Query 011328
Match_columns 488
No_of_seqs 341 out of 2480
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 05:51:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011328.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011328hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ul1_B Importin subunit alpha- 100.0 5.5E-58 1.9E-62 457.4 46.6 446 31-487 58-510 (510)
2 3tpo_A Importin subunit alpha- 100.0 8.5E-57 2.9E-61 451.5 47.7 447 30-487 76-529 (529)
3 4b8j_A Importin subunit alpha- 100.0 8.9E-49 3.1E-53 394.8 49.3 443 30-473 74-516 (528)
4 1wa5_B Importin alpha subunit; 100.0 5E-46 1.7E-50 374.7 49.5 426 30-458 87-515 (530)
5 2jdq_A Importin alpha-1 subuni 100.0 1.8E-44 6.1E-49 356.6 45.8 426 32-459 22-449 (450)
6 3ul1_B Importin subunit alpha- 100.0 4.7E-40 1.6E-44 328.1 31.8 378 15-401 90-480 (510)
7 3tpo_A Importin subunit alpha- 100.0 2.3E-39 7.8E-44 325.0 34.6 377 16-401 110-499 (529)
8 1jdh_A Beta-catenin; beta-cate 100.0 2.3E-36 8E-41 304.7 38.3 401 29-451 100-528 (529)
9 3now_A UNC-45 protein, SD10334 100.0 2.4E-37 8.1E-42 314.5 29.7 367 30-404 377-787 (810)
10 1xm9_A Plakophilin 1; armadill 100.0 6.4E-37 2.2E-41 300.7 30.5 365 74-456 3-452 (457)
11 3nmz_A APC variant protein; pr 100.0 9E-37 3.1E-41 294.3 28.8 371 25-402 27-453 (458)
12 2z6h_A Catenin beta-1, beta-ca 100.0 1.2E-35 4E-40 305.6 38.8 405 29-455 97-549 (644)
13 3now_A UNC-45 protein, SD10334 100.0 2.4E-36 8.3E-41 307.1 31.3 408 28-454 288-738 (810)
14 1wa5_B Importin alpha subunit; 100.0 7.4E-36 2.5E-40 300.5 32.9 369 30-402 130-513 (530)
15 4b8j_A Importin subunit alpha- 100.0 5.7E-36 1.9E-40 301.4 31.2 375 18-402 110-499 (528)
16 2jdq_A Importin alpha-1 subuni 100.0 1E-35 3.5E-40 293.8 29.9 368 30-402 64-446 (450)
17 2z6g_A B-catenin; FULL-length, 100.0 5.8E-34 2E-38 297.2 42.3 402 29-452 233-662 (780)
18 1xm9_A Plakophilin 1; armadill 100.0 5.1E-36 1.8E-40 294.3 24.6 364 31-402 3-452 (457)
19 3l6x_A Catenin delta-1; cateni 100.0 2.8E-35 9.5E-40 289.9 28.6 373 17-402 40-479 (584)
20 3l6x_A Catenin delta-1; cateni 100.0 1.4E-34 4.9E-39 284.8 30.4 367 71-454 46-477 (584)
21 3nmz_A APC variant protein; pr 100.0 9.7E-35 3.3E-39 280.2 24.5 338 12-358 56-452 (458)
22 1jdh_A Beta-catenin; beta-cate 100.0 8.4E-34 2.9E-38 286.0 30.4 403 30-453 59-489 (529)
23 2z6h_A Catenin beta-1, beta-ca 100.0 6.1E-33 2.1E-37 285.4 32.4 403 30-453 56-486 (644)
24 2z6g_A B-catenin; FULL-length, 100.0 2.1E-32 7.1E-37 285.5 31.3 402 30-452 192-621 (780)
25 3nmw_A APC variant protein; AR 100.0 1.5E-29 5.2E-34 237.1 20.5 269 88-359 46-337 (354)
26 3nmw_A APC variant protein; AR 100.0 1.9E-28 6.5E-33 229.7 23.8 274 128-403 44-338 (354)
27 4hxt_A De novo protein OR329; 99.9 2.7E-26 9.3E-31 207.8 23.7 244 29-275 1-245 (252)
28 4hxt_A De novo protein OR329; 99.9 2.7E-26 9.3E-31 207.8 23.3 240 73-315 2-242 (252)
29 4db8_A Armadillo-repeat protei 99.9 3E-26 1E-30 207.6 20.7 239 30-271 12-251 (252)
30 4db8_A Armadillo-repeat protei 99.9 2.3E-26 7.8E-31 208.3 19.3 239 73-314 12-251 (252)
31 1xqr_A HSPBP1 protein; armadil 99.9 2.3E-24 7.9E-29 196.6 21.1 236 214-457 54-291 (296)
32 3opb_A SWI5-dependent HO expre 99.9 2.6E-23 9E-28 207.5 29.3 399 30-453 255-728 (778)
33 3opb_A SWI5-dependent HO expre 99.9 2.1E-23 7.1E-28 208.2 22.3 322 30-356 334-728 (778)
34 4db6_A Armadillo repeat protei 99.9 3.6E-22 1.2E-26 175.3 22.4 199 198-398 10-208 (210)
35 4db6_A Armadillo repeat protei 99.9 2.7E-22 9.4E-27 176.0 19.9 199 71-271 10-209 (210)
36 1xqr_A HSPBP1 protein; armadil 99.9 3.6E-21 1.2E-25 175.5 21.5 226 88-314 54-287 (296)
37 3tt9_A Plakophilin-2; cell adh 99.8 3.2E-20 1.1E-24 161.6 13.7 197 74-272 9-230 (233)
38 3tt9_A Plakophilin-2; cell adh 99.8 5.9E-20 2E-24 160.0 13.6 197 30-230 8-230 (233)
39 1b3u_A Protein (protein phosph 99.8 2.6E-18 8.8E-23 175.1 25.3 383 30-454 164-549 (588)
40 1b3u_A Protein (protein phosph 99.8 3.2E-18 1.1E-22 174.4 23.5 382 30-452 203-586 (588)
41 4fdd_A Transportin-1; heat rep 99.8 3.3E-18 1.1E-22 181.8 22.2 355 30-402 90-474 (852)
42 3grl_A General vesicular trans 99.8 9E-16 3.1E-20 149.5 34.7 429 12-458 47-555 (651)
43 4fdd_A Transportin-1; heat rep 99.8 5.4E-18 1.8E-22 180.1 21.1 387 40-454 58-472 (852)
44 2vgl_B AP-2 complex subunit be 99.8 2.1E-15 7.1E-20 152.9 33.8 376 30-454 49-458 (591)
45 2vgl_B AP-2 complex subunit be 99.7 8.1E-16 2.8E-20 155.9 22.8 301 31-356 87-419 (591)
46 3grl_A General vesicular trans 99.7 2.4E-14 8.3E-19 139.5 30.0 373 27-402 119-553 (651)
47 1oyz_A Hypothetical protein YI 99.7 3.4E-15 1.2E-19 136.8 21.5 259 69-395 19-278 (280)
48 2bpt_A Importin beta-1 subunit 99.7 8.2E-15 2.8E-19 156.2 25.4 403 31-454 370-812 (861)
49 1oyz_A Hypothetical protein YI 99.7 9.1E-15 3.1E-19 134.0 21.3 255 29-352 22-278 (280)
50 2bpt_A Importin beta-1 subunit 99.7 1.3E-14 4.3E-19 154.7 25.2 397 30-452 266-710 (861)
51 1w63_A Adapter-related protein 99.6 1E-14 3.4E-19 148.4 22.2 362 30-453 107-490 (618)
52 1qgr_A Protein (importin beta 99.6 2.4E-14 8.3E-19 152.8 24.4 399 30-452 172-678 (876)
53 1ibr_B P95, importin beta-1 su 99.6 9.7E-15 3.3E-19 144.0 18.7 391 32-455 3-439 (462)
54 1u6g_C TIP120 protein, CAND1; 99.6 8.3E-14 2.8E-18 153.8 25.8 407 31-454 7-464 (1230)
55 1qgr_A Protein (importin beta 99.6 4.9E-14 1.7E-18 150.5 23.0 408 31-454 367-828 (876)
56 1w63_A Adapter-related protein 99.6 1.4E-13 4.8E-18 139.9 24.5 383 30-469 142-597 (618)
57 1ibr_B P95, importin beta-1 su 99.6 1.2E-14 4E-19 143.4 14.2 360 31-402 36-440 (462)
58 1u6g_C TIP120 protein, CAND1; 99.6 1.5E-13 5.1E-18 151.7 22.1 399 30-452 86-547 (1230)
59 3ltm_A Alpha-REP4; protein eng 99.5 4.9E-12 1.7E-16 110.4 18.6 188 30-274 19-206 (211)
60 3ltj_A Alpharep-4; protein eng 99.4 4.7E-12 1.6E-16 109.6 17.7 184 30-270 14-197 (201)
61 3ltj_A Alpharep-4; protein eng 99.4 1.5E-11 5E-16 106.5 19.8 184 116-355 14-197 (201)
62 3ltm_A Alpha-REP4; protein eng 99.4 8.7E-12 3E-16 108.8 18.3 187 72-315 18-204 (211)
63 2vgl_A Adaptor protein complex 99.4 2.7E-11 9.2E-16 122.7 21.9 367 31-454 112-510 (621)
64 2vgl_A Adaptor protein complex 99.3 6.9E-10 2.4E-14 112.4 28.3 332 31-400 75-434 (621)
65 2db0_A 253AA long hypothetical 99.1 1.3E-08 4.3E-13 81.6 19.2 218 114-357 30-247 (253)
66 3tjz_B Coatomer subunit gamma; 99.1 9E-09 3.1E-13 95.1 21.1 279 30-353 68-350 (355)
67 4ady_A RPN2, 26S proteasome re 99.1 9.8E-09 3.3E-13 105.3 23.2 275 30-358 392-678 (963)
68 3b2a_A TON_1937, putative unch 99.0 1.9E-08 6.5E-13 84.3 17.3 226 199-451 32-259 (265)
69 4gmo_A Putative uncharacterize 99.0 5.1E-09 1.8E-13 107.5 15.8 220 69-313 31-257 (684)
70 2db0_A 253AA long hypothetical 99.0 1.4E-07 4.8E-12 75.7 18.8 216 71-314 30-246 (253)
71 3b2a_A TON_1937, putative unch 98.9 1.5E-07 5.2E-12 78.9 18.1 189 29-231 32-220 (265)
72 3tjz_B Coatomer subunit gamma; 98.9 2.8E-08 9.7E-13 91.8 14.4 241 32-309 106-348 (355)
73 4ady_A RPN2, 26S proteasome re 98.9 4.5E-07 1.5E-11 93.2 24.5 271 73-399 392-676 (963)
74 2qk2_A LP04448P; mini spindles 98.9 1.7E-08 5.8E-13 89.8 12.4 187 161-358 18-207 (242)
75 1ho8_A Vacuolar ATP synthase s 98.9 8.4E-07 2.9E-11 83.8 24.1 323 114-452 75-475 (480)
76 4gmo_A Putative uncharacterize 98.8 1.5E-08 5.3E-13 103.9 12.5 196 200-399 35-258 (684)
77 2qk2_A LP04448P; mini spindles 98.8 2.4E-08 8.4E-13 88.8 10.0 186 119-314 18-205 (242)
78 2qk1_A Protein STU2; STU2P, XM 98.7 8.9E-08 3E-12 85.1 12.2 191 163-356 21-220 (249)
79 2qk1_A Protein STU2; STU2P, XM 98.7 1.2E-07 4.2E-12 84.2 13.0 190 78-271 21-220 (249)
80 2iw3_A Elongation factor 3A; a 98.6 4.4E-06 1.5E-10 87.0 22.0 303 30-355 14-323 (986)
81 1wa5_C Importin alpha RE-expor 98.6 1.1E-05 3.6E-10 86.7 25.3 389 30-455 35-527 (960)
82 1wa5_C Importin alpha RE-expor 98.6 2.1E-05 7.3E-10 84.3 26.5 344 34-400 89-526 (960)
83 2x1g_F Cadmus; transport prote 98.5 5.1E-05 1.8E-09 81.6 28.8 397 42-454 256-723 (971)
84 1te4_A Conserved protein MTH18 98.5 4.7E-08 1.6E-12 77.7 3.3 122 71-227 10-131 (131)
85 1ho8_A Vacuolar ATP synthase s 98.5 5.6E-05 1.9E-09 71.5 24.3 321 30-356 77-476 (480)
86 1te4_A Conserved protein MTH18 98.4 4E-08 1.4E-12 78.1 1.2 120 241-396 11-130 (131)
87 2iw3_A Elongation factor 3A; a 98.4 4.6E-05 1.6E-09 79.5 21.7 304 121-457 19-328 (986)
88 2x19_B Importin-13; nuclear tr 98.3 0.00041 1.4E-08 74.6 27.6 402 30-454 241-715 (963)
89 2x1g_F Cadmus; transport prote 98.2 3E-05 1E-09 83.4 17.9 337 42-400 365-761 (971)
90 3dad_A FH1/FH2 domain-containi 98.2 2.7E-05 9.2E-10 69.9 14.3 187 202-389 120-326 (339)
91 4hat_C Exportin-1; heat repeat 98.2 0.00062 2.1E-08 72.7 26.6 340 41-402 206-621 (1023)
92 3m1i_C Exportin-1; heat repeat 98.2 0.0027 9.1E-08 68.8 31.8 355 30-402 138-572 (1049)
93 3dad_A FH1/FH2 domain-containi 98.1 7.1E-05 2.4E-09 67.2 15.2 156 32-190 120-288 (339)
94 2x19_B Importin-13; nuclear tr 98.1 0.00058 2E-08 73.4 24.0 340 83-455 459-848 (963)
95 4hat_C Exportin-1; heat repeat 98.0 0.0014 4.8E-08 70.0 25.6 315 74-403 195-573 (1023)
96 3m1i_C Exportin-1; heat repeat 98.0 0.0019 6.5E-08 69.9 26.0 342 41-401 206-620 (1049)
97 3ibv_A Exportin-T; karyopherin 97.9 0.00062 2.1E-08 72.5 20.0 417 7-454 215-731 (980)
98 3oc3_A Helicase MOT1, MOT1; re 97.8 0.00025 8.7E-09 67.5 12.8 255 31-352 175-432 (800)
99 3ibv_A Exportin-T; karyopherin 97.7 0.00049 1.7E-08 73.3 15.4 305 41-359 204-569 (980)
100 4ffb_C Protein STU2; tubulin f 97.5 0.0024 8.3E-08 57.5 14.7 193 30-231 10-214 (278)
101 3gjx_A Exportin-1; transport, 97.5 0.026 8.9E-07 60.2 24.3 310 78-404 211-600 (1073)
102 2of3_A ZYG-9; multifunctional 97.4 0.0029 1E-07 55.6 13.6 178 119-314 49-236 (266)
103 4ffb_C Protein STU2; tubulin f 97.4 0.0059 2E-07 54.9 16.0 190 247-455 14-214 (278)
104 1upk_A MO25 protein; transfera 97.3 0.02 6.8E-07 51.4 18.1 202 236-449 72-279 (341)
105 2of3_A ZYG-9; multifunctional 97.3 0.0013 4.6E-08 57.7 10.5 178 204-401 50-238 (266)
106 1upk_A MO25 protein; transfera 97.3 0.043 1.5E-06 49.3 19.7 225 199-436 77-313 (341)
107 3gjx_A Exportin-1; transport, 97.3 0.028 9.6E-07 60.0 21.6 297 41-359 218-598 (1073)
108 3oc3_A Helicase MOT1, MOT1; re 97.2 0.00091 3.1E-08 63.9 8.8 246 117-395 175-432 (800)
109 2fv2_A RCD1 required for cell 97.2 0.015 5.2E-07 49.8 15.0 186 213-401 14-226 (268)
110 3c2g_A SYS-1 protein; beta-cat 97.0 0.082 2.8E-06 47.4 17.8 313 92-451 261-616 (619)
111 1lrv_A LRV, leucine-rich repea 96.9 0.00044 1.5E-08 60.4 3.3 64 37-138 57-120 (244)
112 1lrv_A LRV, leucine-rich repea 96.9 0.00059 2E-08 59.6 4.0 88 80-222 57-144 (244)
113 3u0r_A Apoptosis inhibitor 5; 96.9 0.3 1E-05 46.1 21.8 291 85-404 40-363 (507)
114 2fv2_A RCD1 required for cell 96.8 0.045 1.5E-06 47.0 14.7 160 29-190 43-226 (268)
115 3u0r_A Apoptosis inhibitor 5; 96.8 0.092 3.1E-06 49.6 17.5 149 128-296 40-189 (507)
116 3l9t_A Putative uncharacterize 96.3 0.035 1.2E-06 47.2 10.8 143 162-325 74-218 (240)
117 2f31_A Diaphanous protein homo 96.2 0.034 1.1E-06 48.3 10.6 141 298-445 67-220 (233)
118 3l9t_A Putative uncharacterize 96.2 0.14 4.9E-06 43.6 13.9 145 74-240 72-218 (240)
119 3a6p_A Exportin-5; exportin-5, 96.1 2 7E-05 46.9 25.9 299 32-357 13-381 (1204)
120 3c2g_A SYS-1 protein; beta-cat 96.0 0.082 2.8E-06 47.4 11.5 162 218-382 261-450 (619)
121 2f31_A Diaphanous protein homo 95.6 0.66 2.3E-05 40.0 16.0 139 50-190 21-182 (233)
122 3a6p_A Exportin-5; exportin-5, 95.4 0.7 2.4E-05 50.6 19.0 283 88-400 27-381 (1204)
123 3eg5_B Protein diaphanous homo 95.4 0.085 2.9E-06 49.4 10.3 161 275-443 101-284 (383)
124 1lsh_A Lipovitellin (LV-1N, LV 95.4 1.8 6E-05 46.6 21.6 160 172-360 408-580 (1056)
125 3ebb_A Phospholipase A2-activa 95.3 0.74 2.5E-05 41.4 15.8 173 74-253 104-287 (304)
126 3ebb_A Phospholipase A2-activa 95.2 1.7 5.7E-05 39.1 18.1 185 245-449 106-302 (304)
127 3eg5_B Protein diaphanous homo 95.2 1.1 3.7E-05 41.9 17.0 155 33-190 69-248 (383)
128 1lsh_A Lipovitellin (LV-1N, LV 94.4 2.1 7.3E-05 46.0 19.0 167 117-316 392-578 (1056)
129 2bnx_A Diaphanous protein homo 94.2 0.53 1.8E-05 44.1 12.4 139 298-443 71-222 (386)
130 2bnx_A Diaphanous protein homo 93.7 3.9 0.00013 38.2 17.2 139 51-191 26-187 (386)
131 3o2t_A Symplekin; heat repeat, 93.3 5 0.00017 37.2 20.2 88 45-143 40-127 (386)
132 1vdy_A Hypothetical protein (R 92.9 0.32 1.1E-05 37.8 6.9 79 371-460 50-137 (140)
133 3o2t_A Symplekin; heat repeat, 92.2 4.1 0.00014 37.8 14.6 174 175-357 41-257 (386)
134 1x5b_A Signal transducing adap 91.9 0.25 8.6E-06 39.8 5.5 76 371-457 53-129 (163)
135 3qml_C Protein SLS1, nucleotid 91.5 1.4 4.7E-05 39.1 9.9 135 257-399 43-189 (315)
136 3qml_C Protein SLS1, nucleotid 91.4 2.3 7.8E-05 37.7 11.3 149 199-355 21-188 (315)
137 3gs3_A Symplekin, LD45768P; he 91.3 6.9 0.00024 34.0 20.9 99 34-143 19-117 (257)
138 3fga_B Serine/threonine-protei 89.4 9.1 0.00031 35.6 14.1 235 107-357 120-367 (403)
139 3ldz_A STAM-1, signal transduc 88.4 0.97 3.3E-05 35.3 6.0 72 328-399 43-114 (140)
140 3g2s_A C-terminal fragment of 87.8 1.5 5.1E-05 34.6 6.7 73 328-400 49-127 (149)
141 1x5b_A Signal transducing adap 86.5 0.98 3.3E-05 36.3 5.1 74 30-103 52-125 (163)
142 1mhq_A ADP-ribosylation factor 86.3 1.4 4.8E-05 34.7 5.8 71 328-398 39-115 (148)
143 3ldz_A STAM-1, signal transduc 85.3 1.8 6.3E-05 33.7 6.0 76 371-457 43-118 (140)
144 1mhq_A ADP-ribosylation factor 85.0 2.8 9.7E-05 33.0 7.0 76 371-457 39-120 (148)
145 1juq_A ADP-ribosylation factor 84.8 3.1 0.00011 33.7 7.3 74 371-455 51-130 (171)
146 2npp_B PP2A, B subunit, serine 84.3 20 0.00067 34.0 13.5 236 106-357 152-400 (449)
147 3g2s_A C-terminal fragment of 83.7 2.6 9E-05 33.2 6.3 74 371-455 49-128 (149)
148 1juq_A ADP-ribosylation factor 82.2 1.7 5.8E-05 35.2 4.8 71 328-398 51-127 (171)
149 2npp_B PP2A, B subunit, serine 81.6 21 0.0007 33.8 12.5 228 30-276 162-404 (449)
150 3zyq_A Hepatocyte growth facto 81.2 1.1 3.8E-05 38.3 3.5 74 30-103 45-118 (226)
151 1vsy_5 Proteasome activator BL 80.5 4.1 0.00014 43.3 8.2 221 160-400 135-366 (997)
152 3gs3_A Symplekin, LD45768P; he 79.3 31 0.0011 29.9 13.1 131 174-313 30-172 (257)
153 1dvp_A HRS, hepatocyte growth 77.0 1.7 5.9E-05 37.0 3.4 74 30-103 42-115 (220)
154 1vsy_5 Proteasome activator BL 74.8 13 0.00044 39.5 9.9 215 117-355 134-364 (997)
155 3zyq_A Hepatocyte growth facto 71.6 8.4 0.00029 32.8 6.4 74 371-455 46-120 (226)
156 2jak_A Serine/threonine-protei 71.2 20 0.00068 33.2 9.1 191 197-394 171-362 (392)
157 1dvp_A HRS, hepatocyte growth 70.4 11 0.00039 31.8 7.0 74 371-455 43-117 (220)
158 3s4w_B Protein FACD2, fanconi 68.3 1.4E+02 0.0049 32.6 18.2 264 74-356 193-507 (1323)
159 1elk_A Target of MYB1; superhe 68.0 15 0.00051 29.1 6.7 76 371-457 54-134 (157)
160 1vdy_A Hypothetical protein (R 67.1 12 0.00039 29.0 5.6 71 328-400 50-131 (140)
161 1elk_A Target of MYB1; superhe 65.9 9.1 0.00031 30.4 5.1 72 328-399 54-130 (157)
162 2jak_A Serine/threonine-protei 65.3 86 0.003 29.0 13.6 81 109-190 167-247 (392)
163 3fga_B Serine/threonine-protei 61.5 1E+02 0.0035 28.6 17.6 237 198-457 127-370 (403)
164 1vsy_4 Proteasome activator BL 58.1 1.7E+02 0.0059 30.1 15.4 112 117-229 340-455 (799)
165 3gae_A Protein DOA1; UFD3, CDC 56.3 43 0.0015 28.9 8.1 130 91-231 71-219 (253)
166 2b6c_A Hypothetical protein EF 55.2 92 0.0032 26.0 10.6 134 169-325 65-199 (220)
167 3pst_A Protein DOA1; protein d 55.1 32 0.0011 32.2 7.3 130 91-231 243-391 (425)
168 3ut4_A CTHE_2751, putative unc 54.9 20 0.00069 27.3 4.9 95 328-454 32-131 (134)
169 1vsy_4 Proteasome activator BL 54.8 2E+02 0.0067 29.7 16.6 101 169-271 349-455 (799)
170 3l3f_X Protein DOA1, DOA1/UFD3 53.9 28 0.00097 31.8 6.7 130 91-231 180-328 (362)
171 3rru_A TOM1L1 protein; structu 49.9 30 0.001 27.2 5.5 76 371-457 54-134 (152)
172 3vld_A DNA mismatch repair pro 47.0 2E+02 0.0067 27.4 14.3 145 30-189 73-226 (500)
173 2xpp_A IWS1, ECU08_0440; trans 42.2 1.2E+02 0.004 23.5 7.9 77 361-453 52-136 (145)
174 3gae_A Protein DOA1; UFD3, CDC 41.8 30 0.001 29.9 4.8 102 83-189 100-218 (253)
175 3pst_A Protein DOA1; protein d 40.9 47 0.0016 31.0 6.1 131 217-357 243-390 (425)
176 3l3f_X Protein DOA1, DOA1/UFD3 40.0 32 0.0011 31.4 4.8 131 217-357 180-327 (362)
177 3rru_A TOM1L1 protein; structu 39.0 38 0.0013 26.6 4.5 73 328-400 54-131 (152)
178 1w9c_A CRM1 protein, exportin 36.5 2.3E+02 0.008 25.3 15.3 181 257-454 44-246 (321)
179 1sz9_A PCF11 protein; RNA poly 32.3 1.1E+02 0.0038 23.6 6.2 71 285-356 44-114 (144)
180 2xpp_A IWS1, ECU08_0440; trans 31.4 1.8E+02 0.0062 22.5 9.8 77 105-186 50-134 (145)
181 3nfq_A Transcription factor IW 31.1 1.6E+02 0.0054 23.5 6.8 76 363-454 69-152 (170)
182 3jxy_A Alkylpurine DNA glycosy 26.9 1.1E+02 0.0039 25.7 5.9 83 243-333 132-214 (232)
183 2b6c_A Hypothetical protein EF 26.8 2.7E+02 0.0093 23.1 11.7 141 76-240 58-199 (220)
184 3btp_B Protein VIRE1; TIM barr 26.0 23 0.00079 21.7 0.9 18 466-486 19-38 (63)
185 3vld_A DNA mismatch repair pro 25.8 4.4E+02 0.015 25.1 16.6 189 30-231 116-319 (500)
186 3s4w_B Protein FACD2, fanconi 25.4 1.9E+02 0.0065 31.6 8.3 129 169-303 410-538 (1323)
187 1wjt_A Transcription elongatio 25.2 94 0.0032 22.4 4.2 36 417-452 47-83 (103)
188 1sz9_A PCF11 protein; RNA poly 21.5 2.7E+02 0.0092 21.4 6.6 74 199-272 42-115 (144)
189 4flb_A Regulation of nuclear P 20.0 1.9E+02 0.0064 21.7 5.4 61 160-230 10-70 (132)
No 1
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=5.5e-58 Score=457.45 Aligned_cols=446 Identities=48% Similarity=0.825 Sum_probs=388.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011328 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
.++.+++.++|+|++.|+.|+..++++++.+++++++.+++.|++|.|+++|++++++.+|..|+|+|+|++.++++.+.
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 48899999999999999999999999999988888999999999999999998776689999999999999998999999
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc----cHhHHHHHHHHHHHh
Q 011328 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA----KLSMLRNATWTLSNF 186 (488)
Q Consensus 111 ~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~----~~~v~~~a~~~L~~l 186 (488)
.+++.|++|.|+++|+++++++++.|+|+|+||+.+++.++..+.+.|++++++.++.... ...+++.++|+++++
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999995322 245788999999999
Q ss_pred hcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHH
Q 011328 187 CRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265 (488)
Q Consensus 187 ~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~ 265 (488)
+.+. +........+++|.|++++.+++++++..++++|.+++....+..+.+.+.|+++.|+.++.++++.++..++++
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a 297 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence 9987 555666678999999999999999999999999999999888888888899999999999999999999999999
Q ss_pred HhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHH
Q 011328 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK 345 (488)
Q Consensus 266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~ 345 (488)
|++++.+++.....+++.|+++.|+.+|.++ +..+++.|+|+|+|++.++++.++.+.+.|+++.|+.++.+++.+++.
T Consensus 298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~ 376 (510)
T 3ul1_B 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK 376 (510)
T ss_dssp HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred HHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHH
Confidence 9999999988888999999999999999998 899999999999999999899999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhcc
Q 011328 346 EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEG 425 (488)
Q Consensus 346 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 425 (488)
.|+|+|.|++..++.++..++.+.|+++.|+++|+.+|++++..++++|.+++..+++.. ..+.+...++++||
T Consensus 377 ~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~------~~~~~~~~iee~gg 450 (510)
T 3ul1_B 377 EAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG------ETEKLSIMIEECGG 450 (510)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc------chHHHHHHHHHcCc
Confidence 999999999998889999999999999999999999999999999999999998876432 34568899999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCC--CCCCCCCCCccccCCCCCCCCCCCCcC
Q 011328 426 LEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEP--LPPGDATQAGFGFAGNGLPVPSGGFNF 487 (488)
Q Consensus 426 ~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (488)
+++|+.|++++|++|+++|..++++||+.|+|+|+ .|+.. +.+|.|+.+. .|||+|||
T Consensus 451 l~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~ 510 (510)
T 3ul1_B 451 LDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETT--SEGFAFQVQD--GAPGTFNF 510 (510)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHCC------------------------------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCC--ccccccCCCC--CCCCCCCC
Confidence 99999999999999999999999999998776665 56543 4568887553 38899998
No 2
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=8.5e-57 Score=451.53 Aligned_cols=447 Identities=47% Similarity=0.813 Sum_probs=388.5
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
..++.+++.+.|+|++.+..|+..++++++.+++++.+.+++.|++|.|+++|+.++++.++..|+|+|++++.++++.+
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 46899999999999999999999999999988788899999999999999999877668999999999999999899999
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc----cHhHHHHHHHHHHH
Q 011328 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA----KLSMLRNATWTLSN 185 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~----~~~v~~~a~~~L~~ 185 (488)
..+++.|+++.|+.+|.++++++++.|+|+|+||+.+++.++..+.+.|++++++.++.... ...+++.++|++++
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999995322 24578899999999
Q ss_pred hhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHH
Q 011328 186 FCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264 (488)
Q Consensus 186 l~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~ 264 (488)
++.+. +........+++|.|+.++.++++.++..++++|.+++....+..+.+.+.|+++.|+.+|.++++.++..++.
T Consensus 236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~ 315 (529)
T 3tpo_A 236 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 315 (529)
T ss_dssp HHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred HHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHH
Confidence 99987 55566677899999999999999999999999999999988888888889999999999999999999999999
Q ss_pred HHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 011328 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK 344 (488)
Q Consensus 265 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 344 (488)
+|++++.+++.....+++.|+++.|+.+|.++ +..+++.|+|+|+|++.+++.....+++.|+++.|+.++.+++.+++
T Consensus 316 aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~ 394 (529)
T 3tpo_A 316 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ 394 (529)
T ss_dssp HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHH
Confidence 99999999988888999999999999999998 89999999999999999989999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhc
Q 011328 345 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAE 424 (488)
Q Consensus 345 ~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g 424 (488)
..|+|+|+|++..+++++..++.+.|+++.|+++|+.+|++++..++++|.+++..++... ..+.+...++++|
T Consensus 395 ~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~------~~~~~~~~iee~g 468 (529)
T 3tpo_A 395 KAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG------ETEKLSIMIEECG 468 (529)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc------ChHHHHHHHHHCC
Confidence 9999999999998889999999999999999999999999999999999999998876432 3455888999999
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCC--CCCCCCCCCccccCCCCCCCCCCCCcC
Q 011328 425 GLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEP--LPPGDATQAGFGFAGNGLPVPSGGFNF 487 (488)
Q Consensus 425 ~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (488)
|+++|+.|++|+|++|+++|..++++||+.|+++|+ +|+.. +.+|.|+++. .+||||||
T Consensus 469 gl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~f~f 529 (529)
T 3tpo_A 469 GLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETT--SEGFAFQVQD--GAPGTFNF 529 (529)
T ss_dssp CHHHHTGGGGCSSHHHHHHHHHHHHHHC-------------------------------------
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCC--CcccccCCCC--CCCCCCCC
Confidence 999999999999999999999999999998766655 56544 4468888653 37899998
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=8.9e-49 Score=394.82 Aligned_cols=443 Identities=84% Similarity=1.294 Sum_probs=391.2
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
..+|.+++.|.++++.++..|++.|.++++....+....++..|+++.|+++|.+++++.++..|+++|++++.++++.+
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 56999999999999999999999999998877557788999999999999999987658999999999999999889999
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
..+++.|+++.|+.+|.++++.++..|+++|++++.+.+.++..+.+.|+++.|+.++..+.+..++..++|+|.+++..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999998888999999999999999997778899999999999999998
Q ss_pred CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011328 190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 269 (488)
Q Consensus 190 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l 269 (488)
.+........++++.++.++.++++.++..++++|++++...+...+.+++.|+++.|+.+|.++++.++..|+++|+++
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl 313 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI 313 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 76777777899999999999999999999999999999988887778889999999999999999999999999999999
Q ss_pred hcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHH
Q 011328 270 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW 349 (488)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~ 349 (488)
+.+++.....+++.++++.|+.+|.++.++.++..|+|+|+|++.++++....+++.|+++.|+.++.++++.++..|++
T Consensus 314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~ 393 (528)
T 4b8j_A 314 VTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAW 393 (528)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 99888888888999999999999987757899999999999999988888999999999999999999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHH
Q 011328 350 AISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKI 429 (488)
Q Consensus 350 aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L 429 (488)
+|++++..++++...++.+.|+++.|+.++..++++++..++++|.+++...+....... ...+.+...+.+.|+++.|
T Consensus 394 aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l 472 (528)
T 4b8j_A 394 AISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAA-GDVNVFSQMIDEAEGLEKI 472 (528)
T ss_dssp HHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHT-CSCCHHHHHHHHTTHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccc-ccccHHHHHHHHCCcHHHH
Confidence 999999887789999999999999999999999999999999999999988765332111 1345689999999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccc
Q 011328 430 ENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGF 473 (488)
Q Consensus 430 ~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (488)
..++++++++++++|..++++||+.++++|-.|.++..+.+|.|
T Consensus 473 ~~L~~~~~~~v~~~a~~il~~~~~~e~~~~~~~~~~~~~~~~~~ 516 (528)
T 4b8j_A 473 ENLQSHDNNEIYEKAVKILEAYWMDEEDDTMGATTVAAPQGATF 516 (528)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHHCC--------------------
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCCcccccccccCCCcccccee
Confidence 99999999999999999999999987776655555555555544
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=5e-46 Score=374.67 Aligned_cols=426 Identities=58% Similarity=0.894 Sum_probs=387.4
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
+.++.+++.|+++++.++..|++.|.++++..+.+....+++.|+++.|+++|.+++++.++..|+++|++++.++++.+
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 67999999999999999999999999998876456678888999999999999997338999999999999999888899
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
..+++.|+++.|+.+|.++++.++..|+++|++++.+.+..+..+...|+++.|+.++ .+.+..++..++|+|.+++.+
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~ 245 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRG 245 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999888889999999999999999 558889999999999999988
Q ss_pred C-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011328 190 K-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268 (488)
Q Consensus 190 ~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 268 (488)
. +........++++.++.++.++++.++..++++|.+++...++..+.+++.++++.|+.++.++++.++..|+++|++
T Consensus 246 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~ 325 (530)
T 1wa5_B 246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 325 (530)
T ss_dssp SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHH
Confidence 7 666677778999999999999999999999999999998877777888888999999999999999999999999999
Q ss_pred hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHH
Q 011328 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA 348 (488)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 348 (488)
++.+++...+.+++.++++.|+.+|.++ ++.++..|+|+|+|++.++++..+.+++.|+++.|+.++.++++.++..|+
T Consensus 326 l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~ 404 (530)
T 1wa5_B 326 IVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEAC 404 (530)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 9998888888888899999999999999 899999999999999998888888999999999999999999999999999
Q ss_pred HHHHHhccCCCH--HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccH
Q 011328 349 WAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGL 426 (488)
Q Consensus 349 ~aL~~l~~~~~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 426 (488)
++|++++..+++ +....+.+.|+++.|+.++++++++++..++++|.+++...+..... .....+.+...+.+.|++
T Consensus 405 ~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~-~~~~~~~~~~~l~~~g~~ 483 (530)
T 1wa5_B 405 WAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEA-RGLNINENADFIEKAGGM 483 (530)
T ss_dssp HHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHH-HTCSSCHHHHHHHHTTHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhc-ccccccHHHHHHHHcCcH
Confidence 999999987666 78888999999999999999999999999999999999877653210 001235588999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 011328 427 EKIENLQSHDNTEIYEKAVKILETYWVEEDED 458 (488)
Q Consensus 427 ~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 458 (488)
+.|..++++++++++++|..++++||+.++++
T Consensus 484 ~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~~ 515 (530)
T 1wa5_B 484 EKIFNCQQNENDKIYEKAYKIIETYFGEEEDA 515 (530)
T ss_dssp HHHHGGGGCSCHHHHHHHHHHHHHHSSSCC--
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence 99999999999999999999999999987764
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=1.8e-44 Score=356.61 Aligned_cols=426 Identities=61% Similarity=0.959 Sum_probs=380.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHc-CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011328 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
++.+++.|+++++.++..|+..|.++++....+..+.++.. |+++.|+++|++++++.++..|+++|.+++..+++...
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 78899999999999999999999998874434556777777 99999999999983399999999999999998888888
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC
Q 011328 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 190 (488)
Q Consensus 111 ~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~ 190 (488)
.+++.|+++.|+++++++++.++..|+++|++++.+.+..+..+.+.|+++.++.++..+.+..++..++|+|.+++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 88899999999999999999999999999999999988888889999999999999954578999999999999999876
Q ss_pred -CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011328 191 -PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 269 (488)
Q Consensus 191 -~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l 269 (488)
+........+++|.++.++.++++.++..++++|.+++...++....+.+.++++.|+.++.++++.++..|+++|+++
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 5555555689999999999999999999999999999988777777788889999999999999999999999999999
Q ss_pred hcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHH
Q 011328 270 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW 349 (488)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~ 349 (488)
+.+.+...+.+++.++++.++.++.++ ++.+|..|+++|+|++.++++..+.+++.|+++.|+.++.+++++++..|++
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~ 340 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAW 340 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 998887777788889999999999998 8999999999999999988888888999999999999999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHH
Q 011328 350 AISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKI 429 (488)
Q Consensus 350 aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L 429 (488)
+|++++...+++....+.+.|+++.|++++++++++++..++++|.+++...+..... +....+++...+.+.|+++.|
T Consensus 341 ~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~l 419 (450)
T 2jdq_A 341 AITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKR-NGTGINPYCALIEEAYGLDKI 419 (450)
T ss_dssp HHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHH-SCSCCCHHHHHHHHHHCHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhc-cccchhHHHHHHHHcCcHHHH
Confidence 9999998767788888889999999999999999999999999999999876643221 011235689999999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 011328 430 ENLQSHDNTEIYEKAVKILETYWVEEDEDE 459 (488)
Q Consensus 430 ~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~ 459 (488)
..++++++.++++.|..++++||+.|+++|
T Consensus 420 ~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~ 449 (450)
T 2jdq_A 420 EFLQSHENQEIYQKAFDLIEHYFGTEDEDS 449 (450)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHCCC----
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCcccccC
Confidence 999999999999999999999998877654
No 6
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=4.7e-40 Score=328.06 Aligned_cols=378 Identities=26% Similarity=0.404 Sum_probs=335.0
Q ss_pred CCCCChhhHHHHhhhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHH
Q 011328 15 LKPMDPMFFIIQLQLESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFE 93 (488)
Q Consensus 15 ~~~~~~~~~~~~~~~~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~ 93 (488)
..|++.+++. |.+|.|+++|++ +++.+|..|+++|.+++++. .+..+.+++.|++|.|+++|++++ ++++..
T Consensus 90 ~ppi~~ii~~-----G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~ 162 (510)
T 3ul1_B 90 QPPIDNIIRA-----GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQ 162 (510)
T ss_dssp CCCHHHHHHT-----THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHH
T ss_pred CchHHHHHHC-----CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHH
Confidence 4567778888 999999999985 66899999999999998876 677888999999999999999999 999999
Q ss_pred HHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCC-----HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc
Q 011328 94 AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT-----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN 168 (488)
Q Consensus 94 a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~ 168 (488)
|+++|++++.++++.|..+.+.|+++.|+.++...+ ..+...+++++.+++.+...........++++.|+.++
T Consensus 163 A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL- 241 (510)
T 3ul1_B 163 AVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL- 241 (510)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-
Confidence 999999999988999999999999999999998743 45788999999999987655445555567889999999
Q ss_pred ccccHhHHHHHHHHHHHhhcCCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHH
Q 011328 169 EHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 247 (488)
Q Consensus 169 ~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L 247 (488)
.+.++.++..++|+|.+++..... .......++++.|+.++.+++..++..++++|++++..++.....+++.|+++.|
T Consensus 242 ~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L 321 (510)
T 3ul1_B 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVF 321 (510)
T ss_dssp TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGC
T ss_pred hcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHH
Confidence 788899999999999999987632 2334557899999999999999999999999999999888888889999999999
Q ss_pred HHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHc
Q 011328 248 VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEA 326 (488)
Q Consensus 248 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~ 326 (488)
+.+|.++++.++..|+++|+|++.+++.....+.+.|+++.|+.++.++ +..+|++|+|+|+|++. ++.+.+..+++.
T Consensus 322 ~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~ 400 (510)
T 3ul1_B 322 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHC 400 (510)
T ss_dssp C-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHT
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHC
Confidence 9999999999999999999999999998899999999999999999999 99999999999999998 678888999999
Q ss_pred CChHHHHHHHhcCChhHHHHHHHHHHHhccC-----CCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011328 327 GIIGPLVNLLLNAEFEIKKEAAWAISNATSG-----GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 401 (488)
Q Consensus 327 ~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~-----~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 401 (488)
|+++.|+++|.+++++++..++++|.|+... ........+.+.|+++.|..+..+++.++.+.|...|.+.+..+
T Consensus 401 g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~ 480 (510)
T 3ul1_B 401 GIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE 480 (510)
T ss_dssp TCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 9999999999999999999999999999742 22344556778899999999999999999999999998887543
No 7
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=2.3e-39 Score=324.98 Aligned_cols=377 Identities=26% Similarity=0.404 Sum_probs=333.7
Q ss_pred CCCChhhHHHHhhhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHH
Q 011328 16 KPMDPMFFIIQLQLESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEA 94 (488)
Q Consensus 16 ~~~~~~~~~~~~~~~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a 94 (488)
.|++.+++. |.+|.|+++|++ +++.++..|+++|.+++++. .+....+++.|++|.|+.+|.+++ ++++..|
T Consensus 110 ~~i~~ii~~-----G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A 182 (529)
T 3tpo_A 110 PPIDNIIRA-----GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQA 182 (529)
T ss_dssp CCHHHHHHT-----THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHH
T ss_pred chHHHHHHC-----CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHH
Confidence 455667777 999999999974 66999999999999998875 667788999999999999999999 9999999
Q ss_pred HHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCC-----HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc
Q 011328 95 AWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT-----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE 169 (488)
Q Consensus 95 ~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 169 (488)
+++|++++.++++.+..+++.|+++.|+.++..++ ..+...++|++.+++.+...........++++.|+.++ .
T Consensus 183 ~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~ 261 (529)
T 3tpo_A 183 VWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-H 261 (529)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-c
Confidence 99999999988999999999999999999998643 45788999999999987655445555567889999999 7
Q ss_pred cccHhHHHHHHHHHHHhhcCCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHH
Q 011328 170 HAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 248 (488)
Q Consensus 170 ~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~ 248 (488)
+.++.++..++|+|.+++..... .......++++.|+.++.+++..++..++++|++++..++.....+++.|+++.|+
T Consensus 262 ~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~ 341 (529)
T 3tpo_A 262 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFP 341 (529)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHH
Confidence 88999999999999999987632 33345579999999999999999999999999999998888888899999999999
Q ss_pred HhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHcC
Q 011328 249 ELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAG 327 (488)
Q Consensus 249 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~ 327 (488)
.++.++++.++..|+++|++++.+++.....+++.|+++.++.++.++ +.+++..|+|+|+|++. ++++.+..+++.|
T Consensus 342 ~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g 420 (529)
T 3tpo_A 342 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCG 420 (529)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCc
Confidence 999999999999999999999999998888999999999999999999 99999999999999997 5788889999999
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccC-----CCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011328 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSG-----GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 401 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~-----~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 401 (488)
+++.|+++|.++|++++..++++|.++... ........+.+.|+++.|..+..+++.++...|..+|.+.+..+
T Consensus 421 ~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~ 499 (529)
T 3tpo_A 421 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE 499 (529)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 999999999999999999999999999742 22344556778899999999999999999999999998887543
No 8
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=2.3e-36 Score=304.72 Aligned_cols=401 Identities=18% Similarity=0.218 Sum_probs=342.3
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328 29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
.|.+|.|++.|+++++.++..|+++|.+++... ......+.+.|+++.|++++++++ ++++..++.+|.+++.++++.
T Consensus 100 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~ 177 (529)
T 1jdh_A 100 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQES 177 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHH
Confidence 389999999999999999999999999998765 455777778999999999999988 899999999999999988999
Q ss_pred hHHHHhCCCHHHHHHhhCCC-CHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011328 109 TRVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 187 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~~L~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~ 187 (488)
+..+.+.|+++.|+.++++. ....+..++.+|.+++.. +..+..+.+.|+++.++.++ .+.++.++..++|+|.+++
T Consensus 178 ~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~ 255 (529)
T 1jdh_A 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLS 255 (529)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHh
Confidence 99999999999999999874 566777889999999975 45688888999999999999 6668899999999999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC--CCcchHhHHHHH
Q 011328 188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRT 265 (488)
Q Consensus 188 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~ 265 (488)
...+.. ....+++|.+++++.++++.++..++++|++++..+++..+.+.+.|+++.|++++.+ .++.++..|+++
T Consensus 256 ~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~ 333 (529)
T 1jdh_A 256 DAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 333 (529)
T ss_dssp TTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHH
Confidence 876332 2346899999999999999999999999999998877778889999999999999975 347899999999
Q ss_pred HhHhhcCCch---hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChh
Q 011328 266 VGNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE 342 (488)
Q Consensus 266 L~~l~~~~~~---~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~ 342 (488)
|++++..++. .+..+.+.++++.|+++|.++.++.++..++|+++|++.+ ++....+.+.|+++.|+.++.+++++
T Consensus 334 L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~ 412 (529)
T 1jdh_A 334 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQD 412 (529)
T ss_dssp HHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC-hhhhHHHHHcCCHHHHHHHHHHHhHH
Confidence 9999986543 3556778899999999999884469999999999999986 44457888999999999999988888
Q ss_pred HHHHHHHHHHH----------------------hccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011328 343 IKKEAAWAISN----------------------ATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 343 v~~~a~~aL~~----------------------l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~ 400 (488)
+|..|+|++.| ++. .++.+..+.+.|+++.|+.++.+++++++..+.++|.++...
T Consensus 413 v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~--~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~ 490 (529)
T 1jdh_A 413 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490 (529)
T ss_dssp HC-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc--CchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC
Confidence 88877766665 443 345667788999999999999999999999999999998743
Q ss_pred hhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 011328 401 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY 451 (488)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~ 451 (488)
.+ ++..+.+.|+++.|.+++++++++|+..|.+++.++
T Consensus 491 ~~-------------~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 491 KE-------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HH-------------HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HH-------------HHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 22 578899999999999999999999999999999876
No 9
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=2.4e-37 Score=314.52 Aligned_cols=367 Identities=15% Similarity=0.141 Sum_probs=317.0
Q ss_pred ccHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCCccHHHHH-HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc
Q 011328 30 ESLPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 106 (488)
Q Consensus 30 ~~i~~l~~~L~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~ 106 (488)
..++.++++|.++ +++++..|++.|..+... .+....++ +.|++|.|+++|++++ +.++..|+++|+|++.+++
T Consensus 377 ~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d 453 (810)
T 3now_A 377 KLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYE 453 (810)
T ss_dssp HHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCch
Confidence 3467788888887 899999999999997543 34455555 5799999999999988 8999999999999998542
Q ss_pred h-----------------------------hh---HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHH
Q 011328 107 E-----------------------------NT---RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV 154 (488)
Q Consensus 107 ~-----------------------------~~---~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 154 (488)
+ .+ ..+++.|+++.|+.+++++++.+++.|+|+|+|++.+ ++++..+
T Consensus 454 ~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~V 532 (810)
T 3now_A 454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKV 532 (810)
T ss_dssp CCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHH
T ss_pred hhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 1 12 6788999999999999999999999999999999975 5589999
Q ss_pred HhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCCh---hhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccC
Q 011328 155 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF---EQTRPALPALERLIHSN-DDEVLTDACWALSYLSDG 230 (488)
Q Consensus 155 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~---~~~~~~~~~l~~ll~~~-~~~v~~~al~~L~~l~~~ 230 (488)
.+.|++++|+.++ .+.++..++.|+|+|.+++.+...... ....+++|.|+.+|.++ +...+..++++|.|++..
T Consensus 533 v~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~ 611 (810)
T 3now_A 533 VQEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM 611 (810)
T ss_dssp HHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS
T ss_pred HHCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC
Confidence 9999999999999 667788999999999999875422111 12356899999999865 344567899999999998
Q ss_pred CchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhh-CCChHHHHHHhcccchhhHHHHHHHHH
Q 011328 231 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPCLLDLLTQNYKKSIKKEACWTI 309 (488)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~~lL~~~~~~~v~~~a~~~L 309 (488)
+++..+.+++.|+++.|+.++.++++.++..|+++|+|++.+.+ ....+.+ .+.++.|+.++.++ +..+|+.|+|+|
T Consensus 612 ~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~AL 689 (810)
T 3now_A 612 NESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED-VIKMFEGNNDRVKFLALLCEDE-DEETATACAGAL 689 (810)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH-HHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH-HHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 87778889999999999999999999999999999999998655 4445554 78999999999998 899999999999
Q ss_pred HHHhcCCHHHHHHHHH-cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC---CHH
Q 011328 310 SNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP---DPR 385 (488)
Q Consensus 310 ~nl~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~---~~~ 385 (488)
+|++.+++..++.+++ .|+++.|++++.+++.+++..|+|+|.|++.. +.+....+.+.|+++.|.++++.+ +.+
T Consensus 690 anLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~ 768 (810)
T 3now_A 690 AIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAK 768 (810)
T ss_dssp HHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHH
T ss_pred HHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHH
Confidence 9999977888999998 89999999999999999999999999999984 578899999999999999999765 689
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 011328 386 IVTVCLEGLENILKAGEAE 404 (488)
Q Consensus 386 v~~~al~~L~~l~~~~~~~ 404 (488)
+++.++++|.++++.+.-.
T Consensus 769 i~e~Al~aL~~ll~~g~~~ 787 (810)
T 3now_A 769 AREVATQCLAAAERYRIIE 787 (810)
T ss_dssp HHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHhCCCcc
Confidence 9999999999999887643
No 10
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=6.4e-37 Score=300.70 Aligned_cols=365 Identities=18% Similarity=0.209 Sum_probs=308.7
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHH
Q 011328 74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 153 (488)
Q Consensus 74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (488)
.+|.|+++|++++ ++++..|+++|.+++..++..+..+.+.|+++.|+++|+++++.++..|+++|.||+.++++.+..
T Consensus 3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5899999999998 899999999999999877888889999999999999999999999999999999999987888999
Q ss_pred HHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc--------c--------CChhHH
Q 011328 154 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--------S--------NDDEVL 217 (488)
Q Consensus 154 ~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~--------~--------~~~~v~ 217 (488)
+.+.|+++.|+++|..+.++.+++.++|+|++++........... |++|.|++++. + .+..+.
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 999999999999995477899999999999999998544443455 99999999993 2 245677
Q ss_pred HHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHhcCC------CCcchHhHHHHHHhHhhcC------------------
Q 011328 218 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTG------------------ 272 (488)
Q Consensus 218 ~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~a~~~L~~l~~~------------------ 272 (488)
..++++|.|++.. ++..+.+.+. |+++.|+.++.+ .+..+.+.++.+|.+++..
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 7999999999987 6677778887 999999999975 4567888899999988731
Q ss_pred --------------------------------CchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHH--
Q 011328 273 --------------------------------DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN-- 318 (488)
Q Consensus 273 --------------------------------~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-- 318 (488)
.+...+.+++.++++.++.+|.+..++.++..|+|+|+|++.++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 1123344556778899999998776789999999999999985432
Q ss_pred -HH-HHHH-HcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC------HHHHHH
Q 011328 319 -QI-QAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD------PRIVTV 389 (488)
Q Consensus 319 -~~-~~l~-~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~------~~v~~~ 389 (488)
.. +..+ +.|++|.|+++|.+++.+++..|+|+|.|++.+. + ...++..++++.|+++|...+ +++...
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~-~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~ 396 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--L-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS 396 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--G-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--H-HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence 22 3444 5899999999999999999999999999998743 3 344556689999999999764 368889
Q ss_pred HHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC-CHHHHHHHHHHHHHhcCCCC
Q 011328 390 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-NTEIYEKAVKILETYWVEED 456 (488)
Q Consensus 390 al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~-~~~v~~~a~~~l~~~~~~~~ 456 (488)
++.+|.+++..+.. +...+.+.|+++.|.+++.++ ++++++.|.++|++||..++
T Consensus 397 ~l~~l~ni~~~~~~------------~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 397 ACYTVRNLMASQPQ------------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHTTCTH------------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHhcCHH------------HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 99999999865442 477888999999999999999 99999999999999997654
No 11
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=9e-37 Score=294.31 Aligned_cols=371 Identities=18% Similarity=0.190 Sum_probs=295.7
Q ss_pred HHhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCC-----------hhHHHH
Q 011328 25 IQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF-----------PQLQFE 93 (488)
Q Consensus 25 ~~~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-----------~~v~~~ 93 (488)
+..+++.++.++..+.+.|+. ...+.|..+... .+....+++.|++|.|+++|+..+. ++++..
T Consensus 27 ~~~~~~~~~~l~~~~~~~~~~---~~~~~ll~~~~~--~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (458)
T 3nmz_A 27 LGTKVEMVYSLLSMLGTHDKD---DMSRTLLAMSSS--QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARAR 101 (458)
T ss_dssp ------------------CCH---HHHHHHHHHHSS--TTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHH
T ss_pred cCchHHHHHHHHHHhcCCCHH---HHHHHHHHHHcC--CcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHH
Confidence 355678889999999987776 255666665432 4555888999999999999997542 699999
Q ss_pred HHHHHHHhcCCCchhhHHHHhCCCH----------HHHHHhhCCC--CHH-----HHH-------HHHHHHhhhhCCCch
Q 011328 94 AAWALTNIASGTSENTRVVIDHGAV----------PIFVRLLSSP--TDD-----VRE-------QAVWALGNVAGDSPK 149 (488)
Q Consensus 94 a~~~L~~l~~~~~~~~~~~~~~g~i----------~~L~~~L~~~--~~~-----v~~-------~a~~~L~~l~~~~~~ 149 (488)
|+|+|.||+.+.++......+.+++ +.+++++.+. +.+ +++ .|+|+|+|++.+ ++
T Consensus 102 a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e 180 (458)
T 3nmz_A 102 ASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EE 180 (458)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HH
Confidence 9999999999888888887777777 6667777653 222 555 899999999766 77
Q ss_pred hHHHHHhcCChHHHHHHhcc----------cccHhHHHHHHHHHHHhhcCCCCCChhh--hhchHHHHHHhhccCChhHH
Q 011328 150 CRDLVLSNGALMPLLAQFNE----------HAKLSMLRNATWTLSNFCRGKPQPLFEQ--TRPALPALERLIHSNDDEVL 217 (488)
Q Consensus 150 ~~~~~~~~~~l~~L~~ll~~----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~--~~~~~~~l~~ll~~~~~~v~ 217 (488)
+|+.+.+.|++++|+.++.. +.++.++..|+|+|.+|+.+.+...... ..|++|.|+.+|++++++++
T Consensus 181 ~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~ 260 (458)
T 3nmz_A 181 HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQ 260 (458)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHH
Confidence 89999999999999999942 2457789999999999998864233222 46779999999999999999
Q ss_pred HHHHHHHHHhccC-CchhHHHHHHhCCHHHHHHhc-CCCCcchHhHHHHHHhHhhcCCchhhHHHh-hCCChHHHHHHhc
Q 011328 218 TDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLT 294 (488)
Q Consensus 218 ~~al~~L~~l~~~-~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~lL~ 294 (488)
..++++|++++.. ++.....+.+.|+++.|+++| .+.++.+++.|+.+|++++.+++.....+. ..|+++.|+.+|.
T Consensus 261 ~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~ 340 (458)
T 3nmz_A 261 QVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLT 340 (458)
T ss_dssp HHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhc
Confidence 9999999999975 456667788999999999975 557789999999999999985555555565 7899999999998
Q ss_pred ccchh---hHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHH
Q 011328 295 QNYKK---SIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS 368 (488)
Q Consensus 295 ~~~~~---~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~ 368 (488)
+..+. .++..|+|+|.|++. ++++.++.+.+.|+++.|+.+|.+++..++++|+++|.|++.. ++++...+.+
T Consensus 341 ~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~ 419 (458)
T 3nmz_A 341 YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWD 419 (458)
T ss_dssp CCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHH
Confidence 77232 599999999999997 6789999999999999999999999999999999999999864 5788999999
Q ss_pred CCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011328 369 QGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 369 ~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 402 (488)
.|+++.|+++++++++++++.|+++|.+|+...+
T Consensus 420 ~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 420 MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999999999999987643
No 12
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=305.57 Aligned_cols=405 Identities=19% Similarity=0.224 Sum_probs=347.5
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328 29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
.+.++.|++.|+++++.++..|+++|.+++... ......+.+.|+++.|+++|++++ ++++..++.+|.+++..+++.
