BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011330
(488 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GWD|A Chain A, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With Mg2+ And L-glutamate
Length = 449
Score = 841 bits (2172), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/449 (88%), Positives = 421/449 (93%)
Query: 40 AASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIA 99
AASPPTE+AVV TEPLT+EDL+ YLASGCK KEKWRIGTEHEKFGFE TL PMKY+QIA
Sbjct: 1 AASPPTEEAVVATEPLTREDLIAYLASGCKSKEKWRIGTEHEKFGFEVNTLRPMKYDQIA 60
Query: 100 ELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHL 159
ELLNSIAERF+WEKVMEGD IIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHL
Sbjct: 61 ELLNSIAERFEWEKVMEGDKIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHL 120
Query: 160 YQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTV 219
YQVKAVAEEMGIGFLG+GFQPKW +DIP MPKGRY+IMRNYMPKVGSLGLDMM RTCTV
Sbjct: 121 YQVKAVAEEMGIGFLGMGFQPKWRREDIPTMPKGRYDIMRNYMPKVGSLGLDMMLRTCTV 180
Query: 220 QVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAG 279
QVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNG+LSMRSHIWTDTD +R G
Sbjct: 181 QVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGFLSMRSHIWTDTDKDRTG 240
Query: 280 MLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLN 339
MLPFVFDDSFGFEQYVDYALDVPMYF YR KY+DC GM+FR FLAGKLPCLPGELPT N
Sbjct: 241 MLPFVFDDSFGFEQYVDYALDVPMYFAYRNGKYVDCTGMTFRQFLAGKLPCLPGELPTYN 300
Query: 340 DWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEDSLQNVLDMTADWT 399
DWENHLTTIFPEVRLKRY+EMRGADGGPWRRLCALPAFWVGLLYDED LQ+VLD+TADWT
Sbjct: 301 DWENHLTTIFPEVRLKRYMEMRGADGGPWRRLCALPAFWVGLLYDEDVLQSVLDLTADWT 360
Query: 400 TGERQMLRNKVPKTGLKTPFRDGLLRHVAQDVLKLSKDGLERRGFKETGFLNEVAEVVRT 459
ER+MLRNKVP TGLKTPFRDGLL+HVA+DVLKL+KDGLERRG+KE GFLN V EVVRT
Sbjct: 361 PAEREMLRNKVPVTGLKTPFRDGLLKHVAEDVLKLAKDGLERRGYKEVGFLNAVTEVVRT 420
Query: 460 GVTPAEKLLDMYHGKWRESVDPVFEELLY 488
GVTPAE LL+MY+G+W +SVDPVF+ELLY
Sbjct: 421 GVTPAENLLEMYNGEWGQSVDPVFQELLY 449
>pdb|2GWC|A Chain A, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
pdb|2GWC|B Chain B, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
pdb|2GWC|C Chain C, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
pdb|2GWC|D Chain D, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
pdb|2GWC|E Chain E, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
pdb|2GWC|F Chain F, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
pdb|2GWC|G Chain G, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
pdb|2GWC|H Chain H, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
Length = 449
Score = 778 bits (2009), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/449 (84%), Positives = 403/449 (89%)
Query: 40 AASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIA 99
AASPPTE+AVV TEPLT+EDL+ YLASGCK KEKWRIGTEHEKFGFE TL P KY+QIA
Sbjct: 1 AASPPTEEAVVATEPLTREDLIAYLASGCKSKEKWRIGTEHEKFGFEVNTLRPXKYDQIA 60
Query: 100 ELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHL 159
ELLNSIAERF+WEKV EGD IIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHL
Sbjct: 61 ELLNSIAERFEWEKVXEGDKIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHL 120
Query: 160 YQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTV 219
YQVKAVAEE GIGFLG GFQPKW +DIP PKGRY+I RNY PKVGSLGLD RTCTV
Sbjct: 121 YQVKAVAEEXGIGFLGXGFQPKWRREDIPTXPKGRYDIXRNYXPKVGSLGLDXXLRTCTV 180
Query: 220 QVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAG 279
QVNLDFSSEAD IRKFRAGLALQPIATALFANSPFTEGKPNG+LS RSHIWTDTD +R G
Sbjct: 181 QVNLDFSSEADXIRKFRAGLALQPIATALFANSPFTEGKPNGFLSXRSHIWTDTDKDRTG 240
Query: 280 MLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLN 339
LPFVFDDSFGFEQYVDYALDVP YF YR KY+DC G +FR FLAGKLPCLPGELPT N
Sbjct: 241 XLPFVFDDSFGFEQYVDYALDVPXYFAYRNGKYVDCTGXTFRQFLAGKLPCLPGELPTYN 300
Query: 340 DWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEDSLQNVLDMTADWT 399
