Query 011332
Match_columns 488
No_of_seqs 318 out of 2065
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 00:10:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011332.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011332hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 3.6E-68 7.7E-73 561.4 10.4 211 260-470 31-370 (524)
2 PLN02814 beta-glucosidase 100.0 4.6E-58 9.9E-63 489.0 11.9 189 261-450 23-334 (504)
3 PLN02998 beta-glucosidase 100.0 7.7E-58 1.7E-62 486.5 12.0 190 261-450 26-340 (497)
4 PLN02849 beta-glucosidase 100.0 1.6E-57 3.5E-62 484.6 11.4 190 260-450 24-336 (503)
5 PRK09593 arb 6-phospho-beta-gl 100.0 7.2E-57 1.6E-61 477.1 12.1 188 263-450 3-321 (478)
6 PRK09589 celA 6-phospho-beta-g 100.0 1.2E-55 2.6E-60 467.5 12.2 186 265-450 3-320 (476)
7 PF00232 Glyco_hydro_1: Glycos 100.0 2E-56 4.4E-61 469.5 5.9 188 264-452 3-306 (455)
8 PRK13511 6-phospho-beta-galact 100.0 1.9E-55 4.1E-60 465.0 12.4 184 264-450 3-306 (469)
9 TIGR01233 lacG 6-phospho-beta- 100.0 4.4E-55 9.4E-60 462.3 12.0 184 265-450 3-305 (467)
10 PRK15014 6-phospho-beta-glucos 100.0 9.5E-55 2.1E-59 460.9 13.6 189 262-450 2-322 (477)
11 PRK09852 cryptic 6-phospho-bet 100.0 1.5E-53 3.2E-58 451.6 12.6 187 264-450 2-318 (474)
12 COG2723 BglB Beta-glucosidase/ 100.0 4.8E-53 1E-57 443.0 4.1 204 264-473 2-212 (460)
13 TIGR03356 BGL beta-galactosida 100.0 3.5E-51 7.5E-56 428.1 11.4 183 266-450 1-295 (427)
14 KOG0626 Beta-glucosidase, lact 99.8 2.9E-19 6.4E-24 190.5 7.6 132 89-250 380-512 (524)
15 PF00232 Glyco_hydro_1: Glycos 99.8 2E-19 4.2E-24 190.0 4.8 78 167-249 378-455 (455)
16 PLN02849 beta-glucosidase 99.8 5.1E-19 1.1E-23 189.8 6.0 79 166-248 406-484 (503)
17 PLN02998 beta-glucosidase 99.8 7.2E-19 1.6E-23 188.4 6.5 77 167-247 412-488 (497)
18 PLN02814 beta-glucosidase 99.7 8.6E-19 1.9E-23 188.1 6.7 81 167-251 407-487 (504)
19 TIGR01233 lacG 6-phospho-beta- 99.7 8.2E-19 1.8E-23 186.6 6.0 78 167-250 390-467 (467)
20 PRK09852 cryptic 6-phospho-bet 99.7 1.9E-18 4.1E-23 184.3 6.1 80 167-250 389-472 (474)
21 PRK13511 6-phospho-beta-galact 99.7 2.3E-18 4.9E-23 183.2 5.8 77 167-249 392-468 (469)
22 PRK09589 celA 6-phospho-beta-g 99.7 3E-18 6.4E-23 182.8 5.9 78 167-248 391-473 (476)
23 PRK15014 6-phospho-beta-glucos 99.7 4E-18 8.6E-23 181.9 5.5 79 167-249 392-475 (477)
24 PRK09593 arb 6-phospho-beta-gl 99.7 4.9E-18 1.1E-22 181.2 5.7 80 167-250 392-476 (478)
25 COG2723 BglB Beta-glucosidase/ 99.6 4.5E-17 9.8E-22 172.3 3.4 77 167-248 378-454 (460)
26 TIGR03356 BGL beta-galactosida 99.6 3E-16 6.6E-21 165.2 3.1 68 167-240 360-427 (427)
27 PF02449 Glyco_hydro_42: Beta- 98.5 1.1E-07 2.3E-12 98.3 4.1 74 316-393 10-84 (374)
28 PF00150 Cellulase: Cellulase 97.8 5E-05 1.1E-09 73.2 6.4 67 317-385 22-89 (281)
29 PF07021 MetW: Methionine bios 97.6 5.8E-05 1.3E-09 73.1 4.6 136 92-251 14-162 (193)
30 COG1874 LacA Beta-galactosidas 97.2 0.00041 8.9E-09 78.0 4.9 74 316-393 30-106 (673)
31 smart00633 Glyco_10 Glycosyl h 94.3 0.036 7.9E-07 54.8 3.5 82 337-430 1-84 (254)
32 PLN02161 beta-amylase 92.1 0.29 6.4E-06 53.9 6.3 73 312-387 113-197 (531)
33 PLN02803 beta-amylase 91.9 0.32 6.8E-06 53.9 6.3 69 316-387 107-187 (548)
34 PLN02801 beta-amylase 91.5 0.39 8.5E-06 52.9 6.4 69 316-387 37-117 (517)
35 PLN00197 beta-amylase; Provisi 91.2 0.45 9.8E-06 52.9 6.5 68 317-387 128-207 (573)
36 PF08241 Methyltransf_11: Meth 91.2 0.4 8.7E-06 38.1 4.7 88 96-188 1-90 (95)
37 PLN02905 beta-amylase 91.0 0.46 1E-05 53.6 6.4 73 312-387 282-366 (702)
38 PLN02705 beta-amylase 90.5 0.6 1.3E-05 52.6 6.8 71 314-387 266-348 (681)
39 PF01373 Glyco_hydro_14: Glyco 90.2 0.25 5.5E-06 53.0 3.5 70 315-387 15-96 (402)
40 COG2730 BglC Endoglucanase [Ca 87.7 1.2 2.7E-05 47.3 6.6 74 311-384 63-144 (407)
41 PF01301 Glyco_hydro_35: Glyco 87.5 0.59 1.3E-05 48.4 3.9 75 316-391 24-106 (319)
42 TIGR03587 Pse_Me-ase pseudamin 87.1 1 2.3E-05 43.4 5.1 99 93-196 45-144 (204)
43 TIGR02081 metW methionine bios 83.0 3 6.5E-05 39.2 6.1 100 93-199 15-116 (194)
44 PTZ00098 phosphoethanolamine N 81.1 3.8 8.3E-05 40.9 6.3 119 70-192 31-153 (263)
45 PF13489 Methyltransf_23: Meth 78.7 2.4 5.2E-05 37.2 3.6 89 90-192 21-113 (161)
46 TIGR00740 methyltransferase, p 71.7 23 0.0005 34.3 8.7 114 74-192 36-158 (239)
47 PF08242 Methyltransf_12: Meth 71.5 4 8.6E-05 33.7 2.9 91 96-188 1-96 (99)
48 PRK11207 tellurite resistance 66.1 21 0.00047 33.9 7.1 108 72-190 17-129 (197)
49 TIGR02469 CbiT precorrin-6Y C5 64.2 22 0.00048 29.7 6.1 100 92-195 20-123 (124)
50 PF14488 DUF4434: Domain of un 63.4 14 0.0003 35.0 5.1 62 316-379 20-88 (166)
51 PRK10258 biotin biosynthesis p 61.3 19 0.00042 35.0 5.9 123 64-192 13-138 (251)
52 PRK15451 tRNA cmo(5)U34 methyl 60.7 27 0.00059 34.3 6.9 118 70-192 35-161 (247)
53 TIGR02021 BchM-ChlM magnesium 60.4 19 0.0004 34.4 5.6 92 93-192 57-155 (219)
54 PRK07580 Mg-protoporphyrin IX 59.7 29 0.00063 32.8 6.7 102 79-189 51-160 (230)
55 PRK05785 hypothetical protein; 58.5 38 0.00082 33.1 7.4 90 92-189 52-141 (226)
56 PLN03059 beta-galactosidase; P 58.1 14 0.0003 43.5 4.9 72 316-388 59-138 (840)
57 PF02836 Glyco_hydro_2_C: Glyc 57.0 5.9 0.00013 39.9 1.6 24 314-337 34-57 (298)
58 PF13204 DUF4038: Protein of u 55.1 25 0.00055 35.9 5.8 61 318-378 32-110 (289)
59 PF01229 Glyco_hydro_39: Glyco 54.5 12 0.00026 40.8 3.6 59 317-378 40-106 (486)
60 PF07745 Glyco_hydro_53: Glyco 53.3 34 0.00074 36.2 6.5 69 320-395 28-99 (332)
61 PLN02233 ubiquinone biosynthes 51.4 41 0.00089 33.6 6.5 126 64-192 22-179 (261)
62 cd02440 AdoMet_MTases S-adenos 51.3 33 0.00071 26.3 4.7 94 94-192 1-102 (107)
63 PLN02336 phosphoethanolamine N 50.4 22 0.00048 38.1 4.7 97 93-192 39-139 (475)
64 PRK11036 putative S-adenosyl-L 48.9 40 0.00087 33.1 5.9 98 89-192 42-146 (255)
65 TIGR02072 BioC biotin biosynth 47.9 56 0.0012 30.6 6.5 95 93-192 36-133 (240)
66 PLN02244 tocopherol O-methyltr 47.9 40 0.00087 35.0 6.0 97 91-192 118-220 (340)
67 PF12847 Methyltransf_18: Meth 46.7 28 0.0006 28.9 3.8 97 93-190 3-106 (112)
68 PRK08317 hypothetical protein; 44.7 39 0.00083 31.5 4.9 97 93-192 21-121 (241)
69 TIGR02752 MenG_heptapren 2-hep 43.7 35 0.00076 32.5 4.5 96 93-191 47-147 (231)
70 COG0312 TldD Predicted Zn-depe 43.6 13 0.00028 40.0 1.7 121 81-222 260-395 (454)
71 PRK12335 tellurite resistance 43.4 35 0.00076 34.4 4.7 105 73-188 108-216 (287)
72 KOG0496 Beta-galactosidase [Ca 43.4 54 0.0012 37.7 6.5 72 316-388 49-128 (649)
73 PRK10150 beta-D-glucuronidase; 42.8 15 0.00033 41.0 2.1 21 316-336 313-333 (604)
74 TIGR00477 tehB tellurite resis 40.9 49 0.0011 31.4 5.0 105 74-189 19-127 (195)
75 smart00642 Aamy Alpha-amylase 40.2 53 0.0011 30.9 5.0 67 315-381 18-97 (166)
76 PF14871 GHL6: Hypothetical gl 39.7 55 0.0012 30.0 4.9 66 321-387 5-82 (132)
77 TIGR00452 methyltransferase, p 39.6 43 0.00094 34.9 4.7 96 93-192 123-222 (314)
78 PF10717 ODV-E18: Occlusion-de 39.6 25 0.00055 30.5 2.5 32 29-60 23-54 (85)
79 TIGR00433 bioB biotin syntheta 39.3 75 0.0016 31.7 6.2 53 319-374 123-176 (296)
80 COG3250 LacZ Beta-galactosidas 38.7 18 0.00039 42.5 2.0 26 311-336 316-341 (808)
81 PF13649 Methyltransf_25: Meth 36.3 38 0.00082 28.1 3.1 90 95-187 1-99 (101)
82 PRK10340 ebgA cryptic beta-D-g 32.7 24 0.00052 42.4 1.8 24 314-337 353-376 (1021)
83 PRK09525 lacZ beta-D-galactosi 31.9 25 0.00055 42.2 1.8 24 314-337 369-392 (1027)
84 COG2764 PhnB Uncharacterized p 31.7 1.6E+02 0.0035 27.4 6.6 116 77-227 12-131 (136)
85 PF02638 DUF187: Glycosyl hydr 31.7 89 0.0019 32.4 5.5 77 316-394 19-119 (311)
86 PRK01683 trans-aconitate 2-met 30.2 1.4E+02 0.003 29.1 6.3 93 90-188 30-123 (258)
87 PF00128 Alpha-amylase: Alpha 30.1 94 0.002 29.9 5.1 57 319-377 7-73 (316)
88 PRK10148 hypothetical protein; 29.3 1.9E+02 0.004 26.7 6.6 121 76-222 12-137 (147)
89 PLN02361 alpha-amylase 28.6 88 0.0019 33.9 5.0 64 313-376 26-96 (401)
90 TIGR00417 speE spermidine synt 28.4 1.4E+02 0.003 30.0 6.0 54 68-129 52-105 (270)
91 PRK06202 hypothetical protein; 28.3 1E+02 0.0023 29.6 5.1 99 90-192 59-164 (232)
92 PRK15068 tRNA mo(5)U34 methylt 28.1 92 0.002 32.3 4.9 96 93-192 124-223 (322)
93 TIGR03581 EF_0839 conserved hy 27.6 97 0.0021 31.5 4.7 51 315-373 134-206 (236)
94 smart00828 PKS_MT Methyltransf 26.3 86 0.0019 29.7 4.0 94 93-192 1-102 (224)
95 PF06040 Adeno_E3: Adenovirus 25.8 55 0.0012 30.1 2.4 45 8-52 58-108 (127)
96 cd07948 DRE_TIM_HCS Saccharomy 25.4 1.2E+02 0.0026 30.7 5.1 60 319-378 74-134 (262)
97 PRK04161 tagatose 1,6-diphosph 25.2 1.5E+02 0.0032 31.7 5.7 60 321-383 112-171 (329)
98 TIGR01934 MenG_MenH_UbiE ubiqu 25.0 1.2E+02 0.0026 28.2 4.6 93 93-190 41-138 (223)
99 PF11899 DUF3419: Protein of u 25.0 89 0.0019 33.6 4.2 39 154-192 293-331 (380)
100 PF13847 Methyltransf_31: Meth 24.7 1.1E+02 0.0023 27.4 4.1 97 90-192 2-107 (152)
101 COG2226 UbiE Methylase involve 24.2 1.1E+02 0.0024 31.0 4.5 97 92-192 52-153 (238)
102 PF03848 TehB: Tellurite resis 24.0 75 0.0016 31.1 3.2 100 75-187 20-125 (192)
103 TIGR00539 hemN_rel putative ox 23.7 99 0.0021 32.3 4.2 62 318-382 99-162 (360)
104 smart00138 MeTrc Methyltransfe 23.7 4E+02 0.0087 26.7 8.4 114 79-194 86-241 (264)
105 PLN00196 alpha-amylase; Provis 23.3 1E+02 0.0022 33.5 4.4 63 314-376 42-112 (428)
106 PF04639 Baculo_E56: Baculovir 23.0 65 0.0014 33.8 2.6 34 12-46 257-290 (305)
107 PF03198 Glyco_hydro_72: Gluca 22.2 53 0.0011 34.7 1.8 50 316-379 53-102 (314)
108 PRK12399 tagatose 1,6-diphosph 22.1 1.7E+02 0.0038 31.1 5.6 59 322-383 111-169 (324)
109 cd07939 DRE_TIM_NifV Streptomy 22.0 1.3E+02 0.0029 29.9 4.6 59 319-377 72-131 (259)
110 COG0635 HemN Coproporphyrinoge 21.9 2.4E+02 0.0053 30.5 6.8 84 314-398 202-294 (416)
111 PF13812 PPR_3: Pentatricopept 21.6 66 0.0014 21.0 1.6 14 359-372 21-34 (34)
112 PLN02389 biotin synthase 21.5 2.4E+02 0.0053 30.2 6.7 57 317-376 176-233 (379)
113 PRK07094 biotin synthase; Prov 21.0 1.7E+02 0.0038 29.7 5.3 53 318-373 128-182 (323)
114 PRK00121 trmB tRNA (guanine-N( 21.0 99 0.0022 29.5 3.3 85 79-163 28-118 (202)
115 PRK11088 rrmA 23S rRNA methylt 20.9 2.3E+02 0.0049 28.2 6.0 92 83-188 77-174 (272)
116 PF00331 Glyco_hydro_10: Glyco 20.7 50 0.0011 34.2 1.3 88 336-431 43-136 (320)
117 PF10566 Glyco_hydro_97: Glyco 20.3 2.2E+02 0.0047 29.5 5.8 89 291-380 8-97 (273)
118 PLN02396 hexaprenyldihydroxybe 20.3 1.7E+02 0.0037 30.7 5.1 93 94-192 134-232 (322)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.6e-68 Score=561.39 Aligned_cols=211 Identities=58% Similarity=1.061 Sum_probs=194.4
Q ss_pred ccccCCCCCCCeehhhhhhhhhcCccCCCCCCCceeeecccCCc--c--cCCCCccccccccChHHHHHHHHcCCCeEee
Q 011332 260 EYTKNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGN--V--LGNGDIACDEYHKYKEDVKLMAKTGLDAYRF 335 (488)
Q Consensus 260 s~~~~~FP~~FlwG~AtSA~QvEG~~~~~gkg~SiWD~f~~~~~--~--~~~gd~a~D~Y~rykeDI~LmkelGvnayRF 335 (488)
++.+..||++|+||+||||||+|||++++||++|+||+|+|..+ + .++||+|||+||+|+|||+||++||+++|||
T Consensus 31 ~~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRF 110 (524)
T KOG0626|consen 31 KFSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRF 110 (524)
T ss_pred cccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEEE
Confidence 67789999999999999999999999999999999999998632 2 2478999999999999999999999999999
Q ss_pred eccccccccCCC--CCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCcccccccCCCccceee---------------
Q 011332 336 SISWSRLIPNGR--GPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV--------------- 398 (488)
Q Consensus 336 SIsWsRI~P~G~--G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~DlPqwL~dkyGGWln~~iv--------------- 398 (488)
|||||||+|.|+ +.||++|++||+++|++|+++||+|+|||||||+||+|+|+||||+|++||
T Consensus 111 SIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fG 190 (524)
T KOG0626|consen 111 SISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFG 190 (524)
T ss_pred EeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhc
Confidence 999999999997 689999999999999999999999999999999999999999999999985
Q ss_pred --------------------------------------------------------------------------------
Q 011332 399 -------------------------------------------------------------------------------- 398 (488)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (488)
T Consensus 191 DrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~ 270 (524)
T KOG0626|consen 191 DRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIAL 270 (524)
T ss_pred ccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEE
Confidence
Q ss_pred ----------------------------eeCCccccChhHHHHHhhCCCCCccchhhhhhcccccceeeeecceeeEeec
Q 011332 399 ----------------------------VANPLVYGDYPKIMKQNAGSRLPAFTDHESQQIKGSADFIGVINYYTVYIKD 450 (488)
Q Consensus 399 ----------------------------~~~Pi~fgdYp~~m~~~~GdRLP~FT~~E~~~lkGS~DF~gln~y~t~y~~~ 450 (488)
+++|+.+||||++|++.+|+|||.||++|+++||||+||+|||||+|+|+++
T Consensus 271 ~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~ 350 (524)
T KOG0626|consen 271 SARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKH 350 (524)
T ss_pred eeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhc
Confidence 1688899999999999999999999999999999999999999999999998
Q ss_pred CCCccccCCCccccccccee
Q 011332 451 NPSSLKQKHRDWSADTATKF 470 (488)
Q Consensus 451 ~~~~~~~~~~~~~~d~~~~~ 470 (488)
.+...++....+.+|..+..
T Consensus 351 ~~~~~~~~~~~~~~d~~~~~ 370 (524)
T KOG0626|consen 351 LKPPPDPSQPGWSTDSGVDW 370 (524)
T ss_pred cCCCCCCCCcccccccceee
Confidence 76545555556777777666
No 2
>PLN02814 beta-glucosidase
Probab=100.00 E-value=4.6e-58 Score=488.96 Aligned_cols=189 Identities=68% Similarity=1.200 Sum_probs=174.1
Q ss_pred cccCCCCCCCeehhhhhhhhhcCccCCCCCCCceeeecccCCcccCCCCccccccccChHHHHHHHHcCCCeEeeecccc
Q 011332 261 YTKNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGNVLGNGDIACDEYHKYKEDVKLMAKTGLDAYRFSISWS 340 (488)
Q Consensus 261 ~~~~~FP~~FlwG~AtSA~QvEG~~~~~gkg~SiWD~f~~~~~~~~~gd~a~D~Y~rykeDI~LmkelGvnayRFSIsWs 340 (488)
+.+.+||++|+||+||||||+||+++++|||+|+||.|++... ..++++||||||||+|||+|||+||+|+|||||+||
T Consensus 23 ~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~~~-~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSIsWs 101 (504)
T PLN02814 23 FTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHCYN-GGNGDIASDGYHKYKEDVKLMAEMGLESFRFSISWS 101 (504)
T ss_pred cccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeeccC-CCCCCccccHHHhhHHHHHHHHHcCCCEEEEeccHh
Confidence 4456799999999999999999999999999999999987421 137899999999999999999999999999999999
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCcccccccCCCccceee----------------------
Q 011332 341 RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV---------------------- 398 (488)
Q Consensus 341 RI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~DlPqwL~dkyGGWln~~iv---------------------- 398 (488)
||+|+|+|.+|++|++||+++||+|+++||+|||||||||+|+||+++||||+|++++
T Consensus 102 RI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~Wi 181 (504)
T PLN02814 102 RLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVKLWT 181 (504)
T ss_pred hcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCCEEE
Confidence 9999998999999999999999999999999999999999999999999999998764
Q ss_pred --------------------------------------------------------------------------------
Q 011332 399 -------------------------------------------------------------------------------- 398 (488)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (488)
T Consensus 182 T~NEP~~~~~~gy~~G~~pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~~~~P 261 (504)
T PLN02814 182 TINEATIFAIGSYGQGIRYGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAFGLSP 261 (504)
T ss_pred eccccchhhhcccccCcCCCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCceeec
Confidence
Q ss_pred ---------------------eeCCccccChhHHHHHhhCCCCCccchhhhhhcccccceeeeecceeeEeec
Q 011332 399 ---------------------VANPLVYGDYPKIMKQNAGSRLPAFTDHESQQIKGSADFIGVINYYTVYIKD 450 (488)
Q Consensus 399 ---------------------~~~Pi~fgdYp~~m~~~~GdRLP~FT~~E~~~lkGS~DF~gln~y~t~y~~~ 450 (488)
+++|++.|+||+.|++.+++++|.||++|.+.|+|++||+|+|||++.++++
T Consensus 262 ~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~ 334 (504)
T PLN02814 262 YTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTN 334 (504)
T ss_pred CCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceecc
Confidence 0244567999999999999999999999999999999999999999989874
No 3
>PLN02998 beta-glucosidase
Probab=100.00 E-value=7.7e-58 Score=486.51 Aligned_cols=190 Identities=76% Similarity=1.359 Sum_probs=174.7
Q ss_pred cccCCCCCCCeehhhhhhhhhcCccCCCCCCCceeeecccCCccc-CCCCccccccccChHHHHHHHHcCCCeEeeeccc
Q 011332 261 YTKNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGNVL-GNGDIACDEYHKYKEDVKLMAKTGLDAYRFSISW 339 (488)
Q Consensus 261 ~~~~~FP~~FlwG~AtSA~QvEG~~~~~gkg~SiWD~f~~~~~~~-~~gd~a~D~Y~rykeDI~LmkelGvnayRFSIsW 339 (488)
+.+.+||++|+||+|||||||||+++++|||+|+||.|++.+... .++++||||||||+|||+||++||+|+|||||+|
T Consensus 26 ~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~a~D~Yhry~EDi~lmk~lG~~~YRfSIsW 105 (497)
T PLN02998 26 YSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAHAGHSGVAAGNVACDQYHKYKEDVKLMADMGLEAYRFSISW 105 (497)
T ss_pred CccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccccCcCCCCCCcccccHHHhhHHHHHHHHHcCCCeEEeeccH
Confidence 456789999999999999999999999999999999998854211 3789999999999999999999999999999999
Q ss_pred cccccCCCCCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCcccccccCCCccceee---------------------
Q 011332 340 SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV--------------------- 398 (488)
Q Consensus 340 sRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~DlPqwL~dkyGGWln~~iv--------------------- 398 (488)
|||+|+|+|.+|++|++||+++||+|+++||||+|||||||+|+||+++||||+|++++
T Consensus 106 sRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk~W 185 (497)
T PLN02998 106 SRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRDFTAYADTCFKEFGDRVSHW 185 (497)
T ss_pred HhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHHHHHHHHHHHHHhcCcCCEE
Confidence 99999998899999999999999999999999999999999999999999999998864
Q ss_pred --------------------------------------------------------------------------------
Q 011332 399 -------------------------------------------------------------------------------- 398 (488)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (488)
T Consensus 186 iT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~~~~~~ 265 (497)
T PLN02998 186 TTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGISVYTYGA 265 (497)
T ss_pred EEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeCCee
Confidence
Q ss_pred -----------------------eeCCccccChhHHHHHhhCCCCCccchhhhhhcccccceeeeecceeeEeec
Q 011332 399 -----------------------VANPLVYGDYPKIMKQNAGSRLPAFTDHESQQIKGSADFIGVINYYTVYIKD 450 (488)
Q Consensus 399 -----------------------~~~Pi~fgdYp~~m~~~~GdRLP~FT~~E~~~lkGS~DF~gln~y~t~y~~~ 450 (488)
+++|++.|+||+.|++.+++++|.||++|.+.|+|++||+|+|||++.++++
T Consensus 266 ~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~ 340 (497)
T PLN02998 266 VPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGVINYMALYVKD 340 (497)
T ss_pred ecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEchhcCccccc
Confidence 0134457999999999999999999999999999999999999999999875
No 4
>PLN02849 beta-glucosidase
Probab=100.00 E-value=1.6e-57 Score=484.62 Aligned_cols=190 Identities=67% Similarity=1.237 Sum_probs=175.1
Q ss_pred ccccCCCCCCCeehhhhhhhhhcCccCCCCCCCceeeecccCCcccCCCCccccccccChHHHHHHHHcCCCeEeeeccc
Q 011332 260 EYTKNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGNVLGNGDIACDEYHKYKEDVKLMAKTGLDAYRFSISW 339 (488)
Q Consensus 260 s~~~~~FP~~FlwG~AtSA~QvEG~~~~~gkg~SiWD~f~~~~~~~~~gd~a~D~Y~rykeDI~LmkelGvnayRFSIsW 339 (488)
++.+.+||++|+||+|||||||||+++++||++|+||.|++.+.. .++++||||||||+|||+||++||+|+|||||+|
T Consensus 24 ~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~~~~-~~~~~a~D~YhrY~eDI~Lm~~lG~~aYRfSIsW 102 (503)
T PLN02849 24 DYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHSRNM-SNGDIACDGYHKYKEDVKLMVETGLDAFRFSISW 102 (503)
T ss_pred CCccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeeccCCC-CCCCccccHHHhHHHHHHHHHHcCCCeEEEeccH
Confidence 355678999999999999999999999999999999999875421 3789999999999999999999999999999999
Q ss_pred cccccCCCCCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCcccccccCCCccceee---------------------
Q 011332 340 SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV--------------------- 398 (488)
Q Consensus 340 sRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~DlPqwL~dkyGGWln~~iv--------------------- 398 (488)
|||+|+|+|.+|++|++||+++||+|+++||+|||||+|||+|+||+++||||+|++++
T Consensus 103 sRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk~W 182 (503)
T PLN02849 103 SRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRIIKDFTAYADVCFREFGNHVKFW 182 (503)
T ss_pred HhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchHHHHHHHHHHHHHHHhcCcCCEE
Confidence 99999998899999999999999999999999999999999999999999999998864
Q ss_pred --------------------------------------------------------------------------------
Q 011332 399 -------------------------------------------------------------------------------- 398 (488)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (488)
T Consensus 183 iT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~~~~~~ 262 (503)
T PLN02849 183 TTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLFALGFT 262 (503)
T ss_pred EEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECceee
Confidence
Q ss_pred ----------------------eeCCccccChhHHHHHhhCCCCCccchhhhhhcccccceeeeecceeeEeec
Q 011332 399 ----------------------VANPLVYGDYPKIMKQNAGSRLPAFTDHESQQIKGSADFIGVINYYTVYIKD 450 (488)
Q Consensus 399 ----------------------~~~Pi~fgdYp~~m~~~~GdRLP~FT~~E~~~lkGS~DF~gln~y~t~y~~~ 450 (488)
++||++.|+||+.|++.+++++|.|+++|.+.|+|++||+|+|||++.+++.
