cols=339 Identities=12% Similarity=0.120 Sum_probs=159.6
Q ss_pred CCHHHHHHhhcCCC---ChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHH----HHhhhhC
Q 011328 73 GVVPRFIEFLSRDD---FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW----ALGNVAG 145 (488)
Q Consensus 73 ~~i~~L~~lL~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~----~L~~l~~ 145 (488)
++-..|..||.... .++++...+.+|.-+-. +..+.-..++..+..++..++..+|..+.. .|.|+-.
T Consensus 16 ~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrN-----k~~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~ 90 (616)
T KOG2229|consen 16 NFPSELKDLLRTNHTVLPPELREKIVKALILLRN-----KNLIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINK 90 (616)
T ss_pred hhhHHHHHHHHhccccCCHHHHHHHHHHHHHHhc-----cCcCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHh
Confidence 34455666665431 27889998888877754 333334456778888888887777765544 3333321
Q ss_pred CCchhHHHHHhcCChH-HHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHH
Q 011328 146 DSPKCRDLVLSNGALM-PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWAL 224 (488)
Q Consensus 146 ~~~~~~~~~~~~~~l~-~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L 224 (488)
.+.. .-.. ..++ .+..+| +.+++.-...|+.++..|-... .+. ....+..+....-+.++.+...++..+
T Consensus 91 ~~kn---~kln-kslq~~~fsml-~~~d~~~ak~a~~~~~eL~kr~--iW~--d~~tV~i~~~acf~~~~ki~vs~l~Ff 161 (616)
T KOG2229|consen 91 KHKN---DKLN-KSLQAFMFSML-DQSDSTAAKMALDTMIELYKRN--IWN--DSKTVNIITTACFSKVPKILVSGLRFF 161 (616)
T ss_pred hccc---chHH-HHHHHHHHHHH-hCCCchhHHHHHHHHHHHHHhc--ccc--cchhHHHHHHHHhccCcHHHHhhhHHh
Confidence 1110 0001 1233 345566 5566554444444444444332 111 234444444444556777777776665
Q ss_pred HHhccCCch-hHHHHHHh-C-CHHH-HHHhcCCCCcchHhHHHHHHhHhhc------CCc----hhhHHHh-hCCChHHH
Q 011328 225 SYLSDGTND-KIQAVIEA-G-VCPR-LVELLRHPSPSVLIPALRTVGNIVT------GDD----MQTQCII-NHQALPCL 289 (488)
Q Consensus 225 ~~l~~~~~~-~~~~~~~~-~-~l~~-L~~lL~~~~~~v~~~a~~~L~~l~~------~~~----~~~~~~~-~~~~~~~L 289 (488)
.---...++ ..+.--+. | -+.. +.+........-...-..+...+-. ..+ .....+- ..|+-+.|
T Consensus 162 L~~D~~dee~dsd~~~d~dg~~~~~l~~~~vnkktkkr~~kl~~a~k~vkkkqk~~~~~~t~nfs~i~ll~DpQ~fAEkL 241 (616)
T KOG2229|consen 162 LGADNEDEEDDSDSESDEDGPDADALLHQRVNKKTKKRQKKLLRAAKSVKKKQKKKKNAPTFNFSAIHLLHDPQGFAEKL 241 (616)
T ss_pred ccCCccccccccccccccccccHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhcCCCCCCCCccHHHhhcChhHHHHHH
Confidence 432211110 00000000 1 1222 2222222111111111122211111 000 0011111 12445555
Q ss_pred HHHhcc-cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCC-CHHHHHHHH
Q 011328 290 LDLLTQ-NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG-SNEQIKFLV 367 (488)
Q Consensus 290 ~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~l~ 367 (488)
+..+.. ....+++...+..|+.+... ..++--|+.|.|.+++..+..++.+-... ....+-.. .++....
