Query 011330
Match_columns 488
No_of_seqs 168 out of 1127
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 05:54:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011330.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011330hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gwd_A Glutamate cysteine liga 100.0 1.6E-94 5.5E-99 766.1 35.3 449 40-488 1-449 (449)
2 1r8g_A Hypothetical protein YB 100.0 3.7E-63 1.3E-67 514.3 26.3 348 69-486 7-369 (372)
3 3ln6_A Glutathione biosynthesi 100.0 2.2E-29 7.5E-34 281.1 20.1 348 72-482 17-405 (750)
4 1va6_A Glutamate--cysteine lig 100.0 8.7E-29 3E-33 263.2 18.7 353 61-471 9-455 (518)
5 3ln7_A Glutathione biosynthesi 99.9 2.4E-25 8.4E-30 248.1 21.2 329 73-471 18-397 (757)
6 3nzt_A Glutamate--cysteine lig 99.9 8.8E-24 3E-28 224.1 20.2 345 63-471 19-455 (525)
7 3ig5_A Glutamate-cysteine liga 99.6 2.2E-14 7.5E-19 153.6 17.8 208 57-278 27-325 (692)
8 2d3a_A Glutamine synthetase; l 97.2 0.00091 3.1E-08 68.3 9.7 114 51-182 103-238 (356)
9 3fky_A Glutamine synthetase; b 97.2 0.0038 1.3E-07 64.0 14.1 104 51-174 107-234 (370)
10 1f52_A Glutamine synthetase; A 97.2 0.0025 8.7E-08 67.4 13.0 91 128-250 207-313 (468)
11 2ojw_A Glutamine synthetase; a 97.1 0.0054 1.8E-07 63.2 13.7 103 51-174 129-256 (384)
12 3qaj_A Glutamine synthetase; A 96.9 0.0093 3.2E-07 62.6 13.5 105 51-174 105-230 (444)
13 4hpp_A Probable glutamine synt 96.8 0.0085 2.9E-07 62.8 12.5 104 51-174 105-221 (443)
14 3ng0_A Glutamine synthetase; G 96.7 0.014 4.9E-07 61.6 13.5 46 128-174 210-257 (473)
15 4acf_A Glutamine synthetase 1; 96.6 0.018 6E-07 61.2 13.0 46 128-174 222-269 (486)
16 3o6x_A Glutamine synthetase; t 95.4 0.034 1.2E-06 61.1 8.7 50 128-181 281-331 (729)
17 2j9i_A Glutamate-ammonia ligas 90.4 0.064 2.2E-06 55.8 0.8 115 51-182 96-221 (421)
18 2bp3_S Platelet glycoprotein I 39.2 7.5 0.00026 23.3 0.3 15 344-358 8-22 (26)
19 1j3g_A AMPD protein, AMPD; mix 23.3 32 0.0011 31.1 1.9 42 70-113 107-148 (187)
No 1
>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, R regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A*
Probab=100.00 E-value=1.6e-94 Score=766.10 Aligned_cols=449 Identities=88% Similarity=1.460 Sum_probs=419.8
Q ss_pred ecCCCCCCcccCCCCCCHHHHHHHHHcCCCCCCCCeeEEEeccccccCCCCCCCChhHHHHHHHHHhhccccchhccccc
Q 011330 40 AASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDY 119 (488)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~k~~~~~~iGvE~E~~~vd~~t~~~~~~~~i~~lL~~l~~~~g~~~~~e~g~ 119 (488)
|+|||++.++..++|.++++|++||++|||+++.++||+|+|+++||.+|+++++++.+.++|+.+.+.+||++..++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iGvE~E~~lVd~~~~~~~~~~~~~~lL~~l~~~~g~~~~~~~~~ 80 (449)
T 2gwd_A 1 AASPPTEEAVVATEPLTREDLIAYLASGCKSKEKWRIGTEHEKFGFEVNTLRPMKYDQIAELLNSIAERFEWEKVMEGDK 80 (449)
T ss_dssp -------------CCCCHHHHHHHHHTTCCCGGGCCEEEEEEEEEEETTTCCBCCHHHHHHHHHHHHHHHTCEEEEETTE
T ss_pred CCCCCCcccccCCCccCHHHHHHHHHhcCCCCCCCeEEEEeEEEeeecCCCCCCChHHHHHHHHHHHHhhccCccccccc
Confidence 68999999999999988999999999999999999999999999999999999998777999999988899999999999
Q ss_pred ccccccCCceeeecCCcceeeecCccCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCCCCCCCCCCCchHHHHHH
Q 011330 120 IIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMR 199 (488)
Q Consensus 120 ~igl~~~~~~islEp~~qiEis~~p~~~l~~~~~el~~~l~~l~~~a~~~g~~ll~~G~~P~~~~~~~~~~pk~RY~~m~ 199 (488)
+||+++++.+|++||++|||++|+||.+++++++++...++.++++++++|+.|+++|+||++++.+++++||+||+.|.
T Consensus 81 ~~~l~~~~~~i~~E~~~qiEl~t~p~~~~~e~~~~l~~~~~~~~~~a~~~g~~l~~~G~~P~~~~~~~~~~~~~RY~~m~ 160 (449)
T 2gwd_A 81 IIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGMGFQPKWRREDIPTMPKGRYDIMR 160 (449)
T ss_dssp EEEEEETTEEEEECTTCCEEEECCCBSSHHHHHHHHHHHHHHHHHHHHHHTEEEECCSBCSSCCGGGSCCCSCHHHHHHH
T ss_pred cccccCCCceEEecCCceEEecCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCceeeccCCCCCCccccCCCCchHHHHHH
Confidence 99999988999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred HhcccccchhhhhhcccceeEEeeCCCCHHHHHHHHHHhhhhhHHHHHHhhCCCCCCCCCCCCccccHHHHhcCCCCCCC
Q 011330 200 NYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAG 279 (488)
Q Consensus 200 ~~~~~~g~~g~~mm~~t~s~QVhld~~~e~d~i~~~n~~~~l~P~l~AL~ANSPf~~G~~tg~~s~R~~iw~~~~~~RtG 279 (488)
++|+++|.+|++||..|||+||||+++|++++++++|.+++++|+++|||||||||+|++|||+|+|+.+|+++|++|+|
T Consensus 161 ~~~~~~g~~g~~mm~~~~g~qVhl~~~~~~~~~~~~~~~~~~~P~llALsAnSPf~~G~~tg~~S~R~~~w~~~~~~r~G 240 (449)
T 2gwd_A 161 NYMPKVGSLGLDMMLRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGFLSMRSHIWTDTDKDRTG 240 (449)
T ss_dssp HHGGGTCSSHHHHHHHBCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHCCBCEETTEECSCSBHHHHHTTSSCGGGCS
T ss_pred HHHHHhchhHHHHhhcceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCcCCCcchHHHHHhhCCCCcCC
Confidence 99988899999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred CCCCCCCChhhHHHHHHHHhcccceeEeecCceecCCCCcHHHhhhCCCCCCCCCCCChhhhhhccCCCCCcccccceee
Q 011330 280 MLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLE 359 (488)
Q Consensus 280 ~~P~~F~~~~~fe~y~~~ll~~p~~~v~r~g~~i~~~~~~~~d~~~~~~~~~~g~rPt~~d~~~hlst~fp~VR~k~~IE 359 (488)
++|+.|+++++|++|+++++++||||+.++|.+++..+.+|+|||++.++.+.|+.|+++||.+|+||+||+||+|+|||
T Consensus 241 ~~p~~f~~~~~~e~yv~~l~~~~~~~v~~~g~~~~~~~~~f~~~l~~~l~~~~~~~p~~~d~~~~~st~~~~vRpk~~iE 320 (449)
T 2gwd_A 241 MLPFVFDDSFGFEQYVDYALDVPMYFAYRNGKYVDCTGMTFRQFLAGKLPCLPGELPTYNDWENHLTTIFPEVRLKRYME 320 (449)
T ss_dssp CCGGGGSTTCSHHHHHHHHHHSCEEEEEETTEEEEEEEECHHHHHTTCCTTSTTCCCCHHHHHHHHTTCCCSEEESSSEE
T ss_pred CCCcccCCccCHHHHHHHHHcCCceEeecCCccccCCcchHHHhhhcccccccCCCCCHHHHHhhhcccCcccCcCCceE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCchHHHhHHHHHHHHhhhchhhccchhhcCCcccHHHHHHHHhhhcccCCCCccCCccHHHHHHHHHHHHHHHH
Q 011330 360 MRGADGGPWRRLCALPAFWVGLLYDEDSLQNVLDMTADWTTGERQMLRNKVPKTGLKTPFRDGLLRHVAQDVLKLSKDGL 439 (488)
Q Consensus 360 iR~~D~~p~~~~~A~aAl~~GLl~~~~~~~~~~~~~~~~~~~~~~~lr~~aar~Gl~a~~~~~~l~~~~~~LL~~a~~gL 439 (488)
||++|+||+++++|++||++||+++..+++..+...++|..++.+.+|.+|+|+||++.+.+.++++++.+||++++++|
T Consensus 321 ~R~~D~~p~~~~~a~aAl~~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~AaR~Gl~a~~~~~~~~~~~~~ll~~a~~~L 400 (449)
T 2gwd_A 321 MRGADGGPWRRLCALPAFWVGLLYDEDVLQSVLDLTADWTPAEREMLRNKVPVTGLKTPFRDGLLKHVAEDVLKLAKDGL 400 (449)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHHSSHHHHHHHHHHTTTCCHHHHHHHHHHHHHHGGGSEETTEEHHHHHHHHHHHHHHHH
T ss_pred eecCCCCCcHHHHHHHHHHHHHHhhHHhhhhhHhhcCCcCHHHHHHHHHHHHHhccCCccCCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998877778877889988876666779999999999989999999999999999999
Q ss_pred HhcCCchhhhHHHHHHHHHcCCCHHHHHHHHHcCChhhhHHHHHHhhcC
Q 011330 440 ERRGFKETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY 488 (488)
Q Consensus 440 ~~~G~~e~~~L~~l~~~l~~g~t~A~~~l~~~~~~~~~~v~~~~~e~~~ 488 (488)
.++|.++..||+.|.+++++|+|+|+||++.|+++|.++|+.+++|++|
T Consensus 401 ~~~g~~~~~~l~~l~~~~~~g~t~A~~~l~~~~~~~~~~v~~~~~~~~~ 449 (449)