T Consensus 263 P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~ 336 (503)
T PLN02849 263 PSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGSSDFIGVIHYLAASVTN 336 (503)
T ss_pred cCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEeccchhhccc
Confidence 0244457999999999999999999999999999999999999999988874
No 5
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=7.2e-57 Score=477.08 Aligned_cols=188 Identities=37% Similarity=0.644 Sum_probs=170.1
Q ss_pred cCCCCCCCeehhhhhhhhhcCccCCCCCCCceeeecccC-Ccc---c-------------CCCCccccccccChHHHHHH
Q 011332 263 KNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHA-GNV---L-------------GNGDIACDEYHKYKEDVKLM 325 (488)
Q Consensus 263 ~~~FP~~FlwG~AtSA~QvEG~~~~~gkg~SiWD~f~~~-~~~---~-------------~~gd~a~D~Y~rykeDI~Lm 325 (488)
..+||++|+||+|||||||||+++++||++|+||.|++. +++ . .++++||||||||+|||+||
T Consensus 3 ~~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm 82 (478)
T PRK09593 3 KMPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALF 82 (478)
T ss_pred cccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHHH
Confidence 356999999999999999999999999999999999873 222 1 14788999999999999999
Q ss_pred HHcCCCeEeeeccccccccCCC-CCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCcccccccCCCccceee------
Q 011332 326 AKTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV------ 398 (488)
Q Consensus 326 kelGvnayRFSIsWsRI~P~G~-G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~DlPqwL~dkyGGWln~~iv------ 398 (488)
++||+|+|||||+||||+|+|. +.+|++|++||+++||+|+++||+|+|||||||+|+||+++||||+|++++
T Consensus 83 ~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~Y 162 (478)
T PRK09593 83 AEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERL 162 (478)
T ss_pred HHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHH
Confidence 9999999999999999999985 569999999999999999999999999999999999999999999999874
Q ss_pred --------------------------------------------------------------------------------
Q 011332 399 -------------------------------------------------------------------------------- 398 (488)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (488)
T Consensus 163 A~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~~~~~~~a~h~~llAHa~A~~~~~~~~~~g~VGi~~~~~ 242 (478)
T PRK09593 163 CRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENKEQVKYQAAHHELVASAIATKIAHEVDPENKVGCMLAAG 242 (478)
T ss_pred HHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence
Q ss_pred ------------------------eeCCccccChhHHHHHhhCC--CCCccchhhhhhcc-cccceeeeecceeeEeec
Q 011332 399 ------------------------VANPLVYGDYPKIMKQNAGS--RLPAFTDHESQQIK-GSADFIGVINYYTVYIKD 450 (488)
Q Consensus 399 ------------------------~~~Pi~fgdYp~~m~~~~Gd--RLP~FT~~E~~~lk-GS~DF~gln~y~t~y~~~ 450 (488)
+++|+..|+||+.|++.+++ .+|.||++|.+.|| |++||+|||||++.++++
T Consensus 243 ~~~P~~~~~~D~~aa~~~~~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~DFlGiNyYt~~~v~~ 321 (478)
T PRK09593 243 QYYPNTCHPEDVWAAMKEDRENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKENTVDFISFSYYSSRVASG 321 (478)
T ss_pred eeEeCCCCHHHHHHHHHHHHHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCccccc
Confidence 13677789999999999864 56789999999996 999999999999999875
No 6
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=1.2e-55 Score=467.54 Aligned_cols=186 Identities=36% Similarity=0.675 Sum_probs=166.7
Q ss_pred CCCCCCeehhhhhhhhhcCccCCCCCCCceeeecc---cC--Cccc-----C---CCCccccccccChHHHHHHHHcCCC
Q 011332 265 DFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFA---HA--GNVL-----G---NGDIACDEYHKYKEDVKLMAKTGLD 331 (488)
Q Consensus 265 ~FP~~FlwG~AtSA~QvEG~~~~~gkg~SiWD~f~---~~--~~~~-----~---~gd~a~D~Y~rykeDI~LmkelGvn 331 (488)
+||++|+||+|||||||||+++++|||+|+||.|+ +. +++. + ++++||||||||+|||+||++||+|
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 59999999999999999999999999999999998 31 2221 1 4688999999999999999999999
Q ss_pred eEeeeccccccccCCC-CCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCcccccccCCCccceee------------
Q 011332 332 AYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV------------ 398 (488)
Q Consensus 332 ayRFSIsWsRI~P~G~-G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~DlPqwL~dkyGGWln~~iv------------ 398 (488)
+|||||+||||+|+|. +.+|++|++||+++|++|+++||+|||||||||+|+||+++||||+|++++
T Consensus 83 ~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 83 CFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred EEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHH
Confidence 9999999999999985 458999999999999999999999999999999999999999999999864
Q ss_pred --------------------------------------------------------------------------------
Q 011332 399 -------------------------------------------------------------------------------- 398 (488)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (488)
T Consensus 163 ~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~~~~~~~~~~h~~llAha~A~~~~~~~~~~~~iG~~~~~~~ 242 (476)
T PRK09589 163 RYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGEDREQIMYQAAHYELVASALAVKTGHEINPDFQIGCMIAMCP 242 (476)
T ss_pred HhcCCCCEEEEecchhhhhccccccCCccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeCCe
Confidence
Q ss_pred -----------------------eeCCccccChhHHHHHhhCCC--CCccchhhhhhc-ccccceeeeecceeeEeec
Q 011332 399 -----------------------VANPLVYGDYPKIMKQNAGSR--LPAFTDHESQQI-KGSADFIGVINYYTVYIKD 450 (488)
Q Consensus 399 -----------------------~~~Pi~fgdYp~~m~~~~GdR--LP~FT~~E~~~l-kGS~DF~gln~y~t~y~~~ 450 (488)
+++|++.|+||+.|++.++++ .|.||++|.+.| +|++||+|||||++.+++.
T Consensus 243 ~~P~~~~~~d~~aa~~~~~~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DFlGiNyYts~~v~~ 320 (476)
T PRK09589 243 IYPLTCAPNDMMMATKAMHRRYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCVDYIGFSYYMSFATKF 320 (476)
T ss_pred eeeCCCCHHHHHHHHHHHHhccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCccccc
Confidence 136667899999999988652 478999999988 6999999999999988874
No 7
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=2e-56 Score=469.48 Aligned_cols=188 Identities=56% Similarity=1.077 Sum_probs=165.5
Q ss_pred CCCCCCCeehhhhhhhhhcCccCCCCCCCceeeecccC-Cccc--CCCCccccccccChHHHHHHHHcCCCeEeeecccc
Q 011332 264 NDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHA-GNVL--GNGDIACDEYHKYKEDVKLMAKTGLDAYRFSISWS 340 (488)
Q Consensus 264 ~~FP~~FlwG~AtSA~QvEG~~~~~gkg~SiWD~f~~~-~~~~--~~gd~a~D~Y~rykeDI~LmkelGvnayRFSIsWs 340 (488)
.+||++|+||+|||||||||++++|||++|+||.|++. +++. .++++||||||||+|||+||++||+|+|||||+|+
T Consensus 3 ~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W~ 82 (455)
T PF00232_consen 3 KKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISWS 82 (455)
T ss_dssp GGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--HH
T ss_pred CCCCCCCeEEEeceeccccceecCCCCCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecchh
Confidence 57999999999999999999999999999999999997 3332 25889999999999999999999999999999999
Q ss_pred ccccCC-CCCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCcccccccCCCccceee---------------------
Q 011332 341 RLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV--------------------- 398 (488)
Q Consensus 341 RI~P~G-~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~DlPqwL~dkyGGWln~~iv--------------------- 398 (488)
||+|+| .|.+|++|++||+++|++|+++||+|||||+|||+|+||++ +|||+|++++
T Consensus 83 Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w 161 (455)
T PF00232_consen 83 RIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKYW 161 (455)
T ss_dssp HHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSEE
T ss_pred heeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcceE
Confidence 999999 89999999999999999999999999999999999999998 8999999985
Q ss_pred --------------------------------------------------------------------------------
Q 011332 399 -------------------------------------------------------------------------------- 398 (488)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (488)
T Consensus 162 ~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~~Aa~ 241 (455)
T PF00232_consen 162 ITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPDGKIGIALNFSPFYPLSPSPEDDVAAAE 241 (455)
T ss_dssp EEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCTSEEEEEEEEEEEEESSSSHHHHHHHHH
T ss_pred EeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccceEEeccccccccCCCCccchhhHHHHH
Confidence
Q ss_pred ---------eeCCccccChhHHHHHhhCCC--CCccchhhhhhcccccceeeeecceeeEeecCC
Q 011332 399 ---------VANPLVYGDYPKIMKQNAGSR--LPAFTDHESQQIKGSADFIGVINYYTVYIKDNP 452 (488)
Q Consensus 399 ---------~~~Pi~fgdYp~~m~~~~GdR--LP~FT~~E~~~lkGS~DF~gln~y~t~y~~~~~ 452 (488)
++||++.|+||..|++.++.+ +|.||++|++.|+|++||+|||||++.+++..+
T Consensus 242 ~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~ 306 (455)
T PF00232_consen 242 RADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADP 306 (455)
T ss_dssp HHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESS
T ss_pred HHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeeccCc
Confidence 158889999999999999887 999999999999999999999999999998755
No 8
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=1.9e-55 Score=465.02 Aligned_cols=184 Identities=38% Similarity=0.741 Sum_probs=168.0
Q ss_pred CCCCCCCeehhhhhhhhhcCccCCCCCCCceeeecccCCcccCCCCccccccccChHHHHHHHHcCCCeEeeeccccccc
Q 011332 264 NDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGNVLGNGDIACDEYHKYKEDVKLMAKTGLDAYRFSISWSRLI 343 (488)
Q Consensus 264 ~~FP~~FlwG~AtSA~QvEG~~~~~gkg~SiWD~f~~~~~~~~~gd~a~D~Y~rykeDI~LmkelGvnayRFSIsWsRI~ 343 (488)
.+||++|+||+||||||+||+++++||++|+||.|++.... .++++||||||||+|||+||++||+|+|||||+||||+
T Consensus 3 ~~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~~-~~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~ 81 (469)
T PRK13511 3 KTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENYW-FTPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWSRIF 81 (469)
T ss_pred CCCCCCCEEEeechHhhhcCCcCCCCCccchhhcccccCCC-CCCCcccchhhhhHHHHHHHHHhCCCEEEeeccHhhcC
Confidence 45999999999999999999999999999999999874321 27899999999999999999999999999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCcccccccCCCccceee-------------------------
Q 011332 344 PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV------------------------- 398 (488)
Q Consensus 344 P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~DlPqwL~dkyGGWln~~iv------------------------- 398 (488)
|+|+|.+|++|++||+++||+|+++||+|+|||||||+|+||+++ |||+|++++
T Consensus 82 P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgdVk~W~T~NE 160 (469)
T PRK13511 82 PDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPEVKYWTTFNE 160 (469)
T ss_pred cCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCCCCEEEEccc
Confidence 999889999999999999999999999999999999999999986 999999874
Q ss_pred --------------------------------------------------------------------------------
Q 011332 399 -------------------------------------------------------------------------------- 398 (488)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (488)
T Consensus 161 P~~~~~~gy~~G~~~Pg~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~~d~~aa~~~~~ 240 (469)
T PRK13511 161 IGPIGDGQYLVGKFPPGIKYDLAKVFQSHHNMMVAHARAVKLFKDKGYKGEIGVVHALPTKYPIDPDNPEDVRAAELEDI 240 (469)
T ss_pred hhhhhhcchhhcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCceEeeCCCCCHHHHHHHHHHHH
Confidence
Q ss_pred -----eeCCccccChhHHHHHhh-------CCCCCccchhhhhhccc---ccceeeeecceeeEeec
Q 011332 399 -----VANPLVYGDYPKIMKQNA-------GSRLPAFTDHESQQIKG---SADFIGVINYYTVYIKD 450 (488)
Q Consensus 399 -----~~~Pi~fgdYp~~m~~~~-------GdRLP~FT~~E~~~lkG---S~DF~gln~y~t~y~~~ 450 (488)
+++|++.|+||+.|++.+ |.++ .||++|.+.||+ ++||+|||||++.+++.
T Consensus 241 ~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l-~~t~~d~~~ik~~~~~~DFiGiNyYt~~~v~~ 306 (469)
T PRK13511 241 IHNKFILDATYLGYYSEETMEGVNHILEANGGSL-DIRDEDFEILKAAKDLNDFLGINYYMSDWMRA 306 (469)
T ss_pred HhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCC-CCCHHHHHHHhcCCCCCCEEEechhhcceeec
Confidence 147888999999999865 5566 899999999974 68999999999989875
No 9
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=4.4e-55 Score=462.28 Aligned_cols=184 Identities=35% Similarity=0.666 Sum_probs=167.8
Q ss_pred CCCCCCeehhhhhhhhhcCccCCCCCCCceeeecccCCcccCCCCccccccccChHHHHHHHHcCCCeEeeecccccccc
Q 011332 265 DFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGNVLGNGDIACDEYHKYKEDVKLMAKTGLDAYRFSISWSRLIP 344 (488)
Q Consensus 265 ~FP~~FlwG~AtSA~QvEG~~~~~gkg~SiWD~f~~~~~~~~~gd~a~D~Y~rykeDI~LmkelGvnayRFSIsWsRI~P 344 (488)
+||++|+||+|||||||||+++++|||+|+||.+++.... .++++||||||||+|||+||++||+|+|||||+||||+|
T Consensus 3 ~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~~~~-~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P 81 (467)
T TIGR01233 3 TLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYW-YTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSRIFP 81 (467)
T ss_pred CCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccCCCC-CCCCccCchhhhHHHHHHHHHHcCCCEEEEecchhhccC
Confidence 5999999999999999999999999999999998864221 267899999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCcccccccCCCccceee--------------------------
Q 011332 345 NGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV-------------------------- 398 (488)
Q Consensus 345 ~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~DlPqwL~dkyGGWln~~iv-------------------------- 398 (488)
+|+|.+|++|++||+++|++|+++||+|||||+|||+|+||+++ |||+|++++
T Consensus 82 ~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgdVk~WiT~NEP 160 (467)
T TIGR01233 82 TGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPEVNYWTTFNEI 160 (467)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCCCCEEEEecch
Confidence 99889999999999999999999999999999999999999986 999999874
Q ss_pred --------------------------------------------------------------------------------
Q 011332 399 -------------------------------------------------------------------------------- 398 (488)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (488)
T Consensus 161 ~~~~~~gy~~G~~~Pg~~~~~~~~~~a~hn~l~AHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~~D~~aA~~~~~~ 240 (467)
T TIGR01233 161 GPIGDGQYLVGKFPPGIKYDLAKVFQSHHNMMVSHARAVKLYKDKGYKGEIGVVHALPTKYPYDPENPADVRAAELEDII 240 (467)
T ss_pred hhhhhccchhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCceeEECCCCCHHHHHHHHHHHHH
Confidence
Q ss_pred ----eeCCccccChhHHHHHhhCCC------CCccchhhhhhc---ccccceeeeecceeeEeec
Q 011332 399 ----VANPLVYGDYPKIMKQNAGSR------LPAFTDHESQQI---KGSADFIGVINYYTVYIKD 450 (488)
Q Consensus 399 ----~~~Pi~fgdYp~~m~~~~GdR------LP~FT~~E~~~l---kGS~DF~gln~y~t~y~~~ 450 (488)
++||++.|+||+.|++.++.+ .|.+|++|.+.| +|++||+|+|||++.+++.
T Consensus 241 ~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v~~ 305 (467)
T TIGR01233 241 HNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQA 305 (467)
T ss_pred hhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceeecc
Confidence 147888999999999977643 377999999989 5999999999999988874
No 10
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=9.5e-55 Score=460.88 Aligned_cols=189 Identities=35% Similarity=0.692 Sum_probs=168.9
Q ss_pred ccCCCCCCCeehhhhhhhhhcCccCCCCCCCceeeecc---cC--Ccc-----cC---CCCccccccccChHHHHHHHHc
Q 011332 262 TKNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFA---HA--GNV-----LG---NGDIACDEYHKYKEDVKLMAKT 328 (488)
Q Consensus 262 ~~~~FP~~FlwG~AtSA~QvEG~~~~~gkg~SiWD~f~---~~--~~~-----~~---~gd~a~D~Y~rykeDI~Lmkel 328 (488)
.+.+||++|+||+||||||+||+++++|||+|+||.|+ +. +++ .+ ++++||||||||+|||+||++|
T Consensus 2 ~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~el 81 (477)
T PRK15014 2 KKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAEM 81 (477)
T ss_pred CcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHHc
Confidence 34679999999999999999999999999999999998 31 112 11 5689999999999999999999
Q ss_pred CCCeEeeeccccccccCCC-CCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCcccccccCCCccceee---------
Q 011332 329 GLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV--------- 398 (488)
Q Consensus 329 GvnayRFSIsWsRI~P~G~-G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~DlPqwL~dkyGGWln~~iv--------- 398 (488)
|+|+|||||+||||+|+|. +.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|++++
T Consensus 82 G~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~~ 161 (477)
T PRK15014 82 GFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEV 161 (477)
T ss_pred CCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 9999999999999999985 568999999999999999999999999999999999999999999998764
Q ss_pred --------------------------------------------------------------------------------
Q 011332 399 -------------------------------------------------------------------------------- 398 (488)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (488)
T Consensus 162 ~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~~~~~~~~~~h~~llAHa~A~~~~~~~~~~~~IGi~~~ 241 (477)
T PRK15014 162 VFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENPEETMYQVLHHQFVASALAVKAARRINPEMKVGCMLA 241 (477)
T ss_pred HHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence
Q ss_pred --------------------------eeCCccccChhHHHHHhhCCCC--Cccchhhhhhc-ccccceeeeecceeeEee
Q 011332 399 --------------------------VANPLVYGDYPKIMKQNAGSRL--PAFTDHESQQI-KGSADFIGVINYYTVYIK 449 (488)
Q Consensus 399 --------------------------~~~Pi~fgdYp~~m~~~~GdRL--P~FT~~E~~~l-kGS~DF~gln~y~t~y~~ 449 (488)
+++|++.|+||+.|++.++++. |.+|++|.+.| +|++||+|||||++.+++
T Consensus 242 ~~~~~P~~~~~~D~~Aa~~~~~~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~~~DFlGiNyYt~~~v~ 321 (477)
T PRK15014 242 MVPLYPYSCNPDDVMFAQESMRERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREGTCDYLGFSYYMTNAVK 321 (477)
T ss_pred CceeccCCCCHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEcceeCeeec
Confidence 1256667999999999998765 78999999988 699999999999999987
Q ss_pred c
Q 011332 450 D 450 (488)
Q Consensus 450 ~ 450 (488)
.
T Consensus 322 ~ 322 (477)
T PRK15014 322 A 322 (477)
T ss_pred c
Confidence 4
No 11
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=1.5e-53 Score=451.56 Aligned_cols=187 Identities=34% Similarity=0.584 Sum_probs=170.3
Q ss_pred CCCCCCCeehhhhhhhhhcCccCCCCCCCceeeecccC-Ccc-------------c---CCCCccccccccChHHHHHHH
Q 011332 264 NDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHA-GNV-------------L---GNGDIACDEYHKYKEDVKLMA 326 (488)
Q Consensus 264 ~~FP~~FlwG~AtSA~QvEG~~~~~gkg~SiWD~f~~~-~~~-------------~---~~gd~a~D~Y~rykeDI~Lmk 326 (488)
.+||++|+||+||||||+||+++++|||+|+||.|++. +++ . .++++||||||||+|||+||+
T Consensus 2 ~~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~ 81 (474)
T PRK09852 2 SVFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMA 81 (474)
T ss_pred CCCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHH
Confidence 36999999999999999999999999999999999873 222 1 146889999999999999999
Q ss_pred HcCCCeEeeeccccccccCCC-CCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCcccccccCCCccceee-------
Q 011332 327 KTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV------- 398 (488)
Q Consensus 327 elGvnayRFSIsWsRI~P~G~-G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~DlPqwL~dkyGGWln~~iv------- 398 (488)
+||+|+|||||+|+||+|+|+ +.+|++|++||+++|++|+++||+|||||+|||+|+||+++||||+|++++
T Consensus 82 ~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya 161 (474)
T PRK09852 82 EMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYA 161 (474)
T ss_pred HcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999999999999985 468999999999999999999999999999999999999999999999864
Q ss_pred --------------------------------------------------------------------------------
Q 011332 399 -------------------------------------------------------------------------------- 398 (488)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (488)
T Consensus 162 ~~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~IGi~~~~~~ 241 (474)
T PRK09852 162 RTCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQDQVKYQAAHHELVASALATKIAHEVNPQNQVGCMLAGGN 241 (474)
T ss_pred HHHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCchHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCe
Confidence
Q ss_pred -----------------------eeCCccccChhHHHHHhhCC--CCCccchhhhhhcccccceeeeecceeeEeec
Q 011332 399 -----------------------VANPLVYGDYPKIMKQNAGS--RLPAFTDHESQQIKGSADFIGVINYYTVYIKD 450 (488)
Q Consensus 399 -----------------------~~~Pi~fgdYp~~m~~~~Gd--RLP~FT~~E~~~lkGS~DF~gln~y~t~y~~~ 450 (488)
+++|++.|+||+.|++.+++ .+|.||++|.+.|+|++||+|+|||++.+++.