T Consensus 97 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~ 174 (644)
T 2z6h_A 97 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQES 174 (644)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHH
Confidence 389999999999999999999999999998875 566777788999999999999998 899999999999999878999
Q ss_pred hHHHHhCCCHHHHHHhhCCC-CHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011328 109 TRVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 187 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~~L~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~ 187 (488)
+..+.+.|+++.|++++++. ...++..++.+|.+++.. +..+..+.+.|+++.++.++ .+.+..++..++++|.+++
T Consensus 175 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~ 252 (644)
T 2z6h_A 175 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLS 252 (644)
T ss_dssp HHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHG
T ss_pred HHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999874 477889999999999965 45688899999999999999 6668999999999999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC--CcchHhHHHHH
Q 011328 188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRT 265 (488)
Q Consensus 188 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~ 265 (488)
...+.. ....++++.+++++++.++.++..++++|.+++..++...+.+.+.|+++.|+.++.+. .+.++..|+++
T Consensus 253 ~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~a 330 (644)
T 2z6h_A 253 DAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 330 (644)
T ss_dssp GGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHH
Confidence 875332 33468999999999999999999999999999998777778889999999999999763 36899999999
Q ss_pred HhHhhcCCch---hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC--
Q 011328 266 VGNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE-- 340 (488)
Q Consensus 266 L~~l~~~~~~---~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~-- 340 (488)
|++++...+. ....+.+.++++.|+++|.++.++.+++.++|+|+|++.+.. ....+.+.|+++.|++++.+++
T Consensus 331 L~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~-~~~~i~~~~~i~~Lv~lL~~~~~~ 409 (644)
T 2z6h_A 331 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQD 409 (644)
T ss_dssp HHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH-HHHHHHHcCCHHHHHHHHhccchh
Confidence 9999975442 234467889999999999987447999999999999998644 4478889999999999998754
Q ss_pred --------------------hhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011328 341 --------------------FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 341 --------------------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~ 400 (488)
.+++..++.+|.+++.. ......+.+.|+++.|++++.+++++++..++.+|.++...
T Consensus 410 vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~ 487 (644)
T 2z6h_A 410 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD--VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487 (644)
T ss_dssp HTTC----------CCSSCHHHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred hhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcC--HHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 34566777777777753 36667888999999999999999999999999999998754
Q ss_pred hhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHH--------------------HHHHHHHhcCCC
Q 011328 401 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK--------------------AVKILETYWVEE 455 (488)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~--------------------a~~~l~~~~~~~ 455 (488)
.+ ++..+.+.|+++.|.+++.+++++++.. +..++.+||..+
T Consensus 488 ~~-------------~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~ 549 (644)
T 2z6h_A 488 KE-------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTE 549 (644)
T ss_dssp HH-------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCS
T ss_pred HH-------------HHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCC
Confidence 22 5788999999999999999999999554 455677777665
No 13
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=2.4e-36 Score=307.12 Aligned_cols=408 Identities=16% Similarity=0.146 Sum_probs=336.7
Q ss_pred hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc-
Q 011328 28 QLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS- 106 (488)
Q Consensus 28 ~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~- 106 (488)
.-|.++.++.++.|+++.++..|++++.+.+++ ...++.+++.|+ +.|+.++++++ +.+|..|+.+|++++....
T Consensus 288 ~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~--~~~R~~I~~~gv-~~L~~Ll~s~~-~~vr~~Al~~L~kl~s~~~~ 363 (810)
T 3now_A 288 REGILQMILAMATTDDELQQRVACECLIAASSK--KDKAKALCEQGV-DILKRLYHSKN-DGIRVRALVGLCKLGSYGGQ 363 (810)
T ss_dssp TTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS--HHHHHTTHHHHH-HHHHHHTTCSC-HHHHHHHHHHHHHHHTTTTT
T ss_pred ccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--cHHHHHHHHcCc-HHHHHHHcCCC-HHHHHHHHHHHHHhcccccc
Confidence 349999999999999999999999999996554 567777778775 99999999888 8999999999999985222
Q ss_pred hhhHHHHhCCC----HHHHHHhhCCC--CHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHH
Q 011328 107 ENTRVVIDHGA----VPIFVRLLSSP--TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT 180 (488)
Q Consensus 107 ~~~~~~~~~g~----i~~L~~~L~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~ 180 (488)
+.....++.|. ++.+.++|.++ ++++++.|+|+|++++.+.+.......+.|+++.|+.++ ++.++.++..++
T Consensus 364 d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL-~s~d~~i~~~al 442 (810)
T 3now_A 364 DAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLA-RGGNQSCLYGVV 442 (810)
T ss_dssp TTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHH-HTTCGGGHHHHH
T ss_pred CccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHh-CCCChHHHHHHH
Confidence 22223333343 56778888887 899999999999999987665444555679999999999 678899999999
Q ss_pred HHHHHhhcCCCCC---------------------------------ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHh
Q 011328 181 WTLSNFCRGKPQP---------------------------------LFEQTRPALPALERLIHSNDDEVLTDACWALSYL 227 (488)
Q Consensus 181 ~~L~~l~~~~~~~---------------------------------~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l 227 (488)
++|.|++.+.+.. ......|++|.++.+++++++.+++.++|+|+|+
T Consensus 443 ~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NL 522 (810)
T 3now_A 443 TTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAV 522 (810)
T ss_dssp HHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999864211 1233468999999999999999999999999999
Q ss_pred ccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHH--HhhCCChHHHHHHhcccchhhHHHHH
Q 011328 228 SDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQC--IINHQALPCLLDLLTQNYKKSIKKEA 305 (488)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~--~~~~~~~~~L~~lL~~~~~~~v~~~a 305 (488)
+.. ++....+++.|+++.|+.+|.++++..++.|+++|++++.+....... ....++++.|+.+|.++.+...+..|
T Consensus 523 A~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eA 601 (810)
T 3now_A 523 CGL-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFES 601 (810)
T ss_dssp HTS-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHH
T ss_pred cCC-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHH
Confidence 965 457788999999999999999999999999999999998754322110 01135899999999865334456789
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHH-CCChHHHHhhcCCCCH
Q 011328 306 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS-QGCIKPLCDLLNCPDP 384 (488)
Q Consensus 306 ~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~ 384 (488)
+++|.|++..+++.++.+++.|+++.|+.++.++++.++..|+++|+|++.+ ++....+.+ .|.++.|+.++++++.
T Consensus 602 l~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~--~~~~~~~v~~~g~l~~Lv~LL~s~d~ 679 (810)
T 3now_A 602 LMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS--EDVIKMFEGNNDRVKFLALLCEDEDE 679 (810)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS--HHHHHHHHSSSSHHHHHHHGGGCSSH
T ss_pred HHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--hHHHHHHHhccCcHHHHHHHhcCCCH
Confidence 9999999998888899999999999999999999999999999999999974 356666665 6899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011328 385 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 385 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~ 454 (488)
.++..|+++|.++....+.. ....+...|+++.|.+++.+++.++++.|.+.+.++...
T Consensus 680 ~vq~~Aa~ALanLt~~s~~~-----------~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 680 ETATACAGALAIITSVSVKC-----------CEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp HHHHHHHHHHHHHHHHCHHH-----------HHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCHHH-----------HHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999998743321 133444389999999999999999999999999999774
No 14
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=7.4e-36 Score=300.51 Aligned_cols=369 Identities=25% Similarity=0.357 Sum_probs=327.7
Q ss_pred ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328 30 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 30 ~~i~~l~~~L~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
+.+|.|++.|.++ ++.++..|+++|.+++... .+....++..|+++.|+++|++++ +.++..|+++|++++..+++.
T Consensus 130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccc
Confidence 9999999999987 8999999999999988754 456777888999999999999988 999999999999999977899
Q ss_pred hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328 109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 188 (488)
+..+...|+++.|+.++.+.++.++..++++|++++.+...........++++.|+.++ .+.++.++..++++|.+++.
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD 286 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999977622234455678999999999 67789999999999999998
Q ss_pred CCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011328 189 GKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 267 (488)
Q Consensus 189 ~~~~-~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~ 267 (488)
..+. .......++++.++.++.++++.++..++++|++++...+...+.+++.|+++.|+.+|.++++.++..|+++|+
T Consensus 287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~ 366 (530)
T 1wa5_B 287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS 366 (530)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6522 223334689999999999999999999999999999888777788888999999999999999999999999999
Q ss_pred HhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CH--HHHHHHHHcCChHHHHHHHhcCChhHH
Q 011328 268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NV--NQIQAIIEAGIIGPLVNLLLNAEFEIK 344 (488)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~--~~~~~l~~~~~l~~L~~ll~~~~~~v~ 344 (488)
+++.+++...+.+++.++++.|+.+|.++ ++.++..|+|+|+|++.. .+ +....+++.|+++.|+.++.++++.++
T Consensus 367 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 445 (530)
T 1wa5_B 367 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 445 (530)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence 99998887888888899999999999988 899999999999999983 45 778888999999999999999999999
Q ss_pred HHHHHHHHHhccCCCH----------HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011328 345 KEAAWAISNATSGGSN----------EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 345 ~~a~~aL~~l~~~~~~----------~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 402 (488)
..++++|.+++..... .....+.+.|+++.|..++.+++++++..+..+|.+++...+
T Consensus 446 ~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~ 513 (530)
T 1wa5_B 446 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEE 513 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 9999999999864321 245678889999999999999999999999999999886544
No 15
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=5.7e-36 Score=301.44 Aligned_cols=375 Identities=24% Similarity=0.356 Sum_probs=332.1
Q ss_pred CChhhHHHHhhhccHHHHHHHhcCCC-HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHH
Q 011328 18 MDPMFFIIQLQLESLPAMVAGVWSDD-RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAW 96 (488)
Q Consensus 18 ~~~~~~~~~~~~~~i~~l~~~L~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~ 96 (488)
...++.. |.+|.|++.|.+++ +.++..|+++|.++++.. .+....+++.|+++.|+.+|.+++ +.++..|++
T Consensus 110 ~~~~~~~-----g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~ 182 (528)
T 4b8j_A 110 IEEVIQS-----GVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVW 182 (528)
T ss_dssp HHHHHHT-----TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHH
T ss_pred HHHHHHC-----CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHH
Confidence 4445555 99999999999876 999999999999998764 567788889999999999999988 999999999
Q ss_pred HHHHhcCCCchhhHHHHhCCCHHHHHHhh-CCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhH
Q 011328 97 ALTNIASGTSENTRVVIDHGAVPIFVRLL-SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSM 175 (488)
Q Consensus 97 ~L~~l~~~~~~~~~~~~~~g~i~~L~~~L-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v 175 (488)
+|++++..++..+..+.+.|+++.|+.++ .+.++.++..++|+|++++...+.. ......++++.|+.++ .+.++.+
T Consensus 183 aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL-~~~~~~v 260 (528)
T 4b8j_A 183 ALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLI-HSNDEEV 260 (528)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHT-TCCCHHH
T ss_pred HHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHH-CCCCHHH
Confidence 99999997888999999999999999999 5688999999999999999876433 3344578999999999 7788999
Q ss_pred HHHHHHHHHHhhcCCCCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC
Q 011328 176 LRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 254 (488)
Q Consensus 176 ~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 254 (488)
+..++++|.+++...+.. ......++++.++.++.++++.++..++++|++++...+...+.+++.|+++.|+.+|.++
T Consensus 261 ~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~ 340 (528)
T 4b8j_A 261 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQN 340 (528)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCC
Confidence 999999999999775322 3344568999999999999999999999999999998888888888999999999999998
Q ss_pred -CcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHH
Q 011328 255 -SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPL 332 (488)
Q Consensus 255 -~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L 332 (488)
++.++..|+++|++++.+++.....+++.++++.|+.+|.++ +..++..|+++|+|++.+ +++....+++.|+++.|
T Consensus 341 ~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L 419 (528)
T 4b8j_A 341 LKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPL 419 (528)
T ss_dssp CCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHH
Confidence 899999999999999998888888888999999999999998 999999999999999984 78889999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHhccCCCH----------HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011328 333 VNLLLNAEFEIKKEAAWAISNATSGGSN----------EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 333 ~~ll~~~~~~v~~~a~~aL~~l~~~~~~----------~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 402 (488)
+.++..++++++..++++|.+++..... .....+.+.|+++.+..+.++++++++..+..++.+++...+
T Consensus 420 ~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~ 499 (528)
T 4b8j_A 420 CDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEE 499 (528)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC---
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence 9999999999999999999999864422 356778889999999999999999999999999999876543
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=1e-35 Score=293.82 Aligned_cols=368 Identities=25% Similarity=0.345 Sum_probs=324.0
Q ss_pred ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328 30 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 30 ~~i~~l~~~L~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
+.+|.|++.|+++ ++.++..|+++|.+++... .+....+++.|+++.|+++|++++ +++|..|+++|++++..+++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~ 141 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC 141 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence 7899999999988 8999999999999998764 456677788999999999999988 999999999999999988889
Q ss_pred hHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCC-chhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHh
Q 011328 109 TRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 186 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l 186 (488)
+..+++.|+++.|+.++.+ .+..++..++++|++++.+. +....... .++++.++.++ .+.++.++..++|+|.++
T Consensus 142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l 219 (450)
T 2jdq_A 142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLL-FVSDTDVLADACWALSYL 219 (450)
T ss_dssp HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence 9999999999999999996 78999999999999999765 33222222 67899999999 677899999999999999
Q ss_pred hcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHH
Q 011328 187 CRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265 (488)
Q Consensus 187 ~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~ 265 (488)
+... +........++++.++.++.++++.++..++++|++++...+...+.+.+.|+++.|+.++.++++.++..|+++
T Consensus 220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~ 299 (450)
T 2jdq_A 220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299 (450)
T ss_dssp TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence 9865 222333446899999999999999999999999999999887777778888999999999999999999999999
Q ss_pred HhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 011328 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIK 344 (488)
Q Consensus 266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 344 (488)
|++++.+++...+.+++.++++.++.++.++ ++.+|..|+|+|+|++.+ +++..+.+++.|+++.|+.++.+++++++
T Consensus 300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 378 (450)
T 2jdq_A 300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV 378 (450)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence 9999998888888888889999999999998 899999999999999984 67888888899999999999999999999
Q ss_pred HHHHHHHHHhccCCCH----------HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011328 345 KEAAWAISNATSGGSN----------EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 345 ~~a~~aL~~l~~~~~~----------~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 402 (488)
..|+++|.+++..+.. .....+.+.|+++.|..++++++++++..+..+|.+++...+
T Consensus 379 ~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 446 (450)
T 2jdq_A 379 QVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTED 446 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 9999999999874422 234677788999999999999999999999999999985443
No 17
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=5.8e-34 Score=297.24 Aligned_cols=402 Identities=20% Similarity=0.219 Sum_probs=343.2
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328 29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
.|.++.|++.|+++++.++..|+++|.+++... ......+.+.|+++.|+++|++++ .+++..++.+|.+++..+++.
T Consensus 233 ~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~ 310 (780)
T 2z6g_A 233 SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQES 310 (780)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHH
Confidence 389999999999999999999999999998765 456677778999999999999988 899999999999999878999
Q ss_pred hHHHHhCCCHHHHHHhhCCCC-HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011328 109 TRVVIDHGAVPIFVRLLSSPT-DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 187 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~~L~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~ 187 (488)
+..+.+.|+++.|+.++++.+ ...+..++.+|.+++... ..+..+.+.|+++.|+.++ .+.+..++..++++|.+++
T Consensus 311 ~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~ 388 (780)
T 2z6g_A 311 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLS 388 (780)
T ss_dssp HHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST-THHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHh
Confidence 999999999999999999754 566778899999999754 4678888999999999999 6678889999999999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CC-cchHhHHHHH
Q 011328 188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PS-PSVLIPALRT 265 (488)
Q Consensus 188 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~-~~v~~~a~~~ 265 (488)
..... .....++++.++.++++.++.++..++++|++++..++.....+.+.++++.|+.+|.+ ++ +.++..|+++
T Consensus 389 ~~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~a 466 (780)
T 2z6g_A 389 DAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 466 (780)
T ss_dssp TTCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHH
Confidence 87633 22346899999999999999999999999999999887777888889999999999976 33 3899999999
Q ss_pred HhHhhcCCchh---hHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC--
Q 011328 266 VGNIVTGDDMQ---TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE-- 340 (488)
Q Consensus 266 L~~l~~~~~~~---~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~-- 340 (488)
|++++...+.. ...+...++++.|+.+|.++..+.++..|+|+|+|++.+ +.....+.+.|+++.|++++.+++
T Consensus 467 L~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~ 545 (780)
T 2z6g_A 467 LRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQD 545 (780)
T ss_dssp HHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-HHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHHhcchh
Confidence 99998755432 346678899999999999884459999999999999986 555678889999999999998654
Q ss_pred --------------------hhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011328 341 --------------------FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 341 --------------------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~ 400 (488)
.+++..++.+|.+++. +++....+.+.|+++.|++++.++++.++..++.+|.++...
T Consensus 546 ~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~ 623 (780)
T 2z6g_A 546 TQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 623 (780)
T ss_dssp HHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 3466678888888875 457777788999999999999999999999999999999743
Q ss_pred hhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011328 401 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 452 (488)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~ 452 (488)
.+ ++..+.+.|+++.|.+++++++++|+..|...|.++.
T Consensus 624 ~~-------------~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~ 662 (780)
T 2z6g_A 624 KE-------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 662 (780)
T ss_dssp HH-------------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HH-------------HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 22 5888999999999999999999999766544444333
No 18
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=5.1e-36 Score=294.28 Aligned_cols=364 Identities=16% Similarity=0.191 Sum_probs=303.2
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011328 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
.+|.+++.|+++++.++..|+++|.+++... ......+.+.|++|.|+++|++++ ++++..|+++|.+++.++++++.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 5889999999999999999999999987543 445668889999999999999988 99999999999999997799999
Q ss_pred HHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc--------c-------ccHh
Q 011328 111 VVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--------H-------AKLS 174 (488)
Q Consensus 111 ~~~~~g~i~~L~~~L~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--------~-------~~~~ 174 (488)
.+++.|+++.|+++|+ ++++++++.++|+|+|++.+ +..+..+.+ |+++.|+.++.. . .++.
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence 9999999999999999 78999999999999999988 557888888 999999999931 1 3567
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhhh-chHHHHHHhhcc------CChhHHHHHHHHHHHhccCC----------------
Q 011328 175 MLRNATWTLSNFCRGKPQPLFEQTR-PALPALERLIHS------NDDEVLTDACWALSYLSDGT---------------- 231 (488)
Q Consensus 175 v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~l~~ll~~------~~~~v~~~al~~L~~l~~~~---------------- 231 (488)
+++.|+|+|.+|+.+.+....+... |+++.|+.++++ .+..+++.++.+|.+++...
T Consensus 159 v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~ 238 (457)
T 1xm9_A 159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238 (457)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccc
Confidence 8889999999999873333333334 999999999986 46778889999999886310
Q ss_pred ----------------------------------chhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHHHhHhhcCCchh
Q 011328 232 ----------------------------------NDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQ 276 (488)
Q Consensus 232 ----------------------------------~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~ 276 (488)
+...+.+++.++++.++.+|.+ +++.+++.|+++|+|++.++...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~ 318 (457)
T 1xm9_A 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM 318 (457)
T ss_dssp ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred cccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcc
Confidence 1122334455678888888865 46889999999999999876542
Q ss_pred h----HHHh-hCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCh------hHHH
Q 011328 277 T----QCII-NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF------EIKK 345 (488)
Q Consensus 277 ~----~~~~-~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~------~v~~ 345 (488)
. +.++ +.++++.|+++|.++ +.++++.|+|+|.|++.+ ++ .+.++..++++.|+++|..+++ ++..
T Consensus 319 ~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~-~~-~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~ 395 (457)
T 1xm9_A 319 SSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-PL-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILS 395 (457)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-GG-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred hHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcC-HH-HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHH
Confidence 1 3333 689999999999999 899999999999999885 33 3455566899999999998743 6888
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhh
Q 011328 346 EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 346 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~ 402 (488)
.++++|.++.... ++....+.+.|+++.|.+++.++ +++++..|.+.|.+++...+
T Consensus 396 ~~l~~l~ni~~~~-~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 396 SACYTVRNLMASQ-PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHHTTC-THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 9999999998754 57888888999999999999999 89999999999999885543
No 19
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=2.8e-35 Score=289.89 Aligned_cols=373 Identities=19% Similarity=0.210 Sum_probs=306.5
Q ss_pred CCChhhHHHHhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHH
Q 011328 17 PMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAW 96 (488)
Q Consensus 17 ~~~~~~~~~~~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~ 96 (488)
|-+.-++. +.+|.+++.|.++++.++..|+++|.+++... .+....+++.|++|.|+++|++++ ++++..|++
T Consensus 40 ~~~~~~~~-----~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~ 112 (584)
T 3l6x_A 40 PPPPNWRQ-----PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACG 112 (584)
T ss_dssp CCCCCCCC-----CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHH
T ss_pred CCCCCccc-----ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHH
Confidence 33444555 88999999999999999999999999987654 677888899999999999999998 999999999
Q ss_pred HHHHhcCC-CchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc------
Q 011328 97 ALTNIASG-TSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN------ 168 (488)
Q Consensus 97 ~L~~l~~~-~~~~~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~------ 168 (488)
+|.||+.+ +++++..+++.|+|+.|+++|++ .+.++++.++++|++|+.. +..+..+.+ ++++.|++++.
T Consensus 113 AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~ 190 (584)
T 3l6x_A 113 ALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGW 190 (584)
T ss_dssp HHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCC
T ss_pred HHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhcccccc
Confidence 99999985 68999999999999999999997 6889999999999999985 456777775 57999999872
Q ss_pred -----------ccccHhHHHHHHHHHHHhhcCCCC-CChhh-hhchHHHHHHhhcc------CChhHHHHHHHHHHHhcc
Q 011328 169 -----------EHAKLSMLRNATWTLSNFCRGKPQ-PLFEQ-TRPALPALERLIHS------NDDEVLTDACWALSYLSD 229 (488)
Q Consensus 169 -----------~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~-~~~~~~~l~~ll~~------~~~~v~~~al~~L~~l~~ 229 (488)
...++.++.+|+++|.||+...+. ...+. ..|+++.|+.++++ .+...++.++++|.|++.
T Consensus 191 ~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~ 270 (584)
T 3l6x_A 191 EREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSY 270 (584)
T ss_dssp C----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHT
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhc
Confidence 123578999999999999987633 33333 36778899999874 467899999999999986
Q ss_pred CCch-------------------------hHHHHHHhCCHHHHHHhcC-CCCcchHhHHHHHHhHhhcCCch----hhHH
Q 011328 230 GTND-------------------------KIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDM----QTQC 279 (488)
Q Consensus 230 ~~~~-------------------------~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~----~~~~ 279 (488)
.... ..+.+.+.++++.++.+|. +.++.+++.|+++|.|++.+... ....
T Consensus 271 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~ 350 (584)
T 3l6x_A 271 QVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSA 350 (584)
T ss_dssp THHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHH
T ss_pred cccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHH
Confidence 5210 1111223345677788885 46789999999999999986532 2223
Q ss_pred HhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--------ChhHHHHHHHHH
Q 011328 280 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--------EFEIKKEAAWAI 351 (488)
Q Consensus 280 ~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--------~~~v~~~a~~aL 351 (488)
+.+.++++.|+.+|.++ +..+++.|+|+|+|++.+.. .. ..+..|+++.|+++|.++ +.+++..|+++|
T Consensus 351 v~~~~glp~Lv~LL~s~-~~~v~~~A~~aL~nLs~~~~-~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL 427 (584)
T 3l6x_A 351 LRQEKALSAIADLLTNE-HERVVKAASGALRNLAVDAR-NK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTI 427 (584)
T ss_dssp HTSHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTCS-CH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhCChh-HH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHH
Confidence 44578899999999999 88999999999999998632 22 345788999999999886 357889999999
Q ss_pred HHhccCCCHHHHHHHHHCCChHHHHhhcCCC--CHHHHHHHHHHHHHHHHhhh
Q 011328 352 SNATSGGSNEQIKFLVSQGCIKPLCDLLNCP--DPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 352 ~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~al~~L~~l~~~~~ 402 (488)
.|++.. ++++.+.+.+.|+++.|++++++. .+.+++.|..+|.+++...+
T Consensus 428 ~NL~a~-~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 428 NEVIAE-NLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp HHHHTT-CHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred HHHhcC-CHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence 999864 578899999999999999999986 78999999999999987655
No 20
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.4e-34 Score=284.81 Aligned_cols=367 Identities=18% Similarity=0.216 Sum_probs=304.0
Q ss_pred HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCC-Cch
Q 011328 71 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD-SPK 149 (488)
Q Consensus 71 ~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~-~~~ 149 (488)
..+.++.|+++|.+++ ++++..|+++|.+++..+++++..+++.|+|+.|+++|+++++++++.|+++|.||+.+ +++
T Consensus 46 ~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred ccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 4678999999999998 99999999999999988999999999999999999999999999999999999999985 577
Q ss_pred hHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc------------------c
Q 011328 150 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH------------------S 211 (488)
Q Consensus 150 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~------------------~ 211 (488)
.+..+.+.|++++|+.+|....+..+++.++++|++|+.....+.... .+++|.|++++. .
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~-~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIV-DHALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHH-HHTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHH-hccHHHHHHHHhccccccccccccccccccc
Confidence 899999999999999999555678899999999999998654333333 678999999872 2
Q ss_pred CChhHHHHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHhcCC------CCcchHhHHHHHHhHhhcCCch---------
Q 011328 212 NDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTGDDM--------- 275 (488)
Q Consensus 212 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~--------- 275 (488)
.+..++..+.++|.|++..+++..+.+.+. |+++.|+.++++ .+...++.|+++|.||+.....
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 357999999999999999887766777775 566799998864 4567889999999999975211
Q ss_pred ----------------hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCH---HHHH-HHHHcCChHHHHHH
Q 011328 276 ----------------QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV---NQIQ-AIIEAGIIGPLVNL 335 (488)
Q Consensus 276 ----------------~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~---~~~~-~l~~~~~l~~L~~l 335 (488)
....+.+.++++.++.+|.+..++.+++.|+++|.||+.+.. ...+ .+.+.++++.|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 112223445577889999755488999999999999988642 2223 33456789999999
Q ss_pred HhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC--------CHHHHHHHHHHHHHHHHhhhhhhcc
Q 011328 336 LLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP--------DPRIVTVCLEGLENILKAGEAEKNM 407 (488)
Q Consensus 336 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--------~~~v~~~al~~L~~l~~~~~~~~~~ 407 (488)
|.+++..++..|+++|.||+.... ... .+..|+++.|+++|.++ ..+++..++++|.|++...+.
T Consensus 364 L~s~~~~v~~~A~~aL~nLs~~~~--~~~-~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~---- 436 (584)
T 3l6x_A 364 LTNEHERVVKAASGALRNLAVDAR--NKE-LIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE---- 436 (584)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTCS--CHH-HHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH----
T ss_pred HcCCCHHHHHHHHHHHHHHhCChh--HHH-HHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH----
Confidence 999999999999999999998653 223 34679999999999976 357889999999999866543
Q ss_pred CCCCccchHHHHHHhhccHHHHHHhhcCC--CHHHHHHHHHHHHHhcCC
Q 011328 408 GNTGGVNLFAQAIDDAEGLEKIENLQSHD--NTEIYEKAVKILETYWVE 454 (488)
Q Consensus 408 ~~~~~~~~~~~~l~~~g~~~~L~~l~~~~--~~~v~~~a~~~l~~~~~~ 454 (488)
....+.+.|+++.|.+++.+. ++++++.|..+|.++|..
T Consensus 437 --------~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 437 --------AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp --------HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred --------HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 366788999999999998775 899999999999999864
No 21
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=9.7e-35 Score=280.17 Aligned_cols=338 Identities=17% Similarity=0.175 Sum_probs=282.5
Q ss_pred hhcCCCC-ChhhHHHHhhhccHHHHHHHhcCC------------CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCH---
Q 011328 12 FSLLKPM-DPMFFIIQLQLESLPAMVAGVWSD------------DRNIQLDATTQFRKLLSIERSPPINEVIQSGVV--- 75 (488)
Q Consensus 12 ~~~~~~~-~~~~~~~~~~~~~i~~l~~~L~s~------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i--- 75 (488)
++-..|+ ..+++. |.+|.|+++|+.. +++++.+|+++|.+++++. ++..+...+.+++
T Consensus 56 ~~~~~~~~~~~~~~-----g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l 129 (458)
T 3nmz_A 56 MSSSQDSCISMRQS-----GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLL 129 (458)
T ss_dssp HHSSTTHHHHHHHH-----TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHC-----CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHH
Confidence 3334444 345666 9999999999963 3799999999999999987 6777777777777
Q ss_pred -------HHHHHhhcCCC-Chh-----HHH-------HHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC--------
Q 011328 76 -------PRFIEFLSRDD-FPQ-----LQF-------EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-------- 127 (488)
Q Consensus 76 -------~~L~~lL~~~~-~~~-----v~~-------~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~-------- 127 (488)
+.+++++.+.. +.+ +++ +|+++|.|++. ++++|+.+++.|+++.|+.+|..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~ 208 (458)
T 3nmz_A 130 EQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLT 208 (458)
T ss_dssp HHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTC
T ss_pred HHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccc
Confidence 66777776642 122 444 99999999987 69999999999999999999942
Q ss_pred ---CCHHHHHHHHHHHhhhhCCCchhHHHHHh-cCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC--CCCChhhhhch
Q 011328 128 ---PTDDVREQAVWALGNVAGDSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPA 201 (488)
Q Consensus 128 ---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~ 201 (488)
.++.++..|+|+|.||+.+++..+..+.. .|.++.|+.+| .+.++.++..++|+|.+|+... ..+......|+
T Consensus 209 ~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~Ga 287 (458)
T 3nmz_A 209 NDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGS 287 (458)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTH
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCC
Confidence 34779999999999999888766666654 45699999999 6788999999999999999852 23344556799
Q ss_pred HHHHHHhh-ccCChhHHHHHHHHHHHhccCCchhHHHHH-HhCCHHHHHHhcCCCCc----chHhHHHHHHhHhhc---C
Q 011328 202 LPALERLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLRHPSP----SVLIPALRTVGNIVT---G 272 (488)
Q Consensus 202 ~~~l~~ll-~~~~~~v~~~al~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~----~v~~~a~~~L~~l~~---~ 272 (488)
+|.|+++| ++.+..++..++.+|+|++...++....+. ..|+++.|+.+|.+.++ +++..|+++|.+++. .
T Consensus 288 I~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~ 367 (458)
T 3nmz_A 288 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 367 (458)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccC
Confidence 99999975 557899999999999999984434444455 68999999999988655 389999999999996 6
Q ss_pred CchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHH
Q 011328 273 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 352 (488)
Q Consensus 273 ~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~ 352 (488)
++..++.+.+.|+++.|+.+|.++ +..+++.|+|+|+|++.++++.+..+++.|+++.|+.++.+++..+++.|+++|.
T Consensus 368 ~~~~~~~i~~~G~i~~Lv~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~ 446 (458)
T 3nmz_A 368 NEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 446 (458)
T ss_dssp CHHHHHHHHHTTHHHHHHHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 788888899999999999999998 8899999999999999888999999999999999999999999999999999999
Q ss_pred HhccCC
Q 011328 353 NATSGG 358 (488)
Q Consensus 353 ~l~~~~ 358 (488)
|++.+.
T Consensus 447 nL~~~~ 452 (458)
T 3nmz_A 447 NLMANR 452 (458)
T ss_dssp HHHTCC
T ss_pred HHHcCC
Confidence 999764
No 22
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=8.4e-34 Score=286.04 Aligned_cols=403 Identities=16% Similarity=0.136 Sum_probs=339.9
Q ss_pred ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328 30 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 30 ~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
+.++.+++.|.+ +++.++..|+.+|.++... .+....+.+.|+++.|+++|++++ +.++..|+++|.+++..+++.
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~ 135 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence 789999999975 5899999999999997553 457788889999999999999998 999999999999999976788
Q ss_pred hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328 109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 188 (488)
+..+.+.|+++.|++++.+++++++..++.+|.+++..+++.+..+.+.|+++.++.++....+...+..++.+|.+++.
T Consensus 136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 215 (529)
T 1jdh_A 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215 (529)
T ss_dssp HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999998888888999999999999999666667788889999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011328 189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268 (488)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 268 (488)
...........++++.++.++.++++.++..++++|.+++...+... ...++++.|++++.+++++++..++++|++
T Consensus 216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 292 (529)
T 1jdh_A 216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN 292 (529)
T ss_dssp STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 66555555567999999999999999999999999999997654321 123788999999999999999999999999
Q ss_pred hhcCCchhhHHHhhCCChHHHHHHhcccc-hhhHHHHHHHHHHHHhcCCHH---HHHHHHHcCChHHHHHHHhcCC-hhH
Q 011328 269 IVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVN---QIQAIIEAGIIGPLVNLLLNAE-FEI 343 (488)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~l~~L~~ll~~~~-~~v 343 (488)
++..++.....+.+.++++.+++++.+.. ++.++..|+++|+|++.++++ .+..+.+.|+++.|++++.+++ +.+
T Consensus 293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v 372 (529)
T 1jdh_A 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 372 (529)
T ss_dssp HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHH
Confidence 99987778888899999999999998642 378999999999999885332 4567888999999999999886 599
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHH----------------------HHHhh
Q 011328 344 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN----------------------ILKAG 401 (488)
Q Consensus 344 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~----------------------l~~~~ 401 (488)
+..++++|.|++... +....+.+.|+++.|++++++++++++..+.+++.+ +....
T Consensus 373 ~~~a~~~l~nl~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~ 450 (529)
T 1jdh_A 373 IKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV 450 (529)
T ss_dssp HHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcCh--hhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc
Confidence 999999999999754 445788899999999999987777776655555444 43221
Q ss_pred hhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011328 402 EAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 453 (488)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~ 453 (488)
+ .+..+.+.|+++.|..+..+++++++..|...+.++..
T Consensus 451 ~-------------~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~ 489 (529)
T 1jdh_A 451 H-------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 489 (529)
T ss_dssp H-------------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred h-------------HHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence 1 35678889999999999999999999999999998864
No 23
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.1e-33 Score=285.36 Aligned_cols=403 Identities=16% Similarity=0.152 Sum_probs=345.7
Q ss_pred ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328 30 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 30 ~~i~~l~~~L~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
+.++.|++.|.++ +++++..|+.+|.++... .+....+.+.|+++.|+++|++++ +.++..|+++|.+++...+..
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~ 132 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 132 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence 6799999999864 899999999999986554 357788888999999999999998 999999999999999866778
Q ss_pred hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328 109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 188 (488)
+..+.+.|+++.|+++|+++++.++..++.+|.+++...++.+..+.+.|+++.|+.++.......++..++.+|.+++.
T Consensus 133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 212 (644)
T 2z6h_A 133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212 (644)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999987788888999999999999999666667888999999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011328 189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268 (488)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 268 (488)
...........++++.++.++.+.+..++..++++|.+++...+.. . ...++++.|+.++.++++.++..|+++|++
T Consensus 213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~-~--~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~ 289 (644)
T 2z6h_A 213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-E--GMEGLLGTLVQLLGSDDINVVTCAAGILSN 289 (644)
T ss_dssp CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC-C--SCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh-h--hhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 7655556666799999999999999999999999999999764332 1 112678999999999999999999999999
Q ss_pred hhcCCchhhHHHhhCCChHHHHHHhcccch-hhHHHHHHHHHHHHhcCCH---HHHHHHHHcCChHHHHHHHhcCC-hhH
Q 011328 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYK-KSIKKEACWTISNITAGNV---NQIQAIIEAGIIGPLVNLLLNAE-FEI 343 (488)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~---~~~~~l~~~~~l~~L~~ll~~~~-~~v 343 (488)
++..++..+..+.+.++++.|+.++.+..+ +.++..|+++|+|++..++ .....+.+.|+++.|+++|.+++ +.+
T Consensus 290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v 369 (644)
T 2z6h_A 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 369 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence 999877788888899999999999987523 7999999999999997433 23344778899999999999874 699
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC----------------------HHHHHHHHHHHHHHHHhh
Q 011328 344 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD----------------------PRIVTVCLEGLENILKAG 401 (488)
Q Consensus 344 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~----------------------~~v~~~al~~L~~l~~~~ 401 (488)
+..|+++|.|++... +....+.+.|+++.|++++.+.+ .+++..++.+|.++....
T Consensus 370 ~~~a~~~L~nLa~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~ 447 (644)
T 2z6h_A 370 IKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV 447 (644)
T ss_dssp HHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHccCH--HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH
Confidence 999999999999754 34478889999999999987633 456677788888777543
Q ss_pred hhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011328 402 EAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 453 (488)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~ 453 (488)
. .+..+.+.|+++.|.+++.+.+++++..|...+.++..
T Consensus 448 ~-------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~ 486 (644)
T 2z6h_A 448 H-------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 486 (644)
T ss_dssp H-------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred H-------------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 2 36778889999999999999999999999999888764
No 24
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=2.1e-32 Score=285.54 Aligned_cols=402 Identities=16% Similarity=0.158 Sum_probs=342.6
Q ss_pred ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328 30 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 30 ~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
+.++.|++.|++ +++.++..|+.+|.++... .+....+.+.|+++.|+++|++++ +.++..|+++|.+++...++.
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 679999999985 4899999999999996654 355777888999999999999998 999999999999999977788
Q ss_pred hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328 109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 188 (488)
+..+.+.|+++.|+.++.+++..++..++.+|.+++..+++.+..+.+.++++.|+.++........+..++.+|.+++.
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 348 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 88888999999999999999999999999999999988788888888999999999999666566677889999999997
Q ss_pred CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011328 189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268 (488)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 268 (488)
...........++++.|+.++.+.+..++..++++|.+++...... ....++++.|+.++.+.++.++..|+++|++
T Consensus 349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6555455556789999999999999999999999999999765432 1123678999999999999999999999999
Q ss_pred hhcCCchhhHHHhhCCChHHHHHHhcccch-hhHHHHHHHHHHHHhcCCHH---HHHHHHHcCChHHHHHHHhcCCh-hH
Q 011328 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYK-KSIKKEACWTISNITAGNVN---QIQAIIEAGIIGPLVNLLLNAEF-EI 343 (488)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~l~~L~~ll~~~~~-~v 343 (488)
++..++..+..+.+.++++.|+.+|.+..+ ..++..|+++|+|++..+++ ....+...++++.|++++.+++. .+
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v 505 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 505 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence 999888888888899999999999987423 38999999999999874333 34567788999999999998864 99
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC----------------------HHHHHHHHHHHHHHHHhh
Q 011328 344 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD----------------------PRIVTVCLEGLENILKAG 401 (488)
Q Consensus 344 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~----------------------~~v~~~al~~L~~l~~~~ 401 (488)
+..|+++|+|++.. ++....+.+.|+++.|++++.+.+ ++++..++.+|.++....
T Consensus 506 ~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~ 583 (780)
T 2z6g_A 506 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI 583 (780)
T ss_dssp HHHHHHHHHHHHSS--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh
Confidence 99999999999974 455678889999999999987543 346677888888876432
Q ss_pred hhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011328 402 EAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 452 (488)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~ 452 (488)
. .+..+.+.|+++.|..++.+++++++..|...+.++.
T Consensus 584 ~-------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 621 (780)
T 2z6g_A 584 H-------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 621 (780)
T ss_dssp H-------------HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred h-------------hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 1 3667888999999999999999999999999888775
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=1.5e-29 Score=237.13 Aligned_cols=269 Identities=19% Similarity=0.193 Sum_probs=234.1
Q ss_pred hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-----------CCHHHHHHHHHHHhhhhCCCchhHHHHHh
Q 011328 88 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-----------PTDDVREQAVWALGNVAGDSPKCRDLVLS 156 (488)
Q Consensus 88 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 156 (488)
...+..|+++|.+++. ++++|..+++.|+++.|+.+|.. .++.++..|+|+|.|++.+++..+..+..
T Consensus 46 ~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4566689999999999 68999999999999999999942 34789999999999999888766776654
Q ss_pred -cCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhh-ccCChhHHHHHHHHHHHhccCCc
Q 011328 157 -NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTN 232 (488)
Q Consensus 157 -~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~l~~ll-~~~~~~v~~~al~~L~~l~~~~~ 232 (488)
.|+++.|+.+| ++.++.++..++|+|.+|+... ..+......|++|.|+++| ++.+..+++.++.+|++++...+
T Consensus 125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 45699999999 7788999999999999999852 2344455679999999975 56789999999999999998554
Q ss_pred hhHHHHH-HhCCHHHHHHhcCCCCc----chHhHHHHHHhHhhc---CCchhhHHHhhCCChHHHHHHhcccchhhHHHH
Q 011328 233 DKIQAVI-EAGVCPRLVELLRHPSP----SVLIPALRTVGNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE 304 (488)
Q Consensus 233 ~~~~~~~-~~~~l~~L~~lL~~~~~----~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~ 304 (488)
+....+. ..|+++.|+.+|.++++ ++++.|+++|.+++. .++..++.+.+.|+++.|+.+|.++ +..+++.
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~ 282 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN 282 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence 4445565 68999999999988654 489999999999997 5778888899999999999999998 8899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCC
Q 011328 305 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 359 (488)
Q Consensus 305 a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 359 (488)
|+|+|+|++.++++.++.+.+.|+++.|++++.+++..+++.|+++|.|++....
T Consensus 283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 9999999998889999999999999999999999999999999999999998754
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=1.9e-28 Score=229.67 Aligned_cols=274 Identities=19% Similarity=0.183 Sum_probs=236.3
Q ss_pred CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc----------cccHhHHHHHHHHHHHhhcCCC-CCChh
Q 011328 128 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE----------HAKLSMLRNATWTLSNFCRGKP-QPLFE 196 (488)
Q Consensus 128 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~----------~~~~~v~~~a~~~L~~l~~~~~-~~~~~ 196 (488)
+.......|+++|.+++.+ +++|+.+.+.|++++|+.+|.. ..++.++..|+|+|.+++.+.+ .+...
T Consensus 44 ~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i 122 (354)
T 3nmw_A 44 PVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL 122 (354)
T ss_dssp GGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4456667899999999988 6789999999999999999942 2357799999999999998764 32223
Q ss_pred h-hhchHHHHHHhhccCChhHHHHHHHHHHHhccC-CchhHHHHHHhCCHHHHHHhc-CCCCcchHhHHHHHHhHhhcCC
Q 011328 197 Q-TRPALPALERLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGD 273 (488)
Q Consensus 197 ~-~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~-~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~ 273 (488)
. ..|++|.|+.+|++++++++..++++|.+++.. ++.....+.+.|+++.|+++| .+.++.+++.|+.+|++++..+
T Consensus 123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 202 (354)
T 3nmw_A 123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 202 (354)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence 2 456799999999999999999999999999975 455667788999999999975 6678899999999999999866
Q ss_pred chhhHHHh-hCCChHHHHHHhcccchh---hHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHH
Q 011328 274 DMQTQCII-NHQALPCLLDLLTQNYKK---SIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE 346 (488)
Q Consensus 274 ~~~~~~~~-~~~~~~~L~~lL~~~~~~---~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~ 346 (488)
+.....+. ..|+++.|+.+|.++.+. .+++.|+++|.|++. .+++.++.+.+.|+++.|+.+|.+++..+++.
T Consensus 203 ~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 282 (354)
T 3nmw_A 203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN 282 (354)
T ss_dssp HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHH
T ss_pred hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHH
Confidence 55555565 789999999999876222 599999999999997 67899999999999999999999999999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 011328 347 AAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA 403 (488)
Q Consensus 347 a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~ 403 (488)
|+++|.|++.. +++....+.+.|+++.|+++++++++++++.++++|.+++...+.
T Consensus 283 A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 283 ACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999864 578889999999999999999999999999999999999976543
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=2.7e-26 Score=207.82 Aligned_cols=244 Identities=27% Similarity=0.406 Sum_probs=223.7
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328 29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
++.++.|++.|++++++++..|+++|.+++... .+....+++.|+++.|+++|++++ ++++..|+++|.+++..+++.
T Consensus 1 ~~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~ 78 (252)
T 4hxt_A 1 MNDVEKLVKLLTSTDSETQKEAARDLAEIASGP-ASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEA 78 (252)
T ss_dssp CCHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHH
T ss_pred CCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHH
Confidence 367999999999999999999999999998765 467888889999999999999999 999999999999999977999
Q ss_pred hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328 109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 188 (488)
+..+.+.|+++.|+.++++++++++..++++|++++...+..+..+.+.|+++.+++++ ++.++.++..++++|.+++.
T Consensus 79 ~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 79 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIAS 157 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999988888889999999999999999 77889999999999999998
Q ss_pred CCCCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011328 189 GKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 267 (488)
Q Consensus 189 ~~~~~-~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~ 267 (488)
..+.. ......++++.++.++.++++.++..++++|.+++..++...+.+.+.|+++.|+.++.++++.++..|+++|+
T Consensus 158 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 237 (252)
T 4hxt_A 158 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALE 237 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 75322 44555899999999999999999999999999999888888888999999999999999999999999999999
Q ss_pred HhhcCCch
Q 011328 268 NIVTGDDM 275 (488)
Q Consensus 268 ~l~~~~~~ 275 (488)
+++...+.
T Consensus 238 ~l~~~~~~ 245 (252)
T 4hxt_A 238 NIKSGGWL 245 (252)
T ss_dssp HHHHTCBC
T ss_pred HHHcCCCc
Confidence 99986543
No 28
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=2.7e-26 Score=207.80 Aligned_cols=240 Identities=28% Similarity=0.433 Sum_probs=222.3
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011328 73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 152 (488)
Q Consensus 73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (488)
|.++.|+++|++++ ++++..|+++|.+++...++.+..+.+.|+++.|++++++++++++..++++|++++.+++..+.
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 57899999999999 99999999999999997888999999999999999999999999999999999999998888899
Q ss_pred HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011328 153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 231 (488)
Q Consensus 153 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 231 (488)
.+.+.|+++.++.++ +++++.++..++++|.+++... .........++++.++++++++++.++..++++|++++...
T Consensus 81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6788999999999999999654 33444555789999999999999999999999999999988
Q ss_pred chhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011328 232 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 311 (488)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n 311 (488)
+...+.+.+.|+++.|+.++.++++.++..|+++|++++..++.....+.+.|+++.++.+++++ ++.++..|+++|+|
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence 77778889999999999999999999999999999999998888888889999999999999998 89999999999999
Q ss_pred HhcC
Q 011328 312 ITAG 315 (488)
Q Consensus 312 l~~~ 315 (488)
++..
T Consensus 239 l~~~ 242 (252)
T 4hxt_A 239 IKSG 242 (252)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 9974
No 29
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=3e-26 Score=207.58 Aligned_cols=239 Identities=37% Similarity=0.575 Sum_probs=217.7
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
..++.+++.|++++++++..|++.|.++++.. .+....+++.|+++.|+++|++++ ++++..|+++|.+++.++++.+
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHH
Confidence 56788999999999999999999999988863 677888899999999999999999 9999999999999999889999
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
..+.+.|+++.|+.+++++++.++..|+++|++++.+.+.....+.+.|+++.++.++ ++.++.++..++++|.+++..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999988775447888999999999999 777899999999999999986
Q ss_pred CC-CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011328 190 KP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268 (488)
Q Consensus 190 ~~-~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 268 (488)
.+ ........++++.++.++.++++.++..++++|++++..+++....+.+.|+++.|+.++.++++.++..|+++|++
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 52 23334457999999999999999999999999999998888888888999999999999999999999999999999
Q ss_pred hhc
Q 011328 269 IVT 271 (488)
Q Consensus 269 l~~ 271 (488)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 975
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=2.3e-26 Score=208.33 Aligned_cols=239 Identities=35% Similarity=0.556 Sum_probs=220.0
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011328 73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 152 (488)
Q Consensus 73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (488)
..++.++++|++++ ++++..|+++|.++...+++.+..+++.|+++.|+++|+++++.++..|+++|++++.+++..+.
T Consensus 12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 56889999999999 89999999999887665778888999999999999999999999999999999999998888899
Q ss_pred HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011328 153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 231 (488)
Q Consensus 153 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 231 (488)
.+.+.|+++.++.++ +++++.++..++++|.+++.+.+.. ......++++.++++++++++.++..++++|++++...
T Consensus 91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6678999999999999999887544 55666899999999999999999999999999999888
Q ss_pred chhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011328 232 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 311 (488)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n 311 (488)
+.....+.+.|+++.|+.++.++++.++..|+++|++++..++.....+.+.|+++.++.++.++ ++.++..|+++|+|
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 77878888999999999999999999999999999999988888888889999999999999998 99999999999999
Q ss_pred Hhc
Q 011328 312 ITA 314 (488)
Q Consensus 312 l~~ 314 (488)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 974
No 31
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.93 E-value=2.3e-24 Score=196.57 Aligned_cols=236 Identities=16% Similarity=0.159 Sum_probs=197.5
Q ss_pred hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHH-hcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHH
Q 011328 214 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL 292 (488)
Q Consensus 214 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l 292 (488)
.+-+..|+..|.+++...+ ....+.+.|+++.|+. +|.++++.++..|+++|++++.+++..+..+++.|+++.|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 3567788999999988654 4566888899999999 9999999999999999999999999888899999999999999
Q ss_pred hcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCCh
Q 011328 293 LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCI 372 (488)
Q Consensus 293 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i 372 (488)
|+++.+..++..|+|+|+|++.+++...+.+.+.|+++.|+.++.+++..++..|+|+|.+++.. +++.+..+.+.|++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i 211 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV 211 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence 98643788999999999999998888888899999999999999999999999999999999976 56788999999999
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC-CHHHHHHHHHHHHHh
Q 011328 373 KPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-NTEIYEKAVKILETY 451 (488)
Q Consensus 373 ~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~-~~~v~~~a~~~l~~~ 451 (488)
+.|+.+|.+++++++..++.+|.+++...+....... ...+.+...+++ .+..++.++ +.++++++..++++|
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~-~~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~~~ 285 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR-EPELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLLQTC 285 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH-CGGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHh-ccHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999977443211000 011234555554 356667565 799999999999999
Q ss_pred cCCCCC
Q 011328 452 WVEEDE 457 (488)
Q Consensus 452 ~~~~~~ 457 (488)
|..+++
T Consensus 286 f~~~~~ 291 (296)
T 1xqr_A 286 FSSPAD 291 (296)
T ss_dssp CC----
T ss_pred cCCCCC
Confidence 976544
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.6e-23 Score=207.48 Aligned_cols=399 Identities=15% Similarity=0.135 Sum_probs=300.2
Q ss_pred ccHHHHHHHhcCCC-HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328 30 ESLPAMVAGVWSDD-RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 30 ~~i~~l~~~L~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
|..+.+.+.+.+.. ..+.. ++..+.+.++.+ +..+..+..+.++.|.+++++ +.+|..|+-+|..+.......
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~-a~L~lLsaACi~--~~cR~~I~~~~~~~L~~~l~~---~~ir~lAavvL~KL~~~~~~~ 328 (778)
T 3opb_A 255 GLSKLFKKRVFEEQDLQFTK-ELLRLLSSACID--ETMRTYITENYLQLLERSLNV---EDVQIYSALVLVKTWSFTKLT 328 (778)
T ss_dssp THHHHHHHHHHSSCCHHHHH-HHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHTTS---GGGHHHHHHHHHHHTGGGTCT
T ss_pred cHHHHHHHHHhcccchHHHH-HHHHHHHHHhCC--cHHHHHHHHhHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCCC
Confidence 55677777776544 44444 444444446654 455777778899999999965 588999999999988733221
Q ss_pred hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHh-cCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011328 109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFC 187 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~ 187 (488)
...+. ...+.+.++|.+++.+-+..|++.|+.++.+.. .++.+.+ .+++..|++++....+.++...++.+|.|++
T Consensus 329 ~~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~-VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt 405 (778)
T 3opb_A 329 CINLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLKAS-VKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLS 405 (778)
T ss_dssp TCCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSH-HHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTT
T ss_pred cCcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHH-HHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Confidence 11111 246777778887776679999999999987655 5555544 4569999999954577889999999999999
Q ss_pred cCCCCCC---------------------------------------hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 011328 188 RGKPQPL---------------------------------------FEQTRPALPALERLIHSNDDEVLTDACWALSYLS 228 (488)
Q Consensus 188 ~~~~~~~---------------------------------------~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~ 228 (488)
.+.+... .....|++|.|+.++.++++.++..++++|.+++
T Consensus 406 ~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS 485 (778)
T 3opb_A 406 TLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNIT 485 (778)
T ss_dssp CCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHH
T ss_pred CCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 8653210 1123789999999999999999999999999999
Q ss_pred cCCchhHHHHHHhCCHHHHHHhcCCCCcc---hHhHHHHHHhHhhcCCchhhHHHhh----CCChHHHHHHhcc-cchh-
Q 011328 229 DGTNDKIQAVIEAGVCPRLVELLRHPSPS---VLIPALRTVGNIVTGDDMQTQCIIN----HQALPCLLDLLTQ-NYKK- 299 (488)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~---v~~~a~~~L~~l~~~~~~~~~~~~~----~~~~~~L~~lL~~-~~~~- 299 (488)
... +.+..+++.|+++.|+.++.+..+. .+..|+.+|++++...+... ++. .++++.|+.+|.. +...
T Consensus 486 ~d~-~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~ 562 (778)
T 3opb_A 486 RSK-NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDD 562 (778)
T ss_dssp TSG-GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSS
T ss_pred CCH-HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCCCCCccc
Confidence 764 5557788999999999999886543 79999999999985443221 221 3889999999983 2111
Q ss_pred -----------hHHHHHHHHHHHHhcCC----HHHHHHHHHc-CChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHH
Q 011328 300 -----------SIKKEACWTISNITAGN----VNQIQAIIEA-GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 363 (488)
Q Consensus 300 -----------~v~~~a~~~L~nl~~~~----~~~~~~l~~~-~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 363 (488)
.-+.+|+.+|.|++..+ .+.++.++.. |+++.|..++.+++..+|+.|+++++|++... +.+
T Consensus 563 ~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~--e~i 640 (778)
T 3opb_A 563 NPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP--LTI 640 (778)
T ss_dssp CC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG--GGT
T ss_pred ccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc--HHH
Confidence 12779999999999964 3456778884 89999999999999999999999999999743 332
Q ss_pred -HHHHHC------CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC-
Q 011328 364 -KFLVSQ------GCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH- 435 (488)
Q Consensus 364 -~~l~~~------~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~- 435 (488)
..+... +.++.|+.+++.++.+++..|.++|.++....+.. ....++..++++.+..+..+
T Consensus 641 ~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i-----------a~~ll~~~~gi~~Ll~lL~~~ 709 (778)
T 3opb_A 641 AAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI-----------AKELLTKKELIENAIQVFADQ 709 (778)
T ss_dssp GGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH-----------HHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH-----------HHHHHHccccHHHHHHHHhcc
Confidence 222211 23778999999999999999999999996544432 14445555899999999877
Q ss_pred -CCHHHHHHHHHHHHHhcC
Q 011328 436 -DNTEIYEKAVKILETYWV 453 (488)
Q Consensus 436 -~~~~v~~~a~~~l~~~~~ 453 (488)
++++++.++..++.++++
T Consensus 710 ~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 710 IDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp TTCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 899999999999999997
No 33
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.1e-23 Score=208.21 Aligned_cols=322 Identities=10% Similarity=0.105 Sum_probs=257.1
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHH-HcCCHHHHHHhhcC-CCChhHHHHHHHHHHHhcCCCch
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSR-DDFPQLQFEAAWALTNIASGTSE 107 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~i~~L~~lL~~-~~~~~v~~~a~~~L~~l~~~~~~ 107 (488)
+..+.+.+.|.+++.+.+..|+..|..+... .+....+. +.++++.|++++++ .+ ..+.+.++.+|.|++...+.
T Consensus 334 ~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~--~~VKe~L~~d~~~L~~Lv~llk~~~d-~s~~Ygal~IL~NLt~~~~~ 410 (778)
T 3opb_A 334 QLSEIFINAISRRIVPKVEMSVEALAYLSLK--ASVKIMIRSNESFTEILLTMIKSQKM-THCLYGLLVIMANLSTLPEE 410 (778)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS--SHHHHHHHHCHHHHHHHHHHHTTTCC-TTHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhCC--HHHHHHHHhCHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCCcc
Confidence 3566788888887777799999999996443 45555555 45779999999996 55 78999999999999974331
Q ss_pred --------------------------------------hhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch
Q 011328 108 --------------------------------------NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 149 (488)
Q Consensus 108 --------------------------------------~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~ 149 (488)
.+..+.+.|+++.|+.++.++++.+++.++++|.+++.+ +.
T Consensus 411 ~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~ 489 (778)
T 3opb_A 411 XXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KN 489 (778)
T ss_dssp CCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GG
T ss_pred cchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HH
Confidence 356678999999999999999999999999999999977 66
Q ss_pred hHHHHHhcCChHHHHHHhcccccH--hHHHHHHHHHHHhhcCCCCCChh---hhhchHHHHHHhhcc-CCh---------
Q 011328 150 CRDLVLSNGALMPLLAQFNEHAKL--SMLRNATWTLSNFCRGKPQPLFE---QTRPALPALERLIHS-NDD--------- 214 (488)
Q Consensus 150 ~~~~~~~~~~l~~L~~ll~~~~~~--~v~~~a~~~L~~l~~~~~~~~~~---~~~~~~~~l~~ll~~-~~~--------- 214 (488)
.|..+.+.|+++.|+.++...++. ..+..|+.+|.+++......... ...++++.|+.+|.. +..
T Consensus 490 ~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~ 569 (778)
T 3opb_A 490 FIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDE 569 (778)
T ss_dssp GHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CC
T ss_pred HHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccc
Confidence 899999999999999999554433 27899999999998543211110 113899999999983 221
Q ss_pred ----hHHHHHHHHHHHhccCCc----hhHHHHHHh-CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCC-
Q 011328 215 ----EVLTDACWALSYLSDGTN----DKIQAVIEA-GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ- 284 (488)
Q Consensus 215 ----~v~~~al~~L~~l~~~~~----~~~~~~~~~-~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~- 284 (488)
.-+..|+.+|.|++..++ +....+++. |+++.|..+|.++++.+++.|+++++|++.......+.+...+
T Consensus 570 ~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~ 649 (778)
T 3opb_A 570 QIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLEN 649 (778)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSS
T ss_pred cccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcC
Confidence 127789999999998763 334667774 8999999999999999999999999999984432223443322
Q ss_pred -----ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHc-CChHHHHHHHhc--CChhHHHHHHHHHHHhcc
Q 011328 285 -----ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA-GIIGPLVNLLLN--AEFEIKKEAAWAISNATS 356 (488)
Q Consensus 285 -----~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~l~~L~~ll~~--~~~~v~~~a~~aL~~l~~ 356 (488)
.++.|+.+++++ +.++|+.|+|+|+|++..++...+.+++. ++++.++.++.+ ++++++..++.++.||+.
T Consensus 650 ~~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 650 PQSLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred chhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 377899999888 99999999999999987778888888876 799999999999 899999999999999996
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.90 E-value=3.6e-22 Score=175.32 Aligned_cols=199 Identities=38% Similarity=0.586 Sum_probs=184.9
Q ss_pred hhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhh
Q 011328 198 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT 277 (488)
Q Consensus 198 ~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 277 (488)
..+..+.+..+++++++.++..++++|.+++..+++....+.+.|+++.|+.+|.++++.++..|+++|++++.+++...