T 2gwd_A 401 ERRGYKEVGFLNAVTEVVRTGVTPAENLLEMYNGEWGQSVDPVFQELLY 449 (449)
T ss_dssp HHHTSCCGGGGHHHHHHHHHTCCHHHHHHHHHHTTTTTCSTTHHHHTBC
T ss_pred HHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHHhccccCcHHHHHHHhcC
Confidence 9999887789999999999999999999999999999999999999988
No 2
>1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} SCOP: d.128.1.3 PDB: 1tt4_A
Probab=100.00 E-value=3.7e-63 Score=514.27 Aligned_cols=348 Identities=15% Similarity=0.120 Sum_probs=289.5
Q ss_pred CCCCCCeeEEEeccccccCCCCCCCChhHHHHHHHHHhhccccchhcccccccccccCCceeeecC-CcceeeecCccCC
Q 011330 69 KPKEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEP-GGQFELSGAPLET 147 (488)
Q Consensus 69 k~~~~~~iGvE~E~~~vd~~t~~~~~~~~i~~lL~~l~~~~g~~~~~e~g~~igl~~~~~~islEp-~~qiEis~~p~~~ 147 (488)
|+++.+++|||+|+++||++|+++++++ .++|+.+.+.+ .+..|+.|+ ++|||++|+||.+
T Consensus 7 ~~~~~~~~GiE~E~~~Vd~~~g~~~~~~--~~~l~~~~~~~----------------~~~~it~E~~~~qlEl~t~p~~~ 68 (372)
T 1r8g_A 7 HVSEPFTLGIELEMQVVNPPGYDLSQDS--SMLIDAVKNKI----------------TAGEVKHDITESMLELATDVCRD 68 (372)
T ss_dssp CCCCTTCEEEEEEEEEEETTTTEECSCC--HHHHTTTSSSC----------------SSSEEEECSSSSEEEEECCSBSS
T ss_pred CCCCCCceEEEEEEeeECCCCCCcCccH--HHHHHhchhcc----------------cCCcccchhhccEEEecCCCCCC
Confidence 4588899999999999999999999988 78886543321 135799997 8999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCCCCCCCCCCCchHHHHHHHhcccccchhhhhhcccceeEEeeCCCC
Q 011330 148 LHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSS 227 (488)
Q Consensus 148 l~~~~~el~~~l~~l~~~a~~~g~~ll~~G~~P~~~~~~~~~~pk~RY~~m~~~~~~~g~~g~~mm~~t~s~QVhld~~~ 227 (488)
+++++++|.+.++.+.++++++|+.|++.|+||++++.+.+++||+||+.|.++| |..++.|| |||+||||++++
T Consensus 69 ~~e~~~~L~~~~~~~~~~a~~~g~~l~~~g~~P~~~~~~~~i~~~~rY~~l~~~~---g~~~~~~~--i~g~hvhv~~~~ 143 (372)
T 1r8g_A 69 INQAAGQFSAMQKVVLQAATDHHLEICGGGTHPFQKWQRQEVCDNERYQRTLENF---GYLIQQAT--VFGQHVHVGCAS 143 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEECCSBCSSCCC----------------CC---GGGGCSCC--BCEEEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEecCCCCCCCCccCCCCCchHHHHHHHHH---HHHHHhhc--eeeEEEEeCCCC
Confidence 9999999999999999999999999999999999988899999999999999999 44577788 999999999999
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhhCCCCCCCCCCCCccccHHHHhcCCCCCCCCCCCCCCChhhHHHHHHHHhcccceeEe
Q 011330 228 EADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVY 307 (488)
Q Consensus 228 e~d~i~~~n~~~~l~P~l~AL~ANSPf~~G~~tg~~s~R~~iw~~~~~~RtG~~P~~F~~~~~fe~y~~~ll~~p~~~v~ 307 (488)
++++++++|.++.++|+++|||||||||+|++|||+|+|+.+|++++ ++|+ |+.|+++++|++|+++++++++
T Consensus 144 ~~~~~~~~~~~~~~~p~l~aL~anSPf~~G~~tg~~s~R~~~~~~~p--~~g~-~~~f~~~~~y~~~~~~~l~~g~---- 216 (372)
T 1r8g_A 144 GDDAIYLLHGLSRFVPHFIALSAASPYMQGTDTRFASSRPNIFSAFP--DNGP-MPWVSNWQQFEALFRCLSYTTM---- 216 (372)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHCCBCEETTEECSCSBCGGGGGTTST--TCSS-CCCCSSHHHHHHHHHHHTTSSS----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCcHHHHHHHHHcCC--ccCC-CcccCCHHHHHHHHHHHHHCCC----
Confidence 99999999999999999999999999999999999999999999996 8886 5579999999999999998732
Q ss_pred ecCceecCCCCcHHHhhhCCCCCCCCCCCChhhhhhccCCCCCcccccc---eeeeecCCCCc-hHHHhHHHHHHHHhhh
Q 011330 308 RKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKR---YLEMRGADGGP-WRRLCALPAFWVGLLY 383 (488)
Q Consensus 308 r~g~~i~~~~~~~~d~~~~~~~~~~g~rPt~~d~~~hlst~fp~VR~k~---~IEiR~~D~~p-~~~~~A~aAl~~GLl~ 383 (488)
+ .|.+++|++||+|. |||||++|++| .++.++++||++||++
T Consensus 217 -----~-----------------------------~~~~~~y~~vRpk~~~~~IE~R~~D~~p~~~~~~a~aa~~~~l~~ 262 (372)
T 1r8g_A 217 -----I-----------------------------DSIKDLHWDIRPSPHFGTVEVRVMDTPLTLSHAVNMAGLIQATAH 262 (372)
T ss_dssp -----C-----------------------------SSGGGCCCSEEEETTTTEEEEEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred -----c-----------------------------CcCCeeccccccCCCCCceEEeccCCCCCHHHHHHHHHHHHHHHH
Confidence 1 47789999999995 99999999999 5999999999999998
Q ss_pred chhhcc-chhhcCCcccHHHHHHHHhhhcccCCCCccC------CccHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHH
Q 011330 384 DEDSLQ-NVLDMTADWTTGERQMLRNKVPKTGLKTPFR------DGLLRHVAQDVLKLSKDGLERRGFKETGFLNEVAEV 456 (488)
Q Consensus 384 ~~~~~~-~~~~~~~~~~~~~~~~lr~~aar~Gl~a~~~------~~~l~~~~~~LL~~a~~gL~~~G~~e~~~L~~l~~~ 456 (488)
+..... ........+...+|+| +|+|+|+++.+. ..++++++.+||+.++++|+++|+. .++++|.++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~n~~---~aar~Gl~~~l~~~~~~~~~~~~~~~~~ll~~~~~~l~~~g~~--~~l~~l~~~ 337 (372)
T 1r8g_A 263 WLLTERPFKHQEKDYLLYKFNRF---QACRYGLEGVITDPHTGDRRPLTEDTLRLLEKIAPSAHKIGAS--SAIEALHRQ 337 (372)
T ss_dssp HHHHHCCCCCCGGGGTTHHHHHH---HHHHHGGGSEEECTTTCCEEEHHHHHHHHHHHSHHHHHHHTCH--HHHHHHHHH
T ss_pred HHHHhCCCCCCCCCHHHHHHHHH---HHHHhCCCCccccCCCCcEeeHHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHH
Confidence 762211 1222333455667766 899999998763 2489999999999999999999964 468999999
Q ss_pred HHcCCCHHHHHHHHHc---CChhhhHHHHHHhh
Q 011330 457 VRTGVTPAEKLLDMYH---GKWRESVDPVFEEL 486 (488)
Q Consensus 457 l~~g~t~A~~~l~~~~---~~~~~~v~~~~~e~ 486 (488)
+++| |+|+||++.|+ +++.+||+.+++++
T Consensus 338 ~~~g-~~a~~q~~~~~~~~~~l~~v~~~~~~~~ 369 (372)
T 1r8g_A 338 VVSG-LNEAQLMRDFVADGGSLIGLVKKHCEIW 369 (372)
T ss_dssp HHHC-CCHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHcC-ChHHHHHHHHHhcCCCHHHHHHHHHHHh
Confidence 9998 99999999995 35999999999886
No 3
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=99.96 E-value=2.2e-29 Score=281.06 Aligned_cols=348 Identities=13% Similarity=0.070 Sum_probs=236.0
Q ss_pred CCCeeEEEeccccccCCCCCCCChhHHHHHHHHHhhccccchhcccccccccccCCceeeec-CCcceeeecCccCCHHH
Q 011330 72 EKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLE-PGGQFELSGAPLETLHQ 150 (488)
Q Consensus 72 ~~~~iGvE~E~~~vd~~t~~~~~~~~i~~lL~~l~~~~g~~~~~e~g~~igl~~~~~~islE-p~~qiEis~~p~~~l~~ 150 (488)
...++|||.|++.||+.||+.++..- .++| |-......|+.| ..+|+|+.|+||.++.+
T Consensus 17 ~~~~~GiE~E~lrvd~~~g~la~~~~-p~~l-------------------g~~~~~~~i~~d~~es~lE~~Tpv~~~~~~ 76 (750)
T 3ln6_A 17 LQATFGLERESLRIHQPTQRVAQTPH-PKTL-------------------GSRNYHPYIQTDYSEPQLELITPIAKDSQE 76 (750)
T ss_dssp TCEEEEEEEEEEEEETTTTEECCCCC-CSSS-------------------CCTTTCSSEEESSBSSEEEEECCCBSSHHH
T ss_pred ccCCceEEEEeeEecCCcCCcCCCcc-hHHh-------------------cCcccCCCccchhhhhheeeeCcCCCCHHH
Confidence 45699999999999997786543210 0111 111122469999 68999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeccCCCCCCCCCCCCC-----CchHHHH-HHHhcccccchhhhhhcccceeEEeeC
Q 011330 151 TCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVM-----PKGRYEI-MRNYMPKVGSLGLDMMFRTCTVQVNLD 224 (488)
Q Consensus 151 ~~~el~~~l~~l~~~a~~~g~~ll~~G~~P~~~~~~~~~~-----pk~RY~~-m~~~~~~~g~~g~~mm~~t~s~QVhld 224 (488)
+.++|....+.+...+. .|..|+++|++|+...+++|+. +|.||+. |.+.| | ++.++ +||+|||++
T Consensus 77 ~~~~L~~l~~~~~~~~~-~~e~lw~~smp~~l~~~~i~ia~~~~~~~~~Yr~~l~~ry---g--~~~q~--i~G~Hvn~~ 148 (750)