T Consensus 242 ~~P~~~~~~d~~AA~~~~~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlGiNyYt~~~v~~ 318 (474)
T PRK09852 242 FYPYSCKPEDVWAALEKDRENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVSFSYYASRCASA 318 (474)
T ss_pred eeeCCCCHHHHHHHHHHHHHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEEEccccCeeccc
Confidence 13777889999999999975 47999999999999999999999999988874
No 12
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.8e-53 Score=443.00 Aligned_cols=204 Identities=38% Similarity=0.646 Sum_probs=170.3
Q ss_pred CCCCCCCeehhhhhhhhhcCccCCCCCCCceeeecccCC---ccc--CCCCccccccccChHHHHHHHHcCCCeEeeecc
Q 011332 264 NDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAG---NVL--GNGDIACDEYHKYKEDVKLMAKTGLDAYRFSIS 338 (488)
Q Consensus 264 ~~FP~~FlwG~AtSA~QvEG~~~~~gkg~SiWD~f~~~~---~~~--~~gd~a~D~Y~rykeDI~LmkelGvnayRFSIs 338 (488)
.+||++|+||+||||+|+||++++|||++|+||.|++.. ... .+++.||||||||+|||+||++||+|+|||||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 579999999999999999999999999999999999943 222 368999999999999999999999999999999
Q ss_pred ccccccCCCC-CCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCcccccccCCCccceeeeeCCccccChhHHHHHhhC
Q 011332 339 WSRLIPNGRG-PVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIVVANPLVYGDYPKIMKQNAG 417 (488)
Q Consensus 339 WsRI~P~G~G-~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~DlPqwL~dkyGGWln~~iv~~~Pi~fgdYp~~m~~~~G 417 (488)
||||+|+|++ ++|++|++||+++||+|+++||||+|||+|||+|+||+++||||+||++|. .|.+|+++|++++|
T Consensus 82 WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~----~F~~ya~~vf~~f~ 157 (460)
T COG2723 82 WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVD----AFARYAATVFERFG 157 (460)
T ss_pred EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHH----HHHHHHHHHHHHhc
Confidence 9999999876 899999999999999999999999999999999999999999999999997 69999999999999
Q ss_pred CCCCccchhhhhhcccccceeeeecceeeEeecCCCccccCCCccccc-ccceeeec
Q 011332 418 SRLPAFTDHESQQIKGSADFIGVINYYTVYIKDNPSSLKQKHRDWSAD-TATKFFFK 473 (488)
Q Consensus 418 dRLP~FT~~E~~~lkGS~DF~gln~y~t~y~~~~~~~~~~~~~~~~~d-~~~~~~~~ 473 (488)
|+|.+|+|.++..+-..+-|+.-.|+... .+.....++.||.+.++ .+++..++
T Consensus 158 dkVk~W~TFNE~n~~~~~~y~~~~~~p~~--~~~~~~~qa~hh~~lA~A~avk~~~~ 212 (460)
T COG2723 158 DKVKYWFTFNEPNVVVELGYLYGGHPPGI--VDPKAAYQVAHHMLLAHALAVKAIKK 212 (460)
T ss_pred CcceEEEEecchhhhhcccccccccCCCc--cCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999666666433333222222111 11122344566666655 55665554
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=3.5e-51 Score=428.06 Aligned_cols=183 Identities=52% Similarity=1.012 Sum_probs=169.5
Q ss_pred CCCCCeehhhhhhhhhcCccCCCCCCCceeeecccC-Cccc--CCCCccccccccChHHHHHHHHcCCCeEeeecccccc
Q 011332 266 FPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHA-GNVL--GNGDIACDEYHKYKEDVKLMAKTGLDAYRFSISWSRL 342 (488)
Q Consensus 266 FP~~FlwG~AtSA~QvEG~~~~~gkg~SiWD~f~~~-~~~~--~~gd~a~D~Y~rykeDI~LmkelGvnayRFSIsWsRI 342 (488)
||++|+||+||||||+||+++++||++|+||.+.+. +++. .++++||||||+|+|||+||++||+|+|||||+|+||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri 80 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRI 80 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhc
Confidence 899999999999999999999999999999999875 3322 2678999999999999999999999999999999999
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCcccccccCCCccceee------------------------
Q 011332 343 IPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV------------------------ 398 (488)
Q Consensus 343 ~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~DlPqwL~dkyGGWln~~iv------------------------ 398 (488)
+|+|+|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++ |||+|++++
T Consensus 81 ~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~ 159 (427)
T TIGR03356 81 FPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWITL 159 (427)
T ss_pred ccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEe
Confidence 9998889999999999999999999999999999999999999988 999998753
Q ss_pred --------------------------------------------------------------------------------
Q 011332 399 -------------------------------------------------------------------------------- 398 (488)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (488)
T Consensus 160 NEp~~~~~~~y~~G~~~P~~~~~~~~~~~~hnll~Aha~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~ 239 (427)
T TIGR03356 160 NEPWCSAFLGYGLGVHAPGLRDLRAALQAAHHLLLAHGLAVQALRANGPGAQVGIVLNLTPVYPASDSPEDVAAARRADG 239 (427)
T ss_pred cCcceecccchhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeeeeCCCCHHHHHHHHHHHH
Confidence
Q ss_pred -----eeCCccccChhHHHHHhhCCCCCccchhhhhhcccccceeeeecceeeEeec
Q 011332 399 -----VANPLVYGDYPKIMKQNAGSRLPAFTDHESQQIKGSADFIGVINYYTVYIKD 450 (488)
Q Consensus 399 -----~~~Pi~fgdYp~~m~~~~GdRLP~FT~~E~~~lkGS~DF~gln~y~t~y~~~ 450 (488)
++||++.|+||+.|++.++ .+|.||++|.+.++|++||+|+|||++.+++.
T Consensus 240 ~~~~~f~d~~~~G~yP~~~~~~l~-~~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~ 295 (427)
T TIGR03356 240 LLNRWFLDPLLKGRYPEDLLEYLG-DAPFVQDGDLETIAQPLDFLGINYYTRSVVAA 295 (427)
T ss_pred HHhhhhhHHHhCCCCCHHHHHHhc-cCCCCCHHHHHHhcCCCCEEEEeccccceecc
Confidence 1477788999999999998 47999999999999999999999999988875
No 14
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=99.77 E-value=2.9e-19 Score=190.52 Aligned_cols=132 Identities=17% Similarity=0.157 Sum_probs=107.0
Q ss_pred cccccceeEeCCchhHHHhhhhccccccccCCCccccccchhhhhhhhhhcceeeccccCCCCCcCCCCceeEEeccchh
Q 011332 89 GDSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRKGIVRVADIKFPLPYRAKSFSLVIVSDAVDY 168 (488)
Q Consensus 89 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~r~~sfs~~~vsd~~Dy 168 (488)
...+.+.|+|=|.+-.-|.+-+|+. +|.+|.=|+++ | +.|.-.+. +|.... -.|+
T Consensus 380 ~~~~~~~~~v~P~Glr~~L~yiK~~----Y~np~iyItEN----------G---~~d~~~~~------~~~~~~--l~D~ 434 (524)
T KOG0626|consen 380 PKAGSDWLPVYPWGLRKLLNYIKDK----YGNPPIYITEN----------G---FDDLDGGT------KSLEVA--LKDT 434 (524)
T ss_pred ccccccceeeccHHHHHHHHHHHhh----cCCCcEEEEeC----------C---CCcccccc------cchhhh--hcch
Confidence 3457889999999999999999999 99999888877 2 23332221 122221 2466
Q ss_pred hhHHHHHHHHHHHhhccc-CCcEEeeccccceeccccccccccCCCcceeeeEEEecccCCccccchHHHHHHHHhhhcc
Q 011332 169 LSPKYLNRTLPELARVSV-DGVVIFAGYPGQHRAKVSELSKFGRPAKLRSSTWWIRYFLQNSLEENEVAAKKFDQASVKR 247 (488)
Q Consensus 169 l~~~YLn~~L~ai~ra~~-dGv~V~~GY~~WSl~Dn~~~fEW~~Gyk~RfGl~~VDf~~~~~~RtpK~Sak~f~~vi~~~ 247 (488)
.++.|+..+|.++++|+. |||||+ ||++|||||| |||..||+.||||+||||.++ ++|+||.|++||+++++.+
T Consensus 435 ~Ri~Y~~~~L~~~~kAi~~dgvnv~-GYf~WSLmDn---fEw~~Gy~~RFGlyyVDf~d~-l~R~pK~Sa~wy~~fl~~~ 509 (524)
T KOG0626|consen 435 KRIEYLQNHLQAVLKAIKEDGVNVK-GYFVWSLLDN---FEWLDGYKVRFGLYYVDFKDP-LKRYPKLSAKWYKKFLKGK 509 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcee-eEEEeEcccc---hhhhcCcccccccEEEeCCCC-CcCCchhHHHHHHHHHcCC
Confidence 677777777777777765 899999 9999999999 999999999999999999998 8999999999999999876
Q ss_pred CCC
Q 011332 248 SYK 250 (488)
Q Consensus 248 ~yp 250 (488)
..+
T Consensus 510 ~~~ 512 (524)
T KOG0626|consen 510 VKP 512 (524)
T ss_pred CCC
Confidence 654
No 15
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=99.77 E-value=2e-19 Score=190.00 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=66.5
Q ss_pred hhhhHHHHHHHHHHHhhcccCCcEEeeccccceeccccccccccCCCcceeeeEEEecccCCccccchHHHHHHHHhhhc
Q 011332 167 DYLSPKYLNRTLPELARVSVDGVVIFAGYPGQHRAKVSELSKFGRPAKLRSSTWWIRYFLQNSLEENEVAAKKFDQASVK 246 (488)
Q Consensus 167 Dyl~~~YLn~~L~ai~ra~~dGv~V~~GY~~WSl~Dn~~~fEW~~Gyk~RfGl~~VDf~~~~~~RtpK~Sak~f~~vi~~ 246 (488)
|-.++.||.++|.++.+|++|||+|+ ||++|||||| |||+.||++||||++||| .++.+|+||+|++||+++|++
T Consensus 378 D~~Ri~yl~~hl~~v~~Ai~dGv~V~-GY~~WSl~Dn---~Ew~~Gy~~rfGl~~VD~-~~~~~R~pK~S~~~y~~~i~~ 452 (455)
T PF00232_consen 378 DDYRIDYLQDHLNQVLKAIEDGVNVR-GYFAWSLLDN---FEWAEGYKKRFGLVYVDF-FDTLKRTPKKSAYWYKDFIRS 452 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-EEE-EEEEETSB------BGGGGGGSE--SEEEET-TTTTEEEEBHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhhccCCCee-eEeeeccccc---cccccCccCccCceEEcC-CCCcCeeeccHHHHHHHHHHh
Confidence 56688999999999999999999999 9999999999 999999999999999997 566789999999999999998
Q ss_pred cCC
Q 011332 247 RSY 249 (488)
Q Consensus 247 ~~y 249 (488)
++|
T Consensus 453 ng~ 455 (455)
T PF00232_consen 453 NGF 455 (455)
T ss_dssp TEE
T ss_pred cCC
Confidence 875
No 16
>PLN02849 beta-glucosidase
Probab=99.75 E-value=5.1e-19 Score=189.79 Aligned_cols=79 Identities=10% Similarity=0.059 Sum_probs=75.0
Q ss_pred chhhhHHHHHHHHHHHhhcccCCcEEeeccccceeccccccccccCCCcceeeeEEEecccCCccccchHHHHHHHHhhh
Q 011332 166 VDYLSPKYLNRTLPELARVSVDGVVIFAGYPGQHRAKVSELSKFGRPAKLRSSTWWIRYFLQNSLEENEVAAKKFDQASV 245 (488)
Q Consensus 166 ~Dyl~~~YLn~~L~ai~ra~~dGv~V~~GY~~WSl~Dn~~~fEW~~Gyk~RfGl~~VDf~~~~~~RtpK~Sak~f~~vi~ 245 (488)
.|..++.||.+||.++.+|++|||+|+ ||++||+||| |||..||++||||++|||.+++.+|+||+|++||+++|+
T Consensus 406 ~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~-GY~~WSl~Dn---fEW~~Gy~~RfGLi~VD~~~~~~~R~pK~S~~wy~~ii~ 481 (503)
T PLN02849 406 KDTPRIEYLHAYIGAVLKAVRNGSDTR-GYFVWSFMDL---YELLKGYEFSFGLYSVNFSDPHRKRSPKLSAHWYSAFLK 481 (503)
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCCCEE-EEeeccchhh---hchhccccCccceEEECCCCCCcceecccHHHHHHHHHH
Confidence 377789999999999999999999999 9999999999 999999999999999999988778999999999999999
Q ss_pred ccC
Q 011332 246 KRS 248 (488)
Q Consensus 246 ~~~ 248 (488)
+++
T Consensus 482 ~~~ 484 (503)
T PLN02849 482 GNS 484 (503)
T ss_pred hCC
Confidence 876
No 17
>PLN02998 beta-glucosidase
Probab=99.75 E-value=7.2e-19 Score=188.41 Aligned_cols=77 Identities=12% Similarity=0.046 Sum_probs=73.6
Q ss_pred hhhhHHHHHHHHHHHhhcccCCcEEeeccccceeccccccccccCCCcceeeeEEEecccCCccccchHHHHHHHHhhhc
Q 011332 167 DYLSPKYLNRTLPELARVSVDGVVIFAGYPGQHRAKVSELSKFGRPAKLRSSTWWIRYFLQNSLEENEVAAKKFDQASVK 246 (488)
Q Consensus 167 Dyl~~~YLn~~L~ai~ra~~dGv~V~~GY~~WSl~Dn~~~fEW~~Gyk~RfGl~~VDf~~~~~~RtpK~Sak~f~~vi~~ 246 (488)
|..++.||.+||.++.+|++|||+|+ ||++|||||| |||..||++||||++|||.+++.+|+||+|++||+++|++
T Consensus 412 D~~Ri~Yl~~hl~~~~kAi~dGv~V~-GY~~WSl~Dn---fEW~~Gy~~RfGLv~VD~~~~~~~R~pK~S~~wy~~ii~~ 487 (497)
T PLN02998 412 DTTRVKYLSSYIKAVLHSLRKGSDVK-GYFQWSLMDV---FELFGGYERSFGLLYVDFKDPSLKRSPKLSAHWYSSFLKG 487 (497)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCEE-EEeeccchhh---hchhccccCccceEEECCCCCCcceecccHHHHHHHHHhc
Confidence 66789999999999999999999999 9999999999 9999999999999999999887889999999999999987
Q ss_pred c
Q 011332 247 R 247 (488)
Q Consensus 247 ~ 247 (488)
+
T Consensus 488 ~ 488 (497)
T PLN02998 488 T 488 (497)
T ss_pred c
Confidence 6
No 18
>PLN02814 beta-glucosidase
Probab=99.75 E-value=8.6e-19 Score=188.10 Aligned_cols=81 Identities=6% Similarity=-0.004 Sum_probs=75.7
Q ss_pred hhhhHHHHHHHHHHHhhcccCCcEEeeccccceeccccccccccCCCcceeeeEEEecccCCccccchHHHHHHHHhhhc
Q 011332 167 DYLSPKYLNRTLPELARVSVDGVVIFAGYPGQHRAKVSELSKFGRPAKLRSSTWWIRYFLQNSLEENEVAAKKFDQASVK 246 (488)
Q Consensus 167 Dyl~~~YLn~~L~ai~ra~~dGv~V~~GY~~WSl~Dn~~~fEW~~Gyk~RfGl~~VDf~~~~~~RtpK~Sak~f~~vi~~ 246 (488)
|..++.||.+||.++.+|++|||+|+ ||++|||||| |||..||++||||++|||.+++.+|+||+|++||+++|++
T Consensus 407 D~~Ri~Yl~~hl~~l~~Ai~dGv~V~-GY~~WSllDn---fEW~~Gy~~RfGLvyVD~~~~~~~R~pK~S~~wy~~~i~~ 482 (504)
T PLN02814 407 DTPRVEFIQAYIGAVLNAIKNGSDTR-GYFVWSMIDL---YELLGGYTTSFGMYYVNFSDPGRKRSPKLSASWYTGFLNG 482 (504)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCEE-EEeeccchhh---hchhccccCccceEEECCCCCCcceeeecHHHHHHHHHhc
Confidence 67789999999999999999999999 9999999999 9999999999999999999987889999999999999987
Q ss_pred cCCCC
Q 011332 247 RSYKP 251 (488)
Q Consensus 247 ~~ypp 251 (488)
...+.
T Consensus 483 ~~~~~ 487 (504)
T PLN02814 483 TIDVA 487 (504)
T ss_pred CCChh
Confidence 65443
No 19
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=99.75 E-value=8.2e-19 Score=186.60 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=72.8
Q ss_pred hhhhHHHHHHHHHHHhhcccCCcEEeeccccceeccccccccccCCCcceeeeEEEecccCCccccchHHHHHHHHhhhc
Q 011332 167 DYLSPKYLNRTLPELARVSVDGVVIFAGYPGQHRAKVSELSKFGRPAKLRSSTWWIRYFLQNSLEENEVAAKKFDQASVK 246 (488)
Q Consensus 167 Dyl~~~YLn~~L~ai~ra~~dGv~V~~GY~~WSl~Dn~~~fEW~~Gyk~RfGl~~VDf~~~~~~RtpK~Sak~f~~vi~~ 246 (488)
|..++.||.++|.++.+|++|||+|+ ||++||+||| |||..||++||||++|||.++ +|+||+|++||+++|++
T Consensus 390 D~~Ri~Yl~~hl~~~~~Ai~dGv~v~-GY~~WSl~Dn---~Ew~~Gy~~RfGLv~VD~~t~--~R~~K~S~~wy~~ii~~ 463 (467)
T TIGR01233 390 DDGRIDYVKQHLEVLSDAIADGANVK-GYFIWSLMDV---FSWSNGYEKRYGLFYVDFDTQ--ERYPKKSAHWYKKLAET 463 (467)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCEE-EEeeccchhh---hchhccccCccceEEECCCCC--ccccccHHHHHHHHHHh
Confidence 66689999999999999999999999 9999999999 999999999999999999886 59999999999999998
Q ss_pred cCCC
Q 011332 247 RSYK 250 (488)
Q Consensus 247 ~~yp 250 (488)
+.++
T Consensus 464 ~~~~ 467 (467)
T TIGR01233 464 QVIE 467 (467)
T ss_pred cCCC
Confidence 7653
No 20
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=99.73 E-value=1.9e-18 Score=184.28 Aligned_cols=80 Identities=10% Similarity=0.092 Sum_probs=75.3
Q ss_pred hhhhHHHHHHHHHHHhhcccCCcEEeeccccceeccccccccccCC-CcceeeeEEEecccC---CccccchHHHHHHHH
Q 011332 167 DYLSPKYLNRTLPELARVSVDGVVIFAGYPGQHRAKVSELSKFGRP-AKLRSSTWWIRYFLQ---NSLEENEVAAKKFDQ 242 (488)
Q Consensus 167 Dyl~~~YLn~~L~ai~ra~~dGv~V~~GY~~WSl~Dn~~~fEW~~G-yk~RfGl~~VDf~~~---~~~RtpK~Sak~f~~ 242 (488)
|..++.||++||.++.+|++|||+|+ ||++|||||| |||..| |++||||++|||.++ +.+|+||+|++||++
T Consensus 389 D~~Ri~Yl~~hl~~~~~Ai~dGv~V~-GY~~WSl~Dn---~Ew~~G~y~~RfGLv~VD~~~~~~~t~~R~pK~S~~wy~~ 464 (474)
T PRK09852 389 DDYRISYLREHIRAMGEAIADGIPLM-GYTTWGCIDL---VSASTGEMSKRYGFVYVDRDDAGNGTLTRTRKKSFWWYKK 464 (474)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCEE-EEEeeccccc---ccccCCCccceeeeEEECCCCCCCcccceecccHHHHHHH
Confidence 66789999999999999999999999 9999999999 999999 999999999999986 678999999999999
Q ss_pred hhhccCCC
Q 011332 243 ASVKRSYK 250 (488)
Q Consensus 243 vi~~~~yp 250 (488)
+|++++.+
T Consensus 465 ii~~ng~~ 472 (474)
T PRK09852 465 VIASNGED 472 (474)
T ss_pred HHHhCCcc
Confidence 99987753
No 21
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=99.73 E-value=2.3e-18 Score=183.21 Aligned_cols=77 Identities=14% Similarity=0.151 Sum_probs=73.0
Q ss_pred hhhhHHHHHHHHHHHhhcccCCcEEeeccccceeccccccccccCCCcceeeeEEEecccCCccccchHHHHHHHHhhhc
Q 011332 167 DYLSPKYLNRTLPELARVSVDGVVIFAGYPGQHRAKVSELSKFGRPAKLRSSTWWIRYFLQNSLEENEVAAKKFDQASVK 246 (488)
Q Consensus 167 Dyl~~~YLn~~L~ai~ra~~dGv~V~~GY~~WSl~Dn~~~fEW~~Gyk~RfGl~~VDf~~~~~~RtpK~Sak~f~~vi~~ 246 (488)
|..++.||.+||.++.+|++|||+|+ ||++|||||| |||+.||++||||++|||.++ +|+||+|++||+++|++
T Consensus 392 D~~Ri~yl~~hl~~~~~Ai~dGv~v~-GY~~WSl~Dn---fEW~~Gy~~RfGl~~VD~~~~--~R~pK~S~~wy~~~i~~ 465 (469)
T PRK13511 392 DDKRIDYVKQHLEVISDAISDGANVK-GYFIWSLMDV---FSWSNGYEKRYGLFYVDFETQ--ERYPKKSAYWYKKLAET 465 (469)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCEE-EEeecccccc---cchhcCccCccceEEECCCcC--ccccccHHHHHHHHHHh
Confidence 66789999999999999999999999 9999999999 999999999999999999886 59999999999999998
Q ss_pred cCC
Q 011332 247 RSY 249 (488)
Q Consensus 247 ~~y 249 (488)
+++
T Consensus 466 ~~~ 468 (469)
T PRK13511 466 KVI 468 (469)
T ss_pred CCC
Confidence 765
No 22
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=99.72 E-value=3e-18 Score=182.78 Aligned_cols=78 Identities=15% Similarity=0.164 Sum_probs=73.6
Q ss_pred hhhhHHHHHHHHHHHhhcc-cCCcEEeeccccceeccccccccccCC-CcceeeeEEEecccC---CccccchHHHHHHH
Q 011332 167 DYLSPKYLNRTLPELARVS-VDGVVIFAGYPGQHRAKVSELSKFGRP-AKLRSSTWWIRYFLQ---NSLEENEVAAKKFD 241 (488)
Q Consensus 167 Dyl~~~YLn~~L~ai~ra~-~dGv~V~~GY~~WSl~Dn~~~fEW~~G-yk~RfGl~~VDf~~~---~~~RtpK~Sak~f~ 241 (488)
|..++.||.+||.++.+|+ +|||+|+ ||++|||||| |||..| |++||||++|||.++ +++|+||+|++||+
T Consensus 391 D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~-GY~~WSl~Dn---~Ew~~G~y~~RfGlv~VD~~~~~~~t~~R~pK~S~~wy~ 466 (476)
T PRK09589 391 DHYRIDYLAAHIREMKKAVVEDGVDLM-GYTPWGCIDL---VSAGTGEMKKRYGFIYVDKDNEGKGTLERSRKKSFYWYR 466 (476)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCeE-EEeecccccc---ccccCCccccceeeEEEcCCCCCCcccccccccHHHHHH
Confidence 6678999999999999999 8999999 9999999999 999999 999999999999987 67899999999999
Q ss_pred HhhhccC
Q 011332 242 QASVKRS 248 (488)
Q Consensus 242 ~vi~~~~ 248 (488)
++|++++
T Consensus 467 ~~i~~ng 473 (476)
T PRK09589 467 DVIANNG 473 (476)
T ss_pred HHHHhcC
Confidence 9998764
No 23
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=99.71 E-value=4e-18 Score=181.90 Aligned_cols=79 Identities=14% Similarity=0.183 Sum_probs=73.8
Q ss_pred hhhhHHHHHHHHHHHhhccc-CCcEEeeccccceeccccccccccCC-CcceeeeEEEecccC---CccccchHHHHHHH
Q 011332 167 DYLSPKYLNRTLPELARVSV-DGVVIFAGYPGQHRAKVSELSKFGRP-AKLRSSTWWIRYFLQ---NSLEENEVAAKKFD 241 (488)
Q Consensus 167 Dyl~~~YLn~~L~ai~ra~~-dGv~V~~GY~~WSl~Dn~~~fEW~~G-yk~RfGl~~VDf~~~---~~~RtpK~Sak~f~ 241 (488)
|..++.||.+||.++.+|++ |||+|+ ||++|||||| |||..| |++||||++|||.++ +.+|+||+|++||+
T Consensus 392 D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~-GY~~WSl~Dn---fEw~~G~y~~RfGl~~VD~~~~~~~~~~R~pK~S~~wy~ 467 (477)
T PRK15014 392 DDYRIDYLRAHIEEMKKAVTYDGVDLM-GYTPWGCIDC---VSFTTGQYSKRYGFIYVNKHDDGTGDMSRSRKKSFNWYK 467 (477)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEE-EEeeccchhh---hcccCCCccCccceEEECCCCCCCcccceecccHHHHHH
Confidence 66789999999999999995 999999 9999999999 999999 999999999999987 56899999999999
Q ss_pred HhhhccCC
Q 011332 242 QASVKRSY 249 (488)
Q Consensus 242 ~vi~~~~y 249 (488)
++|++++.
T Consensus 468 ~ii~~ng~ 475 (477)
T PRK15014 468 EVIASNGE 475 (477)
T ss_pred HHHHhcCC
Confidence 99987653
No 24
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=99.71 E-value=4.9e-18 Score=181.20 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=74.6
Q ss_pred hhhhHHHHHHHHHHHhhccc-CCcEEeeccccceeccccccccccCC-CcceeeeEEEecccC---CccccchHHHHHHH
Q 011332 167 DYLSPKYLNRTLPELARVSV-DGVVIFAGYPGQHRAKVSELSKFGRP-AKLRSSTWWIRYFLQ---NSLEENEVAAKKFD 241 (488)
Q Consensus 167 Dyl~~~YLn~~L~ai~ra~~-dGv~V~~GY~~WSl~Dn~~~fEW~~G-yk~RfGl~~VDf~~~---~~~RtpK~Sak~f~ 241 (488)
|..++.||.+||.++.+|++ |||+|+ ||++|||||| |||..| |++||||++|||.++ +++|+||+|++||+
T Consensus 392 D~~Ri~yl~~hl~~~~~Ai~~dGv~v~-GY~~WSl~Dn---~EW~~G~y~~RfGl~~VD~~~~~~~~~~R~pK~S~~wy~ 467 (478)
T PRK09593 392 DDYRIDYLAAHIKAMRDAINEDGVELL-GYTTWGCIDL---VSAGTGEMKKRYGFIYVDRDNEGKGTLKRSKKKSFDWYK 467 (478)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEE-EEeeccchHh---hcccCCCccCeeceEEECCCCCCCcccceecccHHHHHH
Confidence 66789999999999999995 999999 9999999999 999999 999999999999976 67899999999999
Q ss_pred HhhhccCCC
Q 011332 242 QASVKRSYK 250 (488)
Q Consensus 242 ~vi~~~~yp 250 (488)
++|++++.+
T Consensus 468 ~ii~~~~~~ 476 (478)
T PRK09593 468 KVIASNGED 476 (478)
T ss_pred HHHHhCCcC
Confidence 999887653
No 25
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=4.5e-17 Score=172.33 Aligned_cols=77 Identities=16% Similarity=0.141 Sum_probs=73.7
Q ss_pred hhhhHHHHHHHHHHHhhcccCCcEEeeccccceeccccccccccCCCcceeeeEEEecccCCccccchHHHHHHHHhhhc
Q 011332 167 DYLSPKYLNRTLPELARVSVDGVVIFAGYPGQHRAKVSELSKFGRPAKLRSSTWWIRYFLQNSLEENEVAAKKFDQASVK 246 (488)
Q Consensus 167 Dyl~~~YLn~~L~ai~ra~~dGv~V~~GY~~WSl~Dn~~~fEW~~Gyk~RfGl~~VDf~~~~~~RtpK~Sak~f~~vi~~ 246 (488)
|.++++||.+||.+|++|++|||+|+ ||+.|++||| ++|..||++|||+++||+.++ ..|++|+|+.||+++|++
T Consensus 378 DdyRI~Yl~~Hl~~v~~AI~dGv~v~-GY~~Ws~iD~---~sw~~gy~kRYGli~VD~~~~-~~R~~KkS~~WyK~vi~s 452 (460)
T COG2723 378 DDYRIDYLKEHLKAVKKAIEDGVDVR-GYFAWSLIDN---YSWANGYKKRYGLVYVDYDTD-LERTPKKSFYWYKEVIES 452 (460)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCcc-cceecccccc---cchhhccccccccEEEccccc-ceeeecCceeeeHHHHhc
Confidence 56689999999999999999999999 9999999999 999999999999999999986 579999999999999998
Q ss_pred cC
Q 011332 247 RS 248 (488)
Q Consensus 247 ~~ 248 (488)
|+
T Consensus 453 ng 454 (460)
T COG2723 453 NG 454 (460)
T ss_pred CC
Confidence 87
No 26
>TIGR03356 BGL beta-galactosidase.