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 35788899999999999999999999999998887888889999999999999999999999999999999998888888
Q ss_pred HHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccC
Q 011328 278 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 357 (488)
Q Consensus 278 ~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 357 (488)
..+.+.|+++.++.+|+++ ++.++..|+++|+|++.++++....+.+.|+++.|++++.++++.++..|+++|.+++..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 8899999999999999999 999999999999999998888888999999999999999999999999999999999985
Q ss_pred CCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 011328 358 GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL 398 (488)
Q Consensus 358 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~ 398 (488)
+++....+.+.|+++.|.+++++++++++..++++|.++.
T Consensus 169 -~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 169 -GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp -CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred -CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 4677888899999999999999999999999999999875
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.90 E-value=2.7e-22 Score=176.05 Aligned_cols=199 Identities=34% Similarity=0.523 Sum_probs=181.3
Q ss_pred HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchh
Q 011328 71 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150 (488)
Q Consensus 71 ~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (488)
..+..+.|+.+|++++ ++++..|+++|.+++..+++.+..+.+.|+++.|+++|+++++.++..|+++|++++.+++..
T Consensus 10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 4688999999999999 999999999999999878999999999999999999999999999999999999999888888
Q ss_pred HHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCC-CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 011328 151 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 229 (488)
Q Consensus 151 ~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~ 229 (488)
+..+.+.|+++.++.++ ++.++.++..++++|.+++...+ ........++++.+++++++++..++..++++|.+++.
T Consensus 89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 89999999999999999 77789999999999999997653 22344567899999999999999999999999999999
Q ss_pred CCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011328 230 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 271 (488)
Q Consensus 230 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 271 (488)
.+++....+.+.|+++.|+.++.++++.++..|+++|.+++.
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 877777888899999999999999999999999999999975
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.88 E-value=3.6e-21 Score=175.48 Aligned_cols=226 Identities=17% Similarity=0.144 Sum_probs=185.2
Q ss_pred hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHH-hhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHH
Q 011328 88 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ 166 (488)
Q Consensus 88 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 166 (488)
.+-+..|+..|.+++. +.++...+.+.|+++.|+. +|.++++.++..|+|+|++++.+++.+++.+++.|++++|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 4678899999999999 6778888999999999999 9999999999999999999999999999999999999999999
Q ss_pred hcccccHhHHHHHHHHHHHhhcCCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHH
Q 011328 167 FNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 245 (488)
Q Consensus 167 l~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~ 245 (488)
|..+++..+++.|+|+|++++.+.+. .......++++.|+.++++++..++..++|+|++++..+++..+.+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 95455789999999999999987633 33444578999999999999999999999999999988888888999999999
Q ss_pred HHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhh--CCC---hHHHHHHhcccc-hhhHHHHHHHHHHHHhc
Q 011328 246 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN--HQA---LPCLLDLLTQNY-KKSIKKEACWTISNITA 314 (488)
Q Consensus 246 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~---~~~L~~lL~~~~-~~~v~~~a~~~L~nl~~ 314 (488)
.|+.+|.++++.++..++.+|++++...+......-. ..+ ++.-.+-+++.+ ..++...+..++.++..
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999875443332221 111 111223333221 34555666666666653
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.83 E-value=3.2e-20 Score=161.63 Aligned_cols=197 Identities=19% Similarity=0.152 Sum_probs=169.9
Q ss_pred CHHHHHHhhcCCCCh--hHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhH
Q 011328 74 VVPRFIEFLSRDDFP--QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151 (488)
Q Consensus 74 ~i~~L~~lL~~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (488)
.++.++++|++++ + +++..|++++.+++..+++.+..+.+.|+||.|+++|+++++++++.|+++|.||+.++++.+
T Consensus 9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 5899999999988 6 889999999999998789999999999999999999999999999999999999999888889
Q ss_pred HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc----------------cCChh
Q 011328 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----------------SNDDE 215 (488)
Q Consensus 152 ~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~----------------~~~~~ 215 (488)
..+.+.|++++|+++|..+.+..+++.++.+|++|+.....+.. ...+++|.|+.++. ..+..
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~-i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNL-MITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHH-HHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHH-HHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999995457889999999999999987544333 33567888887653 12668
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHhcCC------CCcchHhHHHHHHhHhhcC
Q 011328 216 VLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTG 272 (488)
Q Consensus 216 v~~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~a~~~L~~l~~~ 272 (488)
++..+..+|.|++..+++..+.+.+. |+++.|+.+++. .+...++.|+.+|.||++.
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999998776666777765 678999999864 2567889999999999874
No 38
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.82 E-value=5.9e-20 Score=159.97 Aligned_cols=197 Identities=18% Similarity=0.180 Sum_probs=166.6
Q ss_pred ccHHHHHHHhcCCCH--HHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch
Q 011328 30 ESLPAMVAGVWSDDR--NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 107 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 107 (488)
-.+|.+++.|+++++ +++..|++.+.+++... .+....+++.|++|.|+++|++++ +++|..|+++|.+++.++++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHH
Confidence 358899999999888 89999999999987654 567888889999999999999988 99999999999999998899
Q ss_pred hhHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc---------------ccc
Q 011328 108 NTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---------------EHA 171 (488)
Q Consensus 108 ~~~~~~~~g~i~~L~~~L~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~---------------~~~ 171 (488)
++..+.+.|+++.|+++|+ +++.++++.++.+|++|+.... .+..+.+ +++++|+.++. ...
T Consensus 86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~ 163 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLL 163 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHh-ccHHHHHHHHhccccCCcccccccccccc
Confidence 9999999999999999998 5799999999999999997654 5666665 46888887652 013
Q ss_pred cHhHHHHHHHHHHHhhcCC-CCCChhhh-hchHHHHHHhhcc------CChhHHHHHHHHHHHhccC
Q 011328 172 KLSMLRNATWTLSNFCRGK-PQPLFEQT-RPALPALERLIHS------NDDEVLTDACWALSYLSDG 230 (488)
Q Consensus 172 ~~~v~~~a~~~L~~l~~~~-~~~~~~~~-~~~~~~l~~ll~~------~~~~v~~~al~~L~~l~~~ 230 (488)
++.++.++..+|.||+... .....+.. .|+++.|+.+++. .+.+.++.++.+|.||+..
T Consensus 164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 6789999999999999865 44444433 5789999999974 2678999999999999864
No 39
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.81 E-value=2.6e-18 Score=175.14 Aligned_cols=383 Identities=11% Similarity=0.117 Sum_probs=286.2
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
..+|.+.+.+.++++.+|..|+..|..++..... ......++|.+..++++++ +.+|..|+.++..++...+..
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~- 237 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL----DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE- 237 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH----HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH-
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH----HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH-
Confidence 4567777888889999999999999998765421 1234578899999999988 899999999999988633221
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
.....+++.+..+++++++.+|..++.+|+.++..... .......++.++.++ +++++.++..+++++..++..
T Consensus 238 --~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~ 311 (588)
T 1b3u_A 238 --DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCEN 311 (588)
T ss_dssp --HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHH
Confidence 12234688888899999999999999999999753211 122334677888888 678899999999999999886
Q ss_pred CCCCCh--hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011328 190 KPQPLF--EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 267 (488)
Q Consensus 190 ~~~~~~--~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~ 267 (488)
.+.... .....++|.+..+++++++.++..+++++..++..-... .....+++.+..+++++++.+|..++.+++
T Consensus 312 ~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~ 388 (588)
T 1b3u_A 312 LSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLD 388 (588)
T ss_dssp SCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCH
T ss_pred hChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 533221 345678899999999999999999999999987543221 122357888999999988999999999988
Q ss_pred HhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHH
Q 011328 268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE 346 (488)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~ 346 (488)
.+....... .....+++.+..++.++ ++.+|..++.++..++.. ..+ .....+++.+...+.+++..||..
T Consensus 389 ~l~~~~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~ 460 (588)
T 1b3u_A 389 CVNEVIGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREA 460 (588)
T ss_dssp HHHHHSCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHH
T ss_pred HHHHhcCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHH
Confidence 887643211 11235678888888887 899999999999988752 111 111236788888888889999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccH
Q 011328 347 AAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGL 426 (488)
Q Consensus 347 a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 426 (488)
|+.+++.++...+++.. ...+++.|..+++++++.++..++.++..+....... . + ....+
T Consensus 461 a~~~l~~l~~~~~~~~~----~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~-------------~-~-~~~~~ 521 (588)
T 1b3u_A 461 ATSNLKKLVEKFGKEWA----HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD-------------I-T-TKHML 521 (588)
T ss_dssp HHHHHHHHHHHHCHHHH----HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH-------------H-H-HHHTH
T ss_pred HHHHHHHHHHHhCchhH----HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH-------------H-H-HHHHH
Confidence 99999999865443321 2357888888888889999999999999887653321 1 1 12346
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011328 427 EKIENLQSHDNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 427 ~~L~~l~~~~~~~v~~~a~~~l~~~~~~ 454 (488)
+.+..+..+++++|+..+.+.+..++..
T Consensus 522 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 522 PTVLRMAGDPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHhhCCCCCchHHHHHHHHHHHHHHH
Confidence 7777888888889998888888887753
No 40
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.80 E-value=3.2e-18 Score=174.45 Aligned_cols=382 Identities=12% Similarity=0.141 Sum_probs=285.6
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
..+|.+...++++++.+|..|+.+|..++...+. ......++|.+.+++++++ ..+|..++.+++.++.....
T Consensus 203 ~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~-- 275 (588)
T 1b3u_A 203 EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP-- 275 (588)
T ss_dssp THHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH--
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc--
Confidence 4577888888899999999999999998765421 1233458889999998888 89999999999999862111
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch-hHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK-CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 188 (488)
......+++.+..+++++++.+|..++++|+.++...+. .+........++.+..++ ++.++.++..++++|..++.
T Consensus 276 -~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~ 353 (588)
T 1b3u_A 276 -EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSP 353 (588)
T ss_dssp -HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHH
T ss_pred -ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence 122335689999999999999999999999999864332 111122234566777777 77889999999999999875
Q ss_pred CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011328 189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268 (488)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 268 (488)
.... ......++|.+..+++++++.++..++.++..+....... .....+++.+..++.+.++.+|..++.+++.
T Consensus 354 ~~~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~ 428 (588)
T 1b3u_A 354 ILGK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 428 (588)
T ss_dssp HHCH--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HhhH--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 4211 1223567889999999999999999999998887543211 1223577888888998999999999999999
Q ss_pred hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHHH
Q 011328 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA 347 (488)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a 347 (488)
++...... .....+++.+...+.++ +..+|..|+.+++.++.. .++ .....++|.+..++.++++.+|..+
T Consensus 429 l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~----~~~~~llp~l~~~~~~~~~~~R~~a 500 (588)
T 1b3u_A 429 LAGQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTT 500 (588)
T ss_dssp HHHHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH----HHHHHTHHHHHHTTTCSCHHHHHHH
T ss_pred HHHHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 87532211 12234678888899888 899999999999999873 222 1223588888888888899999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHH
Q 011328 348 AWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLE 427 (488)
Q Consensus 348 ~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 427 (488)
+++++.++...+.+ .....+++.|.+.++++++.++..+++++..+....... + + ....++
T Consensus 501 ~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-----------~---~-~~~~~p 561 (588)
T 1b3u_A 501 LFCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS-----------T---L-QSEVKP 561 (588)
T ss_dssp HHHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH-----------H---H-HHHHHH
T ss_pred HHHHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh-----------h---h-HHHHHH
Confidence 99999998643222 122358999999999999999999999999998653211 1 1 133456
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhc
Q 011328 428 KIENLQSHDNTEIYEKAVKILETYW 452 (488)
Q Consensus 428 ~L~~l~~~~~~~v~~~a~~~l~~~~ 452 (488)
.|..+.++++++|+..|...+..+-
T Consensus 562 ~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 562 ILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhh
Confidence 7788889999999999999998764
No 41
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.79 E-value=3.3e-18 Score=181.77 Aligned_cols=355 Identities=13% Similarity=0.148 Sum_probs=260.1
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
..-+.+++.|.++++.+|..++.++..++..+.... ..+.++.|++.+.+++ +.++..++.+|+.++...++..
T Consensus 90 ~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~-----wp~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~ 163 (852)
T 4fdd_A 90 FIKSECLNNIGDSSPLIRATVGILITTIASKGELQN-----WPDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEIL 163 (852)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTT-----CTTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccc-----cHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHh
Confidence 344568888888999999999999999987652211 2468899999999988 8999999999999987433321
Q ss_pred HHHH----hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHH
Q 011328 110 RVVI----DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 185 (488)
Q Consensus 110 ~~~~----~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~ 185 (488)
..-. -..+++.+++.+.++++.+|..|++++..+....+..... .-...++.++..+ .++++.++..++++|..
T Consensus 164 ~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~-~~~~~l~~l~~~~-~d~~~~vr~~a~~~L~~ 241 (852)
T 4fdd_A 164 DSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML-HIDSFIENLFALA-GDEEPEVRKNVCRALVM 241 (852)
T ss_dssp HHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHT-SHHHHHHHHHHHH-TCCCHHHHHHHHHHHHH
T ss_pred chhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHH
Confidence 1100 1235677778888899999999999999988654421100 0113566677766 67788999999999999
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHh---CCHHHHHHhc-----------
Q 011328 186 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELL----------- 251 (488)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL----------- 251 (488)
++...+..-.....++++.+...+.+.++.++..++.++..++..... ...... .+++.++..+
T Consensus 242 l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~--~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~ 319 (852)
T 4fdd_A 242 LLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC--KDVLVRHLPKLIPVLVNGMKYSDIDIILLK 319 (852)
T ss_dssp HHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH--HHHHTTTHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHHcCCcHhHHHHhc
Confidence 998654332334567888899999999999999999999999865421 112221 4456666666
Q ss_pred CC-----------CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHH
Q 011328 252 RH-----------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 320 (488)
Q Consensus 252 ~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 320 (488)
.+ .+..+|..|..++..++...+.. ++. .+++.+...+.++ ++.+|..|++++++++.+..+..
T Consensus 320 ~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~~-~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~ 394 (852)
T 4fdd_A 320 GDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LLP-HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGM 394 (852)
T ss_dssp C------------CCCCHHHHHHHHHHHHHHHHGGG---GHH-HHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHH
T ss_pred CCcccccccccccccchHHHHHHHHHHHHHHhccHH---HHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHH
Confidence 23 23467889999999998754322 222 4678888888888 89999999999999999766654
Q ss_pred HHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHH-HHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 011328 321 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE-QIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 399 (488)
Q Consensus 321 ~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~ 399 (488)
.... .++++.++..+.++++.||..|++++++++...... ...++ .++++.|.+.++++++.++..++++|.+++.
T Consensus 395 ~~~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 395 IPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL--KPLMTELLKRILDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 4433 358999999999999999999999999998532110 00111 1467888888888899999999999999987
Q ss_pred hhh
Q 011328 400 AGE 402 (488)
Q Consensus 400 ~~~ 402 (488)
...
T Consensus 472 ~~~ 474 (852)
T 4fdd_A 472 EAC 474 (852)
T ss_dssp HHG
T ss_pred Hhh
Confidence 654
No 42
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.78 E-value=9e-16 Score=149.46 Aligned_cols=429 Identities=14% Similarity=0.138 Sum_probs=304.7
Q ss_pred hhcCCCCChhhHHHHhhhccHHHHHHHhcC--CCHHHHHHHHHHHHHHhccCCCc----------------cHHHHH-Hc
Q 011328 12 FSLLKPMDPMFFIIQLQLESLPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSP----------------PINEVI-QS 72 (488)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~i~~l~~~L~s--~~~~~~~~a~~~L~~l~~~~~~~----------------~~~~~~-~~ 72 (488)
.++.+.....+-. ++++.++..|+. +|.++...++..|.++.+....+ ..+.++ +.
T Consensus 47 k~~sk~y~~~Vg~-----~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~ 121 (651)
T 3grl_A 47 KSLSKKYRLEVGI-----QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQ 121 (651)
T ss_dssp HHTTTTTTTHHHH-----HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHST
T ss_pred HHHHHHhHHHhhh-----hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCC
Confidence 3455666666666 889999999985 57888888999999887754221 112333 56
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch-hhHHHH-hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchh
Q 011328 73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE-NTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150 (488)
Q Consensus 73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~-~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (488)
+.++.|+.+|++.+ ..+|..++.+|..++...++ .++.+. ..++++.|+.+|++..+.+|..++..|..++.++++.
T Consensus 122 ~~i~~Ll~lL~~~d-f~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~i 200 (651)
T 3grl_A 122 ENVTLLLSLLEEFD-FHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAI 200 (651)
T ss_dssp HHHHHHHHHTTCCC-HHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHhcCcc-HHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHH
Confidence 88999999999998 89999999999999987776 677777 4499999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHhcccc---cHhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccCCh------hHHH--
Q 011328 151 RDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDD------EVLT-- 218 (488)
Q Consensus 151 ~~~~~~~~~l~~L~~ll~~~~---~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~~~------~v~~-- 218 (488)
++.+.-.|+++.|+.++.... ...+...++.++.+|.+.+ .+.......++++.+..++..++. ....
T Consensus 201 QklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~ 280 (651)
T 3grl_A 201 QKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNL 280 (651)
T ss_dssp HHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHH
Confidence 999999999999999995332 2367889999999999987 355666668999999999975432 1223
Q ss_pred -HHHHHHHHhccCCc------hhHHHHHHhCCHHHHHHhcCCC--CcchHhHHHHHHhHhhcCCchhhHHHhhCC-----
Q 011328 219 -DACWALSYLSDGTN------DKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQ----- 284 (488)
Q Consensus 219 -~al~~L~~l~~~~~------~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~----- 284 (488)
.++.++.-++..+. .....+.+.|+++.+++++... ...++..|+.+++.+.++++.....+.+..
T Consensus 281 ~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~ 360 (651)
T 3grl_A 281 HLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNP 360 (651)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSS
T ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCC
Confidence 36666776665422 3345678889999999998765 467889999999999998887666554322
Q ss_pred ----ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHc----------CC---hHHHHHHHhcCChhHHHHH
Q 011328 285 ----ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA----------GI---IGPLVNLLLNAEFEIKKEA 347 (488)
Q Consensus 285 ----~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~----------~~---l~~L~~ll~~~~~~v~~~a 347 (488)
++..++.++.+.....+|.+|+.++..+..++++....+... +. -..+..-+.+.|+--.-.|
T Consensus 361 ~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfA 440 (651)
T 3grl_A 361 PRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCA 440 (651)
T ss_dssp CEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHH
T ss_pred CcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHH
Confidence 344455556666578899999999999999887766555542 01 1134455555666555668
Q ss_pred HHHHHHhccCCCHHHHHHHHH--------CCC---hHHHHhhcCC-CCHHHHHHHHHHHHHHHHhhhhhhccCCCCccch
Q 011328 348 AWAISNATSGGSNEQIKFLVS--------QGC---IKPLCDLLNC-PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNL 415 (488)
Q Consensus 348 ~~aL~~l~~~~~~~~~~~l~~--------~~~---i~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~ 415 (488)
+.+|.++... +++.+..+.. ... +..+...+.. .++.++..-+..|..-+.-++..
T Consensus 441 avil~hll~~-n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~A----------- 508 (651)
T 3grl_A 441 AVALAHALQE-NATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIA----------- 508 (651)
T ss_dssp HHHHHHHHTT-CHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHH-----------
T ss_pred HHHHHHHHcC-CHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChHH-----------
Confidence 8888888875 3455444433 111 3344555543 34554443333333322222221
Q ss_pred HHHHHHhhccHHHHHHhhcC--C--CHHHHHHHHHHHHHhcCCCCCC
Q 011328 416 FAQAIDDAEGLEKIENLQSH--D--NTEIYEKAVKILETYWVEEDED 458 (488)
Q Consensus 416 ~~~~l~~~g~~~~L~~l~~~--~--~~~v~~~a~~~l~~~~~~~~~~ 458 (488)
..+.+.+...++.|.+...+ . +.-|+-.+.-+|.-+|+..+++
T Consensus 509 V~dFL~~~s~l~~L~~~i~~~~~~~~~lvqGL~a~LLGi~yef~~~~ 555 (651)
T 3grl_A 509 VTHFLHNSANVPFLTGQIAENLGEEEQLVQGLCALLLGISIYFNDNS 555 (651)
T ss_dssp HHHHHHSTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHHcCCchHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccCCC
Confidence 46666666668888876533 2 2347889999998888776654
No 43
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.78 E-value=5.4e-18 Score=180.14 Aligned_cols=387 Identities=15% Similarity=0.151 Sum_probs=274.0
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHH
Q 011328 40 WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVP 119 (488)
Q Consensus 40 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 119 (488)
.+.++.+|..|+..|.+.+... ......-....+-+.+++.|.+++ +.+|..++.+++.++...... .-.+.++
T Consensus 58 ~~~~~~vR~~a~~~Lkn~i~~~-w~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~----~wp~ll~ 131 (852)
T 4fdd_A 58 KSEDEPTRSLSGLILKNNVKAH-FQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQ----NWPDLLP 131 (852)
T ss_dssp TTSCHHHHHHHHHHHHHHTTTS-GGGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTT----TCTTHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCcc----ccHHHHH
Confidence 4678899999999999987643 222222223345567778888887 899999999999998733110 1135789
Q ss_pred HHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHH----hcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCCh
Q 011328 120 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL----SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 195 (488)
Q Consensus 120 ~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~----~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 195 (488)
.|+..+.++++.+++.++.+|+.++.+.+.....-. -...++.+++.+ .++++.++..|++++..+....+....
T Consensus 132 ~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~~~~~~~~~~~ 210 (852)
T 4fdd_A 132 KLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQFIISRTQALM 210 (852)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcccHHHH
Confidence 999999999999999999999999865433211000 012355556666 577889999999999988765432222
Q ss_pred hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch
Q 011328 196 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 275 (488)
Q Consensus 196 ~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 275 (488)
.....+++.+..++.++++.++..+++++..++...++.....++ ++++.+...+.+.++.++..|+.++..++....
T Consensus 211 ~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~- 288 (852)
T 4fdd_A 211 LHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQPI- 288 (852)
T ss_dssp TSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT-
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh-
Confidence 234578888999999999999999999999999766544333333 577888888898899999999999999886431
Q ss_pred hhHHHhhC---CChHHHHHHh-----------cc--c--------chhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Q 011328 276 QTQCIINH---QALPCLLDLL-----------TQ--N--------YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP 331 (488)
Q Consensus 276 ~~~~~~~~---~~~~~L~~lL-----------~~--~--------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~ 331 (488)
. ...+.. .+++.++..+ .+ . .+..+|+.|..++..++...++ .++. .+++.
T Consensus 289 ~-~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~-~l~~~ 363 (852)
T 4fdd_A 289 C-KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLP-HILPL 363 (852)
T ss_dssp H-HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGHH-HHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHHH-HHHHH
Confidence 1 112221 3456666665 22 0 1345789999999998863222 1122 36778
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCC
Q 011328 332 LVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTG 411 (488)
Q Consensus 332 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~ 411 (488)
+...+.++++.+|..|+++|++++..........+ .++++.+...++++++.++..+++++.++.........
T Consensus 364 l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l--~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~----- 436 (852)
T 4fdd_A 364 LKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL--PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP----- 436 (852)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCT-----
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchH-----
Confidence 88888888999999999999999986643222222 25789999999999999999999999999875432110
Q ss_pred ccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011328 412 GVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 412 ~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~ 454 (488)
...+ .+.++.|...+.+++++++..|.+.+.++.+.
T Consensus 437 -----~~~~--~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 437 -----DTYL--KPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp -----TTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred -----HHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 1111 12356677777788999999999999888754
No 44
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.76 E-value=2.1e-15 Score=152.90 Aligned_cols=376 Identities=15% Similarity=0.178 Sum_probs=263.5
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
..++.+++++++++..++..+..++..++... ++. . .-+++.+.+-|++++ +.+|..|+++++++. .++..
T Consensus 49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~e~---~--~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~--~~~~~ 119 (591)
T 2vgl_B 49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-PDM---A--IMAVNSFVKDCEDPN-PLIRALAVRTMGCIR--VDKIT 119 (591)
T ss_dssp GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-HHH---H--HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCC--SGGGH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-chH---H--HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCC--hHHHH
Confidence 44567888888999999888888888766532 111 1 235678888899988 999999999999986 35544
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
..+ ++.+.+++.++++.+|..|+.++..++...++. +.+.+.++.+..+| .+.++.++..|+.+|..++..
T Consensus 120 ~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 120 EYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISES 190 (591)
T ss_dssp HHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTS
T ss_pred HHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhh
Confidence 433 578999999999999999999999998766542 22235677888888 788999999999999999987
Q ss_pred CCCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011328 190 KPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268 (488)
Q Consensus 190 ~~~~-~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 268 (488)
.+.. ......+.++.++..+.+.++..+...+.++..++..++.... .+++.+..++++.++.++..|++++..
T Consensus 191 ~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~ 265 (591)
T 2vgl_B 191 HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMK 265 (591)
T ss_dssp CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 6433 2334456778888888888999999999999988865543322 567888888999999999999999999
Q ss_pred hhcC---CchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHH------------------HHH----HH
Q 011328 269 IVTG---DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN------------------QIQ----AI 323 (488)
Q Consensus 269 l~~~---~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~------------------~~~----~l 323 (488)
+... +++..+.+. ..+.+.++.++. + ++.+|..|+.++..+....++ .+. .+
T Consensus 266 l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L 342 (591)
T 2vgl_B 266 FLELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIM 342 (591)
T ss_dssp SCCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHH
T ss_pred HhhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHH
Confidence 8742 233333222 244566665554 4 677888888888777641111 011 11
Q ss_pred H---Hc----CChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHH
Q 011328 324 I---EA----GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN 396 (488)
Q Consensus 324 ~---~~----~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~ 396 (488)
. +. .+++.|..++.+.+.+++..++++++.++.... .... .+++.|.+++......++..++.++..
T Consensus 343 ~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~-~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~ 416 (591)
T 2vgl_B 343 IRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVE-QSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRD 416 (591)
T ss_dssp HHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCH-HHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCh-hHHH-----HHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 1 11 245566667777788999999999999987652 2222 357888888888888888888888888
Q ss_pred HHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhh-cCCCHHHHHHHHHHHHHhcCC
Q 011328 397 ILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 397 l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~-~~~~~~v~~~a~~~l~~~~~~ 454 (488)
++...+... ..++..|.+.. ....++++..+.+++.+|-+.
T Consensus 417 ii~~~p~~~-----------------~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~ 458 (591)
T 2vgl_B 417 IFRKYPNKY-----------------ESIIATLCENLDSLDEPDARAAMIWIVGEYAER 458 (591)
T ss_dssp HHHHSCSSC-----------------CTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTT
T ss_pred HHHHCcchH-----------------HHHHHHHHHHHHhccCHHHHHHHHHHHHccccc
Confidence 876544221 12233343333 234566667777777766443
No 45
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.71 E-value=8.1e-16 Score=155.86 Aligned_cols=301 Identities=17% Similarity=0.150 Sum_probs=210.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011328 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
.++.+.+.|+++++.+|..|++++.++.. .+... .+++.+.+++.+++ +.+|..|+.++.++...+++...
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~~-----~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~~ 157 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIRV---DKITE-----YLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMVE 157 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGHH-----HHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCh---HHHHH-----HHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhcc
Confidence 45677778889999999999998888642 23222 34678899999988 99999999999999886665432
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC
Q 011328 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 190 (488)
Q Consensus 111 ~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~ 190 (488)
+.++++.+..+|.++++.++..|+.+|..++...+.........+.+..+++.+ .+.++-.+...+.++..++...
T Consensus 158 ---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~~ 233 (591)
T 2vgl_B 158 ---DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPKD 233 (591)
T ss_dssp ---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCCS
T ss_pred ---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCCC
Confidence 246789999999999999999999999999987653210001112356677776 5567777888888887776332
Q ss_pred CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC---CchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011328 191 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 267 (488)
Q Consensus 191 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~ 267 (488)
......+++.+..++++.++.|+..|++++..+... +++..+.+. ..+.+.|+.++. +++.+|..|+.+++
T Consensus 234 ----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~ 307 (591)
T 2vgl_B 234 ----DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNIN 307 (591)
T ss_dssp ----HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHH
Confidence 233467888888889999999999999999998742 233333333 245566666554 67788888888888
Q ss_pred HhhcCCchhh------------------HHHh-------hC----CChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHH
Q 011328 268 NIVTGDDMQT------------------QCII-------NH----QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 318 (488)
Q Consensus 268 ~l~~~~~~~~------------------~~~~-------~~----~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 318 (488)
.++...+... ...+ +. .+++.|...+.+. +.++|..+++++++++...+.
T Consensus 308 ~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~~~~ 386 (591)
T 2vgl_B 308 LIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEV-DVDFVRKAVRAIGRCAIKVEQ 386 (591)
T ss_dssp HHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhChh
Confidence 8875322111 0000 11 2345556666677 889999999999999986554
Q ss_pred HHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011328 319 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 319 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
... .+++.|++++......++..+..++.++..
T Consensus 387 ~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~ 419 (591)
T 2vgl_B 387 SAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDIFR 419 (591)
T ss_dssp HHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 322 245666777766666666666666666643
No 46
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.70 E-value=2.4e-14 Score=139.52 Aligned_cols=373 Identities=10% Similarity=0.091 Sum_probs=265.4
Q ss_pred hhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHH-HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC
Q 011328 27 LQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT 105 (488)
Q Consensus 27 ~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~ 105 (488)
+.-+.++.|+.+|.+++..+|..++..|..++........+.+. ..++++.|+.+|+++. +.+|..++..|.+++.++
T Consensus 119 ~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r-E~iRneallLL~~Lt~~n 197 (651)
T 3grl_A 119 KQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR-EVIRNDGVLLLQALTRSN 197 (651)
T ss_dssp HSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS-HHHHHHHHHHHHHHHTTC
T ss_pred cCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch-HHHHHHHHHHHHHHhcCC
Confidence 34588999999999999999999999999998876333555566 4599999999999998 899999999999999999
Q ss_pred chhhHHHHhCCCHHHHHHhhCCCC----HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccccc-----HhHH
Q 011328 106 SENTRVVIDHGAVPIFVRLLSSPT----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAK-----LSML 176 (488)
Q Consensus 106 ~~~~~~~~~~g~i~~L~~~L~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-----~~v~ 176 (488)
++.++.+.-.|+++.|+.+++.+. ..+.+-|+.++.+|.+.++..+..+.+.+.++.|..++....+ ....
T Consensus 198 ~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~ 277 (651)
T 3grl_A 198 GAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKV 277 (651)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHH
Confidence 999999999999999999998743 4888999999999999999899999999999999999842221 1122
Q ss_pred HH---HHHHHHHhhcCCCC-------CChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCCchhHHHHHHhC--
Q 011328 177 RN---ATWTLSNFCRGKPQ-------PLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQAVIEAG-- 242 (488)
Q Consensus 177 ~~---a~~~L~~l~~~~~~-------~~~~~~~~~~~~l~~ll~~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~-- 242 (488)
.+ ++.++.-++..... .......|+++.+++++... ...++..++.+++.+..+++...+.+.+..
T Consensus 278 ~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp 357 (651)
T 3grl_A 278 TNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAP 357 (651)
T ss_dssp HHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEES
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCC
Confidence 33 55555666554321 12334578899999998865 678999999999999998877666665532
Q ss_pred -------CHHHHHHhcCC-CCcchHhHHHHHHhHhhcCCchhhHHHhhC----------C---ChHHHHHHhcccchhhH
Q 011328 243 -------VCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINH----------Q---ALPCLLDLLTQNYKKSI 301 (488)
Q Consensus 243 -------~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----------~---~~~~L~~lL~~~~~~~v 301 (488)
++..|+.++.+ ....+|.+|+.++..+..+++.....+... . .-..+..-+-+. ++--
T Consensus 358 ~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~-d~~~ 436 (651)
T 3grl_A 358 SNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFST-DSLS 436 (651)
T ss_dssp SSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSS-CHHH
T ss_pred CCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccC-chHH
Confidence 33334444544 456889999999999999887544444321 0 112334444444 4433
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHc-----------CChHHHHHHHhcC-ChhHHHHHHHHHHHhccCCCHHHHHHHHHC
Q 011328 302 KKEACWTISNITAGNVNQIQAIIEA-----------GIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQ 369 (488)
Q Consensus 302 ~~~a~~~L~nl~~~~~~~~~~l~~~-----------~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~ 369 (488)
-..|+.++..+...+++....+..- ..++.+...|..+ ++.++.--+..|+.... +++.....+...
T Consensus 437 ~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~-e~p~AV~dFL~~ 515 (651)
T 3grl_A 437 NWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLS-NCPIAVTHFLHN 515 (651)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-CChHHHHHHHcC
Confidence 4568888888888877776655431 1255556666543 55565555666666655 456766666665
Q ss_pred C-ChHHHHhhcCC--CCHH--HHHHHHHHHHHHHHhhh
Q 011328 370 G-CIKPLCDLLNC--PDPR--IVTVCLEGLENILKAGE 402 (488)
Q Consensus 370 ~-~i~~L~~ll~~--~~~~--v~~~al~~L~~l~~~~~ 402 (488)
+ .+..|+..+.+ ++.+ ++-.+.-.|+-......
T Consensus 516 ~s~l~~L~~~i~~~~~~~~~lvqGL~a~LLGi~yef~~ 553 (651)
T 3grl_A 516 SANVPFLTGQIAENLGEEEQLVQGLCALLLGISIYFND 553 (651)
T ss_dssp TTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CchHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccC
Confidence 5 58999987743 2222 33334444554445443
No 47
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.68 E-value=3.4e-15 Score=136.82 Aligned_cols=259 Identities=15% Similarity=0.162 Sum_probs=202.1
Q ss_pred HHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc
Q 011328 69 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 148 (488)
Q Consensus 69 ~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~ 148 (488)
......++.|++.|.+++ +.+|..|+++|+++.. + +.++.|+.++.++++.+|..++++|+.+.....
T Consensus 19 ~~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~ 86 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK 86 (280)
T ss_dssp HHHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT
T ss_pred HHHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc
Confidence 345678999999999988 9999999999999873 1 357889999999999999999999999864332
Q ss_pred hhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 011328 149 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 228 (488)
Q Consensus 149 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~ 228 (488)
.... .++.+...+..++++.++..++++|..+....+ .....+++.+..++.++++.++..++++|+.+.
T Consensus 87 ~~~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 87 CEDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN 156 (280)
T ss_dssp THHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred cchH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence 2111 223333333367889999999999999975321 123467899999999999999999999999875
Q ss_pred cCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHH
Q 011328 229 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT 308 (488)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~ 308 (488)
. .+.++.|..++.++++.+|..++++|+.+....+ ..++.+...++++ ++.+|..|+++
T Consensus 157 ~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~a 215 (280)
T 1oyz_A 157 D-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIG 215 (280)
T ss_dssp -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHH
Confidence 3 2578999999999999999999999999853222 3567889999988 89999999999
Q ss_pred HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC-CCHHHH
Q 011328 309 ISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPRIV 387 (488)
Q Consensus 309 L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~ 387 (488)
|+++.. ...++.|+..+.+++ ++..++.+|+.+.. + ..++.|.+++.+ ++++++
T Consensus 216 L~~~~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~---~---------~~~~~L~~~l~~~~~~~~~ 270 (280)
T 1oyz_A 216 LSYRKD-----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD---K---------TLLPVLDTMLYKFDDNEII 270 (280)
T ss_dssp HHHTTC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC---G---------GGHHHHHHHHTTSSCCHHH
T ss_pred HHHhCC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc---h---------hhhHHHHHHHhcCCCcHHH
Confidence 999852 247888888888754 89999999999853 1 367788888864 566777
Q ss_pred HHHHHHHH
Q 011328 388 TVCLEGLE 395 (488)
Q Consensus 388 ~~al~~L~ 395 (488)
..++..+.
T Consensus 271 ~~~~~~l~ 278 (280)
T 1oyz_A 271 TSAIDKLK 278 (280)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 77776664
No 48
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.67 E-value=8.2e-15 Score=156.16 Aligned_cols=403 Identities=12% Similarity=0.132 Sum_probs=269.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh-
Q 011328 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT- 109 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~- 109 (488)
.++.+.+.+.+.++..+..|+.++..++............ ..+++.+++.+.+++ +.+|..++++++.++.......
T Consensus 370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcC
Confidence 3455566667888999999999999988653212222222 257889999999988 9999999999999986211100
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC-----chhHHHHHhcCChHHHHHHhcc-cccHhHHHHHHHHH
Q 011328 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-----PKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTL 183 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-----~~~~~~~~~~~~l~~L~~ll~~-~~~~~v~~~a~~~L 183 (488)
..-.-..+++.++..++++ +.++..+++++.+++... ......+ ...++.++..+.. +.++.++..++.++
T Consensus 448 ~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al 524 (861)
T 2bpt_A 448 PQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSAL 524 (861)
T ss_dssp TTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence 0000113577888888775 999999999999987531 1121222 1245667777742 33478999999999
Q ss_pred HHhhcCCCCCChhhhhchHHHHHHhhccC---------------ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHH
Q 011328 184 SNFCRGKPQPLFEQTRPALPALERLIHSN---------------DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 248 (488)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~l~~ll~~~---------------~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~ 248 (488)
..++...+.........++|.++..+... ...++..++.++..++...+........ .+++.+.
T Consensus 525 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~ 603 (861)
T 2bpt_A 525 TTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFF 603 (861)
T ss_dssp HHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHH
T ss_pred HHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHH
Confidence 99988765444444566777777776531 3457788999999888654432222222 5677788
Q ss_pred HhcCCCCc-chHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 011328 249 ELLRHPSP-SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 327 (488)
Q Consensus 249 ~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 327 (488)
..+.+.++ .++..++.+++.++..........+. .+++.+...+.++ ++.+|..++.+++.++....+...... ..
T Consensus 604 ~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ 680 (861)
T 2bpt_A 604 RLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS-DA 680 (861)
T ss_dssp HHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-HH
T ss_pred HHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH-HH
Confidence 88877766 89999999999998754443333333 4788888888776 888999999999999874333333333 24
Q ss_pred ChHHHHHHHhcCC--hhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC-----------HHHHHHHHHHH
Q 011328 328 IIGPLVNLLLNAE--FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD-----------PRIVTVCLEGL 394 (488)
Q Consensus 328 ~l~~L~~ll~~~~--~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~-----------~~v~~~al~~L 394 (488)
+++.++..+.+++ .++|..++.+++.++.........++- .+++.+.+.++... ..++..++.++
T Consensus 681 l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~--~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~ 758 (861)
T 2bpt_A 681 MMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN--DIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAY 758 (861)
T ss_dssp HHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 7888888888764 889999999999998754434444443 36777777776431 35778888888
Q ss_pred HHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC----CHHHHHHHHHHHHHhcCC
Q 011328 395 ENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD----NTEIYEKAVKILETYWVE 454 (488)
Q Consensus 395 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~----~~~v~~~a~~~l~~~~~~ 454 (488)
..++....... ..+...+.+ .++.+.....+. +..++..|..++..+...
T Consensus 759 ~~i~~~l~~~~--------~~~~~~~~~--i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~ 812 (861)
T 2bpt_A 759 VGIVAGLHDKP--------EALFPYVGT--IFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAM 812 (861)
T ss_dssp HHHHHHTTTCH--------HHHGGGHHH--HHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCH--------HHHHHHHHH--HHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHH
Confidence 88875432100 001222221 245555555442 789999999999888653
No 49
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.66 E-value=9.1e-15 Score=134.00 Aligned_cols=255 Identities=15% Similarity=0.115 Sum_probs=200.0
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328 29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
...++.|++.|.++++.++..|++.|.++.. .+.++.|++++++++ +.+|..|+++|+.+... +..
T Consensus 22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~-~~~ 87 (280)
T 1oyz_A 22 KLNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKIC-KKC 87 (280)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCC-TTT
T ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccc-ccc
Confidence 3679999999999999999999999999642 236788999999998 89999999999998752 221
Q ss_pred hHHHHhCCCHHHHH-HhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011328 109 TRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 187 (488)
Q Consensus 109 ~~~~~~~g~i~~L~-~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~ 187 (488)
.. .+++.|. .+++++++.+|..++++|+.+....+.... ..++.++..+ .+.++.++..++++|..+.
T Consensus 88 ~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 88 ED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVIN 156 (280)
T ss_dssp HH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC-
T ss_pred ch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHh-hCCCHHHHHHHHHHHHhcC
Confidence 11 1234444 246778999999999999999744332212 2467788888 7889999999999999875
Q ss_pred cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011328 188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 267 (488)
Q Consensus 188 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~ 267 (488)
.. ..++.++.++.++++.++..++++|+.+....+ ..++.|..++.++++.+|..|+.+|+
T Consensus 157 ~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~ 217 (280)
T 1oyz_A 157 DK----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLS 217 (280)
T ss_dssp ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CH----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 42 478999999999999999999999999853332 34678889999999999999999999
Q ss_pred HhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHH
Q 011328 268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKE 346 (488)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~ 346 (488)
.+.. ...++.|...++++ + +|..++++|+.+.. + ..++.|..++.+. ++++...
T Consensus 218 ~~~~-----------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~--~---------~~~~~L~~~l~~~~~~~~~~~ 272 (280)
T 1oyz_A 218 YRKD-----------KRVLSVLCDELKKN-T--VYDDIIEAAGELGD--K---------TLLPVLDTMLYKFDDNEIITS 272 (280)
T ss_dssp HTTC-----------GGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC--G---------GGHHHHHHHHTTSSCCHHHHH
T ss_pred HhCC-----------HhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc--h---------hhhHHHHHHHhcCCCcHHHHH
Confidence 9862 24678899999776 3 88999999998853 2 4788899999764 6778877
Q ss_pred HHHHHH
Q 011328 347 AAWAIS 352 (488)
Q Consensus 347 a~~aL~ 352 (488)
+..+|.
T Consensus 273 ~~~~l~ 278 (280)
T 1oyz_A 273 AIDKLK 278 (280)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 777764
No 50
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.66 E-value=1.3e-14 Score=154.68 Aligned_cols=397 Identities=14% Similarity=0.175 Sum_probs=265.9
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----------------CccHHHHHHcCCHHHHHHhhcCC------CC
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIER----------------SPPINEVIQSGVVPRFIEFLSRD------DF 87 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~----------------~~~~~~~~~~~~i~~L~~lL~~~------~~ 87 (488)
..++.+...+.+.++.++..|+..+..++.... ........ ..+++.++..+... +.
T Consensus 266 ~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~ 344 (861)
T 2bpt_A 266 ALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDD 344 (861)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCC
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhccccccccc
Confidence 345556677788899999999999988765420 01111122 45788888888652 12
Q ss_pred hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc-hhHHHHHhcCChHHHHHH
Q 011328 88 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCRDLVLSNGALMPLLAQ 166 (488)
Q Consensus 88 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~l 166 (488)
..++..+..+|..++...++. ++ ..+++.+...+.+.++..|+.++++++.++.... ..-..... ..++.++..
T Consensus 345 ~~~r~~a~~~L~~l~~~~~~~---~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~ 419 (861)
T 2bpt_A 345 WNVSMSAGACLQLFAQNCGNH---IL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNL 419 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHG
T ss_pred CcHHHHHHHHHHHHHHHccHh---HH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHH
Confidence 478999999999988622211 11 1346777778888899999999999999997643 21111111 356677777
Q ss_pred hcccccHhHHHHHHHHHHHhhcCCCC--CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc----hhHHHHHH
Q 011328 167 FNEHAKLSMLRNATWTLSNFCRGKPQ--PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN----DKIQAVIE 240 (488)
Q Consensus 167 l~~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~----~~~~~~~~ 240 (488)
+ .+.++.++..++|++..++..... ........+++.++..+.++ +.++..+++++.+++.... .......
T Consensus 420 l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~- 496 (861)
T 2bpt_A 420 M-NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY- 496 (861)
T ss_dssp G-GCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH-
T ss_pred c-CCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH-
Confidence 7 667899999999999999865321 12345678889999998775 8999999999999885421 1122222
Q ss_pred hCCHHHHHHhcCCCC--cchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcc--------------cchhhHHHH
Q 011328 241 AGVCPRLVELLRHPS--PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ--------------NYKKSIKKE 304 (488)
Q Consensus 241 ~~~l~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--------------~~~~~v~~~ 304 (488)
..+++.++..+.+.+ +.+|..++.+++.++...+......+. .+++.+++.+.. .....++..
T Consensus 497 ~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 575 (861)
T 2bpt_A 497 PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSN 575 (861)
T ss_dssp HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHH
Confidence 256788888887543 789999999999998765544333332 355666666542 114567889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCh-hHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC
Q 011328 305 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF-EIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 383 (488)
Q Consensus 305 a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~-~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 383 (488)
++.++.+++............ .+++.++..+...+. .++..++.+++.++.....+...++-. +++.|.+.+++++
T Consensus 576 ~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~--i~~~l~~~l~~~~ 652 (861)
T 2bpt_A 576 ILTVLAAVIRKSPSSVEPVAD-MLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET--FSPYLLKALNQVD 652 (861)
T ss_dssp HHHHHHHHHHHCGGGTGGGHH-HHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHhcccc
Confidence 999999998743332222222 477888888888776 899999999999986543344444433 7888888888888
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCC--HHHHHHHHHHHHHhc
Q 011328 384 PRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN--TEIYEKAVKILETYW 452 (488)
Q Consensus 384 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~--~~v~~~a~~~l~~~~ 452 (488)
++++..++.++..++...... +...+. ..++.+.+.+.+++ ++++..+...+..+.
T Consensus 653 ~~vr~~a~~~l~~l~~~~~~~-----------~~~~~~--~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~ 710 (861)
T 2bpt_A 653 SPVSITAVGFIADISNSLEED-----------FRRYSD--AMMNVLAQMISNPNARRELKPAVLSVFGDIA 710 (861)
T ss_dssp SHHHHHHHHHHHHHHHHTGGG-----------GHHHHH--HHHHHHHHHHHCTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhchh-----------ccchHH--HHHHHHHHHhCCccccHhhhHHHHHHHHHHH
Confidence 899999999999988765421 222221 22444555554443 677777766665443
No 51
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.65 E-value=1e-14 Score=148.35 Aligned_cols=362 Identities=14% Similarity=0.095 Sum_probs=260.3
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
-.++.+.+.|+++++.++..|+++|.++... + +. ..+++.+.++|.+++ +.+|..|+.++.++...+++..
T Consensus 107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~---~----~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v 177 (618)
T 1w63_A 107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGSS---E----MC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELM 177 (618)
T ss_dssp HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH---H----HH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH---H----HH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHH
Confidence 3567788899999999999999999997531 1 22 356888999999998 9999999999999998666543
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc--------------cccHhH
Q 011328 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--------------HAKLSM 175 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--------------~~~~~v 175 (488)
. ++++.+..++.+.++.++..|+.+|..++..+++....+ ...++.++..|.+ ..++-.
T Consensus 178 ~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 250 (618)
T 1w63_A 178 E-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFL 250 (618)
T ss_dssp G-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHH
T ss_pred H-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChH
Confidence 2 567888889999999999999999999987765432222 2467778877743 246778
Q ss_pred HHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc------cCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHH
Q 011328 176 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH------SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 249 (488)
Q Consensus 176 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~------~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 249 (488)
+..++.+|..++...+ .......+.+..++. +.+..+...+++++..+.... . +.. .+++.|..
T Consensus 251 q~~il~~L~~l~~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~-~----l~~-~a~~~L~~ 320 (618)
T 1w63_A 251 QVRILRLLRILGRNDD----DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSES-G----LRV-LAINILGR 320 (618)
T ss_dssp HHHHHHHHHHHTTTCH----HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCH-H----HHH-HHHHHHHH
T ss_pred HHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCH-H----HHH-HHHHHHHH
Confidence 8889999999887542 112344555555543 234678889999998875421 1 111 45678888
Q ss_pred hcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCCh
Q 011328 250 LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGII 329 (488)
Q Consensus 250 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l 329 (488)
++.++++.+|..|+.+|+.++...+.... .....++..+.++ +..+|..|+.++..++.... ... ++
T Consensus 321 ~L~~~d~~vr~~aL~~L~~i~~~~p~~~~-----~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~~n--v~~-----iv 387 (618)
T 1w63_A 321 FLLNNDKNIRYVALTSLLKTVQTDHNAVQ-----RHRSTIVDCLKDL-DVSIKRRAMELSFALVNGNN--IRG-----MM 387 (618)
T ss_dssp HHTCSSTTTHHHHHHHHHHHHHHHHHHHG-----GGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCSSS--THH-----HH
T ss_pred HHhCCCCchHHHHHHHHHHHHhhCHHHHH-----HHHHHHHHHccCC-ChhHHHHHHHHHHHHccccc--HHH-----HH
Confidence 89999999999999999999975543222 3566788899988 89999999999999987421 111 45
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCC
Q 011328 330 GPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGN 409 (488)
Q Consensus 330 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~ 409 (488)
+.|...+.+.+.++|..++.+++.++....+.... +++.|+++++.....+...++..+..++...+..
T Consensus 388 ~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~------~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l----- 456 (618)
T 1w63_A 388 KELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRW------HIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEM----- 456 (618)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHH------HHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCST-----
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHH------HHHHHHHHHHhccchhHHHHHHHHHHHHhcChhH-----
Confidence 67888888889999999999999999754322222 3677778887766666666777777777654432
Q ss_pred CCccchHHHHHHhhccHHHHHHhhcC--CCHHHHHHHHHHHHHhcC
Q 011328 410 TGGVNLFAQAIDDAEGLEKIENLQSH--DNTEIYEKAVKILETYWV 453 (488)
Q Consensus 410 ~~~~~~~~~~l~~~g~~~~L~~l~~~--~~~~v~~~a~~~l~~~~~ 453 (488)
+.. ++..|.++..+ ..+.+...+.|++..|-+
T Consensus 457 -------~~~-----~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~ 490 (618)
T 1w63_A 457 -------HAY-----TVQRLYKAILGDYSQQPLVQVAAWCIGEYGD 490 (618)
T ss_dssp -------HHH-----HHHHHHHHHHHCCSCSHHHHHHHHHHHHHHH
T ss_pred -------HHH-----HHHHHHHHHhcccccHHHHHHHHHHHhhhHH
Confidence 111 12333333322 334555679999998864
No 52
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.64 E-value=2.4e-14 Score=152.81 Aligned_cols=399 Identities=16% Similarity=0.178 Sum_probs=253.6
Q ss_pred ccHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch
Q 011328 30 ESLPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 107 (488)
Q Consensus 30 ~~i~~l~~~L~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 107 (488)
..++.+.+.+.++ ++.+|..|+.++..++..-............+++.+.+.+.+.+ +++|..++.+|..++...++
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~ 250 (876)
T 1qgr_A 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQ 250 (876)
T ss_dssp HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHH
Confidence 4466677778776 68999999999999875421000001111236777788887777 89999999999999975555
Q ss_pred hhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch------------------hHHHH--HhcCChHHHHHHh
Q 011328 108 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK------------------CRDLV--LSNGALMPLLAQF 167 (488)
Q Consensus 108 ~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~------------------~~~~~--~~~~~l~~L~~ll 167 (488)
.....+...+++.++..+.+.++.++..++..+..++..... ..... .-...++.++..+
T Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l 330 (876)
T 1qgr_A 251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (876)
T ss_dssp GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence 444444557889988888888999999999999888743110 00000 0012455666666
Q ss_pred cc------cccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc-hhHHHHHH
Q 011328 168 NE------HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIE 240 (488)
Q Consensus 168 ~~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~ 240 (488)
.+ +.+..++..+..++..++...+. .....+++.+...+.++++.++..++++++.++.... +......
T Consensus 331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~- 406 (876)
T 1qgr_A 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV- 406 (876)
T ss_dssp TCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-
T ss_pred hcccccccccccHHHHHHHHHHHHHHHHCcH---hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-
Confidence 32 23457888999999888865431 2345778888888888999999999999999997654 3333333
Q ss_pred hCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhh--HHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCH-
Q 011328 241 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT--QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV- 317 (488)
Q Consensus 241 ~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~- 317 (488)
..+++.++..+.++++.+|..|++++++++...+... ...+ ..+++.++..+.+. +.++..+++++.+++....
T Consensus 407 ~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~ 483 (876)
T 1qgr_A 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSAE--PRVASNVCWAFSSLAEAAYE 483 (876)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhhh
Confidence 3578999999999999999999999999997544321 1111 24667778888663 7789999999999885311
Q ss_pred -------------HHHHHHHHcCChHHHHHHHhcC---ChhHHHHHH---------------------------------
Q 011328 318 -------------NQIQAIIEAGIIGPLVNLLLNA---EFEIKKEAA--------------------------------- 348 (488)
Q Consensus 318 -------------~~~~~l~~~~~l~~L~~ll~~~---~~~v~~~a~--------------------------------- 348 (488)
+.....+ ..+++.|+..+... +..++..+.
T Consensus 484 ~~~~~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 562 (876)
T 1qgr_A 484 AADVADDQEEPATYCLSSSF-ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVL 562 (876)
T ss_dssp TTSCTTSCCCCCCCSSTTTH-HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhHhH-HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHH
Confidence 0011111 12445555554432 223444444
Q ss_pred -----------------------HHHHHhccCCC-HHHHHHHHHCCChHHHHhhcCCCC--HHHHHHHHHHHHHHHHhhh
Q 011328 349 -----------------------WAISNATSGGS-NEQIKFLVSQGCIKPLCDLLNCPD--PRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 349 -----------------------~aL~~l~~~~~-~~~~~~l~~~~~i~~L~~ll~~~~--~~v~~~al~~L~~l~~~~~ 402 (488)
.++..++...+ .....++ ..+++.+..+++... +.++..++.++..++....
T Consensus 563 ~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~ 640 (876)
T 1qgr_A 563 QMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS--DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLG 640 (876)
T ss_dssp TTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH--HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHG
T ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH--HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHH
Confidence 44444443333 2222221 125667777777654 4788899999999986533
Q ss_pred hhhccCCCCccchHHHHHHhhccHHHHHHhhcCC-CHHHHHHHHHHHHHhc
Q 011328 403 AEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-NTEIYEKAVKILETYW 452 (488)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~-~~~v~~~a~~~l~~~~ 452 (488)
..- .++... .++.+...+.+. +++++..|...+..+.
T Consensus 641 ~~~--------~~~~~~-----~~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 678 (876)
T 1qgr_A 641 GEF--------LKYMEA-----FKPFLGIGLKNYAEYQVCLAAVGLVGDLC 678 (876)
T ss_dssp GGG--------GGGHHH-----HHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred hhH--------HHHHHH-----HHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence 211 112222 245555555544 7888888777766554
No 53
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.63 E-value=9.7e-15 Score=144.00 Aligned_cols=391 Identities=12% Similarity=0.108 Sum_probs=267.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchhhH
Q 011328 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
+..++..+.++|..+|..|-..|.++.... ..+++..|..++.+++ ++.+|..|+..|.++.........
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~ 73 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK 73 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence 445777778899999999999998854311 1246677778877652 489999999999998763311110
Q ss_pred H--------H---HhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc--cHhHHH
Q 011328 111 V--------V---IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLR 177 (488)
Q Consensus 111 ~--------~---~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~--~~~v~~ 177 (488)
. + ....+-..++..+.++++.+ ..++.+++.++...... .. -.+.++.++..+ .+. ++.++.
T Consensus 74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~-~~--w~~ll~~L~~~l-~~~~~~~~~r~ 148 (462)
T 1ibr_B 74 AQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV-NQ--WPELIPQLVANV-TNPNSTEHMKE 148 (462)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG-TC--CTTHHHHHHHHH-HCTTCCHHHHH
T ss_pred HHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc-cc--cHHHHHHHHHHh-ccCCCCHHHHH
Confidence 0 0 01123456777788777778 88899999887532110 00 124677788888 555 888999
Q ss_pred HHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCCchhHH-HHHHhCCHHHHHHhcCC
Q 011328 178 NATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLRH 253 (488)
Q Consensus 178 ~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~--~~~v~~~al~~L~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~ 253 (488)
.++.+|..++... +.........+++.+...+.++ +..++..+++++.++...-.+... .....-+++.+...+.+
T Consensus 149 ~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 228 (462)
T 1ibr_B 149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC 228 (462)
T ss_dssp HHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence 9999999999753 2222334466888899999887 789999999999987643221110 01111246667777788
Q ss_pred CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHH---------------
Q 011328 254 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN--------------- 318 (488)
Q Consensus 254 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~--------------- 318 (488)
+++.++..++.++..++...+......+...+++.++..+++. ++.++..++..+..++.....
T Consensus 229 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 307 (462)
T 1ibr_B 229 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPP 307 (462)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCc
Confidence 8899999999999999876554333333326777888888877 889999999999888753110
Q ss_pred ------HHHHHHHcCChHHHHHHHhcC-------ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHH
Q 011328 319 ------QIQAIIEAGIIGPLVNLLLNA-------EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385 (488)
Q Consensus 319 ------~~~~l~~~~~l~~L~~ll~~~-------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 385 (488)
...... ..++|.++..+... ++.+|..|+.+|..++......... .+++.+...+.++++.
T Consensus 308 ~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~-----~~~~~l~~~l~~~~~~ 381 (462)
T 1ibr_B 308 EHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-----HVLPFIKEHIKNPDWR 381 (462)
T ss_dssp SCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-----HHHHHHHHHTTCSSHH
T ss_pred cchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhcCCChH
Confidence 111111 23567777777532 4579999999999998654322222 3577888889999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 011328 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEE 455 (488)
Q Consensus 386 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 455 (488)
++..++.+++.+........ +...+ ...++.+..++.++++.|+..|.+.+.++...-
T Consensus 382 ~r~aal~~l~~l~~~~~~~~----------~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 382 YRDAAVMAFGCILEGPEPSQ----------LKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp HHHHHHHHHHHTSSSSCTTT----------TCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhcCCcHHH----------HHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999885322110 01111 345788888899999999999999999988654
No 54
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.61 E-value=8.3e-14 Score=153.77 Aligned_cols=407 Identities=12% Similarity=0.139 Sum_probs=271.7
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011328 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
.++.+++.+.+.|+++|..|...|.+.+..... ..+.-....+++.+++.|.+++ +++|..|+.+|+.++...++.
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~-~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~-- 82 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSI-KLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY-- 82 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCC-SCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH--
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHccccc-CCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH--
Confidence 467899999999999999999999987654311 1111112346788889998887 899999999999999754431
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhH-----HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHH
Q 011328 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR-----DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 185 (488)
Q Consensus 111 ~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~-----~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~ 185 (488)
.+ ..+++.++..+.++++.+|..++.+|+.++....... ..-.-...++.++..+.++.+..++..++.++..