T 3ln6_A 77 AIRFLKAISDVAGRSIN-HDEYLWPLSMPPKVREEDIQIAQLEDAFEYDYRKYLEKTY---G--KLIQS--ISGIHYNLG 148 (750)
T ss_dssp HHHHHHHHHHHHHHHSC-TTEEECCSSSCSSCCTTTCCBCCCSCHHHHHHHHHHHHHH---C--TGGGG--CCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhc-CCCceeeecCCCCCCCCCCCcccCCCCCcHHHHHHHHHHh---C--hhhce--eeeEEEEec
Confidence 99999999999988876 7889999999999776778877 6999997 77777 4 44556 999999999
Q ss_pred CCCHHH-------------------HHHHHHHhhhhhHHHHHHhhCCCCC-----CCCCCCC-ccccHHHHhcCCCCCCC
Q 011330 225 FSSEAD-------------------MIRKFRAGLALQPIATALFANSPFT-----EGKPNGY-LSMRSHIWTDTDNNRAG 279 (488)
Q Consensus 225 ~~~e~d-------------------~i~~~n~~~~l~P~l~AL~ANSPf~-----~G~~tg~-~s~R~~iw~~~~~~RtG 279 (488)
+++... .++..|..+.+.|+++|||+||||| .|++|++ .|+|+..|..++ ++|
T Consensus 149 ~~~~~~~~l~~~~~~~~~~~~~~~~y~~l~r~~~r~~w~l~~L~gaSP~~~~~f~~g~~~~~~~S~R~s~~g~~~--~~~ 226 (750)
T 3ln6_A 149 LGQELLTSLFELSQADNAIDFQNQLYMKLSQNFLRYRWLLTYLYGASPVAEEDFLDQKLNNPVRSLRNSHLGYVN--HKD 226 (750)
T ss_dssp ECHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSSSCSSCTTTCCCSBSTTSSSSSCC--CTT
T ss_pred CChHHHHHHhhccccchHHHHhhhHHHHHHHHHHhHHHHHHHHhhCCccccccccCCCCCCceeeeeccccCCCC--CCC
Confidence 997641 2345677778999999999999999 6778884 799999999987 566
Q ss_pred CCCCCCCChhhHHHHHHHHhcccceeEeecCceecCCCCcHHHhhhCCCCCCCCCCCChhhhhhccCCCCCcccccceee
Q 011330 280 MLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLE 359 (488)
Q Consensus 280 ~~P~~F~~~~~fe~y~~~ll~~p~~~v~r~g~~i~~~~~~~~d~~~~~~~~~~g~rPt~~d~~~hlst~fp~VR~k~~IE 359 (488)
+|..|.++.+|.++++.++++ | .+...+..||++ ||+ .+..+.=-.-|--+|||
T Consensus 227 -~~~~~~s~~~Y~~~l~~~v~~--------g-~l~~~~e~y~~i-----------Rpk-----~~~p~~~l~~~Gi~yiE 280 (750)
T 3ln6_A 227 -IRISYTSLKDYVNDLENAVKS--------G-QLIAEKEFYSPV-----------RLR-----GSKACRNYLEKGITYLE 280 (750)
T ss_dssp -CCCCCSSHHHHHHHHHHCCTT--------T-C--CGGGCCCSE-----------EEE-----SCSSTTTTTTTCCCEEE
T ss_pred -CCCCcCCHHHHHHHHHHHHHC--------C-CcccCCceeEee-----------cCC-----CCCCchhHhhCCCCeEE
Confidence 577899987777777776765 3 455555666665 443 11111000001114799
Q ss_pred eecCCCCch-HHHh--HHHHHHHHhhhchhhccchhhcCCccc--HHHHHHHHhhhcccCCCCccCCccHHHHHHHHHHH
Q 011330 360 MRGADGGPW-RRLC--ALPAFWVGLLYDEDSLQNVLDMTADWT--TGERQMLRNKVPKTGLKTPFRDGLLRHVAQDVLKL 434 (488)
Q Consensus 360 iR~~D~~p~-~~~~--A~aAl~~GLl~~~~~~~~~~~~~~~~~--~~~~~~lr~~aar~Gl~a~~~~~~l~~~~~~LL~~ 434 (488)
+|+||.+|. ...+ .-+.|+..++......+.. .....+. ..+|++ +|+++| +....++++++.++++.
T Consensus 281 ~R~~D~~p~~~~GI~~~~~~fl~~fll~~l~~~~~-~~~~~e~~~~~~n~~---~va~~g---p~~~~~~~~~~~~ll~~ 353 (750)
T 3ln6_A 281 FRTFDLNPFSPIGITQETVDTVHLFLLALLWIDSS-SHIDQDIKEANRLND---LIALSH---PLEKLPNQAPVSDLVDA 353 (750)
T ss_dssp ECCCCCCTTSTTSCCHHHHHHHHHHHHHHHHTCC---CHHHHHHHHHHHHH---HHHHSC---TTSCCCTTSCHHHHHHH
T ss_pred EEeecCCCCCcccccHHHHHHHHHHHHHHhCCCCC-CCCHHHHHHHHHHHH---HHHHhC---CCCeecHHHHHHHHHHH
Confidence 999999983 2222 2234444443222111111 1111221 334444 699999 22235788899999999
Q ss_pred HHHHHHhcCCchh--hhHHHHHHHHH-cCCCHHHHHHHHHc-CChhhhHHHH
Q 011330 435 SKDGLERRGFKET--GFLNEVAEVVR-TGVTPAEKLLDMYH-GKWRESVDPV 482 (488)
Q Consensus 435 a~~gL~~~G~~e~--~~L~~l~~~l~-~g~t~A~~~l~~~~-~~~~~~v~~~ 482 (488)
..+-++.+|...+ ..|+.+.+.+. ...|++-+.++.++ +++.+....+
T Consensus 354 l~~~a~~l~~~~~y~~~l~~~~~~~~~p~~t~s~~~~~~~~~~~~~~~~~~~ 405 (750)
T 3ln6_A 354 MQSVIQHFNLSPYYQDLLESVKRQIQSPELTVAGQLLEMIEGLSLETFGQRQ 405 (750)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHSGGGSHHHHHHHHCBTTBCHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHhcCcccCHHHHHHHHHHhcCHHHHHHHH
Confidence 9998898887542 33555555555 44789999888764 4454444333
No 4
>1va6_A Glutamate--cysteine ligase; glutathione homeostasis, beta barrel, peptide synthesis, transition state analogue; HET: P2S ADP P6G; 2.10A {Escherichia coli} SCOP: d.128.1.4 PDB: 1v4g_A* 2d32_A* 2d33_A*
Probab=99.96 E-value=8.7e-29 Score=263.23 Aligned_cols=353 Identities=16% Similarity=0.148 Sum_probs=243.6
Q ss_pred HHHHHcCCCCCCCCeeEEEeccccccCCCCCC--CChhHHHHHHHHHhhccccchhcccccccccccCCceeeec-CCcc
Q 011330 61 VGYLASGCKPKEKWRIGTEHEKFGFEFGTLHP--MKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLE-PGGQ 137 (488)
Q Consensus 61 ~~~~~~g~k~~~~~~iGvE~E~~~vd~~t~~~--~~~~~i~~lL~~l~~~~g~~~~~e~g~~igl~~~~~~islE-p~~q 137 (488)
..++.+.-..=...++|||.|.+.||++ |.. .|.. ..+ |-......|+.| -.+|
T Consensus 9 l~~l~~~~~~l~~~~~GIE~E~lrVd~~-G~La~tphP--~~l--------------------gs~lt~~~IttDfsEsq 65 (518)
T 1va6_A 9 LAWLEKHPQALKGIQRGLERETLRVNAD-GTLATTGHP--EAL--------------------GSALTHKWITTDFAEAL 65 (518)
T ss_dssp HHHHHHSGGGGTTCEEEEEEEEEEECTT-SCBCCSCSC--GGG--------------------CCTTTCSSEEECSBTTE
T ss_pred HHHhhcCHHHHhcCCcceEeeeeEECCC-CCCCCCCCh--HHH--------------------hccccCCCcCCCcchhh
Confidence 5566554333456799999999999987 764 2322 111 111113469999 4799
Q ss_pred eeeecCccCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCCCC-CCCCC---------CCchHHH-HHHHhccccc
Q 011330 138 FELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGL-KDIPV---------MPKGRYE-IMRNYMPKVG 206 (488)
Q Consensus 138 iEis~~p~~~l~~~~~el~~~l~~l~~~a~~~g~~ll~~G~~P~~~~-~~~~~---------~pk~RY~-~m~~~~~~~g 206 (488)
+|+.|+||.++.++.++|....+.+...+ .|..|++.++.|..+. .++|+ ..|.||+ .+.+.+ |
T Consensus 66 lE~iTpv~~s~~eal~~L~~l~~~v~~~l--~~e~Lwp~SmP~~l~~~~~IpiA~yg~s~~g~~k~~Yr~~L~~rY---G 140 (518)
T 1va6_A 66 LEFITPVDGDIEHMLTFMRDLHRYTARNM--GDERMWPLSMPSYIAEGQDIELAQYGTSNTGRFKTLYREGLKNRY---G 140 (518)
T ss_dssp EEEECCCBSCHHHHHHHHHHHHHHHHTSS--TTCEECCSSSCSSCCTTCCCCBCCCCSSHHHHHHHHHHHHHHHHH---C
T ss_pred eeecCCCCCCHHHHHHHHHHHHHHHHHHc--CCCeEeecCCCCCCCCCCCCccccccccccCccchHHHHHHHHHh---C
Confidence 99999999999999999999999999888 4999999888887542 34455 3679999 488877 3
Q ss_pred chhhhhhcccceeEEeeCCCCH-------------------HHHHHHHHHhhhhhHHHHHHhhCCC-----CCCCCCCCC
Q 011330 207 SLGLDMMFRTCTVQVNLDFSSE-------------------ADMIRKFRAGLALQPIATALFANSP-----FTEGKPNGY 262 (488)
Q Consensus 207 ~~g~~mm~~t~s~QVhld~~~e-------------------~d~i~~~n~~~~l~P~l~AL~ANSP-----f~~G~~tg~ 262 (488)
+..++ +||+|||+++++. +..++..|..+.+.|++++||+||| ||.|++||+
T Consensus 141 --~~~q~--IsGiH~N~s~~d~l~~~l~~~~~~~~~~~~~~~~y~~lirn~~r~~wlL~yLfgASP~~~~sF~~g~~t~l 216 (518)
T 1va6_A 141 --ALMQT--ISGVHYNFSLPMAFWQAKSGDISGADAKEKISAGYFRVIRNYYRFGWVIPYLFGASPAISSSFLQGKPTSL 216 (518)
T ss_dssp --HHHHT--CCEEEEEEECCHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHCCBSEECGGGC----CCS
T ss_pred --cchhe--eeeEEEEEecCHHHHHHHHhhccchhHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCccccccccCCCCCCc
Confidence 34455 9999999999987 3677788889999999999999999 889999988
Q ss_pred c---------------cccHHHHhcCCCCCCCCCCCCCCChhhHHHHHHHHhcccc-----eeEeecCceecCCCCcHHH
Q 011330 263 L---------------SMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPM-----YFVYRKKKYIDCAGMSFRD 322 (488)
Q Consensus 263 ~---------------s~R~~iw~~~~~~RtG~~P~~F~~~~~fe~y~~~ll~~p~-----~~v~r~g~~i~~~~~~~~d 322 (488)
. |+|...|..+...+.| +|..|.++.+|.++++.++++|- |-+.++|.|+.-.