T Consensus 242 fk~~~~~~er~E~klm~~~lisRliG~-----HkL~l~~fY~fl~~yl~phqrDvTqIl~~-aaQa~Hd~VP~d~iEp-- 313 (616)
T KOG2229|consen 242 FKQLLACKERFEVKLMLMKLISRLIGI-----HKLFLFGFYPFLQRYLQPHQRDVTQILAA-AAQASHDLVPPDIIEP-- 313 (616)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHhhh-----hHHHHhhhHHHHHHHcCcchhhHHHHHHH-HHHhccCCCChHHhhH--
Confidence 554433 33567777777777777642 13344578999999998875555443322 22222222 2222222
Q ss_pred HCCChHHHHhhcC--CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHH
Q 011328 368 SQGCIKPLCDLLN--CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445 (488)
Q Consensus 368 ~~~~i~~L~~ll~--~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~ 445 (488)
.+..+.+.+- ...+++....+.++..++...+.. .+...++-|..+-.+. .++...|.
T Consensus 314 ---l~k~Ian~FVtD~~spEv~~vgiN~iREic~Rvpla----------------MteeLLqDLa~YK~sk-~K~V~maa 373 (616)
T KOG2229|consen 314 ---LLKTIANNFVTDENSPEVMAVGINAIREICERVPLA----------------MTEELLQDLASYKTSK-KKVVMMAA 373 (616)
T ss_pred ---HHHHHHHHhcccCCCcceeehhhhHHHHHHhhcchh----------------hcHHHHHHHHHHhHHH-HHHHHHHH
Confidence 2334444332 245778888888898888775522 2222344455554443 34445555
Q ss_pred HHHHHhcC
Q 011328 446 KILETYWV 453 (488)
Q Consensus 446 ~~l~~~~~ 453 (488)
+.+.++|.
T Consensus 374 rSLI~L~R 381 (616)
T KOG2229|consen 374 RSLIALYR 381 (616)
T ss_pred HHHHHHHH
Confidence 55555554
No 436
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=24.43 E-value=2.2e+02 Score=21.63 Aligned_cols=70 Identities=4% Similarity=0.036 Sum_probs=43.5
Q ss_pred CChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHh
Q 011328 284 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 354 (488)
Q Consensus 284 ~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l 354 (488)
.++..+.+.+... .+.-|..+++++-.++..............+.+.+...+...+++++......+.-.
T Consensus 37 ~iv~~i~~~i~~~-~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~iW 106 (114)
T cd03562 37 EIVEIIEKHIKKC-PPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLNIW 106 (114)
T ss_pred HHHHHHHHHHHhC-CcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 3455566666666 666777888888888774333233333434466777777777777777666555443
No 437
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.08 E-value=1e+02 Score=28.99 Aligned_cols=62 Identities=8% Similarity=0.045 Sum_probs=49.2
Q ss_pred HHHHHhHhhcCCchhhHHHhhCCChHHHHHHh--cccchhhHHHHHHHHHHHHhcCCHHHHHHHH
Q 011328 262 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLL--TQNYKKSIKKEACWTISNITAGNVNQIQAII 324 (488)
Q Consensus 262 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL--~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 324 (488)
..+.++++++..++....+-+.++++.+++-- ++. +|-+++....++.++...+.++.+.+-
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~-nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDW-NPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCC-ChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 56789999998888888888888888887743 455 889999999999999987666655443
No 438
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=24.00 E-value=4.3e+02 Score=22.10 Aligned_cols=76 Identities=13% Similarity=0.056 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHh
Q 011328 214 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL 293 (488)
Q Consensus 214 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL 293 (488)
-++|..|..++..+......... +. .++..+..-|.+ +.+++..+...+..++...+.....-++ .+.+.+-..|
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~-~~--~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld-~l~~~l~~~L 115 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRID-IS--EFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLD-SLVEPLRKTL 115 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS--HH--HHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-HH--HHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHh
Confidence 57899999999888755443333 22 346777777887 8899999999999999877755444333 5667777776
Q ss_pred c
Q 011328 294 T 294 (488)
Q Consensus 294 ~ 294 (488)
+