T Consensus 83 ~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 83 QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD 160 (1230)
T ss_dssp HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 11 1357888888888888999999999999875433210 0011123677888888435778999999999999
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC-CcchHhHHHH
Q 011328 186 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALR 264 (488)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~ 264 (488)
++...+..-......+++.+...+.+++..++..++.+++.++...++. ++ ..+++.++..+.+. ++.++..++.
T Consensus 161 ~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~~ 236 (1230)
T 1u6g_C 161 MLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYIQ 236 (1230)
T ss_dssp HHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHHH
Confidence 9864322222345778888889999999999999999999999765432 11 24577777777543 3578888999
Q ss_pred HHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-------
Q 011328 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL------- 337 (488)
Q Consensus 265 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~------- 337 (488)
+++.++...+......+ ..+++.++..+.+. ++.+|..++.++..++...++.....+. .+++.++..+.
T Consensus 237 ~l~~l~~~~~~~~~~~l-~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~~ 313 (1230)
T 1u6g_C 237 CIAAISRQAGHRIGEYL-EKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNY 313 (1230)
T ss_dssp HHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC-----
T ss_pred HHHHHHHHhHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCCC
Confidence 99999875443322222 36889999999887 8899999999999988742221111111 13333333221
Q ss_pred ------------------------------cCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHH
Q 011328 338 ------------------------------NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIV 387 (488)
Q Consensus 338 ------------------------------~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 387 (488)
+..+.+|..|+.++..++.........++ ..+++.+...+.+.++.++
T Consensus 314 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~d~~~~Vr 391 (1230)
T 1u6g_C 314 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY--KTVSPALISRFKEREENVK 391 (1230)
T ss_dssp -------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH--TTTHHHHHSTTSCSSSHHH
T ss_pred cccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH--HHHHHHHHHHcCCCchHHH
Confidence 11246799999999999874432122222 3578889899988899999
Q ss_pred HHHHHHHHHHHHhhhhhhccCC-------CCcc-chHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011328 388 TVCLEGLENILKAGEAEKNMGN-------TGGV-NLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 388 ~~al~~L~~l~~~~~~~~~~~~-------~~~~-~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~ 454 (488)
..++.++..++........... .++. ..+...+ ...++.+.+.+.++++.++..+...+..+...
T Consensus 392 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~ 464 (1230)
T 1u6g_C 392 ADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV--PNIVKALHKQMKEKSVKTRQCCFNMLTELVNV 464 (1230)
T ss_dssp HHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT--THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh--hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 9999999888764321000000 0000 0001111 12355566667888899998888888877654
No 55
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.61 E-value=4.9e-14 Score=150.45 Aligned_cols=408 Identities=14% Similarity=0.150 Sum_probs=263.1
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh-
Q 011328 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT- 109 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~- 109 (488)
.++.+...+.++++.+|..|+.++..++.....+...... ..+++.++..+++++ +.+|..|++++++++...+...
T Consensus 367 ~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~ 444 (876)
T 1qgr_A 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAI 444 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGGTS
T ss_pred HHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCchhcc
Confidence 4555667777899999999999999987654212222222 458899999999988 9999999999999987433210
Q ss_pred -HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc---------------hhHHHHHhcCChHHHHHHhccc--c
Q 011328 110 -RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP---------------KCRDLVLSNGALMPLLAQFNEH--A 171 (488)
Q Consensus 110 -~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~---------------~~~~~~~~~~~l~~L~~ll~~~--~ 171 (488)
... -..+++.++..+.++ +.++..++++|.+++.... .....+ ...++.++..+... .
T Consensus 445 ~~~~-l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~ 520 (876)
T 1qgr_A 445 NDVY-LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGH 520 (876)
T ss_dssp STTT-HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSC
T ss_pred cHHH-HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcc
Confidence 011 114577888888774 8999999999999974311 011111 12455666666432 1
Q ss_pred cHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcc----------C-C----hhHHHHHHHHHHHhccCCc-hhH
Q 011328 172 KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS----------N-D----DEVLTDACWALSYLSDGTN-DKI 235 (488)
Q Consensus 172 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~----------~-~----~~v~~~al~~L~~l~~~~~-~~~ 235 (488)
+..++..+..++..++...+..........++.++..+.. . + +.++..++.++..++...+ ...
T Consensus 521 ~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~ 600 (876)
T 1qgr_A 521 QNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA 600 (876)
T ss_dssp STTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred hhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhh
Confidence 4578888999999998876544445556777777766652 1 2 4567888999999987655 333
Q ss_pred HHHHHhCCHHHHHHhcCCCC--cchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHh
Q 011328 236 QAVIEAGVCPRLVELLRHPS--PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 313 (488)
Q Consensus 236 ~~~~~~~~l~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~ 313 (488)
.... ..+++.++.++.+.. +.++..++.+++.++..........++ .+++.+...+.+..++.+|..++++++.++
T Consensus 601 ~~~~-~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 678 (876)
T 1qgr_A 601 LQIS-DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLC 678 (876)
T ss_dssp HTTH-HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence 3222 257788888888764 478999999999998754333333333 367888888876546789999999999998
Q ss_pred cCCHHHHHHHHHcCChHHHHHHHhc--CChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC--------
Q 011328 314 AGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD-------- 383 (488)
Q Consensus 314 ~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~-------- 383 (488)
....+....... .+++.++..+.+ .+.+++..+++++++++.....+...++- .+++.|.+.++.+.
T Consensus 679 ~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~--~~~~~l~~~~~~~~~~~d~~~~ 755 (876)
T 1qgr_A 679 RALQSNIIPFCD-EVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLE--VVLNTLQQASQAQVDKSDYDMV 755 (876)
T ss_dssp HHHGGGGHHHHH-HHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHH--HHHHHHHHHHTCCCCTTCHHHH
T ss_pred HHHHHhhhhhHH-HHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHH--HHHHHHHHHHhccCCCCChHHH
Confidence 732222333332 478888888887 36789999999999998633333323321 35666666665432
Q ss_pred ---HHHHHHHHHHHHHHHHhhhhhhc--cCCCCccchHHHHHHhhccHHHHHHhhcCC--CHHHHHHHHHHHHHhcCC
Q 011328 384 ---PRIVTVCLEGLENILKAGEAEKN--MGNTGGVNLFAQAIDDAEGLEKIENLQSHD--NTEIYEKAVKILETYWVE 454 (488)
Q Consensus 384 ---~~v~~~al~~L~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~--~~~v~~~a~~~l~~~~~~ 454 (488)
..++..++.++..++........ ..+.....+|...+ +..+..+..++ +..++..|..++..+...
T Consensus 756 ~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~ 828 (876)
T 1qgr_A 756 DYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDLCTA 828 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 26778888888888765321100 00000011122222 34455554555 789999999998877644
No 56
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.60 E-value=1.4e-13 Score=139.93 Aligned_cols=383 Identities=13% Similarity=0.113 Sum_probs=257.8
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
..++.+.++|.+.++.+|..|+.++.++.... ++.. .++++.+..+|.+.+ +.++..|+.+|..++..+++..
T Consensus 142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v-----~~~~~~l~~lL~D~d-~~V~~~Al~~L~~i~~~~~~~~ 214 (618)
T 1w63_A 142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PELM-----EMFLPATKNLLNEKN-HGVLHTSVVLLTEMCERSPDML 214 (618)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGG-----GGGGGGTTTSTTCCC-HHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHHH-----HHHHHHHHHHhCCCC-HhHHHHHHHHHHHHHHhChHHH
Confidence 44788899999999999999999999998764 3322 267888899999988 9999999999999998655543
Q ss_pred HHHHhCCCHHHHHHhhCC---------------CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc-----c
Q 011328 110 RVVIDHGAVPIFVRLLSS---------------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-----E 169 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~~---------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-----~ 169 (488)
..+. ..++.++..|.+ .++-.+...+.+|+.++..++...+ ...+.|..++. +
T Consensus 215 ~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~ 287 (618)
T 1w63_A 215 AHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSK 287 (618)
T ss_dssp HHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSS
T ss_pred HHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhcccccc
Confidence 3332 567777776642 4788889999999999877654322 23334444431 2
Q ss_pred cccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHH
Q 011328 170 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 249 (488)
Q Consensus 170 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 249 (488)
+.+..+...+++++..+... ......+++.+..++.+.++.++..++.+|..++...+... . .....++.
T Consensus 288 ~~~~aV~~ea~~~i~~l~~~-----~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~----~-~~~~~i~~ 357 (618)
T 1w63_A 288 NVGNAILYETVLTIMDIKSE-----SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAV----Q-RHRSTIVD 357 (618)
T ss_dssp THHHHHHHHHHHHHHHSCCC-----HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHH----G-GGHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHH----H-HHHHHHHH
Confidence 34567888888888886432 12234678888889998899999999999999987654322 2 45678888
Q ss_pred hcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC---H-HHHHHHH-
Q 011328 250 LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN---V-NQIQAII- 324 (488)
Q Consensus 250 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~---~-~~~~~l~- 324 (488)
++.+++..+|..|+.++..++.... ... +++.+...+.+. +.++|..++.+++.++... . .....++
T Consensus 358 ~l~d~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~-d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~ 429 (618)
T 1w63_A 358 CLKDLDVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSC-EPEFKADCASGIFLAAEKYAPSKRWHIDTIMR 429 (618)
T ss_dssp GGGSSCHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHH
T ss_pred HccCCChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 8998889999999999999986432 332 346677777777 7889999999998888631 1 1111111
Q ss_pred --H-c------------------------CChHHHHHHHhcC--ChhHHHHHHHHHHHhccCC-------------CHHH
Q 011328 325 --E-A------------------------GIIGPLVNLLLNA--EFEIKKEAAWAISNATSGG-------------SNEQ 362 (488)
Q Consensus 325 --~-~------------------------~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~-------------~~~~ 362 (488)
. . .++..|+..+.+. ...+...++|+|+..+... .+.
T Consensus 430 lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~- 508 (618)
T 1w63_A 430 VLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTED- 508 (618)
T ss_dssp HHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHH-
T ss_pred HHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHH-
Confidence 1 0 1344455555542 2344455777777665210 111
Q ss_pred HHHHHHCCChHHHHhhcC--CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHH
Q 011328 363 IKFLVSQGCIKPLCDLLN--CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEI 440 (488)
Q Consensus 363 ~~~l~~~~~i~~L~~ll~--~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v 440 (488)
.+++.|..+++ ..++.++..++.++.++....+.. ...+. ..|..+..+.+.+|
T Consensus 509 -------~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~------------~~~l~-----~~L~~~~~~~d~ev 564 (618)
T 1w63_A 509 -------EVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCT------------VNRIK-----KVVSIYGSSIDVEL 564 (618)
T ss_dssp -------HHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSC------------HHHHH-----HHHHHHTTCSCHHH
T ss_pred -------HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcch------------HHHHH-----HHHHHhcCCCCHHH
Confidence 13445555554 467889999999999887665421 22232 34666778899999
Q ss_pred HHHHHHHHHHhcCCCC----CCCCCCCCCCCCC
Q 011328 441 YEKAVKILETYWVEED----EDEPLPPGDATQA 469 (488)
Q Consensus 441 ~~~a~~~l~~~~~~~~----~~~~~~~~~~~~~ 469 (488)
|++|...+.-+....+ --+++|++.+.+.
T Consensus 565 rdRA~~y~~ll~~~~~~~~~vl~~~P~~~~~~~ 597 (618)
T 1w63_A 565 QQRAVEYNALFKKYDHMRSALLERMPVMEKVTT 597 (618)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHSCCCCCCC---
T ss_pred HHHHHHHHHHHcCcHHHHHHHhhcCCCCCcccc
Confidence 9999988776544211 1134777665433
No 57
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.58 E-value=1.2e-14 Score=143.41 Aligned_cols=360 Identities=14% Similarity=0.120 Sum_probs=242.7
Q ss_pred cHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCCcc----------HHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHH
Q 011328 31 SLPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPP----------INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWAL 98 (488)
Q Consensus 31 ~i~~l~~~L~s~--~~~~~~~a~~~L~~l~~~~~~~~----------~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L 98 (488)
.+..|+..+.++ ++.+|..|+..|.+++....... ...-....+-..++..|.+++ +.+ ..++.++
T Consensus 36 ~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~~i 113 (462)
T 1ibr_B 36 FLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQCV 113 (462)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHHH
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHHHH
Confidence 344566666654 68999999999999876431000 000112234456777888877 678 8899999
Q ss_pred HHhcCCC-chhhHHHHhCCCHHHHHHhhCCC--CHHHHHHHHHHHhhhhCCC-chhHHHHHhcCChHHHHHHhcccc-cH
Q 011328 99 TNIASGT-SENTRVVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHA-KL 173 (488)
Q Consensus 99 ~~l~~~~-~~~~~~~~~~g~i~~L~~~L~~~--~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~-~~ 173 (488)
+.++... ++. .-.++++.|+..+.++ ++.++..++.+|..++... +....... ...++.++..+.+.. +.
T Consensus 114 ~~ia~~~~~~~----~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~ 188 (462)
T 1ibr_B 114 AGIACAEIPVN----QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSN 188 (462)
T ss_dssp HHHHHHHGGGT----CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCH
T ss_pred HHHHHHhcccc----ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCH
Confidence 9998732 210 1136789999999887 8999999999999998643 21111111 125667777774332 78
Q ss_pred hHHHHHHHHHHHhhcCCC--CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc
Q 011328 174 SMLRNATWTLSNFCRGKP--QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 251 (488)
Q Consensus 174 ~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL 251 (488)
.++..+++++.++..... .........+++.+...+.+++..++..++.++..++...+......+..++++.++..+
T Consensus 189 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~ 268 (462)
T 1ibr_B 189 NVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM 268 (462)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998764321 001111122466777777788999999999999999865544322222225667777778
Q ss_pred CCCCcchHhHHHHHHhHhhcCCch-----------------hhHHHhh---CCChHHHHHHhccc------chhhHHHHH
Q 011328 252 RHPSPSVLIPALRTVGNIVTGDDM-----------------QTQCIIN---HQALPCLLDLLTQN------YKKSIKKEA 305 (488)
Q Consensus 252 ~~~~~~v~~~a~~~L~~l~~~~~~-----------------~~~~~~~---~~~~~~L~~lL~~~------~~~~v~~~a 305 (488)
.+.++.++..++..+..++..... ....+.+ ..+++.++..+... .++.+|..|
T Consensus 269 ~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a 348 (462)
T 1ibr_B 269 KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAA 348 (462)
T ss_dssp HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHH
Confidence 888899999999999888763200 0000111 23556666666432 145789999
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHH
Q 011328 306 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385 (488)
Q Consensus 306 ~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 385 (488)
+.++..++...++ .++ ..+++.+...+.++++.+|..|+.+++.++.+..++...... ..+++.+...++++++.
T Consensus 349 ~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~ 423 (462)
T 1ibr_B 349 GVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVV 423 (462)
T ss_dssp HHHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHH
Confidence 9999999873222 122 236777888888889999999999999999765422111111 35788999999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 011328 386 IVTVCLEGLENILKAGE 402 (488)
Q Consensus 386 v~~~al~~L~~l~~~~~ 402 (488)
++..|+++|.++.....
T Consensus 424 Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 424 VRDTAAWTVGRICELLP 440 (462)
T ss_dssp HHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999987654
No 58
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.56 E-value=1.5e-13 Score=151.73 Aligned_cols=399 Identities=12% Similarity=0.142 Sum_probs=264.2
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCcc----HHHHHHcCCHHHHHHhhcC-CCChhHHHHHHHHHHHhcCC
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP----INEVIQSGVVPRFIEFLSR-DDFPQLQFEAAWALTNIASG 104 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~~~i~~L~~lL~~-~~~~~v~~~a~~~L~~l~~~ 104 (488)
..++.++..+.++++.+|..|+.+|..++....... ...-....++|.|++.+.+ ++ ..++..|+.++..++..
T Consensus 86 ~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 86 TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHH
Confidence 345667777777777888888888888775542210 0111234578999999984 66 89999999999999852
Q ss_pred CchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHH
Q 011328 105 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS 184 (488)
Q Consensus 105 ~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 184 (488)
.++..... -..+++.+...+.++++.+|..|+.+++.++...+. .+ -...++.++..+....+..++..++.++.
T Consensus 165 ~~~~l~~~-~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~ 239 (1230)
T 1u6g_C 165 QGGLLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIA 239 (1230)
T ss_dssp TCSSCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHH
T ss_pred hHhHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 22111001 123567778888888999999999999999875442 11 12357778887754444567778888888
Q ss_pred HhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-----------
Q 011328 185 NFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH----------- 253 (488)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~----------- 253 (488)
.++...+..-......+++.+...+.+.++.++..++.++..++...+........ .+++.++..+..
T Consensus 240 ~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~~~~d~~ 318 (1230)
T 1u6g_C 240 AISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNYDDEDE 318 (1230)
T ss_dssp HHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC----------
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCCCccccc
Confidence 88875433222345789999999999889999999999999988654433222222 344555544431
Q ss_pred --------------------------CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHH
Q 011328 254 --------------------------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACW 307 (488)
Q Consensus 254 --------------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~ 307 (488)
..+.+|..|+.++..++...+......+ ..+++.++..+.+. +..+|..++.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~ 396 (1230)
T 1u6g_C 319 DENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFH 396 (1230)
T ss_dssp --------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHH
T ss_pred ccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHH
Confidence 1235688899999998875443333333 35778888888777 8899999999
Q ss_pred HHHHHhcC--C-----------------HHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHH
Q 011328 308 TISNITAG--N-----------------VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS 368 (488)
Q Consensus 308 ~L~nl~~~--~-----------------~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~ 368 (488)
++..+... . .......+ ..+++.+...+.++++.+|..++.+|+.++.........++
T Consensus 397 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l-- 473 (1230)
T 1u6g_C 397 AYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI-- 473 (1230)
T ss_dssp HHHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--
T ss_pred HHHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH--
Confidence 88877641 1 11112222 23667777778888999999999999998864321111121
Q ss_pred CCChHHHHhhcCCCCH--HHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHH
Q 011328 369 QGCIKPLCDLLNCPDP--RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 446 (488)
Q Consensus 369 ~~~i~~L~~ll~~~~~--~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~ 446 (488)
..+++.+...++++.+ .++..++..+..++....... +...+. ..++.|.....+++..++..|..
T Consensus 474 ~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~----------~~~~l~--~llp~L~~~l~d~~~~v~~~al~ 541 (1230)
T 1u6g_C 474 PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQV----------FHPHVQ--ALVPPVVACVGDPFYKITSEALL 541 (1230)
T ss_dssp HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGG----------GHHHHT--TTHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHH----------HHhHHH--HHHHHHHHHHcccchHHHHHHHH
Confidence 1357888888887654 888888888888875322110 233332 34667777777788888777777
Q ss_pred HHHHhc
Q 011328 447 ILETYW 452 (488)
Q Consensus 447 ~l~~~~ 452 (488)
.+..+.
T Consensus 542 ~l~~l~ 547 (1230)
T 1u6g_C 542 VTQQLV 547 (1230)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776655
No 59
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.45 E-value=4.9e-12 Score=110.44 Aligned_cols=188 Identities=20% Similarity=0.200 Sum_probs=157.7
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
+.++.|++.|.++++.++..|+..|..+.. .+.++.|+++|.+++ +.+|..|+++|+.+..
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSC-HHHHHHHHHHHHHHCC------
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC------
Confidence 778999999999999999999999998632 257899999999988 9999999999999864
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
.+.++.|+..+.++++.+|..++++|+.+.. ...++.|+..+ .++++.++..++++|..+..
T Consensus 80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEIGD- 141 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC-
Confidence 2468999999999999999999999999853 13577888888 78899999999999999853
Q ss_pred CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011328 190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 269 (488)
Q Consensus 190 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l 269 (488)
...++.+..++.++++.++..++.+|+.+.. ...++.|..++.++++.+|..|..+|..+
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 3578999999999999999999999999843 14567788888889999999999999998
Q ss_pred hcCCc
Q 011328 270 VTGDD 274 (488)
Q Consensus 270 ~~~~~ 274 (488)
.....
T Consensus 202 ~~~~~ 206 (211)
T 3ltm_A 202 KSFNH 206 (211)
T ss_dssp -----
T ss_pred CCCCC
Confidence 76443
No 60
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.44 E-value=4.7e-12 Score=109.61 Aligned_cols=184 Identities=20% Similarity=0.204 Sum_probs=157.3
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
+..+.+++.|.++++.++..|+..|..+.. .+.++.|+++|.+++ +.+|..|+++|+.+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD------ 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC------
Confidence 667899999999999999999999998542 246889999999888 9999999999999864
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
...++.|+..+.++++.+|..++++|+.+.. + ..++.++..+ .+.++.++..++++|..+..
T Consensus 75 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~- 136 (201)
T 3ltj_A 75 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--E---------RAVEPLIKAL-KDEDWFVRIAAAFALGEIGD- 136 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHTC-
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC-
Confidence 2468999999999999999999999999843 1 2577888888 77899999999999999853
Q ss_pred CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011328 190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 269 (488)
Q Consensus 190 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l 269 (488)
...++.+..++.++++.++..++.+|+.+.. ...++.|..++.++++.+|..|..+|..+
T Consensus 137 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3688999999999999999999999999832 13567788888888999999999999886
Q ss_pred h
Q 011328 270 V 270 (488)
Q Consensus 270 ~ 270 (488)
.
T Consensus 197 ~ 197 (201)
T 3ltj_A 197 K 197 (201)
T ss_dssp C
T ss_pred H
Confidence 4
No 61
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.43 E-value=1.5e-11 Score=106.46 Aligned_cols=184 Identities=20% Similarity=0.238 Sum_probs=157.4
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCCh
Q 011328 116 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 195 (488)
Q Consensus 116 g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 195 (488)
+..+.+++.|+++++.+|..|++.|+.+.. ...++.++..+ .+.++.++..++++|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence 457899999999999999999999998753 13578889999 77899999999999998753
Q ss_pred hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch
Q 011328 196 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 275 (488)
Q Consensus 196 ~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 275 (488)
...++.+..++.++++.++..++++|+.+.. .+.++.|..++.++++.+|..|+++|+.+..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 2678999999999999999999999998753 1467888999999999999999999999853
Q ss_pred hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011328 276 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 355 (488)
Q Consensus 276 ~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~ 355 (488)
...++.|..++.++ ++.+|..|+++|+.+. .++ .++.|..++.++++.||..|..+|.++-
T Consensus 137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GER---------VRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SHH---------HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--chh---------HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 24678899999988 9999999999999993 233 5777888899999999999999999875
No 62
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.43 E-value=8.7e-12 Score=108.81 Aligned_cols=187 Identities=21% Similarity=0.216 Sum_probs=157.8
Q ss_pred cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhH
Q 011328 72 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151 (488)
Q Consensus 72 ~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (488)
.+.++.|+++|++++ +.+|..|+..|+.+.. .+.++.|+.++.++++.+|..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 467899999999988 9999999999998864 2568999999999999999999999999852
Q ss_pred HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011328 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 231 (488)
Q Consensus 152 ~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 231 (488)
.+.++.++..+ .+.++.++..++++|..+.. ...++.+..++.++++.++..++.+|+.+..
T Consensus 80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 13577888888 77889999999999998854 3578999999999999999999999999843
Q ss_pred chhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011328 232 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 311 (488)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n 311 (488)
...++.|..++.++++.++..++.+|+.+.. ...++.|..+++++ ++.+|..|..+|.+
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET 200 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence 1467889999999999999999999999853 13567788899888 89999999999999
Q ss_pred HhcC
Q 011328 312 ITAG 315 (488)
Q Consensus 312 l~~~ 315 (488)
+...
T Consensus 201 ~~~~ 204 (211)
T 3ltm_A 201 HKSF 204 (211)
T ss_dssp ----
T ss_pred cCCC
Confidence 8764
No 63
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.39 E-value=2.7e-11 Score=122.73 Aligned_cols=367 Identities=11% Similarity=0.094 Sum_probs=243.7
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhh--cCCCChhHHHHHHHHHHHhcCCCchh
Q 011328 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFL--SRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL--~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
.++.+.+.|+++++.++-.|++++.++.. .+ +. ..+++.+.+++ .+.+ +.+|..|+.++.++...+|+.
T Consensus 112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~e----~~-~~l~~~v~~~l~~~d~~-~~VRK~A~~al~kl~~~~p~~ 182 (621)
T 2vgl_A 112 INNAIKNDLASRNPTFMGLALHCIANVGS---RE----MA-EAFAGEIPKILVAGDTM-DSVKQSAALCLLRLYRTSPDL 182 (621)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHCC---HH----HH-HHHTTHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhccCC---HH----HH-HHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhChhh
Confidence 46678888899999999999999999743 12 22 24678888999 7788 999999999999999855543
Q ss_pred hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc----c--c----------cc
Q 011328 109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN----E--H----------AK 172 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~----~--~----------~~ 172 (488)
.. ..+.++.+.++|.+.++.++..|+.++..++..++.. + ...++.++..|. . . .+
T Consensus 183 ~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~ 254 (621)
T 2vgl_A 183 VP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPA 254 (621)
T ss_dssp CC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEES
T ss_pred cC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCC
Confidence 32 2478999999999999999999999999998765431 1 123344443331 1 1 15
Q ss_pred HhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh---------ccCC--hhHHHHHHHHHHHhccCCchhHHHHHHh
Q 011328 173 LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI---------HSND--DEVLTDACWALSYLSDGTNDKIQAVIEA 241 (488)
Q Consensus 173 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll---------~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~ 241 (488)
+-.+...+..+..++...+..........+..++..+ ++.+ ..|...+..++..+.. .++ +..
T Consensus 255 ~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~----~~~- 328 (621)
T 2vgl_A 255 PWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPN----LLV- 328 (621)
T ss_dssp HHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHH----HHH-
T ss_pred chHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHH----HHH-
Confidence 6677777777777764321111111222333333322 1122 3788888888888853 222 222
Q ss_pred CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhc-ccchhhHHHHHHHHHHHHhcCCHHHH
Q 011328 242 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQI 320 (488)
Q Consensus 242 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~ 320 (488)
.++..|..++.++++.+|..++..|..++...+. . ..+. .....++..+. ++ +..+|..++.++..++. +.+.
T Consensus 329 ~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~-~~~~-~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~--~~Nv 402 (621)
T 2vgl_A 329 RACNQLGQFLQHRETNLRYLALESMCTLASSEFS-H-EAVK-THIETVINALKTER-DVSVRQRAVDLLYAMCD--RSNA 402 (621)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-H-HHHH-TTHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC--HHHH
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-H-HHHH-HHHHHHHHHhccCC-CHhHHHHHHHHHHHHcC--hhhH
Confidence 4567788889888999999999999999876542 1 1222 45677888888 77 89999999999999974 4444
Q ss_pred HHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011328 321 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 321 ~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~ 400 (488)
.. ++..|...+...+.+++..++.+++.++..-.+... -+++.|.+++......+...+...+..++..
T Consensus 403 ~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~------~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~ 471 (621)
T 2vgl_A 403 QQ-----IVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYT------WYVDTILNLIRIAGDYVSEEVWYRVIQIVIN 471 (621)
T ss_dssp HH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTH------HHHHHHHHHHHHHGGGSCSHHHHHHHHHHGG
T ss_pred HH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHH------HHHHHHHHHHHhhcccchHHHHHHHHHHHhC
Confidence 43 455688888888999999999999998743211111 1366777777755544555556666666654
Q ss_pred hhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC--CHHHHHHHHHHHHHhcCC
Q 011328 401 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD--NTEIYEKAVKILETYWVE 454 (488)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~--~~~v~~~a~~~l~~~~~~ 454 (488)
.+.. +... +..+.+...++ ...+...+.|++..|-+.
T Consensus 472 ~~~~------------~~~~-----~~~l~~~l~~~~~~~~li~~~~wilGEy~~~ 510 (621)
T 2vgl_A 472 RDDV------------QGYA-----AKTVFEALQAPACHENLVKVGGYILGEFGNL 510 (621)
T ss_dssp GCSC------------HHHH-----HHHHHHHHTSSSCCHHHHHHHHHHHHHHTHH
T ss_pred ChhH------------HHHH-----HHHHHHHHcCccchHHHHHHHHHHhcchHHH
Confidence 4322 1111 22233333332 345667888999988654
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.34 E-value=6.9e-10 Score=112.45 Aligned_cols=332 Identities=13% Similarity=0.109 Sum_probs=233.6
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011328 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
+.+.+++++.+++...+..+--++..++... ++.. . =++..+.+-|++++ +.++..|+++++++.. ++...
T Consensus 75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~-~e~~---~--L~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~~ 145 (621)
T 2vgl_A 75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSN-SELI---R--LINNAIKNDLASRN-PTFMGLALHCIANVGS--REMAE 145 (621)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC-HHHH---H--HHHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHccCC-cHHH---H--HHHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHHH
Confidence 4556888999999999988888888866543 2211 1 14567777888888 9999999999999964 55444
Q ss_pred HHHhCCCHHHHHHhh--CCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328 111 VVIDHGAVPIFVRLL--SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 111 ~~~~~g~i~~L~~~L--~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 188 (488)
.+++.+.+.+ .+.++.+|..|+.++..+....|+. +...+.++.+.++| .+.++.++..|+.++..++.
T Consensus 146 -----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 146 -----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp -----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHHH
Confidence 3468888999 8899999999999999998765542 22236788888888 78899999999999999987
Q ss_pred CCCCCChhhhhchHHHHHHhhccC-------------ChhHHHHHHHHHHHhccCC-chhHHHHHHhCCHHHHHHhcC--
Q 011328 189 GKPQPLFEQTRPALPALERLIHSN-------------DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLR-- 252 (488)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~~ll~~~-------------~~~v~~~al~~L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~-- 252 (488)
..+..-.......+..+.+++..+ ++..+...+..+..++... ++....+. +.+..++..+.
T Consensus 217 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~ 294 (621)
T 2vgl_A 217 KNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEP 294 (621)
T ss_dssp HCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSC
T ss_pred hChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccC
Confidence 653211111223333444444322 5788999999999988643 23323222 23344443321
Q ss_pred -------CCC--cchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHH
Q 011328 253 -------HPS--PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 323 (488)
Q Consensus 253 -------~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 323 (488)
+.+ ..+...+..++..+.. .+.... .++..|..++.++ ++.+|..++..+..++...+. . ..
T Consensus 295 ~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~-~-~~ 365 (621)
T 2vgl_A 295 PKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS-H-EA 365 (621)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT-H-HH
T ss_pred cccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc-H-HH
Confidence 112 2677778888887753 222222 3566788888877 889999999999999885432 1 12
Q ss_pred HHcCChHHHHHHHh-cCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011328 324 IEAGIIGPLVNLLL-NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 324 ~~~~~l~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~ 400 (488)
+ ....+.++.++. ++|..++..++..|..++. ...... ++..|...+...+.+++..++.++..+...
T Consensus 366 ~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~---~~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k 434 (621)
T 2vgl_A 366 V-KTHIETVINALKTERDVSVRQRAVDLLYAMCD---RSNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAEK 434 (621)
T ss_dssp H-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC---HHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC---hhhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 2 246778888898 8899999999999999974 344444 466777777778899999999888888654
No 65
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.13 E-value=1.3e-08 Score=81.60 Aligned_cols=218 Identities=13% Similarity=0.168 Sum_probs=175.5
Q ss_pred hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCC
Q 011328 114 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP 193 (488)
Q Consensus 114 ~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 193 (488)
+..++..++.+|.++-..++.+|+..+.+++...++..+.+ +..|+.++.+++..........+++.++.-.
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~--- 101 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK--- 101 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhC---
Confidence 44678999999999999999999999999998887754443 4577778777888888788888899888654
Q ss_pred ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCC
Q 011328 194 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD 273 (488)
Q Consensus 194 ~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 273 (488)
.....+.+|.+..-.+-++++++.....+|..+...++.... +++.-+..++.+++..-+..|+..++.+....
T Consensus 102 -Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~ 175 (253)
T 2db0_A 102 -PELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS 175 (253)
T ss_dssp -HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred -HHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence 345678888888888889999999999999999988876555 55677888999988888888999988887654
Q ss_pred chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHH
Q 011328 274 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 353 (488)
Q Consensus 274 ~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~ 353 (488)
.... .-.+|.|..+|.+. +.-||..|+-+|.+++..++..+..+. .-+.-+.+.+..++...-.+|+.
T Consensus 176 ~~yv-----~PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 176 FKYV-----NPFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp HHHH-----GGGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHH
T ss_pred cccc-----CcchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHH
Confidence 4332 24789999999999 999999999999999998888554333 24455677788899999999988
Q ss_pred hccC
Q 011328 354 ATSG 357 (488)
Q Consensus 354 l~~~ 357 (488)
++.-
T Consensus 244 l~l~ 247 (253)
T 2db0_A 244 LLLL 247 (253)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8753
No 66
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.12 E-value=9e-09 Score=95.10 Aligned_cols=279 Identities=14% Similarity=0.071 Sum_probs=166.6
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
...+.++++++++|..++...--.+..++... .+.. =++..+.+=+++++ +-+|..|+++++++.. ++..
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e~i------Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~ 137 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-EDVI------IVTSSLTKDMTGKE-DSYRGPAVRALCQITD--STML 137 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SCGG------GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHHH------HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHH
Confidence 44566888999999999998888888866542 3322 25678888889999 9999999999999986 3443
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
+. +.+.+.+.+.+.++.+|..|+.+...+....|+.. + +.+..+-+++ .+.++.++.+|+.+|..+...
T Consensus 138 ~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v----~-~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 138 QA-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV----K-RWVNEAQEAA-SSDNIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp HH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----H-TTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTT
T ss_pred HH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----H-HHHHHHHHHh-cCCCccHHHHHHHHHHHHHhh
Confidence 33 35778888999999999999999999998877532 2 5788888888 778889999999999999875
Q ss_pred CCCCChhhhhchHHHHHHhhccC---ChhHHHHHHHHHHHhccCC-chhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHH
Q 011328 190 KPQPLFEQTRPALPALERLIHSN---DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265 (488)
Q Consensus 190 ~~~~~~~~~~~~~~~l~~ll~~~---~~~v~~~al~~L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~ 265 (488)
+ ...+..++..+... ++-.+...++.+..+...+ +.. ...+++.+..+|++.++.|...|+++
T Consensus 207 d--------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~-----~~~~~~~l~~~L~~~~~aVvyEa~k~ 273 (355)
T 3tjz_B 207 D--------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSR-----DSPLFDFIESCLRNKHEMVVYEAASA 273 (355)
T ss_dssp C--------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHH
T ss_pred c--------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhh-----HHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 3 22445555555442 4666666666666666544 222 23677888899999999999999999
Q ss_pred HhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHH
Q 011328 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK 345 (488)
Q Consensus 266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~ 345 (488)
+..+....... . ..++..+..++.++ ++.+|..|+..|..++...|+..+. .-..+.+++.+++..+..
T Consensus 274 I~~l~~~~~~~----~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t 342 (355)
T 3tjz_B 274 IVNLPGCSAKE----L-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIAT 342 (355)
T ss_dssp HTC----------------CCCTHHHHHHSS-SSSSHHHHHHCC------------------------------------
T ss_pred HHhccCCCHHH----H-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHH
Confidence 99886522221 1 24466777788888 8899999999999998876665432 334466778888877766
Q ss_pred HHHHHHHH
Q 011328 346 EAAWAISN 353 (488)
Q Consensus 346 ~a~~aL~~ 353 (488)
.|+.+|..
T Consensus 343 ~Aittllk 350 (355)
T 3tjz_B 343 LAITTLLK 350 (355)
T ss_dssp --------
T ss_pred HHHHHhhh
Confidence 66665544
No 67
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.11 E-value=9.8e-09 Score=105.34 Aligned_cols=275 Identities=15% Similarity=0.144 Sum_probs=195.6
Q ss_pred ccHHHHHHHhc---CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCC-------ChhHHHHHHHHHH
Q 011328 30 ESLPAMVAGVW---SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-------FPQLQFEAAWALT 99 (488)
Q Consensus 30 ~~i~~l~~~L~---s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~-------~~~v~~~a~~~L~ 99 (488)
+++..|-+.|. ++++.++.-|+..|.-+-++.. + .++..|...|.+++ .+.++..|+..|+
T Consensus 392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~----~-----~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG----R-----DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT----H-----HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc----H-----HHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34566777776 6788999999999999776542 1 14566777776543 3678999999999
Q ss_pred HhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHH
Q 011328 100 NIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNA 179 (488)
Q Consensus 100 ~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a 179 (488)
-+..++.. . .+++.|...+.+++..++..|+.+|+.+..++... + ++..|+..+..+.+..+++.+
T Consensus 463 la~~GS~~--e-----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-~------ai~~LL~~~~e~~~e~vrR~a 528 (963)
T 4ady_A 463 LAAMGSAN--I-----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-E------AIHDMFTYSQETQHGNITRGL 528 (963)
T ss_dssp HHSTTCCC--H-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-H------HHHHHHHHHHHCSCHHHHHHH
T ss_pred HHhcCCCC--H-----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-H------HHHHHHHHHhccCcHHHHHHH
Confidence 98764421 1 24677888888877888889999999875443321 1 345666666556678899999
Q ss_pred HHHHHHhhcCCCCCChhhhhchHHHHHHhhc-cCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHh-cCCCCcc
Q 011328 180 TWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LRHPSPS 257 (488)
Q Consensus 180 ~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~ 257 (488)
+.+|..+..+. ...++.+++.|. +.++.++..++.+++.-.....+. ..++.|+.. ..+.++.
T Consensus 529 algLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~ 593 (963)
T 4ady_A 529 AVGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDD 593 (963)
T ss_dssp HHHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHH
T ss_pred HHHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHH
Confidence 99999887654 345667777776 468888888888877544433322 223434433 3456778
Q ss_pred hHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 011328 258 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 337 (488)
Q Consensus 258 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~ 337 (488)
+|..|+..|+.+..+++ ..++.++.+|.+..++.+|..+.++++.++.+++.. .++..|..+.+
T Consensus 594 VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~~ 657 (963)
T 4ady_A 594 VRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLTK 657 (963)
T ss_dssp HHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHHT
T ss_pred HHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHcc
Confidence 99999999999887665 235566665554449999999999999998854421 25667788888
Q ss_pred cCChhHHHHHHHHHHHhccCC
Q 011328 338 NAEFEIKKEAAWAISNATSGG 358 (488)
Q Consensus 338 ~~~~~v~~~a~~aL~~l~~~~ 358 (488)
+.+..|+..|+.+|+.+....
T Consensus 658 D~d~~Vrq~Ai~ALG~Ig~gt 678 (963)
T 4ady_A 658 DPVDFVRQAAMIALSMILIQQ 678 (963)
T ss_dssp CSSHHHHHHHHHHHHHHSTTC
T ss_pred CCCHHHHHHHHHHHHHHhcCC
Confidence 899999999999999998654
No 68
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=99.03 E-value=1.9e-08 Score=84.33 Aligned_cols=226 Identities=18% Similarity=0.186 Sum_probs=171.1
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhH
Q 011328 199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ 278 (488)
Q Consensus 199 ~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 278 (488)
.+.+..+.++++..|+.++..++.+|..+....++......-..+++.++.++.++++.+...|++++..+..+.+-...
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 45777899999999999999999999999977544444444448899999999999999999999999999987664333
Q ss_pred HHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCC
Q 011328 279 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 358 (488)
Q Consensus 279 ~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 358 (488)
.+. .+...+.+++.++ ++-++.+++-.++-+--.+.. .+++..+.+++.+.+..++..++.++.+++...
T Consensus 112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 332 3567788899988 899999999999988432211 126777888998899999999999999998644
Q ss_pred -CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhh-cCC
Q 011328 359 -SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHD 436 (488)
Q Consensus 359 -~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~-~~~ 436 (488)
+++.. .+++.-+-.++++.|+.+++.|+.++..++.+.-.. |..-+.. +.......+. -..
T Consensus 182 ~D~~i~-----~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~---------~~~~~~~---~~~~~v~~l~~~~~ 244 (265)
T 3b2a_A 182 ADSGHL-----TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLE---------NVKIELL---KISRIVDGLVYREG 244 (265)
T ss_dssp SSCCCG-----GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCS---------CCHHHHH---HHHHHHHHGGGCSS
T ss_pred CCHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccH---------hHHHHHH---HHHHHHHHHHHhcC
Confidence 22211 256788888999999999999999999998763221 1122222 2345556665 567
Q ss_pred CHHHHHHHHHHHHHh
Q 011328 437 NTEIYEKAVKILETY 451 (488)
Q Consensus 437 ~~~v~~~a~~~l~~~ 451 (488)
.|.++.+|..+.+.+
T Consensus 245 ~~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 245 APIIRLKAKKVSDLI 259 (265)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHH
Confidence 789999988876654
No 69
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.00 E-value=5.1e-09 Score=107.48 Aligned_cols=220 Identities=15% Similarity=0.123 Sum_probs=155.0
Q ss_pred HHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHH-HhhCCCCHHHHHHHHHHHhhhhCC-
Q 011328 69 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGD- 146 (488)
Q Consensus 69 ~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~~L~~~~~~v~~~a~~~L~~l~~~- 146 (488)
..+..++| +++.|++++ ++.|..|+.+|++++. ++..+..+...+++..++ .+|.+++.++|..|+++|.||+.+
T Consensus 31 ~~~~~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 31 LREDKILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp HHHHTTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred cchhhHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 33445555 557789999 8999999999999998 889999999888887765 578889999999999999999865
Q ss_pred CchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHH
Q 011328 147 SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSY 226 (488)
Q Consensus 147 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~ 226 (488)
.+.....+.+.|++++|..++.+ .. ..+........... ......+ ..+...++.+|.+
T Consensus 108 g~d~~~~l~~~~il~~L~~~l~~-~~--------~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~l~lL~~ 166 (684)
T 4gmo_A 108 EADFCVHLYRLDVLTAIEHAAKA-VL--------ETLTTSEPPFSKLL-KAQQRLV-----------WDITGSLLVLIGL 166 (684)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHH-HH--------HHHHCBTTBGGGSC-HHHHHHH-----------HHHHHHHHHHHHH
T ss_pred CchHHHHHHHcChHHHHHHHHHh-hH--------HHHhhhcccccccc-HHHHHHH-----------HHHHHHHHHHHHH
Confidence 35667788899999999998832 11 11222111100000 0001111 2344567778888
Q ss_pred hccCCchhHHHHHHhCCHHHHHHhcCC---CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHh--cccchhhH
Q 011328 227 LSDGTNDKIQAVIEAGVCPRLVELLRH---PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL--TQNYKKSI 301 (488)
Q Consensus 227 l~~~~~~~~~~~~~~~~l~~L~~lL~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL--~~~~~~~v 301 (488)
++..+++....+...+.++.++..|.+ ...+++..|+.+|..++..++...+.+.+.+....+..++ ... +...
T Consensus 167 L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~ 245 (684)
T 4gmo_A 167 LALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPR 245 (684)
T ss_dssp HHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTT
T ss_pred HHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHH
Confidence 887777777778888889999888844 2357999999999999999988888777765443332222 223 3445
Q ss_pred HHHHHHHHHHHh
Q 011328 302 KKEACWTISNIT 313 (488)
Q Consensus 302 ~~~a~~~L~nl~ 313 (488)
+..+++++.|+.
T Consensus 246 ~~la~giL~Ni~ 257 (684)
T 4gmo_A 246 AVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhHh
Confidence 778888888874
No 70
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.96 E-value=1.4e-07 Score=75.66 Aligned_cols=216 Identities=17% Similarity=0.214 Sum_probs=168.6
Q ss_pred HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHhhhhCCCch
Q 011328 71 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPK 149 (488)
Q Consensus 71 ~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~-~~~~~v~~~a~~~L~~l~~~~~~ 149 (488)
+..++..++++|.++-| .++..|+.++..++...++....+ +..|+.+++ ++...+.....++++.++...|+
T Consensus 30 d~~~l~~lI~~LDDDlw-tV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 30 DESVLKKLIELLDDDLW-TVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp CHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHhccHHH-HHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence 45688999999998884 899999999999999878776655 455666654 56677777788999999877765
Q ss_pred hHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 011328 150 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 229 (488)
Q Consensus 150 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~ 229 (488)
.-+ +.++.+..-. .-.++.++.+..++|..+....| ....+++.-+..++.++|..=+..++..++.+..
T Consensus 104 ~v~-----~vVp~lfany-rigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 104 LVK-----SMIPVLFANY-RIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp HHH-----HHHHHHHHHS-CCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred HHH-----hhHHHHHHHH-hcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 322 2455666655 44599999999999999987653 4557788888999999998888889999988887
Q ss_pred CCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHH
Q 011328 230 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 309 (488)
Q Consensus 230 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L 309 (488)
+...... ..++.|..+|.+.+.-+|..|..+|.+++..++..+.. +...+.-+++. +..++...-.+|
T Consensus 174 n~~~yv~-----PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~-S~lv~~~V~egL 241 (253)
T 2db0_A 174 NSFKYVN-----PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDT-SSLVNKTVKEGI 241 (253)
T ss_dssp TTHHHHG-----GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCS-CHHHHHHHHHHH
T ss_pred cCccccC-----cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCc-HHHHHHHHHHHH
Confidence 6653322 78899999999999999999999999999988875543 33456666777 777887777777
Q ss_pred HHHhc
Q 011328 310 SNITA 314 (488)
Q Consensus 310 ~nl~~ 314 (488)
+.+..
T Consensus 242 ~rl~l 246 (253)
T 2db0_A 242 SRLLL 246 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77664
No 71
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.90 E-value=1.5e-07 Score=78.94 Aligned_cols=189 Identities=15% Similarity=0.149 Sum_probs=153.8
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328 29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
-+.+..++++|..+|+.++.+++.+|.++++.. +...+...-..+++.+++++.+.+ +.+...|++|+..+..+.|-.
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~ 109 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPMG 109 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBC
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCC
Confidence 467888999999999999999999999999875 345555555679999999999999 999999999999999977655
Q ss_pred hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328 109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 188 (488)
.+.+.. ++.++...+.++++-++..++..++.+---.+ ... .+..+..++ .+.|..++..++.++.+++.
T Consensus 110 ~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~--~~~-----V~~~l~sLl-~Skd~~vK~agl~~L~eia~ 179 (265)
T 3b2a_A 110 SKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED--SKL-----VRTYINELV-VSPDLYTKVAGFCLFLNMLN 179 (265)
T ss_dssp HHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC--CHH-----HHHHHHHHH-TCSSHHHHHHHHHHHHHHGG
T ss_pred HHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc--hHH-----HHHHHHHHH-hCCChhHHHHHHHHHHHhhc
Confidence 555543 46889999999999999999999999932221 112 356778888 89999999999999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011328 189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 231 (488)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 231 (488)
.... ......++.-+-.++++.|+.++..|+.++-.+...+
T Consensus 180 ~S~D--~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 180 SSAD--SGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp GCSS--CCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred ccCC--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 6522 2234566667788999999999999999999988654
No 72
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.88 E-value=2.8e-08 Score=91.76 Aligned_cols=241 Identities=14% Similarity=0.097 Sum_probs=138.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHH
Q 011328 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 111 (488)
Q Consensus 32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 111 (488)
.+.+.+.++++++-++-.|++.|+++... +..+ .+.+.+.+.|.+.+ +.||..|+.+...+....|+...
T Consensus 106 ~Nsl~kDl~~~N~~iR~lALRtL~~I~~~---~m~~-----~l~~~lk~~L~d~~-pyVRk~A~l~~~kL~~~~pe~v~- 175 (355)
T 3tjz_B 106 TSSLTKDMTGKEDSYRGPAVRALCQITDS---TMLQ-----AIERYMKQAIVDKV-PSVSSSALVSSLHLLKCSFDVVK- 175 (355)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCT---TTHH-----HHHHHHHHHHTCSS-HHHHHHHHHHHHHHTTTCHHHHH-
T ss_pred HHHHHhhcCCCcHhHHHHHHHHHhcCCCH---HHHH-----HHHHHHHHHcCCCC-HHHHHHHHHHHHHHhccCHHHHH-
Confidence 66889999999999999999999998653 3233 35667888999999 99999999999999987776543
Q ss_pred HHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc--cHhHHHHHHHHHHHhhcC
Q 011328 112 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 112 ~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~--~~~v~~~a~~~L~~l~~~ 189 (488)
++++.+..++.+.++-++.+|+.++..+...+.. .+..++..+.+.. ++-.+...+..+..++..
T Consensus 176 ----~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~ 242 (355)
T 3tjz_B 176 ----RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLED 242 (355)
T ss_dssp ----TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---
T ss_pred ----HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccc
Confidence 5789999999999999999999999999875431 3445566553321 343344444444343332
Q ss_pred CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011328 190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 269 (488)
Q Consensus 190 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l 269 (488)
+ ........++.+...+++.++.|...|++++..+...... .. ..++..+..++.++++.+|..|+..|..+
T Consensus 243 d---~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l 314 (355)
T 3tjz_B 243 E---DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKV 314 (355)
T ss_dssp -----------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC---
T ss_pred c---chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 2 1123356777888888999999999999999998653321 11 24567777788889999999999999999
Q ss_pred hcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHH
Q 011328 270 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 309 (488)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L 309 (488)
+...+.... ..-.-+.+++.++ +..+...|..+|
T Consensus 315 ~~~~P~~v~-----~~n~~ie~li~d~-n~sI~t~Aittl 348 (355)
T 3tjz_B 315 AMKHPSAVT-----ACNLDLENLVTDA-NRSIATLAITTL 348 (355)
T ss_dssp ----------------------------------------
T ss_pred HHHCcHHHH-----HHHHHHHHHccCC-cHhHHHHHHHHh
Confidence 987765443 2344577788887 776666655544
No 73
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.88 E-value=4.5e-07 Score=93.21 Aligned_cols=271 Identities=13% Similarity=0.130 Sum_probs=186.9
Q ss_pred CCHHHHHHhhc---CCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCC--------HHHHHHHHHHHh
Q 011328 73 GVVPRFIEFLS---RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT--------DDVREQAVWALG 141 (488)
Q Consensus 73 ~~i~~L~~lL~---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~--------~~v~~~a~~~L~ 141 (488)
+++..|-+.|. +++ +.++..|+.+|+-+..+... .++..|...+.+++ +.++..|+..|+
T Consensus 392 ~gl~~L~~yL~~~~s~~-~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 392 EGKKVMAPYLPGSRASS-RFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp THHHHHTTTSTTSCCSC-HHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCc-HHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34666666776 445 88999999999999885432 14677777776544 778989999999
Q ss_pred hhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh-ccCChhHHHHH
Q 011328 142 NVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVLTDA 220 (488)
Q Consensus 142 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll-~~~~~~v~~~a 220 (488)
.+..++.. +. ++..|...+ .+.+..++..++.+|..+.-+..+ ..++..|+..+ .+.+..++..+
T Consensus 463 la~~GS~~--ee-----v~e~L~~~L-~dd~~~~~~~AalALGli~vGTgn------~~ai~~LL~~~~e~~~e~vrR~a 528 (963)
T 4ady_A 463 LAAMGSAN--IE-----VYEALKEVL-YNDSATSGEAAALGMGLCMLGTGK------PEAIHDMFTYSQETQHGNITRGL 528 (963)
T ss_dssp HHSTTCCC--HH-----HHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHCSCHHHHHHH
T ss_pred HHhcCCCC--HH-----HHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccCC------HHHHHHHHHHHhccCcHHHHHHH
Confidence 97654431 12 345677777 444445666788888766443211 23455555554 34578899999
Q ss_pred HHHHHHhccCCchhHHHHHHhCCHHHHHHhcC-CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchh
Q 011328 221 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK 299 (488)
Q Consensus 221 l~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~ 299 (488)
+.+|+.+....++.. +.+++.|. +.++.+|..++.+++.-..+.... ..++.|+..+.+..+.
T Consensus 529 algLGll~~g~~e~~---------~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d 592 (963)
T 4ady_A 529 AVGLALINYGRQELA---------DDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSND 592 (963)
T ss_dssp HHHHHHHTTTCGGGG---------HHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCH
T ss_pred HHHHHhhhCCChHHH---------HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcH
Confidence 999998876665443 44444543 467888988888887655544432 2345556655444378
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH-hcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhh
Q 011328 300 SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL-LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL 378 (488)
Q Consensus 300 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~l 378 (488)
.+|..|+.+|+.+..++++ .++.++..+ ++.++.+|..|+.+|+.+....... .+++.|..+
T Consensus 593 ~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~--------~aid~L~~L 655 (963)
T 4ady_A 593 DVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--------SAIDVLDPL 655 (963)
T ss_dssp HHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH--------HHHHHHHHH
Confidence 8999999999998876543 456666644 4569999999999999997543211 246777888
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q 011328 379 LNCPDPRIVTVCLEGLENILK 399 (488)
Q Consensus 379 l~~~~~~v~~~al~~L~~l~~ 399 (488)
.++++..|+..|+.+|..+..
T Consensus 656 ~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 656 TKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp HTCSSHHHHHHHHHHHHHHST
T ss_pred ccCCCHHHHHHHHHHHHHHhc
Confidence 899999999999999997754
No 74
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.87 E-value=1.7e-08 Score=89.78 Aligned_cols=187 Identities=14% Similarity=0.218 Sum_probs=144.5
Q ss_pred HHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-cCChhHHHHHHHHHHHhccCCchhHHHHH
Q 011328 161 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVI 239 (488)
Q Consensus 161 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~ 239 (488)
+.+.+.+ .+.+...|..++..|..+....+.........+++.+...+. +.+..++..++.+++.++..-........
T Consensus 18 ~~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3466777 778899999999999999876322111223578888999995 88999999999999999965433333333
Q ss_pred HhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHH
Q 011328 240 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVN 318 (488)
Q Consensus 240 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~ 318 (488)
. .+++.++..+.++++.+|..+..++..++.... .. .+++.+...+++. ++.+|..++..+..+... .++
T Consensus 97 ~-~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 97 S-ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp H-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGG
T ss_pred H-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCC
Confidence 3 678999999999999999999999999987433 11 3678889999998 999999999999997653 233
Q ss_pred H-HHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCC
Q 011328 319 Q-IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 358 (488)
Q Consensus 319 ~-~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 358 (488)
. ....+. .++|.|..++.+.++++|..|..+++.++..-
T Consensus 168 ~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 168 ALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp GCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 1 122222 48999999999999999999999999998543
No 75
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.87 E-value=8.4e-07 Score=83.79 Aligned_cols=323 Identities=12% Similarity=0.123 Sum_probs=197.4
Q ss_pred hCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCc---hhHHHHHhcCCh-HHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328 114 DHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSP---KCRDLVLSNGAL-MPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 114 ~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~l-~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 188 (488)
+......++.+|.. .+.++.+..+..+..+..+++ .....+.+.... ..+........+.-....++.++..++.
T Consensus 75 ~~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~ 154 (480)
T 1ho8_A 75 NGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQ 154 (480)
T ss_dssp SSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTS
T ss_pred CchHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 34567888888875 789999999999999988776 333333333222 2233322233344455666666666654
Q ss_pred CCCCCChhhhhchHH--HHHHhhccC-ChhHHHHHHHHHHHhccCCchhHHHHHHh--CCHHHHHHhcC----CC-----
Q 011328 189 GKPQPLFEQTRPALP--ALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEA--GVCPRLVELLR----HP----- 254 (488)
Q Consensus 189 ~~~~~~~~~~~~~~~--~l~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~--~~l~~L~~lL~----~~----- 254 (488)
..+. .......++. .+...+++. +...+..++.++..+...... ...+.+. ..++.++.++. +.
T Consensus 155 ~~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~-R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~ 232 (480)
T 1ho8_A 155 NGLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEY-RDVIWLHEKKFMPTLFKILQRATDSQLATRI 232 (480)
T ss_dssp TTTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHH-HHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred cCCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhH-HHHHHHcccchhHHHHHHHHHhhcccccccc
Confidence 4322 2233344444 455556553 445566788888888776543 3445443 23555544322 11
Q ss_pred --------CcchHhHHHHHHhHhhcCCchhhHHHhhCCCh--HHHHHHhcccchhhHHHHHHHHHHHHhcCCH----HHH
Q 011328 255 --------SPSVLIPALRTVGNIVTGDDMQTQCIINHQAL--PCLLDLLTQNYKKSIKKEACWTISNITAGNV----NQI 320 (488)
Q Consensus 255 --------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~--~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~----~~~ 320 (488)
..+++..++.+++.++... .....+...++. ..++.+++....+++-+-++.++.|+....+ ...
T Consensus 233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF~~-~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~ 311 (480)
T 1ho8_A 233 VATNSNHLGIQLQYHSLLLIWLLTFNP-VFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVI 311 (480)
T ss_dssp ------CCHHHHHHHHHHHHHHHTTSH-HHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred ccccCCCccHHHHHHHHHHHHHHHcCH-HHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHH
Confidence 2456788999999998844 455555555543 5677778776578899999999999998542 222
Q ss_pred HH-HHHcCChHHHHHHHhcC---ChhHHHHHHHHHHHhcc---CCC--HHHHH------------------------HHH
Q 011328 321 QA-IIEAGIIGPLVNLLLNA---EFEIKKEAAWAISNATS---GGS--NEQIK------------------------FLV 367 (488)
Q Consensus 321 ~~-l~~~~~l~~L~~ll~~~---~~~v~~~a~~aL~~l~~---~~~--~~~~~------------------------~l~ 367 (488)
.. ++..++ +.++..|... |+++....-.....+-. .-+ .+... .+.
T Consensus 312 ~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~ 390 (480)
T 1ho8_A 312 KQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFK 390 (480)
T ss_dssp HHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGS
T ss_pred HHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHH
Confidence 32 333344 4456666543 66554332222222210 000 01111 111
Q ss_pred HC--CChHHHHhhcCC----------CCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC
Q 011328 368 SQ--GCIKPLCDLLNC----------PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH 435 (488)
Q Consensus 368 ~~--~~i~~L~~ll~~----------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~ 435 (488)
++ .++..|.++|++ .|+.+...|+.=++.+++.-+. .+..+.+.|+-+.+.+|+++
T Consensus 391 e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~------------gr~i~~~lg~K~~VM~Lm~h 458 (480)
T 1ho8_A 391 KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE------------SIDVLDKTGGKADIMELLNH 458 (480)
T ss_dssp SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT------------HHHHHHHHSHHHHHHHHTSC
T ss_pred hcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcc------------hhHHHHHcCcHHHHHHHhcC
Confidence 11 346788888873 3677788888888888887664 37788899999999999999
Q ss_pred CCHHHHHHHHHHHHHhc
Q 011328 436 DNTEIYEKAVKILETYW 452 (488)
Q Consensus 436 ~~~~v~~~a~~~l~~~~ 452 (488)
+|++|+..|..++.++.