T Consensus 217 ~~~~~~~~t~y~p~atSlR~s~~Gy~n~~q~~-l~~~y~sl~~Y~~~l~~~i~tp~~~y~~ig~~~~g~~~Qln------ 289 (518)
T 1va6_A 217 PFEKTESGMYYLPYATSLRLSDLGYTNKSQSN-LGITFNDLYEYVAGLKQAIKTPSEEYAKIGIEKDGKRLQIN------ 289 (518)
T ss_dssp CCEECTTSCEECTTCSBGGGSTTSSCCGGGTT-SCCCSSCHHHHHHHHHHHHTCBCHHHHTTCSEETTEECCSC------
T ss_pred cccccccccccCCCcccccccccCCCCCccCC-CCCCcCCHHHHHHHHHHHHhCccchhhhhccccccchhccc------
Confidence 4 9998888544322566 56689999999999999998752 3344444332110
Q ss_pred hhhCCCCCCCCCCCChhhhhhccCCCCCcccccc------------------eeeeecCCCCch-H--HHhHHHHHHHHh
Q 011330 323 FLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKR------------------YLEMRGADGGPW-R--RLCALPAFWVGL 381 (488)
Q Consensus 323 ~~~~~~~~~~g~rPt~~d~~~hlst~fp~VR~k~------------------~IEiR~~D~~p~-~--~~~A~aAl~~GL 381 (488)
++. ...-+.+|.+||||+ |||+|++|.+|. . .....++|+..+
T Consensus 290 --tg~--------------Lq~e~E~Y~~IRpk~~~~~ge~~~~aL~~~Gi~yIEvR~~DvnPf~~~Gi~~~~~~fl~~f 353 (518)
T 1va6_A 290 --SNV--------------LQIENELYAPIRPKRVTRSGESPSDALLRGGIEYIEVRSLDINPFSPIGVDEQQVRFLDLF 353 (518)
T ss_dssp --SBS--------------CSSGGGCCCSEEEECCCCTTCCHHHHHHHHCCCEEEEEEEECCTTSTTSCCHHHHHHHHHH
T ss_pred --ccc--------------ccccCeeeeccccCCCCCCCcCcHHHHHhCCCCeEEEEeccCCCCccccccHHHHHHHHHH
Confidence 000 022345677777763 699999999993 4 677778898888
Q ss_pred hhchhhccch-hhcCCcccHHHHHHHHhhhcccCCCCccC------C--ccHHHHHHHHHHHHHHHHHhcCCc--hhhhH
Q 011330 382 LYDEDSLQNV-LDMTADWTTGERQMLRNKVPKTGLKTPFR------D--GLLRHVAQDVLKLSKDGLERRGFK--ETGFL 450 (488)
Q Consensus 382 l~~~~~~~~~-~~~~~~~~~~~~~~lr~~aar~Gl~a~~~------~--~~l~~~~~~LL~~a~~gL~~~G~~--e~~~L 450 (488)
+....-.+.. ......+...+|.| +|+++|++..+. . .++++++.+||+...+-++.+|+. ...|.
T Consensus 354 l~~~ll~~~~~~~~~~~~~~~~N~~---~va~~G~~~~l~l~~~~~~~~~~~~~~~~~ll~~l~~~A~~L~~~~~~~~y~ 430 (518)
T 1va6_A 354 MVWCALADAPEMSSSELACTRVNWN---RVILEGRKPGLTLGIGCETAQFPLPQVGKDLFRDLKRVAQTLDSINGGEAYQ 430 (518)
T ss_dssp HHHHHHSCCCCCCHHHHHHTHHHHH---HHHHHTTCTTCEECSTTSCCCEEHHHHHHHHHHHHHHHHHHHHHHHCSSHHH
T ss_pred HHHHHhCCCcCCChHHHHHHHHHHH---HHHHhCCCccccccCCCCcCcccHHHHHHHHHHHHHHHHHHhCCCcCChHHH
Confidence 7554211111 11111223456666 899999986431 2 479999999999999988888752 12344
Q ss_pred HHHHHHH----HcCCCHHHHHHHHH
Q 011330 451 NEVAEVV----RTGVTPAEKLLDMY 471 (488)
Q Consensus 451 ~~l~~~l----~~g~t~A~~~l~~~ 471 (488)
..+.... ....||+.+.++..
T Consensus 431 ~~l~~~~~~~~~P~lT~sarll~~~ 455 (518)
T 1va6_A 431 KVCDELVACFDNPDLTFSARILRSM 455 (518)
T ss_dssp HHHHHHHTTTTCGGGSHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccCHHHHHHHHH
Confidence 4444333 23468888887765
No 5
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=99.93 E-value=2.4e-25 Score=248.12 Aligned_cols=329 Identities=16% Similarity=0.102 Sum_probs=216.5
Q ss_pred CCeeEEEeccccccCCCCCCCChhHHHHHHHHHhhccccchhcccccccccccCCceeeec-CCcceeeecCccCCHHHH
Q 011330 73 KWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLE-PGGQFELSGAPLETLHQT 151 (488)
Q Consensus 73 ~~~iGvE~E~~~vd~~t~~~~~~~~i~~lL~~l~~~~g~~~~~e~g~~igl~~~~~~islE-p~~qiEis~~p~~~l~~~ 151 (488)
..++|||.|.+.||+ +|..+...- .+. + |-......|+.| ..+|+|+.|+||.++.++
T Consensus 18 ~~~~GiE~E~lrVd~-~g~la~~~h-p~~-------l------------g~~~~~~~i~td~ses~lE~iTpv~~~~~~~ 76 (757)
T 3ln7_A 18 QGSFGLEKESQRVTA-DGAIVTTPH-PAV-------F------------GNRRYHPYIQTDFAESQLELITPPTKKLEDT 76 (757)
T ss_dssp CEEEEEEEEEECEET-TSBBCCSCC-CSS-------S------------CCTTTCSSEECSSSTTEEEEEEEEESSHHHH
T ss_pred cCCceEEeEeeEECC-CCCcCCCcC-hHH-------h------------cCcccCCCCCchhhhhheeeeCcCCCCHHHH
Confidence 458999999999998 565433210 001 1 111123468999 589999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCEEEeccCCCCCCC-CCCCCC-----CchHHHH-HHHhcccccchhhhhhcccceeEEeeC
Q 011330 152 CAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGL-KDIPVM-----PKGRYEI-MRNYMPKVGSLGLDMMFRTCTVQVNLD 224 (488)
Q Consensus 152 ~~el~~~l~~l~~~a~~~g~~ll~~G~~P~~~~-~~~~~~-----pk~RY~~-m~~~~~~~g~~g~~mm~~t~s~QVhld 224 (488)
.++|....+.+...+. .|..|+++|++|.... .++|+. +|.||+. |.+.| | ++.++ +||+|||++
T Consensus 77 ~~~L~~l~~~~~~~~~-~~e~lwp~smp~~l~~~~~ip~a~~~~~~~~~Yr~~L~~ry---G--~~~q~--i~GiH~n~s 148 (757)
T 3ln7_A 77 FRWLSVIHEVVQRSLP-EEEYIFPLSMPAGLPAEEQIRVAQLDNPEDVAYREYLVKIY---G--KNKQM--VSGIHYNFQ 148 (757)
T ss_dssp HHHHHHHHHHHHHHSC-TTEECCCSSSCSBCCC---CCCCCCSSHHHHHHHHHHHHHH---C--SHHHH--CCCCEEEEE
T ss_pred HHHHHHHHHHHHHHhc-CCCceeeccCCCcCCCCCCCCccccCCCccHHHHHHHHHHh---c--hhhce--eeeEEEEEe
Confidence 9999998888887764 5678888888775432 344554 5899996 87777 4 44556 999999999
Q ss_pred CCCHH---------------H-----HHHHHHHhhhhhHHHHHHhhCCCCC-----CCC----CCCC-ccccHHHHhcCC
Q 011330 225 FSSEA---------------D-----MIRKFRAGLALQPIATALFANSPFT-----EGK----PNGY-LSMRSHIWTDTD 274 (488)
Q Consensus 225 ~~~e~---------------d-----~i~~~n~~~~l~P~l~AL~ANSPf~-----~G~----~tg~-~s~R~~iw~~~~ 274 (488)
+++.. + .++..|..+.+.|++++||+|||+| .|. ++++ .|+|+..|..++
T Consensus 149 ~~~~~~~~l~~~~~~~~~~~~~~~~~Y~~l~r~~~r~~wll~yL~gaSP~~~~~f~~g~~~~~~~~~~~S~R~s~~gy~~ 228 (757)
T 3ln7_A 149 LSPDLITRLFRLQNEYQSAVDFQNDLYLKMAKNFLRYQWILLYLLAATPTVESAYFKDGSPLAKGQFVRSLRSSQYGYVN 228 (757)
T ss_dssp ECHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCC----CTTTCSSCCSSCCCSBSTTSSSSCCC
T ss_pred cChHHHHHHhhhcccchhHHHHHhHHHHHHHHhhHhHHHHHHHHhhCCcccccccccCCCCCCCCCCcccccccccCCCC
Confidence 99641 1 1234566667999999999999999 452 2334 399999999887
Q ss_pred CCCCCCCCCCCCChhhHHHHHHHHhcccceeEeecCceecCCCCcHHHhhhCCCCCCCCCCCChhhhhhccCCCCCcccc
Q 011330 275 NNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRL 354 (488)
Q Consensus 275 ~~RtG~~P~~F~~~~~fe~y~~~ll~~p~~~v~r~g~~i~~~~~~~~d~~~~~~~~~~g~rPt~~d~~~hlst~fp~VR~ 354 (488)
++| +|..|.++.+|.++++.++++ +.+...+..||++ ||+. + +|.--+
T Consensus 229 --~~~-~~~~~~s~~~Y~~~l~~~v~~---------g~l~~~~e~y~~i-----------Rpk~-----~----~p~~~l 276 (757)
T 3ln7_A 229 --DPE-INVSFDSVEKYVESLEHWVST---------GKLIAEKEFYSNV-----------RLRG-----A----KKAREF 276 (757)
T ss_dssp --CSS-CCCCCSCHHHHHHHHHHHHHC----------CCSSSTTCCCSE-----------EEES-----C----SSGGGH
T ss_pred --CCC-CCCCcCCHHHHHHHHHHHHHc---------CCccccCceeeee-----------cCCC-----C----CChhhH
Confidence 456 577899988888888877875 3565556666665 4431 1 111111
Q ss_pred ----cceeeeecCCCCch-HHHh--HHHHHHHHhhhchhhccchhhcCCccc--HHHHHHHHhhhcccCCCCccCCccHH
Q 011330 355 ----KRYLEMRGADGGPW-RRLC--ALPAFWVGLLYDEDSLQNVLDMTADWT--TGERQMLRNKVPKTGLKTPFRDGLLR 425 (488)
Q Consensus 355 ----k~~IEiR~~D~~p~-~~~~--A~aAl~~GLl~~~~~~~~~~~~~~~~~--~~~~~~lr~~aar~Gl~a~~~~~~l~ 425 (488)
-+|||+|+||.+|. ...+ ..+.|+..++-...-.+... . ..+. ..+|++ +|+++| +....+++
T Consensus 277 ~~~Gi~yiEvR~~D~~P~~~~GI~~~~~~fl~lfll~~l~~~~~~-~-~~e~~~~~~N~~---~va~~g---p~~~~~~~ 348 (757)
T 3ln7_A 277 LTTGIQYLEFRLFDLNPFEIYGISLKDAKFIHVFALFMIWMDHTA-D-QEEVELGKARLA---EVAFEH---PLEKTAYA 348 (757)
T ss_dssp HHHCCCEEEECCCCCCTTSTTSSCHHHHHHHHHHHHHHHHSSCCC-C-HHHHHHHHHHHH---HHHHSC---TTSCCTTH
T ss_pred HhCCCCEEEEEeccCCCCCcccccHHHHHHHHHHHHHHhcCCCCC-C-HHHHHHHHHHHH---HHHHhC---CCCeehHH
Confidence 14799999999883 2222 23345444432222111111 1 2221 233333 799999 22345889
Q ss_pred HHHHHHHHHHHHHHHhcCCchhhhH---HHHHHHH-HcCCCHHHHHHHHH
Q 011330 426 HVAQDVLKLSKDGLERRGFKETGFL---NEVAEVV-RTGVTPAEKLLDMY 471 (488)
Q Consensus 426 ~~~~~LL~~a~~gL~~~G~~e~~~L---~~l~~~l-~~g~t~A~~~l~~~ 471 (488)
+++.++++...+-++.+|.+. .|. +.+.+.+ ....|++-++++..