T Consensus 116 ~ 116 (169)
T PF08623_consen 116 S 116 (169)
T ss_dssp H
T ss_pred h
Confidence 4
No 439
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=23.80 E-value=1.2e+02 Score=24.46 Aligned_cols=37 Identities=19% Similarity=0.138 Sum_probs=28.0
Q ss_pred HHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011328 417 AQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 453 (488)
Q Consensus 417 ~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~ 453 (488)
+.........+.+..++.+++++||..|.+++-.|-+
T Consensus 10 k~l~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~ 46 (141)
T PF07539_consen 10 KSLYRSDELYDALLRLLSSRDPEVQKLALDCLLTWKD 46 (141)
T ss_pred HHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 4455555666778888999999999999998876543
No 440
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=23.78 E-value=7.6e+02 Score=24.89 Aligned_cols=193 Identities=15% Similarity=0.172 Sum_probs=98.5
Q ss_pred hchHHHHHHhhc-cCChhHHHHHHHHHHHhc--cCCc--------hhHHHHHHhCCHHHHHHhcC----CCCcc----hH
Q 011328 199 RPALPALERLIH-SNDDEVLTDACWALSYLS--DGTN--------DKIQAVIEAGVCPRLVELLR----HPSPS----VL 259 (488)
Q Consensus 199 ~~~~~~l~~ll~-~~~~~v~~~al~~L~~l~--~~~~--------~~~~~~~~~~~l~~L~~lL~----~~~~~----v~ 259 (488)
..++..+.+++. ++...++.++.|.|+.+- .-+. .....+-+..++...+..+- .+.+. ..
T Consensus 96 nevir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lv 175 (589)
T PF11229_consen 96 NEVIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLV 175 (589)
T ss_pred HHHHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHH
Confidence 455666666665 357788899999988653 1111 11122333344555555542 22222 22
Q ss_pred hHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC
Q 011328 260 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA 339 (488)
Q Consensus 260 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~ 339 (488)
..++..++....... .=..+.-..+-.+++-....+++..++.....=+.. ......++..=+.|.++.-+.
T Consensus 176 kvvl~~ia~vgeS~q-----yPPVNWaalLsPLMRlnfGeEvq~lCLeiAvtQaqS-SqsAa~fLg~WlsPpli~sLs-- 247 (589)
T PF11229_consen 176 KVVLKPIATVGESYQ-----YPPVNWAALLSPLMRLNFGEEVQQLCLEIAVTQAQS-SQSAAMFLGSWLSPPLIHSLS-- 247 (589)
T ss_pred HHHHHHhhhcCCCCC-----CCCccHHHHhhHHHhccccHHHHHHHHHHHHHhccc-cccHHHHHHhhcCcchhhhhh--
Confidence 333333332211110 001123333444444343566777766443333322 344455666556666655443
Q ss_pred ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011328 340 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 340 ~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~ 400 (488)
...+..-+..+......-..+..+.+.+.-.+..+...-.-.++++...++..|..-++.
T Consensus 248 -~~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKl 307 (589)
T PF11229_consen 248 -VNTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKL 307 (589)
T ss_pred -HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcC
Confidence 356666666777676666667777766644444444433345677777777777765544
No 441
>PRK09169 hypothetical protein; Validated
Probab=23.70 E-value=1.4e+03 Score=28.07 Aligned_cols=94 Identities=16% Similarity=0.139 Sum_probs=40.7
Q ss_pred ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhh-cCCCChhHHHHHHHHHHHhcCCCch
Q 011328 30 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFL-SRDDFPQLQFEAAWALTNIASGTSE 107 (488)
Q Consensus 30 ~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~~v~~~a~~~L~~l~~~~~~ 107 (488)
..+..+++.++. ++...-..++..+...+..+ ......+-.. .+..+++-| +-++++..+..+..+-..+.. .+.
T Consensus 163 ~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~-~~l~~al~~q-~va~~lnalSKwp~~~~cr~a~~~lA~rL~~-~~~ 239 (2316)
T PRK09169 163 ISFALLLNALSKWPDNTDCQTAAEQLADRLASD-SRLLQAMDAQ-EVANALNALSKWPDSPRCRNAAERLAERLAD-EPG 239 (2316)
T ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHhccC-HHHHHhcchH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhc-ChH
Confidence 445566667664 44444444555555555443 2333333222 233333433 344533444433333333443 444
Q ss_pred hhHHHHhCCCHHHHHHhhCC
Q 011328 108 NTRVVIDHGAVPIFVRLLSS 127 (488)
Q Consensus 108 ~~~~~~~~g~i~~L~~~L~~ 127 (488)
.+..+-..+ +..++.-|+.