T Consensus 459 ~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 459 SDSRVKYEALKATQAII 475 (480)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999887653
No 76
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.84 E-value=1.5e-08 Score=103.94 Aligned_cols=196 Identities=13% Similarity=0.079 Sum_probs=148.1
Q ss_pred chHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHH-HHhcCCCCcchHhHHHHHHhHhhcCC-chhh
Q 011328 200 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL-VELLRHPSPSVLIPALRTVGNIVTGD-DMQT 277 (488)
Q Consensus 200 ~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L-~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~ 277 (488)
.++| +++.|+++++..+..|+++|.+++.+ +...+.+...+++..+ ..+|.+++.++|..|+++|.||+... ....
T Consensus 35 ~i~P-ll~~L~S~~~~~r~~A~~al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 35 KILP-VLKDLKSPDAKSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp TTHH-HHHHHSSSCCSHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hHHH-HHHHcCCCCHHHHHHHHHHHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 4455 55678999999999999999999974 4555667777888765 56788899999999999999999753 4566
Q ss_pred HHHhhCCChHHHHHHhcccch--------------------hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 011328 278 QCIINHQALPCLLDLLTQNYK--------------------KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 337 (488)
Q Consensus 278 ~~~~~~~~~~~L~~lL~~~~~--------------------~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~ 337 (488)
..++..++++.|..++..... ..+...++.+|.+++.++.+....+...+.++.|+..+.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 778899999999998854210 123346778889999888888888888899999999886
Q ss_pred cC---ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHH---HHhhcCCCCHHHHHHHHHHHHHHHH
Q 011328 338 NA---EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKP---LCDLLNCPDPRIVTVCLEGLENILK 399 (488)
Q Consensus 338 ~~---~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~---L~~ll~~~~~~v~~~al~~L~~l~~ 399 (488)
+. ..+++..|+.+|..++.. +.+....+.+.+.... +..+.++.+ ..+..++..|.|++.
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~d-n~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSED-NLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHNVFT 258 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhcc-CHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHhHhh
Confidence 53 357999999999999875 4577777777665433 333333333 345667788888764
No 77
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.77 E-value=2.4e-08 Score=88.75 Aligned_cols=186 Identities=14% Similarity=0.185 Sum_probs=141.0
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhh
Q 011328 119 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 198 (488)
Q Consensus 119 ~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 198 (488)
+.+.+.+++.+...|..++..|..++...+....... ...++.+...+.++.+..++..++.++..++..-...-....
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4577788899999999999999999765222110000 123556666663378889999999999999965422223455
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCC-ch-h
Q 011328 199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD-DM-Q 276 (488)
Q Consensus 199 ~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~-~ 276 (488)
..++|.++..+.+.+..++..+..++..++...+ .. .+++.+...+.+.++.+|..++..|+.+.... +. .
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 7789999999999999999999999999987543 12 46788889999999999999999999965543 32 1
Q ss_pred hHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011328 277 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 314 (488)
Q Consensus 277 ~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 314 (488)
....+. .+++.+...+.++ ++++|..|..+++.++.
T Consensus 170 ~~~~l~-~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 170 NKKLLK-LLTTSLVKTLNEP-DPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CHHHHH-HHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred cHHHHH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence 222333 6889999999988 99999999999999986
No 78
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.73 E-value=8.9e-08 Score=85.05 Aligned_cols=191 Identities=10% Similarity=0.085 Sum_probs=141.7
Q ss_pred HHHHhcccccHhHHHHHHHHHHH-hhcCCCCCC--hhhhhchHHHHHHhh-ccCChhHHHHHHHHHHHhccCCc-hhHH-
Q 011328 163 LLAQFNEHAKLSMLRNATWTLSN-FCRGKPQPL--FEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTN-DKIQ- 236 (488)
Q Consensus 163 L~~ll~~~~~~~v~~~a~~~L~~-l~~~~~~~~--~~~~~~~~~~l~~ll-~~~~~~v~~~al~~L~~l~~~~~-~~~~- 236 (488)
+...+ .+.+..-|..++..|.. ++.+.+... ......++..+.+.+ .+.+..++..++.+++.++..-. ....
T Consensus 21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 34455 67888999999999999 876532222 222356788889999 68899999999999999985432 2222
Q ss_pred HHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC
Q 011328 237 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 316 (488)
Q Consensus 237 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 316 (488)
.... .+++.++..+.+..+.++..+..++..++...+.....-.-..+++.+...|+++ ++.+|..++.+|..++...
T Consensus 100 ~y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHc
Confidence 2332 4789999999998899999999998888874422111000013677888999999 9999999999999998733
Q ss_pred H---HHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011328 317 V---NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 317 ~---~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
+ ......+...++|.|..++.+.+.+||..|..+++.++.
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3 444444424699999999999999999999999999874
No 79
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.73 E-value=1.2e-07 Score=84.16 Aligned_cols=190 Identities=12% Similarity=0.168 Sum_probs=140.2
Q ss_pred HHHhhcCCCChhHHHHHHHHHHH-hcCCCchhhHHHHh-CCCHHHHHHhh-CCCCHHHHHHHHHHHhhhhCCC--chhH-
Q 011328 78 FIEFLSRDDFPQLQFEAAWALTN-IASGTSENTRVVID-HGAVPIFVRLL-SSPTDDVREQAVWALGNVAGDS--PKCR- 151 (488)
Q Consensus 78 L~~lL~~~~~~~v~~~a~~~L~~-l~~~~~~~~~~~~~-~g~i~~L~~~L-~~~~~~v~~~a~~~L~~l~~~~--~~~~- 151 (488)
+.+.+++.+ -..|..|+..|.. ++.+.++....-.+ ..++..|.+.+ .+.+..++..|+.+++.++.+- +.+.
T Consensus 21 f~~~l~s~~-w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERITSSK-WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHHTCSS-HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHhhcCC-HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 445668888 6889999999999 87544432200001 13467788888 6789999999999999998432 2232
Q ss_pred HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCCh-hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 011328 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF-EQTRPALPALERLIHSNDDEVLTDACWALSYLSDG 230 (488)
Q Consensus 152 ~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~ 230 (488)
.... ..++.++..+ .+....++..+..++..++...+.... .....+++.+...+++.++.++..++.+|..++..
T Consensus 100 ~y~~--~llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 100 DYVS--LVFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHHH--HHHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 2322 2578888888 667788999999999998875422111 12567899999999999999999999999999865
Q ss_pred Cc---hhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011328 231 TN---DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 271 (488)
Q Consensus 231 ~~---~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 271 (488)
.. ......+...+++.+.+++.+.++.+|..|..+++.++.
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 44 222333424889999999999999999999999999875
No 80
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.61 E-value=4.4e-06 Score=87.04 Aligned_cols=303 Identities=12% Similarity=0.147 Sum_probs=212.6
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC---c
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT---S 106 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~---~ 106 (488)
..+..+++.+...+..-+..++..+..+..+..... .+..+++..+.+.+.+.. .. +.|+.++..++... +
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~ 87 (986)
T 2iw3_A 14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIEH---DVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSP 87 (986)
T ss_dssp HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS---SCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCT
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCC
Confidence 445567777776556666788888888776431111 111367888888888776 33 99999999999533 1
Q ss_pred hhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHh
Q 011328 107 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 186 (488)
Q Consensus 107 ~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l 186 (488)
..-..++ +.++.++..+.+....+|..|-.++..++..-+...- ...++.++..+........+..|+.++..+
T Consensus 88 ~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~ 161 (986)
T 2iw3_A 88 SVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAM 161 (986)
T ss_dssp TTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 2222233 5789999998888899999998888887654332211 235788888885555788999999999999
Q ss_pred hcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc-hhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHH
Q 011328 187 CRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265 (488)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~ 265 (488)
+...+.........++|.+...+.+..++|...+..++..+|..-+ ..++ ..++.|++.+.+++. ...++..
T Consensus 162 ~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~-----~~~~~~~~~~~~p~~--~~~~~~~ 234 (986)
T 2iw3_A 162 VDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE-----RFIPSLIQCIADPTE--VPETVHL 234 (986)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG-----GGHHHHHHHHHCTTH--HHHHHHH
T ss_pred HHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh-----hhHHHHHHHhcChhh--hHHHHHH
Confidence 9765444444567889999999999999999999999988885322 1122 678999999988743 4455666
Q ss_pred HhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc--CCHHHHHHHHHcCChHHHHHHHhcC-Chh
Q 011328 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAIIEAGIIGPLVNLLLNA-EFE 342 (488)
Q Consensus 266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~l~~L~~ll~~~-~~~ 342 (488)
|+.-+.-..... ..+ +=..|.|.+-|... ...+++.++-++.|++. .++.....++. .++|.+-+....- +|+
T Consensus 235 l~~~tfv~~v~~-~~l-~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe 310 (986)
T 2iw3_A 235 LGATTFVAEVTP-ATL-SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPE 310 (986)
T ss_dssp HTTCCCCSCCCH-HHH-HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHH
T ss_pred hhcCeeEeeecc-hhH-HHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHH
Confidence 655443222111 111 12456677777777 78899999999999998 67777766665 5888888777664 899
Q ss_pred HHHHHHHHHHHhc
Q 011328 343 IKKEAAWAISNAT 355 (488)
Q Consensus 343 v~~~a~~aL~~l~ 355 (488)
+|+.|..|+..|.
T Consensus 311 ~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 311 AREVTLRALKTLR 323 (986)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888888874
No 81
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.59 E-value=1.1e-05 Score=86.72 Aligned_cols=389 Identities=9% Similarity=0.051 Sum_probs=219.2
Q ss_pred ccHHHHHHHhcC--CCHHHHHHHHHHHHHHhccCC---------CccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHH
Q 011328 30 ESLPAMVAGVWS--DDRNIQLDATTQFRKLLSIER---------SPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWAL 98 (488)
Q Consensus 30 ~~i~~l~~~L~s--~~~~~~~~a~~~L~~l~~~~~---------~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L 98 (488)
+....|+..+.+ .+..+|..|+..|.+.+...- ++..+..++. .+++.+.++. ..+|..++.++
T Consensus 35 ~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~----~ll~~l~~~~-~~ir~~l~~~i 109 (960)
T 1wa5_C 35 GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKK----EIVPLMISLP-NNLQVQIGEAI 109 (960)
T ss_dssp THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHH----HHHHHHHHSC-HHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHH----HHHHHHHhCC-HHHHHHHHHHH
Confidence 445567777754 467899999999999876421 1112333333 3444444556 79999999999
Q ss_pred HHhcCC-CchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc------hhHHHHH--hcCChHHHHHH---
Q 011328 99 TNIASG-TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP------KCRDLVL--SNGALMPLLAQ--- 166 (488)
Q Consensus 99 ~~l~~~-~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~------~~~~~~~--~~~~l~~L~~l--- 166 (488)
+.++.. .++.. .+.++.|+..++++++..+..++.++..++.... +.+..+. -....++++.+
T Consensus 110 a~ia~~d~p~~W-----p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~ 184 (960)
T 1wa5_C 110 SSIADSDFPDRW-----PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKT 184 (960)
T ss_dssp HHHHHHHSTTTC-----TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCccch-----hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999872 12111 3578999999988888899999999999986321 1111110 01123333332
Q ss_pred ----hcccc-c-------HhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccC------C---------hhHHH
Q 011328 167 ----FNEHA-K-------LSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN------D---------DEVLT 218 (488)
Q Consensus 167 ----l~~~~-~-------~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~------~---------~~v~~ 218 (488)
+.... + ..+...++.++..+.... +..........++.+..++... + ..++.
T Consensus 185 ~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~ 264 (960)
T 1wa5_C 185 VDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKS 264 (960)
T ss_dssp HHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHH
Confidence 32211 1 123334666666655432 2111112244556666666421 1 24677
Q ss_pred HHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC-----CCCcchHhHHHHHHhHhhcCCchhhHHHhh-CCChHH----
Q 011328 219 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-----HPSPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPC---- 288 (488)
Q Consensus 219 ~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~---- 288 (488)
.++.++..+....++.....+. .+++.....+. ..++.++..++..+..++.... .. .+++ ...++.
T Consensus 265 ~~~~~l~~l~~~~~~~f~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~-~~-~~~~~~~~l~~li~~ 341 (960)
T 1wa5_C 265 SIQELVQLYTTRYEDVFGPMIN-EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPK-YF-EIFNNESAMNNITEQ 341 (960)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHH-HH-GGGCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHh-HH-HHHcCchHHHHHHHH
Confidence 8888888887655443332222 44555555553 2456788888888888775322 11 1111 122222
Q ss_pred -HHHHhcc----------------------cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh------cC
Q 011328 289 -LLDLLTQ----------------------NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL------NA 339 (488)
Q Consensus 289 -L~~lL~~----------------------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~------~~ 339 (488)
++..+.- ......|..|..+|..++...++.. +. .+++.+...+. +.
T Consensus 342 ~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v---~~-~~l~~i~~~l~~~~~~~~~ 417 (960)
T 1wa5_C 342 IILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV---TN-IFLAHMKGFVDQYMSDPSK 417 (960)
T ss_dssp THHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH---HH-HHHHHHHHHHHHHHC----
T ss_pred HhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhH---HH-HHHHHHHHHHHHhccCcch
Confidence 2233210 1022567788888888877433322 11 13344444454 45
Q ss_pred ChhHHHHHHHHHHHhccCCC-HH----------HHHHHHHCCChHHHHhhcCCC---CHHHHHHHHHHHHHHHHhhhhhh
Q 011328 340 EFEIKKEAAWAISNATSGGS-NE----------QIKFLVSQGCIKPLCDLLNCP---DPRIVTVCLEGLENILKAGEAEK 405 (488)
Q Consensus 340 ~~~v~~~a~~aL~~l~~~~~-~~----------~~~~l~~~~~i~~L~~ll~~~---~~~v~~~al~~L~~l~~~~~~~~ 405 (488)
++..|+.|+.+++.++..+. .+ ....+...-+++ .+.++ ++.++..++++++++...-.
T Consensus 418 ~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p----~l~~~~~~~p~vr~~a~~~lg~~~~~~~--- 490 (960)
T 1wa5_C 418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP----DLTSNNIPHIILRVDAIKYIYTFRNQLT--- 490 (960)
T ss_dssp CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH----HHHCSSCSCHHHHHHHHHHHHHTGGGSC---
T ss_pred hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHH----HhcCCCCCCceehHHHHHHHHHHHhhCC---
Confidence 77899999999999975421 00 111111111222 23444 78999999999998865421
Q ss_pred ccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 011328 406 NMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEE 455 (488)
Q Consensus 406 ~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 455 (488)
.+.+.. .++.+...+.++++.|+..|...+.++.+..
T Consensus 491 -----------~~~l~~--~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~ 527 (960)
T 1wa5_C 491 -----------KAQLIE--LMPILATFLQTDEYVVYTYAAITIEKILTIR 527 (960)
T ss_dssp -----------HHHHHH--HHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred -----------HHHHHH--HHHHHHHHhCCCChhHHHHHHHHHHHHHhcc
Confidence 112221 2455666667778999999999999998753
No 82
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.55 E-value=2.1e-05 Score=84.35 Aligned_cols=344 Identities=10% Similarity=0.038 Sum_probs=198.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC------ch
Q 011328 34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT------SE 107 (488)
Q Consensus 34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~------~~ 107 (488)
.+++.+.+++..++...+.++..++..+-+. -..++++.|++++++++ +..+..++.++..++... ++
T Consensus 89 ~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~-----~Wp~ll~~L~~~l~s~~-~~~~~~aL~~l~~i~~~~~~~~~~~~ 162 (960)
T 1wa5_C 89 EIVPLMISLPNNLQVQIGEAISSIADSDFPD-----RWPTLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRPLFRSDE 162 (960)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHSTT-----TCTTHHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTTSCCCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhhCcc-----chhHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhcChH
Confidence 5677777677889999999999988753111 12468899999998887 788999999999998722 12
Q ss_pred hhHHHH--hCCCHHHHHH-------hhCCCCH---------HHHHHHHHHHhhhhC-CCchhH-HHHHhcCChHHHHHHh
Q 011328 108 NTRVVI--DHGAVPIFVR-------LLSSPTD---------DVREQAVWALGNVAG-DSPKCR-DLVLSNGALMPLLAQF 167 (488)
Q Consensus 108 ~~~~~~--~~g~i~~L~~-------~L~~~~~---------~v~~~a~~~L~~l~~-~~~~~~-~~~~~~~~l~~L~~ll 167 (488)
.+..+. -....+.++. .+.+... ++...++.+++.+.. +.+..- ..+. ..++.+...+
T Consensus 163 ~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~--~~~~~~~~~l 240 (960)
T 1wa5_C 163 LFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQ--VGMGIFHKYL 240 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH--HHHHHHHHHH
Confidence 222110 0112333333 2443211 233346666666643 222211 1111 1223334444
Q ss_pred ccc-----cc---------HhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-----cCChhHHHHHHHHHHHhc
Q 011328 168 NEH-----AK---------LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-----SNDDEVLTDACWALSYLS 228 (488)
Q Consensus 168 ~~~-----~~---------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~-----~~~~~v~~~al~~L~~l~ 228 (488)
... .+ ..++..++.++..+....+..-......+++.+...+. ..++.++..++..+..++
T Consensus 241 ~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~ 320 (960)
T 1wa5_C 241 SYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVT 320 (960)
T ss_dssp SCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHH
T ss_pred cCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHh
Confidence 210 11 24677888888887754322111233455666666664 236788899999998887
Q ss_pred cCCchh--HH--HHHHhCCH-HHHHHhcC-----------------------CCCcchHhHHHHHHhHhhcCCchhhHHH
Q 011328 229 DGTNDK--IQ--AVIEAGVC-PRLVELLR-----------------------HPSPSVLIPALRTVGNIVTGDDMQTQCI 280 (488)
Q Consensus 229 ~~~~~~--~~--~~~~~~~l-~~L~~lL~-----------------------~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 280 (488)
...... .+ .++. .++ +.++..+. +.....|..|..+|..++...+. .+
T Consensus 321 ~~~~~~~~~~~~~~l~-~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~---~v 396 (960)
T 1wa5_C 321 RIPKYFEIFNNESAMN-NITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV---LV 396 (960)
T ss_dssp TSHHHHGGGCSHHHHH-HHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHH---HH
T ss_pred CcHhHHHHHcCchHHH-HHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcch---hH
Confidence 543211 00 1111 222 22333321 11125677888888888775442 12
Q ss_pred hhCCChHHHHHHhc------ccchhhHHHHHHHHHHHHhcCC--HH----------HHHHHHHcCChHHHHHHHhcC---
Q 011328 281 INHQALPCLLDLLT------QNYKKSIKKEACWTISNITAGN--VN----------QIQAIIEAGIIGPLVNLLLNA--- 339 (488)
Q Consensus 281 ~~~~~~~~L~~lL~------~~~~~~v~~~a~~~L~nl~~~~--~~----------~~~~l~~~~~l~~L~~ll~~~--- 339 (488)
+. .+++.+...+. +. ++..|..|+.+++.++.+. .+ ....++...+ +..+.++
T Consensus 397 ~~-~~l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v----~p~l~~~~~~ 470 (960)
T 1wa5_C 397 TN-IFLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEI----APDLTSNNIP 470 (960)
T ss_dssp HH-HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHT----HHHHHCSSCS
T ss_pred HH-HHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHh----HHHhcCCCCC
Confidence 11 23445555555 44 6788999999999997531 10 1222222123 3334555
Q ss_pred ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011328 340 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 340 ~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~ 400 (488)
++.+|..|+|+++.++..-.++.... +++.+++.+.++++.++..|+.+|.+++..
T Consensus 471 ~p~vr~~a~~~lg~~~~~~~~~~l~~-----~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQLTKAQLIE-----LMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGSCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred CceehHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 78899999999999987654443332 577888888888899999999999999874
No 83
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.53 E-value=5.1e-05 Score=81.63 Aligned_cols=397 Identities=10% Similarity=0.066 Sum_probs=207.5
Q ss_pred CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHh-------hcCCCC--hhHHHHHHHHHHHhcCCCchhh---
Q 011328 42 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEF-------LSRDDF--PQLQFEAAWALTNIASGTSENT--- 109 (488)
Q Consensus 42 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~l-------L~~~~~--~~v~~~a~~~L~~l~~~~~~~~--- 109 (488)
++++++..|+.++..++...........+. .+++.++.+ +.+.+. ++.....++.+..++......-
T Consensus 256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 334 (971)
T 2x1g_F 256 DENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG 334 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999987532111111111 123333332 233331 2666677777777764222110
Q ss_pred ---------HHHHhCCCHHHHHHhhCC-----CCHHHHHHHHHHHhhhhCC---------CchhHHHHHh--cCChHHHH
Q 011328 110 ---------RVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGD---------SPKCRDLVLS--NGALMPLL 164 (488)
Q Consensus 110 ---------~~~~~~g~i~~L~~~L~~-----~~~~v~~~a~~~L~~l~~~---------~~~~~~~~~~--~~~l~~L~ 164 (488)
..+. ..++.++.+... .++++...+++.+..++.. .+........ ...++.++
T Consensus 335 ~~~~~~~~~~~l~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 412 (971)
T 2x1g_F 335 ITSADPELSILVH--RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILV 412 (971)
T ss_dssp HHTCCHHHHHHHH--HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH
T ss_pred hccCcccccHHHH--HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 1111 345666665533 4788899999988877541 1111111111 12344444
Q ss_pred HHhccccc--------------HhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcc-----CChhHHHHHHHHHH
Q 011328 165 AQFNEHAK--------------LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-----NDDEVLTDACWALS 225 (488)
Q Consensus 165 ~ll~~~~~--------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~-----~~~~v~~~al~~L~ 225 (488)
..+...++ ...|..+..++..++...+ ......+++.+...+.+ .+...++.++.+++
T Consensus 413 ~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~ 489 (971)
T 2x1g_F 413 RKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN---DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQ 489 (971)
T ss_dssp HHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT---THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence 44421111 1345666677777665432 22333444455555543 57889999999999
Q ss_pred HhccCCchhHHHHHHhCCHHHHHHhcC-CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHH
Q 011328 226 YLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE 304 (488)
Q Consensus 226 ~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~ 304 (488)
.++..........+. .+++.+..+.. +.++.++..++++++.++..-....+ .+ ..+++.++..| + +.++..
T Consensus 490 ~iae~~~~~~~~~l~-~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l-~~vl~~l~~~l-~---~~v~~~ 562 (971)
T 2x1g_F 490 SVAEHFGGEEKRQIP-RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YI-PPAINLLVRGL-N---SSMSAQ 562 (971)
T ss_dssp HTTTC------CHHH-HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH-HHHHHHHHHHH-H---SSCHHH
T ss_pred HHHhhcChhhhHHHH-HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HH-HHHHHHHHHHh-C---hHHHHH
Confidence 998765433221111 23332222221 34788999999999998863222111 11 13455566666 2 578999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCC-HHHHHHHHH--CCChHHHHhhc
Q 011328 305 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGS-NEQIKFLVS--QGCIKPLCDLL 379 (488)
Q Consensus 305 a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~--~~~i~~L~~ll 379 (488)
|++++.+++..........++ .++..+..++..+ +.+.+..+..+++.++.... .+...++.. ..++..+..++
T Consensus 563 A~~al~~l~~~~~~~l~p~~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~ 641 (971)
T 2x1g_F 563 ATLGLKELCRDCQLQLKPYAD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAIC 641 (971)
T ss_dssp HHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999755554444443 4777788888874 57888999999999976432 233333222 12333343444
Q ss_pred CCC--CHHHHHH---HHHHHHHHHHhhhhhh-ccCCCC-ccchHHHHHHhhccHHHHHHhhcC--CCHHHHHHHHHHHHH
Q 011328 380 NCP--DPRIVTV---CLEGLENILKAGEAEK-NMGNTG-GVNLFAQAIDDAEGLEKIENLQSH--DNTEIYEKAVKILET 450 (488)
Q Consensus 380 ~~~--~~~v~~~---al~~L~~l~~~~~~~~-~~~~~~-~~~~~~~~l~~~g~~~~L~~l~~~--~~~~v~~~a~~~l~~ 450 (488)
+.. +++.+.. ++..|..++..-.... ...+.. ..+.+...+. ..++.+..+... .++.+.+.+..++.+
T Consensus 642 ~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~~~v~e~~~~~~~~ 719 (971)
T 2x1g_F 642 QADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQ--RTMPIFKRIAEMWVEEIDVLEAACSAMKH 719 (971)
T ss_dssp TC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHH--TTHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHH--HHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 433 3323333 4444444443221100 000000 0011223232 346666665432 467899998888887
Q ss_pred hcCC
Q 011328 451 YWVE 454 (488)
Q Consensus 451 ~~~~ 454 (488)
+...
T Consensus 720 ~~~~ 723 (971)
T 2x1g_F 720 AITN 723 (971)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5443
No 84
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.50 E-value=4.7e-08 Score=77.68 Aligned_cols=122 Identities=18% Similarity=0.186 Sum_probs=93.6
Q ss_pred HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchh
Q 011328 71 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150 (488)
Q Consensus 71 ~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (488)
....++.+..+|++++ +.+|..|+++|+.+.. ..++.|+.+|+++++.+|..++++|+++.. +
T Consensus 10 ~~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~-- 72 (131)
T 1te4_A 10 HSSGLVPRGSHMADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E-- 72 (131)
T ss_dssp -----------CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H--
T ss_pred ccccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H--
Confidence 3467888999999988 8999999999887643 126899999999999999999999999852 1
Q ss_pred HHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHh
Q 011328 151 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 227 (488)
Q Consensus 151 ~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l 227 (488)
..++.|+..+ ++.++.++..++++|..+.. ...++.|..+++++++.++..+..+|..+
T Consensus 73 -------~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 -------RAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -------HHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 1467888888 78899999999999999863 36789999999999999999999988653
No 85
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.50 E-value=5.6e-05 Score=71.51 Aligned_cols=321 Identities=12% Similarity=0.089 Sum_probs=194.8
Q ss_pred ccHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCC---ccHHHHHHcCCH-HHHHHhhcCCCChhHHHHHHHHHHHhcCC
Q 011328 30 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERS---PPINEVIQSGVV-PRFIEFLSRDDFPQLQFEAAWALTNIASG 104 (488)
Q Consensus 30 ~~i~~l~~~L~-s~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~~~~i-~~L~~lL~~~~~~~v~~~a~~~L~~l~~~ 104 (488)
.....++++|+ ..+.++....+..+..++... + .....+.+..-. ..+.....+.+..-....+..++..++..
T Consensus 77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~-~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSD-KYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcC-cchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 34567888887 477888888999999988865 3 233333333222 22333222334255566777776666543
Q ss_pred Cch---hhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcC--ChHHHHHHhccc--------
Q 011328 105 TSE---NTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNG--ALMPLLAQFNEH-------- 170 (488)
Q Consensus 105 ~~~---~~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~l~~L~~ll~~~-------- 170 (488)
++. ....++... -++..|.+ .+...+..++.+|..+.... ..|..+.+.+ .+++++..+...
T Consensus 156 ~~~~~~~l~~l~~~~---~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~-~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~ 231 (480)
T 1ho8_A 156 GLHNVKLVEKLLKNN---NLINILQNIEQMDTCYVCIRLLQELAVIP-EYRDVIWLHEKKFMPTLFKILQRATDSQLATR 231 (480)
T ss_dssp TTCCHHHHHHHHHCH---HHHHHHHCTTCHHHHHHHHHHHHHHHTSH-HHHHHHHTTHHHHHHHHHHHHHHHHC------
T ss_pred CCccHhHHHHHhhhH---HHHHHhccccCCchHHHHHHHHHHHhcch-hHHHHHHHcccchhHHHHHHHHHhhccccccc
Confidence 322 112222111 34444544 34555677888888888654 4677766543 355565444211
Q ss_pred --------ccHhHHHHHHHHHHHhhcCCCCCChhhhhch--HHHHHHhhcc-CChhHHHHHHHHHHHhccCCch----hH
Q 011328 171 --------AKLSMLRNATWTLSNFCRGKPQPLFEQTRPA--LPALERLIHS-NDDEVLTDACWALSYLSDGTND----KI 235 (488)
Q Consensus 171 --------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~~~l~~ll~~-~~~~v~~~al~~L~~l~~~~~~----~~ 235 (488)
...+++..++.+++-++...+........++ ++.++..++. ..+++..-++.++.|+....+. ..
T Consensus 232 ~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~ 311 (480)
T 1ho8_A 232 IVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVI 311 (480)
T ss_dssp -------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred cccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHH
Confidence 1356788999999999877532222222222 2556666664 5799999999999999976531 11
Q ss_pred H-HHHHhCCHHHHHHhcCC---CCcchHhHHHHHHhH-------hhc--------------CCchhhH---------HHh
Q 011328 236 Q-AVIEAGVCPRLVELLRH---PSPSVLIPALRTVGN-------IVT--------------GDDMQTQ---------CII 281 (488)
Q Consensus 236 ~-~~~~~~~l~~L~~lL~~---~~~~v~~~a~~~L~~-------l~~--------------~~~~~~~---------~~~ 281 (488)
. .++..++++ +++.|.. .++++....-..... ++. -+|.... .+.
T Consensus 312 ~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~ 390 (480)
T 1ho8_A 312 KQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFK 390 (480)
T ss_dssp HHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGS
T ss_pred HHHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHH
Confidence 2 233334544 4444433 344444332211111 111 0121111 111
Q ss_pred --hCCChHHHHHHhcc---------cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHH
Q 011328 282 --NHQALPCLLDLLTQ---------NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA 350 (488)
Q Consensus 282 --~~~~~~~L~~lL~~---------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~a 350 (488)
+..++..|.++|++ +.++.+..-||.=++.++.+.|..+..+-+.|+=..+++++.++|++||.+|+.|
T Consensus 391 e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~a 470 (480)
T 1ho8_A 391 KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKA 470 (480)
T ss_dssp SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence 22467889999974 2378888899999999999778877777788999999999999999999999999
Q ss_pred HHHhcc
Q 011328 351 ISNATS 356 (488)
Q Consensus 351 L~~l~~ 356 (488)
+..+..
T Consensus 471 vQklm~ 476 (480)
T 1ho8_A 471 TQAIIG 476 (480)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 86
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.43 E-value=4e-08 Score=78.06 Aligned_cols=120 Identities=17% Similarity=0.166 Sum_probs=91.4
Q ss_pred hCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHH
Q 011328 241 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 320 (488)
Q Consensus 241 ~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 320 (488)
...++.+...|+++++.+|..|+++|+.+.. ..++.|+..|+++ ++.+|..|+++|+++.. +.
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~--~~-- 73 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD--ER-- 73 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS--HH--
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCC-CHHHHHHHHHHHHhcCC--HH--
Confidence 3667889999999999999999998887642 1258899999988 99999999999998853 22
Q ss_pred HHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHH
Q 011328 321 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN 396 (488)
Q Consensus 321 ~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~ 396 (488)
.++.|+..+.++++.||..|+++|+++.. ++ .++.|..+++++++.++..+..+|.+
T Consensus 74 -------a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---~~---------a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 74 -------AVEPLIKLLEDDSGFVRSGAARSLEQIGG---ER---------VRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -------HHHHHHHHHHHCCTHHHHHHHHHHHHHCS---HH---------HHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -------HHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HH---------HHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 47888899999999999999999999852 22 46778888899999999999988764
No 87
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.35 E-value=4.6e-05 Score=79.53 Aligned_cols=304 Identities=15% Similarity=0.118 Sum_probs=205.7
Q ss_pred HHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCC--CChhhh
Q 011328 121 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ--PLFEQT 198 (488)
Q Consensus 121 L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~ 198 (488)
+.+.+...+..-+..++..+..+........ ....+.+..+.+.+.+..+. +.|+.++..++..... ......
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e~~~ 93 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVEPYI 93 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred HHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcccch
Confidence 4444443333334555666666654321111 11124566677777333333 8999999999966522 333444
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC-CcchHhHHHHHHhHhhcCCchhh
Q 011328 199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTGDDMQT 277 (488)
Q Consensus 199 ~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~ 277 (488)
-+.+|.++....+....|+..|-.++..+...-+...- ..+++.|+..|.+. .++.+..|+.++..++...+...
T Consensus 94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~ 169 (986)
T 2iw3_A 94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQV 169 (986)
T ss_dssp HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHH
Confidence 56788888888888899999988888887754333211 25678888888654 68999999999999997655444
Q ss_pred HHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc--CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011328 278 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 355 (488)
Q Consensus 278 ~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~ 355 (488)
...+. .++|.+...+.+. .++|+..|..++..++. ++.+. ..++|.|++.+.+++. ..++...|+..+
T Consensus 170 ~~~~~-~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~~--~~~~~~~l~~~t 239 (986)
T 2iw3_A 170 ALRMP-ELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPTE--VPETVHLLGATT 239 (986)
T ss_dssp HHHHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTTH--HHHHHHHHTTCC
T ss_pred HHhcc-chhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChhh--hHHHHHHhhcCe
Confidence 33333 5788888888888 89999999999998887 44442 2479999999998843 456677777666
Q ss_pred cCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHh-hc
Q 011328 356 SGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL-QS 434 (488)
Q Consensus 356 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l-~~ 434 (488)
.....+ ...|.= .++.|.+-|......+...+.-.+.|+++.-+.... ....+ -..++.+++. ..
T Consensus 240 fv~~v~-~~~l~~--~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~---------~~~f~--~~l~p~~~~~~~~ 305 (986)
T 2iw3_A 240 FVAEVT-PATLSI--MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQV---------IAPFL--GKLLPGLKSNFAT 305 (986)
T ss_dssp CCSCCC-HHHHHH--HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHH---------HHHHH--TTTHHHHHHHTTT
T ss_pred eEeeec-chhHHH--HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHH---------Hhhhh--hhhhhHHHHHhhc
Confidence 544211 122211 478888899988888999999999999987665432 22222 2246777775 45
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCC
Q 011328 435 HDNTEIYEKAVKILETYWVEEDE 457 (488)
Q Consensus 435 ~~~~~v~~~a~~~l~~~~~~~~~ 457 (488)
-.+||+++.|.+.+..+......
T Consensus 306 ~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 306 IADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHHHHhhcc
Confidence 57999999999999988777555
No 88
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.26 E-value=0.00041 Score=74.58 Aligned_cols=402 Identities=13% Similarity=0.108 Sum_probs=209.4
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCcc-HHHH---HH--cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP-INEV---IQ--SGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 103 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~-~~~~---~~--~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~ 103 (488)
..++.+++.+. +++++..|+.++..+++...... ...+ .. -+..+.+...+...+ .+.....++.+..++.
T Consensus 241 ~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d-~~~~~~~~~l~~~~~~ 317 (963)
T 2x19_B 241 ALIQAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD-METSHGICRIAVALGE 317 (963)
T ss_dssp HHHHHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC-HHHHHHHHHHHHHHHH
Confidence 45666666663 56788899999999987542111 1111 11 112222222334445 5556666677766654
Q ss_pred CCchh-------hHHHHhCCCHHHHHHhhCC-----CCHHHHHHHHHHHhhhhCCC--------chhHHHHHh--cCChH
Q 011328 104 GTSEN-------TRVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDS--------PKCRDLVLS--NGALM 161 (488)
Q Consensus 104 ~~~~~-------~~~~~~~g~i~~L~~~L~~-----~~~~v~~~a~~~L~~l~~~~--------~~~~~~~~~--~~~l~ 161 (488)
..+.. ...+. .+++.++.+... .++++...++..+..++... +........ ...++
T Consensus 318 ~~~~~l~~~~~~~~~~~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 395 (963)
T 2x19_B 318 NHSRALLDQVEHWQSFL--ALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVD 395 (963)
T ss_dssp HHHHHHHHCGGGHHHHH--HHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHcCccchHHHH--HHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 21111 11111 345666665554 34556666666666665411 111111110 01233
Q ss_pred HHHHHhccccc--------------HhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh----ccCChhHHHHHHHH
Q 011328 162 PLLAQFNEHAK--------------LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI----HSNDDEVLTDACWA 223 (488)
Q Consensus 162 ~L~~ll~~~~~--------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll----~~~~~~v~~~al~~ 223 (488)
.++..+...++ ...+..+..+|..++...+ ......+.+.+...+ .+.++..++.++++
T Consensus 396 ~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~a 472 (963)
T 2x19_B 396 VLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLG---AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYG 472 (963)
T ss_dssp HHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHH
T ss_pred HHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34444421111 0224455555655553211 112233444444555 45678899999999
Q ss_pred HHHhccCCchhHHHHHHhCCHHHHHHhc---CCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhh
Q 011328 224 LSYLSDGTNDKIQAVIEAGVCPRLVELL---RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS 300 (488)
Q Consensus 224 L~~l~~~~~~~~~~~~~~~~l~~L~~lL---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~ 300 (488)
++.++........ ..++.++..+ .++++.++..++++++.++..-.... ..+ ..+++.++..|.+ +.
T Consensus 473 l~~i~~~~~~~~~-----~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~l~~~l~~---~~ 542 (963)
T 2x19_B 473 FQSIAETIDVNYS-----DVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLPLVLHALGN---PE 542 (963)
T ss_dssp HHHHTTSCCSSCC-----SHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHHHHHHTTC---GG
T ss_pred HHHHHhhcCchhh-----HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHHHHHHhCC---ch
Confidence 9999976443211 2223333332 33567899999999999886422222 222 3688888888854 67
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCC-HHHHHHHHHCCChHHHHh
Q 011328 301 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGS-NEQIKFLVSQGCIKPLCD 377 (488)
Q Consensus 301 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~~~~i~~L~~ 377 (488)
++..|++++.+++....+.....++ .++..+..++..+ +.+.+..+..+++.++.... .+..+++. .+++.+..
T Consensus 543 V~~~A~~al~~l~~~~~~~l~p~~~-~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~--~l~~~l~~ 619 (963)
T 2x19_B 543 LSVSSVSTLKKICRECKYDLPPYAA-NIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLH--SLISPYIQ 619 (963)
T ss_dssp GHHHHHHHHHHHHHHTGGGCTTTHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHHHHH
Confidence 9999999999998633322211121 2455566666653 56788999999999986544 33333322 24444444
Q ss_pred hc----CC-CCHHHHH---HHHHHHHHHHHhhhhhhccC-C----------CCccchHHHHHHhhccHHHHHHhh--cCC
Q 011328 378 LL----NC-PDPRIVT---VCLEGLENILKAGEAEKNMG-N----------TGGVNLFAQAIDDAEGLEKIENLQ--SHD 436 (488)
Q Consensus 378 ll----~~-~~~~v~~---~al~~L~~l~~~~~~~~~~~-~----------~~~~~~~~~~l~~~g~~~~L~~l~--~~~ 436 (488)
.+ +. .+++.+. ..+++|..++..-....... . .....++...+.+ .++.+..++ ...
T Consensus 620 ~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 697 (963)
T 2x19_B 620 QLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQ--VFQLIQKVLSKWLN 697 (963)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHH--HHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHH--HHHHHHHHHHhccC
Confidence 33 22 2444443 45566666655422110000 0 0011223333332 244444443 234
Q ss_pred CHHHHHHHHHHHHHhcCC
Q 011328 437 NTEIYEKAVKILETYWVE 454 (488)
Q Consensus 437 ~~~v~~~a~~~l~~~~~~ 454 (488)
+.++.+.+..++.++...
T Consensus 698 ~~~v~e~~~~~l~~~~~~ 715 (963)
T 2x19_B 698 DAQVVEAVCAIFEKSVKT 715 (963)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHh
Confidence 678888888888886543
No 89
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.22 E-value=3e-05 Score=83.42 Aligned_cols=337 Identities=9% Similarity=0.045 Sum_probs=180.7
Q ss_pred CCHHHHHHHHHHHHHHhccC-------CCccHHHHH---HcCCHHHHHHhhcCCCC-------h-------hHHHHHHHH
Q 011328 42 DDRNIQLDATTQFRKLLSIE-------RSPPINEVI---QSGVVPRFIEFLSRDDF-------P-------QLQFEAAWA 97 (488)
Q Consensus 42 ~~~~~~~~a~~~L~~l~~~~-------~~~~~~~~~---~~~~i~~L~~lL~~~~~-------~-------~v~~~a~~~ 97 (488)
.++.+...++..+..++... +........ -..+++.++..+..++. + ..|..+..+
T Consensus 365 ~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~ 444 (971)
T 2x1g_F 365 VEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDT 444 (971)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHH
Confidence 46777888888877764410 011111111 12345555555533221 1 355666677
Q ss_pred HHHhcCCCc-hhhHHHHhCCCHHHHHHhhCC-----CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHh---c
Q 011328 98 LTNIASGTS-ENTRVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF---N 168 (488)
Q Consensus 98 L~~l~~~~~-~~~~~~~~~g~i~~L~~~L~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll---~ 168 (488)
+..++...+ ..-..+ ++.+...+.+ .+...++.++.+++.++....... ...++.++..+ .
T Consensus 445 l~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~ 514 (971)
T 2x1g_F 445 FMYCYDVLNDYILEIL-----AAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIP 514 (971)
T ss_dssp HHHHHTTCTTHHHHHH-----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSC
T ss_pred HHHHHHHHhHHHHHHH-----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcC
Confidence 777665332 111111 2333333332 577899999999999987644211 12334444333 2
Q ss_pred c-cccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHH
Q 011328 169 E-HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 247 (488)
Q Consensus 169 ~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L 247 (488)
. +.++.++..++|+++.++..-.. .......+++.++..+ + +.++..|+.++.++++.........++ .++..+
T Consensus 515 ~~d~~~~vr~~a~~~l~~~~~~l~~-~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~-~ll~~l 589 (971)
T 2x1g_F 515 YEKLNVKLLGTALETMGSYCNWLME-NPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYAD-PLLNAC 589 (971)
T ss_dssp TTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHH-HHHHHH
Confidence 1 34788999999999999865321 1245667888888888 3 789999999999999655443333332 566777
Q ss_pred HHhcCCC--CcchHhHHHHHHhHhhcCCc-hhhHHHhhCCChHHHHH----Hhcccc-hhhHHHHHHHHHHHHh---c--
Q 011328 248 VELLRHP--SPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLD----LLTQNY-KKSIKKEACWTISNIT---A-- 314 (488)
Q Consensus 248 ~~lL~~~--~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~----lL~~~~-~~~v~~~a~~~L~nl~---~-- 314 (488)
..++..+ +...+..++.+++.++...+ ......++ .+++.++. +++... +.+.+......+..++ .
T Consensus 590 ~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l 668 (971)
T 2x1g_F 590 HASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSL 668 (971)
T ss_dssp HHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhc
Confidence 7777763 46788888999998876432 22222222 23333333 333221 1222333333443333 2
Q ss_pred CC-----------HHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC
Q 011328 315 GN-----------VNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC 381 (488)
Q Consensus 315 ~~-----------~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~ 381 (488)
.. ++....+ ...+++.+..++... +..+.+.++++++.++..-..+...++- ..++.|...+..
T Consensus 669 ~~~~~~~~~~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~--~~~~~l~~~~~~ 745 (971)
T 2x1g_F 669 NTDVDEQATDQPIVQPVLLV-MQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQ--DLCLFIVASFQT 745 (971)
T ss_dssp TC-------------CCHHH-HHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHH--HHHHHHHHHCC-
T ss_pred CCCcCcccccccCCCchHHH-HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHH--HHHHHHHHHHhc
Confidence 11 1111222 245888888888653 6789999999999976432112222211 234555555554
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 011328 382 PDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 382 ~~~~v~~~al~~L~~l~~~ 400 (488)
... ..+++.+..++..
T Consensus 746 ~~~---~~~l~l~~~~i~~ 761 (971)
T 2x1g_F 746 RCC---APTLEISKTAIVM 761 (971)
T ss_dssp -CC---HHHHHHHHHHHTT
T ss_pred CCc---hHHHHHHHHHHHH
Confidence 322 2356666666553
No 90
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.22 E-value=2.7e-05 Score=69.93 Aligned_cols=187 Identities=15% Similarity=0.102 Sum_probs=138.0
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHh
Q 011328 202 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII 281 (488)
Q Consensus 202 ~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 281 (488)
+..+++-|.+.+......++.-|..+...+.+....+++.+++..|+......+...+..++.++.++..+....-..+-
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs 199 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence 34556667778888899999999996666667888899999999999999999999999999999999885433222222
Q ss_pred hCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH--------c--CChHHHHHHHh---cCChhHHHHHH
Q 011328 282 NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE--------A--GIIGPLVNLLL---NAEFEIKKEAA 348 (488)
Q Consensus 282 ~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~--~~l~~L~~ll~---~~~~~v~~~a~ 348 (488)
...++..+..++.+. +..|.+.|+..|..++..++.....+.+ . ..+..|+.+|+ +.|.+++.+|.
T Consensus 200 ~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 200 HSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp CHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 557889999999976 8999999999999998754433322221 1 24889999997 66899999999
Q ss_pred HHHHHhccCCC-HH----HHHHHHHCCChHHHHhhcCCC--CHHHHHH
Q 011328 349 WAISNATSGGS-NE----QIKFLVSQGCIKPLCDLLNCP--DPRIVTV 389 (488)
Q Consensus 349 ~aL~~l~~~~~-~~----~~~~l~~~~~i~~L~~ll~~~--~~~v~~~ 389 (488)
..+..+....+ .+ ....+-+.|.-..+.+.++.. +++++.+
T Consensus 279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 88888776543 22 344455556556666666654 5565544
No 91
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.19 E-value=0.00062 Score=72.65 Aligned_cols=340 Identities=12% Similarity=0.088 Sum_probs=183.7
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHH-HhhcCCCChhHHHHHHHHHHHhcCC-C--c--hhhHHHHh
Q 011328 41 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFI-EFLSRDDFPQLQFEAAWALTNIASG-T--S--ENTRVVID 114 (488)
Q Consensus 41 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~-~lL~~~~~~~v~~~a~~~L~~l~~~-~--~--~~~~~~~~ 114 (488)
+.++++...++.++...++ .-....+++.+.++.++ .+|. + ++++..|+.||..+... . + +....+..
T Consensus 206 ~~~~~l~~~~L~~l~s~l~---WI~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~ 279 (1023)
T 4hat_C 206 GASSSLIVATLESLLRYLH---WIPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL 279 (1023)
T ss_dssp CSSCHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH---hCCHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence 4567777788888888775 34467778889999999 8885 3 78999999999999872 2 2 12211110
Q ss_pred C--CCHHHH--------------HHhhCCCCHHHHHHHHHHHhhhhC-------CCchhHHHHHhcCChHHHHHHhcccc
Q 011328 115 H--GAVPIF--------------VRLLSSPTDDVREQAVWALGNVAG-------DSPKCRDLVLSNGALMPLLAQFNEHA 171 (488)
Q Consensus 115 ~--g~i~~L--------------~~~L~~~~~~v~~~a~~~L~~l~~-------~~~~~~~~~~~~~~l~~L~~ll~~~~ 171 (488)
. +.++.+ ...-..++.+.....++.+..+.. ..+..+..+. .++..++..- ..+
T Consensus 280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~ 356 (1023)
T 4hat_C 280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE 356 (1023)
T ss_dssp HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence 0 111111 111122346666666666655542 1122122211 1223344433 445
Q ss_pred cHhHHHHHHHHHHHhhcCCC--CCChhhhh----chHHHHHHhhccCC--------------------hh-HHHHHH-HH
Q 011328 172 KLSMLRNATWTLSNFCRGKP--QPLFEQTR----PALPALERLIHSND--------------------DE-VLTDAC-WA 223 (488)
Q Consensus 172 ~~~v~~~a~~~L~~l~~~~~--~~~~~~~~----~~~~~l~~ll~~~~--------------------~~-v~~~al-~~ 223 (488)
+.++...++..-..+..... ........ .+++.+++.+.-+. .+ ...... .+
T Consensus 357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~ 436 (1023)
T 4hat_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV 436 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence 67776776665555554221 11122222 33444444433221 00 011011 22
Q ss_pred HHHhccCCc-hhHHHHHHhCCHHHHHHhcCC--CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcc-----
Q 011328 224 LSYLSDGTN-DKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ----- 295 (488)
Q Consensus 224 L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~----- 295 (488)
|..++.-.. +..+ -.++.+.+.+.+ .++..+++++++++.++.+-......-.-..+++.|+.++.+
T Consensus 437 L~~l~~l~~~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d 511 (1023)
T 4hat_C 437 LVYLTHLNVIDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD 511 (1023)
T ss_dssp HHHHHHHCHHHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHhccCHHHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc
Confidence 222221111 1111 122334444443 568899999999999998654432222222567778887764
Q ss_pred cchhhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHH--------
Q 011328 296 NYKKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIK-------- 364 (488)
Q Consensus 296 ~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~-------- 364 (488)
+ ...++..++|+++.++. .+++... .++..|++.+..+++.++..|++++.+++..+......
T Consensus 512 ~-k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p 585 (1023)
T 4hat_C 512 N-KAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEP 585 (1023)
T ss_dssp H-HHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSC
T ss_pred c-hHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCch
Confidence 3 45567788899998876 2343322 24556777777777889999999999999754332210
Q ss_pred HHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011328 365 FLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 365 ~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 402 (488)
++- .++..+......-+++-+..+.+++..++...+
T Consensus 586 ~~~--~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 586 FIQ--TIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHH--HHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred hHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 111 123333444444456666777777777776543
No 92
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.17 E-value=0.0027 Score=68.80 Aligned_cols=355 Identities=11% Similarity=0.127 Sum_probs=190.1
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhc---cCCCc---c-H-----HHHHH--cCCHHHHHHhhcCCCChhHHHHHH
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLS---IERSP---P-I-----NEVIQ--SGVVPRFIEFLSRDDFPQLQFEAA 95 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~---~~~~~---~-~-----~~~~~--~~~i~~L~~lL~~~~~~~v~~~a~ 95 (488)
+.++.+++.++ .++..+..++..|..+.. ..+.+ . . ..+.. ..+++.+..++.+..++.++..++
T Consensus 138 ~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL 216 (1049)
T 3m1i_C 138 EFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATL 216 (1049)
T ss_dssp THHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 44566777776 455445455555554432 11011 0 0 11221 123444455555444478999999
Q ss_pred HHHHHhcCCCchhhHHHHhCCCHHHHH-HhhCCCCHHHHHHHHHHHhhhhCCC--ch---hHHHHHhcCChHHHHHHh--
Q 011328 96 WALTNIASGTSENTRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGDS--PK---CRDLVLSNGALMPLLAQF-- 167 (488)
Q Consensus 96 ~~L~~l~~~~~~~~~~~~~~g~i~~L~-~~L~~~~~~v~~~a~~~L~~l~~~~--~~---~~~~~~~~~~l~~L~~ll-- 167 (488)
.++.+...-.+ ...+.+..+++.+. .++ .+++++..|+.+|..+.... +. ....+.. .++.++..+
T Consensus 217 ~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~--l~~~~l~~l~~ 290 (1049)
T 3m1i_C 217 ESLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL--FFQNTLQQIAT 290 (1049)
T ss_dssp HHHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHH--HHHHHHHHHHH
Confidence 99988776222 23355667777777 344 37899999999999998542 21 1111111 111122211
Q ss_pred ---------------cccccHhHHHHHHHHHHHhhcCC------CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHH
Q 011328 168 ---------------NEHAKLSMLRNATWTLSNFCRGK------PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSY 226 (488)
Q Consensus 168 ---------------~~~~~~~v~~~a~~~L~~l~~~~------~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~ 226 (488)
..+.+.+.....+..+..+.... +.........+++.++.....++..+...++..+..
T Consensus 291 si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~ 370 (1049)
T 3m1i_C 291 SVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHN 370 (1049)
T ss_dssp HTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred hhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 01224444455555554433211 111122234567777777777788888888888877
Q ss_pred hcc----CC--chhHHHHHHhCCHHHHHHhcCCCCc----------------------chHhHHHHHHhHhhcCCchhhH
Q 011328 227 LSD----GT--NDKIQAVIEAGVCPRLVELLRHPSP----------------------SVLIPALRTVGNIVTGDDMQTQ 278 (488)
Q Consensus 227 l~~----~~--~~~~~~~~~~~~l~~L~~lL~~~~~----------------------~v~~~a~~~L~~l~~~~~~~~~ 278 (488)
++. .. ......++. .+++.++..+..+++ ..+..+..+|..++...+....
T Consensus 371 l~~~l~~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l 449 (1049)
T 3m1i_C 371 LVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTE 449 (1049)
T ss_dssp HHHHHHHSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHhchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 765 21 112222222 345555555533210 1122345555555532221111
Q ss_pred HHhhCCChHHHHHHhcc-cchhhHHHHHHHHHHHHhcCCHHH-HHHHHHcCChHHHHHHHhc-----CChhHHHHHHHHH
Q 011328 279 CIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVNQ-IQAIIEAGIIGPLVNLLLN-----AEFEIKKEAAWAI 351 (488)
Q Consensus 279 ~~~~~~~~~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~-~~~l~~~~~l~~L~~ll~~-----~~~~v~~~a~~aL 351 (488)
. -+.+.+...+.+ ..++..+..++++++.++.+..+. ...+. ..+++.+..+... +++.++..+++++
T Consensus 450 ~----~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l-~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~l 524 (1049)
T 3m1i_C 450 E----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLTVKKRGKDNKAVVASDIMYVV 524 (1049)
T ss_dssp H----HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHTTSSCSHHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHH-HHHHHHHHHHHhhhccccchHHHHHHHHHHH
Confidence 1 123344444442 227788999999999998742222 11211 1245555543321 2344555688999
Q ss_pred HHhccCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011328 352 SNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 352 ~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 402 (488)
+.++..- .++... .+++.+.+.+.++++.++..|+.++.+++....
T Consensus 525 gry~~~~~~~~~~l~-----~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 525 GQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp HHCHHHHHHCHHHHH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 9776421 222222 367788888888899999999999999998654
No 93
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.13 E-value=7.1e-05 Score=67.24 Aligned_cols=156 Identities=13% Similarity=0.078 Sum_probs=124.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHH
Q 011328 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 111 (488)
Q Consensus 32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 111 (488)
...+++.|.+.+...+..++..|..+.+.+ .....+++..+++..|++.....+ .+.+..+++++.++.. .....+.
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D-~~Fa~EFI~~~GL~~Li~vi~~~~-gN~q~Y~L~AL~~LM~-~v~Gm~g 196 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQED-KDLVPEFVHSEGLSCLIRVGAAAD-HNYQSYILRALGQLML-FVDGMLG 196 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTC-TTHHHHHHHTTHHHHHHHHHTTSC-HHHHHHHHHHHHHHTT-SHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcc-hHHHHHHHHhccHHHHHHHHHhcC-hHHHHHHHHHHHHHHh-ccccccc
Confidence 456788888888888999999999977754 788999999999999999999988 8999999999999998 5555555
Q ss_pred HH-hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhc----------CChHHHHHHhc--ccccHhHHHH
Q 011328 112 VI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN----------GALMPLLAQFN--EHAKLSMLRN 178 (488)
Q Consensus 112 ~~-~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----------~~l~~L~~ll~--~~~~~~v~~~ 178 (488)
++ ....|..+..++.+.+..+...|+.+|..++..++.....+.+. ..+..++.+|. .+.|.+++.+
T Consensus 197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~ 276 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY 276 (339)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence 55 44678888889988889999999999999987765433333221 13778899994 2568889998
Q ss_pred HHHHHHHhhcCC
Q 011328 179 ATWTLSNFCRGK 190 (488)
Q Consensus 179 a~~~L~~l~~~~ 190 (488)
+...+-.+....
T Consensus 277 amtLIN~lL~~a 288 (339)
T 3dad_A 277 TVTLINKTLAAL 288 (339)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 888877766554
No 94
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.07 E-value=0.00058 Score=73.40 Aligned_cols=340 Identities=13% Similarity=0.111 Sum_probs=188.5
Q ss_pred cCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhh---CCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCC
Q 011328 83 SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL---SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA 159 (488)
Q Consensus 83 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 159 (488)
.+.+ -..++.++++++.++.+..+.. ...++.++..+ .++++.++..++++++.++..-....+. -...
T Consensus 459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~--l~~v 530 (963)
T 2x19_B 459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM--INSV 530 (963)
T ss_dssp CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH--HTTT
T ss_pred CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH--HHHH
Confidence 4445 6789999999999998543311 12344444433 3357889999999999997532111112 2357
Q ss_pred hHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCCc-hhHH
Q 011328 160 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTN-DKIQ 236 (488)
Q Consensus 160 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~v~~~al~~L~~l~~~~~-~~~~ 236 (488)
++.++..+ .+ +.++..|++++.+++......-......++..+..++.+. +...+..++.+++.++...+ +...
T Consensus 531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 77888887 33 7899999999999997543222234456666677777653 57888999999999886543 3333
Q ss_pred HHHHhCCHHHHHHhc----CCC-CcchHh---HHHHHHhHhhcCCch---------------------hhHHHhhCCChH
Q 011328 237 AVIEAGVCPRLVELL----RHP-SPSVLI---PALRTVGNIVTGDDM---------------------QTQCIINHQALP 287 (488)
Q Consensus 237 ~~~~~~~l~~L~~lL----~~~-~~~v~~---~a~~~L~~l~~~~~~---------------------~~~~~~~~~~~~ 287 (488)
..++ .+++.+...+ ... +++.+. ..+.+|+.+...-.. ..-..+...+++
T Consensus 608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (963)
T 2x19_B 608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ 686 (963)
T ss_dssp HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence 3332 3444444333 222 333333 344555554432110 000111223555
Q ss_pred HHHHHhccc-chhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHH----HHhcC-ChhHHHHHHHHHHHhcc--CCC
Q 011328 288 CLLDLLTQN-YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVN----LLLNA-EFEIKKEAAWAISNATS--GGS 359 (488)
Q Consensus 288 ~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~----ll~~~-~~~v~~~a~~aL~~l~~--~~~ 359 (488)
.+..++... .+..+.+.++.++..++..-.+... ..++.++. .+... .+ ..++.+..++. ..+
T Consensus 687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~~ 757 (963)
T 2x19_B 687 LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFAHE 757 (963)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCCC
Confidence 555555432 1467888888888887642111111 12333333 33321 22 23344444433 221
Q ss_pred H---HHHHHHHHCCChHHHHhhcC---CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccch-HHHHHHhhccHHHHHHh
Q 011328 360 N---EQIKFLVSQGCIKPLCDLLN---CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNL-FAQAIDDAEGLEKIENL 432 (488)
Q Consensus 360 ~---~~~~~l~~~~~i~~L~~ll~---~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~g~~~~L~~l 432 (488)
. .....+.+ .++.....++. ..+++++......+..++......-.. ... +.. .++.+...