Probab=99.60 E-value=3e-16 Score=165.20 Aligned_cols=68 Identities=24% Similarity=0.172 Sum_probs=64.6
Q ss_pred hhhhHHHHHHHHHHHhhcccCCcEEeeccccceeccccccccccCCCcceeeeEEEecccCCccccchHHHHHH
Q 011332 167 DYLSPKYLNRTLPELARVSVDGVVIFAGYPGQHRAKVSELSKFGRPAKLRSSTWWIRYFLQNSLEENEVAAKKF 240 (488)
Q Consensus 167 Dyl~~~YLn~~L~ai~ra~~dGv~V~~GY~~WSl~Dn~~~fEW~~Gyk~RfGl~~VDf~~~~~~RtpK~Sak~f 240 (488)
|..++.||.++|.++++|++|||+|+ ||++||+||| |||..||++||||++|||.++ +|+||+|++||
T Consensus 360 D~~Ri~yl~~hl~~~~~Ai~dGv~v~-GY~~Wsl~Dn---~ew~~gy~~rfGl~~VD~~~~--~R~~K~S~~wy 427 (427)
T TIGR03356 360 DPERIAYLRDHLAALARAIEEGVDVR-GYFVWSLLDN---FEWAEGYSKRFGLVHVDYETQ--KRTPKDSAKWY 427 (427)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCEE-EEEecccccc---cchhcccccccceEEECCCCC--cccccceeeeC
Confidence 67789999999999999999999999 9999999999 999999999999999999875 69999999986
No 27
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=98.46 E-value=1.1e-07 Score=98.33 Aligned_cols=74 Identities=24% Similarity=0.505 Sum_probs=60.9
Q ss_pred ccChHHHHHHHHcCCCeEee-eccccccccCCCCCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCcccccccCCCc
Q 011332 316 HKYKEDVKLMAKTGLDAYRF-SISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWI 393 (488)
Q Consensus 316 ~rykeDI~LmkelGvnayRF-SIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~DlPqwL~dkyGGWl 393 (488)
..+++|+++|+++|+|..|+ .++|++|+|+ +|.+| +..++++|+.+.++||++++.+.+...|.||.++|+..+
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~-eG~yd---F~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~ 84 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPE-EGQYD---FSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEIL 84 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SB-TTB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCC-CCeee---cHHHHHHHHHHHhccCeEEEEecccccccchhhhccccc
Confidence 57999999999999999996 5799999999 79998 788999999999999999999999999999988776544
No 28
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=97.76 E-value=5e-05 Score=73.18 Aligned_cols=67 Identities=19% Similarity=0.365 Sum_probs=58.8
Q ss_pred cChHHHHHHHHcCCCeEeeeccccccc-cCCCCCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCccc
Q 011332 317 KYKEDVKLMAKTGLDAYRFSISWSRLI-PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQAL 385 (488)
Q Consensus 317 rykeDI~LmkelGvnayRFSIsWsRI~-P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~DlPqwL 385 (488)
..++|++.|+++|+|+.|+-|.|..++ |...+.++...++.++++|+.+.++||.++|++|+. |.|.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~ 89 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWA 89 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCS
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--cccc
Confidence 678999999999999999999998888 443346899999999999999999999999999987 6664
No 29
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.62 E-value=5.8e-05 Score=73.09 Aligned_cols=136 Identities=22% Similarity=0.323 Sum_probs=105.5
Q ss_pred ccceeEeCCchhHHHhhhhccccccccCCCccccccchhhhhhhhhhcc-eeeccccCCCC-CcCCCCceeEEeccchhh
Q 011332 92 MLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRKGI-VRVADIKFPLP-YRAKSFSLVIVSDAVDYL 169 (488)
Q Consensus 92 ~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~g~-~~~~d~~~~~~-~r~~sfs~~~vsd~~Dyl 169 (488)
-.+||.+|-......+.|.++.+++++|||- -+.+..+-|+||+ |--.|+.-.|+ |--+||..||.|.++..+
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~k~v~g~GvEi-----d~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~ 88 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDEKQVDGYGVEI-----DPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV 88 (193)
T ss_pred CCEEEecCCCchHHHHHHHHhcCCeEEEEec-----CHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH
Confidence 4799999999999999999999999999872 2346778899999 99999999997 999999999999998886
Q ss_pred hHHHHHHHHHHHhhcccCCcEEeecccccee----c-----cc--cccccccCCCcceeeeEEEecccCCccccchHHHH
Q 011332 170 SPKYLNRTLPELARVSVDGVVIFAGYPGQHR----A-----KV--SELSKFGRPAKLRSSTWWIRYFLQNSLEENEVAAK 238 (488)
Q Consensus 170 ~~~YLn~~L~ai~ra~~dGv~V~~GY~~WSl----~-----Dn--~~~fEW~~Gyk~RfGl~~VDf~~~~~~RtpK~Sak 238 (488)
.+-.++|.++.|+-.++++.|+-+-.|.. + =. .--++| |+||+ .-=-+.+
T Consensus 89 --~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~W--------------YdTPN---ih~~Ti~ 149 (193)
T PF07021_consen 89 --RRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEW--------------YDTPN---IHLCTIK 149 (193)
T ss_pred --hHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcc--------------cCCCC---cccccHH
Confidence 56788999999999999998865555541 1 00 001344 55654 2245677
Q ss_pred HHHHhhhccCCCC
Q 011332 239 KFDQASVKRSYKP 251 (488)
Q Consensus 239 ~f~~vi~~~~ypp 251 (488)
=|+.++++.++.-
T Consensus 150 DFe~lc~~~~i~I 162 (193)
T PF07021_consen 150 DFEDLCRELGIRI 162 (193)
T ss_pred HHHHHHHHCCCEE
Confidence 7888887776654
No 30
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.15 E-value=0.00041 Score=77.96 Aligned_cols=74 Identities=16% Similarity=0.371 Sum_probs=64.8
Q ss_pred ccChHHHHHHHHcCCCeEeeec-cccccccCCCCCCChhHHHHHHHH-HHHHHHCCCcceEee-ccCCCCcccccccCCC
Q 011332 316 HKYKEDVKLMAKTGLDAYRFSI-SWSRLIPNGRGPVNPKGLQYYNNL-INELISYGIQPHVTL-HHSDLPQALEDEYGGW 392 (488)
Q Consensus 316 ~rykeDI~LmkelGvnayRFSI-sWsRI~P~G~G~vN~egv~~Y~~l-Id~L~~~GIeP~VTL-~H~DlPqwL~dkyGGW 392 (488)
.-|++|++.||++|+|+.|.++ +|++++|+ .|.+|- .+.+.. ++.+.+.|+..++.. ....-|.|+.++|.-|
T Consensus 30 ~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~-eG~fdf---~~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~Pei 105 (673)
T COG1874 30 ETWMDDLRKMKALGLNTVRIGYFAWNLHEPE-EGKFDF---TWLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEI 105 (673)
T ss_pred HHHHHHHHHHHHhCCCeeEeeeEEeeccCcc-ccccCc---ccchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhh
Confidence 4588999999999999999966 99999999 789984 477777 999999999999998 8899999998877555
Q ss_pred c
Q 011332 393 I 393 (488)
Q Consensus 393 l 393 (488)
+
T Consensus 106 L 106 (673)
T COG1874 106 L 106 (673)
T ss_pred e
Confidence 5
No 31
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=94.34 E-value=0.036 Score=54.78 Aligned_cols=82 Identities=17% Similarity=0.262 Sum_probs=62.9
Q ss_pred ccccccccCCCCCCChhHHHHHHHHHHHHHHCCCc--ceEeeccCCCCcccccccCCCccceeeeeCCccccChhHHHHH
Q 011332 337 ISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQ--PHVTLHHSDLPQALEDEYGGWINRMIVVANPLVYGDYPKIMKQ 414 (488)
Q Consensus 337 IsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIe--P~VTL~H~DlPqwL~dkyGGWln~~iv~~~Pi~fgdYp~~m~~ 414 (488)
+.|.+++|+ .|.+| .+-.+.+++.++++||+ ..+.++|...|.|+... + .++... .+.+|-+.+.+
T Consensus 1 ~kW~~~ep~-~G~~n---~~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~--~--~~~~~~----~~~~~i~~v~~ 68 (254)
T smart00633 1 MKWDSTEPS-RGQFN---FSGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL--S--KETLLA----RLENHIKTVVG 68 (254)
T ss_pred CCcccccCC-CCccC---hHHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC--C--HHHHHH----HHHHHHHHHHH
Confidence 369999998 68898 56677799999999999 56677888999998642 2 222211 46799999999
Q ss_pred hhCCCCCccchhhhhh
Q 011332 415 NAGSRLPAFTDHESQQ 430 (488)
Q Consensus 415 ~~GdRLP~FT~~E~~~ 430 (488)
++++++..|..-++..
T Consensus 69 ry~g~i~~wdV~NE~~ 84 (254)
T smart00633 69 RYKGKIYAWDVVNEAL 84 (254)
T ss_pred HhCCcceEEEEeeecc
Confidence 9999999998844433
No 32
>PLN02161 beta-amylase
Probab=92.09 E-value=0.29 Score=53.88 Aligned_cols=73 Identities=18% Similarity=0.308 Sum_probs=62.2
Q ss_pred ccccccChHHHHHHHHcCCCeEeeeccccccccCCCCCCChhHHHHHHHHHHHHHHCCCcceEeec-cC-----------
Q 011332 312 CDEYHKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-HS----------- 379 (488)
Q Consensus 312 ~D~Y~rykeDI~LmkelGvnayRFSIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~-H~----------- 379 (488)
.......+.+++-+|.+||+..-.-+=|--+++.+++.+| +..|+++++..++.|++..+.|. |-
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~I 189 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFK---WSLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGGI 189 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccCc
Confidence 3556667889999999999999999999999999889999 78899999999999988666663 42
Q ss_pred CCCccccc
Q 011332 380 DLPQALED 387 (488)
Q Consensus 380 DlPqwL~d 387 (488)
-||+|+.+
T Consensus 190 pLP~WV~~ 197 (531)
T PLN02161 190 SLPLWIRE 197 (531)
T ss_pred cCCHHHHh
Confidence 39999874
No 33
>PLN02803 beta-amylase
Probab=91.91 E-value=0.32 Score=53.87 Aligned_cols=69 Identities=16% Similarity=0.310 Sum_probs=59.5
Q ss_pred ccChHHHHHHHHcCCCeEeeeccccccccCCCCCCChhHHHHHHHHHHHHHHCCCcceEeec-c-----------CCCCc
Q 011332 316 HKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------SDLPQ 383 (488)
Q Consensus 316 ~rykeDI~LmkelGvnayRFSIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~-H-----------~DlPq 383 (488)
...+.+++-+|.+||+..-.-+=|--+++.|++.+| +..|+++++..++.|++..+.|. | .-||+
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~ 183 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYN---WEGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPP 183 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 346779999999999999999999999999889999 78899999999999988666663 4 24999
Q ss_pred cccc
Q 011332 384 ALED 387 (488)
Q Consensus 384 wL~d 387 (488)
|+.+
T Consensus 184 WV~e 187 (548)
T PLN02803 184 WVLE 187 (548)
T ss_pred HHHH
Confidence 9864
No 34
>PLN02801 beta-amylase
Probab=91.50 E-value=0.39 Score=52.89 Aligned_cols=69 Identities=19% Similarity=0.421 Sum_probs=59.4
Q ss_pred ccChHHHHHHHHcCCCeEeeeccccccccCCCCCCChhHHHHHHHHHHHHHHCCCcceEeec-c-----------CCCCc
Q 011332 316 HKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------SDLPQ 383 (488)
Q Consensus 316 ~rykeDI~LmkelGvnayRFSIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~-H-----------~DlPq 383 (488)
...+..+..+|.+||+..-.-+=|--++..+++.+| +..|+++++.++++|++..+.|. | .-||+
T Consensus 37 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~ 113 (517)
T PLN02801 37 EGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYD---WSAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPIPQ 113 (517)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 347888999999999999999999999999889999 78899999999999987665553 3 35999
Q ss_pred cccc
Q 011332 384 ALED 387 (488)
Q Consensus 384 wL~d 387 (488)
|+.+
T Consensus 114 WV~~ 117 (517)
T PLN02801 114 WVRD 117 (517)
T ss_pred HHHH
Confidence 9875
No 35
>PLN00197 beta-amylase; Provisional
Probab=91.17 E-value=0.45 Score=52.89 Aligned_cols=68 Identities=18% Similarity=0.361 Sum_probs=59.4
Q ss_pred cChHHHHHHHHcCCCeEeeeccccccccCCCCCCChhHHHHHHHHHHHHHHCCCcceEeec-c-----------CCCCcc
Q 011332 317 KYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------SDLPQA 384 (488)
Q Consensus 317 rykeDI~LmkelGvnayRFSIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~-H-----------~DlPqw 384 (488)
..+.++.-+|.+||+..-.-+=|--+++.+++.+| +..|+++++..++.|++..+.|. | .-||+|
T Consensus 128 ~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~Yd---WsgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP~W 204 (573)
T PLN00197 128 AMKASLQALKSAGVEGIMMDVWWGLVERESPGVYN---WGGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLPKW 204 (573)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHH
Confidence 47889999999999999999999999999899999 78899999999999988666663 4 259999
Q ss_pred ccc
Q 011332 385 LED 387 (488)
Q Consensus 385 L~d 387 (488)
+.+
T Consensus 205 V~~ 207 (573)
T PLN00197 205 VVE 207 (573)
T ss_pred HHH
Confidence 864
No 36
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=91.16 E-value=0.4 Score=38.13 Aligned_cols=88 Identities=23% Similarity=0.308 Sum_probs=64.0
Q ss_pred eEeCCchhHHHhhhhccccccccCCCccccccchhhhhhhhhhcc--eeeccccCCCCCcCCCCceeEEeccchhhhHHH
Q 011332 96 LHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRKGI--VRVADIKFPLPYRAKSFSLVIVSDAVDYLSPKY 173 (488)
Q Consensus 96 l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~g~--~~~~d~~~~~~~r~~sfs~~~vsd~~Dyl~~~Y 173 (488)
|-+|..+......|.+....+.+|+++..- .-..|+...++.- ++.+|+. .||+...||..|+....+.++ .-
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~--~~~~~~~~~~~~~~~~~~~d~~-~l~~~~~sfD~v~~~~~~~~~--~~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEE--MLEQARKRLKNEGVSFRQGDAE-DLPFPDNSFDVVFSNSVLHHL--ED 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HH--HHHHHHHHTTTSTEEEEESBTT-SSSS-TT-EEEEEEESHGGGS--SH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHH--HHHHHHhcccccCchheeehHH-hCccccccccccccccceeec--cC
Confidence 567888888888888887888999988652 3445555555443 7888865 459999999999999999887 66
Q ss_pred HHHHHHHHhhcccCC
Q 011332 174 LNRTLPELARVSVDG 188 (488)
Q Consensus 174 Ln~~L~ai~ra~~dG 188 (488)
..+.+.++.|+...|
T Consensus 76 ~~~~l~e~~rvLk~g 90 (95)
T PF08241_consen 76 PEAALREIYRVLKPG 90 (95)
T ss_dssp HHHHHHHHHHHEEEE
T ss_pred HHHHHHHHHHHcCcC
Confidence 677888888887764
No 37
>PLN02905 beta-amylase
Probab=90.99 E-value=0.46 Score=53.57 Aligned_cols=73 Identities=12% Similarity=0.269 Sum_probs=62.4
Q ss_pred ccccccChHHHHHHHHcCCCeEeeeccccccccCCCCCCChhHHHHHHHHHHHHHHCCCcceEeec-c-----------C
Q 011332 312 CDEYHKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------S 379 (488)
Q Consensus 312 ~D~Y~rykeDI~LmkelGvnayRFSIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~-H-----------~ 379 (488)
-......+..+..+|.+||+..-.-+=|--+++.+++.+| +..|+++++..++.|++..+.|. | .
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~Yd---WsgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~I 358 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYN---WNGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCI 358 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccc
Confidence 3556668889999999999999999999999999889999 78899999999999988666663 4 2
Q ss_pred CCCccccc
Q 011332 380 DLPQALED 387 (488)
Q Consensus 380 DlPqwL~d 387 (488)
-||+|+.+
T Consensus 359 PLP~WV~e 366 (702)
T PLN02905 359 PLPHWVAE 366 (702)
T ss_pred cCCHHHHH
Confidence 59999864
No 38
>PLN02705 beta-amylase
Probab=90.53 E-value=0.6 Score=52.56 Aligned_cols=71 Identities=15% Similarity=0.235 Sum_probs=60.6
Q ss_pred ccccChHHHHHHHHcCCCeEeeeccccccccCCCCCCChhHHHHHHHHHHHHHHCCCcceEeec-c-----------CCC
Q 011332 314 EYHKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------SDL 381 (488)
Q Consensus 314 ~Y~rykeDI~LmkelGvnayRFSIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~-H-----------~Dl 381 (488)
.-...+..+.-+|.+||+..-.-+=|--++..+++.+| +..|.++++.+++.|++..+.|. | .-|
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPL 342 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYV---WSGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISL 342 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccC
Confidence 34557889999999999999999999999999889999 78899999999999988666553 4 259
Q ss_pred Cccccc
Q 011332 382 PQALED 387 (488)
Q Consensus 382 PqwL~d 387 (488)
|+|+.+
T Consensus 343 P~WV~e 348 (681)
T PLN02705 343 PQWVLE 348 (681)
T ss_pred CHHHHH
Confidence 999875
No 39
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=90.18 E-value=0.25 Score=53.03 Aligned_cols=70 Identities=16% Similarity=0.357 Sum_probs=55.9
Q ss_pred cccChHHHHHHHHcCCCeEeeeccccccccCCCCCCChhHHHHHHHHHHHHHHCCCcceEee-cc-----------CCCC
Q 011332 315 YHKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-HH-----------SDLP 382 (488)
Q Consensus 315 Y~rykeDI~LmkelGvnayRFSIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL-~H-----------~DlP 382 (488)
+...+.+++.+|.+||+..-.-+=|.-+++.|++.+| +..|+++++.+++.|++..+.| +| .-||
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~yd---Ws~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP 91 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYD---WSGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLP 91 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCC
Confidence 4578899999999999999999999999999888998 7889999999999998877766 34 3589
Q ss_pred ccccc
Q 011332 383 QALED 387 (488)
Q Consensus 383 qwL~d 387 (488)
+|+.+
T Consensus 92 ~Wv~~ 96 (402)
T PF01373_consen 92 SWVWE 96 (402)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99863
No 40
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=87.71 E-value=1.2 Score=47.32 Aligned_cols=74 Identities=19% Similarity=0.169 Sum_probs=56.1
Q ss_pred cccccccC-----hHHHHHHHHcCCCeEeeeccccccccCC--CCCCC-hhHHHHHHHHHHHHHHCCCcceEeeccCCCC
Q 011332 311 ACDEYHKY-----KEDVKLMAKTGLDAYRFSISWSRLIPNG--RGPVN-PKGLQYYNNLINELISYGIQPHVTLHHSDLP 382 (488)
Q Consensus 311 a~D~Y~ry-----keDI~LmkelGvnayRFSIsWsRI~P~G--~G~vN-~egv~~Y~~lId~L~~~GIeP~VTL~H~DlP 382 (488)
..-....| ++|+..|++.|+|+.|.-|.|-.+.+.+ ...+. ..-+++-+++|+...+.||.+++.||+..-+
T Consensus 63 ~~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~ 142 (407)
T COG2730 63 QGLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGG 142 (407)
T ss_pred cccchhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCC
Confidence 33455667 8999999999999999999866655542 22232 3445588999999999999999999988744
Q ss_pred cc
Q 011332 383 QA 384 (488)
Q Consensus 383 qw 384 (488)
+-
T Consensus 143 ~~ 144 (407)
T COG2730 143 NN 144 (407)
T ss_pred CC
Confidence 43
No 41
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=87.51 E-value=0.59 Score=48.36 Aligned_cols=75 Identities=15% Similarity=0.235 Sum_probs=52.6
Q ss_pred ccChHHHHHHHHcCCCeEeeeccccccccCCCCCCChhHHHHHHHHHHHHHHCCCcceEeec-----cC---CCCccccc
Q 011332 316 HKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-----HS---DLPQALED 387 (488)
Q Consensus 316 ~rykeDI~LmkelGvnayRFSIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~-----H~---DlPqwL~d 387 (488)
..|++-++.||++|+|+.-+=+.|.-.+|. +|.+|-+|..=.+.+|+.+.++|+-.++-.= =| .+|.||..
T Consensus 24 ~~W~~~l~k~ka~G~n~v~~yv~W~~he~~-~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~ 102 (319)
T PF01301_consen 24 EYWRDRLQKMKAAGLNTVSTYVPWNLHEPE-EGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLR 102 (319)
T ss_dssp GGHHHHHHHHHHTT-SEEEEE--HHHHSSB-TTB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGG
T ss_pred hHHHHHHHHHHhCCcceEEEeccccccCCC-CCcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhc
Confidence 347888999999999999999999999999 7999999887788999999999998554331 12 38999987
Q ss_pred ccCC
Q 011332 388 EYGG 391 (488)
Q Consensus 388 kyGG 391 (488)
+.++
T Consensus 103 ~~~~ 106 (319)
T PF01301_consen 103 KPDI 106 (319)
T ss_dssp STTS
T ss_pred cccc
Confidence 6433
No 42
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=87.13 E-value=1 Score=43.42 Aligned_cols=99 Identities=19% Similarity=0.263 Sum_probs=70.5
Q ss_pred cceeEeCCchhHHHhhhhcc-ccccccCCCccccccchhhhhhhhhhcceeeccccCCCCCcCCCCceeEEeccchhhhH
Q 011332 93 LKVLHVGPETCSVVSKLLKE-EDTEAWGVEPYDLDDADANCRSLVRKGIVRVADIKFPLPYRAKSFSLVIVSDAVDYLSP 171 (488)
Q Consensus 93 ~~~l~~~p~~~~~~~~~~~~-~~~~~~g~~p~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~r~~sfs~~~vsd~~Dyl~~ 171 (488)
.+||-||-.|-.....|.+. ...+..|||+.+ ++-..|+.-..+--+..+|+.- |+...+|.+|+....+.++.+
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~--~~l~~A~~~~~~~~~~~~d~~~--~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPFKHIYGVEINE--YAVEKAKAYLPNINIIQGSLFD--PFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCCCeEEEEECCH--HHHHHHHhhCCCCcEEEeeccC--CCCCCCEEEEEECChhhhCCH
Confidence 57999999999888888765 457788887653 1222333322333456778765 788899999998888888888
Q ss_pred HHHHHHHHHHhhcccCCcEEeeccc
Q 011332 172 KYLNRTLPELARVSVDGVVIFAGYP 196 (488)
Q Consensus 172 ~YLn~~L~ai~ra~~dGv~V~~GY~ 196 (488)
..+.+.+..+.|+.. +..+...|.
T Consensus 121 ~~~~~~l~el~r~~~-~~v~i~e~~ 144 (204)
T TIGR03587 121 DNLPTAYRELYRCSN-RYILIAEYY 144 (204)
T ss_pred HHHHHHHHHHHhhcC-cEEEEEEee
Confidence 999999999988873 344442444
No 43
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=83.04 E-value=3 Score=39.21 Aligned_cols=100 Identities=25% Similarity=0.387 Sum_probs=62.2
Q ss_pred cceeEeCCchhHHHhhhhccccccccCCCccccccchhhhhhhhhhcc-eeeccccCCC-CCcCCCCceeEEeccchhhh
Q 011332 93 LKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRKGI-VRVADIKFPL-PYRAKSFSLVIVSDAVDYLS 170 (488)
Q Consensus 93 ~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~g~-~~~~d~~~~~-~~r~~sfs~~~vsd~~Dyl~ 170 (488)
.+||.||..+..+...|.+.-...++|||+-+ +.-..|+ ++|+ +..+|+.-.+ |+...+|..++....+.++.
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~--~~i~~a~---~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQVRGYGIEIDQ--DGVLACV---ARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccCCcEEEEeCCH--HHHHHHH---HcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence 37999999999887766655556678887642 1111121 2332 3457775445 47778999999988877762
Q ss_pred HHHHHHHHHHHhhcccCCcEEeeccccce
Q 011332 171 PKYLNRTLPELARVSVDGVVIFAGYPGQH 199 (488)
Q Consensus 171 ~~YLn~~L~ai~ra~~dGv~V~~GY~~WS 199 (488)
...++|+++.|+...++..+..+..|+
T Consensus 90 --d~~~~l~e~~r~~~~~ii~~p~~~~~~ 116 (194)
T TIGR02081 90 --NPEEILDEMLRVGRHAIVSFPNFGYWR 116 (194)
T ss_pred --CHHHHHHHHHHhCCeEEEEcCChhHHH
Confidence 255677777776555544433344443
No 44
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=81.07 E-value=3.8 Score=40.90 Aligned_cols=119 Identities=13% Similarity=0.131 Sum_probs=65.6
Q ss_pred cccchHhhHhhhhHHHHHhcccccceeEeCCchhHHHhhhhccccccccCCCccc--cccchhhhhhhhhhcce--eecc
Q 011332 70 VVSCTLEVQRALPVLKKAYGDSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYD--LDDADANCRSLVRKGIV--RVAD 145 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~--~~~~~~~~~~~~~~g~~--~~~d 145 (488)
++-=+.++..+.-+|++.-=+.-.+||.||..+=.....|.+.-..+..||++-+ ++.+..+++. ...| ..+|
T Consensus 31 ~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D 107 (263)
T PTZ00098 31 DYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEAND 107 (263)
T ss_pred CCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECC
Confidence 3334444444444444432234468999999876654444433334666666532 2223333321 1223 3467
Q ss_pred ccCCCCCcCCCCceeEEeccchhhhHHHHHHHHHHHhhcccCCcEEe
Q 011332 146 IKFPLPYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARVSVDGVVIF 192 (488)
Q Consensus 146 ~~~~~~~r~~sfs~~~vsd~~Dyl~~~YLn~~L~ai~ra~~dGv~V~ 192 (488)
+. .+|+...+|.+++..+.+-+....-..++|..+.++...|-.+.