T Consensus 240 l~~~l~~q~-va~~LNAlSK 258 (2316)
T PRK09169 240 LLQSLRAQE-VALLLNALSK 258 (2316)
T ss_pred HHHhcCHHH-HHHHHHHHhc
Confidence 443332222 4444444444
No 442
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=23.40 E-value=3.6e+02 Score=22.55 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHH
Q 011328 43 DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV 122 (488)
Q Consensus 43 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 122 (488)
.-++|..|..++..++... ....+ + ..++..+..-|.+ + .+++.-+...+.+++...|.....-++ .+++.+-
T Consensus 40 GLelRK~ayE~lytlLd~~-~~~~~-~--~~~~~~v~~GL~D-~-~DIk~L~~~~l~kl~~~~p~~v~~~Ld-~l~~~l~ 112 (169)
T PF08623_consen 40 GLELRKAAYECLYTLLDTC-LSRID-I--SEFLDRVEAGLKD-E-HDIKMLCHLMLSKLAQLAPEEVLQRLD-SLVEPLR 112 (169)
T ss_dssp GGHHHHHHHHHHHHHHHST-CSSS--H--HHHHHHHHHTTSS---HHHHHHHHHHHHHHHHS-HHHHHHCCT-TTHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH-HHhCC-H--HHHHHHHHhhcCC-c-HHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHH
Confidence 4688999999999987653 22222 1 1246667777777 5 799999999999998866655443333 5677777
Q ss_pred HhhCC------------CCHHHHHHHHHHHhhh
Q 011328 123 RLLSS------------PTDDVREQAVWALGNV 143 (488)
Q Consensus 123 ~~L~~------------~~~~v~~~a~~~L~~l 143 (488)
..|.. ...+....+++++..+
T Consensus 113 ~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l 145 (169)
T PF08623_consen 113 KTLSKKLKENAVKQEIEKQQELIRSVLRAVKAL 145 (169)
T ss_dssp HHHH----TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccCCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 77643 1245666777777776
No 443
>COG4291 Predicted membrane protein [Function unknown]
Probab=23.18 E-value=1.5e+02 Score=25.38 Aligned_cols=40 Identities=23% Similarity=0.493 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCcC
Q 011328 442 EKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNF 487 (488)
Q Consensus 442 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (488)
..+..--+.||..-.+|+..+++ +.+++|.++- .|+||+|
T Consensus 135 m~alHYAhlYw~~a~~d~~~~~~---~rg~~fp~~~---~P~g~DF 174 (228)
T COG4291 135 MTALHYAHLYWRPAGDDPGEKPI---KRGLDFPETP---EPDGWDF 174 (228)
T ss_pred HHHHHHHHHhhccccCCCCCCcc---cCCCCCCCCC---CCCccch
Confidence 34555567788866665434443 3468898888 8899987
No 444
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=23.14 E-value=6.2e+02 Score=23.63 Aligned_cols=129 Identities=11% Similarity=-0.008 Sum_probs=72.8
Q ss_pred HhHHHHHHHHHHHhhcCCCCCChhh-hhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc
Q 011328 173 LSMLRNATWTLSNFCRGKPQPLFEQ-TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 251 (488)
Q Consensus 173 ~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL 251 (488)
..|-..|+.+...+...-....... ..-..+.+..++......|+...+..+....-.-+....... .|++..++..+
T Consensus 69 sGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l-~~li~slLpGL 147 (307)
T PF04118_consen 69 SGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCL-KGLILSLLPGL 147 (307)
T ss_pred hHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHH-HHHHHHhcccc
Confidence 3455555555554444321111111 122345566667667777887777777765432222323233 37778888888
Q ss_pred CCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011328 252 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 311 (488)
Q Consensus 252 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n 311 (488)
.++..+....+...+-.+...-... -+...+...+-+ ++.+|..|...+..