T Consensus 758 ~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~-----~~~~~~~------i~~~~~~~ 825 (963)
T 2x19_B 758 PAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC-----ERLDVKA------VFQCAVLA 825 (963)
T ss_dssp TTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC-----TTSCHHH------HHHHHHHH
T ss_pred cchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC-----CcccHHH------HHHHHHHH
Confidence 1 11222111 12333333333 246899999999999998776543210 000 122 13444555
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCC
Q 011328 433 QSHDNTEIYEKAVKILETYWVEE 455 (488)
Q Consensus 433 ~~~~~~~v~~~a~~~l~~~~~~~ 455 (488)
+.+++..+...+...+.+++..-
T Consensus 826 l~~~~~~~~~~~l~~l~~l~~~~ 848 (963)
T 2x19_B 826 LKFPEAPTVKASCGFFTELLPRC 848 (963)
T ss_dssp TTCSCHHHHHHHHHHHHHHGGGT
T ss_pred cCCCCHHHHHHHHHHHHHHHhcC
Confidence 67889999999999999988653
No 95
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.04 E-value=0.0014 Score=69.96 Aligned_cols=315 Identities=10% Similarity=0.118 Sum_probs=176.5
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHH-HhhCCCCHHHHHHHHHHHhhhhCCC---c-
Q 011328 74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGDS---P- 148 (488)
Q Consensus 74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~~L~~~~~~v~~~a~~~L~~l~~~~---~- 148 (488)
+++.+.++|.++.++++...++.++.....-- ....+++.+.++.+. .++. +++++..|+.+|..+.... +
T Consensus 195 I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI--~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~ 270 (1023)
T 4hat_C 195 IFKLCFQVLEQGASSSLIVATLESLLRYLHWI--PYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDN 270 (1023)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTS--CTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhC--CHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCch
Confidence 44455555655444788889999999988721 245667788999999 8884 6889999999999998632 2
Q ss_pred -hhHHHHHhc--CChHHH-----------HHHh--cccccHhHHHHHHHHHHHhhcCCCC----C-C-hhhhhchHHHHH
Q 011328 149 -KCRDLVLSN--GALMPL-----------LAQF--NEHAKLSMLRNATWTLSNFCRGKPQ----P-L-FEQTRPALPALE 206 (488)
Q Consensus 149 -~~~~~~~~~--~~l~~L-----------~~ll--~~~~~~~v~~~a~~~L~~l~~~~~~----~-~-~~~~~~~~~~l~ 206 (488)
...+.+... +.+..+ -..+ ....|.+.....+..+..+...... . . ......++..++
T Consensus 271 ~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll 350 (1023)
T 4hat_C 271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLI 350 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH
Confidence 122111110 011111 1111 1233566666777777666543311 0 0 111122333555
Q ss_pred HhhccCChhHHHHHHHHHHHhccC---C---chhHHHHHHhCCHHHHHHhcCCCCc---------ch-H--------hHH
Q 011328 207 RLIHSNDDEVLTDACWALSYLSDG---T---NDKIQAVIEAGVCPRLVELLRHPSP---------SV-L--------IPA 262 (488)
Q Consensus 207 ~ll~~~~~~v~~~al~~L~~l~~~---~---~~~~~~~~~~~~l~~L~~lL~~~~~---------~v-~--------~~a 262 (488)
..-..++.++...++..-..++.. . ......+.. .+++.++..+..+.+ +. + ...
T Consensus 351 ~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~-~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~ 429 (1023)
T 4hat_C 351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQL 429 (1023)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHH-HHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHH
T ss_pred HhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH-HHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHH
Confidence 555567788877777766555531 0 111122222 355566666655430 00 0 011
Q ss_pred H----HHHhHhhcCCchhhHHHhhCCChHHHHHHhcc-cchhhHHHHHHHHHHHHhcCC-HHHHHHHHHcCChHHHHHHH
Q 011328 263 L----RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGN-VNQIQAIIEAGIIGPLVNLL 336 (488)
Q Consensus 263 ~----~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~~L~~ll 336 (488)
. .+|..++.-.... +++ -+++.+...+.+ ..++..++.++|+++.++.+- ++....++. .+++.|+.++
T Consensus 430 f~~~Rd~L~~l~~l~~~~---~~~-~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~-~vi~~Ll~l~ 504 (1023)
T 4hat_C 430 YKSEREVLVYLTHLNVID---TEE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLC 504 (1023)
T ss_dssp HHHHHHHHHHHHHHCHHH---HHH-HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHH---HHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHH-HHHHHHHHhh
Confidence 1 2222222111110 000 122333333333 237899999999999999853 332333332 3788888888
Q ss_pred hc-----CChhHHHHHHHHHHHhccCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 011328 337 LN-----AEFEIKKEAAWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA 403 (488)
Q Consensus 337 ~~-----~~~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~ 403 (488)
.. +...++..++|+++..+..- .++..+ .++..|.+.+.++++.+...|++++.+++..+..
T Consensus 505 ~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~ 573 (1023)
T 4hat_C 505 VKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1023)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred hccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 74 23446677889998876432 223222 3577788888888899999999999999986553
No 96
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.98 E-value=0.0019 Score=69.92 Aligned_cols=342 Identities=11% Similarity=0.089 Sum_probs=181.4
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC-chh----hHHHHh-
Q 011328 41 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT-SEN----TRVVID- 114 (488)
Q Consensus 41 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~-~~~----~~~~~~- 114 (488)
.+++.++..++.++...++-- ....+.+...++.+.+.+.. + ++++..|+.+|..+.... +.. ...+..
T Consensus 206 ~~~~~~~~~aL~~l~~~l~wi---~~~~~~~~~ll~~l~~~~l~-~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l 280 (1049)
T 3m1i_C 206 GSSSSLIVATLESLLRYLHWI---PYRYIYETNILELLSTKFMT-S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF 280 (1049)
T ss_dssp CCCHHHHHHHHHHHHHHTTTS---CTHHHHSSSHHHHHHTHHHH-S-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhC---CHHHHhhhhHHHHHHHHhCC-C-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Confidence 356788888999998876532 23445667778877743322 4 899999999999998642 111 111110
Q ss_pred -CCCHHHHHH-hh-------------CCCCHHHHHHHHHHHhhhhC-------CCchhHHHHHhcCChHHHHHHhccccc
Q 011328 115 -HGAVPIFVR-LL-------------SSPTDDVREQAVWALGNVAG-------DSPKCRDLVLSNGALMPLLAQFNEHAK 172 (488)
Q Consensus 115 -~g~i~~L~~-~L-------------~~~~~~v~~~a~~~L~~l~~-------~~~~~~~~~~~~~~l~~L~~ll~~~~~ 172 (488)
.+++..+.. ++ .+.+.+.....+..+..+.. ..+..+..+ ...++.++... ...+
T Consensus 281 ~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~-~~~d 357 (1049)
T 3m1i_C 281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIEE 357 (1049)
T ss_dssp HHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHH-TSSC
T ss_pred HHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHH-cCCc
Confidence 122222222 11 12344455555555544432 111111111 12344444444 3457
Q ss_pred HhHHHHHHHHHHHhhc----CCCCCC--hhhhhchHHHHHHhhccCC-------------------h---hHHHHHHHHH
Q 011328 173 LSMLRNATWTLSNFCR----GKPQPL--FEQTRPALPALERLIHSND-------------------D---EVLTDACWAL 224 (488)
Q Consensus 173 ~~v~~~a~~~L~~l~~----~~~~~~--~~~~~~~~~~l~~ll~~~~-------------------~---~v~~~al~~L 224 (488)
..+...++..+..++. ...... ......+++.++..+.-++ . ..+..+..+|
T Consensus 358 ~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L 437 (1049)
T 3m1i_C 358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVL 437 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHH
Confidence 7788888877777766 321111 1223444555555443210 0 1233445555
Q ss_pred HHhccCCchhHHHHHHhCCHHHHHHhcC--CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcc----cch
Q 011328 225 SYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ----NYK 298 (488)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~----~~~ 298 (488)
..++...+.. +.. -+.+.+...+. ..++..++.++++++.++.........-.-..+++.+..+... ...
T Consensus 438 ~~l~~~~~~~---~l~-~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~ 513 (1049)
T 3m1i_C 438 VYLTHLNVID---TEE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNK 513 (1049)
T ss_dssp HHHHHHCHHH---HHH-HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHH
T ss_pred HHHHccCHHH---HHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccch
Confidence 5555322211 111 12344444444 3567789999999999986543221111111344444443321 114
Q ss_pred hhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHH--------HHHH
Q 011328 299 KSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI--------KFLV 367 (488)
Q Consensus 299 ~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~--------~~l~ 367 (488)
+.++..++|+++.++. ..++. +. .+++.++..+.++++.|+..|++++.+++..+..... .++-
T Consensus 514 ~~v~~~~~~~lgry~~~~~~~~~~----l~-~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~ 588 (1049)
T 3m1i_C 514 AVVASDIMYVVGQYPRFLKAHWNF----LR-TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQ 588 (1049)
T ss_dssp HHHHHHHHHHHHHCHHHHHHCHHH----HH-HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH----HH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHH
Confidence 5566679999998875 22322 22 2567788888888899999999999999975433221 1111
Q ss_pred HCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011328 368 SQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 401 (488)
Q Consensus 368 ~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 401 (488)
.++..+..++..-+.+-.....+++..++...
T Consensus 589 --~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~ 620 (1049)
T 3m1i_C 589 --TIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1049)
T ss_dssp --HHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred --HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence 23444444555545545566677777776543
No 97
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.91 E-value=0.00062 Score=72.55 Aligned_cols=417 Identities=12% Similarity=0.109 Sum_probs=207.4
Q ss_pred hHHHHhhcCCCCChhhHHHHhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHH--HHHHcCCHHHHHHhhc-
Q 011328 7 DCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPIN--EVIQSGVVPRFIEFLS- 83 (488)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~~~i~~L~~lL~- 83 (488)
+|+..+..-.|+..++.. +.++.+.+.|.+ ++++..|+.+|..+++.. ..... .++..=.+...+..+.
T Consensus 215 ~~l~s~i~wi~~~~i~~~-----~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~-~~~~~k~~li~~l~L~~~~~~l~~ 286 (980)
T 3ibv_A 215 QVYAQWVSWININLIVNE-----PCMNLLYSFLQI--EELRCAACETMTEIVNKK-MKPLEKLNLLNILNLNLFFSKSQE 286 (980)
T ss_dssp HHHHHHTTTSCHHHHHCH-----HHHHHHHHHTTS--HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHhhcCHHhhhcc-----hHHHHHHHHcCC--hHHHHHHHHHHHHHHHcC-CChhhHHHHHHHHhHHHHHHHHhc
Confidence 444433333444444445 667777777765 789999999999999876 33222 1221101112222222
Q ss_pred -CCCChhHHHHHHHHHHHhcC------CCc-----hhhHHHH--hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCC---
Q 011328 84 -RDDFPQLQFEAAWALTNIAS------GTS-----ENTRVVI--DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD--- 146 (488)
Q Consensus 84 -~~~~~~v~~~a~~~L~~l~~------~~~-----~~~~~~~--~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~--- 146 (488)
..+ .+.....++.+..++. ..+ +.+.... -.+.++.++.++.+++.++...++..+..+...
T Consensus 287 ~~~D-~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~ 365 (980)
T 3ibv_A 287 QSTD-PNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRK 365 (980)
T ss_dssp --CC-HHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHH
T ss_pred cccc-HHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHh
Confidence 344 6666555554433321 111 1111111 125789999999998889888877777665521
Q ss_pred -------CchhHHHHHhcCChHHHHHHhcccc-----------cH----hHHHHHHHHHHHhhcC-CCCCChhhhh-chH
Q 011328 147 -------SPKCRDLVLSNGALMPLLAQFNEHA-----------KL----SMLRNATWTLSNFCRG-KPQPLFEQTR-PAL 202 (488)
Q Consensus 147 -------~~~~~~~~~~~~~l~~L~~ll~~~~-----------~~----~v~~~a~~~L~~l~~~-~~~~~~~~~~-~~~ 202 (488)
.+..+..+. ..+..+++.+...+ +. +.|.... .+...+.. .+........ .+.
T Consensus 366 ~~~~~~~~~~~~~~l~--~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~ 442 (980)
T 3ibv_A 366 ESSSKELSASLKEFLK--SLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAIT 442 (980)
T ss_dssp HTTSCCCCHHHHHHHH--HHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHH--HHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHH
Confidence 111111111 13334444442111 01 2333333 33222211 1111011001 122
Q ss_pred HHHHHhhc---cCChhHHHHHHHHHHHhccCCchhHHHHH-Hh----CCHHHHHHhcC-----CCCcchHhHHHHHHhHh
Q 011328 203 PALERLIH---SNDDEVLTDACWALSYLSDGTNDKIQAVI-EA----GVCPRLVELLR-----HPSPSVLIPALRTVGNI 269 (488)
Q Consensus 203 ~~l~~ll~---~~~~~v~~~al~~L~~l~~~~~~~~~~~~-~~----~~l~~L~~lL~-----~~~~~v~~~a~~~L~~l 269 (488)
+.+...+. +.++..++.++.+++.+++.-......+. .. .+++.+..++. .+.+.++..++++++..
T Consensus 443 ~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~ry 522 (980)
T 3ibv_A 443 SSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRY 522 (980)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence 22223332 34688899999999999876432111000 00 13345555544 56788999999999998
Q ss_pred hcCCchhhHHHhhCCChHHHHHHh------cccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHH----HhcC
Q 011328 270 VTGDDMQTQCIINHQALPCLLDLL------TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNL----LLNA 339 (488)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~L~~lL------~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~l----l~~~ 339 (488)
+..-... ...++.++..+ .++ +..++..|+.++.+++....... .+.++.++.. +...
T Consensus 523 s~~~~~~------~~~l~~~L~~ll~~~gl~~~-~~~V~~~a~~af~~f~~~~~~~L-----~~~~~~il~~l~~lL~~~ 590 (980)
T 3ibv_A 523 ASFFDYE------SAAIPALIEYFVGPRGIHNT-NERVRPRAWYLFYRFVKSIKKQV-----VNYTESSLAMLGDLLNIS 590 (980)
T ss_dssp GGGGGTC------CTTHHHHHHHHTSTTTTTCC-CTTTHHHHHHHHHHHHHHTTTTC-----SSSHHHHHHHTTGGGCCC
T ss_pred HHHHhcC------chhHHHHHHHHhccccccCC-ChhHHHHHHHHHHHHHHHhhHHh-----hhHHHHHHHHHHHhhcCc
Confidence 8744322 23455555544 345 67899999999999987322211 1223333333 3311
Q ss_pred -----C----------------hhHHHHHHHHHHHhccCC--CHHHHHHHHH---CCChHHHHhhcCCC----CHHH-HH
Q 011328 340 -----E----------------FEIKKEAAWAISNATSGG--SNEQIKFLVS---QGCIKPLCDLLNCP----DPRI-VT 388 (488)
Q Consensus 340 -----~----------------~~v~~~a~~aL~~l~~~~--~~~~~~~l~~---~~~i~~L~~ll~~~----~~~v-~~ 388 (488)
+ .+-+.....+++.++... .++......+ ...+..+..++... +... ..
T Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~ 670 (980)
T 3ibv_A 591 VSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVY 670 (980)
T ss_dssp CCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHH
T ss_pred CCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHH
Confidence 0 123455667777776432 2332222222 12233333344322 2222 23
Q ss_pred HHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc--CCCHHHHHHHHHHHHHhcCC
Q 011328 389 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS--HDNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 389 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~--~~~~~v~~~a~~~l~~~~~~ 454 (488)
..+.++.++.+...... ....++...|.+. .+.+....+ ..+..|++++...++++...
T Consensus 671 ~~i~al~~lakgf~~~~-----~~~~p~~~~f~~~--~~~il~~l~~~~~~~~irea~~~~~~r~i~~ 731 (980)
T 3ibv_A 671 CSLMAIGNFAKGFPARG-----SEEVAWLASFNKA--SDEIFLILDRMGFNEDIRGAVRFTSGRIINV 731 (980)
T ss_dssp HHHHHHHHHHHTSCSCC------CCCSHHHHHHHH--HHHHHHHHHHSCCSHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhccCCccc-----CCCCcHHHHHHHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 45566666665432211 1112245555433 444544443 45789999999999998765
No 98
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.79 E-value=0.00025 Score=67.55 Aligned_cols=255 Identities=12% Similarity=0.084 Sum_probs=149.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011328 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
....|+..|.++..++|.-|+-.|+.++...... . |-. ...+ . ..|++.++-++-+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~G-A------GR~-------~~~N-~---DLAvRLLCVLALDR----- 231 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNG-G------DIQ-------IRVD-S---KLFSKIYEILVTDK----- 231 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC-----------CC-------CCCC-T---THHHHHHHHHHHBC-----
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccC-C------cee-------cccc-H---HHHHHHHHHHHhcc-----
Confidence 3456788888899999999999999888754210 0 110 1111 1 33444444444310
Q ss_pred HHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328 111 VVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 111 ~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
+-.+.++ --..||+.|+.+|+.+ ..-+.- ..++..++..+ .....+++..++-.|..+ .+
T Consensus 232 ----------FGDYVSDqVVAPVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL-~D 292 (800)
T 3oc3_A 232 ----------FNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYL-KE 292 (800)
T ss_dssp ----------CBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHT-GG
T ss_pred ----------ccccccCeeeeehHHHHHHHHHHH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHH-HH
Confidence 0111221 2346788888888887 444331 23344444444 455677888888888877 11
Q ss_pred CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCC--cchHhHHHHHHh
Q 011328 190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS--PSVLIPALRTVG 267 (488)
Q Consensus 190 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~--~~v~~~a~~~L~ 267 (488)
--. ...++++.++..|.+.|++|+..|+.+|..++ .++... .++..+.+.|.+.+ ..-....+..|+
T Consensus 293 LL~----~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLA 361 (800)
T 3oc3_A 293 FVE----DKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLT 361 (800)
T ss_dssp GCC----CHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 111 15677888888888888888888888888888 222333 23344444443321 222334566666
Q ss_pred HhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHH
Q 011328 268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA 347 (488)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a 347 (488)
.++..... .......+|.|..++.+. -..||..++.++..+. .....+.+. .+++-..+.+++..+
T Consensus 362 kL~s~p~~---a~~dp~LVPRL~PFLRHt-ITSVR~AVL~TL~tfL--~~~~LRLIF--------QNILLE~neeIl~lS 427 (800)
T 3oc3_A 362 KIYRENPE---LSIPPERLKDIFPCFTSP-VPEVRTSILNMVKNLS--EESIDFLVA--------EVVLIEEKDEIREMA 427 (800)
T ss_dssp HHHHHCTT---CCCCSGGGGGTGGGGTCS-SHHHHHHHHHHTTTCC--CHHHHHHHH--------HHHHHCSCHHHHHHH
T ss_pred HHHcCCcc---cccChHHHHHHHhhhcCC-cHHHHHHHHHHHHHHH--hhhHHHHHH--------HHHHhCCcHHHHHHH
Confidence 66664431 112336788888888888 8889998888888776 233322222 234556677777777
Q ss_pred HHHHH
Q 011328 348 AWAIS 352 (488)
Q Consensus 348 ~~aL~ 352 (488)
..+..
T Consensus 428 ~~VWk 432 (800)
T 3oc3_A 428 IKLLK 432 (800)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76664
No 99
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.71 E-value=0.00049 Score=73.29 Aligned_cols=305 Identities=10% Similarity=0.021 Sum_probs=164.7
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC--chhhHHHHhCCCH
Q 011328 41 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT--SENTRVVIDHGAV 118 (488)
Q Consensus 41 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~g~i 118 (488)
+.++.++..++.++...++ .-....+++.+.++.+.++|.+ ++++..|+.||..+.... ++.+..++..=.+
T Consensus 204 ~~~~~l~~~~L~~l~s~i~---wi~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L 277 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVS---WININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL 277 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTT---TSCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHh---hcCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence 4778888899999999876 3456777788899999999875 789999999999998743 3333333322011
Q ss_pred HHHHHhhC--CCCHHHHHHHHHHHhhhhC------CCc-----hhHHH--HHhcCChHHHHHHhcccccHhHHHHHHHHH
Q 011328 119 PIFVRLLS--SPTDDVREQAVWALGNVAG------DSP-----KCRDL--VLSNGALMPLLAQFNEHAKLSMLRNATWTL 183 (488)
Q Consensus 119 ~~L~~~L~--~~~~~v~~~a~~~L~~l~~------~~~-----~~~~~--~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L 183 (488)
...+..+. .++.++.+..++.+..++. ..+ +.+.. -.-.+.++.++... .+++.++...++..+
T Consensus 278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~Fw 356 (980)
T 3ibv_A 278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPFL 356 (980)
T ss_dssp HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence 11222222 3667776655555544321 111 00000 01123666777777 455667766666665
Q ss_pred HHhhcCC---CC--CChhh----hhchHHHHHHhhccC-----C-----------hhHHHHHHHHHHHhccCCchhHHHH
Q 011328 184 SNFCRGK---PQ--PLFEQ----TRPALPALERLIHSN-----D-----------DEVLTDACWALSYLSDGTNDKIQAV 238 (488)
Q Consensus 184 ~~l~~~~---~~--~~~~~----~~~~~~~l~~ll~~~-----~-----------~~v~~~al~~L~~l~~~~~~~~~~~ 238 (488)
..+.... +. ..... ...+++.++.-++-+ + .+.|......+..++.-.++..-..
T Consensus 357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~ 436 (980)
T 3ibv_A 357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSY 436 (980)
T ss_dssp HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 5544321 11 11112 233444444444311 0 1233333322222222122111110
Q ss_pred HHhCCHHHHHHhcC---CCCcchHhHHHHHHhHhhcCCchhhHHH-hh----CCChHHHHHHhc-----ccchhhHHHHH
Q 011328 239 IEAGVCPRLVELLR---HPSPSVLIPALRTVGNIVTGDDMQTQCI-IN----HQALPCLLDLLT-----QNYKKSIKKEA 305 (488)
Q Consensus 239 ~~~~~l~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~----~~~~~~L~~lL~-----~~~~~~v~~~a 305 (488)
.-.-+.+.+.+.+. +.++..++.++.+++.++.+-....... -. ..+++.+..+++ .+ .+.|+..+
T Consensus 437 ~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~~~ 515 (980)
T 3ibv_A 437 MYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQLLY 515 (980)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHHHH
Confidence 00011122223332 2357788999999999987644322111 01 124455555554 44 78999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc------CChhHHHHHHHHHHHhccCCC
Q 011328 306 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN------AEFEIKKEAAWAISNATSGGS 359 (488)
Q Consensus 306 ~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~a~~aL~~l~~~~~ 359 (488)
+++++..+.--.. ....++.++..+-+ ++..|+..|+.++.+++..+.
T Consensus 516 ~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 516 MEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp HHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence 9999998872111 12355555555544 467899999999999987553
No 100
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.0024 Score=57.46 Aligned_cols=193 Identities=13% Similarity=0.117 Sum_probs=127.4
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHH-HHH--HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPIN-EVI--QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 106 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~--~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~ 106 (488)
..+| +-+.|.|.+...|..|+..+.+++......... ... -....+.+.+.+.+.+ ..++..++.++..++....
T Consensus 10 sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~ 87 (278)
T 4ffb_C 10 TTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFA 87 (278)
T ss_dssp -CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC
T ss_pred hcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhh
Confidence 4455 678899999999999999999988754222111 111 1234566777888888 8999999999998875221
Q ss_pred -----hhhHHHHhCCCHHHHHH-hhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHH
Q 011328 107 -----ENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT 180 (488)
Q Consensus 107 -----~~~~~~~~~g~i~~L~~-~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~ 180 (488)
.......-..+++.|+. .+.+..+.++..+..++..++...... .. .++.++..+ .+.++.++..++
T Consensus 88 ~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~l 160 (278)
T 4ffb_C 88 SSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAAA 160 (278)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHHH
T ss_pred hhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHHH
Confidence 11111122345677775 477888999999998888776433211 11 133455555 677899999998
Q ss_pred HHHHHhhcCCC--CC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011328 181 WTLSNFCRGKP--QP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 231 (488)
Q Consensus 181 ~~L~~l~~~~~--~~-~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 231 (488)
..|..+..... .. .......+++.+..++.+.|+.||..|..++..+-..-
T Consensus 161 ~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 161 NCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 88888765421 11 12233456677888899999999999999998876543
No 101
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.47 E-value=0.026 Score=60.24 Aligned_cols=310 Identities=12% Similarity=0.124 Sum_probs=165.5
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHH-HHhhCCCCHHHHHHHHHHHhhhhCCC-chhHHHHH
Q 011328 78 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF-VRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVL 155 (488)
Q Consensus 78 L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L-~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~ 155 (488)
+...|+...++++...++.++..... -- ....+++.+.++.+ ..+| .+++++..|+.+|..+.... ++..+.+.
T Consensus 211 l~~iL~~~~~~~lv~~~L~~L~~~~s-WI-~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~ 286 (1073)
T 3gjx_A 211 CQFVMENSQNAPLVHATLETLLRFLN-WI-PLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFE 286 (1073)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHTT-TS-CTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHH
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHH-hc-CHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHH
Confidence 33445444447888889999999987 22 23567788888888 4676 56889999999999987542 22222221
Q ss_pred hcCChHHHH----HHh------------cccccHhHHHHHHHHHHHhhcCCC-----C-CChhhhhchHHHHHHhhccCC
Q 011328 156 SNGALMPLL----AQF------------NEHAKLSMLRNATWTLSNFCRGKP-----Q-PLFEQTRPALPALERLIHSND 213 (488)
Q Consensus 156 ~~~~l~~L~----~ll------------~~~~~~~v~~~a~~~L~~l~~~~~-----~-~~~~~~~~~~~~l~~ll~~~~ 213 (488)
. ....++ ..+ ....+++.....+..+..+..... . ........++..++.+-..++
T Consensus 287 ~--lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d 364 (1073)
T 3gjx_A 287 T--LFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEE 364 (1073)
T ss_dssp H--HHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSC
T ss_pred H--HHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCc
Confidence 1 111111 111 122334555556666665544320 0 011122334444555556778
Q ss_pred hhHHHHHHHHHHHhccC----Cc-----h------------hHHHHHH---hCCHHHHHHhcCCCCc----------chH
Q 011328 214 DEVLTDACWALSYLSDG----TN-----D------------KIQAVIE---AGVCPRLVELLRHPSP----------SVL 259 (488)
Q Consensus 214 ~~v~~~al~~L~~l~~~----~~-----~------------~~~~~~~---~~~l~~L~~lL~~~~~----------~v~ 259 (488)
.++...++..-..+... .+ . ....+.. ..+...++..+..+.+ .+|
T Consensus 365 ~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~r 444 (1073)
T 3gjx_A 365 TEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVR 444 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHH
Confidence 88877777665444321 00 0 0111111 0233334444443321 011
Q ss_pred h------------HHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhccc-chhhHHHHHHHHHHHHhcC-CHH-HHHHHH
Q 011328 260 I------------PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNITAG-NVN-QIQAII 324 (488)
Q Consensus 260 ~------------~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~-~~~-~~~~l~ 324 (488)
+ ..-.++..++.-....... -..+.+.+.+..+ .++.....++|+++.++.. .++ ....+.
T Consensus 445 e~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp 520 (1073)
T 3gjx_A 445 EFMKDTDSINLYKNMRETLVYLTHLDYVDTEI----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV 520 (1073)
T ss_dssp EECSSCHHHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HHHhhcchHHHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH
Confidence 1 1111222222111111111 1223333333332 2588899999999999864 222 222233
Q ss_pred HcCChHHHHHHHhcC---C--hhHHHHHHHHHHHhccCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 011328 325 EAGIIGPLVNLLLNA---E--FEIKKEAAWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 397 (488)
Q Consensus 325 ~~~~l~~L~~ll~~~---~--~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l 397 (488)
.+++.|+.+...+ + ..++...+++++.....- .++..+ .++..|.+.+.++++.++..|+.++..+
T Consensus 521 --~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~-----~vl~~L~~~m~~~~~~vq~aA~~af~~i 593 (1073)
T 3gjx_A 521 --TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK-----TVVNKLFEFMHETHDGVQDMACDTFIKI 593 (1073)
T ss_dssp --HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTCCSTTHHHHHHHHHHHH
T ss_pred --HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3677787777654 2 234555667887765421 223222 2678888888888999999999999999
Q ss_pred HHhhhhh
Q 011328 398 LKAGEAE 404 (488)
Q Consensus 398 ~~~~~~~ 404 (488)
+..+...
T Consensus 594 ~~~C~~~ 600 (1073)
T 3gjx_A 594 AQKCRRH 600 (1073)
T ss_dssp HHHTGGG
T ss_pred HHHHHHH
Confidence 9877654
No 102
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.41 E-value=0.0029 Score=55.59 Aligned_cols=178 Identities=15% Similarity=0.070 Sum_probs=119.3
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc---ccccHhHHHHHHHHHHHhh----cCCC
Q 011328 119 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFC----RGKP 191 (488)
Q Consensus 119 ~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~~v~~~a~~~L~~l~----~~~~ 191 (488)
+.+...|-+.+..-+..++..|.......+ +.+.. .+..+++.+. .+++..+...++.+|..+. ....
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~---~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSP---RSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCH---HHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhCh---HHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 344555555566666666666666543322 12211 2222333221 3567788888887777664 2222
Q ss_pred CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011328 192 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 271 (488)
Q Consensus 192 ~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 271 (488)
.........++|.++.-+-++.+.++..+-.++..+....+.. .+++.+.+.+.+.++.+|..++..+..+..
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~-------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL-------KMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 2333334678999999999999999999888887765422211 356778888999999999999999999876
Q ss_pred CCchhhHHHhhCCCh---HHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011328 272 GDDMQTQCIINHQAL---PCLLDLLTQNYKKSIKKEACWTISNITA 314 (488)
Q Consensus 272 ~~~~~~~~~~~~~~~---~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 314 (488)
..... ....+ +.+..++.++ +..||..|..++..+-.
T Consensus 197 ~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 197 NAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred hcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 43322 23467 8999999998 99999999999997765
No 103
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.0059 Score=54.88 Aligned_cols=190 Identities=11% Similarity=0.103 Sum_probs=127.0
Q ss_pred HHHhcCCCCcchHhHHHHHHhHhhcCCchhhH--HHh--hCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC------
Q 011328 247 LVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ--CII--NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN------ 316 (488)
Q Consensus 247 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~--~~~--~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~------ 316 (488)
+-.-|.+.++..|..|+..+..+....+.... ... -....+.+...+.+. +..+...++.++..++...
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 56778999999999999999887764332111 111 123456677788888 9999999999999887621
Q ss_pred HHHHHHHHHcCChHHHHHH-HhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHH
Q 011328 317 VNQIQAIIEAGIIGPLVNL-LLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE 395 (488)
Q Consensus 317 ~~~~~~l~~~~~l~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~ 395 (488)
....... -..+++.|+.- +.+....++..+..++..++...... .. +++.+...+++.++.++..++..|.
T Consensus 93 ~~~~~~~-~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~--~~-----~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 93 NAHNITL-ISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI--TQ-----SVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp HHHHHHH-HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS--HH-----HHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred cchhHHH-HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH--HH-----HHHHHHHHHhccCHHHHHHHHHHHH
Confidence 1111122 22467777764 66777889999999888886543211 11 3567778889999999999999999
Q ss_pred HHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 011328 396 NILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEE 455 (488)
Q Consensus 396 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 455 (488)
+++....... .+ ....+. ..++.+..++++.+++||..|..++-.+|.--
T Consensus 165 ~~l~~fg~~~-------~~-~k~~l~--~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 165 ELMAAFGLTN-------VN-VQTFLP--ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHHHTTTT-------CC-HHHHHH--HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHhCCCc-------CC-chhHHH--HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 9886532110 00 122221 23566788899999999999999997777653
No 104
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.34 E-value=0.02 Score=51.44 Aligned_cols=202 Identities=15% Similarity=0.095 Sum_probs=145.2
Q ss_pred HHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch----hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011328 236 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM----QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 311 (488)
Q Consensus 236 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~----~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n 311 (488)
+.+...+++..|+..|..-+-+.|..+..+..++.+.... ....+.. -.+.+..++..-.++++-..+...|..
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRe 149 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHH
Confidence 4466678899999999888888999999999998875442 2223322 133333333333345666667777777
Q ss_pred HhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHC--CChHHHHhhcCCCCHHHHHH
Q 011328 312 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ--GCIKPLCDLLNCPDPRIVTV 389 (488)
Q Consensus 312 l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~--~~i~~L~~ll~~~~~~v~~~ 389 (488)
++.+ +...+.++..+.+..+...++.++.++...|..++..+......-...++..+ .+...+..++.+++.-++.+
T Consensus 150 cir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQ 228 (341)
T 1upk_A 150 CIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ 228 (341)
T ss_dssp HHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHH
Confidence 7766 67777788888899999999999999999999999988766533333333321 34677778999999999999
Q ss_pred HHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHH
Q 011328 390 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE 449 (488)
Q Consensus 390 al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~ 449 (488)
++..|+.++..-..... ....+.+..-+..+..++.+++..++-.|..+..
T Consensus 229 SlKLLgelLldr~N~~v---------M~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFK 279 (341)
T 1upk_A 229 SLKLLGELLLDRHNFTI---------MTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFK 279 (341)
T ss_dssp HHHHHHHHHHSGGGHHH---------HHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHH---------HHHHhCCHHHHHHHHHHhcCchhchhhhhhhhee
Confidence 99999999865443321 3555555566888888888989888888777644
No 105
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.34 E-value=0.0013 Score=57.72 Aligned_cols=178 Identities=14% Similarity=0.086 Sum_probs=119.8
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHH----hcCCCCcchHhHHHHHHhHhhcCCch---h
Q 011328 204 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE----LLRHPSPSVLIPALRTVGNIVTGDDM---Q 276 (488)
Q Consensus 204 ~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~----lL~~~~~~v~~~a~~~L~~l~~~~~~---~ 276 (488)
.+...+-+.|.+-+..++..|.......++. ++ ..++.+++ .+.+.+..+...++.+|..+...-.. .
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~---~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRS---LL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHH---HH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHH---HH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3455555667777777777777655433322 21 22233333 33467888888888888887532111 0
Q ss_pred hHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011328 277 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 355 (488)
Q Consensus 277 ~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~ 355 (488)
....-..-++|.|+.-+.++ ...+|..+-.++..+.. .++. .+++.++.-+.+.+..+|..++..+..+.
T Consensus 125 ~~~~ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li 195 (266)
T 2of3_A 125 MSQEEVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYI 195 (266)
T ss_dssp CCHHHHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 01111134789999999888 88899888877776654 2232 25667778888899999999999999997
Q ss_pred cCCCHHHHHHHHHCCCh---HHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011328 356 SGGSNEQIKFLVSQGCI---KPLCDLLNCPDPRIVTVCLEGLENILKAG 401 (488)
Q Consensus 356 ~~~~~~~~~~l~~~~~i---~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 401 (488)
...... ....+ +.+..++.++|..+|..|+.++..+....
T Consensus 196 ~~~G~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 196 TNAGIS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp HHHCSG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 532222 23568 99999999999999999999998887553
No 106
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.29 E-value=0.043 Score=49.31 Aligned_cols=225 Identities=10% Similarity=0.091 Sum_probs=160.2
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccCCch----hHHHHHH-hCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCC
Q 011328 199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTND----KIQAVIE-AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD 273 (488)
Q Consensus 199 ~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~----~~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 273 (488)
.+.+..++..+..-+-+.+..+..+..++.....+ ..+.+.+ .+++..|+..-. ++++...+-..|...+. .
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRecir-~ 153 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECIR-H 153 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHHT-S
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHHHHH-h
Confidence 56788888888888999999999999988865432 2233332 234444444443 45566666666666666 5
Q ss_pred chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcC---ChHHHHHHHhcCChhHHHHHHHH
Q 011328 274 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG---IIGPLVNLLLNAEFEIKKEAAWA 350 (488)
Q Consensus 274 ~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~---~l~~L~~ll~~~~~~v~~~a~~a 350 (488)
+...+.++....+..+.+.++.+ +.++...|..++..+..........++..+ ++...-.++.+++.-.|.+++..
T Consensus 154 e~la~~iL~~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL 232 (341)
T 1upk_A 154 EPLAKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL 232 (341)
T ss_dssp HHHHHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 56677778888888999999999 999999999999988876566666666533 57777889999999999999999
Q ss_pred HHHhccCCC--HHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhh--ccH
Q 011328 351 ISNATSGGS--NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA--EGL 426 (488)
Q Consensus 351 L~~l~~~~~--~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~ 426 (488)
|+.+..... .-..+++.+..-+..++.+|+++...++..|...+.-++....+.. ++...+..+ ..+
T Consensus 233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~---------~I~~IL~~Nr~kLl 303 (341)
T 1upk_A 233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQ---------PILDILLKNQAKLI 303 (341)
T ss_dssp HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCH---------HHHHHHHHTHHHHH
T ss_pred HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCCh---------HHHHHHHHHHHHHH
Confidence 999987532 2234455555679999999999999999999888876665433322 245555433 345
Q ss_pred HHHHHhhcCC
Q 011328 427 EKIENLQSHD 436 (488)
Q Consensus 427 ~~L~~l~~~~ 436 (488)
+.|..+..+.
T Consensus 304 ~fl~~f~~d~ 313 (341)
T 1upk_A 304 EFLSKFQNDR 313 (341)
T ss_dssp HHHHHTTTTC
T ss_pred HHHHhCCCCC
Confidence 5566665443
No 107
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.27 E-value=0.028 Score=60.00 Aligned_cols=297 Identities=12% Similarity=0.121 Sum_probs=156.6
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHH-HHhhcCCCChhHHHHHHHHHHHhcCCC-chhhHHHHh--CC
Q 011328 41 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF-IEFLSRDDFPQLQFEAAWALTNIASGT-SENTRVVID--HG 116 (488)
Q Consensus 41 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L-~~lL~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~--~g 116 (488)
+.++++...++.++..+++ .-....+++.+.++.+ ..+|. + ++++..|+.||..+.... ++....+.. ..
T Consensus 218 ~~~~~lv~~~L~~L~~~~s---WI~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~ 291 (1073)
T 3gjx_A 218 SQNAPLVHATLETLLRFLN---WIPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL 291 (1073)
T ss_dssp CCCHHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHH---hcCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 4677777788888888765 3346778888999988 46664 3 789999999999988632 222222211 11
Q ss_pred CHHHHHHhh-------------CCCCHHHHHHHHHHHhhhhCCC-------chhHHHHHhcCChHHHHHHhcccccHhHH
Q 011328 117 AVPIFVRLL-------------SSPTDDVREQAVWALGNVAGDS-------PKCRDLVLSNGALMPLLAQFNEHAKLSML 176 (488)
Q Consensus 117 ~i~~L~~~L-------------~~~~~~v~~~a~~~L~~l~~~~-------~~~~~~~~~~~~l~~L~~ll~~~~~~~v~ 176 (488)
++..+..++ ...+.+.....+..+..+.+.. ++.+..+.. ++..++..- ..++.++.
T Consensus 292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~--~l~~ll~~s-~~~d~ei~ 368 (1073)
T 3gjx_A 292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALME--ALHYMLLVS-EVEETEIF 368 (1073)
T ss_dssp HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHH--HHHHHHHHT-TCSCHHHH
T ss_pred HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHH--HHHHHHHHh-CCCcHHHH
Confidence 222222222 1123455555566666554321 111111111 223333333 44577777
Q ss_pred HHHHHHHHHhhcC----CCC----C-------------ChhhhhchHHHHH----HhhccCC------------------
Q 011328 177 RNATWTLSNFCRG----KPQ----P-------------LFEQTRPALPALE----RLIHSND------------------ 213 (488)
Q Consensus 177 ~~a~~~L~~l~~~----~~~----~-------------~~~~~~~~~~~l~----~ll~~~~------------------ 213 (488)
..+...-..|... .+. . ......+++..+. .-+..++
T Consensus 369 kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~ 448 (1073)
T 3gjx_A 369 KICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMK 448 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECS
T ss_pred HHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHh
Confidence 7666554433321 110 0 0011123333333 3332221
Q ss_pred --h-----hHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC--CCcchHhHHHHHHhHhhcCCchh-hHHHhhC
Q 011328 214 --D-----EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQ-TQCIINH 283 (488)
Q Consensus 214 --~-----~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~ 283 (488)
. ++...++..+.++.. .+... -.++.+.+.+.. .++...++++++++.++..-... -..++.
T Consensus 449 d~~~~~ly~~mrd~L~~lt~l~~--~~~~~-----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp- 520 (1073)
T 3gjx_A 449 DTDSINLYKNMRETLVYLTHLDY--VDTEI-----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV- 520 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCH--HHHHH-----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-
T ss_pred hcchHHHHHHHHHHHHHHhcCCH--HHHHH-----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH-
Confidence 0 112223222222211 11111 123344444443 35778899999999998543322 112222
Q ss_pred CChHHHHHHhcccc----hhhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011328 284 QALPCLLDLLTQNY----KKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 284 ~~~~~L~~lL~~~~----~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
.+++.|+.+..++. ...++...+|+++.... .+++... .++..|++.+..+++.|+..|+.++..++.
T Consensus 521 ~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~-----~vl~~L~~~m~~~~~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 521 TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK-----TVVNKLFEFMHETHDGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTCCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 45666666664431 22355566789988765 2333222 256678888888899999999999999987
Q ss_pred CCC
Q 011328 357 GGS 359 (488)
Q Consensus 357 ~~~ 359 (488)
.+.
T Consensus 596 ~C~ 598 (1073)
T 3gjx_A 596 KCR 598 (1073)
T ss_dssp HTG
T ss_pred HHH
Confidence 653
No 108
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.25 E-value=0.00091 Score=63.87 Aligned_cols=246 Identities=14% Similarity=0.101 Sum_probs=157.8
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhc--CChHHHHHHhc--c-------cccHhHHHHHHHHHHH
Q 011328 117 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN--GALMPLLAQFN--E-------HAKLSMLRNATWTLSN 185 (488)
Q Consensus 117 ~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~l~~L~~ll~--~-------~~~~~v~~~a~~~L~~ 185 (488)
+.+.|+.-|-++..++|..|+.+|..+.............. ...-.++-.+. + ..-..||+.++.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 45677777778999999999999999864332100000011 22223333321 1 1124799999999999
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHH
Q 011328 186 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265 (488)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~ 265 (488)
+ ..-+.. ..++..++..+..+.++++..++-.|.++.. .... . .++++.++..|.+.+++|+..|+.+
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~D----LL~~-L-d~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLKE----FVED-K-DGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGG----GCCC-H-HHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHHH----HHHH-H-HHHHHHHHhhcCCcccHHHHHHHHH
Confidence 9 544433 3455555566678899999999999999821 1111 1 2667888899999999999999999
Q ss_pred HhHhhcCCchhhHHHhhCCChHHHHHHhcccchh-hHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 011328 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK-SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK 344 (488)
Q Consensus 266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~-~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 344 (488)
|.-++ .+.... .++..+.+.|.+-++- .-....+..|+.++..... .-.....+|.|..++.+.-..||
T Consensus 323 LiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSVR 392 (800)
T 3oc3_A 323 LCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEVR 392 (800)
T ss_dssp HTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHHH
T ss_pred hhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHHH
Confidence 99998 222222 3455666666543121 1223344556665553211 00112578999999999999999
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHH
Q 011328 345 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE 395 (488)
Q Consensus 345 ~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~ 395 (488)
..++.+|..+. .....+.+. .+++-+++++++..+..+..
T Consensus 393 ~AVL~TL~tfL---~~~~LRLIF--------QNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 393 TSILNMVKNLS---EESIDFLVA--------EVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHTTTCC---CHHHHHHHH--------HHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hhhHHHHHH--------HHHHhCCcHHHHHHHHHHHH
Confidence 99999999887 223333332 25666788888888887774
No 109
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.20 E-value=0.015 Score=49.84 Aligned_cols=186 Identities=11% Similarity=0.133 Sum_probs=124.3
Q ss_pred ChhHHHHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHh-------cCCCCc-----chHhHHHHHHhHhhcCCchhhHH
Q 011328 213 DDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVEL-------LRHPSP-----SVLIPALRTVGNIVTGDDMQTQC 279 (488)
Q Consensus 213 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~l-------L~~~~~-----~v~~~a~~~L~~l~~~~~~~~~~ 279 (488)
+++.++.|+.-|+.--+..++....+... |.+..|++= +..+.- .-.-.|+..+-.++. .++.+..
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhH
Confidence 45568888777766444444444444443 544444322 222211 112345555666666 5667788
Q ss_pred HhhCCChHHHHHHhccc----chhhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHh
Q 011328 280 IINHQALPCLLDLLTQN----YKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 354 (488)
Q Consensus 280 ~~~~~~~~~L~~lL~~~----~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l 354 (488)
++++++.-.|..+|+.. ..+.+|-.++++++.+.. .+++.+..+.+.+++|..++.++.++.-.|..|...+..+
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 88989888888888543 246789999999999998 6789999999999999999999999999999999999998
Q ss_pred ccCCCHHHHHHHHHC--------CChHHHH-hhcCCCCHHHHHHHHHHHHHHHHhh
Q 011328 355 TSGGSNEQIKFLVSQ--------GCIKPLC-DLLNCPDPRIVTVCLEGLENILKAG 401 (488)
Q Consensus 355 ~~~~~~~~~~~l~~~--------~~i~~L~-~ll~~~~~~v~~~al~~L~~l~~~~ 401 (488)
.... ....++.+. .++..++ .+.+++++.+.++++.+..++....
T Consensus 173 L~dd--~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ 226 (268)
T 2fv2_A 173 LLDD--TGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP 226 (268)
T ss_dssp HHSH--HHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred hccc--hhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence 8643 344433221 1222222 3445677888888887777775443
No 110
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=96.97 E-value=0.082 Score=47.39 Aligned_cols=313 Identities=18% Similarity=0.191 Sum_probs=175.2
Q ss_pred HHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc
Q 011328 92 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA 171 (488)
Q Consensus 92 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~ 171 (488)
..+...|.-+. .++...+-+++.+++..+.....-++.++.+..+..|...+....-+...+ .+.++.++..+..++
T Consensus 261 tR~FDLL~LLm-HdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h~ 337 (619)
T 3c2g_A 261 IRTFDLLGLLL-HDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIHP 337 (619)
T ss_dssp HHHHHHHHHHC-CSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHh-cccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccCC
Confidence 34444444444 478888889999999999999999999999999999988864332221111 235788888888888
Q ss_pred cHhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccC-------ChhHHHHHH-------HHHHHhcc------C
Q 011328 172 KLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN-------DDEVLTDAC-------WALSYLSD------G 230 (488)
Q Consensus 172 ~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~-------~~~v~~~al-------~~L~~l~~------~ 230 (488)
+.++.......|+|..... +.+......++++.+...+... +..-+..+| +++.|..- +
T Consensus 338 eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~N 417 (619)
T 3c2g_A 338 DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPN 417 (619)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTT
T ss_pred CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCC
Confidence 9999999999999998877 5555566678888888776521 233334444 44444321 0
Q ss_pred ------CchhHH---HHHHhCCHHHHHHhcCCCC------cchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcc
Q 011328 231 ------TNDKIQ---AVIEAGVCPRLVELLRHPS------PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 295 (488)
Q Consensus 231 ------~~~~~~---~~~~~~~l~~L~~lL~~~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~ 295 (488)
.+...+ .+++.+++..|+.+|.-+. -++|...++..--+.+ .+..-+ ++ ++...++
T Consensus 418 Gqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlR-TP~~Pk-----d~---~l~VtDd 488 (619)
T 3c2g_A 418 GETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLR-TPFVPK-----DG---VLNVIDE 488 (619)
T ss_dssp SCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHT-CTTSCC-----TT---GGGCCCT
T ss_pred CccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhc-CCCCch-----hh---hccccch
Confidence 111112 2344466777777775532 2455555555444443 221111 11 1111111
Q ss_pred cch----hhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCC
Q 011328 296 NYK----KSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQG 370 (488)
Q Consensus 296 ~~~----~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~ 370 (488)
-.. ..+..+-+|+.+.=.. ...+..+.+++. .+..|+.++..-..+. +.+..+..
T Consensus 489 ~rk~NLvGHIciA~sWa~~Q~tNertqdTkqQLiER-~fSLL~~LmEQc~~E~--qVAh~~Ys----------------- 548 (619)
T 3c2g_A 489 NRKENLIGHICAAYSWVFRQPNNTRTQSTKQQLVER-TISLLLVLMEQCGAEK--EVAQYSYS----------------- 548 (619)
T ss_dssp TTCCCHHHHHHHHHHHHHHSCCCTTTHHHHHHHHHH-HHHHHHHHHHHTTCHH--HHHHTTTT-----------------
T ss_pred hhhhhhHHHHHHHHHHhhcCccccchhhHHHHHHHH-HHHHHHHHHHHhhhHH--HHHhheee-----------------
Confidence 101 1223333444443322 234555555553 5556666655432221 11221111
Q ss_pred ChHHHHhhcCCC--CHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHH
Q 011328 371 CIKPLCDLLNCP--DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 448 (488)
Q Consensus 371 ~i~~L~~ll~~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l 448 (488)
++.=.++++.. .|.....++..=..+++.++..... -. ---.-++-+.++.|+++.+.|..++
T Consensus 549 -IsCPLnlLn~nQ~KP~FI~NVL~VcDKILeHcP~~Ad~------------W~--i~r~tle~l~NHsNsDIa~aasSLL 613 (619)
T 3c2g_A 549 -IDCPLNLLNGNQVKPTFIHNVLVVCDKILEHCPTRADI------------WT--IDRPMLEGLTNHRNSDIAKAANSLL 613 (619)
T ss_dssp -SCCGGGGGSSCCCCHHHHHHHHHHHHHHHHHCTTHHHH------------SC--CCHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred -ccCchhhhcccccChHHHHHHHHHHHHHHHhCcchhcc------------ce--echHHHHHHhcCCCchHHHHHHHHH
Confidence 22223556543 3556666666666666655432110 00 0023356677999999999999988
Q ss_pred HHh
Q 011328 449 ETY 451 (488)
Q Consensus 449 ~~~ 451 (488)
.++
T Consensus 614 ~rf 616 (619)
T 3c2g_A 614 SRF 616 (619)
T ss_dssp TTS
T ss_pred HhC
Confidence 876
No 111
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.93 E-value=0.00044 Score=60.40 Aligned_cols=64 Identities=13% Similarity=0.020 Sum_probs=39.5
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 011328 37 AGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG 116 (488)
Q Consensus 37 ~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 116 (488)
.+++++++.++..++..+. ...+..++++++ +.||..++..+ .
T Consensus 57 ~ll~d~~~~VR~~AA~~l~-------------------~~~l~~L~~D~~-~~VR~~aA~~L---~-------------- 99 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYSP-------------------VEALTPLIRDSD-EVVRRAVAYRL---P-------------- 99 (244)
T ss_dssp GGTTCSSHHHHHHHHTTSC-------------------GGGGGGGTTCSS-HHHHHHHHTTS---C--------------
T ss_pred HHhcCCCHHHHHHHHHhCC-------------------HHHHHHHccCcC-HHHHHHHHHHC---C--------------
Confidence 4456788999988877431 123556667777 77777777532 0
Q ss_pred CHHHHHHhhCCCCHHHHHHHHH
Q 011328 117 AVPIFVRLLSSPTDDVREQAVW 138 (488)
Q Consensus 117 ~i~~L~~~L~~~~~~v~~~a~~ 138 (488)
.+.|..+++++++.+|..++.
T Consensus 100 -~~~L~~ll~D~d~~VR~~aA~ 120 (244)
T 1lrv_A 100 -REQLSALMFDEDREVRITVAD 120 (244)
T ss_dssp -SGGGGGTTTCSCHHHHHHHHH
T ss_pred -HHHHHHHHcCCCHHHHHHHHH
Confidence 134555666677777766665
No 112
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.92 E-value=0.00059 Score=59.61 Aligned_cols=88 Identities=17% Similarity=0.069 Sum_probs=57.3
Q ss_pred HhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCC
Q 011328 80 EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA 159 (488)
Q Consensus 80 ~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 159 (488)
.++.+++ +.+|..++..+ ....+..+++++++.+|..++..+.
T Consensus 57 ~ll~d~~-~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L~------------------ 99 (244)
T 1lrv_A 57 QYLADPF-WERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRLP------------------ 99 (244)
T ss_dssp GGTTCSS-HHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTSC------------------
T ss_pred HHhcCCC-HHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHCC------------------
Confidence 5567777 89999988843 1234677888999999999886421
Q ss_pred hHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHH
Q 011328 160 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACW 222 (488)
Q Consensus 160 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~ 222 (488)
...+..++ .+++..|+..++..+ . .+.+..++++++..|+..+..
T Consensus 100 ~~~L~~ll-~D~d~~VR~~aA~~l---~--------------~~~L~~L~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 100 REQLSALM-FDEDREVRITVADRL---P--------------LEQLEQMAADRDYLVRAYVVQ 144 (244)
T ss_dssp SGGGGGTT-TCSCHHHHHHHHHHS---C--------------TGGGGGGTTCSSHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHhC---C--------------HHHHHHHHcCCCHHHHHHHHH
Confidence 02233444 677777877777632 1 012445566777777777765
No 113
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.87 E-value=0.3 Score=46.15 Aligned_cols=291 Identities=12% Similarity=0.051 Sum_probs=167.0
Q ss_pred CCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHH
Q 011328 85 DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL 164 (488)
Q Consensus 85 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 164 (488)
++ +..+.-|+..|......-|+..+.- +..++.++++++..+|..|++.|..+|.+ . .... +...|.
T Consensus 40 g~-~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcEDed~~IR~qaik~Lp~~ck~-~-~i~k-----iaDvL~ 106 (507)
T 3u0r_A 40 GG-TKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCEDEDVSIRRQAIKELPQFATG-E-NLPR-----VADILT 106 (507)
T ss_dssp SC-HHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTCSSHHHHHHHHHHGGGGCCT-T-CHHH-----HHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhhHHHhhh-h-hhhh-----HHHHHH
Confidence 34 7999999999999999888877754 78999999999999999999999999987 3 2222 356788
Q ss_pred HHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC-CchhHHHHHHhCC
Q 011328 165 AQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGV 243 (488)
Q Consensus 165 ~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~-~~~~~~~~~~~~~ 243 (488)
++| +..++.-...+-.+|..+...++ .+.+..+...+.++++.+|+.++..|..-... ..+....-++.-+
T Consensus 107 QlL-qtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i 178 (507)
T 3u0r_A 107 QLL-QTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELI 178 (507)
T ss_dssp HHT-TCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHH
T ss_pred HHH-hccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHH
Confidence 888 56666666666677776665431 34555666666667899999999888653321 1111112222234
Q ss_pred HHHHHHhcCCCCcchHhHHHHHHhHhhcCCc-hhhHHHhhCCChHHHHHHh------cccchhhHHHHHHHHHHHH----
Q 011328 244 CPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLDLL------TQNYKKSIKKEACWTISNI---- 312 (488)
Q Consensus 244 l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~lL------~~~~~~~v~~~a~~~L~nl---- 312 (488)
+..+.+.|.+-...--...+.+|..+-.... ...+. +++.+.... ... +.+.-.....++..-
T Consensus 179 ~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qe-----Lv~ii~eQa~L~~~f~~s-D~e~vdRlI~C~~~ALP~F 252 (507)
T 3u0r_A 179 LTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQ-----LVELVAEQADLEQTFNPS-DPDCVDRLLQCTRQAVPLF 252 (507)
T ss_dssp HHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHH-----HHHHHHHHHTTTSCCCSS-CHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHH-----HHHHHHHHHhccCCCCCc-CHHHHHHHHHHHHHHHHHh
Confidence 4556666755443333444555554443222 11111 223333332 112 333333333333222
Q ss_pred hc--CCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccCCC-HHHHHHHHHCCChHHHHhhcCCCC-----
Q 011328 313 TA--GNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGS-NEQIKFLVSQGCIKPLCDLLNCPD----- 383 (488)
Q Consensus 313 ~~--~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~~~~i~~L~~ll~~~~----- 383 (488)
+. ++......+.+ +++|.+-.+-... .++.+...+.+++.++...+ .+.....+. .+...|..++-.+.
T Consensus 253 S~~v~StkFv~y~~~-kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~-~iy~~L~~ymP~~p~~~~~ 330 (507)
T 3u0r_A 253 SKNVHSTRFVTYFCE-QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLR-KLFDKLLEYMPLPPEEAEN 330 (507)
T ss_dssp BTTBCCHHHHHHHHH-HTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHH-HHHHHHHTTSCCCC-----
T ss_pred ccCCChHHHHHHHHH-hhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHH-HHHHHHHHHCCCCcccccc
Confidence 22 34454455544 4777544332221 23478888999999987765 232222221 13444444443221
Q ss_pred --------H----HHHHHHHHHHHHHHHhhhhh
Q 011328 384 --------P----RIVTVCLEGLENILKAGEAE 404 (488)
Q Consensus 384 --------~----~v~~~al~~L~~l~~~~~~~ 404 (488)
+ .-++..+.+++.+....+..
T Consensus 331 ~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~ 363 (507)
T 3u0r_A 331 GENAGNEEPKLQFSYVECLLYSFHQLGRKLPDF 363 (507)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHTTCTHH
T ss_pred cccccccCcccchhHHHHHHHHHHHHhhhChhh
Confidence 1 23466777778777655443
No 114
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.85 E-value=0.045 Score=47.00 Aligned_cols=160 Identities=11% Similarity=0.175 Sum_probs=114.3
Q ss_pred hccHHHHHHHhcCCC-----------HHHHH-HHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCC----ChhHHH
Q 011328 29 LESLPAMVAGVWSDD-----------RNIQL-DATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD----FPQLQF 92 (488)
Q Consensus 29 ~~~i~~l~~~L~s~~-----------~~~~~-~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~----~~~v~~ 92 (488)
.|.+..|++.+-+-. ..-|. .|+..|..+++ + ++....+++..+.-.|..+|+..+ .+.+|.