T Consensus 108 ~~-~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lv 153 (263)
T PTZ00098 108 IL-KKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILL 153 (263)
T ss_pred cc-cCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 64 57787889999998777655433345566666766667653333
No 45
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=78.72 E-value=2.4 Score=37.21 Aligned_cols=89 Identities=27% Similarity=0.311 Sum_probs=60.5
Q ss_pred ccccceeEeCCchhHHHhhhhccccccccCCCccccccchhhhhhhhhhcceeeccccC---CCCCcCCCCceeEEeccc
Q 011332 90 DSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRKGIVRVADIKF---PLPYRAKSFSLVIVSDAV 166 (488)
Q Consensus 90 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~g~~~~~d~~~---~~~~r~~sfs~~~vsd~~ 166 (488)
+.-.+||-||+.+...+..| ++...+..|++|.+-.-. + ..+....| -.+....+|.+++..+.+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l-~~~~~~~~g~D~~~~~~~---------~--~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRAL-AKRGFEVTGVDISPQMIE---------K--RNVVFDNFDAQDPPFPDGSFDLIICNDVL 88 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHH-HHTTSEEEEEESSHHHHH---------H--TTSEEEEEECHTHHCHSSSEEEEEEESSG
T ss_pred CCCCEEEEEcCCCCHHHHHH-HHhCCEEEEEECCHHHHh---------h--hhhhhhhhhhhhhhccccchhhHhhHHHH
Confidence 55679999999999655555 677778888888752211 1 21222222 344577899999999999
Q ss_pred hhhhHHHHHHHHHHHhhcccC-CcEEe
Q 011332 167 DYLSPKYLNRTLPELARVSVD-GVVIF 192 (488)
Q Consensus 167 Dyl~~~YLn~~L~ai~ra~~d-Gv~V~ 192 (488)
.|+. -..++|..|.+.... |.-++
T Consensus 89 ~~~~--d~~~~l~~l~~~LkpgG~l~~ 113 (161)
T PF13489_consen 89 EHLP--DPEEFLKELSRLLKPGGYLVI 113 (161)
T ss_dssp GGSS--HHHHHHHHHHHCEEEEEEEEE
T ss_pred hhcc--cHHHHHHHHHHhcCCCCEEEE
Confidence 9984 377888888777765 44444
No 46
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=71.73 E-value=23 Score=34.29 Aligned_cols=114 Identities=15% Similarity=0.203 Sum_probs=69.6
Q ss_pred hHhhHhhhhHHHHHhcccccceeEeCCchhHHHhhhhc---cccccccCCCccccccchhhhhhhhhh-c-----ceeec
Q 011332 74 TLEVQRALPVLKKAYGDSMLKVLHVGPETCSVVSKLLK---EEDTEAWGVEPYDLDDADANCRSLVRK-G-----IVRVA 144 (488)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~---~~~~~~~g~~p~~~~~~~~~~~~~~~~-g-----~~~~~ 144 (488)
-.++...|=-|++.+...-.+||.+|-.+=.....|++ ....+..||++.. +.-..|+..+++ + -+...
T Consensus 36 y~~~~~~~~~l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~--~ml~~a~~~~~~~~~~~~v~~~~~ 113 (239)
T TIGR00740 36 YSNIITAIGMLAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQ--PMVERCRQHIAAYHSEIPVEILCN 113 (239)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEEEC
Confidence 34555555556666766667899999887666555554 3467788888753 233334443332 1 23455
Q ss_pred cccCCCCCcCCCCceeEEeccchhhhHHHHHHHHHHHhhcccCCcEEe
Q 011332 145 DIKFPLPYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARVSVDGVVIF 192 (488)
Q Consensus 145 d~~~~~~~r~~sfs~~~vsd~~Dyl~~~YLn~~L~ai~ra~~dGv~V~ 192 (488)
|+. .+| .++|+.++....+.|+.+.-..+.|+.+.|+...|-.+.
T Consensus 114 d~~-~~~--~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~ 158 (239)
T TIGR00740 114 DIR-HVE--IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLV 158 (239)
T ss_pred Chh-hCC--CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEE
Confidence 663 233 246888777777777765556677777777777654444
No 47
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=71.46 E-value=4 Score=33.70 Aligned_cols=91 Identities=24% Similarity=0.303 Sum_probs=48.7
Q ss_pred eEeCCchhHHHhhhhcc-ccccccCCCccc--cccchhhhhhhhhhcc--eeeccccCCCCCcCCCCceeEEeccchhhh
Q 011332 96 LHVGPETCSVVSKLLKE-EDTEAWGVEPYD--LDDADANCRSLVRKGI--VRVADIKFPLPYRAKSFSLVIVSDAVDYLS 170 (488)
Q Consensus 96 l~~~p~~~~~~~~~~~~-~~~~~~g~~p~~--~~~~~~~~~~~~~~g~--~~~~d~~~~~~~r~~sfs~~~vsd~~Dyl~ 170 (488)
|-||+.|......|+++ ...+-.|+++.. |+.+...-+....... +++.+.....+.-..+|.+|+.+..+.++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 67899999988888876 567777877653 4444444444433332 33333333222233799999999999998
Q ss_pred HHHHHHHHHHHhhcccCC
Q 011332 171 PKYLNRTLPELARVSVDG 188 (488)
Q Consensus 171 ~~YLn~~L~ai~ra~~dG 188 (488)
..+.++|..+.++...|
T Consensus 80 -~~~~~~l~~~~~~L~pg 96 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKPG 96 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS
T ss_pred -hhHHHHHHHHHHHcCCC
Confidence 77778888887777766
No 48
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=66.07 E-value=21 Score=33.87 Aligned_cols=108 Identities=17% Similarity=0.197 Sum_probs=67.1
Q ss_pred cchHhhHhhhhHHHHHhcccccceeEeCCchhHHHhhhhccccccccCCCccccccchhhhhhhhhh-cc----eeeccc
Q 011332 72 SCTLEVQRALPVLKKAYGDSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRK-GI----VRVADI 146 (488)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~-g~----~~~~d~ 146 (488)
.-+.++++.++.++ -.+||-+|=.+......|.+. ..+..||++.+ ++-..++.++++ |+ +.++|+
T Consensus 17 ~~~~~l~~~l~~~~------~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~--~~i~~a~~~~~~~~~~~v~~~~~d~ 87 (197)
T PRK11207 17 RTHSEVLEAVKVVK------PGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNP--MSIANLERIKAAENLDNLHTAVVDL 87 (197)
T ss_pred CChHHHHHhcccCC------CCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCH--HHHHHHHHHHHHcCCCcceEEecCh
Confidence 44566777776542 258999998887766666554 55677776542 233345554443 22 345676
Q ss_pred cCCCCCcCCCCceeEEeccchhhhHHHHHHHHHHHhhcccCCcE
Q 011332 147 KFPLPYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARVSVDGVV 190 (488)
Q Consensus 147 ~~~~~~r~~sfs~~~vsd~~Dyl~~~YLn~~L~ai~ra~~dGv~ 190 (488)
. .+|. ..+|.+++.+..+.++.+.-+.+.+..+.++...|-.
T Consensus 88 ~-~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~ 129 (197)
T PRK11207 88 N-NLTF-DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGY 129 (197)
T ss_pred h-hCCc-CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcE
Confidence 4 2343 3679999988777666555566677777776677544
No 49
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=64.15 E-value=22 Score=29.71 Aligned_cols=100 Identities=12% Similarity=0.116 Sum_probs=52.7
Q ss_pred ccceeEeCCchhHHHhhhhcc-ccccccCCCccc--cccchhhhhhhh-hhcceeeccccCCCCCcCCCCceeEEeccch
Q 011332 92 MLKVLHVGPETCSVVSKLLKE-EDTEAWGVEPYD--LDDADANCRSLV-RKGIVRVADIKFPLPYRAKSFSLVIVSDAVD 167 (488)
Q Consensus 92 ~~~~l~~~p~~~~~~~~~~~~-~~~~~~g~~p~~--~~~~~~~~~~~~-~~g~~~~~d~~~~~~~r~~sfs~~~vsd~~D 167 (488)
-.+||-+|..+=.....+++. .+.+.+|+|+-+ ++-+..+++.+- .+=-+...|+...++.-.++|..+++.....
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~ 99 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGG 99 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcch
Confidence 358999999875555556654 247888988743 222333333331 1111223454433555456899998864332
Q ss_pred hhhHHHHHHHHHHHhhcccCCcEEeecc
Q 011332 168 YLSPKYLNRTLPELARVSVDGVVIFAGY 195 (488)
Q Consensus 168 yl~~~YLn~~L~ai~ra~~dGv~V~~GY 195 (488)
- ....+++..+.| ..+|.-+..+|
T Consensus 100 ~-~~~~l~~~~~~L---k~gG~li~~~~ 123 (124)
T TIGR02469 100 L-LQEILEAIWRRL---RPGGRIVLNAI 123 (124)
T ss_pred h-HHHHHHHHHHHc---CCCCEEEEEec
Confidence 2 234444444444 23455554333
No 50
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=63.43 E-value=14 Score=35.04 Aligned_cols=62 Identities=18% Similarity=0.423 Sum_probs=45.3
Q ss_pred ccChHHHHHHHHcCCCeEeeecccccc-----ccCC--CCCCChhHHHHHHHHHHHHHHCCCcceEeeccC
Q 011332 316 HKYKEDVKLMAKTGLDAYRFSISWSRL-----IPNG--RGPVNPKGLQYYNNLINELISYGIQPHVTLHHS 379 (488)
Q Consensus 316 ~rykeDI~LmkelGvnayRFSIsWsRI-----~P~G--~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~ 379 (488)
.+|+++++.|+++|++..= +.|+.. .|.. .+.+.....+....++++.-+.||+.+|.|+..
T Consensus 20 ~~W~~~~~~m~~~GidtlI--lq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLI--LQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred HHHHHHHHHHHHcCCcEEE--EEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC
Confidence 4699999999999999863 224443 1221 012333456788999999999999999999965
No 51
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=61.30 E-value=19 Score=34.99 Aligned_cols=123 Identities=23% Similarity=0.227 Sum_probs=67.0
Q ss_pred hhcccCcccchHhhHhhhh-HHHHHhcc-cccceeEeCCchhHHHhhhhccccccccCCCccccccchhhhhhhhhhcce
Q 011332 64 LSKVEGVVSCTLEVQRALP-VLKKAYGD-SMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRKGIV 141 (488)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~g~~ 141 (488)
+++....+.-.+++|+.+- .|.+.... .-.+||.+|-.|..+...| .+...+..|+++.. +.-..|+.....--+
T Consensus 13 F~~aa~~Y~~~~~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l-~~~~~~v~~~D~s~--~~l~~a~~~~~~~~~ 89 (251)
T PRK10258 13 FGRAAAHYEQHAELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYW-RERGSQVTALDLSP--PMLAQARQKDAADHY 89 (251)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHH-HHcCCeEEEEECCH--HHHHHHHhhCCCCCE
Confidence 3444433333445554332 12233332 3467999999997654444 44456677776532 121222222211134
Q ss_pred eeccccCCCCCcCCCCceeEEeccchhhhHHHHHHHHHHHhhcccCC-cEEe
Q 011332 142 RVADIKFPLPYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARVSVDG-VVIF 192 (488)
Q Consensus 142 ~~~d~~~~~~~r~~sfs~~~vsd~~Dyl~~~YLn~~L~ai~ra~~dG-v~V~ 192 (488)
.++|+.- +|+...+|.+|+.+..+.+. .-+.++|.++.++...| .-++
T Consensus 90 ~~~d~~~-~~~~~~~fD~V~s~~~l~~~--~d~~~~l~~~~~~Lk~gG~l~~ 138 (251)
T PRK10258 90 LAGDIES-LPLATATFDLAWSNLAVQWC--GNLSTALRELYRVVRPGGVVAF 138 (251)
T ss_pred EEcCccc-CcCCCCcEEEEEECchhhhc--CCHHHHHHHHHHHcCCCeEEEE
Confidence 5678743 67878899999876555442 23456777777777765 4443
No 52
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=60.68 E-value=27 Score=34.32 Aligned_cols=118 Identities=13% Similarity=0.198 Sum_probs=70.8
Q ss_pred cccchHhhHhhhhHHHHHhcccccceeEeCCchhHHHhhhhc---cccccccCCCccccccchhhhhhhhhh-cc---e-
Q 011332 70 VVSCTLEVQRALPVLKKAYGDSMLKVLHVGPETCSVVSKLLK---EEDTEAWGVEPYDLDDADANCRSLVRK-GI---V- 141 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~---~~~~~~~g~~p~~~~~~~~~~~~~~~~-g~---~- 141 (488)
..-|-.++++.+-.+-+.+-..-.+||.||-.|-.....|++ ....+..||+|.. +.-..|+..+.+ |. |
T Consensus 35 ~~p~y~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~--~ml~~A~~~~~~~~~~~~v~ 112 (247)
T PRK15451 35 SVPGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSP--AMIERCRRHIDAYKAPTPVD 112 (247)
T ss_pred cCCChHHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCH--HHHHHHHHHHHhcCCCCCeE
Confidence 345566666666555554433446799999988777666654 3567888888743 122233333321 21 2
Q ss_pred -eeccccCCCCCcCCCCceeEEeccchhhhHHHHHHHHHHHhhcccCCcEEe
Q 011332 142 -RVADIKFPLPYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARVSVDGVVIF 192 (488)
Q Consensus 142 -~~~d~~~~~~~r~~sfs~~~vsd~~Dyl~~~YLn~~L~ai~ra~~dGv~V~ 192 (488)
..+|+. .+|. ++|+.++....+.++.+....++++.|.++...|-.+.
T Consensus 113 ~~~~d~~-~~~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~ 161 (247)
T PRK15451 113 VIEGDIR-DIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALV 161 (247)
T ss_pred EEeCChh-hCCC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 334542 2343 45888776677777766666778888888878765544
No 53
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=60.38 E-value=19 Score=34.39 Aligned_cols=92 Identities=18% Similarity=0.208 Sum_probs=61.1
Q ss_pred cceeEeCCchhHHHhhhhccccccccCCCccc--cccchhhhhhhhhhcc-----eeeccccCCCCCcCCCCceeEEecc
Q 011332 93 LKVLHVGPETCSVVSKLLKEEDTEAWGVEPYD--LDDADANCRSLVRKGI-----VRVADIKFPLPYRAKSFSLVIVSDA 165 (488)
Q Consensus 93 ~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~--~~~~~~~~~~~~~~g~-----~~~~d~~~~~~~r~~sfs~~~vsd~ 165 (488)
.+||-+|-.+-.+...|.+. ..+..|||+-+ ++.+. +.+-..+. ..++|+... | ++|..++..+.
T Consensus 57 ~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~---~~~~~~~~~~~i~~~~~d~~~~-~---~~fD~ii~~~~ 128 (219)
T TIGR02021 57 KRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMAR---NRAQGRDVAGNVEFEVNDLLSL-C---GEFDIVVCMDV 128 (219)
T ss_pred CEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHH---HHHHhcCCCCceEEEECChhhC-C---CCcCEEEEhhH
Confidence 57999999998887777754 45778887532 22222 22222332 456777653 4 89999998888
Q ss_pred chhhhHHHHHHHHHHHhhcccCCcEEe
Q 011332 166 VDYLSPKYLNRTLPELARVSVDGVVIF 192 (488)
Q Consensus 166 ~Dyl~~~YLn~~L~ai~ra~~dGv~V~ 192 (488)
+.++.+.-+.+++..+.++...|+.+.
T Consensus 129 l~~~~~~~~~~~l~~i~~~~~~~~~i~ 155 (219)
T TIGR02021 129 LIHYPASDMAKALGHLASLTKERVIFT 155 (219)
T ss_pred HHhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 877756667788888877666554443
No 54
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=59.75 E-value=29 Score=32.81 Aligned_cols=102 Identities=21% Similarity=0.262 Sum_probs=60.3
Q ss_pred hhhhHHHHHhcc-cccceeEeCCchhHHHhhhhccccccccCCCccc--cccchhhhhhhhhhcc-----eeeccccCCC
Q 011332 79 RALPVLKKAYGD-SMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYD--LDDADANCRSLVRKGI-----VRVADIKFPL 150 (488)
Q Consensus 79 ~~~~~~~~~~~~-~~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~--~~~~~~~~~~~~~~g~-----~~~~d~~~~~ 150 (488)
.++..|+. +|. .-.+||-||..+-.....|.+.. .+..|+++-. ++.+..+++ +.|+ ..++| +
T Consensus 51 ~~~~~l~~-~~~~~~~~vLDvGcG~G~~~~~l~~~~-~~v~~~D~s~~~i~~a~~~~~---~~~~~~~i~~~~~d----~ 121 (230)
T PRK07580 51 TVLSWLPA-DGDLTGLRILDAGCGVGSLSIPLARRG-AKVVASDISPQMVEEARERAP---EAGLAGNITFEVGD----L 121 (230)
T ss_pred HHHHHHHh-cCCCCCCEEEEEeCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHH---hcCCccCcEEEEcC----c
Confidence 34444543 222 34689999999988777776543 4455655421 122222222 1222 23455 3
Q ss_pred CCcCCCCceeEEeccchhhhHHHHHHHHHHHhhcccCCc
Q 011332 151 PYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARVSVDGV 189 (488)
Q Consensus 151 ~~r~~sfs~~~vsd~~Dyl~~~YLn~~L~ai~ra~~dGv 189 (488)
+.-..+|.+++..+.+.++...-+.+++..+.+....|+
T Consensus 122 ~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~ 160 (230)
T PRK07580 122 ESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSL 160 (230)
T ss_pred hhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeE
Confidence 344688999999888877666677888888876554443
No 55
>PRK05785 hypothetical protein; Provisional
Probab=58.47 E-value=38 Score=33.15 Aligned_cols=90 Identities=22% Similarity=0.196 Sum_probs=58.6
Q ss_pred ccceeEeCCchhHHHhhhhccccccccCCCccccccchhhhhhhhhhcceeeccccCCCCCcCCCCceeEEeccchhhhH
Q 011332 92 MLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRKGIVRVADIKFPLPYRAKSFSLVIVSDAVDYLSP 171 (488)
Q Consensus 92 ~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~r~~sfs~~~vsd~~Dyl~~ 171 (488)
-.+||-||-.|..+...|.+.-+.+..||++-. +.=..++ +|.-..++|.. .||+...||..++.+..+.+. .
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~--~Ml~~a~---~~~~~~~~d~~-~lp~~d~sfD~v~~~~~l~~~-~ 124 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAE--NMLKMNL---VADDKVVGSFE-ALPFRDKSFDVVMSSFALHAS-D 124 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCH--HHHHHHH---hccceEEechh-hCCCCCCCEEEEEecChhhcc-C
Confidence 468999999999776665544346788887632 0000111 12223345654 579999999999999776543 2
Q ss_pred HHHHHHHHHHhhcccCCc
Q 011332 172 KYLNRTLPELARVSVDGV 189 (488)
Q Consensus 172 ~YLn~~L~ai~ra~~dGv 189 (488)
-+.+.|.++.|+....+
T Consensus 125 -d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 125 -NIEKVIAEFTRVSRKQV 141 (226)
T ss_pred -CHHHHHHHHHHHhcCce
Confidence 24678888888887643
No 56
>PLN03059 beta-galactosidase; Provisional
Probab=58.09 E-value=14 Score=43.54 Aligned_cols=72 Identities=15% Similarity=0.224 Sum_probs=60.4
Q ss_pred ccChHHHHHHHHcCCCeEeeeccccccccCCCCCCChhHHHHHHHHHHHHHHCCCc------ceEeec--cCCCCccccc
Q 011332 316 HKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQ------PHVTLH--HSDLPQALED 387 (488)
Q Consensus 316 ~rykeDI~LmkelGvnayRFSIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIe------P~VTL~--H~DlPqwL~d 387 (488)
..|++=++.||++|+|+.-+=+.|.-.+|. +|.+|-+|..=..+.|+...+.|+- |+|+-. .-.+|.||.+
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~-~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~ 137 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKY 137 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccCCC-CCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhc
Confidence 457788999999999999999999999998 7999999988888999999999965 444432 4568999975
Q ss_pred c
Q 011332 388 E 388 (488)
Q Consensus 388 k 388 (488)
.
T Consensus 138 ~ 138 (840)
T PLN03059 138 V 138 (840)
T ss_pred C
Confidence 3
No 57
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=56.98 E-value=5.9 Score=39.85 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=19.7
Q ss_pred ccccChHHHHHHHHcCCCeEeeec
Q 011332 314 EYHKYKEDVKLMAKTGLDAYRFSI 337 (488)
Q Consensus 314 ~Y~rykeDI~LmkelGvnayRFSI 337 (488)
....++.|+.+||+||+|+.|++.
T Consensus 34 ~~~~~~~d~~l~k~~G~N~iR~~h 57 (298)
T PF02836_consen 34 PDEAMERDLELMKEMGFNAIRTHH 57 (298)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEETT
T ss_pred CHHHHHHHHHHHHhcCcceEEccc
Confidence 457899999999999999999853
No 58
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=55.13 E-value=25 Score=35.90 Aligned_cols=61 Identities=13% Similarity=0.331 Sum_probs=39.5
Q ss_pred ChHHHHHHHHcCCCeEeeec--ccccc--------cc--CCC------CCCChhHHHHHHHHHHHHHHCCCcceEeecc
Q 011332 318 YKEDVKLMAKTGLDAYRFSI--SWSRL--------IP--NGR------GPVNPKGLQYYNNLINELISYGIQPHVTLHH 378 (488)
Q Consensus 318 ykeDI~LmkelGvnayRFSI--sWsRI--------~P--~G~------G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H 378 (488)
++.=++..++-|+|..|+.+ .|-.. .| ..+ ..+|++-+++.+++|+.|.++||+|.+-+.|
T Consensus 32 ~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w 110 (289)
T PF13204_consen 32 WEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW 110 (289)
T ss_dssp HHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS-
T ss_pred HHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE
Confidence 34447788899999999998 55544 11 111 1389999999999999999999999987777
No 59
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=54.54 E-value=12 Score=40.78 Aligned_cols=59 Identities=22% Similarity=0.512 Sum_probs=36.7
Q ss_pred cChHHHHHHH-HcCCCeEeee--c--ccccccc-CCCC--CCChhHHHHHHHHHHHHHHCCCcceEeecc
Q 011332 317 KYKEDVKLMA-KTGLDAYRFS--I--SWSRLIP-NGRG--PVNPKGLQYYNNLINELISYGIQPHVTLHH 378 (488)
Q Consensus 317 rykeDI~Lmk-elGvnayRFS--I--sWsRI~P-~G~G--~vN~egv~~Y~~lId~L~~~GIeP~VTL~H 378 (488)
.|++.+..++ ++|+...||- + +..-..+ ++.| .+| +.+-++++|.|+++||+|+|.|-.
T Consensus 40 ~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Yn---f~~lD~i~D~l~~~g~~P~vel~f 106 (486)
T PF01229_consen 40 DWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYN---FTYLDQILDFLLENGLKPFVELGF 106 (486)
T ss_dssp HHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S
T ss_pred HHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCC---hHHHHHHHHHHHHcCCEEEEEEEe
Confidence 4667776665 9999999974 1 2222222 2222 256 788999999999999999999954
No 60
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=53.27 E-value=34 Score=36.15 Aligned_cols=69 Identities=22% Similarity=0.433 Sum_probs=42.7
Q ss_pred HHHHHHHHcCCCeEeeeccccccccCCCCCCChhHHHHHHHHHHHHHHCCCcceEeeccCC---CCcccccccCCCccc
Q 011332 320 EDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSD---LPQALEDEYGGWINR 395 (488)
Q Consensus 320 eDI~LmkelGvnayRFSIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~D---lPqwL~dkyGGWln~ 395 (488)
+=+++||+.|+|+.|+-+ | +-|...|..| ++.=.++..+.+++|++.++++|-.| =|.- |.+-..|.+.
T Consensus 28 d~~~ilk~~G~N~vRlRv-w--v~P~~~g~~~---~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~-Q~~P~aW~~~ 99 (332)
T PF07745_consen 28 DLFQILKDHGVNAVRLRV-W--VNPYDGGYND---LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGK-QNKPAAWANL 99 (332)
T ss_dssp -HHHHHHHTT--EEEEEE----SS-TTTTTTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB--B--TTCTSS
T ss_pred CHHHHHHhcCCCeEEEEe-c--cCCcccccCC---HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCC-CCCCccCCCC
Confidence 347999999999999977 4 3455324444 66777888899999999999998545 2321 1223577774
No 61
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=51.36 E-value=41 Score=33.58 Aligned_cols=126 Identities=17% Similarity=0.176 Sum_probs=73.9
Q ss_pred hhcccCcccchHhhHhhhhHHHHHhcc------------------------cccceeEeCCchhHHHhhhhcc--ccccc
Q 011332 64 LSKVEGVVSCTLEVQRALPVLKKAYGD------------------------SMLKVLHVGPETCSVVSKLLKE--EDTEA 117 (488)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~l~~~p~~~~~~~~~~~~--~~~~~ 117 (488)
-||-.+-++|+.+|++...-.-+.|-. .-.+||-||=.|-.....|.+. ...+.