T Consensus 349 ~~~~~ll~~l~~~a~~l~~~~-~y~~~~~~~~~~~~~p~~T~sa~~~~~~ 397 (757)
T 3ln7_A 349 VEGELVLLELLSMLEQIGAEP-ELFEIVKEKLTQFTDPSKTVAGRLVRAI 397 (757)
T ss_dssp HHHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHCGGGSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHhcChhcCHHHHHHHHH
Confidence 999999999999999998754 244 3333433 34578999888765
No 6
>3nzt_A Glutamate--cysteine ligase; structural genomics, center for structural genomics of infec diseases, csgid, alpha and beta proteins; HET: AMP; 2.00A {Francisella tularensis subsp}
Probab=99.91 E-value=8.8e-24 Score=224.13 Aligned_cols=345 Identities=18% Similarity=0.200 Sum_probs=219.5
Q ss_pred HHHcCC---CCCCCCeeEEEeccccccCCCCCCC--ChhHHHHHHHHHhhccccchhcccccccccccCCceeeec-CCc
Q 011330 63 YLASGC---KPKEKWRIGTEHEKFGFEFGTLHPM--KYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLE-PGG 136 (488)
Q Consensus 63 ~~~~g~---k~~~~~~iGvE~E~~~vd~~t~~~~--~~~~i~~lL~~l~~~~g~~~~~e~g~~igl~~~~~~islE-p~~ 136 (488)
||.+.. +.+.++++|||.|.+.||+ +|..+ |.. . .| |-...-..|+.| -.+
T Consensus 19 ~~~~~~~~~~~~~~~~~GIE~E~lRVd~-~G~La~tphP--~-~L-------------------Gs~lthp~IttDfsEs 75 (525)
T 3nzt_A 19 YFQSNAMYDFKKINNLRGIERETLRVTD-CGNLATSNHP--D-GL-------------------GHKLTNNSITVDFSEN 75 (525)
T ss_dssp -------CCCSSCCCEEEEEEEEEEEET-TSCBCCSCSC--G-GG-------------------CCTTTCSSEEESSBTT
T ss_pred eeeccccccccCCCCCcceEeeeeEECC-CCCcCCCCCh--H-hh-------------------ccCccCCCCCchhhhh
Confidence 566654 5678899999999999998 57633 222 1 11 111112568889 589
Q ss_pred ceeeecCccCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCCCCC-CCCCC---------CchHHH-HHHHhcccc
Q 011330 137 QFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLK-DIPVM---------PKGRYE-IMRNYMPKV 205 (488)
Q Consensus 137 qiEis~~p~~~l~~~~~el~~~l~~l~~~a~~~g~~ll~~G~~P~~~~~-~~~~~---------pk~RY~-~m~~~~~~~ 205 (488)
|+|+.|+|+.++.++.+.|....+.+...+. .+-.|++++ .|....+ ++|+. .|.+|+ -+.+.+
T Consensus 76 qlE~iTp~~~s~~ea~~~L~~l~~~v~~~l~-~~E~LWp~S-mPl~~~~~~ipiA~yg~sn~g~~k~~YR~gL~~rY--- 150 (525)
T 3nzt_A 76 LLELITKPHDSIDKAIGELYQLSAFTLDNMH-SDEIILNTS-MPLSANDNDIQEADFGSSNSGRMKRVYRKGLSARY--- 150 (525)
T ss_dssp EEEEECCCBSSHHHHHHHHHHHHHHHHHHSC-TTEEECCSS-SCCSCCGGGCCBCCCCSSHHHHHHHHHHHHHHHHH---
T ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHHHHhhC-CCCeEEeec-CCCCCCcCCCceeeccccccCcchHHHHHHHHHHh---
Confidence 9999999999999999999988888887764 455788877 5643333 47775 578898 666666
Q ss_pred cchhhhhhcccceeEEeeCCCCH--------------HHHHHHHHHhhhhhHHHHHHhhCCCCC-----CCCCCCCc---
Q 011330 206 GSLGLDMMFRTCTVQVNLDFSSE--------------ADMIRKFRAGLALQPIATALFANSPFT-----EGKPNGYL--- 263 (488)
Q Consensus 206 g~~g~~mm~~t~s~QVhld~~~e--------------~d~i~~~n~~~~l~P~l~AL~ANSPf~-----~G~~tg~~--- 263 (488)
| ...++ +||+|||++++++ +-..+..|-...+.|++++||++||++ .|+++++.
T Consensus 151 G--~~~q~--IsGiH~Nfsl~~~~~~~l~~~~~~~~s~~Y~~Lirnf~Ry~Wll~YLfGASP~~~~sF~~g~~~~l~~~~ 226 (525)
T 3nzt_A 151 G--KIMQI--ISGIHYNFSFDKDLISNIATNKQVSISDIYFDVLNNYFEFMWLLPYLFGASPICAKTSVKNKPDYLSVLD 226 (525)
T ss_dssp C--SGGGG--CCBEEEEEECCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTHHHHHHCCBCEEEGGGCSSCCTTCEECS
T ss_pred c--hhhee--eeeEEEEecCCHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhhCCcccccccccCCCCcccccC
Confidence 3 23334 9999999999964 122245566668999999999999998 89989888
Q ss_pred ----------cccHHH--HhcCCCCCCCCCCCCCCChhhHHHHHHHHhcccc-----eeEe-ecCceecCCCCcHHHhhh
Q 011330 264 ----------SMRSHI--WTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPM-----YFVY-RKKKYIDCAGMSFRDFLA 325 (488)
Q Consensus 264 ----------s~R~~i--w~~~~~~RtG~~P~~F~~~~~fe~y~~~ll~~p~-----~~v~-r~g~~i~~~~~~~~d~~~ 325 (488)
|.|+.. |.+.+ ++| ++..|.++.+|.+.++.++++|- |-++ ++|+++.- =+
T Consensus 227 ~~t~y~p~atSlR~S~~GY~N~~--q~~-l~i~ynsl~~Yv~~l~~av~tp~~~y~~iG~~d~~g~~~QL--------n~ 295 (525)
T 3nzt_A 227 DKFYVGEYATSLRMSDLGYTSPA--QKD-LAISYDNVKAYVKDLIQATDDTFADYKRIGLYNSQGQRIQL--------ND 295 (525)
T ss_dssp SSEEECTTCSBGGGSSCC--CHH--HHT-CCCCCSCHHHHHHHHHHHHHSBCHHHHHHCSBCTTSCBCCS--------CS
T ss_pred CccccCCCcceeeccccCCCCCc--ccC-CCCCCCCHHHHHHHHHHHHhCcchhhhhhcccccccchhhh--------cc
Confidence 899877 33443 456 46689998888888888887642 1111 12222110 00
Q ss_pred CCCCCCCCCCCChhhhhhccCCCCCcccccc------------------eeeeecCCCCch-HHHhHH--HHHHHHhhhc
Q 011330 326 GKLPCLPGELPTLNDWENHLTTIFPEVRLKR------------------YLEMRGADGGPW-RRLCAL--PAFWVGLLYD 384 (488)
Q Consensus 326 ~~~~~~~g~rPt~~d~~~hlst~fp~VR~k~------------------~IEiR~~D~~p~-~~~~A~--aAl~~GLl~~ 384 (488)
+.+ .--.-+|.+||||+ |||+|+||..|. ...+.. ..|+..++..
T Consensus 296 g~L--------------q~enEfYs~IRPK~~~~~ge~P~~aL~~~GI~YIElR~lDlnPf~~~GIs~~~l~FL~lfLl~ 361 (525)
T 3nzt_A 296 GIL--------------QIENEYYSAIRPKQIAKRGERPACALYNRGVEYVEVRVLDVDPFEPVGISKDTALFVEVMLMT 361 (525)
T ss_dssp BSC--------------SSGGGCCCSEEEECCCCTTSCHHHHHHHHCCCEEEECCCBCCTTSTTSCCHHHHHHHHHHHHH
T ss_pred chh--------------hhccceeeccCCCCCCcCCcCchHHHHhcCCCEEEEEeecCCCCcccCcCHHHHHHHHHHHHH
Confidence 000 11234577888875 899999999983 221222 2233333222
Q ss_pred hhhccchhhcCCc--ccHHHHHHHHhhhcccCCCCc--c------CCccHHHHHHHHHHHHHHHHHhcCCchhhhHHHH-
Q 011330 385 EDSLQNVLDMTAD--WTTGERQMLRNKVPKTGLKTP--F------RDGLLRHVAQDVLKLSKDGLERRGFKETGFLNEV- 453 (488)
Q Consensus 385 ~~~~~~~~~~~~~--~~~~~~~~lr~~aar~Gl~a~--~------~~~~l~~~~~~LL~~a~~gL~~~G~~e~~~L~~l- 453 (488)
....+.. ..... ....+|.+ +|+++|.+.. + ...++++++.++++...+-++.+| . .|...|
T Consensus 362 ~ll~~s~-~~~~~e~~~~~~N~~---~Va~~Gr~p~l~L~~~~~g~~~~~~~wa~ell~~l~~~A~~Ld-~--~y~~~l~ 434 (525)
T 3nzt_A 362 CLDKDAK-KYHKDIIKQAKQNLT---AVAIQGRNPQLKLKKLDDDSEILLKDYALELFDEIEAVAKKMP-K--EYLDAVE 434 (525)
T ss_dssp HHHSCCC-CCCHHHHHHHHHHHH---HHHHHTTCTTCEEECTTTCCEEEHHHHHHHHHHHHHHHHTTSC-H--HHHHHHH
T ss_pred HHhCCCC-CCCHHHHHHHHHHHH---HHHHhccCcCCeeecCCCCcEehHHHHHHHHHHHHHHHHHHHC-H--HHHHHHH
Confidence 1111110 11111 12334555 7999998632 1 124799999999999999999988 2 354444
Q ss_pred --HH-HHHcCCCHHHHHHHHH
Q 011330 454 --AE-VVRTGVTPAEKLLDMY 471 (488)
Q Consensus 454 --~~-~l~~g~t~A~~~l~~~ 471 (488)
.+ +.....||+.++++..