T Consensus 43 ~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-h-petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRL 120 (268)
T 2fv2_A 43 FGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-H-PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRL 120 (268)
T ss_dssp TTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-C-TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-C-cchhhHHHHccchHHhhhhhccccCCCcchhhhh
Confidence 366666666553221 22233 44555556665 3 688899999988888888886544 256899
Q ss_pred HHHHHHHHhcC-CCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHH-------HhcCChHHHH
Q 011328 93 EAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV-------LSNGALMPLL 164 (488)
Q Consensus 93 ~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-------~~~~~l~~L~ 164 (488)
.++.+++.+.+ ++++....+.+.+++|..++.++.+++-.+..|..++..+..++.+..... .-...+..++
T Consensus 121 tsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV 200 (268)
T 2fv2_A 121 TSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMV 200 (268)
T ss_dssp HHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHH
Confidence 99999999987 567888888999999999999999999999999999988875544322111 1112455555
Q ss_pred HHhcccccHhHHHHHHHHHHHhhcCC
Q 011328 165 AQFNEHAKLSMLRNATWTLSNFCRGK 190 (488)
Q Consensus 165 ~ll~~~~~~~v~~~a~~~L~~l~~~~ 190 (488)
..+.+..++.+.++++.+-..|+.+.
T Consensus 201 ~~l~~~ps~RLLKhiircYlRLsdn~ 226 (268)
T 2fv2_A 201 LQLSKEPSARLLKHVVRCYLRLSDNP 226 (268)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred HHHhcCCChHHHHHHHHHHHHHhcCH
Confidence 55656778888888888888888764
No 115
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.78 E-value=0.092 Score=49.56 Aligned_cols=149 Identities=17% Similarity=0.119 Sum_probs=104.4
Q ss_pred CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHH
Q 011328 128 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 207 (488)
Q Consensus 128 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ 207 (488)
+++..+..|+..+.....+-|+.++. ++..++.++ .+.|..+|..|+..|..+|.+ .....+...|.+
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q 107 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ 107 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence 57899999999999999888876655 567889999 888999999999999999987 336788899999
Q ss_pred hhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC-CchhhHHHhhCCCh
Q 011328 208 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG-DDMQTQCIINHQAL 286 (488)
Q Consensus 208 ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~ 286 (488)
+|.++++.-...+-.+|..+...++. +.+..+...+..+++.+|+.++..|..=... .......-.+.-+.
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~ 179 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELIL 179 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHH
Confidence 99998877777777777776654432 2233444444445788999888887554332 11111122233345
Q ss_pred HHHHHHhccc
Q 011328 287 PCLLDLLTQN 296 (488)
Q Consensus 287 ~~L~~lL~~~ 296 (488)
..+.++|++-
T Consensus 180 ~~ikK~L~DV 189 (507)
T 3u0r_A 180 TESKKVLEDV 189 (507)
T ss_dssp HHHHHHTTSC
T ss_pred HHHHHHhccc
Confidence 5566666544
No 116
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.34 E-value=0.035 Score=47.23 Aligned_cols=143 Identities=10% Similarity=0.042 Sum_probs=101.9
Q ss_pred HHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHH-hhccCChhHHHHHHHHHHHhcc-CCchhHHHHH
Q 011328 162 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER-LIHSNDDEVLTDACWALSYLSD-GTNDKIQAVI 239 (488)
Q Consensus 162 ~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~-ll~~~~~~v~~~al~~L~~l~~-~~~~~~~~~~ 239 (488)
.+...|.++...+++..|+.+|..+ . .....++.+.. +..+++..|++.+..++..++. ..++
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------ 138 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------ 138 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT------
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH------
Confidence 4555555677779999999988877 2 22457777777 5556789999999999998874 3332
Q ss_pred HhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHH
Q 011328 240 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ 319 (488)
Q Consensus 240 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~ 319 (488)
..++.+.....++++.+|+.|...+.-.+.. +... .....+++.+-.+..++ +.-||+...|.|..++..+|+-
T Consensus 139 --~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k--~dp~~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 139 --KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFK--ENPNEAIRRIADLKEDV-SEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp --TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTT--TCHHHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred --HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhh--cCHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhCHHH
Confidence 2567788899999999999998877554432 1110 00112455555555666 8999999999999999988987
Q ss_pred HHHHHH
Q 011328 320 IQAIIE 325 (488)
Q Consensus 320 ~~~l~~ 325 (488)
...+++
T Consensus 213 V~~~~~ 218 (240)
T 3l9t_A 213 VKIELK 218 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666655
No 117
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=96.24 E-value=0.034 Score=48.26 Aligned_cols=141 Identities=15% Similarity=0.094 Sum_probs=98.2
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCC----HH-HHH------H
Q 011328 298 KKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS----NE-QIK------F 365 (488)
Q Consensus 298 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~----~~-~~~------~ 365 (488)
+......++.+|..+... ......++. .+.+..+...+.++++.++..++..|..++...+ .+ ... .
T Consensus 67 ~~~~~~~~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~ 145 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 145 (233)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC-hHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 456677888888888764 555566654 5578888888888899999999988888776542 11 111 1
Q ss_pred HHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHH
Q 011328 366 LVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 444 (488)
Q Consensus 366 l~~~~~i~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a 444 (488)
..+..-...+++.++ ..+.+.+..++..+..++...+.... .-..+..|...|..+.+..+...+++++..+-
T Consensus 146 ~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~------R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi 219 (233)
T 2f31_A 146 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF------RVHIRSELMRLGLHQVLQELREIENEDMKVQL 219 (233)
T ss_dssp HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH------HHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHH
T ss_pred hCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHH------HHHHHHHHHHCChHHHHHHHhccCCHHHHHHH
Confidence 123345667787777 45567788888888877766543321 22357778899999999999988888886553
Q ss_pred H
Q 011328 445 V 445 (488)
Q Consensus 445 ~ 445 (488)
.
T Consensus 220 ~ 220 (233)
T 2f31_A 220 C 220 (233)
T ss_dssp H
T ss_pred H
Confidence 3
No 118
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.22 E-value=0.14 Score=43.56 Aligned_cols=145 Identities=17% Similarity=0.082 Sum_probs=104.3
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHH-hhCCCCHHHHHHHHHHHhhhhC-CCchhH
Q 011328 74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAG-DSPKCR 151 (488)
Q Consensus 74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-~L~~~~~~v~~~a~~~L~~l~~-~~~~~~ 151 (488)
.++....+.+++. .++|..|+..|+.. ... ...++.+.. +-..++..|++.+..++..++. ..++
T Consensus 72 ~~~la~~L~~~~~-deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-- 138 (240)
T 3l9t_A 72 IKKLAFLAYQSDV-YQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-- 138 (240)
T ss_dssp HHHHHHHHHTCSS-HHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHhCcc-hHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence 3445556667777 89999999998888 311 124666666 5556899999999999999984 3332
Q ss_pred HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011328 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 231 (488)
Q Consensus 152 ~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 231 (488)
..++.+.... .+++..+++.|+..+.--+.. + ........+++.+-.+..+++.-|+..+.+.|..++..+
T Consensus 139 ------~~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 139 ------KALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp ------TTHHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred ------HHHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence 1455566666 888999999999877554432 1 112233457777777888889999999999999999998
Q ss_pred chhHHHHHH
Q 011328 232 NDKIQAVIE 240 (488)
Q Consensus 232 ~~~~~~~~~ 240 (488)
++....+++
T Consensus 210 Pd~V~~~~~ 218 (240)
T 3l9t_A 210 PDLVKIELK 218 (240)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877665554
No 119
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=96.07 E-value=2 Score=46.94 Aligned_cols=299 Identities=8% Similarity=0.036 Sum_probs=168.4
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhc-CCCChhHHHHHHHHHHHhcCC----
Q 011328 32 LPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS-RDDFPQLQFEAAWALTNIASG---- 104 (488)
Q Consensus 32 i~~l~~~L~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~~v~~~a~~~L~~l~~~---- 104 (488)
+..+++.+.++ +...|.+|-..|.++-... .....+...|. .+.++.+|..|+..|.+....
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p-----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~ 81 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC-----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNG 81 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC-----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc-----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhccc
Confidence 44455444444 6778888888888754321 23344444343 333389999999999887642
Q ss_pred -CchhhHHHHhCCCHHHHHHhhCC---CCHHHHHHHHHHHhhhhCCC-chhHHHHHhcCChHHHHHHhcccccHhHHHHH
Q 011328 105 -TSENTRVVIDHGAVPIFVRLLSS---PTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNA 179 (488)
Q Consensus 105 -~~~~~~~~~~~g~i~~L~~~L~~---~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a 179 (488)
.++.+..+ +..+++.+...... ....++...+.+++.++... +... .+.++.++..+ .. ++.....+
T Consensus 82 l~~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W-----p~ll~~L~~~~-~~-~~~~~e~~ 153 (1204)
T 3a6p_A 82 MSRLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW-----PDMLIELDTLS-KQ-GETQTELV 153 (1204)
T ss_dssp SCHHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHHHH-HT-CHHHHHHH
T ss_pred CCHHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHh-cC-CHHHHHHH
Confidence 23333333 33445554443221 46889999999999887432 1100 13566777777 32 44556778
Q ss_pred HHHHHHhhcCC---CCCChhh-----------hhchHHHHHHhhcc-------------------CChhHHHHHHHHHHH
Q 011328 180 TWTLSNFCRGK---PQPLFEQ-----------TRPALPALERLIHS-------------------NDDEVLTDACWALSY 226 (488)
Q Consensus 180 ~~~L~~l~~~~---~~~~~~~-----------~~~~~~~l~~ll~~-------------------~~~~v~~~al~~L~~ 226 (488)
+.+|..++... ....... ...+++.+..++.+ .+..+...++.++.+
T Consensus 154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~ 233 (1204)
T 3a6p_A 154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG 233 (1204)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence 88888876542 1111100 11334444444432 124567778888877
Q ss_pred hccCCchhHHHHHHhC--CHHHHHHhcCCCCcchHhHHHHHHhHhhcCCc--hhhHHHhhC---CChHHHHHHhc-----
Q 011328 227 LSDGTNDKIQAVIEAG--VCPRLVELLRHPSPSVLIPALRTVGNIVTGDD--MQTQCIINH---QALPCLLDLLT----- 294 (488)
Q Consensus 227 l~~~~~~~~~~~~~~~--~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~---~~~~~L~~lL~----- 294 (488)
....-+. ..+.+.. +++.+..++. +++++..|+.+|..++.... .....++.. ..+..++..+.
T Consensus 234 ~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~ 309 (1204)
T 3a6p_A 234 YIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGG 309 (1204)
T ss_dssp TTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCC
T ss_pred HHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence 6654331 2233432 6777776665 46799999999999997542 222222221 11233444431
Q ss_pred --ccchhhHHHHHHHHHHHHhcCCHHHHHHHHH-----------cCChHHHHHHHhcCChhHHHHHHHHHHHhccC
Q 011328 295 --QNYKKSIKKEACWTISNITAGNVNQIQAIIE-----------AGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 357 (488)
Q Consensus 295 --~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-----------~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 357 (488)
+..+.++.+..+..+..+... ...++. .++++.++.+..+++..+-..++.....+...
T Consensus 310 ~~~e~d~e~~k~l~~ll~~lg~~----l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 310 GLVEKHYVFLKRLCQVLCALGNQ----LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHH----HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred CCccHHHHHHHHHHHHHHHHHHH----HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 222456677777777776521 222221 13577888888888877777777766656544
No 120
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=95.96 E-value=0.082 Score=47.38 Aligned_cols=162 Identities=14% Similarity=0.172 Sum_probs=113.5
Q ss_pred HHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccc
Q 011328 218 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY 297 (488)
Q Consensus 218 ~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~ 297 (488)
..+...| ++.-++++.++-+++.+++..+......++.++.++.+..|...+....-... - -...+|.++..+.-..
T Consensus 261 tR~FDLL-~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t-~-L~e~LPFi~~~i~~h~ 337 (619)
T 3c2g_A 261 IRTFDLL-GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT-P-LENILPFLLRLIEIHP 337 (619)
T ss_dssp HHHHHHH-HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS-C-CTTHHHHHHHHHHHCC
T ss_pred HHHHHHH-HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc-c-ccccchHHHHHhccCC
Confidence 3344444 44455667788899999999999999999999999999999888764322111 1 1256788888776444
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-------ChhHHH-------HHHHHHHHhcc------C
Q 011328 298 KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-------EFEIKK-------EAAWAISNATS------G 357 (488)
Q Consensus 298 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-------~~~v~~-------~a~~aL~~l~~------~ 357 (488)
+.++.......|+|...+.......-+.+|.++.|...+... +..-++ ++++++.|+.- +
T Consensus 338 eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~N 417 (619)
T 3c2g_A 338 DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPN 417 (619)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTT
T ss_pred CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCC
Confidence 888999999999999998788777778899999999887643 222233 44444544431 1
Q ss_pred C--------CHHHHHHHHHCCChHHHHhhcCCC
Q 011328 358 G--------SNEQIKFLVSQGCIKPLCDLLNCP 382 (488)
Q Consensus 358 ~--------~~~~~~~l~~~~~i~~L~~ll~~~ 382 (488)
+ +.++...+++.++++.|+.+++-+
T Consensus 418 Gqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e 450 (619)
T 3c2g_A 418 GETKTAGPNEKQQVCKFIEIDILKKLMSCLSCE 450 (619)
T ss_dssp SCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCC
T ss_pred CccccCChHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1 233445566667888888888743
No 121
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.60 E-value=0.66 Score=40.01 Aligned_cols=139 Identities=12% Similarity=0.133 Sum_probs=88.2
Q ss_pred HHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcC----C------CChhHHHHHHHHHHHhcCCCchhhHHHH-hCCCH
Q 011328 50 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----D------DFPQLQFEAAWALTNIASGTSENTRVVI-DHGAV 118 (488)
Q Consensus 50 a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~----~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i 118 (488)
.+..|...+...+....+.+ ..+++..|++.|.. + ...+.+..++.||..+.. +....+.++ ..+.+
T Consensus 21 ~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i 98 (233)
T 2f31_A 21 CLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGI 98 (233)
T ss_dssp HHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHH
T ss_pred HHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHH
Confidence 34444444444434445666 46777778777642 1 125678889999999998 555555555 45788
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhhhhCCCc-hh-HHHHH----------hcCChHHHHHHhcccccHhHHHHHHHHHHHh
Q 011328 119 PIFVRLLSSPTDDVREQAVWALGNVAGDSP-KC-RDLVL----------SNGALMPLLAQFNEHAKLSMLRNATWTLSNF 186 (488)
Q Consensus 119 ~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l 186 (488)
..+...+.++++.++..++..|..+|..+. +. ...+. +..-..+++..+..+.+.+.+..++..+-.+
T Consensus 99 ~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~l 178 (233)
T 2f31_A 99 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 178 (233)
T ss_dssp HHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 999999999999999999999998886553 11 22221 2234555666664444555555555555555
Q ss_pred hcCC
Q 011328 187 CRGK 190 (488)
Q Consensus 187 ~~~~ 190 (488)
....
T Consensus 179 i~~~ 182 (233)
T 2f31_A 179 ITPA 182 (233)
T ss_dssp HTTC
T ss_pred HCCC
Confidence 5554
No 122
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.43 E-value=0.7 Score=50.60 Aligned_cols=283 Identities=11% Similarity=0.083 Sum_probs=157.9
Q ss_pred hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhh--CCCCHHHHHHHHHHHhhhhCC-----CchhHHHHHhcCCh
Q 011328 88 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL--SSPTDDVREQAVWALGNVAGD-----SPKCRDLVLSNGAL 160 (488)
Q Consensus 88 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L--~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~~~~l 160 (488)
++.|..|-..|..+-. ++ .....+...| .+.+..+|..|+.+|.+.... +++.+..+.
T Consensus 27 ~~~r~~Ae~~L~~~~~-~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir----- 91 (1204)
T 3a6p_A 27 QRYRLEALKFCEEFKE-KC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK----- 91 (1204)
T ss_dssp HHHHHHHHHHHHHHHH-HC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-----
T ss_pred hHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-----
Confidence 6778888888877654 22 2334444433 346889999999999987632 222222222
Q ss_pred HHHHHHhccc------ccHhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC---
Q 011328 161 MPLLAQFNEH------AKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG--- 230 (488)
Q Consensus 161 ~~L~~ll~~~------~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~--- 230 (488)
..++..+... ....++..++.++..++... +... ..+++.++.++.+ +......++.+|..+++.
T Consensus 92 ~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W----p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~ 166 (1204)
T 3a6p_A 92 NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW----PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVT 166 (1204)
T ss_dssp HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC----TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcc
Confidence 2344444222 35678888999999988764 4333 4677888888865 556677788888877642
Q ss_pred C----chhHHH---HHHh---CCHHHHHHhcCC-------------------CCcchHhHHHHHHhHhhcCCchhhHHHh
Q 011328 231 T----NDKIQA---VIEA---GVCPRLVELLRH-------------------PSPSVLIPALRTVGNIVTGDDMQTQCII 281 (488)
Q Consensus 231 ~----~~~~~~---~~~~---~~l~~L~~lL~~-------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 281 (488)
. ..+... .+.. .++..+..++.. ++..++..++.++.+...--+ ...+.
T Consensus 167 ~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~--~~~i~ 244 (1204)
T 3a6p_A 167 FQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS--MSHIT 244 (1204)
T ss_dssp SCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC--HHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC--HHHHH
Confidence 1 111111 1111 222333333322 123456677777776654222 12223
Q ss_pred hCC--ChHHHHHHhcccchhhHHHHHHHHHHHHhcCC--HHHHHHHHHc---CChHHHHHHHh--------cCChhHHHH
Q 011328 282 NHQ--ALPCLLDLLTQNYKKSIKKEACWTISNITAGN--VNQIQAIIEA---GIIGPLVNLLL--------NAEFEIKKE 346 (488)
Q Consensus 282 ~~~--~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~~---~~l~~L~~ll~--------~~~~~v~~~ 346 (488)
+.. +++.+...+. +++++..|+.+|..++... ++....++.. ..+..++.... +.+.++.+.
T Consensus 245 ~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~ 321 (1204)
T 3a6p_A 245 AENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKR 321 (1204)
T ss_dssp TTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHH
T ss_pred hccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHH
Confidence 332 6666776654 4578999999999999732 4433333321 01234444442 114566667
Q ss_pred HHHHHHHhccCCCHHHHHHHHHC-----------CChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011328 347 AAWAISNATSGGSNEQIKFLVSQ-----------GCIKPLCDLLNCPDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 347 a~~aL~~l~~~~~~~~~~~l~~~-----------~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~ 400 (488)
.+..+..+.. . ...++++ ++++.+..+..+++..+...++.....+++.
T Consensus 322 l~~ll~~lg~----~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 322 LCQVLCALGN----Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHHHHHH----H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHH----H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 7777766652 1 1112211 3466777777777766666666655555443
No 123
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.42 E-value=0.085 Score=49.41 Aligned_cols=161 Identities=17% Similarity=0.143 Sum_probs=109.4
Q ss_pred hhhHHHhhCCChHHHHHHhcc----------cchhhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCChhH
Q 011328 275 MQTQCIINHQALPCLLDLLTQ----------NYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEI 343 (488)
Q Consensus 275 ~~~~~~~~~~~~~~L~~lL~~----------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v 343 (488)
...+.+. .+++..|+.+|.. ..+......++.+|..+... ......++. ...+..+...+.+..+.+
T Consensus 101 sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~ 178 (383)
T 3eg5_B 101 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNM 178 (383)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHH
T ss_pred HHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCchHH
Confidence 3444444 4566667776632 11346677888999888765 455555554 567888999998889999
Q ss_pred HHHHHHHHHHhccCCCHHH-HHH----------HHHCCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhhhhhhccCCCC
Q 011328 344 KKEAAWAISNATSGGSNEQ-IKF----------LVSQGCIKPLCDLLNC-PDPRIVTVCLEGLENILKAGEAEKNMGNTG 411 (488)
Q Consensus 344 ~~~a~~aL~~l~~~~~~~~-~~~----------l~~~~~i~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~ 411 (488)
+..++..|..++....++. ... ..+..-...+++.++. .+.+.+..++..+..++...+....
T Consensus 179 ~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~----- 253 (383)
T 3eg5_B 179 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF----- 253 (383)
T ss_dssp HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH-----
T ss_pred HHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHH-----
Confidence 9999999988876543111 111 1234557778888886 5678888888888888776543321
Q ss_pred ccchHHHHHHhhccHHHHHHhhcCCCHHHHHH
Q 011328 412 GVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK 443 (488)
Q Consensus 412 ~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~ 443 (488)
.-..+..|...|..+.+..+....++++...
T Consensus 254 -R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Q 284 (383)
T 3eg5_B 254 -RVHIRSELMRLGLHQVLQELREIENEDMKVQ 284 (383)
T ss_dssp -HHHHHHHHHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred -HHHHHHHHHHCChHHHHHHHhcCCChhHHHH
Confidence 1225777889999999999888778877543
No 124
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=95.38 E-value=1.8 Score=46.62 Aligned_cols=160 Identities=13% Similarity=0.114 Sum_probs=105.8
Q ss_pred cHhHHHHHHHHHHHhhc----CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHH
Q 011328 172 KLSMLRNATWTLSNFCR----GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 247 (488)
Q Consensus 172 ~~~v~~~a~~~L~~l~~----~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L 247 (488)
++.++..+..+++.+.. ..+.........+...+.+.+...+..-+..++.+|+|+... ..++.|
T Consensus 408 ~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-----------~~l~~l 476 (1056)
T 1lsh_A 408 RPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-----------NSIKKI 476 (1056)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-----------GGHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-----------hHHHHH
Confidence 45666777777766653 333333334556666677777778888889999999998642 235566
Q ss_pred HHhcCC-----C--CcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhc-ccchhhHHHHHHHHHHHHhcCCHHH
Q 011328 248 VELLRH-----P--SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQ 319 (488)
Q Consensus 248 ~~lL~~-----~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~ 319 (488)
.+++.. . ...++..|+++|..++...+... -+.++++.. ...+.++|..|+..|.... .+..
T Consensus 477 ~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvRiaA~~~Lm~t~-P~~~- 546 (1056)
T 1lsh_A 477 QRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIRSCIVFFESK-PSVA- 546 (1056)
T ss_dssp HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHHHHHHHHHTC-CCHH-
T ss_pred HHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHHHHHHHHHHHHC-cCHH-
Confidence 666632 1 23577889999999987544332 355777773 2337889999988886432 2233
Q ss_pred HHHHHHcCChHHHHHHHhc-CChhHHHHHHHHHHHhccCCCH
Q 011328 320 IQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSN 360 (488)
Q Consensus 320 ~~~l~~~~~l~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~ 360 (488)
.+..+...+.. ++..|.......|.+++....+
T Consensus 547 --------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 547 --------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp --------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred --------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 34445555655 5888999999999999887655
No 125
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.33 E-value=0.74 Score=41.41 Aligned_cols=173 Identities=12% Similarity=0.065 Sum_probs=103.2
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHH----HHHHhhCC-CCHHHHHHHHHHHhhhhCCCc
Q 011328 74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVP----IFVRLLSS-PTDDVREQAVWALGNVAGDSP 148 (488)
Q Consensus 74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~----~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~ 148 (488)
.+..+.+++ .-. .+.+.-++..+.-.+. .+.....+.+.+.-. .+...+.+ ..+.-+..++++++|+.....
T Consensus 104 ~l~~l~kil-~WP-~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~ 180 (304)
T 3ebb_A 104 QLQILWKAI-NCP-EDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA 180 (304)
T ss_dssp HHHHHHHHH-TSC-TTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH
T ss_pred HHHHHHHHH-cCC-HHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch
Confidence 345666666 333 4566777777777776 666666555432222 33344433 456678999999999987655
Q ss_pred hhHHHHHhcCChHHHHHHhc---ccccHhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcc-CChhHHHHHHHH
Q 011328 149 KCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHS-NDDEVLTDACWA 223 (488)
Q Consensus 149 ~~~~~~~~~~~l~~L~~ll~---~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~-~~~~v~~~al~~ 223 (488)
.+..+.. ....++..+. .+.+..++..++..+.|++-.. ..........++..+..+++. .|.+....++-+
T Consensus 181 -g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvA 257 (304)
T 3ebb_A 181 -GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVA 257 (304)
T ss_dssp -HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred -hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 4555543 2334444432 3456778888888888887543 111222233455555566653 588999999999
Q ss_pred HHHhccCCchhHHHHHHh-CCHHHHHHhcCC
Q 011328 224 LSYLSDGTNDKIQAVIEA-GVCPRLVELLRH 253 (488)
Q Consensus 224 L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~ 253 (488)
|+++...+.+..+ +.+. ++-..+-.....
T Consensus 258 LGtL~~~~~~~~~-lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 258 LGTLISDDSNAVQ-LAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHHHTTCHHHHH-HHHHTTHHHHGGGGGGC
T ss_pred HHHHHhCChhHHH-HHHHcCHHHHHHHHHhC
Confidence 9999977654433 4433 443333333433
No 126
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.20 E-value=1.7 Score=39.09 Aligned_cols=185 Identities=16% Similarity=0.130 Sum_probs=109.2
Q ss_pred HHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCC----ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHH
Q 011328 245 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ----ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 320 (488)
Q Consensus 245 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~----~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 320 (488)
..+.+++ +=..+.+..++..+..++. .+.....+.+.+ ++..+...+.++..+..+..++++++|+..+ +..+
T Consensus 106 ~~l~kil-~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g~ 182 (304)
T 3ebb_A 106 QILWKAI-NCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QAGQ 182 (304)
T ss_dssp HHHHHHH-TSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHHH
T ss_pred HHHHHHH-cCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-chhH
Confidence 4444444 2223455666666666554 232222222211 2233444444333556788999999999886 4444
Q ss_pred HHHHH--cCChHHHHHHHhcCChhHHHHHHHHHHHhccCC----CHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHHH
Q 011328 321 QAIIE--AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG----SNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEG 393 (488)
Q Consensus 321 ~~l~~--~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~----~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~ 393 (488)
+.+.. ..+++.+...+.+++..++..++..+.|++... +.+.... ++..+..+++ ..+.+...+++-+
T Consensus 183 ~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~-----ll~~l~~il~~~~d~EalyR~LvA 257 (304)
T 3ebb_A 183 KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQ-----CLSLISTILEVVQDLEATFRLLVA 257 (304)
T ss_dssp HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHH-----HHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHH-----HHHHHHHHHhccCCHHHHHHHHHH
Confidence 44443 124444444444557889999999999998531 2222222 3344444443 4688999999999
Q ss_pred HHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC-CCHHHHHHHHHHHH
Q 011328 394 LENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILE 449 (488)
Q Consensus 394 L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~-~~~~v~~~a~~~l~ 449 (488)
|++++..+.. ..+..+..|....+..+... ..++|.+-+..++.
T Consensus 258 LGtL~~~~~~------------~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~ 302 (304)
T 3ebb_A 258 LGTLISDDSN------------AVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILN 302 (304)
T ss_dssp HHHHHTTCHH------------HHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHT
T ss_pred HHHHHhCChh------------HHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 9999965332 35556666666667777554 56778877776654
No 127
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.19 E-value=1.1 Score=41.90 Aligned_cols=155 Identities=12% Similarity=0.107 Sum_probs=102.1
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcC-----------CCChhHHHHHHHHHHH
Q 011328 33 PAMVAGVWSDD-RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR-----------DDFPQLQFEAAWALTN 100 (488)
Q Consensus 33 ~~l~~~L~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~-----------~~~~~v~~~a~~~L~~ 100 (488)
...++.|++.- ..-....+..|..-+...+...++.++ .+++..|++.|.. .+ ...+..+++||..
T Consensus 69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d-~~~q~~~l~CLka 146 (383)
T 3eg5_B 69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYD-SRNQHEIIRCLKA 146 (383)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------C-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhh-HHHHHHHHHHHHH
Confidence 34566666542 222234455666555554444567776 6678888888741 12 4788899999999
Q ss_pred hcCCCchhhHHHH-hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc-hh-HHHH----------HhcCChHHHHHHh
Q 011328 101 IASGTSENTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KC-RDLV----------LSNGALMPLLAQF 167 (488)
Q Consensus 101 l~~~~~~~~~~~~-~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~-~~-~~~~----------~~~~~l~~L~~ll 167 (488)
+.. +......++ ....+..+...+.+.++.++..++..|+.+|..+. .. ...+ .+..-...++..+
T Consensus 147 lmN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L 225 (383)
T 3eg5_B 147 FMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGL 225 (383)
T ss_dssp HTS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTT
T ss_pred Hhc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 998 555555555 55789999999999999999999999999987653 21 2222 2233466777777
Q ss_pred cccccHhHHHHHHHHHHHhhcCC
Q 011328 168 NEHAKLSMLRNATWTLSNFCRGK 190 (488)
Q Consensus 168 ~~~~~~~v~~~a~~~L~~l~~~~ 190 (488)
....+.+.+..++..+-.+....
T Consensus 226 ~~~~~~e~~~~~m~lIN~li~~~ 248 (383)
T 3eg5_B 226 KSGTSIALKVGCLQLINALITPA 248 (383)
T ss_dssp STTSCHHHHHHHHHHHHHHHTTC
T ss_pred HccCcHHHHHHHHHHHHHHHcCC
Confidence 44456666666666666666654
No 128
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.39 E-value=2.1 Score=45.99 Aligned_cols=167 Identities=15% Similarity=0.177 Sum_probs=110.7
Q ss_pred CHHHHHHhhCC----CCHHHHHHHHHHHhhhh----CCCchhHHHHHhcCChHHHHHHhc---ccccHhHHHHHHHHHHH
Q 011328 117 AVPIFVRLLSS----PTDDVREQAVWALGNVA----GDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSN 185 (488)
Q Consensus 117 ~i~~L~~~L~~----~~~~v~~~a~~~L~~l~----~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~~v~~~a~~~L~~ 185 (488)
.+..+..++.+ .++.+++.++.+++.++ ...+.|.. ..++.+.+.+. ...+..-+..++.+|.|
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN 466 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGN 466 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Confidence 35666667765 56788888888888775 23222211 12344444432 33456677889999999
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhcc-------CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc--CCCCc
Q 011328 186 FCRGKPQPLFEQTRPALPALERLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL--RHPSP 256 (488)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~l~~ll~~-------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL--~~~~~ 256 (488)
+... ..++.+.+++.. ....++..|+++|..+....+...+ +.++++. ...++
T Consensus 467 ~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~ 528 (1056)
T 1lsh_A 467 AGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKS 528 (1056)
T ss_dssp HTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCH
T ss_pred cCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCCh
Confidence 8763 467777777642 1356888999999999876543333 5566776 44678
Q ss_pred chHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC
Q 011328 257 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 316 (488)
Q Consensus 257 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 316 (488)
++|..|+..|... ++.. ..+..+...+..+.+..|+......|.+++...
T Consensus 529 EvRiaA~~~Lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 529 ELRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHH---CcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 8999988877432 2322 235667777777658899999999999998843
No 129
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=94.23 E-value=0.53 Score=44.07 Aligned_cols=139 Identities=14% Similarity=0.081 Sum_probs=97.3
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHH-HHH----------
Q 011328 298 KKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ-IKF---------- 365 (488)
Q Consensus 298 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~-~~~---------- 365 (488)
+......++.+|..+... ......++. .+.+..+...+.++++.++..++..|..++....++. ...
T Consensus 71 d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~ 149 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 149 (386)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence 456677888888888765 445555554 4578888888888889999999888887776543111 111
Q ss_pred HHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHH
Q 011328 366 LVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK 443 (488)
Q Consensus 366 l~~~~~i~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~ 443 (488)
..+..-...+++.++ +.+.+.+..++..+..++...+.... ....+..|...|..+.+..+....++++...
T Consensus 150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~------R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF------RVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH------HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHH------HHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 123345667777776 45667888888888888776554332 2236788899999999999988888887554
No 130
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=93.70 E-value=3.9 Score=38.18 Aligned_cols=139 Identities=11% Similarity=0.103 Sum_probs=89.3
Q ss_pred HHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcC----C------CChhHHHHHHHHHHHhcCCCchhhHHHH-hCCCHH
Q 011328 51 TTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----D------DFPQLQFEAAWALTNIASGTSENTRVVI-DHGAVP 119 (488)
Q Consensus 51 ~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~----~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~ 119 (488)
+..|...+.+.+...++.+. .+++..|+..|.. . .....+..+++||..+.. +......++ ..+.+.
T Consensus 26 L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i~ 103 (386)
T 2bnx_A 26 LESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGIL 103 (386)
T ss_dssp HHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHH
T ss_pred HHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHHH
Confidence 34444434444334455564 5677777777641 1 125678899999999998 555555555 557899
Q ss_pred HHHHhhCCCCHHHHHHHHHHHhhhhCCCc-hh-HHHH----------HhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011328 120 IFVRLLSSPTDDVREQAVWALGNVAGDSP-KC-RDLV----------LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 187 (488)
Q Consensus 120 ~L~~~L~~~~~~v~~~a~~~L~~l~~~~~-~~-~~~~----------~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~ 187 (488)
.+...+.+.++.++..++..|..+|..+. +. ...+ .+..-+..++..+..+.+.+.+..++..+-.+.
T Consensus 104 ~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv 183 (386)
T 2bnx_A 104 LLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALI 183 (386)
T ss_dssp HHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999998886553 21 2221 122345667777755556666666666666666
Q ss_pred cCCC
Q 011328 188 RGKP 191 (488)
Q Consensus 188 ~~~~ 191 (488)
...+
T Consensus 184 ~~~~ 187 (386)
T 2bnx_A 184 TPAE 187 (386)
T ss_dssp TTCS
T ss_pred CCCC
Confidence 6543
No 131
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=93.35 E-value=5 Score=37.18 Aligned_cols=88 Identities=10% Similarity=0.124 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHh
Q 011328 45 NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL 124 (488)
Q Consensus 45 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~ 124 (488)
..+...+.-+.+++-..++. .-.++++.++++-.+.+ .++|...+..|...+....+... ..++.|..+
T Consensus 40 ~~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~L 108 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL-----KLIANLNML 108 (386)
T ss_dssp THHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 46888888888875543222 22578999999988888 89999999999988874444433 246788888
Q ss_pred hCCCCHHHHHHHHHHHhhh
Q 011328 125 LSSPTDDVREQAVWALGNV 143 (488)
Q Consensus 125 L~~~~~~v~~~a~~~L~~l 143 (488)
++++++.+...++.+.+++
T Consensus 109 L~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 109 LRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp HTCSSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHH
Confidence 8888999998888888776
No 132
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=92.88 E-value=0.32 Score=37.77 Aligned_cols=79 Identities=14% Similarity=0.254 Sum_probs=58.6
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhh-ccHHHHHHhhcCCC--------HHHH
Q 011328 371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA-EGLEKIENLQSHDN--------TEIY 441 (488)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~L~~l~~~~~--------~~v~ 441 (488)
+++.|.+-|++.++.++..+|.+|..++..+... |...+++. ..++.+.++...++ ..|+
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~-----------f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR 118 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE-----------FRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVR 118 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH-----------HHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH-----------HHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHH
Confidence 5788888888889999999999999998766532 55555433 34555555544433 7799
Q ss_pred HHHHHHHHHhcCCCCCCCC
Q 011328 442 EKAVKILETYWVEEDEDEP 460 (488)
Q Consensus 442 ~~a~~~l~~~~~~~~~~~~ 460 (488)
.+|..+++-+|+.++...+
T Consensus 119 ~~AkEl~~ll~d~~~~~~~ 137 (140)
T 1vdy_A 119 ETAHETISAIFSEENGSGP 137 (140)
T ss_dssp HHHHHHHHHHTCCSSCCCC
T ss_pred HHHHHHHHHHhCcCCCCCC
Confidence 9999999999999887543
No 133
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=92.24 E-value=4.1 Score=37.78 Aligned_cols=174 Identities=11% Similarity=0.035 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC
Q 011328 175 MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 254 (488)
Q Consensus 175 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 254 (488)
.+...+.-+..+.-+. .......+++.++.+-.+.+.+++..++..|...+....+.. ..+++.|..++.++
T Consensus 41 ~Kl~~L~q~~EL~l~~---dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~d~ 112 (386)
T 3o2t_A 41 SKITVLKQVQELIINK---DPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLRDE 112 (386)
T ss_dssp HHHHHHHHHHHHHHTT---CGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCC
Confidence 3445555555544332 123567899999999999999999999999998886443332 25567888888888
Q ss_pred CcchHhHHHHHHhHhhcC-------Cch---hhHHHh--hCCChHHHHHHhcccchhhHHHHHHHHHHHHhc----CCHH
Q 011328 255 SPSVLIPALRTVGNIVTG-------DDM---QTQCII--NHQALPCLLDLLTQNYKKSIKKEACWTISNITA----GNVN 318 (488)
Q Consensus 255 ~~~v~~~a~~~L~~l~~~-------~~~---~~~~~~--~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~----~~~~ 318 (488)
++.+...++.+.+++-.. ++. ...... -..+-..++.++.+. +..+|..++..+-.+.. +..+
T Consensus 113 d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~-n~GVrl~aiKFle~VIl~qS~~~~d 191 (386)
T 3o2t_A 113 NVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSD-NDGIRTHAIKFVEGLIVTLSPRMAD 191 (386)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHTSCCCTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHhCCCCCC
Confidence 888888888777766420 111 011111 112345566677777 88999999988877652 1000
Q ss_pred -----------------------HHHHHH--HcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccC
Q 011328 319 -----------------------QIQAII--EAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSG 357 (488)
Q Consensus 319 -----------------------~~~~l~--~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~ 357 (488)
....+- ..+++..|+..+..+ +......++.+|+.++..
T Consensus 192 ~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~ 257 (386)
T 3o2t_A 192 SEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQ 257 (386)
T ss_dssp CCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHh
Confidence 001111 245788888888864 344556678888888764
No 134
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=91.93 E-value=0.25 Score=39.82 Aligned_cols=76 Identities=13% Similarity=0.194 Sum_probs=57.7
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC-CCHHHHHHHHHHHH
Q 011328 371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILE 449 (488)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~-~~~~v~~~a~~~l~ 449 (488)
++..|.+-+.+.++.++..|+..|..+++.+... |...+.....++.+..+... .+++|+.++..++.
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~-----------Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~ 121 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKI-----------FHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMV 121 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH-----------HHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH-----------HHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 4666777778899999999999999999875432 56566666667777777654 67899999999998
Q ss_pred HhcCCCCC
Q 011328 450 TYWVEEDE 457 (488)
Q Consensus 450 ~~~~~~~~ 457 (488)
........
T Consensus 122 ~W~~~f~~ 129 (163)
T 1x5b_A 122 EWSEEFQK 129 (163)
T ss_dssp HHHHHTTT
T ss_pred HHHHHhcC
Confidence 77665554
No 135
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=91.47 E-value=1.4 Score=39.05 Aligned_cols=135 Identities=14% Similarity=0.093 Sum_probs=89.9
Q ss_pred chHhHHHHHHhHhhcCCchhhHHHh-hCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH--cCChHHHH
Q 011328 257 SVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE--AGIIGPLV 333 (488)
Q Consensus 257 ~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~l~~L~ 333 (488)
.....|+..|.-++..-....+.+- +...+..|+ +.... .+.++..|.++++...+++|.....+.+ ..++..++
T Consensus 43 ~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf 120 (315)
T 3qml_C 43 ARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIM 120 (315)
T ss_dssp HHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHH
Confidence 3556788888888765443333332 323333333 22333 6679999999999999999999988876 34566666
Q ss_pred HHHhc-------CChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC--CHHHHHHHHHHHHHHHH
Q 011328 334 NLLLN-------AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP--DPRIVTVCLEGLENILK 399 (488)
Q Consensus 334 ~ll~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~al~~L~~l~~ 399 (488)
.-|.. ....+++.-+.+|.-|+... ... ....+..|.+++... ++.++..++..+..++.
T Consensus 121 ~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~-~~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 121 AALSNLNDSNHRSSNILIKRYLSILNELPVTS-EDL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS-TTC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHhcCh-Hhh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 55443 23356677788888887653 111 235677788877766 88999999999998885
No 136
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=91.42 E-value=2.3 Score=37.67 Aligned_cols=149 Identities=11% Similarity=0.090 Sum_probs=97.9
Q ss_pred hchHHHHHHhhccC------ChhHHHHHHHHHHHhccCCchhHHHHHH--hCCHHHHHHhcCCCCcchHhHHHHHHhHhh
Q 011328 199 RPALPALERLIHSN------DDEVLTDACWALSYLSDGTNDKIQAVIE--AGVCPRLVELLRHPSPSVLIPALRTVGNIV 270 (488)
Q Consensus 199 ~~~~~~l~~ll~~~------~~~v~~~al~~L~~l~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~ 270 (488)
+.-+..+..+++++ +......++..|..++.....-.+ +++ ...+..|+ +.....+.+++.|.++|+...
T Consensus 21 s~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~K-I~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssL 98 (315)
T 3qml_C 21 SSDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYK-IITHEFALLANLS-LNENLPLTLRELSTRVITSCL 98 (315)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHH-HHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhH-HHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHH
Confidence 34445556666665 455677888888888866543333 443 34444444 334456679999999999999
Q ss_pred cCCchhhHHHhh--CCChHHHHHHhcc-------cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--
Q 011328 271 TGDDMQTQCIIN--HQALPCLLDLLTQ-------NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-- 339 (488)
Q Consensus 271 ~~~~~~~~~~~~--~~~~~~L~~lL~~-------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-- 339 (488)
+.+|.....+.+ ..++..+..-|.. . ...+.+.-+.+|.-|...+.. + ....+..|.+++...
T Consensus 99 RNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~-~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~ 172 (315)
T 3qml_C 99 RNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRS-SNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNK 172 (315)
T ss_dssp TTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CC-CHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTT
T ss_pred ccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccch-hHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCC
Confidence 999988777664 2444444444322 2 335667777888888775321 1 244678888888877
Q ss_pred ChhHHHHHHHHHHHhc
Q 011328 340 EFEIKKEAAWAISNAT 355 (488)
Q Consensus 340 ~~~v~~~a~~aL~~l~ 355 (488)
++.+|..++..+..+-
T Consensus 173 d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 173 DKQLQIKVLELISKIL 188 (315)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHc
Confidence 8899999999888876
No 137
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=91.28 E-value=6.9 Score=34.02 Aligned_cols=99 Identities=6% Similarity=0.061 Sum_probs=70.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011328 34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 113 (488)
Q Consensus 34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 113 (488)
.+++..+....+.+...+.....++-..++... ..+++.++.+..+.+ .++|...+..+...+...++....
T Consensus 19 ~lln~A~~~~~~~kl~~L~qa~el~~~~dp~ll-----~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~~-- 90 (257)
T 3gs3_A 19 DWCNELVIASPSTKCELLAKVQETVLGSCAELA-----EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLPH-- 90 (257)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGH-----HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHHH--
T ss_pred HHHHHhhhcCcHHHHHHHHHHHHHHHccCHhHH-----HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 344444443346888899999997665433322 346778888776766 899999999999988654544333
Q ss_pred hCCCHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 011328 114 DHGAVPIFVRLLSSPTDDVREQAVWALGNV 143 (488)
Q Consensus 114 ~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l 143 (488)
.++.|..+++++++.+...++.+..++
T Consensus 91 ---~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 91 ---VINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp ---HHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 467888889888999998888877776
No 138
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=89.38 E-value=9.1 Score=35.59 Aligned_cols=235 Identities=12% Similarity=0.044 Sum_probs=110.1
Q ss_pred hhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHh
Q 011328 107 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 186 (488)
Q Consensus 107 ~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l 186 (488)
......++...+..|+.+++++++.=|+..-.+|..+-..-...|..+.. ..-..+.+.+.......=....+.+++.+
T Consensus 120 ~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsI 198 (403)
T 3fga_B 120 NIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSI 198 (403)
T ss_dssp HHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred hhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHH
Confidence 33344455567888999999999999999888888875433333332221 11122333332211111123445555555
Q ss_pred hcCCC-CCChhhhhchHHHHHHhhccCChhH-HHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHH
Q 011328 187 CRGKP-QPLFEQTRPALPALERLIHSNDDEV-LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264 (488)
Q Consensus 187 ~~~~~-~~~~~~~~~~~~~l~~ll~~~~~~v-~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~ 264 (488)
..+-. ........-....++.+-+...-.. -.....|+......++.....++ ..+++.=-..++.=...-+.
T Consensus 199 inGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi-----~~LLk~WP~tns~KevlFL~ 273 (403)
T 3fga_B 199 INGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV-----MALLKYWPKTHSPKEVMFLN 273 (403)
T ss_dssp HHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHH-----HHHHHTCCSSCHHHHHHHHH
T ss_pred HcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHH-----HHHHHhCCCCCcHHHHHHHH
Confidence 54431 1112222233344444444433221 23334444444444443333222 22222111122211222233
Q ss_pred HHhHhhcCC-chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHH-----HHhcCCHHHHHHHHHcCChHHHHHHH--
Q 011328 265 TVGNIVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS-----NITAGNVNQIQAIIEAGIIGPLVNLL-- 336 (488)
Q Consensus 265 ~L~~l~~~~-~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~-----nl~~~~~~~~~~l~~~~~l~~L~~ll-- 336 (488)
-+..+...- +.....+. ..++..+...+.++ +..|-+.|+.... ++...+... ++|.+...+
T Consensus 274 Ele~iLe~~~~~~f~~i~-~~lf~~la~ci~S~-hfqVAErAL~~wnNe~i~~li~~n~~~--------IlPii~p~L~~ 343 (403)
T 3fga_B 274 ELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLISDNAAK--------ILPIMFPSLYR 343 (403)
T ss_dssp HHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHHHTTHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHH-HHHHHHHHHHHCCC-CHHHHHHHHHHhccHHHHHHHHHhHHH--------HHHHHHHHHHH
Confidence 333343322 22222221 23556666777777 7777777765432 222222221 344444443
Q ss_pred --hcC-ChhHHHHHHHHHHHhccC
Q 011328 337 --LNA-EFEIKKEAAWAISNATSG 357 (488)
Q Consensus 337 --~~~-~~~v~~~a~~aL~~l~~~ 357 (488)
... +..++..+..++.-+...
T Consensus 344 ~~~~HWn~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 344 NSKTHWNKTIHGLIYNALKLFMEM 367 (403)
T ss_dssp TTSCCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHccCHHHHHHHHHHHHHHHHh
Confidence 333 778998888888887653
No 139
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=88.40 E-value=0.97 Score=35.31 Aligned_cols=72 Identities=8% Similarity=0.048 Sum_probs=58.3
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 011328 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 399 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~ 399 (488)
++..+.+-+.++++.++..|+..|-.++.+++......+....++..|..+++..++.|+..++..+..-..
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 455667778888999999999999999999888777777666778888888877888999999888876544
No 140
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=87.77 E-value=1.5 Score=34.57 Aligned_cols=73 Identities=8% Similarity=-0.047 Sum_probs=60.4
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHh
Q 011328 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~al~~L~~l~~~ 400 (488)
++..|..-+.++++.++..|+..|-.++.++...+...+....++..|+.++.. .+++|+..++..+..-...
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 455677778888999999999999999999998888888888888999988863 5678999988888766543
No 141
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=86.45 E-value=0.98 Score=36.33 Aligned_cols=74 Identities=12% Similarity=0.061 Sum_probs=57.3
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 103 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~ 103 (488)
+.+..|.+.|++.++.+++.|+..|-.+..+-.......+....++..|++++.....+.|+..++..+...+.
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 56677888889999999999999999988775344455666677888888888764448899998888776654
No 142
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=86.26 E-value=1.4 Score=34.74 Aligned_cols=71 Identities=8% Similarity=-0.072 Sum_probs=58.4
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC------CCHHHHHHHHHHHHHHH
Q 011328 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENIL 398 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~al~~L~~l~ 398 (488)
++..+..-++++++.++..|+..|-.++.+++..+...+....++..|..++.. .++.|+..++..+..-.
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 455667778889999999999999999999988888888888889999998874 46788888887776543
No 143
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=85.33 E-value=1.8 Score=33.71 Aligned_cols=76 Identities=14% Similarity=0.239 Sum_probs=56.6
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 011328 371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET 450 (488)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~ 450 (488)
++..|.+-+.+.++.++..|+..|..+++.+... |...+.+...++.+..+....+++|+.+...++..
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~-----------f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~ 111 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI-----------FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVE 111 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-----------HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH-----------HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 4667777778889999999999999888775432 45555555566667777666789999999999987
Q ss_pred hcCCCCC
Q 011328 451 YWVEEDE 457 (488)
Q Consensus 451 ~~~~~~~ 457 (488)
....-.+
T Consensus 112 W~~~f~~ 118 (140)
T 3ldz_A 112 WTDEFKN 118 (140)
T ss_dssp HHHHHTT
T ss_pred HHHHhCC
Confidence 6655443
No 144
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=84.95 E-value=2.8 Score=32.95 Aligned_cols=76 Identities=16% Similarity=0.150 Sum_probs=58.9
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC------CCHHHHHHH
Q 011328 371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH------DNTEIYEKA 444 (488)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~------~~~~v~~~a 444 (488)
++..|..-+.+.++.++..|+..|..+++.+... |...+.+...++.|..+... .+++|+.++
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~-----------fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~ki 107 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEK-----------FHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRV 107 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-----------HHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH-----------HHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHH
Confidence 4666777778899999999999999999875432 66777777778888888653 478999999
Q ss_pred HHHHHHhcCCCCC
Q 011328 445 VKILETYWVEEDE 457 (488)
Q Consensus 445 ~~~l~~~~~~~~~ 457 (488)
..++......-..
T Consensus 108 l~li~~W~~~f~~ 120 (148)
T 1mhq_A 108 IEILFSWTVWFPE 120 (148)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHHHcCC
Confidence 9999876655443
No 145
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=84.83 E-value=3.1 Score=33.69 Aligned_cols=74 Identities=15% Similarity=0.216 Sum_probs=56.1
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc------CCCHHHHHHH
Q 011328 371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS------HDNTEIYEKA 444 (488)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~------~~~~~v~~~a 444 (488)
++..|.+-+.+.++.++..++..|..+++.+... |...+.+...++.|..+.. ..+.+|++++
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~-----------Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~ki 119 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR-----------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKV 119 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH-----------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH-----------HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHH
Confidence 4667777788899999999999999999885532 5666766777777888764 2468899999
Q ss_pred HHHHHHhcCCC
Q 011328 445 VKILETYWVEE 455 (488)
Q Consensus 445 ~~~l~~~~~~~ 455 (488)
..++......-
T Consensus 120 l~li~~W~~~f 130 (171)
T 1juq_A 120 IELLYSWTMAL 130 (171)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHc
Confidence 98887655443
No 146
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=84.28 E-value=20 Score=33.97 Aligned_cols=236 Identities=12% Similarity=0.041 Sum_probs=117.5
Q ss_pred chhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHH
Q 011328 106 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 185 (488)
Q Consensus 106 ~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~ 185 (488)
+......++...+..|+.+++++++.-|+..-.+|..+-..-...|..+.. ..-..+.+.+.......-....+..++.
T Consensus 152 ~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fi~e~e~~nGIaeLLeilgS 230 (449)
T 2npp_B 152 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGS 230 (449)
T ss_dssp STTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHH-HHHHHHHHHHHTCSCCSCHHHHHHHHHH
T ss_pred hhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCHHHHHHHHHH
Confidence 334455566678899999999999999999888887775433333333322 1222344444222222223456667777
Q ss_pred hhcCCCC-CChhhhhchHHHHHHhhccCChhH-HHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHH
Q 011328 186 FCRGKPQ-PLFEQTRPALPALERLIHSNDDEV-LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL 263 (488)
Q Consensus 186 l~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~v-~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~ 263 (488)
+..+-.. .......-....++.+.+...-.. -.....|+......++.....++ ..|++.=-..++.=...-+
T Consensus 231 IinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi-----~~LLk~WP~tns~KevlFL 305 (449)
T 2npp_B 231 IINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV-----MALLKYWPKTHSPKEVMFL 305 (449)
T ss_dssp HHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHH-----HHHHHTCCSSCHHHHHHHH
T ss_pred HHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHH-----HHHHHhCCCCCchHHHHHH
Confidence 7666521 222222333444555555443222 22333444444444443333222 2222221112221112223
Q ss_pred HHHhHhhcCC-chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHH-----HHhcCCHHHHHHHHHcCChHHHHHHHh
Q 011328 264 RTVGNIVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS-----NITAGNVNQIQAIIEAGIIGPLVNLLL 337 (488)
Q Consensus 264 ~~L~~l~~~~-~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~-----nl~~~~~~~~~~l~~~~~l~~L~~ll~ 337 (488)
.-+..+.... +.....+. ..++..+-..+.++ +..|-+.|+.... ++...+.. .++|.++..+.
T Consensus 306 ~eleeile~~~~~ef~~i~-~~lF~~la~ci~S~-hfqVAErAL~~w~N~~i~~li~~n~~--------~IlPii~p~L~ 375 (449)
T 2npp_B 306 NELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLISDNAA--------KILPIMFPSLY 375 (449)
T ss_dssp HHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHHHTTHH--------HHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHCCHHHHHHHHhchh--------hhHHhhHHHHH
Confidence 3343443322 22222222 23566677777777 7778777764432 22222222 24566666553
Q ss_pred c----C-ChhHHHHHHHHHHHhccC
Q 011328 338 N----A-EFEIKKEAAWAISNATSG 357 (488)
Q Consensus 338 ~----~-~~~v~~~a~~aL~~l~~~ 357 (488)
. . +..++..+..++.-+...
T Consensus 376 ~~s~~HWn~~V~~la~~vlk~l~e~ 400 (449)
T 2npp_B 376 RNSKTHWNKTIHGLIYNALKLFMEM 400 (449)
T ss_dssp SCTTCCSSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 2 2 677898888888877654
No 147
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=83.71 E-value=2.6 Score=33.16 Aligned_cols=74 Identities=16% Similarity=0.227 Sum_probs=57.9
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc------CCCHHHHHHH
Q 011328 371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS------HDNTEIYEKA 444 (488)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~------~~~~~v~~~a 444 (488)
++..|..-+.+.++.++..++..|..+++.+... |...+.....++.|.++.. ..+++|+.+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~-----------fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~ki 117 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR-----------FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKI 117 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHH-----------HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHH-----------HHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHH
Confidence 4667777778899999999999999998876543 5666777777788888864 3578999999
Q ss_pred HHHHHHhcCCC
Q 011328 445 VKILETYWVEE 455 (488)
Q Consensus 445 ~~~l~~~~~~~ 455 (488)
..++......-
T Consensus 118 l~li~~W~~~f 128 (149)
T 3g2s_A 118 LELLYSWTVGL 128 (149)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99998766544
No 148
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=82.23 E-value=1.7 Score=35.24 Aligned_cols=71 Identities=8% Similarity=-0.030 Sum_probs=57.2
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC------CCHHHHHHHHHHHHHHH
Q 011328 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENIL 398 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~al~~L~~l~ 398 (488)
++..|.+-+.++++.++..|+..|-.++.++.......+....++..|+.++.. .+..|+..++..+..-.
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 455677778889999999999999999999877777777777888889988862 35788888887776543
No 149
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=81.63 E-value=21 Score=33.83 Aligned_cols=228 Identities=12% Similarity=0.084 Sum_probs=121.9
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC----
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT---- 105 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~---- 105 (488)
.-+..|+.++.|+|+..|..-...|..+-.+- ...+..+...+-..+.+.+.......-....+.+++.+..+-
T Consensus 162 ~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf--~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PL 239 (449)
T 2npp_B 162 KFVLQLLELFDSEDPRERDFLKTTLHRIYGKF--LGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPL 239 (449)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSC--TTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCC
Confidence 66778999999999999999888888875543 223333333334455555533332344556788888887643
Q ss_pred -chhhHHHHhCCCHHHHHHhhCCCC-HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHH
Q 011328 106 -SENTRVVIDHGAVPIFVRLLSSPT-DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL 183 (488)
Q Consensus 106 -~~~~~~~~~~g~i~~L~~~L~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L 183 (488)
++.+..+ ...|+.+.+... ......-..++..+...++.....+ +..+++.= ..+++.-...-+.-+
T Consensus 240 Keehk~fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~W-P~tns~KevlFL~el 308 (449)
T 2npp_B 240 KEEHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYW-PKTHSPKEVMFLNEL 308 (449)
T ss_dssp CHHHHHHH-----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTC-CSSCHHHHHHHHHHH
T ss_pred cHHHHHHH-----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH-----HHHHHHhC-CCCCchHHHHHHHHH
Confidence 2222222 233344444322 2222334445555554444332221 22233222 223333222333334
Q ss_pred HHhhcCCCCCCh-hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHh---CCHHHHHHhcCC-----C
Q 011328 184 SNFCRGKPQPLF-EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLRH-----P 254 (488)
Q Consensus 184 ~~l~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~-----~ 254 (488)
..+...-+.... .....++..+.+.+.+++-.|.+.|+....| + ....++.. .+++.+...|.. =
T Consensus 309 eeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N-----~-~i~~li~~n~~~IlPii~p~L~~~s~~HW 382 (449)
T 2npp_B 309 EEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN-----E-YIMSLISDNAAKILPIMFPSLYRNSKTHW 382 (449)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC-----H-HHHHHHHTTHHHHHHHHHHHHTSCTTCCS
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCC-----H-HHHHHHHhchhhhHHhhHHHHHHHHHHhc
Confidence 444433222222 2335677778888889999999888755432 1 11112221 345666655522 2
Q ss_pred CcchHhHHHHHHhHhhcCCchh
Q 011328 255 SPSVLIPALRTVGNIVTGDDMQ 276 (488)
Q Consensus 255 ~~~v~~~a~~~L~~l~~~~~~~ 276 (488)
+..++..+..++..+...++..
T Consensus 383 n~~V~~la~~vlk~l~e~d~~l 404 (449)
T 2npp_B 383 NKTIHGLIYNALKLFMEMNQKL 404 (449)
T ss_dssp STTHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHHHHHCHHH
Confidence 5678889998888887766543
No 150
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=81.18 E-value=1.1 Score=38.29 Aligned_cols=74 Identities=11% Similarity=0.107 Sum_probs=57.0
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 103 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~ 103 (488)
+.+..|.+.|++.++.+++.|+..|-.++.+-.......+....++..|.++++....+.|+..++..+...+.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 56778888899999999999999999988765334455555667777888888654447899998888877654
No 151
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=80.52 E-value=4.1 Score=43.27 Aligned_cols=221 Identities=14% Similarity=0.127 Sum_probs=120.5
Q ss_pred hHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHH-----hccCCchh
Q 011328 160 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSY-----LSDGTNDK 234 (488)
Q Consensus 160 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~-----l~~~~~~~ 234 (488)
+..|+++. -+.-.+|+..|-.+|......-+.........++..|-.-+...+.+-.+.|+.+|.. .+..+-.