T Consensus 22 ~~~~~~~~~~~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V 101 (261)
T PLN02233 22 RSRRRDVVKCANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKV 101 (261)
T ss_pred hhhcCChhhhHHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEE
Confidence 355556778888888776655555532 1135888888887754444432 23578
Q ss_pred cCCCccc--cccchhhhhhhhhh---c-ceeeccccCCCCCcCCCCceeEEeccchhhhHHHHHHHHHHHhhcccCCcEE
Q 011332 118 WGVEPYD--LDDADANCRSLVRK---G-IVRVADIKFPLPYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARVSVDGVVI 191 (488)
Q Consensus 118 ~g~~p~~--~~~~~~~~~~~~~~---g-~~~~~d~~~~~~~r~~sfs~~~vsd~~Dyl~~~YLn~~L~ai~ra~~dGv~V 191 (488)
.||++.+ ++-+..+....-+. . -+..+|+. .||+...||..|+.+..+.+.. -..+.|.++.|+...|-.+
T Consensus 102 ~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~-~lp~~~~sfD~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l 178 (261)
T PLN02233 102 MGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDAT-DLPFDDCYFDAITMGYGLRNVV--DRLKAMQEMYRVLKPGSRV 178 (261)
T ss_pred EEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccc-cCCCCCCCEeEEEEecccccCC--CHHHHHHHHHHHcCcCcEE
Confidence 8888753 12121111100001 1 13456653 5788888999999886655542 2456778888888876444
Q ss_pred e
Q 011332 192 F 192 (488)
Q Consensus 192 ~ 192 (488)
.
T Consensus 179 ~ 179 (261)
T PLN02233 179 S 179 (261)
T ss_pred E
Confidence 3
No 62
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=51.27 E-value=33 Score=26.33 Aligned_cols=94 Identities=21% Similarity=0.223 Sum_probs=51.1
Q ss_pred ceeEeCCchhHHHhhhhccccccccCCCccccccchhhhh-----hhhhhcceeeccccCCCCCcCCCCceeEEeccchh
Q 011332 94 KVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCR-----SLVRKGIVRVADIKFPLPYRAKSFSLVIVSDAVDY 168 (488)
Q Consensus 94 ~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~-----~~~~~g~~~~~d~~~~~~~r~~sfs~~~vsd~~Dy 168 (488)
++|++|..+-.....+++....+.+|+|+-+. +-..++ ....+--+...|+.-..+....+|.+++......+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPV--ALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHH--HHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 47889988877777777645566677664321 111111 11122233445665554446678888888765544
Q ss_pred ---hhHHHHHHHHHHHhhcccCCcEEe
Q 011332 169 ---LSPKYLNRTLPELARVSVDGVVIF 192 (488)
Q Consensus 169 ---l~~~YLn~~L~ai~ra~~dGv~V~ 192 (488)
....+++.....+ ..+|..+.
T Consensus 79 ~~~~~~~~l~~~~~~l---~~~g~~~~ 102 (107)
T cd02440 79 LVEDLARFLEEARRLL---KPGGVLVL 102 (107)
T ss_pred hhhHHHHHHHHHHHHc---CCCCEEEE
Confidence 3344454444444 34455544
No 63
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=50.36 E-value=22 Score=38.11 Aligned_cols=97 Identities=19% Similarity=0.169 Sum_probs=63.9
Q ss_pred cceeEeCCchhHHHhhhhccccccccCCCccccccchhhhhhh---hhhcceeecccc-CCCCCcCCCCceeEEeccchh
Q 011332 93 LKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSL---VRKGIVRVADIK-FPLPYRAKSFSLVIVSDAVDY 168 (488)
Q Consensus 93 ~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~---~~~g~~~~~d~~-~~~~~r~~sfs~~~vsd~~Dy 168 (488)
.+||-||..+..+...|.+. ..+..|||+..- .=..++.+ ..+--+..+|+. ..+|+-..+|.+++.+..+.|
T Consensus 39 ~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~--~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~ 115 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKK-AGQVIALDFIES--VIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMY 115 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHH--HHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHh
Confidence 47999999999888777765 457788876431 11112211 111124446663 345555789999999888888
Q ss_pred hhHHHHHHHHHHHhhcccCCcEEe
Q 011332 169 LSPKYLNRTLPELARVSVDGVVIF 192 (488)
Q Consensus 169 l~~~YLn~~L~ai~ra~~dGv~V~ 192 (488)
+...-+.+.|..+.|+...|-.+.
T Consensus 116 l~~~~~~~~l~~~~r~Lk~gG~l~ 139 (475)
T PLN02336 116 LSDKEVENLAERMVKWLKVGGYIF 139 (475)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEE
Confidence 866667788888888877764444
No 64
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=48.88 E-value=40 Score=33.11 Aligned_cols=98 Identities=14% Similarity=0.133 Sum_probs=59.6
Q ss_pred cccccceeEeCCchhHHHhhhhccccccccCCCccc--cccchhhhhhhhhhcc-----eeeccccCCCCCcCCCCceeE
Q 011332 89 GDSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYD--LDDADANCRSLVRKGI-----VRVADIKFPLPYRAKSFSLVI 161 (488)
Q Consensus 89 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~--~~~~~~~~~~~~~~g~-----~~~~d~~~~~~~r~~sfs~~~ 161 (488)
+..-.+||-+|-.+......|.+. ..+..|||+.. ++-+..+|+ +.|+ +..+|+.--.|.-..+|.+|+
T Consensus 42 ~~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~---~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~ 117 (255)
T PRK11036 42 PPRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAE---AKGVSDNMQFIHCAAQDIAQHLETPVDLIL 117 (255)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHH---hcCCccceEEEEcCHHHHhhhcCCCCCEEE
Confidence 344468999999999877777764 57888887753 222333332 2342 344565432234457999999
Q ss_pred EeccchhhhHHHHHHHHHHHhhcccCCcEEe
Q 011332 162 VSDAVDYLSPKYLNRTLPELARVSVDGVVIF 192 (488)
Q Consensus 162 vsd~~Dyl~~~YLn~~L~ai~ra~~dGv~V~ 192 (488)
....+.|+... .++|..+.++...|-.+.
T Consensus 118 ~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~ 146 (255)
T PRK11036 118 FHAVLEWVADP--KSVLQTLWSVLRPGGALS 146 (255)
T ss_pred ehhHHHhhCCH--HHHHHHHHHHcCCCeEEE
Confidence 88777766321 245666666666654443
No 65
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=47.91 E-value=56 Score=30.58 Aligned_cols=95 Identities=26% Similarity=0.338 Sum_probs=53.3
Q ss_pred cceeEeCCchhHHHhhhhccc-cccccCCCccccccchhhhhhhhhh-cceeeccccCCCCCcCCCCceeEEeccchhhh
Q 011332 93 LKVLHVGPETCSVVSKLLKEE-DTEAWGVEPYDLDDADANCRSLVRK-GIVRVADIKFPLPYRAKSFSLVIVSDAVDYLS 170 (488)
Q Consensus 93 ~~~l~~~p~~~~~~~~~~~~~-~~~~~g~~p~~~~~~~~~~~~~~~~-g~~~~~d~~~~~~~r~~sfs~~~vsd~~Dyl~ 170 (488)
.+||.+|..+-.....|++.. .....|+++-. +.-..|+..... -.+-++|+. .+|.-.++|.+++.+..+.+.
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~vi~~~~l~~~- 111 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISA--GMLAQAKTKLSENVQFICGDAE-KLPLEDSSFDLIVSNLALQWC- 111 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEEeChH--HHHHHHHHhcCCCCeEEecchh-hCCCCCCceeEEEEhhhhhhc-
Confidence 579999999988776666543 12235665521 111222222211 123456665 456566889999887665543
Q ss_pred HHHHHHHHHHHhhcccC-CcEEe
Q 011332 171 PKYLNRTLPELARVSVD-GVVIF 192 (488)
Q Consensus 171 ~~YLn~~L~ai~ra~~d-Gv~V~ 192 (488)
. -..++|..+.++... |..++
T Consensus 112 ~-~~~~~l~~~~~~L~~~G~l~~ 133 (240)
T TIGR02072 112 D-DLSQALSELARVLKPGGLLAF 133 (240)
T ss_pred c-CHHHHHHHHHHHcCCCcEEEE
Confidence 1 234566666666665 44444
No 66
>PLN02244 tocopherol O-methyltransferase
Probab=47.87 E-value=40 Score=35.00 Aligned_cols=97 Identities=22% Similarity=0.312 Sum_probs=60.8
Q ss_pred cccceeEeCCchhHHHhhhhccccccccCCCccccccchhhhhhhhhh-cc-----eeeccccCCCCCcCCCCceeEEec
Q 011332 91 SMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRK-GI-----VRVADIKFPLPYRAKSFSLVIVSD 164 (488)
Q Consensus 91 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~-g~-----~~~~d~~~~~~~r~~sfs~~~vsd 164 (488)
.-.+||-||=.+-.....|.+.-+.+.-||++.+- .-..|+.+.++ |+ +.++|+ ..+|+...+|.+|+...
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~--~i~~a~~~~~~~g~~~~v~~~~~D~-~~~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPV--QAARANALAAAQGLSDKVSFQVADA-LNQPFEDGQFDLVWSME 194 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHH--HHHHHHHHHHhcCCCCceEEEEcCc-ccCCCCCCCccEEEECC
Confidence 34679999999888776666554556777765331 12234444332 32 456776 45788889999999877
Q ss_pred cchhhhHHHHHHHHHHHhhcccCCcEEe
Q 011332 165 AVDYLSPKYLNRTLPELARVSVDGVVIF 192 (488)
Q Consensus 165 ~~Dyl~~~YLn~~L~ai~ra~~dGv~V~ 192 (488)
...++.. ..+.+.++.|+...|-.+.
T Consensus 195 ~~~h~~d--~~~~l~e~~rvLkpGG~lv 220 (340)
T PLN02244 195 SGEHMPD--KRKFVQELARVAAPGGRII 220 (340)
T ss_pred chhccCC--HHHHHHHHHHHcCCCcEEE
Confidence 7666522 2356666666667654433
No 67
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=46.71 E-value=28 Score=28.90 Aligned_cols=97 Identities=24% Similarity=0.217 Sum_probs=60.1
Q ss_pred cceeEeCCchhHHHhhhhc-cccccccCCCccc--cccchhhhh--hhhhhcceeeccccCCCCCcCCCCceeEEec-cc
Q 011332 93 LKVLHVGPETCSVVSKLLK-EEDTEAWGVEPYD--LDDADANCR--SLVRKGIVRVADIKFPLPYRAKSFSLVIVSD-AV 166 (488)
Q Consensus 93 ~~~l~~~p~~~~~~~~~~~-~~~~~~~g~~p~~--~~~~~~~~~--~~~~~g~~~~~d~~~~~~~r~~sfs~~~vsd-~~ 166 (488)
.+||.+|-.|=...-.|++ ....+..|||+.+ ++-+..+.+ .+-.+=-+..+|+ ...+--...|..++... ..
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECSGSG
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECCCcc
Confidence 4799999999888888887 4778889998743 222333331 1122223566888 44445555599999987 55
Q ss_pred hhhhH-HHHHHHHHHHhhcccCCcE
Q 011332 167 DYLSP-KYLNRTLPELARVSVDGVV 190 (488)
Q Consensus 167 Dyl~~-~YLn~~L~ai~ra~~dGv~ 190 (488)
+.+.. ....++|..+.+....|-.
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~ 106 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGR 106 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcE
Confidence 53323 4555566666555555433
No 68
>PRK08317 hypothetical protein; Provisional
Probab=44.66 E-value=39 Score=31.52 Aligned_cols=97 Identities=24% Similarity=0.259 Sum_probs=53.7
Q ss_pred cceeEeCCchhHHHhhhhcc--ccccccCCCccc--cccchhhhhhhhhhcceeeccccCCCCCcCCCCceeEEeccchh
Q 011332 93 LKVLHVGPETCSVVSKLLKE--EDTEAWGVEPYD--LDDADANCRSLVRKGIVRVADIKFPLPYRAKSFSLVIVSDAVDY 168 (488)
Q Consensus 93 ~~~l~~~p~~~~~~~~~~~~--~~~~~~g~~p~~--~~~~~~~~~~~~~~g~~~~~d~~~~~~~r~~sfs~~~vsd~~Dy 168 (488)
.+||.+|..+-.....+.+. ...+..|+++-. ++.+..++.....+--+..+|+. .+|+...+|.+++....+.+
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~v~~~~~~~~ 99 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDAD-GLPFPDGSFDAVRSDRVLQH 99 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccc-cCCCCCCCceEEEEechhhc
Confidence 47999999886655555433 234677777642 12222221111222234556763 45677789999998876665
Q ss_pred hhHHHHHHHHHHHhhcccCCcEEe
Q 011332 169 LSPKYLNRTLPELARVSVDGVVIF 192 (488)
Q Consensus 169 l~~~YLn~~L~ai~ra~~dGv~V~ 192 (488)
+.. ..++++.+.++...|-.+.
T Consensus 100 ~~~--~~~~l~~~~~~L~~gG~l~ 121 (241)
T PRK08317 100 LED--PARALAEIARVLRPGGRVV 121 (241)
T ss_pred cCC--HHHHHHHHHHHhcCCcEEE
Confidence 421 2344555555556654443
No 69
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=43.65 E-value=35 Score=32.52 Aligned_cols=96 Identities=19% Similarity=0.238 Sum_probs=56.8
Q ss_pred cceeEeCCchhHHHhhhhcc--ccccccCCCccc--cccchhhhhhhhhhc-ceeeccccCCCCCcCCCCceeEEeccch
Q 011332 93 LKVLHVGPETCSVVSKLLKE--EDTEAWGVEPYD--LDDADANCRSLVRKG-IVRVADIKFPLPYRAKSFSLVIVSDAVD 167 (488)
Q Consensus 93 ~~~l~~~p~~~~~~~~~~~~--~~~~~~g~~p~~--~~~~~~~~~~~~~~g-~~~~~d~~~~~~~r~~sfs~~~vsd~~D 167 (488)
.+||-+|-.+......|.+. ...+..|||+.+ ++-+..+++..--.. -+..+|+. .+|+...+|..|+....+.
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~V~~~~~l~ 125 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAM-ELPFDDNSFDYVTIGFGLR 125 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechh-cCCCCCCCccEEEEecccc
Confidence 57999999999987777654 345788888642 222333333211111 12335552 3566678999998876555
Q ss_pred hhhHHHHHHHHHHHhhcccCCcEE
Q 011332 168 YLSPKYLNRTLPELARVSVDGVVI 191 (488)
Q Consensus 168 yl~~~YLn~~L~ai~ra~~dGv~V 191 (488)
++ +.+ .+.|.++.++...|-.+
T Consensus 126 ~~-~~~-~~~l~~~~~~Lk~gG~l 147 (231)
T TIGR02752 126 NV-PDY-MQVLREMYRVVKPGGKV 147 (231)
T ss_pred cC-CCH-HHHHHHHHHHcCcCeEE
Confidence 43 222 35666666666765443
No 70
>COG0312 TldD Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]
Probab=43.55 E-value=13 Score=40.05 Aligned_cols=121 Identities=17% Similarity=0.280 Sum_probs=80.0
Q ss_pred hhHHHHHhcccccceeEeCCchhHHHhhhhccccccccCCCccccccchhhhhhhhhhccee--eccc----cCCCCC--
Q 011332 81 LPVLKKAYGDSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRKGIVR--VADI----KFPLPY-- 152 (488)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~g~~~--~~d~----~~~~~~-- 152 (488)
-++|+..+|+ -|+|+-|+|+-.=.-+ ..+|--|||=|=+-+.++.||++|+++ +.|. |..++-
T Consensus 260 s~~~~~~~G~------~v~se~lti~Ddp~~~---~~~gs~~fDdEGv~t~~~~lIe~GvL~~yl~~~~sA~~~G~~~TG 330 (454)
T COG0312 260 SSLLADKLGK------RVASELLTIIDDPTLP---GGLGSYPFDDEGVPTRRTVLIENGVLKGYLHDRYSARKLGLESTG 330 (454)
T ss_pred chHhhhhhhh------hhcCceeEEEeCCCCC---CCccCcccCCCCCccceeEEEEcCEEeehhcchhhHHHhCCCcCc
Confidence 3446666666 7899999987543322 369999999999999999999999986 4454 346666
Q ss_pred --cCCCCceeEEe-ccchhhhHH--HHHHHHHHHhhcccCCcEEeeccccceeccccccccccCCCcc--eeeeEEE
Q 011332 153 --RAKSFSLVIVS-DAVDYLSPK--YLNRTLPELARVSVDGVVIFAGYPGQHRAKVSELSKFGRPAKL--RSSTWWI 222 (488)
Q Consensus 153 --r~~sfs~~~vs-d~~Dyl~~~--YLn~~L~ai~ra~~dGv~V~~GY~~WSl~Dn~~~fEW~~Gyk~--RfGl~~V 222 (488)
|..|++.+... -+.-|+.+. =+.++|..+ .+|+-|. +...|+-... .|+.. +..-|||
T Consensus 331 nar~~~~~~~p~~rm~N~~i~~G~~s~eeli~~~----~~Giyv~-~~~gg~~~~~-------~~~f~~~~~~gy~I 395 (454)
T COG0312 331 NARRGSYAHVPIPRMTNTYIEPGDYSFEELIEDV----KRGLYVT-NLWGGQNDIT-------GGFFRFSGAEGYLI 395 (454)
T ss_pred ccccccCCcCCccceecccccCCCCCHHHHHHhh----CcEEEEe-cccCceeccC-------CceEEEEeeEEEEE
Confidence 55566544433 334444444 133555555 7899998 8777885554 23333 4566776
No 71
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=43.43 E-value=35 Score=34.35 Aligned_cols=105 Identities=14% Similarity=0.162 Sum_probs=63.4
Q ss_pred chHhhHhhhhHHHHHhcccccceeEeCCchhHHHhhhhccccccccCCCccccccchhhhhhhhhh-cc---eeeccccC
Q 011332 73 CTLEVQRALPVLKKAYGDSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRK-GI---VRVADIKF 148 (488)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~-g~---~~~~d~~~ 148 (488)
...++..+++.++. .+||.+|=.+.....-|.+. ..+..||+.-. .+-..|+...++ |+ +.+.|+.-
T Consensus 108 ~~~~~~~~~~~~~~------~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~--~ai~~~~~~~~~~~l~v~~~~~D~~~ 178 (287)
T PRK12335 108 THSEVLEAVQTVKP------GKALDLGCGQGRNSLYLALL-GFDVTAVDINQ--QSLENLQEIAEKENLNIRTGLYDINS 178 (287)
T ss_pred ccHHHHHHhhccCC------CCEEEeCCCCCHHHHHHHHC-CCEEEEEECCH--HHHHHHHHHHHHcCCceEEEEechhc
Confidence 35566667665431 38999999999887777664 35556654421 122233333332 32 33456643
Q ss_pred CCCCcCCCCceeEEeccchhhhHHHHHHHHHHHhhcccCC
Q 011332 149 PLPYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARVSVDG 188 (488)
Q Consensus 149 ~~~~r~~sfs~~~vsd~~Dyl~~~YLn~~L~ai~ra~~dG 188 (488)
.-+ ..+|..++....+.++.+.-+..++..+.++...|
T Consensus 179 ~~~--~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~Lkpg 216 (287)
T PRK12335 179 ASI--QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPG 216 (287)
T ss_pred ccc--cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCC
Confidence 222 67899988887776665566667777776666664
No 72
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=43.41 E-value=54 Score=37.71 Aligned_cols=72 Identities=19% Similarity=0.280 Sum_probs=55.4
Q ss_pred ccChHHHHHHHHcCCCeEeeeccccccccCCCCCCChhHHHHHHHHHHHHHHCC------CcceEeec--cCCCCccccc
Q 011332 316 HKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYG------IQPHVTLH--HSDLPQALED 387 (488)
Q Consensus 316 ~rykeDI~LmkelGvnayRFSIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~G------IeP~VTL~--H~DlPqwL~d 387 (488)
..|++=|+.+|++|+|+...=+-|.-.+|. .|..|-+|.-=.-..|....++| |-|+|+-. |-.+|.||..
T Consensus 49 e~W~~~i~k~k~~Gln~IqtYVfWn~Hep~-~g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~ 127 (649)
T KOG0496|consen 49 EMWPDLIKKAKAGGLNVIQTYVFWNLHEPS-PGKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRN 127 (649)
T ss_pred hhhHHHHHHHHhcCCceeeeeeecccccCC-CCcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhh
Confidence 358888999999999999999999999999 67777777554555566666777 33666643 6778988876
Q ss_pred c
Q 011332 388 E 388 (488)
Q Consensus 388 k 388 (488)
.
T Consensus 128 ~ 128 (649)
T KOG0496|consen 128 V 128 (649)
T ss_pred C
Confidence 5
No 73
>PRK10150 beta-D-glucuronidase; Provisional
Probab=42.84 E-value=15 Score=40.96 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=18.9
Q ss_pred ccChHHHHHHHHcCCCeEeee
Q 011332 316 HKYKEDVKLMAKTGLDAYRFS 336 (488)
Q Consensus 316 ~rykeDI~LmkelGvnayRFS 336 (488)
..+..|+++||++|+|+.|+|
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~s 333 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTS 333 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEec
Confidence 457889999999999999996
No 74
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=40.88 E-value=49 Score=31.40 Aligned_cols=105 Identities=10% Similarity=0.116 Sum_probs=63.1
Q ss_pred hHhhHhhhhHHHHHhcccccceeEeCCchhHHHhhhhccccccccCCCccccccchhhhhhhhhh-cc---eeeccccCC
Q 011332 74 TLEVQRALPVLKKAYGDSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRK-GI---VRVADIKFP 149 (488)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~-g~---~~~~d~~~~ 149 (488)
..++.++++.++ -.+||-+|-.+.....-|.+. ..+..|+++.+ ++-..++...++ |+ +.++|+. .
T Consensus 19 ~~~l~~~~~~~~------~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~--~~l~~a~~~~~~~~~~v~~~~~d~~-~ 88 (195)
T TIGR00477 19 HSAVREAVKTVA------PCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNP--ASIASVLDMKARENLPLRTDAYDIN-A 88 (195)
T ss_pred hHHHHHHhccCC------CCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCH--HHHHHHHHHHHHhCCCceeEeccch-h
Confidence 346777777654 248999999999877666653 44556654432 233333333322 32 3345664 2
Q ss_pred CCCcCCCCceeEEeccchhhhHHHHHHHHHHHhhcccCCc
Q 011332 150 LPYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARVSVDGV 189 (488)
Q Consensus 150 ~~~r~~sfs~~~vsd~~Dyl~~~YLn~~L~ai~ra~~dGv 189 (488)
+|. .++|.+++.+....++.+..+.+++.++.++...|-
T Consensus 89 ~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 127 (195)
T TIGR00477 89 AAL-NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGG 127 (195)
T ss_pred ccc-cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCc
Confidence 333 368999988866666555556667777766666653
No 75
>smart00642 Aamy Alpha-amylase domain.
Probab=40.20 E-value=53 Score=30.91 Aligned_cols=67 Identities=13% Similarity=0.233 Sum_probs=44.5
Q ss_pred cccChHHHHHHHHcCCCeEeeeccccccc---------cCCCCCCCh--hHHHHHHHHHHHHHHCCCcceEeec--cCCC
Q 011332 315 YHKYKEDVKLMAKTGLDAYRFSISWSRLI---------PNGRGPVNP--KGLQYYNNLINELISYGIQPHVTLH--HSDL 381 (488)
Q Consensus 315 Y~rykeDI~LmkelGvnayRFSIsWsRI~---------P~G~G~vN~--egv~~Y~~lId~L~~~GIeP~VTL~--H~Dl 381 (488)
+....+-++-+++||+++.-++--+.... |..--.+++ -..+=++++++++.++||++++.+- |-.-
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 45566777889999999987766544442 110011221 1245688999999999999998764 6544
No 76
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=39.69 E-value=55 Score=29.98 Aligned_cols=66 Identities=12% Similarity=0.094 Sum_probs=43.7
Q ss_pred HHHHHHHcCCCeEeeecc--ccc-cccCCCC--CCChhHHHHHHHHHHHHHHCCCcceEeec-cCC------CCccccc
Q 011332 321 DVKLMAKTGLDAYRFSIS--WSR-LIPNGRG--PVNPKGLQYYNNLINELISYGIQPHVTLH-HSD------LPQALED 387 (488)
Q Consensus 321 DI~LmkelGvnayRFSIs--WsR-I~P~G~G--~vN~egv~~Y~~lId~L~~~GIeP~VTL~-H~D------lPqwL~d 387 (488)
=++.||++|+|+.-+... +-- -.|+..+ ....+ -+...++|+.+.++||++++=+- +|| +|.|+..
T Consensus 5 ~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPeW~~~ 82 (132)
T PF14871_consen 5 FVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPEWFVR 82 (132)
T ss_pred HHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCceeeE
Confidence 368999999999887332 111 1344222 22233 58999999999999999887553 244 5777763
No 77
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=39.65 E-value=43 Score=34.90 Aligned_cols=96 Identities=18% Similarity=0.096 Sum_probs=59.0
Q ss_pred cceeEeCCchhHHHhhhhccccccccCCCccccccch-hhhhhhh-hhccee--eccccCCCCCcCCCCceeEEeccchh
Q 011332 93 LKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDAD-ANCRSLV-RKGIVR--VADIKFPLPYRAKSFSLVIVSDAVDY 168 (488)
Q Consensus 93 ~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~-~~~~~~~-~~g~~~--~~d~~~~~~~r~~sfs~~~vsd~~Dy 168 (488)
++||-||-.+-.....++++......||+|...--.. ..++.+. ..+.+. ..|+. .||.. .+|..|+....+-+
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie-~lp~~-~~FD~V~s~gvL~H 200 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIE-QLHEL-YAFDTVFSMGVLYH 200 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHH-HCCCC-CCcCEEEEcchhhc
Confidence 5899999999988888888766678999997732110 1122221 122222 22332 13332 48999888766655
Q ss_pred hhHHHHHHHHHHHhhcccCCcEEe
Q 011332 169 LSPKYLNRTLPELARVSVDGVVIF 192 (488)
Q Consensus 169 l~~~YLn~~L~ai~ra~~dGv~V~ 192 (488)
. ....++|.++.++...|-.+.