T Consensus 148 ede~sE~~~~~~~ll~~l~~~v~~~-------~F~~~lwl~ii~--sp~~Rl~al~~l~~ 198 (307)
T PF04118_consen 148 EDEGSEFFDRTLKLLDKLKEAVGDK-------YFWQCLWLCIIT--SPSRRLGALNYLLR 198 (307)
T ss_pred ccCCchHHHHHHHHHHHHHHhcChh-------HHHHHHHHHHhc--CcchhHHHHHHHHH
Confidence 8888889999988888877532211 244455554443 34567666655443
No 445
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=22.79 E-value=2.4e+02 Score=18.69 Aligned_cols=50 Identities=22% Similarity=0.346 Sum_probs=33.7
Q ss_pred HHHhcCCCchhhHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHhhhhCCCc
Q 011328 98 LTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSP 148 (488)
Q Consensus 98 L~~l~~~~~~~~~~~~~~g~i~~L~~~L~-~~~~~v~~~a~~~L~~l~~~~~ 148 (488)
|.-++. +...|..+.+.|+-+.+-.+=. .+++.+++.+-.+..-|.++.+
T Consensus 2 LllL~~-T~~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE~ 52 (58)
T PF04064_consen 2 LLLLCA-TREGREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDEP 52 (58)
T ss_pred HhHHhc-cHHHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCCC
Confidence 344555 6788999988886555555433 3678888887777766665543
No 446
>PF15573 Imm27: Immunity protein 27
Probab=22.36 E-value=2.1e+02 Score=24.87 Aligned_cols=77 Identities=16% Similarity=0.110 Sum_probs=46.4
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCC-CHHHHHHHHHHHhhhhCCCchhHHH
Q 011328 75 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDL 153 (488)
Q Consensus 75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~-~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (488)
=+.|++++.+..++.+..-+.+.++.+|. ..+.|+ .+-+. +|.+. ...+-..+..+...++
T Consensus 48 K~LLiqLMN~TkDE~vLNLCiRlFcSV~T-HdDL~~----~nNl~----FLs~asE~~v~TF~s~A~~tlS--------- 109 (259)
T PF15573_consen 48 KNLLIQLMNQTKDEAVLNLCIRLFCSVAT-HDDLRD----SNNLR----FLSSASEFGVFTFASGAITTLS--------- 109 (259)
T ss_pred hHHHHHHHhcchhHHHHHHHHHHHHhhcc-hHhhhc----cccee----hHhhhhHHHHHHHHHHhhccch---------
Confidence 35778899877657888889999999998 333332 22222 33332 2333344444444443
Q ss_pred HHhcCChHHHHHHhccccc
Q 011328 154 VLSNGALMPLLAQFNEHAK 172 (488)
Q Consensus 154 ~~~~~~l~~L~~ll~~~~~ 172 (488)
..++|.|+.++..-++
T Consensus 110 ---yeVIPYLLaLleeWed 125 (259)
T PF15573_consen 110 ---YEVIPYLLALLEEWED 125 (259)
T ss_pred ---hhHHHHHHHHHHHHhc
Confidence 3478899999865444
No 447
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.36 E-value=8.3e+02 Score=24.82 Aligned_cols=269 Identities=13% Similarity=0.102 Sum_probs=136.5
Q ss_pred CCHHHHHHhhcCCCC--hhHHHHHHHHHHHhcCCCchhhHHHHhC-CCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC--
Q 011328 73 GVVPRFIEFLSRDDF--PQLQFEAAWALTNIASGTSENTRVVIDH-GAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-- 147 (488)
Q Consensus 73 ~~i~~L~~lL~~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-- 147 (488)
.++..+..+++.++. .+.-.+++++++.-..-..-..+.+... ..+..+...++ +.+..+.|..++..+-...