T Consensus 135 l~dL~~Ls-~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d~~- 212 (997)
T 1vsy_5 135 LVDIIQLA-TSLYPDIYKPAQGTLVHCMKQLVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTDYK- 212 (997)
T ss_dssp HHHHHHHH-TSSCHHHHHHHHHHHHHHHTTBTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGCHH-
T ss_pred HHHHHHHh-cCchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcChH-
Confidence 45566655 6677899999999999888765444444444444444443345567777777776651 1111111
Q ss_pred HHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch-hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHh
Q 011328 235 IQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM-QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 313 (488)
Q Consensus 235 ~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~ 313 (488)
.-..+++.|++....++++++..+-.+...+...... ..-.+++...+ .-+..+ +..+- .+........
T Consensus 213 ----~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~----~~i~~~-d~~i~-~~~~~~~~~~ 282 (997)
T 1vsy_5 213 ----DIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAF----LPLAPP-DGTIN-LQVEAVKLAK 282 (997)
T ss_dssp ----HHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGT----GGGCCS-CSSTT-SHHHHHHHHT
T ss_pred ----HHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHH----hccCCC-cHHHH-HHHHHHHHHH
Confidence 1125667788887778888888776665555542211 00001111111 122222 21111 1111121111
Q ss_pred cCCHHHHHHHHH--cCChHHHHHHHhc-CC--hhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHH
Q 011328 314 AGNVNQIQAIIE--AGIIGPLVNLLLN-AE--FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVT 388 (488)
Q Consensus 314 ~~~~~~~~~l~~--~~~l~~L~~ll~~-~~--~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 388 (488)
...+....+ .++...|+++.++ .+ +.....++..|.++....+... ...+++.+.+.+.++++.++.
T Consensus 283 ---~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~~-----~~~~v~~~~~~l~~dhp~~R~ 354 (997)
T 1vsy_5 283 ---KKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESKP-----DKRAVFSIISQISTKHPEIIH 354 (997)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCCC-----CHHHHHHHHGGGGGCCHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCCC-----CHHHHHHHHHhhcCCCHHHHH
Confidence 111211211 2355556676633 36 8888888888777764331111 112466677888889999999
Q ss_pred HHHHHHHHHHHh
Q 011328 389 VCLEGLENILKA 400 (488)
Q Consensus 389 ~al~~L~~l~~~ 400 (488)
.++.++..++..
T Consensus 355 ~a~~~l~~il~~ 366 (997)
T 1vsy_5 355 LVVKSLLSTCNK 366 (997)
T ss_dssp HHHHHHTHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998877755
No 152
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=79.26 E-value=31 Score=29.91 Aligned_cols=131 Identities=15% Similarity=0.122 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC
Q 011328 174 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 253 (488)
Q Consensus 174 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 253 (488)
+.+...+.-...+.... .......+++.++.+..+.+.+++......+...+....+... ..++.|..++.+
T Consensus 30 ~~kl~~L~qa~el~~~~---dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll~d 101 (257)
T 3gs3_A 30 STKCELLAKVQETVLGS---CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINVVSMLLRD 101 (257)
T ss_dssp HHHHHHHHHHHHHHTTT---TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcc---CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcC
Confidence 35555555566655443 1235577888888887778899999999999888855443322 556788888888
Q ss_pred CCcchHhHHHHHHhHhhcC-------Cch---hhHHHh--hCCChHHHHHHhcccchhhHHHHHHHHHHHHh
Q 011328 254 PSPSVLIPALRTVGNIVTG-------DDM---QTQCII--NHQALPCLLDLLTQNYKKSIKKEACWTISNIT 313 (488)
Q Consensus 254 ~~~~v~~~a~~~L~~l~~~-------~~~---~~~~~~--~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~ 313 (488)
+++.+.+.++.+.+++-.. ++. ...... -..+-..++.++++. +..+|..+...+..+.
T Consensus 102 ~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~-n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 102 NSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNE-NDGIRTNAIKFLEGVV 172 (257)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSS-CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccC-CcchHHHHHHHHHHHH
Confidence 8888888888777666421 111 011111 012334455555555 6667766666666544
No 153
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=77.00 E-value=1.7 Score=36.97 Aligned_cols=74 Identities=12% Similarity=0.089 Sum_probs=55.3
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 103 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~ 103 (488)
+.+..|.+.|++.++.+++.|+..|-.++.+-.......+....++..|++++.+..+..|+..++..+...+.
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 55677888889999999999999999988765333345555666888888887654447888888877766553
No 154
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=74.75 E-value=13 Score=39.51 Aligned_cols=215 Identities=12% Similarity=0.059 Sum_probs=117.2
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc---cccHhHHHHHHHHHH--HhhcCCC
Q 011328 117 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE---HAKLSMLRNATWTLS--NFCRGKP 191 (488)
Q Consensus 117 ~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~---~~~~~v~~~a~~~L~--~l~~~~~ 191 (488)
++.-|+++-.+..+++|..|-.+|......-+..+.. +++.+++.|.. +.+.+-..-|+++|. .+... -
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~-~ 207 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK-L 207 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH-G
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH-H
Confidence 4677788888899999999999999988766655544 36778888854 445555666666554 11110 1
Q ss_pred CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC--chhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011328 192 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT--NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 269 (488)
Q Consensus 192 ~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~--~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l 269 (488)
.........+++.+++....++++++..+-.+...+.... +.... +.+... +.-+..+++.+ ..+.......
T Consensus 208 ~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~-~~~~~~----~~~i~~~d~~i-~~~~~~~~~~ 281 (997)
T 1vsy_5 208 MTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVC-VISDQA----FLPLAPPDGTI-NLQVEAVKLA 281 (997)
T ss_dssp GGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCC-CCCGGG----TGGGCCSCSST-TSHHHHHHHH
T ss_pred hcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHH-HHHHHH----HhccCCCcHHH-HHHHHHHHHH
Confidence 1233444566777777766666766655554444333211 11000 001011 12222222222 1222222211
Q ss_pred hcCCchhhHHHhh--CCChHHHHHHhcccch--hhHHHHHHHHHHHHhcC-----CHHHHHHHHHcCChHHHHHHHhcCC
Q 011328 270 VTGDDMQTQCIIN--HQALPCLLDLLTQNYK--KSIKKEACWTISNITAG-----NVNQIQAIIEAGIIGPLVNLLLNAE 340 (488)
Q Consensus 270 ~~~~~~~~~~~~~--~~~~~~L~~lL~~~~~--~~v~~~a~~~L~nl~~~-----~~~~~~~l~~~~~l~~L~~ll~~~~ 340 (488)
. ...+....+ .++...++.+.++... .+....++..+.++... +++ ++..+++.+.+++
T Consensus 282 ~---~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~~~~~---------~v~~~~~~l~~dh 349 (997)
T 1vsy_5 282 K---KKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESKPDKR---------AVFSIISQISTKH 349 (997)
T ss_dssp T---THHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCCCCHH---------HHHHHHGGGGGCC
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCCCCHH---------HHHHHHHhhcCCC
Confidence 1 111111111 1344455566534336 77888878886666642 333 4555666778889
Q ss_pred hhHHHHHHHHHHHhc
Q 011328 341 FEIKKEAAWAISNAT 355 (488)
Q Consensus 341 ~~v~~~a~~aL~~l~ 355 (488)
+.+|..|..++..+.
T Consensus 350 p~~R~~a~~~l~~il 364 (997)
T 1vsy_5 350 PEIIHLVVKSLLSTC 364 (997)
T ss_dssp HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998886665
No 155
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=71.60 E-value=8.4 Score=32.79 Aligned_cols=74 Identities=12% Similarity=0.278 Sum_probs=53.0
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhh-cCCCHHHHHHHHHHHH
Q 011328 371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILE 449 (488)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~-~~~~~~v~~~a~~~l~ 449 (488)
++..|..-+.+.++.++..|+..|..+++..... |...+.....++.|..+. ...+++|++++..++.
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~-----------f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~ 114 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQT-----------VHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQ 114 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHH-----------HHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchH-----------HHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 4666777778899999999999999998776542 445555555556666654 3467889999999887
Q ss_pred HhcCCC
Q 011328 450 TYWVEE 455 (488)
Q Consensus 450 ~~~~~~ 455 (488)
.....-
T Consensus 115 ~W~~~f 120 (226)
T 3zyq_A 115 AWAHAF 120 (226)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 665443
No 156
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=71.23 E-value=20 Score=33.19 Aligned_cols=191 Identities=9% Similarity=0.028 Sum_probs=101.3
Q ss_pred hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHHHhHhhcCCch
Q 011328 197 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDM 275 (488)
Q Consensus 197 ~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~ 275 (488)
.....+..|+.++.++|+.-|...-.+|..+-..-..... .+...+-..+.+.... ....-....+.+++.+..+...
T Consensus 171 id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~-~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~ 249 (392)
T 2jak_A 171 IDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRA-YIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFAL 249 (392)
T ss_dssp SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCS
T ss_pred CCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCC
Confidence 3457888899999999999999988888776544333323 3333444455555543 3344556778888888776431
Q ss_pred hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011328 276 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 355 (488)
Q Consensus 276 ~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~ 355 (488)
-.+.-...-....|+.+.+...-.........++..+...++.....+ +..|++.--..+..=...-+.-|..+.
T Consensus 250 PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~eleeiL 324 (392)
T 2jak_A 250 PLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNELEEIL 324 (392)
T ss_dssp SCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHSSCSSCCTTHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHH-----HHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence 111100101233445555544223333445556665555444432222 222222111112221122333344444
Q ss_pred cCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHH
Q 011328 356 SGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGL 394 (488)
Q Consensus 356 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L 394 (488)
...+++....+.. .+...+.+++.+++-.|.++|+...
T Consensus 325 e~~~~~~f~~i~~-~lF~~la~ci~S~hfqVAErAL~~w 362 (392)
T 2jak_A 325 DVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYW 362 (392)
T ss_dssp HTCCHHHHHHHHH-HHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred HhCCHHHHHHHHH-HHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 4444554444322 4677788888888888888877443
No 157
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=70.36 E-value=11 Score=31.78 Aligned_cols=74 Identities=18% Similarity=0.249 Sum_probs=52.0
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc-CCCHHHHHHHHHHHH
Q 011328 371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS-HDNTEIYEKAVKILE 449 (488)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~-~~~~~v~~~a~~~l~ 449 (488)
++..|..-+.+.++.++..++..|..+++..... |...+.+...++.|..+.. ..+.+|++++..++.
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~-----------f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~ 111 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP-----------VHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQ 111 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH-----------HHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHH-----------HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 3556666777899999999999999998875432 4455555555666666643 457899998888887
Q ss_pred HhcCCC
Q 011328 450 TYWVEE 455 (488)
Q Consensus 450 ~~~~~~ 455 (488)
.....-
T Consensus 112 ~W~~~f 117 (220)
T 1dvp_A 112 TWAYAF 117 (220)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 655443
No 158
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=68.32 E-value=1.4e+02 Score=32.58 Aligned_cols=264 Identities=11% Similarity=0.123 Sum_probs=122.0
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHH----H------hCCCHHHHHHhhC-C-CCHHHHHHHHHHHh
Q 011328 74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV----I------DHGAVPIFVRLLS-S-PTDDVREQAVWALG 141 (488)
Q Consensus 74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~----~------~~g~i~~L~~~L~-~-~~~~v~~~a~~~L~ 141 (488)
+...|.++|..+ +.+....+.+|.++.- +++....+ + +...+|.+++++- + ...++++ +...|.
T Consensus 193 v~~~L~~lL~~~--~~L~~~iLdaLs~L~L-s~~~l~~vr~~vl~~L~s~~~e~LP~lIkFLL~s~t~~~~~e-vI~~LR 268 (1323)
T 3s4w_B 193 VGKELGELLVQN--TSLTVPILDVFSSLRL-DPNFLSKIRQLVMGKLSSVRLEDFPVIVKFLLHSVTDTTSLE-VIAELR 268 (1323)
T ss_dssp HHHHHHHHHHHC--STTHHHHHHHHHHSCC-CHHHHHHHHHHHHHSTTSSCTTHHHHHHHHHHHSCSSTTHHH-HHHHHH
T ss_pred HHHHHHHHHhcC--cchHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhccCChhhhHHHHHHHHHhCCHhhHHH-HHHHHH
Confidence 455677777663 4678888899999887 55443333 2 2245788888653 3 2222222 222222
Q ss_pred h-hhCCC---ch----hHHHHHhcC--------------ChHHHHHHhcc--cccHhHHHHHHHHHHHhhcCCCCCChhh
Q 011328 142 N-VAGDS---PK----CRDLVLSNG--------------ALMPLLAQFNE--HAKLSMLRNATWTLSNFCRGKPQPLFEQ 197 (488)
Q Consensus 142 ~-l~~~~---~~----~~~~~~~~~--------------~l~~L~~ll~~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 197 (488)
. +-... |. ....+...| ...-++..+.. ..+..+...-+..+.+.....+.
T Consensus 269 ~~L~~~~~~~p~~~~~s~~~~k~~~~~~~~~~~~~s~~~~~~lild~lks~l~~~k~i~eAwlK~I~~~~~~~~h----- 343 (1323)
T 3s4w_B 269 ENLNVQQFILPSRIQASQSKLKSKGLASSSGNQENSDKDCIVLVFDVIKSAIRYEKTISEAWFKAIERIESAAEH----- 343 (1323)
T ss_dssp HHHHCC----------------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHGGGSTTC-----
T ss_pred HHcCccccccchhhhhhhhhhhccccccCCccccccccchHHHHHHHHHHHHhcChHHHHHHHHHHhCCCccccc-----
Confidence 1 11000 00 000000000 01112333311 11344445555556555443221
Q ss_pred hhchHHHHHHhh-ccCChhHHHHHHHHHHHhccCCchh---HH-------HHHHhCCHHHHHH----hcCCCCcchHhHH
Q 011328 198 TRPALPALERLI-HSNDDEVLTDACWALSYLSDGTNDK---IQ-------AVIEAGVCPRLVE----LLRHPSPSVLIPA 262 (488)
Q Consensus 198 ~~~~~~~l~~ll-~~~~~~v~~~al~~L~~l~~~~~~~---~~-------~~~~~~~l~~L~~----lL~~~~~~v~~~a 262 (488)
..++.++-++ .+.+...+..+-.++.+-.....-. .. .+++ ..++.++. ++.+.++.++..+
T Consensus 344 --k~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL~-~~f~siL~La~~Ll~S~~~~v~~Fg 420 (1323)
T 3s4w_B 344 --KSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVLK-DICPSILLLAQTLFHSQDQRIILFG 420 (1323)
T ss_dssp --CTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHT-TSHHHHHHHHHHHHTSSSHHHHHHH
T ss_pred --chhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 2333333222 2334445555666665555432111 11 1111 44455443 4567788888777
Q ss_pred HHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChh
Q 011328 263 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE 342 (488)
Q Consensus 263 ~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~ 342 (488)
...-..+....+...+ ..++..|+..+.++ ...-...|+.+|..++..+++....... ++..+++.+.+-+..
T Consensus 421 ~~lY~~lF~~fd~~~q----qeVl~~Lv~hi~sg-~~~eVd~ALdvL~~L~~~~~~~l~~~a~--~l~giLD~l~~l~~~ 493 (1323)
T 3s4w_B 421 SLLYKYAFKFFDTYCQ----QEVVGALVTHVCSG-TEAEVDTALDVLLELIVLNASAMRLNAA--FVKGILDYLENMSPQ 493 (1323)
T ss_dssp HHHHHHHHHSSCHHHH----HHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHCHHHHHHTHH--HHHGGGGGGGGCCHH
T ss_pred HHHHHHHHHhccchhH----HHHHHHHHhhhcCC-CcHHHHHHHHHHHHHHhcCHHHHhHHHH--HHHHHHHhhcCCCHH
Confidence 6665555554433211 23456666666555 3333445888888888755654443222 233334444444333
Q ss_pred HHHHHHHHHHHhcc
Q 011328 343 IKKEAAWAISNATS 356 (488)
Q Consensus 343 v~~~a~~aL~~l~~ 356 (488)
-.......|+.++.
T Consensus 494 QiRklf~iL~~laf 507 (1323)
T 3s4w_B 494 QIRKIFCILSTLAF 507 (1323)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 33344556665553
No 159
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=67.95 E-value=15 Score=29.13 Aligned_cols=76 Identities=12% Similarity=0.130 Sum_probs=53.7
Q ss_pred ChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHH-HHHhhc---CCCHHHHHHHH
Q 011328 371 CIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK-IENLQS---HDNTEIYEKAV 445 (488)
Q Consensus 371 ~i~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-L~~l~~---~~~~~v~~~a~ 445 (488)
++..|.+-++ ..++.++..|+..|..+++.+... |...+.+...++. |.++.. .+..+|++++.
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~-----------fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil 122 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHR-----------FHVLVASQDFVESVLVRTILPKNNPPTIVHDKVL 122 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHH-----------HHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHH-----------HHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHH
Confidence 4556667676 478899999999999998876432 5666666666666 566552 34578999999
Q ss_pred HHHHHhcCCCCC
Q 011328 446 KILETYWVEEDE 457 (488)
Q Consensus 446 ~~l~~~~~~~~~ 457 (488)
.++......-..
T Consensus 123 ~li~~W~~~f~~ 134 (157)
T 1elk_A 123 NLIQSWADAFRS 134 (157)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC
Confidence 999876655433
No 160
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=67.06 E-value=12 Score=29.02 Aligned_cols=71 Identities=17% Similarity=0.172 Sum_probs=50.9
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC---CCC--------HHHHHHHHHHHHH
Q 011328 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN---CPD--------PRIVTVCLEGLEN 396 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~---~~~--------~~v~~~al~~L~~ 396 (488)
+++.|.+-|+.+++.++.+|+..|..++.++++.....+.+.- ..+..+.+ .++ ..||..|-+++..
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~--~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~l 127 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNS--VAVRNLFHYKGHPDPLKGDALNKAVRETAHETISA 127 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTT--HHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhH--HHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHH
Confidence 6777888899999999999999999999999888888776632 22333322 122 3577777777766
Q ss_pred HHHh
Q 011328 397 ILKA 400 (488)
Q Consensus 397 l~~~ 400 (488)
|+..
T Consensus 128 l~d~ 131 (140)
T 1vdy_A 128 IFSE 131 (140)
T ss_dssp HTCC
T ss_pred HhCc
Confidence 6543
No 161
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=65.88 E-value=9.1 Score=30.37 Aligned_cols=72 Identities=11% Similarity=0.108 Sum_probs=54.6
Q ss_pred ChHHHHHHHh-cCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHH-HHhhcCC---CCHHHHHHHHHHHHHHHH
Q 011328 328 IIGPLVNLLL-NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKP-LCDLLNC---PDPRIVTVCLEGLENILK 399 (488)
Q Consensus 328 ~l~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~-L~~ll~~---~~~~v~~~al~~L~~l~~ 399 (488)
++..|.+-++ ++++.++..|+..|-.++.++.......+.+..+++. |+.++.. ++..|+..++..+..-..
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 4555667776 4688999999999999999998888877777778887 7777742 345788888877765543
No 162
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=65.35 E-value=86 Score=28.98 Aligned_cols=81 Identities=15% Similarity=0.068 Sum_probs=47.2
Q ss_pred hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328 109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 188 (488)
....++...+..|+.++.++++.-|+....+|..+-..-...|..+.. ..-..+.+.+.......-....+..++.+..
T Consensus 167 ~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fiye~e~~~GIaeLLeilgsIIn 245 (392)
T 2jak_A 167 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIIN 245 (392)
T ss_dssp HTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHHHH
T ss_pred hhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCCCHHHHHHHHHHHHh
Confidence 344556677889999999999999999888887775433333333322 1223344444322222223455566666665
Q ss_pred CC
Q 011328 189 GK 190 (488)
Q Consensus 189 ~~ 190 (488)
+.
T Consensus 246 gf 247 (392)
T 2jak_A 246 GF 247 (392)
T ss_dssp TC
T ss_pred cc
Confidence 54
No 163
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=61.45 E-value=1e+02 Score=28.58 Aligned_cols=237 Identities=10% Similarity=0.050 Sum_probs=126.8
Q ss_pred hhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHHHhHhhcCCchh
Q 011328 198 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQ 276 (488)
Q Consensus 198 ~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~ 276 (488)
...++-.|+.++.++|+.-|...-.+|..+-..-..... ++...+-..+...... ....-....+.+++.+..+...-
T Consensus 127 d~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~-~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~P 205 (403)
T 3fga_B 127 DQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRA-YIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALP 205 (403)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSS
T ss_pred CHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCC
Confidence 356778899999999999999988888877644433322 3332333344444322 22334456777777777654211
Q ss_pred hHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011328 277 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 277 ~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
.+.-...-....|+.+.+.+.-.........++..+...++.....++ ..|++.--..++.=...-+.-+..+..
T Consensus 206 Lkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi-----~~LLk~WP~tns~KevlFL~Ele~iLe 280 (403)
T 3fga_B 206 LKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV-----MALLKYWPKTHSPKEVMFLNELEEILD 280 (403)
T ss_dssp CCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHH-----HHHHHTCCSSCHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHH-----HHHHHhCCCCCcHHHHHHHHHHHHHHH
Confidence 100000011233444544442333344556666666665454332222 222221112233222233444555666
Q ss_pred CCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHH-----HHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHH
Q 011328 357 GGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE-----NILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIEN 431 (488)
Q Consensus 357 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~-----~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~ 431 (488)
..+++....+.. .+...+..++.+++-.|.+.|+.... +++.... ...+- -.+..|.+
T Consensus 281 ~~~~~~f~~i~~-~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~--------------~~IlP--ii~p~L~~ 343 (403)
T 3fga_B 281 VIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNA--------------AKILP--IMFPSLYR 343 (403)
T ss_dssp TCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTH--------------HHHHH--HHHHHHHH
T ss_pred hCCHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhH--------------HHHHH--HHHHHHHH
Confidence 555555444332 46788888999999999888885542 2221111 11110 11445555
Q ss_pred h-hcCCCHHHHHHHHHHHHHhcCCCCC
Q 011328 432 L-QSHDNTEIYEKAVKILETYWVEEDE 457 (488)
Q Consensus 432 l-~~~~~~~v~~~a~~~l~~~~~~~~~ 457 (488)
. .+|=|+.|+..+..++.-+.+.+.+
T Consensus 344 ~~~~HWn~~v~~l~~~vlk~l~e~d~~ 370 (403)
T 3fga_B 344 NSKTHWNKTIHGLIYNALKLFMEMNQK 370 (403)
T ss_dssp TTSCCSCHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHccCHHHHHHHHHHHHHHHHhCHH
Confidence 4 4566999999999999887765544
No 164
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=58.10 E-value=1.7e+02 Score=30.09 Aligned_cols=112 Identities=10% Similarity=0.057 Sum_probs=66.7
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc--cccHhHHHHHHHHHHHhhcCCC--C
Q 011328 117 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--HAKLSMLRNATWTLSNFCRGKP--Q 192 (488)
Q Consensus 117 ~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~~v~~~a~~~L~~l~~~~~--~ 192 (488)
+.|.+...+.+.+..+...+..++.+|+.-.|.+.+.++. +++..+..-|.. -..+.-...++.+|..++..-. .
T Consensus 340 l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP-~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~ 418 (799)
T 1vsy_4 340 FLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYD-KILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDK 418 (799)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHH-HHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTST
T ss_pred HHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehH-HHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCc
Confidence 3455555667789999999999999999877744444432 234444444422 2344445566666666654321 1
Q ss_pred CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 011328 193 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 229 (488)
Q Consensus 193 ~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~ 229 (488)
.-......++..++.-+..+|+.-...++..+..++.
T Consensus 419 ~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s 455 (799)
T 1vsy_4 419 LYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAA 455 (799)
T ss_dssp TGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHH
Confidence 1122344555555666667787777777777766653
No 165
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=56.31 E-value=43 Score=28.89 Aligned_cols=130 Identities=12% Similarity=0.038 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHH-hhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc
Q 011328 91 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE 169 (488)
Q Consensus 91 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 169 (488)
+.-++..+.-++.+ +... +.+..++. .+.+.++..+..++++++|+..+....+..+........++..+..
T Consensus 71 ~fP~lDllRl~~~~-~~~~------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~ 143 (253)
T 3gae_A 71 KTPAYDIVRLIVKK-LPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 143 (253)
T ss_dssp CHHHHHHHHHHGGG-CSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHHcC-CchH------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHH
Confidence 44566666666652 2221 23333332 3445678899999999999988776334454433223444544411
Q ss_pred -------cccHhHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhc---------cCChhHHHHHHHHHHHhccCC
Q 011328 170 -------HAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIH---------SNDDEVLTDACWALSYLSDGT 231 (488)
Q Consensus 170 -------~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~l~~ll~---------~~~~~v~~~al~~L~~l~~~~ 231 (488)
..+..++..++..+.|++-.. .... ......+.+.+. ..+.+....++-+++++...+
T Consensus 144 ~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~----~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 144 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSC----TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred HhhhcccCCchhHHHHHHHHHHHHHHHHhhccch----HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 235667778888888887542 1111 122333444433 137788888899999888543
No 166
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=55.24 E-value=92 Score=26.04 Aligned_cols=134 Identities=7% Similarity=-0.077 Sum_probs=78.6
Q ss_pred ccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHH
Q 011328 169 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 247 (488)
Q Consensus 169 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L 247 (488)
.+..-+.+..++..+....... ....++.+-.++.+ ++..+....+.+++.+....+.. ..+.+
T Consensus 65 ~s~~~E~r~la~~~l~~~~~~~-------~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~--------~~~~i 129 (220)
T 2b6c_A 65 QKTEREYQYVAIDLALQNVQRF-------SLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE--------LPTIF 129 (220)
T ss_dssp TSSSHHHHHHHHHHHHHTGGGC-------CHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG--------HHHHH
T ss_pred cCchhHHHHHHHHHHHHHHhhC-------CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH--------HHHHH
Confidence 4445556666666666543211 11233333344433 46666666556666665433321 23567
Q ss_pred HHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011328 248 VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 325 (488)
Q Consensus 248 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 325 (488)
.....+++.-+++.|+..+..... ..... ..++.+-..+.++ +.-|++...|+|..++..+++....++.
T Consensus 130 ~~W~~s~~~w~rR~ai~~~l~~~~--~~~~~-----~~~~i~~~~~~d~-~~yV~kavgW~Lr~~~k~~~~~v~~fl~ 199 (220)
T 2b6c_A 130 ALFYGAENFWNRRVALNLQLMLKE--KTNQD-----LLKKAIIYDRTTE-EFFIQKAIGWSLRQYSKTNPQWVEELMK 199 (220)
T ss_dssp HHHTTCSSHHHHHHHHHTTTTCGG--GCCHH-----HHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHH--CCCHH-----HHHHHHHHhCCCh-HHHHHHHHHHHHHHHHhhCHHHHHHHHh
Confidence 788889998888888764422211 11111 1234444466777 8899999999999999988886655553
No 167
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=55.08 E-value=32 Score=32.20 Aligned_cols=130 Identities=12% Similarity=0.042 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHhCCCHHHHH-HhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc-
Q 011328 91 QFEAAWALTNIASGTSENTRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN- 168 (488)
Q Consensus 91 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~- 168 (488)
+.-++..+.-++...+ .. +.+..++ ..+.+..+..+..++++++|+.......+..+........+++.+.
T Consensus 243 ~FPaLDLLRl~v~~p~-~~------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLP-YS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCS-CG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCc-hH------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 4556777766665222 11 1233333 3444567899999999999998776533334432222445555542
Q ss_pred ------ccccHhHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhc---------cCChhHHHHHHHHHHHhccCC
Q 011328 169 ------EHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIH---------SNDDEVLTDACWALSYLSDGT 231 (488)
Q Consensus 169 ------~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~l~~ll~---------~~~~~v~~~al~~L~~l~~~~ 231 (488)
...+..++..++..+.|++... .... ......+.+.+. ..+.+....++-+++++....
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~----~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1235567778888888887542 1111 233344555554 258889999999999998543
No 168
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=54.92 E-value=20 Score=27.31 Aligned_cols=95 Identities=18% Similarity=0.139 Sum_probs=60.7
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhcc
Q 011328 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNM 407 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~ 407 (488)
+++.|+..|++.+..+...++..|...- .. +++.+.+.+.++|..=+ .++|..++...+..
T Consensus 32 ~lp~LL~WLQD~NWPvA~~i~~~L~~~~----~~---------l~p~I~~vl~s~D~~W~---ywil~~lv~~~~~~--- 92 (134)
T 3ut4_A 32 IIFDLLKWLQDYNWPIAKDILPVVVLHQ----SI---------AMPHILTILQGNDIMWK---YWVIKLMIPYLIYP--- 92 (134)
T ss_dssp HHHHHHGGGSCTTSTTHHHHHHHHHHTH----HH---------HHHHHHHHHHSSCHHHH---HHHHHHHGGGCCHH---
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHcc----Hh---------hHHHHHHHHHcCChHHH---HHHHHHHHHcCCHH---
Confidence 5778999999999999888888887652 12 24555566677776433 33444444333321
Q ss_pred CCCCccchHHHHHHhhccHHHHHHhhcC-----CCHHHHHHHHHHHHHhcCC
Q 011328 408 GNTGGVNLFAQAIDDAEGLEKIENLQSH-----DNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 408 ~~~~~~~~~~~~l~~~g~~~~L~~l~~~-----~~~~v~~~a~~~l~~~~~~ 454 (488)
....+. ..|.++..+ ...++...|..+|++||++
T Consensus 93 --------~~~~l~-----~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~~~ 131 (134)
T 3ut4_A 93 --------NKQLVK-----SELERLSSLEIINEDIREIVNLSKDYLHFYYPD 131 (134)
T ss_dssp --------HHHHHH-----HHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC--
T ss_pred --------HHHHHH-----HHHHHHHhCCCcchHHHHHHHHHHHHHHHHccc
Confidence 133333 446666555 3678999999999999874
No 169
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=54.79 E-value=2e+02 Score=29.70 Aligned_cols=101 Identities=9% Similarity=0.017 Sum_probs=66.3
Q ss_pred ccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcc---CChhHHHHHHHHHHHhcc---CCchhHHHHHHhC
Q 011328 169 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS---NDDEVLTDACWALSYLSD---GTNDKIQAVIEAG 242 (488)
Q Consensus 169 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~---~~~~v~~~al~~L~~l~~---~~~~~~~~~~~~~ 242 (488)
.+.+..+...+..++.+|+.-.|........+++..+..-|.. ..+.-...++.++..++. ..+....++. .
T Consensus 349 fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~~yr~hl~--~ 426 (799)
T 1vsy_4 349 QNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDKLYRVHIT--N 426 (799)
T ss_dssp TCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTSTTGGGHHH--H
T ss_pred CcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCcccHHHHH--H
Confidence 6778888899999999999877666677777888888888876 455556667777776652 1111222222 3
Q ss_pred CHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011328 243 VCPRLVELLRHPSPSVLIPALRTVGNIVT 271 (488)
Q Consensus 243 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 271 (488)
++..++.-++.+++.-...++..+..++.
T Consensus 427 lL~l~LpgID~ND~~KT~~tl~fi~~i~s 455 (799)
T 1vsy_4 427 VLSMLVSKLDMNDTNLTSNLINGIVSIAA 455 (799)
T ss_dssp HHHHHHHTCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCcccHHHHHHHHHHHHHHHH
Confidence 45555555666676656666666666654
No 170
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=53.90 E-value=28 Score=31.80 Aligned_cols=130 Identities=12% Similarity=0.040 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHhCCCHHHHH-HhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc-
Q 011328 91 QFEAAWALTNIASGTSENTRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN- 168 (488)
Q Consensus 91 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~- 168 (488)
+.-++..+.-++... ... +.+..++ ..+.+..+..+..++++++|+..+....+..+........+++.+.
T Consensus 180 ~FP~LDLLRl~v~~~-~~~------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKL-PYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGC-SCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCC-ChH------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 455666776666522 211 2233333 3344567899999999999998776533333322111334444441
Q ss_pred ------ccccHhHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhc---------cCChhHHHHHHHHHHHhccCC
Q 011328 169 ------EHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIH---------SNDDEVLTDACWALSYLSDGT 231 (488)
Q Consensus 169 ------~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~l~~ll~---------~~~~~v~~~al~~L~~l~~~~ 231 (488)
...+..++..++..+.|++... .... ......+.+.+. ..+.+....++-+++++....
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~----~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1235567778888888887542 1111 233344555554 358889999999999988543
No 171
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=49.94 E-value=30 Score=27.16 Aligned_cols=76 Identities=12% Similarity=0.148 Sum_probs=50.9
Q ss_pred ChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHH-HHHhhc---CCCHHHHHHHH
Q 011328 371 CIKPLCDLLNC-PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK-IENLQS---HDNTEIYEKAV 445 (488)
Q Consensus 371 ~i~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-L~~l~~---~~~~~v~~~a~ 445 (488)
++..|..-+.. .++.++..|+..|..+++.+... |...+.+...++. |.++.. +...+|+++..
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~-----------fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil 122 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPS-----------FQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRIL 122 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHH-----------HHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHH-----------HHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 45556666653 57778888999999888776533 4555554444542 555543 23568999999
Q ss_pred HHHHHhcCCCCC
Q 011328 446 KILETYWVEEDE 457 (488)
Q Consensus 446 ~~l~~~~~~~~~ 457 (488)
.++.........
T Consensus 123 ~li~~Wa~~F~~ 134 (152)
T 3rru_A 123 NFIKTWSQGFPG 134 (152)
T ss_dssp HHHHHHHTCCSS
T ss_pred HHHHHHHHHhCC
Confidence 999988776555
No 172
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=47.04 E-value=2e+02 Score=27.45 Aligned_cols=145 Identities=14% Similarity=0.124 Sum_probs=90.7
Q ss_pred ccHHHHHHHhc-C-----CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011328 30 ESLPAMVAGVW-S-----DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 103 (488)
Q Consensus 30 ~~i~~l~~~L~-s-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~ 103 (488)
..++.+-+.|. + -|++. .+..+.++++.- .-+.+.+-=-+..+++.|+++. +.+...|+.++.
T Consensus 73 ~ll~~Ik~iL~~~~~~~~lD~~~---Li~Ll~~il~~~---~Fd~VLevysve~i~~aL~S~~-~~l~~~~ckVI~---- 141 (500)
T 3vld_A 73 PLLATIKRFLTSNVSYDSLNYDY---LLDVVDKLVPMA---DFDDVLEVYSAEDLVKALRSEI-DPLKVAACRVIE---- 141 (500)
T ss_dssp HHHHHHHHHHHCSSCCTTCCHHH---HHHHHHHHHHHS---CHHHHHHHSCHHHHHHHHTSSC-HHHHHHHHHHHH----
T ss_pred HHHHHHHHHHcCCccccccCHHH---HHHHHHHHHhcC---CHHHHHHhCCHHHHHHHHhcCC-hHHHHHHHHHhc----
Confidence 34555555662 2 13443 444455554432 2344555567888889999987 899999999887
Q ss_pred CCchhhHHHHhCCCHHHHHHhhCCCCH--H-HHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHH
Q 011328 104 GTSENTRVVIDHGAVPIFVRLLSSPTD--D-VREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT 180 (488)
Q Consensus 104 ~~~~~~~~~~~~g~i~~L~~~L~~~~~--~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~ 180 (488)
.++.+..+...+++..++.++-.++. . +....=.++..++.+ .-++..+.+. .+ +++...++..++.+....+
T Consensus 142 -~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Lssd-eLirrril~n-nl-~lL~~vK~~~~~i~~sRLL 217 (500)
T 3vld_A 142 -NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTD-ELIRRRLFDN-NL-PYLVSVKGRMETVSFVRLI 217 (500)
T ss_dssp -TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTT-TH-HHHHHHHHHCCHHHHHHHH
T ss_pred -ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCch-HHHHHHHHHH-hH-HHHHHHhcCCCceeHHHHH
Confidence 34556778888999999998866432 2 666666667777543 3245555553 34 4555554556666666666
Q ss_pred HHHHHhhcC
Q 011328 181 WTLSNFCRG 189 (488)
Q Consensus 181 ~~L~~l~~~ 189 (488)
..+.-+...
T Consensus 218 dll~il~~~ 226 (500)
T 3vld_A 218 DFLTIEFQF 226 (500)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcc
Confidence 666655544
No 173
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=42.18 E-value=1.2e+02 Score=23.50 Aligned_cols=77 Identities=12% Similarity=0.141 Sum_probs=57.1
Q ss_pred HHHHHHHHCCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc
Q 011328 361 EQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS 434 (488)
Q Consensus 361 ~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~ 434 (488)
.....+++.|++..+-.-|+- ++..++...+.+|.++ +- -.+.+.++|.-+.+..+..
T Consensus 52 ~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~l----PI------------~~e~Lk~SglGkvv~~l~k 115 (145)
T 2xpp_A 52 ALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTM----KI------------HKEHLVTSGVGKIVYFYSI 115 (145)
T ss_dssp TTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----CC------------CHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHC----CC------------CHHHhhcCCCCcchhhhhc
Confidence 345677888888888888772 4568888888888765 11 1566888988888888875
Q ss_pred CC--CHHHHHHHHHHHHHhcC
Q 011328 435 HD--NTEIYEKAVKILETYWV 453 (488)
Q Consensus 435 ~~--~~~v~~~a~~~l~~~~~ 453 (488)
++ .++.++.|..++++..+
T Consensus 116 ~~~et~~nk~la~~Li~~WsR 136 (145)
T 2xpp_A 116 NPKESKEVRASAKALVQKWTN 136 (145)
T ss_dssp CTTSCHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHH
Confidence 54 67899999999987543
No 174
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=41.78 E-value=30 Score=29.88 Aligned_cols=102 Identities=10% Similarity=0.021 Sum_probs=62.1
Q ss_pred cCCCChhHHHHHHHHHHHhcCCCch-hhHHHHhCCCHHHHHHhh----CC----CCHHHHHHHHHHHhhhhCCCchhHHH
Q 011328 83 SRDDFPQLQFEAAWALTNIASGTSE-NTRVVIDHGAVPIFVRLL----SS----PTDDVREQAVWALGNVAGDSPKCRDL 153 (488)
Q Consensus 83 ~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~~L~~~L----~~----~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (488)
.+.. +..+..++++++|+.. ++. .+..+........++..+ .+ .+..++-.++..+.|++......+.
T Consensus 100 ~~~~-~~~~ml~lR~l~NlF~-~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~- 176 (253)
T 3gae_A 100 GNKN-ITLTMLTVRILVNCFN-NENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS- 176 (253)
T ss_dssp TCSS-HHHHHHHHHHHHHHTT-CTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS-
T ss_pred CCCc-hhHHHHHHHHHHHccc-CCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc-
Confidence 3444 7899999999999998 555 566555433334444433 11 3677888899999998732100000
Q ss_pred HHhcCChHHHHHHhcc--------cccHhHHHHHHHHHHHhhcC
Q 011328 154 VLSNGALMPLLAQFNE--------HAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 154 ~~~~~~l~~L~~ll~~--------~~~~~v~~~a~~~L~~l~~~ 189 (488)
+......++..+.. ..|++....++-+++++...
T Consensus 177 --~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 177 --DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp --CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 11223345555431 24777888888888888754
No 175
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=40.88 E-value=47 Score=31.04 Aligned_cols=131 Identities=10% Similarity=0.044 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhccCCchhHHHHHHhCCHHHHH-HhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcc
Q 011328 217 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLV-ELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 295 (488)
Q Consensus 217 ~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~-~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~ 295 (488)
+-.++..++-++.+.+.. +.+..++ ..+.+..+..+..++++++|+..+.......+........+++.+..
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 555666776666543321 1222222 23344567788899999999987543233333222234455554421
Q ss_pred -------cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh---------cCChhHHHHHHHHHHHhccC
Q 011328 296 -------NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL---------NAEFEIKKEAAWAISNATSG 357 (488)
Q Consensus 296 -------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~---------~~~~~v~~~a~~aL~~l~~~ 357 (488)
..+..++..++..+.|++........ +......+..++. ..+.+....++.||++++..
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~ 390 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 390 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 11567888888888899863111000 1123455666665 24788889999999999853
No 176
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=39.98 E-value=32 Score=31.45 Aligned_cols=131 Identities=10% Similarity=0.043 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhccCCchhHHHHHHhCCHHHHH-HhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhc-
Q 011328 217 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLV-ELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT- 294 (488)
Q Consensus 217 ~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~-~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~- 294 (488)
+-.++..++-++.+.+.. +.+..++ ..+.+..+..+..++++++|+..+.......+........+++.+.
T Consensus 180 ~FP~LDLLRl~v~~~~~~-------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCChH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 555666666665443311 1222222 2333456778889999999998754322332222112233343331
Q ss_pred ------ccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh---------cCChhHHHHHHHHHHHhccC
Q 011328 295 ------QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL---------NAEFEIKKEAAWAISNATSG 357 (488)
Q Consensus 295 ------~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~---------~~~~~v~~~a~~aL~~l~~~ 357 (488)
...+..++..++..+.|++........ +......+..++. ..+.+....++.||++++..
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 111567888888888899863111000 0123455666665 34788899999999999853
No 177
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=39.02 E-value=38 Score=26.57 Aligned_cols=73 Identities=14% Similarity=0.062 Sum_probs=51.7
Q ss_pred ChHHHHHHHhc-CChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHH-HHhhcCC---CCHHHHHHHHHHHHHHHHh
Q 011328 328 IIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKP-LCDLLNC---PDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 328 ~l~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~-L~~ll~~---~~~~v~~~al~~L~~l~~~ 400 (488)
++..|..-+.. .++.++..|+..|-.++.++...+...+....++.. |..++.. .+..|+..++..+..-...
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 45556666664 477788889999999999998887777766566653 6666653 2347888888887766543
No 178
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=36.54 E-value=2.3e+02 Score=25.28 Aligned_cols=181 Identities=14% Similarity=0.149 Sum_probs=100.8
Q ss_pred chHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHH-Hhcc-------cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 011328 257 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD-LLTQ-------NYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 328 (488)
Q Consensus 257 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~-lL~~-------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 328 (488)
.+++..++.+.......+. .+.+ ....++.+++ +|.+ ..++++-.-...++..+...-.+....+.+. +
T Consensus 44 ~vKkeiLkLiet~i~~~~d-~~~v-~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~-V 120 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSND-PQMV-AENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDA-V 120 (321)
T ss_dssp HHHHHHHHHHHHHHTTCSC-HHHH-HHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHcCCC-HHHH-HHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHH-H
Confidence 3566666666666654332 2222 2345666665 3321 1134555555555555544323334444442 5
Q ss_pred hHHHHHHHhcC---ChhHHHHHHHHHHHhccCC-------CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 011328 329 IGPLVNLLLNA---EFEIKKEAAWAISNATSGG-------SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL 398 (488)
Q Consensus 329 l~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~-------~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~ 398 (488)
+..-+++++.+ -|+.|..=...|..+...+ .++..+. +++.++-..+++++++.+.++.++..++
T Consensus 121 Fe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fkl-----vidsiiWa~kH~~r~V~e~gL~il~~ll 195 (321)
T 1w9c_A 121 FECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKL-----VLDSIIWAFKHTMRNVADTGLQILFTLL 195 (321)
T ss_dssp HHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH-----HHHHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 66666777753 6778877777777776543 2333233 4677777889999999999999998887
Q ss_pred HhhhhhhccCCCCccchHHHHHHhhccHHHHHHh----hcCCCHHHHHHHHHHHHHhcCC
Q 011328 399 KAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL----QSHDNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l----~~~~~~~v~~~a~~~l~~~~~~ 454 (488)
....+... +...|-+.-.+..+++. .++.+.-....-..+|.++|.-
T Consensus 196 ~n~~~~~~---------~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~~ 246 (321)
T 1w9c_A 196 QNVAQEEA---------AAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNL 246 (321)
T ss_dssp HHHHHCHH---------HHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHH
T ss_pred HHHhcChH---------HHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHHH
Confidence 76543111 23333333334444443 4444444445556677777744
No 179
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=32.26 E-value=1.1e+02 Score=23.57 Aligned_cols=71 Identities=6% Similarity=-0.027 Sum_probs=50.3
Q ss_pred ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011328 285 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 285 ~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
++..+.+.+... .+.-|..+++++-.++..........+..++.+.+...+...++..|......+...-.
T Consensus 44 Iv~~i~~~i~k~-~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~ 114 (144)
T 1sz9_A 44 FVDAIESRIEKC-MPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLN 114 (144)
T ss_dssp HHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhccC-CHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhC
Confidence 455566666666 77888899999988887322224456667778888887777788888888877776653
No 180
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=31.44 E-value=1.8e+02 Score=22.46 Aligned_cols=77 Identities=10% Similarity=0.191 Sum_probs=53.1
Q ss_pred CchhhHHHHhCCCHHHHHHhhCC------CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccc--ccHhHH
Q 011328 105 TSENTRVVIDHGAVPIFVRLLSS------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH--AKLSML 176 (488)
Q Consensus 105 ~~~~~~~~~~~g~i~~L~~~L~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~v~ 176 (488)
.......+++.|++..+-..|+. ++..+|+..+.+|.++-.+ ++.+.+.|. ...+..+.++ +.++.+
T Consensus 50 k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI~----~e~Lk~Sgl-Gkvv~~l~k~~~et~~nk 124 (145)
T 2xpp_A 50 SKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKIH----KEHLVTSGV-GKIVYFYSINPKESKEVR 124 (145)
T ss_dssp CTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCC----HHHHHHHCH-HHHHHHHHHCTTSCHHHH
T ss_pred hHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCCC----HHHhhcCCC-CcchhhhhcCCccCHHHH
Confidence 45667888899999999999875 6789999999999998422 455555554 4444444343 355666
Q ss_pred HHHHHHHHHh
Q 011328 177 RNATWTLSNF 186 (488)
Q Consensus 177 ~~a~~~L~~l 186 (488)
+.|-..+..-
T Consensus 125 ~la~~Li~~W 134 (145)
T 2xpp_A 125 ASAKALVQKW 134 (145)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666555443
No 181
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=31.06 E-value=1.6e+02 Score=23.48 Aligned_cols=76 Identities=8% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHCCChHHHHhhcC------CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC
Q 011328 363 IKFLVSQGCIKPLCDLLN------CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD 436 (488)
Q Consensus 363 ~~~l~~~~~i~~L~~ll~------~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~ 436 (488)
...+++.|++..+-..|. -++..++...+.+|..+=-. .+.+.++|.-..+.-+..++
T Consensus 69 ~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lPI~----------------~e~Lk~SglGkvV~~l~k~~ 132 (170)
T 3nfq_A 69 ADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLPVK----------------TEHLKESGLGRVVIFYTKSK 132 (170)
T ss_dssp HHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCC----------------HHHHHHHSHHHHHHHHHHCT
T ss_pred HHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCCCC----------------HHHHhhCCCCceeeehhcCC
Q ss_pred --CHHHHHHHHHHHHHhcCC
Q 011328 437 --NTEIYEKAVKILETYWVE 454 (488)
Q Consensus 437 --~~~v~~~a~~~l~~~~~~ 454 (488)
.++.+..|..++++....
T Consensus 133 ~et~~nkrla~~Li~~WsRp 152 (170)
T 3nfq_A 133 RVEAQLARLAEKLIAEWTRP 152 (170)
T ss_dssp TSCHHHHHHHHHHHHHHTCC
T ss_pred cccHHHHHHHHHHHHHHHHH
No 182
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=26.93 E-value=1.1e+02 Score=25.74 Aligned_cols=83 Identities=11% Similarity=0.097 Sum_probs=0.0
Q ss_pred CHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHH
Q 011328 243 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA 322 (488)
Q Consensus 243 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 322 (488)
..+.+...+.++++-+++.|+..+.......+.... ...+...+.++ +.-|++...|+|..++..+++....
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~l~~~~~~d~~~~-------~~~i~~~~~d~-~~yV~kAvgW~Lr~~~k~~p~~v~~ 203 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQLKYKQKMDEELL-------FWIIGQLHSSK-EFFIQKAIGWVLREYAKTNPDVVWE 203 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTTTTCGGGCCHHHH-------HHHHHHHTTCC-CHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHhCCCHHHH-------HHHHHHhcCCH-HHHHHHHHHHHHHHHHhhCHHHHHH
Q ss_pred HHHcCChHHHH
Q 011328 323 IIEAGIIGPLV 333 (488)
Q Consensus 323 l~~~~~l~~L~ 333 (488)
+++..-++.+.
T Consensus 204 fl~~~~l~~~~ 214 (232)
T 3jxy_A 204 YVQNNELAPLS 214 (232)
T ss_dssp HHHHSCCCHHH
T ss_pred HHHHCCCCHHH
No 183
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=26.76 E-value=2.7e+02 Score=23.05 Aligned_cols=141 Identities=9% Similarity=-0.044 Sum_probs=86.7
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHH
Q 011328 76 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLV 154 (488)
Q Consensus 76 ~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~ 154 (488)
..+..+.+++. .+.+..|+..+........+ .-++.+-.++.. ++..+....+.+++.+....+..
T Consensus 58 ~~~~~L~~s~~-~E~r~la~~~l~~~~~~~~~--------~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~---- 124 (220)
T 2b6c_A 58 QEIEAYYQKTE-REYQYVAIDLALQNVQRFSL--------EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE---- 124 (220)
T ss_dssp HHHHHHHTSSS-HHHHHHHHHHHHHTGGGCCH--------HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG----
T ss_pred HHHHHHHcCch-hHHHHHHHHHHHHHHhhCCH--------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH----
Confidence 44556667666 78999999888876532111 112333344443 67788777666666665433321
Q ss_pred HhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchh
Q 011328 155 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK 234 (488)
Q Consensus 155 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~ 234 (488)
..+.+.... .+++.-+++.|+..+..... .......++.+-.++.+++.-|+..+.|+|..++..+++.
T Consensus 125 ----~~~~i~~W~-~s~~~w~rR~ai~~~l~~~~------~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~ 193 (220)
T 2b6c_A 125 ----LPTIFALFY-GAENFWNRRVALNLQLMLKE------KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQW 193 (220)
T ss_dssp ----HHHHHHHHT-TCSSHHHHHHHHHTTTTCGG------GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHH
T ss_pred ----HHHHHHHHH-cCCCHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHH
Confidence 123344555 77788888877764422111 1112344555555778889999999999999999888766
Q ss_pred HHHHHH
Q 011328 235 IQAVIE 240 (488)
Q Consensus 235 ~~~~~~ 240 (488)
...++.
T Consensus 194 v~~fl~ 199 (220)
T 2b6c_A 194 VEELMK 199 (220)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555553
No 184
>3btp_B Protein VIRE1; TIM barrel, unique topology, novel fold, structural genomics structural proteomics center, ISPC, crown GALL tumor; 2.30A {Agrobacterium tumefaciens str}
Probab=25.97 E-value=23 Score=21.73 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=7.1
Q ss_pred CCCC--ccccCCCCCCCCCCCCc
Q 011328 466 ATQA--GFGFAGNGLPVPSGGFN 486 (488)
Q Consensus 466 ~~~~--~~~~~~~~~~~~~~~~~ 486 (488)
.||+ .=.|.++| ||+||.
T Consensus 19 ~P~~~h~Ee~S~~h---~~nGFT 38 (63)
T 3btp_B 19 KPQEIHKEELSDHH---QSNGFT 38 (63)
T ss_dssp ------------CT---TTTTSC
T ss_pred chhhhhHHHhcccC---CCCCcc
Confidence 4444 44688899 999994
No 185
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=25.76 E-value=4.4e+02 Score=25.11 Aligned_cols=189 Identities=14% Similarity=0.132 Sum_probs=105.2
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCCh-h-HHHHHHHHHHHhcCCCch
Q 011328 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFP-Q-LQFEAAWALTNIASGTSE 107 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~-~-v~~~a~~~L~~l~~~~~~ 107 (488)
=.+..+++.|+|+++.+...|+..+.. ..+...+..++++..+++++-+.+.+ . +..+.=.++..++. +.=
T Consensus 116 ysve~i~~aL~S~~~~l~~~~ckVI~~------s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Lss-deL 188 (500)
T 3vld_A 116 YSAEDLVKALRSEIDPLKVAACRVIEN------SQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLST-DEL 188 (500)
T ss_dssp SCHHHHHHHHTSSCHHHHHHHHHHHHT------CSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTT-SHH
T ss_pred CCHHHHHHHHhcCChHHHHHHHHHhcc------cCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCc-hHH
Confidence 446778999999999999888888872 45567778889999999999776533 2 44444456666654 444
Q ss_pred hhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC--chhHHHHHhcCChHHHHHHhcccccHhHHHHHHH----
Q 011328 108 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS--PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW---- 181 (488)
Q Consensus 108 ~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~---- 181 (488)
.|..+.+. -.+.+...=++.++.+....+..+.-+...- +++.+.+.--+ -..+.+.+ + |+-+....+.
T Consensus 189 irrril~n-nl~lL~~vK~~~~~i~~sRLLdll~il~~~i~~~eF~~~Lfi~~-~~Ei~k~~-d--Dil~fI~ii~yYtk 263 (500)
T 3vld_A 189 IRRRLFDN-NLPYLVSVKGRMETVSFVRLIDFLTIEFQFISGPEFKDIIFCFT-KEEILKSV-E--DILVFIELVNYYTK 263 (500)
T ss_dssp HHHHHHTT-THHHHHHHHHHCCHHHHHHHHHHHHHHHTTCCTTTCCHHHHCCC-HHHHHHHT-T--SHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hHHHHHHHhcCCCceeHHHHHHHHHHHhcccCcccCCcceeecc-HHHHHhhh-c--chHHHHHHHHHHHH
Confidence 56666654 3566665555566666655555555554322 33333322111 11122222 1 2222222222
Q ss_pred HHHHhhcCCCCCC-hhhhhchHHHHHHhhccC--ChhHH----HHHHHHHHHhccCC
Q 011328 182 TLSNFCRGKPQPL-FEQTRPALPALERLIHSN--DDEVL----TDACWALSYLSDGT 231 (488)
Q Consensus 182 ~L~~l~~~~~~~~-~~~~~~~~~~l~~ll~~~--~~~v~----~~al~~L~~l~~~~ 231 (488)
.+..+.. ....+ .....+.++.+.++..+. .++++ ......++.++..+
T Consensus 264 Ll~~~~~-~~~~w~l~~i~p~l~~~~~ly~~~d~~~dv~~f~~s~l~~lfa~lSyl~ 319 (500)
T 3vld_A 264 FLLEIRN-QDKYWALRHVKKILPVFAQLFEDTENYPDVRAFSTNCLLQLFAEVSRIE 319 (500)
T ss_dssp HHHHHHH-TTCGGGHHHHGGGHHHHHHHHHCTTTCHHHHHHSHHHHHHHHHHHTTSS
T ss_pred HHHHhcc-cchHHHHHHhHHHHHHHHHHhcCchhhhHHHHHhHHHHHHHHHHHhhcc
Confidence 2222211 11112 224567888888888653 45553 34555566666543
No 186
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=25.42 E-value=1.9e+02 Score=31.65 Aligned_cols=129 Identities=10% Similarity=-0.004 Sum_probs=73.0
Q ss_pred ccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHH
Q 011328 169 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 248 (488)
Q Consensus 169 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~ 248 (488)
.+.++.++.-+......+.... .......++..|+..+-+++..-...|+.+|..++...+....... -.+..++
T Consensus 410 ~S~~~~v~~Fg~~lY~~lF~~f---d~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~~a--~~l~giL 484 (1323)
T 3s4w_B 410 HSQDQRIILFGSLLYKYAFKFF---DTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRLNA--AFVKGIL 484 (1323)
T ss_dssp TSSSHHHHHHHHHHHHHHHHSS---CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHTH--HHHHGGG
T ss_pred hCCCHHHHHHHHHHHHHHHHhc---cchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhHHH--HHHHHHH
Confidence 5667777777766666655543 1233467778888877777666666799999988876554333211 2344455
Q ss_pred HhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHH
Q 011328 249 ELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 303 (488)
Q Consensus 249 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~ 303 (488)
+.+.+-+..-.+....+++.++..........+.....-.+-+.|.+. +...|+
T Consensus 485 D~l~~l~~~QiRklf~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~-~~~~Kr 538 (1323)
T 3s4w_B 485 DYLENMSPQQIRKIFCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSST-VFKYKL 538 (1323)
T ss_dssp GGGGGCCHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCS-SHHHHH
T ss_pred HhhcCCCHHHHHHHHHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCC-chhhhh
Confidence 555555555555668888888763321111011222333344555555 555554
No 187
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=25.15 E-value=94 Score=22.41 Aligned_cols=36 Identities=11% Similarity=0.200 Sum_probs=30.3
Q ss_pred HHHHHhhccHHHHHHhhcC-CCHHHHHHHHHHHHHhc
Q 011328 417 AQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILETYW 452 (488)
Q Consensus 417 ~~~l~~~g~~~~L~~l~~~-~~~~v~~~a~~~l~~~~ 452 (488)
.+.|++.+.=..+..|..+ ++++|+..|..++...-
T Consensus 47 ~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~WK 83 (103)
T 1wjt_A 47 IQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWK 83 (103)
T ss_dssp HHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence 6778888888889999876 89999999999987543
No 188
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=21.47 E-value=2.7e+02 Score=21.36 Aligned_cols=74 Identities=8% Similarity=-0.031 Sum_probs=53.0
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC
Q 011328 199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 272 (488)
Q Consensus 199 ~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 272 (488)
..++..+.+.+....+.-+-.++..+-.++.+........+..++.+.+.......++..+......+.-.-..
T Consensus 42 ~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 42 QYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNP 115 (144)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCc
Confidence 46667777777777888888888888888866544445566667777777777666777887777777666543
No 189
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=20.02 E-value=1.9e+02 Score=21.67 Aligned_cols=61 Identities=7% Similarity=0.038 Sum_probs=41.1
Q ss_pred hHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 011328 160 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG 230 (488)
Q Consensus 160 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~ 230 (488)
+...+.-| ..+.++++....|++.+--. ...++..+.+.+....++-+...+..+..++.+
T Consensus 10 l~~~L~~L-~~s~~sI~~~s~w~l~h~~~---------a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~n 70 (132)
T 4flb_A 10 LDRKFQSV-TNTMESIQGLSSWCIENKKH---------HSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQN 70 (132)
T ss_dssp HHHHHHHC-CSSHHHHHHHHHHHHHTGGG---------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-cccHHHHHHHHHHHHHhHHH---------HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Confidence 34455556 55667788888888886432 245667777777777777777777777777643
Done!