T Consensus 201 ~--~dp~~~L~el~r~LkpGG~Lv 222 (314)
T TIGR00452 201 R--KSPLEHLKQLKHQLVIKGELV 222 (314)
T ss_pred c--CCHHHHHHHHHHhcCCCCEEE
Confidence 4 344567888888888764444
No 78
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=39.61 E-value=25 Score=30.46 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=25.4
Q ss_pred CCCCchhHHHHHHHHHhhhhhhhcCCCccchh
Q 011332 29 RSSPLLSVILLAVGAVLLIGYLYSGSGKTTIE 60 (488)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (488)
..+-|++|.+++|-.||||..+-++|++-.+.
T Consensus 23 ~pn~lMtILivLVIIiLlImlfqsSS~~~~s~ 54 (85)
T PF10717_consen 23 NPNTLMTILIVLVIIILLIMLFQSSSNGNSSS 54 (85)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 34568888888888899999988888876664
No 79
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=39.27 E-value=75 Score=31.66 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=38.2
Q ss_pred hHHHHHHHHcCCCeEeeecccc-ccccCCCCCCChhHHHHHHHHHHHHHHCCCcceE
Q 011332 319 KEDVKLMAKTGLDAYRFSISWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHV 374 (488)
Q Consensus 319 keDI~LmkelGvnayRFSIsWs-RI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~V 374 (488)
+|.++.|+++|++.+-++++-+ .+++.-.+. ...+.+.+.++.++++||+..+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~---~s~~~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIIST---HTYDDRVDTLENAKKAGLKVCS 176 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCC---CCHHHHHHHHHHHHHcCCEEEE
Confidence 7899999999999999998822 133331121 2357777889999999997543
No 80
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=38.74 E-value=18 Score=42.47 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.8
Q ss_pred cccccccChHHHHHHHHcCCCeEeee
Q 011332 311 ACDEYHKYKEDVKLMAKTGLDAYRFS 336 (488)
Q Consensus 311 a~D~Y~rykeDI~LmkelGvnayRFS 336 (488)
.+..+..+..|+++||++|+|++|.|
T Consensus 316 ~~~~~~~~~~dl~lmk~~n~N~vRts 341 (808)
T COG3250 316 RVTDEDAMERDLKLMKEANMNSVRTS 341 (808)
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEec
Confidence 45566779999999999999999998
No 81
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=36.31 E-value=38 Score=28.13 Aligned_cols=90 Identities=26% Similarity=0.324 Sum_probs=57.5
Q ss_pred eeEeCCchhHHHhhhhccc----cccccCCCccccccchhhhhhhhh-hc---ceeeccccCCCCCcCCCCceeEEecc-
Q 011332 95 VLHVGPETCSVVSKLLKEE----DTEAWGVEPYDLDDADANCRSLVR-KG---IVRVADIKFPLPYRAKSFSLVIVSDA- 165 (488)
Q Consensus 95 ~l~~~p~~~~~~~~~~~~~----~~~~~g~~p~~~~~~~~~~~~~~~-~g---~~~~~d~~~~~~~r~~sfs~~~vsd~- 165 (488)
||-+|..+-.+...|++-- +...+||+.-. +.=..|+...+ .| -..++|+.. ||+...+|.+|+.+..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~--~~l~~~~~~~~~~~~~~~~~~~D~~~-l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISP--EMLELAKKRFSEDGPKVRFVQADARD-LPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-H--HHHHHHHHHSHHTTTTSEEEESCTTC-HHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCH--HHHHHHHHhchhcCCceEEEECCHhH-CcccCCCeeEEEEcCCc
Confidence 4667777766666666431 25566654321 12233454443 22 356788865 8888889999999855
Q ss_pred chhhhHHHHHHHHHHHhhcccC
Q 011332 166 VDYLSPKYLNRTLPELARVSVD 187 (488)
Q Consensus 166 ~Dyl~~~YLn~~L~ai~ra~~d 187 (488)
++|+.+.-+.+.+..+++....
T Consensus 78 ~~~~~~~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 78 LHHLSPEELEALLRRIARLLRP 99 (101)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhCC
Confidence 9999999999999998776654
No 82
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=32.74 E-value=24 Score=42.36 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=21.2
Q ss_pred ccccChHHHHHHHHcCCCeEeeec
Q 011332 314 EYHKYKEDVKLMAKTGLDAYRFSI 337 (488)
Q Consensus 314 ~Y~rykeDI~LmkelGvnayRFSI 337 (488)
....+++|+++||++|+|+.|+|.
T Consensus 353 ~~e~~~~dl~lmK~~g~NavR~sH 376 (1021)
T PRK10340 353 GMDRVEKDIQLMKQHNINSVRTAH 376 (1021)
T ss_pred CHHHHHHHHHHHHHCCCCEEEecC
Confidence 356789999999999999999974
No 83
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=31.89 E-value=25 Score=42.24 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.0
Q ss_pred ccccChHHHHHHHHcCCCeEeeec
Q 011332 314 EYHKYKEDVKLMAKTGLDAYRFSI 337 (488)
Q Consensus 314 ~Y~rykeDI~LmkelGvnayRFSI 337 (488)
....+++||++||++|+|+.|+|.
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~sH 392 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCSH 392 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEecC
Confidence 456789999999999999999964
No 84
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.72 E-value=1.6e+02 Score=27.37 Aligned_cols=116 Identities=15% Similarity=0.173 Sum_probs=66.9
Q ss_pred hHhhhhHHHHHhcccccceeEeCCchhHHHhhhhccccccccCCCccccccchhhhhhhhhhcceeeccccCCCC-CcCC
Q 011332 77 VQRALPVLKKAYGDSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRKGIVRVADIKFPLP-YRAK 155 (488)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~g~~~~~d~~~~~~-~r~~ 155 (488)
-+.||-.+|+++|-...+.++.|= ...++ +|+ ..+.-.|+.==+--..|.++|..-.-+ =..+
T Consensus 12 ~~~Al~fY~~vFgae~~~~~~~~d------------~~~~~--~~~--~~~~i~HA~l~i~g~~im~sd~~~~~~~~~~~ 75 (136)
T COG2764 12 AREALAFYKEVFGAEELKRVPFGD------------MPSSA--GEP--PGGRIMHAELRIGGSTIMLSDAFPDMGATEGG 75 (136)
T ss_pred HHHHHHHHHHHhCceEEEEEEcCc------------cCccc--ccc--ccCceEEEEEEECCEEEEEecCCCccCcccCC
Confidence 368999999999999888887652 11111 111 122222221112233455666544333 1224
Q ss_pred CCceeEEeccchhhhHHHHHHHHHHHhhcccCCcEEeeccccceeccccccccccCCC---cceeeeEEEecccC
Q 011332 156 SFSLVIVSDAVDYLSPKYLNRTLPELARVSVDGVVIFAGYPGQHRAKVSELSKFGRPA---KLRSSTWWIRYFLQ 227 (488)
Q Consensus 156 sfs~~~vsd~~Dyl~~~YLn~~L~ai~ra~~dGv~V~~GY~~WSl~Dn~~~fEW~~Gy---k~RfGl~~VDf~~~ 227 (488)
..|+.|-.+..| +..+...+ .+.|+.|. |.-++.| |+.-| +-|||..|- ++.+
T Consensus 76 ~~s~~l~~~~~d------~da~f~~a---~~aGa~v~--------mpl~~~f-wG~r~G~v~D~fGv~W~-l~~~ 131 (136)
T COG2764 76 GTSLSLDLYVED------VDAVFERA---AAAGATVV--------MPLEDTF-WGDRYGQVTDPFGVVWM-LNTP 131 (136)
T ss_pred CeeEEEEEEehH------HHHHHHHH---HhcCCeEE--------ecchhcC-cccceEEEECCCCCEEE-EecC
Confidence 566666664444 33444444 67898888 6655556 88877 678998887 5544
No 85
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=31.67 E-value=89 Score=32.38 Aligned_cols=77 Identities=19% Similarity=0.384 Sum_probs=50.7
Q ss_pred ccChHHHHHHHHcCCCeE------------eeec-cccccccCCCCCCChhHHHHHHHHHHHHHHCCCcceEee-cc---
Q 011332 316 HKYKEDVKLMAKTGLDAY------------RFSI-SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-HH--- 378 (488)
Q Consensus 316 ~rykeDI~LmkelGvnay------------RFSI-sWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL-~H--- 378 (488)
...++=++.|+++|+|+. .=++ .|++.++.-.+ .+ .|.+....+|++..++|||.+.-+ +.
T Consensus 19 ~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~-~~-pg~DpL~~~I~eaHkrGlevHAW~~~~~~~ 96 (311)
T PF02638_consen 19 EQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQG-KD-PGFDPLEFMIEEAHKRGLEVHAWFRVGFNA 96 (311)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCC-CC-CCccHHHHHHHHHHHcCCEEEEEEEeecCC
Confidence 446777899999999984 3333 56666654212 12 367888999999999999987665 11
Q ss_pred -------CCCCcccccccCCCcc
Q 011332 379 -------SDLPQALEDEYGGWIN 394 (488)
Q Consensus 379 -------~DlPqwL~dkyGGWln 394 (488)
-..|.|+..+..||.-
T Consensus 97 ~~~~~~~~~~p~~~~~~~~~~~~ 119 (311)
T PF02638_consen 97 PDVSHILKKHPEWFAVNHPGWVR 119 (311)
T ss_pred CchhhhhhcCchhheecCCCcee
Confidence 1357776533456553
No 86
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=30.22 E-value=1.4e+02 Score=29.08 Aligned_cols=93 Identities=18% Similarity=0.242 Sum_probs=54.6
Q ss_pred ccccceeEeCCchhHHHhhhhccc-cccccCCCccccccchhhhhhhhhhcceeeccccCCCCCcCCCCceeEEeccchh
Q 011332 90 DSMLKVLHVGPETCSVVSKLLKEE-DTEAWGVEPYDLDDADANCRSLVRKGIVRVADIKFPLPYRAKSFSLVIVSDAVDY 168 (488)
Q Consensus 90 ~~~~~~l~~~p~~~~~~~~~~~~~-~~~~~g~~p~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~r~~sfs~~~vsd~~Dy 168 (488)
+.-.+||.||-.+..+...|.+.- ..+..||++.+ +.-..|+....+--+..+|+.-..| ..+|.+++.+..+.+
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~--~~i~~a~~~~~~~~~~~~d~~~~~~--~~~fD~v~~~~~l~~ 105 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSP--AMLAEARSRLPDCQFVEADIASWQP--PQALDLIFANASLQW 105 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHhCCCCeEEECchhccCC--CCCccEEEEccChhh
Confidence 344689999999988766665442 46788888764 1112222222222355677753222 358999988877766
Q ss_pred hhHHHHHHHHHHHhhcccCC
Q 011332 169 LSPKYLNRTLPELARVSVDG 188 (488)
Q Consensus 169 l~~~YLn~~L~ai~ra~~dG 188 (488)
+ ++ ..+.|+.+.++...|
T Consensus 106 ~-~d-~~~~l~~~~~~Lkpg 123 (258)
T PRK01683 106 L-PD-HLELFPRLVSLLAPG 123 (258)
T ss_pred C-CC-HHHHHHHHHHhcCCC
Confidence 5 22 234555555555654
No 87
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=30.14 E-value=94 Score=29.90 Aligned_cols=57 Identities=19% Similarity=0.367 Sum_probs=38.7
Q ss_pred hHHHHHHHHcCCCeEeeeccccccccCCC-C-------CCC--hhHHHHHHHHHHHHHHCCCcceEeec
Q 011332 319 KEDVKLMAKTGLDAYRFSISWSRLIPNGR-G-------PVN--PKGLQYYNNLINELISYGIQPHVTLH 377 (488)
Q Consensus 319 keDI~LmkelGvnayRFSIsWsRI~P~G~-G-------~vN--~egv~~Y~~lId~L~~~GIeP~VTL~ 377 (488)
.+-++-+++||+++.-++--+. .|.+. | .+| --..+=++++|+++.++||++|+.+-
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~--~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFE--SPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EE--SSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccc--cccccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 4668899999999987765444 22110 1 111 11345688999999999999999874
No 88
>PRK10148 hypothetical protein; Provisional
Probab=29.30 E-value=1.9e+02 Score=26.66 Aligned_cols=121 Identities=16% Similarity=0.137 Sum_probs=58.6
Q ss_pred hhHhhhhHHHHHhcccccceeEeCCchhHHHhhhhccccccccCCCccc--cccchhhhhhhhhhcceeeccccCCCCCc
Q 011332 76 EVQRALPVLKKAYGDSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYD--LDDADANCRSLVRKGIVRVADIKFPLPYR 153 (488)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~--~~~~~~~~~~~~~~g~~~~~d~~~~~~~r 153 (488)
....||-+.++++|.....+...|. .-.+.+-+..++++=. -++.=-++.=-+--+.+-++|---.-+-.
T Consensus 12 ~a~eAi~FY~~~Fgae~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~~lm~sD~~~~~~~~ 83 (147)
T PRK10148 12 NCADAIAYYQQTLGAELLYKISFGE--------MPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGSDIMMSDAIPSGKAH 83 (147)
T ss_pred CHHHHHHHHHHHhCCEEEEEEEccc--------CCccccccccCCCccccCcCCcEEEEEEEECCEEEEEECCCCCcCCC
Confidence 4678999999999987766655441 1111111122222100 01111122212223445556642111212
Q ss_pred CCCCceeEEeccchhhhHHHHHHHHHHHhhcccCCcEEeeccccceeccccccccccCCC---cceeeeEEE
Q 011332 154 AKSFSLVIVSDAVDYLSPKYLNRTLPELARVSVDGVVIFAGYPGQHRAKVSELSKFGRPA---KLRSSTWWI 222 (488)
Q Consensus 154 ~~sfs~~~vsd~~Dyl~~~YLn~~L~ai~ra~~dGv~V~~GY~~WSl~Dn~~~fEW~~Gy---k~RfGl~~V 222 (488)
..++|+.+..+..|-. .++..+| ++|..|. |.-++ .-|+.-| +-|||.-|.
T Consensus 84 ~~~~~l~l~~~d~ee~-----~~~~~aL----a~gg~v~--------mpl~~-~~wg~~~g~v~D~fGi~W~ 137 (147)
T PRK10148 84 YSGFTLVLDTQDVEEG-----KRWFDNL----AANGKIE--------MAWQE-TFWAHGFGKVTDKFGVPWM 137 (147)
T ss_pred CCeEEEEEECCCHHHH-----HHHHHHh----hCCCEEE--------ecchh-cchhhccEEEECCCCCEEE
Confidence 2467776665544443 2334455 5666666 43322 3466554 678998776
No 89
>PLN02361 alpha-amylase
Probab=28.55 E-value=88 Score=33.88 Aligned_cols=64 Identities=17% Similarity=0.318 Sum_probs=45.4
Q ss_pred cccccChHHHHHHHHcCCCeEeeeccccccccCCCC-----CCChh--HHHHHHHHHHHHHHCCCcceEee
Q 011332 313 DEYHKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRG-----PVNPK--GLQYYNNLINELISYGIQPHVTL 376 (488)
Q Consensus 313 D~Y~rykeDI~LmkelGvnayRFSIsWsRI~P~G~G-----~vN~e--gv~~Y~~lId~L~~~GIeP~VTL 376 (488)
.+|....+.++-+++||+++.=++-...-.-+.|-. .+|+. ..+=++++|+++.++||++++.+
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 478889999999999999998766644333333211 11211 13458899999999999999865
No 90
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=28.36 E-value=1.4e+02 Score=29.97 Aligned_cols=54 Identities=26% Similarity=0.282 Sum_probs=34.4
Q ss_pred cCcccchHhhHhhhhHHHHHhcccccceeEeCCchhHHHhhhhccccccccCCCccccccch
Q 011332 68 EGVVSCTLEVQRALPVLKKAYGDSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDAD 129 (488)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~ 129 (488)
+.+.-+--|.+-.+|.+... .-++||.+|..+..+...+++.. +++-+++-|.|
T Consensus 52 ~~~e~~y~e~l~~~~l~~~~---~p~~VL~iG~G~G~~~~~ll~~~-----~~~~v~~veid 105 (270)
T TIGR00417 52 ERDEFIYHEMIAHVPLFTHP---NPKHVLVIGGGDGGVLREVLKHK-----SVEKATLVDID 105 (270)
T ss_pred CchHHHHHHHhhhhHhhcCC---CCCEEEEEcCCchHHHHHHHhCC-----CcceEEEEeCC
Confidence 33444555666667776532 23499999999999888888754 23444444444
No 91
>PRK06202 hypothetical protein; Provisional
Probab=28.31 E-value=1e+02 Score=29.61 Aligned_cols=99 Identities=22% Similarity=0.239 Sum_probs=60.7
Q ss_pred ccccceeEeCCchhHHHhhhhcc---c--cccccCCCccccccchhhhhhhhh-hc-ceeeccccCCCCCcCCCCceeEE
Q 011332 90 DSMLKVLHVGPETCSVVSKLLKE---E--DTEAWGVEPYDLDDADANCRSLVR-KG-IVRVADIKFPLPYRAKSFSLVIV 162 (488)
Q Consensus 90 ~~~~~~l~~~p~~~~~~~~~~~~---~--~~~~~g~~p~~~~~~~~~~~~~~~-~g-~~~~~d~~~~~~~r~~sfs~~~v 162 (488)
..-.+||-+|-.|-.+...|.+. . ..+..||++.. +.-..|+.... .+ -+++.|.. -+|....+|.+|+.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~--~~l~~a~~~~~~~~~~~~~~~~~-~l~~~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDP--RAVAFARANPRRPGVTFRQAVSD-ELVAEGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCH--HHHHHHHhccccCCCeEEEEecc-cccccCCCccEEEE
Confidence 34568999999987765555432 1 23677777743 22222333221 12 13333321 13334679999999
Q ss_pred eccchhhhHHHHHHHHHHHhhcccCCcEEe
Q 011332 163 SDAVDYLSPKYLNRTLPELARVSVDGVVIF 192 (488)
Q Consensus 163 sd~~Dyl~~~YLn~~L~ai~ra~~dGv~V~ 192 (488)
+..+.++....+.++|.++.|+.. |..++
T Consensus 136 ~~~lhh~~d~~~~~~l~~~~r~~~-~~~~i 164 (232)
T PRK06202 136 NHFLHHLDDAEVVRLLADSAALAR-RLVLH 164 (232)
T ss_pred CCeeecCChHHHHHHHHHHHHhcC-eeEEE
Confidence 999988877778889999988775 44444
No 92
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=28.07 E-value=92 Score=32.32 Aligned_cols=96 Identities=21% Similarity=0.146 Sum_probs=58.9
Q ss_pred cceeEeCCchhHHHhhhhccccccccCCCccccccch--hhhhhhhhh--cceeeccccCCCCCcCCCCceeEEeccchh
Q 011332 93 LKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDAD--ANCRSLVRK--GIVRVADIKFPLPYRAKSFSLVIVSDAVDY 168 (488)
Q Consensus 93 ~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~--~~~~~~~~~--g~~~~~d~~~~~~~r~~sfs~~~vsd~~Dy 168 (488)
++||-||-.+-.....+++.......||+|....-.. ..++.+-.. --+...|+. .+|+ ..+|.+++....+.+
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e-~lp~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIE-QLPA-LKAFDTVFSMGVLYH 201 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHH-HCCC-cCCcCEEEECChhhc
Confidence 6899999999888888887765569999987643221 111111001 113334543 4577 788999887666544
Q ss_pred hhHHHHHHHHHHHhhcccCCcEEe
Q 011332 169 LSPKYLNRTLPELARVSVDGVVIF 192 (488)
Q Consensus 169 l~~~YLn~~L~ai~ra~~dGv~V~ 192 (488)
. . -..++|+.+.++...|-.+.
T Consensus 202 ~-~-dp~~~L~~l~~~LkpGG~lv 223 (322)
T PRK15068 202 R-R-SPLDHLKQLKDQLVPGGELV 223 (322)
T ss_pred c-C-CHHHHHHHHHHhcCCCcEEE
Confidence 3 2 23456777777777654433
No 93
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=27.58 E-value=97 Score=31.47 Aligned_cols=51 Identities=14% Similarity=0.427 Sum_probs=39.6
Q ss_pred cccChHHHHHHHHcCCCeEee----------------------eccccccccCCCCCCChhHHHHHHHHHHHHHHCCCcc
Q 011332 315 YHKYKEDVKLMAKTGLDAYRF----------------------SISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQP 372 (488)
Q Consensus 315 Y~rykeDI~LmkelGvnayRF----------------------SIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP 372 (488)
--.-+.=|+||++||.++..| .+ | ++|. |.|| ++-+..++..+++.|++-
T Consensus 134 iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPT--GGId---l~Nf~~I~~i~ldaGv~k 205 (236)
T TIGR03581 134 IVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPT--GGID---LDNFEEIVQIALDAGVEK 205 (236)
T ss_pred eeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCC--CCcc---HHhHHHHHHHHHHcCCCe
Confidence 445667799999999998643 34 3 5787 5677 788899999999999886
Q ss_pred e
Q 011332 373 H 373 (488)
Q Consensus 373 ~ 373 (488)
+
T Consensus 206 v 206 (236)
T TIGR03581 206 V 206 (236)
T ss_pred e
Confidence 5
No 94
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=26.27 E-value=86 Score=29.72 Aligned_cols=94 Identities=17% Similarity=0.218 Sum_probs=48.9
Q ss_pred cceeEeCCchhHHHhhhhccc-cccccCCCccccccchhhhhhhhh-hc-----ceeeccccCCCCCcCCCCceeEEecc
Q 011332 93 LKVLHVGPETCSVVSKLLKEE-DTEAWGVEPYDLDDADANCRSLVR-KG-----IVRVADIKFPLPYRAKSFSLVIVSDA 165 (488)
Q Consensus 93 ~~~l~~~p~~~~~~~~~~~~~-~~~~~g~~p~~~~~~~~~~~~~~~-~g-----~~~~~d~~~~~~~r~~sfs~~~vsd~ 165 (488)
++||.||..+......+.++- ..+..|+++-. +.-..++..++ .| -+...|+.- .|+ ..+|.+++....
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~--~~~~~a~~~~~~~gl~~~i~~~~~d~~~-~~~-~~~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISP--EQAEVGRERIRALGLQGRIRIFYRDSAK-DPF-PDTYDLVFGFEV 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHhcCCCcceEEEeccccc-CCC-CCCCCEeehHHH
Confidence 479999999888777776553 34566665521 11122333222 22 344567622 233 357988876544
Q ss_pred chhhhHHHHHHHHHHHhhcccC-CcEEe
Q 011332 166 VDYLSPKYLNRTLPELARVSVD-GVVIF 192 (488)
Q Consensus 166 ~Dyl~~~YLn~~L~ai~ra~~d-Gv~V~ 192 (488)
+.+. .. ....+.++.++... |.-+.
T Consensus 77 l~~~-~~-~~~~l~~~~~~LkpgG~l~i 102 (224)
T smart00828 77 IHHI-KD-KMDLFSNISRHLKDGGHLVL 102 (224)
T ss_pred HHhC-CC-HHHHHHHHHHHcCCCCEEEE
Confidence 4333 11 23455555555555 44444
No 95
>PF06040 Adeno_E3: Adenovirus E3 protein; InterPro: IPR009266 This family consists of several Adenovirus E3 proteins. The E3 protein does not seem to be essential for virus replication in cultured cells suggesting that the protein may function in virus-host interactions [].
Probab=25.80 E-value=55 Score=30.10 Aligned_cols=45 Identities=29% Similarity=0.394 Sum_probs=28.1
Q ss_pred CCccCCCCCCc-cccccccccCCCCCchhHHHHHHHHH-----hhhhhhhc
Q 011332 8 PARRLADGGSI-PFVGSAHSKSRSSPLLSVILLAVGAV-----LLIGYLYS 52 (488)
Q Consensus 8 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 52 (488)
.+|..-+.-.. -+.|-++..+.++|..-++++++|.+ +...|+|-
T Consensus 58 ~~R~l~~tNtt~~tGGELr~~pte~p~evvG~l~LGvV~GG~i~vLcylyl 108 (127)
T PF06040_consen 58 HSRSLSDTNTTTKTGGELRGPPTESPWEVVGYLILGVVAGGLIAVLCYLYL 108 (127)
T ss_pred hcccccccCCccccCceEeCCCCCCCeeeeehhhHHHHhccHHHHHHHHhc
Confidence 33443444333 45578888888899877777766544 45557663
No 96
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=25.36 E-value=1.2e+02 Score=30.66 Aligned_cols=60 Identities=17% Similarity=0.252 Sum_probs=45.8
Q ss_pred hHHHHHHHHcCCCeEeeeccccccccCC-CCCCChhHHHHHHHHHHHHHHCCCcceEeecc
Q 011332 319 KEDVKLMAKTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHH 378 (488)
Q Consensus 319 keDI~LmkelGvnayRFSIsWsRI~P~G-~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H 378 (488)
.+|++.+.+.|++..|+.++=|...=.. .+.=-++.++-..+++...+++|+++.+++..
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ed 134 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSED 134 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 5689999999999999988655433221 12112577899999999999999999999863
No 97
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=25.23 E-value=1.5e+02 Score=31.71 Aligned_cols=60 Identities=22% Similarity=0.290 Sum_probs=52.6
Q ss_pred HHHHHHHcCCCeEeeeccccccccCCCCCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCc
Q 011332 321 DVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQ 383 (488)
Q Consensus 321 DI~LmkelGvnayRFSIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~DlPq 383 (488)
+++.+|++|.++..|=+=|. |+++..+|..-..|-+++.+++.+.+|--|+-+..+|.+.