T Consensus 435 ~~~~~~~~P~lT~Sarll~~~ 455 (525)
T 3nzt_A 435 IQKRKVLDISQTPSAKIIELA 455 (525)
T ss_dssp HHHHHHHCGGGSHHHHHHHHH
T ss_pred HHHHHhhChhcCHHHHHHHHH
Confidence 33 3334578998887654
No 7
>3ig5_A Glutamate-cysteine ligase; glutathione, ATP-grAsp, ATP-binding, glutathione biosynthesis, nucleotide-binding, phosphoprotein; HET: GLU PGE; 2.10A {Saccharomyces cerevisiae} PDB: 3ig8_A* 3lvv_A* 3lvw_A*
Probab=99.59 E-value=2.2e-14 Score=153.55 Aligned_cols=208 Identities=14% Similarity=0.087 Sum_probs=151.4
Q ss_pred HHHHHHHHHcC-CCCCCCCeeEEEeccccccCCC----CCCCChhHHHHHHHHHhhccccchhcccccccccccCCceee
Q 011330 57 KEDLVGYLASG-CKPKEKWRIGTEHEKFGFEFGT----LHPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSIS 131 (488)
Q Consensus 57 ~~~l~~~~~~g-~k~~~~~~iGvE~E~~~vd~~t----~~~~~~~~i~~lL~~l~~~~g~~~~~e~g~~igl~~~~~~is 131 (488)
+++++..++.. .+.+.....|-|+|+++|+.+. .++...+ .++|+.|++... ..- ......+.
T Consensus 27 I~Qfl~i~~~~k~r~~d~l~WGDEIEy~LV~~d~~~k~arlsl~~--~eIL~~L~~~~~--~~~--------~~~~p~~~ 94 (692)
T 3ig5_A 27 IEQLLYIFQAAGKRDNDPLFWGDELEYMVVDFDDKERNSMLDVCH--DKILTELNMEDS--SLC--------EANDVSFH 94 (692)
T ss_dssp HHHHHHHHHHHTTCCCCCCEEEEEEEEEEEEEETTTTEEEECCSC--TTHHHHTTTTTH--HHH--------HHTTEEEE
T ss_pred HHHHHHHHHHhcccCCCcccccceeEEEEEEecCCCceeeecccH--HHHHHHHhhhhh--hcc--------cCCCCccc
Confidence 45666655444 4677889999999999999653 3466666 888888766310 000 01124556
Q ss_pred ecC-CcceeeecCccC----CHHHHHHHHHHHHHHHHHHHHHc-------------CCEEEeccCCCCCCCCC-------
Q 011330 132 LEP-GGQFELSGAPLE----TLHQTCAEVNSHLYQVKAVAEEM-------------GIGFLGIGFQPKWGLKD------- 186 (488)
Q Consensus 132 lEp-~~qiEis~~p~~----~l~~~~~el~~~l~~l~~~a~~~-------------g~~ll~~G~~P~~~~~~------- 186 (488)
+|. .-+||. |++.+ ..+.++..+...+..++..+++. |..++.+|+-|.....+
T Consensus 95 PEyGryMlE~-TP~~Py~g~~~~~VE~nMr~RR~~a~~~l~~~~~~~~~~~~~~~~~~~~ltit~FPrLG~~dFt~p~~~ 173 (692)
T 3ig5_A 95 PEYGRYMLEA-TPASPYLNYVGSYVEVNMQKRRAIAEYKLSEYARQDSKNNLHVGSRSVPLTLTVFPRMGCPDFINIKDP 173 (692)
T ss_dssp CCSBTTEEEE-EESSCEESCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTTEEEEEECCSSCTTTTSTTCBSSSCT
T ss_pred chhhceeecc-CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCeeEEEeeccccCCCCCCCCCCCC
Confidence 664 357777 55544 23388899999999999999886 78899999888765321
Q ss_pred ---------------CCCCCchHHHHHHHhccc-ccc---------------h---------------------------
Q 011330 187 ---------------IPVMPKGRYEIMRNYMPK-VGS---------------L--------------------------- 208 (488)
Q Consensus 187 ---------------~~~~pk~RY~~m~~~~~~-~g~---------------~--------------------------- 208 (488)
.-+++.+||..+.+-..+ +|. .
T Consensus 174 ~~~~~~~s~Slf~PDe~In~HpRF~tLT~NIR~RRG~KV~InIPif~D~nTp~~d~ti~~~~~f~~~~~~~~~aa~p~~I 253 (692)
T 3ig5_A 174 WNHKNAASRSLFLPDEVINRHVRFPNLTASIRTRRGEKVCMNVPMYKDIATPETDDSIYDRDWFLPEDKEAKLASKPGFI 253 (692)
T ss_dssp TSSCCTTTCCSSCCGGGBCSSTHHHHHHHHHHHHHSSCCCEEEEBCCCTTCCSSCTTCCCCCSSTTGGGTHHHHCCTTEE
T ss_pred CCCCCcccccccCCHhhcCCCcchHHHHHHHHHhcCCCceEeeccccCCCCCCCCcccchhhhCCccccccccccCCCee
Confidence 246889999999875321 121 0
Q ss_pred -hhhhhc--ccceeEEeeCCCCHHHHHHHHHHhhhhhHHHHHHhhCCCCCCCCCCCCccccHHHHhcCCCCCC
Q 011330 209 -GLDMMF--RTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRA 278 (488)
Q Consensus 209 -g~~mm~--~t~s~QVhld~~~e~d~i~~~n~~~~l~P~l~AL~ANSPf~~G~~tg~~s~R~~iw~~~~~~Rt 278 (488)
-..|++ ++|++|||+++++.+++...|+.+..+.|+++||+|||||+.|.. .+..+|..+..++..+|+
T Consensus 254 yMDaMgFGMGccCLQvTfQa~ni~eAR~lYDqL~~l~PimLALSAASP~~kG~l-ad~DtRW~vIs~sVDdRt 325 (692)
T 3ig5_A 254 YMDSMGFGMGCSCLQVTFQAPNINKARYLYDALVNFAPIMLAFSAAAPAFKGWL-ADQDVRWNVISGAVDDRT 325 (692)
T ss_dssp EECSTHHHHTSCBEEEEEEESSHHHHHHHHHHHTTHHHHHHHHTCCCCEETTEE-BSBCCSHHHHHHHTCCCC
T ss_pred EeccccccccccceeeeeccCCHHHHHHHHHhhhhhHHHHHHHhhcChhhccee-cccchhHHHHHhhccCCC
Confidence 001222 177899999999999999999999999999999999999999985 688899999998876776
No 8
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A*
Probab=97.23 E-value=0.00091 Score=68.31 Aligned_cols=114 Identities=19% Similarity=0.165 Sum_probs=69.6
Q ss_pred CCCCCC-HHHHHHHHHcCCCCCCCCeeEEEeccccccCCCC---------CCC---------ChhH--HHHHHHHHhhcc
Q 011330 51 VTEPLT-KEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTL---------HPM---------KYEQ--IAELLNSIAERF 109 (488)
Q Consensus 51 ~~~~~~-~~~l~~~~~~g~k~~~~~~iGvE~E~~~vd~~t~---------~~~---------~~~~--i~~lL~~l~~~~ 109 (488)
...|.+ ++..++++++ ..-...+|+|+|+|+++.+.. .|. +... ..++++++....
T Consensus 103 ~~~pR~iLkr~~~~~~~---~g~~~~~G~E~EF~lf~~~~~~~~~~~~~g~p~~~g~y~~~~~~~~~~~~~~~~~i~~~l 179 (356)
T 2d3a_A 103 PTNKRYSAAKIFSSPEV---AAEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKAC 179 (356)
T ss_dssp TTCCHHHHHHHHHSHHH---HHHCCEEEEEEEEEEEETTTCCBTTSCTTSBCSCSSSCTTCCSTTTCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh---cCCeeEEecceEEEEEecCCCcccccccCCCCCCCCCcCcCcccchHHHHHHHHHHHHHH
Confidence 445666 6677777653 122348999999999985421 110 0000 123333322110
Q ss_pred ccchhcccccccccccCCceeeecC-CcceeeecCccCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCC
Q 011330 110 DWEKVMEGDYIIGLKQGKQSISLEP-GGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKW 182 (488)
Q Consensus 110 g~~~~~e~g~~igl~~~~~~islEp-~~qiEis~~p~~~l~~~~~el~~~l~~l~~~a~~~g~~ll~~G~~P~~ 182 (488)
.-.|+. -..+..|- .||.||+..+. +.-++++.+..+...++++|+++|+... ++|+.
T Consensus 180 ---------~~~Gi~--ve~~h~E~~pgQ~Ei~~~~~-~~l~aAD~~~~~k~~vk~vA~~~G~~aT---FmpKP 238 (356)
T 2d3a_A 180 ---------LYAGIN--ISGINGEVMPGQWEFQVGPS-VGISSGDQVWVARYILERITEIAGVVVT---FDPKP 238 (356)
T ss_dssp ---------HHHTCC--EEEEEECSSTTEEEEEEEEE-ETHHHHHHHHHHHHHHHHHHHHHTEEEE---CCSCS
T ss_pred ---------HHCCCC--EEEeecCcCCCceEEecCCC-CHHHHHHHHHHHHHHHHHHHHHhCCEEE---ECCCc
Confidence 001222 24577783 36999999995 4567889999999999999999997653 45543
No 9
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.0038 Score=64.00 Aligned_cols=104 Identities=19% Similarity=0.160 Sum_probs=67.3
Q ss_pred CCCCCC-HHHHHHHHHcCCCCCCCCeeEEEeccccccCCCC--------CCC---Ch-h-----H--HHHHHHHHhh---
Q 011330 51 VTEPLT-KEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTL--------HPM---KY-E-----Q--IAELLNSIAE--- 107 (488)
Q Consensus 51 ~~~~~~-~~~l~~~~~~g~k~~~~~~iGvE~E~~~vd~~t~--------~~~---~~-~-----~--i~~lL~~l~~--- 107 (488)
...|.+ ++..++.++ |. ...+|+|+||++++.+.. .|. +| . . ..++++++.+
T Consensus 107 ~~~pR~iLkr~~~~~~-g~----~~~~G~E~EF~Lf~~~~~~~~~p~~~~p~~~g~yy~~~~~~~~~~~~i~~~i~~~l~ 181 (370)
T 3fky_A 107 KFNHRHEAAKLFAAHK-DE----EIWFGLEQEYTLFDMYDDVYGWPKGGYPAPQGPYYCGVGAGKVYARDMIEAHYRACL 181 (370)
T ss_dssp TTCCHHHHHHHHHHTG-GG----CCEEEEEEEEEEECTTSSBTTCCTTSBCSCSSSCTTCCSTTTCSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhc-CC----CceEEeeeEEEEEccCCCcccCCCCCccCCCCccccccchhhHHHHHHHHHHHHHHH
Confidence 344555 666666554 43 469999999999986421 111 11 0 0 1334433321
Q ss_pred ccccchhcccccccccccCCceeeecC-CcceeeecCccCCHHHHHHHHHHHHHHHHHHHHHcCCEEE
Q 011330 108 RFDWEKVMEGDYIIGLKQGKQSISLEP-GGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFL 174 (488)
Q Consensus 108 ~~g~~~~~e~g~~igl~~~~~~islEp-~~qiEis~~p~~~l~~~~~el~~~l~~l~~~a~~~g~~ll 174 (488)
..| +. -..+..|- .||.||+..++. .-++++.+.-+...++++|+++|+...