T Consensus 153 ~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~--~~~lhe~At~cic~ll~~~~~ 230 (559)
T KOG2081|consen 153 KVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLS--DDELHEEATECICALLYCSLD 230 (559)
T ss_pred HHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcc--cchhhHHHHHHHHHHHHHhhh
Confidence 456667777765542 3566677777766555223334445544 45666666665 5556666666665553211
Q ss_pred -ch---hHH-HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHH---HHHHhhccCChhHHHH
Q 011328 148 -PK---CRD-LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP---ALERLIHSNDDEVLTD 219 (488)
Q Consensus 148 -~~---~~~-~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~---~l~~ll~~~~~~v~~~ 219 (488)
.. ... .+...-.++...++-..+.|.+-..+.+..+..++..-.......-.+.++ .++-.-.+++.++.+.
T Consensus 231 ~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~ 310 (559)
T KOG2081|consen 231 RSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEA 310 (559)
T ss_pred hhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhh
Confidence 11 111 111122344444444445566666777777777765321111111113333 3333344667788888
Q ss_pred HHHHHHHhccC----CchhHHHHHHh---CCHHHHHHhcCCCC---------c---chHhHHHHHHhHhhcCCchhhHHH
Q 011328 220 ACWALSYLSDG----TNDKIQAVIEA---GVCPRLVELLRHPS---------P---SVLIPALRTVGNIVTGDDMQTQCI 280 (488)
Q Consensus 220 al~~L~~l~~~----~~~~~~~~~~~---~~l~~L~~lL~~~~---------~---~v~~~a~~~L~~l~~~~~~~~~~~ 280 (488)
....-.++... .+.....+.+. .++..+...++-+. . +.|......+..++. .+
T Consensus 311 SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~-------ii 383 (559)
T KOG2081|consen 311 SFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAF-------II 383 (559)
T ss_pred hHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHH-------Hh
Confidence 77777766632 22222212221 23333333333221 1 233333333333221 01
Q ss_pred hhCCChHHHHHHhcc-cchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhcc
Q 011328 281 INHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATS 356 (488)
Q Consensus 281 ~~~~~~~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~ 356 (488)
-....++.+...++. ...++.-+.+++.+..++.. +++ ++.++|.+++++.+- ...++..++..++.+..
T Consensus 384 gs~e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~------e~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~e 457 (559)
T KOG2081|consen 384 GSDECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPE------ENTIMPEVLKLICNLPEQAPLRYTSILLLGEYSE 457 (559)
T ss_pred CcHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCcc------ccchHHHHHHHHhCCccchhHHHHHHHHHHHHHH
Confidence 011223334444433 33678888999999988874 222 456888888888764 33477778877777754
No 448
>PF13981 SopA: SopA-like central domain; PDB: 3NB2_B 3NAW_B 3SQV_B 2QZA_B 3SY2_B 2QYU_A.
Probab=21.83 E-value=2.6e+02 Score=22.34 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=27.9
Q ss_pred Hhhcc-HHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 011328 421 DDAEG-LEKIENLQSHDNTEIYEKAVKILETYWVEEDE 457 (488)
Q Consensus 421 ~~~g~-~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 457 (488)
...|. ++.+.....+.+++++..|..+.++|.+.++-
T Consensus 90 ~~N~~FIQ~i~~~~~~~~~~~k~~A~~LY~~YL~~~~V 127 (135)
T PF13981_consen 90 SNNGAFIQLIAQAMTHGDDEIKQKARDLYKKYLQLPRV 127 (135)
T ss_dssp HTHHHHHHHHHHHCC-TSCCCHHHHHHHHHHHCCSTTT
T ss_pred HcccHHHHHHHHHHHhccHHHHHHHHHHHHHHhcChhh
Confidence 33443 66677777878889999999999999987653
No 449
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.51 E-value=1.4e+03 Score=26.97 Aligned_cols=67 Identities=18% Similarity=0.173 Sum_probs=44.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 011328 379 LNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDE 457 (488)
Q Consensus 379 l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 457 (488)
.++....++..++..+...+-...-.. ....+...-..+..+.+++..+|++.|+.+|.-+......
T Consensus 1536 ~~~~tw~vr~avl~fl~~~vy~n~Fv~------------~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~ 1602 (1710)
T KOG1851|consen 1536 ADSSTWRVRSAVLKFLQTVVYSNIFVS------------QELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKF 1602 (1710)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhhcc------------cchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccc
Confidence 345667888888888877765443220 1122333346677788888888999999999887766444
Done!