DWENHLTTIFPEVRLKRY E RGADGGPWRRLCALPAFWVGLLYDED LQ+VLD+TADWT
Sbjct: 301 DWENHLTTIFPEVRLKRYXEXRGADGGPWRRLCALPAFWVGLLYDEDVLQSVLDLTADWT 360
Query: 400 TGERQMLRNKVPKTGLKTPFRDGLLRHVAQDVLKLSKDGLERRGFKETGFLNEVAEVVRT 459
ER+ LRNKVP TGLKTPFRDGLL+HVA+DVLKL+KDGLERRG+KE GFLN V EVVRT
Sbjct: 361 PAEREXLRNKVPVTGLKTPFRDGLLKHVAEDVLKLAKDGLERRGYKEVGFLNAVTEVVRT 420
Query: 460 GVTPAEKLLDMYHGKWRESVDPVFEELLY 488
GVTPAE LL+ Y+G+W +SVDPVF+ELLY
Sbjct: 421 GVTPAENLLEXYNGEWGQSVDPVFQELLY 449
>pdb|3G7R|A Chain A, Crystal Structure Of Sco4454, A Tetr-Family
Transcriptional Regulator From Streptomyces Coelicolor
pdb|3G7R|B Chain B, Crystal Structure Of Sco4454, A Tetr-Family
Transcriptional Regulator From Streptomyces Coelicolor
Length = 221
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 406 LRNKVPKTGLKTPFRDGLLRHVAQDVLKLSKDGLERRGFKETGFLNEVAE 455
+R +V +P DG +R VA+ ++ DG+ GF+ FLN VAE
Sbjct: 94 IRAQVTAARGSSPAADGQVRAVARSIV----DGIRSPGFRGCAFLNAVAE 139
>pdb|3KUX|A Chain A, Structure Of The Ypo2259 Putative Oxidoreductase From
Yersinia Pestis
Length = 352
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 290 GFEQYVDYALDVPMYFVYRKKKYIDCAGMSFR---------DFLAGKLPCLPGELPTLND 340
G VD V + K++ D AG+ DFL K G L +
Sbjct: 91 GKHVVVDKPFTVTLSQANALKEHADDAGLLLSVFHNRRWDSDFLTLKTLLAEGSLGNVVY 150
Query: 341 WENHLTTIFPEVRLKRYLEMRGADGGPWRRL 371
+E+H PE+R +R+ E GA GG W L
Sbjct: 151 FESHFDRYRPEIR-QRWREQAGAGGGIWYDL 180
>pdb|1DAB|A Chain A, The Structure Of Bordetella Pertussis Virulence Factor
P.69 Pertactin
Length = 539
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 209 GLDMMFRTCTVQVNLDFSSEADMIRKFRA-------GLALQPIATALFANSPFTEG-KPN 260
G +++R V L + AD A G ++ P+ AL + + +T +
Sbjct: 337 GKALLYRVLPEPVKLTLTGGADAQGDIVATELPSIPGTSIGPLDVALASQARWTGATRAV 396
Query: 261 GYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQ 293
LS+ + W TDN+ G L D S F+Q
Sbjct: 397 DSLSIDNATWVMTDNSNVGALRLASDGSVDFQQ 429
>pdb|3KZH|A Chain A, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
pdb|3KZH|B Chain B, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
Length = 328
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 11/104 (10%)
Query: 86 EFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPL 145
+F T+ P ++E AE+L + + +Y +GL K ISL+ G F G
Sbjct: 182 DFHTIKPNRHE--AEILAGFPITDTDDLIKASNYFLGLGIKKVFISLDADGIFYNDGV-- 237
Query: 146 ETLHQTCAEVNSHLYQVKAV--AEEMGIGFLGIGFQPKWGLKDI 187
+C ++ + VK V A + + LG G+ K ++DI
Sbjct: 238 -----SCGKIKATEVDVKNVTGAGDSFVAGLGYGYXNKXPIEDI 276
>pdb|3V97|A Chain A, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sah Binding
pdb|3V97|B Chain B, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sah Binding
Length = 703
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 423 LLRHVAQDVLKLSKDGLERRGFKETGFLNEVAE------VVRTGVTPAEKLLD 469
L + A L LS DGL RG+++ + + E V+R+G P LLD
Sbjct: 144 LHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQPGTPLLD 196
>pdb|3V8V|A Chain A, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sam Binding
pdb|3V8V|B Chain B, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sam Binding
Length = 702
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 423 LLRHVAQDVLKLSKDGLERRGFKETGFLNEVAE------VVRTGVTPAEKLLD 469
L + A L LS DGL RG+++ + + E V+R+G P LLD
Sbjct: 143 LHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQPGTPLLD 195
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,141,188
Number of Sequences: 62578
Number of extensions: 663601
Number of successful extensions: 1173
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1171
Number of HSP's gapped (non-prelim): 8
length of query: 488
length of database: 14,973,337
effective HSP length: 103
effective length of query: 385
effective length of database: 8,527,803
effective search space: 3283204155
effective search space used: 3283204155
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)