T Consensus 182 ~~G------------i~--ve~~h~E~~pGQ~Ei~~~~~~-~l~aAD~~~~~K~~vk~vA~~~G~~AT 234 (370)
T 3fky_A 182 YAG------------LE--ISGINAEVMPSQWEFQVGPCT-GIDMGDQLWMARYFLHRVAEEFGIKIS 234 (370)
T ss_dssp HHT------------CC--EEEEEECSSTTEEEEEEEEEE-THHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred HcC------------CC--eeeeecCcCCCceEEecCCCC-HHHHHHHHHHHHHHHHHHHHHhCcEEE
Confidence 122 21 24567774 379999999985 567889999999999999999998763
No 10
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A
Probab=97.20 E-value=0.0025 Score=67.37 Aligned_cols=91 Identities=18% Similarity=0.184 Sum_probs=64.6
Q ss_pred ceeeec--CCcceeeecCccCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCCCCCCCCCCCchHHHHHHHhcccc
Q 011330 128 QSISLE--PGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKV 205 (488)
Q Consensus 128 ~~islE--p~~qiEis~~p~~~l~~~~~el~~~l~~l~~~a~~~g~~ll~~G~~P~~~~~~~~~~pk~RY~~m~~~~~~~ 205 (488)
..+..| |+||+||+..+ .+.-.+++.+.-+...++.+|+++|+... ++|+.-..
T Consensus 207 e~~h~E~apggQ~Ei~~~~-~~~l~aAD~~~~~k~~vk~vA~~hGl~at---FmpKP~~g-------------------- 262 (468)
T 1f52_A 207 EAHHHEVATAGQNEVATRF-NTMTKKADEIQIYKYVVHNVAHRFGKTAT---FMPKPMFG-------------------- 262 (468)
T ss_dssp EEEEECSSTTTEEEEEECC-EEHHHHHHHHHHHHHHHHHHHHHTTCEEE---CCSCSSTT--------------------
T ss_pred EEeecCCCCceeEEEeccC-CCHHHHHHHHHHHHHHHHHHHHHhCCEEE---EeCCCCCC--------------------
Confidence 456777 56799999988 57888999999999999999999998764 35543211
Q ss_pred cchhhhhhcccceeEEeeCCCC--------------HHHHHHHHHHhhhhhHHHHHHhh
Q 011330 206 GSLGLDMMFRTCTVQVNLDFSS--------------EADMIRKFRAGLALQPIATALFA 250 (488)
Q Consensus 206 g~~g~~mm~~t~s~QVhld~~~--------------e~d~i~~~n~~~~l~P~l~AL~A 250 (488)
. ..+|+|+|+.+.+ .+.+...+-.++...|.+.|+++
T Consensus 263 ----~----~GSG~H~h~Sl~~~g~Nlf~~~~~~~ls~~~~~~iaGll~h~~~l~a~~a 313 (468)
T 1f52_A 263 ----D----NGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIGGVIKHAKAINALAN 313 (468)
T ss_dssp ----S----CCCCEEEEEEEEETTEETTBCSSGGGBCHHHHHHHHHHHHTHHHHHHHHS
T ss_pred ----C----CCCCcceeeccccCCCcccCCCCcchHHHHHHHHHHHHHHHHHHhHhHhc
Confidence 0 1556666654431 02355555666788999999966
No 11
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A
Probab=97.08 E-value=0.0054 Score=63.23 Aligned_cols=103 Identities=15% Similarity=0.107 Sum_probs=66.2
Q ss_pred CCCCCC-HHHHHHHHHcCCCCCCCCeeEEEeccccccCCCC--------CCC---------C----hh--HHHHHHHHHh
Q 011330 51 VTEPLT-KEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTL--------HPM---------K----YE--QIAELLNSIA 106 (488)
Q Consensus 51 ~~~~~~-~~~l~~~~~~g~k~~~~~~iGvE~E~~~vd~~t~--------~~~---------~----~~--~i~~lL~~l~ 106 (488)
...|.+ ++..++.++ |. ...+|+|+|||+++.+.. .+. + +. .+.++...+.
T Consensus 129 ~~~pR~iLkr~~~~~~-g~----~~~~G~E~EF~Lf~~~~~~~~~~~~g~p~~~g~y~~~~~~~~~~~~~~~~~i~~~l~ 203 (384)
T 2ojw_A 129 ETNLRHTCKRIMDMVS-NQ----HPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHYRACL 203 (384)
T ss_dssp TTCCHHHHHHHHHHTG-GG----CCEEEEEEEEEEEC-CCSBTTCCTTSCCSCSSSCTTCCSTTTCCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHh-CC----EEEEEeeeEEEEEccCCCcccccCCCccCCCCCCCcccccchHHHHHHHHHHHHHHH
Confidence 445666 677777776 43 447999999999986521 010 0 11 1222333222
Q ss_pred hccccchhcccccccccccCCceeeecC-CcceeeecCccCCHHHHHHHHHHHHHHHHHHHHHcCCEEE
Q 011330 107 ERFDWEKVMEGDYIIGLKQGKQSISLEP-GGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFL 174 (488)
Q Consensus 107 ~~~g~~~~~e~g~~igl~~~~~~islEp-~~qiEis~~p~~~l~~~~~el~~~l~~l~~~a~~~g~~ll 174 (488)
. .| +. -..+..|- -||.||+..+..-+ ++++.+.-+...++++|+++|+...
T Consensus 204 ~-~G------------i~--ve~~h~E~~pgQ~Ei~~~~~~~l-~aAD~~~~~k~~vk~vA~~~Gl~aT 256 (384)
T 2ojw_A 204 Y-AG------------VK--IAGTNAEVMPAQWEFQIGPCEGI-SMGDHLWVARFILHRVCEDFGVIAT 256 (384)
T ss_dssp H-HT------------CC--EEEEEECSSTTEEEEEEEEEETT-HHHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred H-CC------------CC--eEeeecCCCCcceEEEcCCCcHH-HHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 2 22 21 24577773 36999999996655 5689999999999999999998763
No 12
>3qaj_A Glutamine synthetase; AMP-PCP, ACP, ligase; HET: GLU ADP RGP CIT AMP; 3.05A {Bacillus subtilis}
Probab=96.87 E-value=0.0093 Score=62.60 Aligned_cols=105 Identities=16% Similarity=0.255 Sum_probs=69.7
Q ss_pred CCCCCC-HHHHHHHHHcCCCCCCC-CeeEEEeccccccCCC-CCC---------------CChh--HHHHHHHHHhhccc
Q 011330 51 VTEPLT-KEDLVGYLASGCKPKEK-WRIGTEHEKFGFEFGT-LHP---------------MKYE--QIAELLNSIAERFD 110 (488)
Q Consensus 51 ~~~~~~-~~~l~~~~~~g~k~~~~-~~iGvE~E~~~vd~~t-~~~---------------~~~~--~i~~lL~~l~~~~g 110 (488)
...|.+ ++..++.+++ ..-. ..+|+|+|||+++.+. +.+ ++.. ...++.+.+.. .|
T Consensus 105 ~~~pR~iLkr~~~~~~~---~G~~~~~~g~E~EF~l~~~~~~g~~~~~~~~~~~y~~~~~~d~~~~~~~~i~~~l~~-~G 180 (444)
T 3qaj_A 105 EGDPRNNLKRILKEMED---LGFSDFNLGPEPEFFLFKLDEKGEPTLELNDKGGYFDLAPTDLGENCRRDIVLELEE-MG 180 (444)
T ss_dssp SSCHHHHHHHHHHHHHT---TTCCEEEEEEEECEEEEEECSSSCEEEEESCCCCTTCCTTTSCCTTHHHHHHHHHHT-TT
T ss_pred CCChHHHHHHHHHHHHH---cCCCeeeEEeceEEEEEecCCCCCCCCcCcCCCCccccCCCcchHHHHHHHHHHHHH-CC
Confidence 445666 6666776654 1223 5799999999998542 211 1111 13455555432 22
Q ss_pred cchhcccccccccccCCceeeecC-CcceeeecCccCCHHHHHHHHHHHHHHHHHHHHHcCCEEE
Q 011330 111 WEKVMEGDYIIGLKQGKQSISLEP-GGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFL 174 (488)
Q Consensus 111 ~~~~~e~g~~igl~~~~~~islEp-~~qiEis~~p~~~l~~~~~el~~~l~~l~~~a~~~g~~ll 174 (488)
+ . -..+..|- .||+||+..+. +.-++++.+.-+...++++|+++|+...
T Consensus 181 i------------~--ve~~h~E~~pGQ~Ei~~~~~-~~l~aAD~~~~~k~~vk~vA~~~G~~aT 230 (444)
T 3qaj_A 181 F------------E--IEASHHEVAPGQHEIDFKYA-GAVRSCDDIQTFKLVVKTIARKHGLHAT 230 (444)
T ss_dssp C------------C--EEEEEECSSTTEEEEEECCE-EHHHHHHHHHHHHHHHHHHHHHTTEEEE
T ss_pred C------------C--eEEeEcCcCCCcEEEecCCC-hHHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 2 1 24567774 48999999996 5778999999999999999999997653
No 13
>4hpp_A Probable glutamine synthetase; glutamine synthase homolog, glutamate, polyamine, ligase; HET: GLU; 2.50A {Pseudomonas aeruginosa}
Probab=96.80 E-value=0.0085 Score=62.84 Aligned_cols=104 Identities=17% Similarity=0.117 Sum_probs=67.9
Q ss_pred CCCCCC-HHHHHHHHH-cCCCCCCCCeeEEEeccccccCCCCCCCC-hh-----H----HHHHHHHHhhccccchhcccc
Q 011330 51 VTEPLT-KEDLVGYLA-SGCKPKEKWRIGTEHEKFGFEFGTLHPMK-YE-----Q----IAELLNSIAERFDWEKVMEGD 118 (488)
Q Consensus 51 ~~~~~~-~~~l~~~~~-~g~k~~~~~~iGvE~E~~~vd~~t~~~~~-~~-----~----i~~lL~~l~~~~g~~~~~e~g 118 (488)
...|.+ ++..++.++ .|.. ..+|+|+|||+++......-. |. . +.++...|.. .|
T Consensus 105 ~~~pR~~L~r~~~~~~~~G~~----~~~g~E~EF~l~~~~p~~~~~~y~~~~~~~~~~~~~~i~~~l~~-~G-------- 171 (443)
T 4hpp_A 105 PACPRSLLRAEVERYRDSGLQ----VIAAFEHEFSLLGLPGERPAAAFSLQAQRAAGQFPGWLVSALAQ-AG-------- 171 (443)
T ss_dssp TTCHHHHHHHHHHHHHHTTEE----EEEEEEEEEEEECCCSSSCCCTTCHHHHHHTTTHHHHHHHHHHH-TT--------
T ss_pred CCChHHHHHHHHHHHHHcCCe----EEEEeeeEEEEeccccCCCCccCCCCcccchHHHHHHHHHHHHH-CC--------
Confidence 344666 666666665 3553 599999999999742211111 11 1 3334433322 22
Q ss_pred cccccccCCceeeecC-CcceeeecCccCCHHHHHHHHHHHHHHHHHHHHHcCCEEE
Q 011330 119 YIIGLKQGKQSISLEP-GGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFL 174 (488)
Q Consensus 119 ~~igl~~~~~~islEp-~~qiEis~~p~~~l~~~~~el~~~l~~l~~~a~~~g~~ll 174 (488)
+. -..+..|- .||.||+..+. +.-++++.+..+...++++|+++|+...
T Consensus 172 ----i~--ve~~h~E~~pgQ~Ei~~~~~-~~l~aAD~~~~~k~~vk~vA~~~G~~aT 221 (443)
T 4hpp_A 172 ----TE--PEMFLPEYGQRQYEVTCRPA-QGVAAADRAVNVREVTREVARQMGLRTC 221 (443)
T ss_dssp ----CC--EEEEEECSSTTEEEEEECCE-ETHHHHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred ----CC--eEEeecCCCCCceEEEecCC-cHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 21 24566774 37999999996 4667889999999999999999998764
No 14
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP}
Probab=96.71 E-value=0.014 Score=61.63 Aligned_cols=46 Identities=24% Similarity=0.167 Sum_probs=39.5
Q ss_pred ceeeecCC--cceeeecCccCCHHHHHHHHHHHHHHHHHHHHHcCCEEE
Q 011330 128 QSISLEPG--GQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFL 174 (488)
Q Consensus 128 ~~islEp~--~qiEis~~p~~~l~~~~~el~~~l~~l~~~a~~~g~~ll 174 (488)
..+..|-+ ||.||+..+. +.-++++.+.-+...++++|+++|+...
T Consensus 210 e~~h~E~~~pGQ~Ei~~~~~-~~l~aAD~~~~~k~~vk~vA~~~G~~aT 257 (473)
T 3ng0_A 210 EKHHHEVASGGQNELGIKFD-KLVNSADNLMIYKYVIKNVAKKYGKTVT 257 (473)
T ss_dssp EEEEECSSTTTEEEEEECCE-EHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred EEeecCcCCCCceEEEccCC-CHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 45778855 8999999995 5778999999999999999999998764
No 15
>4acf_A Glutamine synthetase 1; ligase, nucleotide-binding, TRI-substituted IMID TAUT state, RV2220, GLNA1; HET: 46B P3S; 2.00A {Mycobacterium tuberculosis} PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 2bvc_A* 1hto_A* 1htq_A*
Probab=96.56 E-value=0.018 Score=61.19 Aligned_cols=46 Identities=22% Similarity=0.183 Sum_probs=39.0
Q ss_pred ceeeec--CCcceeeecCccCCHHHHHHHHHHHHHHHHHHHHHcCCEEE
Q 011330 128 QSISLE--PGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFL 174 (488)
Q Consensus 128 ~~islE--p~~qiEis~~p~~~l~~~~~el~~~l~~l~~~a~~~g~~ll 174 (488)
..+..| |.||+||+..+. +.-++++.+.-+...++++|+++|+...
T Consensus 222 e~~h~E~gp~GQ~Ei~~~~~-~~l~aAD~~~~~k~~vk~vA~~~G~~aT 269 (486)
T 4acf_A 222 EKGHHEVGSGGQAEINYQFN-SLLHAADDMQLYKYIIKNTAWQNGKTVT 269 (486)
T ss_dssp EEEEECSSTTTEEEEEECCE-EHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred EeeeeeeeccceeEEeccCc-chhhhhhHHHHHHHHHHHHHHHcCCeEE
Confidence 356677 458999999986 5778899999999999999999998763
No 16
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis}
Probab=95.42 E-value=0.034 Score=61.05 Aligned_cols=50 Identities=20% Similarity=0.154 Sum_probs=40.0
Q ss_pred ceeeecC-CcceeeecCccCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCC
Q 011330 128 QSISLEP-GGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPK 181 (488)
Q Consensus 128 ~~islEp-~~qiEis~~p~~~l~~~~~el~~~l~~l~~~a~~~g~~ll~~G~~P~ 181 (488)
..+..|- .||+||+..+. +.-++++.+.-+...++.+|+++|+... ++|+
T Consensus 281 e~~H~EvaPGQ~EI~~~~~-~al~AAD~~~l~K~vvK~VA~~hGl~AT---FMPK 331 (729)
T 3o6x_A 281 KTRHNEVAPNQFELAPIFE-NCNLANDHNQLVMDLMKRIARKHHFAVL---FHEK 331 (729)
T ss_dssp EEECBCSSTTEECCEECCE-EHHHHHHHHHHHHHHHHHHHHHTTEEEE---CSSC
T ss_pred EEeecCCCCCceEeccCCC-hHHHHHHHHHHHHHHHHHHHHHhCCEEE---Eecc
Confidence 3456673 37999999986 5778999999999999999999997764 3554
No 17
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus}
Probab=90.43 E-value=0.064 Score=55.82 Aligned_cols=115 Identities=10% Similarity=0.024 Sum_probs=70.6
Q ss_pred CCCCCC-HHHHHHHHHc-CCCCCCCCeeEEEeccccccCCC---CCCCChh-----HHHHHHHHHhhccccchhcccccc
Q 011330 51 VTEPLT-KEDLVGYLAS-GCKPKEKWRIGTEHEKFGFEFGT---LHPMKYE-----QIAELLNSIAERFDWEKVMEGDYI 120 (488)
Q Consensus 51 ~~~~~~-~~~l~~~~~~-g~k~~~~~~iGvE~E~~~vd~~t---~~~~~~~-----~i~~lL~~l~~~~g~~~~~e~g~~ 120 (488)
...|.+ ++..++.+++ |..+ ...+|+|+|+|+++.+. +.|..+. ...+++ +.+.+.=.
T Consensus 96 ~~~pR~iLk~~~~~~~~~G~~d--~~~~g~E~EF~l~~~~~~~~~~p~y~~~~~~~~~~~~~---------~~i~~~l~- 163 (421)
T 2j9i_A 96 AASPRYIARAALAQLQAAGAAA--GLLSAFIADFCIFGVPEVINSKTISFPASTTAAAADQP---------QEAAAGGA- 163 (421)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCS--EECCEECCCCEEESCCEEEECSSCEEEECCCTTCTTGG---------GSCCTTCC-
T ss_pred CCChHHHHHHHHHHHHhcCCcc--CceEEeeeEEEEEecCCCCCCCCCcCCCCcccchhHHH---------HHHHHHHh-
Confidence 344566 6666666654 4422 46899999999998652 2221111 001111 11222222
Q ss_pred cccccCCceeeecC-CcceeeecCccCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCC
Q 011330 121 IGLKQGKQSISLEP-GGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKW 182 (488)
Q Consensus 121 igl~~~~~~islEp-~~qiEis~~p~~~l~~~~~el~~~l~~l~~~a~~~g~~ll~~G~~P~~ 182 (488)
.|+.- ..+..|- .||+||+..+..+.-++++.+.-+...++++|+++|+... ++|+.
T Consensus 164 ~Gi~v--e~~h~E~apgQ~Ei~~~~~~~~l~aaD~~~~~k~~vk~vA~~~G~~at---FmpKP 221 (421)
T 2j9i_A 164 AGAAA--GAAGGAAAAGAAEICFLPEAAGAAAADNAFTLRTGLQEVARRYNAIAS---AAAAA 221 (421)
T ss_dssp CSCCC--BTTBCCCCCSSCCTTTTTTTCCSCTTTHHHHHHHHHHHHHHTTTCEEE---CCTTS
T ss_pred CCCCe--EEeecCCCCCcEEEecCCCChHHHHHHHHHHHHHHHHHHHHHhCCEEE---EcCCc
Confidence 33322 3456673 3799999998773567889999999999999999998764 35543
No 18
>2bp3_S Platelet glycoprotein IB alpha chain; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens}
Probab=39.20 E-value=7.5 Score=23.31 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=12.3
Q ss_pred ccCCCCCccccccee
Q 011330 344 HLTTIFPEVRLKRYL 358 (488)
Q Consensus 344 hlst~fp~VR~k~~I 358 (488)
..|.+|-|||+.|++
T Consensus 8 frsslflwvr~ng~~ 22 (26)
T 2bp3_S 8 FRSSLFLWVRPNGRV 22 (26)
T ss_pred hhheEEEEEccCCee
Confidence 567889999998874
No 19
>1j3g_A AMPD protein, AMPD; mixed alpha-beta, hydrolase; NMR {Citrobacter freundii} SCOP: d.118.1.1 PDB: 2y28_A 2y2b_A* 2y2c_A 2y2d_A 2y2e_A
Probab=23.34 E-value=32 Score=31.07 Aligned_cols=42 Identities=21% Similarity=0.293 Sum_probs=26.1
Q ss_pred CCCCCeeEEEeccccccCCCCCCCChhHHHHHHHHHhhccccch
Q 011330 70 PKEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEK 113 (488)
Q Consensus 70 ~~~~~~iGvE~E~~~vd~~t~~~~~~~~i~~lL~~l~~~~g~~~ 113 (488)
.-+...||||+|-. +.+..+...++.+.+|+..|..+++..+
T Consensus 107 ~~N~~SIGIe~~g~--~~~~~t~aQ~~al~~L~~~l~~~y~i~~ 148 (187)
T 1j3g_A 107 RCNDFSIGIELEGT--DTLAYTDAQYQQLAAVTNALITRYPAIA 148 (187)
T ss_dssp ESSCCSCCCEEECS--TTCCCCTHHHHHHHHHHHHHHHHSTTGG
T ss_pred CCCCCEEEEEEEcC--CCCCCCHHHHHHHHHHHHHHHHHcCCCh
Confidence 34567999999943 1111222233346778888888887654
Done!