T Consensus 112 s~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~~ 171 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDGDEEINDQKQAYIERIGSECTAEDIPFFLELLTYDERI 171 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCcc
Confidence 47889999999999887665 7776789999999999999999999999999998887554
No 98
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=25.04 E-value=1.2e+02 Score=28.18 Aligned_cols=93 Identities=23% Similarity=0.227 Sum_probs=50.4
Q ss_pred cceeEeCCchhHHHhhhhcccc--ccccCCCccccccchhhhhhhhh---hcceeeccccCCCCCcCCCCceeEEeccch
Q 011332 93 LKVLHVGPETCSVVSKLLKEED--TEAWGVEPYDLDDADANCRSLVR---KGIVRVADIKFPLPYRAKSFSLVIVSDAVD 167 (488)
Q Consensus 93 ~~~l~~~p~~~~~~~~~~~~~~--~~~~g~~p~~~~~~~~~~~~~~~---~g~~~~~d~~~~~~~r~~sfs~~~vsd~~D 167 (488)
..||.+|..+-.....+++.-. .+..|+++-+ +.-..|+.-.. +--+...|+. .+|+...+|.+++.+..+.
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~--~~~~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSS--EMLEVAKKKSELPLNIEFIQADAE-ALPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhcCCCceEEEEECCH--HHHHHHHHHhccCCCceEEecchh-cCCCCCCcEEEEEEeeeeC
Confidence 4799999888776666665543 2556665421 11122222211 1234456664 4667778899998875443
Q ss_pred hhhHHHHHHHHHHHhhcccCCcE
Q 011332 168 YLSPKYLNRTLPELARVSVDGVV 190 (488)
Q Consensus 168 yl~~~YLn~~L~ai~ra~~dGv~ 190 (488)
+. ..+..+|+.+.++...|-.
T Consensus 118 ~~--~~~~~~l~~~~~~L~~gG~ 138 (223)
T TIGR01934 118 NV--TDIQKALREMYRVLKPGGR 138 (223)
T ss_pred Cc--ccHHHHHHHHHHHcCCCcE
Confidence 32 1233555555555555433
No 99
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=24.96 E-value=89 Score=33.62 Aligned_cols=39 Identities=33% Similarity=0.588 Sum_probs=37.0
Q ss_pred CCCCceeEEeccchhhhHHHHHHHHHHHhhcccCCcEEe
Q 011332 154 AKSFSLVIVSDAVDYLSPKYLNRTLPELARVSVDGVVIF 192 (488)
Q Consensus 154 ~~sfs~~~vsd~~Dyl~~~YLn~~L~ai~ra~~dGv~V~ 192 (488)
..||+..+++|.-||+.+.-+++.+.+|.++...|..|.
T Consensus 293 ~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~ 331 (380)
T PF11899_consen 293 PGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVL 331 (380)
T ss_pred CCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 578999999999999999999999999999999999888
No 100
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=24.71 E-value=1.1e+02 Score=27.38 Aligned_cols=97 Identities=21% Similarity=0.326 Sum_probs=60.6
Q ss_pred ccccceeEeCCchhHHHhhhhccc--cccccCCCccccccchhhhhhhhh-hcc----eeeccccCCCC--CcCCCCcee
Q 011332 90 DSMLKVLHVGPETCSVVSKLLKEE--DTEAWGVEPYDLDDADANCRSLVR-KGI----VRVADIKFPLP--YRAKSFSLV 160 (488)
Q Consensus 90 ~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~g~~p~~~~~~~~~~~~~~~-~g~----~~~~d~~~~~~--~r~~sfs~~ 160 (488)
++-.+||.+|-.|-...-.|+++- ..+.+||+.-+ +.=..||...+ .|+ +.++||.- || +. ..|.++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~--~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~-~~~D~I 77 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISE--EMIEYAKKRAKELGLDNIEFIQGDIED-LPQELE-EKFDII 77 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSH--HHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSS-TTEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcH--HHHHHhhcccccccccccceEEeehhc-cccccC-CCeeEE
Confidence 355789999999999998888532 55677775432 22233444332 333 35678766 77 66 999999
Q ss_pred EEeccchhhhHHHHHHHHHHHhhcccCCcEEe
Q 011332 161 IVSDAVDYLSPKYLNRTLPELARVSVDGVVIF 192 (488)
Q Consensus 161 ~vsd~~Dyl~~~YLn~~L~ai~ra~~dGv~V~ 192 (488)
+....+.+.. ...++|+.+.++..+|-.+.
T Consensus 78 ~~~~~l~~~~--~~~~~l~~~~~~lk~~G~~i 107 (152)
T PF13847_consen 78 ISNGVLHHFP--DPEKVLKNIIRLLKPGGILI 107 (152)
T ss_dssp EEESTGGGTS--HHHHHHHHHHHHEEEEEEEE
T ss_pred EEcCchhhcc--CHHHHHHHHHHHcCCCcEEE
Confidence 9987765542 23456666666666544444
No 101
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=24.21 E-value=1.1e+02 Score=30.96 Aligned_cols=97 Identities=26% Similarity=0.263 Sum_probs=58.2
Q ss_pred ccceeEeCCchhHHHhhhhccc-cccccCCCccc--cccchhhhhhhhhhcce--eeccccCCCCCcCCCCceeEEeccc
Q 011332 92 MLKVLHVGPETCSVVSKLLKEE-DTEAWGVEPYD--LDDADANCRSLVRKGIV--RVADIKFPLPYRAKSFSLVIVSDAV 166 (488)
Q Consensus 92 ~~~~l~~~p~~~~~~~~~~~~~-~~~~~g~~p~~--~~~~~~~~~~~~~~g~~--~~~d~~~~~~~r~~sfs~~~vsd~~ 166 (488)
=.+||-||=.|=-+--+|.|+- ..+.+|+++.+ ++-+-..|+.+=-++ | -++|. --||+.-.||..+.++..+
T Consensus 52 g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dA-e~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 52 GDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDA-ENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEech-hhCCCCCCccCEEEeeehh
Confidence 3579999988866655554443 25666665432 222222222221111 1 13443 3699999999999999654
Q ss_pred hhhhHHHHHHHHHHHhhcccCCcEEe
Q 011332 167 DYLSPKYLNRTLPELARVSVDGVVIF 192 (488)
Q Consensus 167 Dyl~~~YLn~~L~ai~ra~~dGv~V~ 192 (488)
... ....+.|.++.||..-|..+.
T Consensus 130 rnv--~d~~~aL~E~~RVlKpgG~~~ 153 (238)
T COG2226 130 RNV--TDIDKALKEMYRVLKPGGRLL 153 (238)
T ss_pred hcC--CCHHHHHHHHHHhhcCCeEEE
Confidence 443 145688999999998876433
No 102
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=24.04 E-value=75 Score=31.07 Aligned_cols=100 Identities=21% Similarity=0.363 Sum_probs=61.5
Q ss_pred HhhHhhhhHHHHHhcccccceeEeCCchhHHHhhhhccccccccCCCccccccc-hhhhhhhhhh-cc---eeecccc-C
Q 011332 75 LEVQRALPVLKKAYGDSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDA-DANCRSLVRK-GI---VRVADIK-F 148 (488)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~-~~~~~~~~~~-g~---~~~~d~~-~ 148 (488)
+||.+|+++++. .++|-+|=....=-.=|-+.+ |-|.-.|+.++ -.+.+.+.++ ++ .+++||. +
T Consensus 20 s~v~~a~~~~~~------g~~LDlgcG~GRNalyLA~~G----~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~ 89 (192)
T PF03848_consen 20 SEVLEAVPLLKP------GKALDLGCGEGRNALYLASQG----FDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDF 89 (192)
T ss_dssp HHHHHHCTTS-S------SEEEEES-TTSHHHHHHHHTT-----EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCB
T ss_pred HHHHHHHhhcCC------CcEEEcCCCCcHHHHHHHHCC----CeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhc
Confidence 679999999863 489999977776554555444 66777777763 3345666543 32 2567773 4
Q ss_pred CCCCcCCCCceeEEeccchhhhHHHHHHHHHHHhhcccC
Q 011332 149 PLPYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARVSVD 187 (488)
Q Consensus 149 ~~~~r~~sfs~~~vsd~~Dyl~~~YLn~~L~ai~ra~~d 187 (488)
.+| ..|.+++-+....|+-+..+.+++..|..+..-
T Consensus 90 ~~~---~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~p 125 (192)
T PF03848_consen 90 DFP---EEYDFIVSTVVFMFLQRELRPQIIENMKAATKP 125 (192)
T ss_dssp S-T---TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEE
T ss_pred ccc---CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCC
Confidence 433 457654434668899888888888888555444
No 103
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=23.69 E-value=99 Score=32.26 Aligned_cols=62 Identities=16% Similarity=0.145 Sum_probs=38.9
Q ss_pred ChHHHHHHHHcCCCeEeeec-ccc-ccccCCCCCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCC
Q 011332 318 YKEDVKLMAKTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLP 382 (488)
Q Consensus 318 ykeDI~LmkelGvnayRFSI-sWs-RI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~DlP 382 (488)
=++.++.|+++|+|...+++ +-. +++-. -|.. ...+-+.+.|+.+++.|++++-.-.-+.+|
T Consensus 99 t~e~l~~l~~~Gv~risiGvqS~~~~~l~~-lgR~--~~~~~~~~ai~~l~~~G~~~v~~dli~GlP 162 (360)
T TIGR00539 99 TAEWCKGLKGAGINRLSLGVQSFRDDKLLF-LGRQ--HSAKNIAPAIETALKSGIENISLDLMYGLP 162 (360)
T ss_pred CHHHHHHHHHcCCCEEEEecccCChHHHHH-hCCC--CCHHHHHHHHHHHHHcCCCeEEEeccCCCC
Confidence 36889999999998665555 332 23322 1211 124556678889999999866444455666
No 104
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=23.65 E-value=4e+02 Score=26.75 Aligned_cols=114 Identities=20% Similarity=0.244 Sum_probs=66.9
Q ss_pred hhhhHHHHHh-cccccceeEeCCchhHH---Hhhhhccccc--cccCCCccccccchhhhhhhhhhcc------------
Q 011332 79 RALPVLKKAY-GDSMLKVLHVGPETCSV---VSKLLKEEDT--EAWGVEPYDLDDADANCRSLVRKGI------------ 140 (488)
Q Consensus 79 ~~~~~~~~~~-~~~~~~~l~~~p~~~~~---~~~~~~~~~~--~~~g~~p~~~~~~~~~~~~~~~~g~------------ 140 (488)
..+|-|.+.= ...-.+||-+|=.|-.- ++-+|.|... ..|+++ ..-.|.+..+-...|+|+
T Consensus 86 ~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~-I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~ 164 (264)
T smart00138 86 KVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVK-ILATDIDLKALEKARAGIYPERELEDLPKA 164 (264)
T ss_pred HHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeE-EEEEECCHHHHHHHHcCCCCHHHHhcCCHH
Confidence 3467665431 22336899998766642 3444444321 234433 222344555555555554
Q ss_pred ----------------------e--eeccccCCCCCcCCCCceeEEeccchhhhHHHHHHHHHHHhhcccCCcEEeec
Q 011332 141 ----------------------V--RVADIKFPLPYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARVSVDGVVIFAG 194 (488)
Q Consensus 141 ----------------------~--~~~d~~~~~~~r~~sfs~~~vsd~~Dyl~~~YLn~~L~ai~ra~~dGv~V~~G 194 (488)
| ++.|+-- +|+...+|.++...+-+-|+.+.-..+++..+.++...|-.+..|
T Consensus 165 ~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~-~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 165 LLARYFSRVEDKYRVKPELKERVRFAKHNLLA-ESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred HHhhhEEeCCCeEEEChHHhCcCEEeeccCCC-CCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 1 2344433 344567899998888888887777778888888888887555534
No 105
>PLN00196 alpha-amylase; Provisional
Probab=23.32 E-value=1e+02 Score=33.54 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=43.7
Q ss_pred ccccChHHHHHHHHcCCCeEeeeccccccccCCCC-----CCCh---hHHHHHHHHHHHHHHCCCcceEee
Q 011332 314 EYHKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRG-----PVNP---KGLQYYNNLINELISYGIQPHVTL 376 (488)
Q Consensus 314 ~Y~rykeDI~LmkelGvnayRFSIsWsRI~P~G~G-----~vN~---egv~~Y~~lId~L~~~GIeP~VTL 376 (488)
.|....+.+.-+++||+++.=++-.....-+.|-. .+|+ -..+=++++|+++.++||++++..
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 46667888999999999998777654433222211 1221 113458899999999999999875
No 106
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=23.00 E-value=65 Score=33.77 Aligned_cols=34 Identities=41% Similarity=0.555 Sum_probs=21.4
Q ss_pred CCCCCCccccccccccCCCCCchhHHHHHHHHHhh
Q 011332 12 LADGGSIPFVGSAHSKSRSSPLLSVILLAVGAVLL 46 (488)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (488)
.|+.|.+ -..+-.|||-|+.|++|.|+|-+.+|+
T Consensus 257 LGe~Gl~-~~SSnss~S~s~~l~piil~IG~vl~i 290 (305)
T PF04639_consen 257 LGENGLI-TKSSNSSKSVSDSLLPIILIIGGVLLI 290 (305)
T ss_pred cCccccc-ccccCccchhhhhhhHHHHHHHHHHHH
Confidence 3566633 333556788888999987766444443
No 107
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=22.22 E-value=53 Score=34.70 Aligned_cols=50 Identities=20% Similarity=0.359 Sum_probs=32.8
Q ss_pred ccChHHHHHHHHcCCCeEeeeccccccccCCCCCCChhHHHHHHHHHHHHHHCCCcceEeeccC
Q 011332 316 HKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHS 379 (488)
Q Consensus 316 ~rykeDI~LmkelGvnayRFSIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~ 379 (488)
+.++.|+.+||+||+|+.|.= -|-|+ .| .+..+..|-++||=.++.|...
T Consensus 53 ~~C~rDi~~l~~LgiNtIRVY----~vdp~----~n------Hd~CM~~~~~aGIYvi~Dl~~p 102 (314)
T PF03198_consen 53 EACKRDIPLLKELGINTIRVY----SVDPS----KN------HDECMSAFADAGIYVILDLNTP 102 (314)
T ss_dssp HHHHHHHHHHHHHT-SEEEES-------TT----S--------HHHHHHHHHTT-EEEEES-BT
T ss_pred HHHHHhHHHHHHcCCCEEEEE----EeCCC----CC------HHHHHHHHHhCCCEEEEecCCC
Confidence 368999999999999999852 23343 22 3556777888999888888643
No 108
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=22.11 E-value=1.7e+02 Score=31.10 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=51.7
Q ss_pred HHHHHHcCCCeEeeeccccccccCCCCCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCc
Q 011332 322 VKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQ 383 (488)
Q Consensus 322 I~LmkelGvnayRFSIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~DlPq 383 (488)
++.+|++|.++..|=+=|. |+++..+|..-..|-+++.+++.+.+|--|+-+..+|.+.
T Consensus 111 ~~rike~GadavK~Llyy~---pD~~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~~ 169 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDEPDEINEQKKAYIERIGSECVAEDIPFFLEILTYDEKI 169 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCcc
Confidence 6889999999999887665 7766779999999999999999999999999888877654
No 109
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=22.03 E-value=1.3e+02 Score=29.89 Aligned_cols=59 Identities=22% Similarity=0.210 Sum_probs=45.8
Q ss_pred hHHHHHHHHcCCCeEeeeccccccccCC-CCCCChhHHHHHHHHHHHHHHCCCcceEeec
Q 011332 319 KEDVKLMAKTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLH 377 (488)
Q Consensus 319 keDI~LmkelGvnayRFSIsWsRI~P~G-~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~ 377 (488)
.+|++...+.|++..|+.++.+-+.=.. -+.=.++.++-..++++..+++|+++.+++.
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~ 131 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAE 131 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeec
Confidence 7899999999999999999888664221 1222356788889999999999998776664
No 110
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=21.88 E-value=2.4e+02 Score=30.53 Aligned_cols=84 Identities=17% Similarity=0.255 Sum_probs=61.4
Q ss_pred ccccChHHHHHHHHcCCCe---Eeeec-cccccc---cCCC-CCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCc-c
Q 011332 314 EYHKYKEDVKLMAKTGLDA---YRFSI-SWSRLI---PNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQ-A 384 (488)
Q Consensus 314 ~Y~rykeDI~LmkelGvna---yRFSI-sWsRI~---P~G~-G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~DlPq-w 384 (488)
.-..+++|++.+.+++.++ |-+.+ +|..+. +.|. -+-+++.++.|....+.|.++|. ...-+-||..|. -
T Consensus 202 T~~~~~~~l~~a~~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~~~~e 280 (416)
T COG0635 202 TLESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFAKPGGE 280 (416)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcCcchH
Confidence 3455899999999999877 55555 666553 2222 12235678999999999999999 788899999964 3
Q ss_pred cccccCCCccceee
Q 011332 385 LEDEYGGWINRMIV 398 (488)
Q Consensus 385 L~dkyGGWln~~iv 398 (488)
+.....||.+.+.+
T Consensus 281 ~~hNl~yw~~~~~l 294 (416)
T COG0635 281 CRHNLQYWETKDYL 294 (416)
T ss_pred HHhhhccccCCCeE
Confidence 33345799998765
No 111
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=21.59 E-value=66 Score=20.99 Aligned_cols=14 Identities=29% Similarity=0.631 Sum_probs=10.9
Q ss_pred HHHHHHHHHCCCcc
Q 011332 359 NNLINELISYGIQP 372 (488)
Q Consensus 359 ~~lId~L~~~GIeP 372 (488)
.++++.|++.||+|
T Consensus 21 ~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 21 LQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHhCCCC
Confidence 45777788889988
No 112
>PLN02389 biotin synthase
Probab=21.49 E-value=2.4e+02 Score=30.21 Aligned_cols=57 Identities=21% Similarity=0.213 Sum_probs=41.3
Q ss_pred cChHHHHHHHHcCCCeEeeeccccc-cccCCCCCCChhHHHHHHHHHHHHHHCCCcceEee
Q 011332 317 KYKEDVKLMAKTGLDAYRFSISWSR-LIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 376 (488)
Q Consensus 317 rykeDI~LmkelGvnayRFSIsWsR-I~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL 376 (488)
.-+|.++.||+.|++.|-.+++=++ ++|.-.. ....+.+-+.++.+++.||+...++
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~---~~s~e~rl~ti~~a~~~Gi~v~sg~ 233 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVIT---TRSYDDRLETLEAVREAGISVCSGG 233 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcCC---CCCHHHHHHHHHHHHHcCCeEeEEE
Confidence 4678999999999999998885233 5554211 1136777789999999999875553
No 113
>PRK07094 biotin synthase; Provisional
Probab=20.99 E-value=1.7e+02 Score=29.72 Aligned_cols=53 Identities=15% Similarity=0.150 Sum_probs=36.8
Q ss_pred ChHHHHHHHHcCCCeEeeecc-c-cccccCCCCCCChhHHHHHHHHHHHHHHCCCcce
Q 011332 318 YKEDVKLMAKTGLDAYRFSIS-W-SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH 373 (488)
Q Consensus 318 ykeDI~LmkelGvnayRFSIs-W-sRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~ 373 (488)
-+|+++.|+++|++.+-++++ - .+++..-.... ..+-+.+.++.+++.||.+.
T Consensus 128 ~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~---s~~~~~~~i~~l~~~Gi~v~ 182 (323)
T PRK07094 128 SYEEYKAWKEAGADRYLLRHETADKELYAKLHPGM---SFENRIACLKDLKELGYEVG 182 (323)
T ss_pred CHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCC---CHHHHHHHHHHHHHcCCeec
Confidence 478899999999999988883 3 24443311112 24667778899999998643
No 114
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=20.96 E-value=99 Score=29.53 Aligned_cols=85 Identities=14% Similarity=0.098 Sum_probs=55.1
Q ss_pred hhhhHHHHHhcccccceeEeCCchhHHHhhhhcc-ccccccCCCccc--cccchhhhhhhh-hhcceeeccccCCCC--C
Q 011332 79 RALPVLKKAYGDSMLKVLHVGPETCSVVSKLLKE-EDTEAWGVEPYD--LDDADANCRSLV-RKGIVRVADIKFPLP--Y 152 (488)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~-~~~~~~g~~p~~--~~~~~~~~~~~~-~~g~~~~~d~~~~~~--~ 152 (488)
...+-..+.+++.-.+||-+|-.+-.....|.+. ..++.+|||+.. ++.+..+++..- .+--+..+|+.-.+| +
T Consensus 28 ~~~~~~~~~~~~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~ 107 (202)
T PRK00121 28 PAPLDWAELFGNDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMF 107 (202)
T ss_pred CCCCCHHHHcCCCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHc
Confidence 4455567888888899999999999887777654 346789998875 444444443221 111245567711233 5
Q ss_pred cCCCCceeEEe
Q 011332 153 RAKSFSLVIVS 163 (488)
Q Consensus 153 r~~sfs~~~vs 163 (488)
...+|..+++.
T Consensus 108 ~~~~~D~V~~~ 118 (202)
T PRK00121 108 PDGSLDRIYLN 118 (202)
T ss_pred CccccceEEEE
Confidence 56789988875
No 115
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=20.95 E-value=2.3e+02 Score=28.23 Aligned_cols=92 Identities=22% Similarity=0.266 Sum_probs=53.1
Q ss_pred HHHHHhcccccceeEeCCchhHHHhhhhccc----cccccCCCccc--cccchhhhhhhhhhcceeeccccCCCCCcCCC
Q 011332 83 VLKKAYGDSMLKVLHVGPETCSVVSKLLKEE----DTEAWGVEPYD--LDDADANCRSLVRKGIVRVADIKFPLPYRAKS 156 (488)
Q Consensus 83 ~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~----~~~~~g~~p~~--~~~~~~~~~~~~~~g~~~~~d~~~~~~~r~~s 156 (488)
.|.+.....-.+||.||-.|-.....|.+.- ..+..|+++.. ++-+..++ ..--+.++|+. .||+...|
T Consensus 77 ~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----~~~~~~~~d~~-~lp~~~~s 151 (272)
T PRK11088 77 LLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----PQVTFCVASSH-RLPFADQS 151 (272)
T ss_pred HHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----CCCeEEEeecc-cCCCcCCc
Confidence 3444434444679999999998877765431 12567777642 11111110 01124677875 57888889
Q ss_pred CceeEEeccchhhhHHHHHHHHHHHhhcccCC
Q 011332 157 FSLVIVSDAVDYLSPKYLNRTLPELARVSVDG 188 (488)
Q Consensus 157 fs~~~vsd~~Dyl~~~YLn~~L~ai~ra~~dG 188 (488)
|.+++.... +. .++++.|+...|
T Consensus 152 fD~I~~~~~-----~~----~~~e~~rvLkpg 174 (272)
T PRK11088 152 LDAIIRIYA-----PC----KAEELARVVKPG 174 (272)
T ss_pred eeEEEEecC-----CC----CHHHHHhhccCC
Confidence 999986532 22 235566666664
No 116
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=20.67 E-value=50 Score=34.18 Aligned_cols=88 Identities=14% Similarity=0.147 Sum_probs=57.6
Q ss_pred eccccccccCCCCCCChhHHHHHHHHHHHHHHCCCcce--EeeccCCCCcccccccCCCccce--eeeeCCccccChhHH
Q 011332 336 SISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH--VTLHHSDLPQALEDEYGGWINRM--IVVANPLVYGDYPKI 411 (488)
Q Consensus 336 SIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~--VTL~H~DlPqwL~dkyGGWln~~--iv~~~Pi~fgdYp~~ 411 (488)
...|..++|. .|.+| .+-.+.+++-+.++||++- .-+.|--.|.|+... .-+...+ ... -..-+|-+.
T Consensus 43 ~~Kw~~~e~~-~g~~~---~~~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~---~~l~~~I~~ 114 (320)
T PF00331_consen 43 EMKWGSIEPE-PGRFN---FESADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELR---ARLENHIKT 114 (320)
T ss_dssp TTSHHHHESB-TTBEE----HHHHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHH---HHHHHHHHH
T ss_pred ccchhhhcCC-CCccC---ccchhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHH---HHHHHHHHH
Confidence 3679999998 68888 5667889999999999876 455687899999763 1122111 111 023567777
Q ss_pred HHHhhC--CCCCccchhhhhhc
Q 011332 412 MKQNAG--SRLPAFTDHESQQI 431 (488)
Q Consensus 412 m~~~~G--dRLP~FT~~E~~~l 431 (488)
|.++++ .++..|---++..-
T Consensus 115 v~~~y~~~g~i~~WDVvNE~i~ 136 (320)
T PF00331_consen 115 VVTRYKDKGRIYAWDVVNEAID 136 (320)
T ss_dssp HHHHTTTTTTESEEEEEES-B-
T ss_pred HHhHhccccceEEEEEeeeccc
Confidence 888888 48999988544333
No 117
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=20.30 E-value=2.2e+02 Score=29.50 Aligned_cols=89 Identities=12% Similarity=0.141 Sum_probs=56.2
Q ss_pred CCceeeecccCCcccCCCCccccccccChHHHHHHHHcCCCeEeeeccccccccCCC-CCCChhHHHHHHHHHHHHHHCC
Q 011332 291 TPSIWDTFAHAGNVLGNGDIACDEYHKYKEDVKLMAKTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYG 369 (488)
Q Consensus 291 g~SiWD~f~~~~~~~~~gd~a~D~Y~rykeDI~LmkelGvnayRFSIsWsRI~P~G~-G~vN~egv~~Y~~lId~L~~~G 369 (488)
|...|+.|...... ..+-.+.-.+..+++=|+..+++|+...=+---|..-.++.. .......-.--.++++--+++|
T Consensus 8 Gk~~W~Ww~~~~~~-~~~~~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~Kg 86 (273)
T PF10566_consen 8 GKAAWSWWSMHNGK-GVGFKHGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKG 86 (273)
T ss_dssp EEEEECTCCCCTTS-SBSS-BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT
T ss_pred ceEEEeecccCCCC-CCCCcCCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcC
Confidence 34678877643221 122234557889999999999999999999999987332211 1111111244567888899999
Q ss_pred CcceEeeccCC
Q 011332 370 IQPHVTLHHSD 380 (488)
Q Consensus 370 IeP~VTL~H~D 380 (488)
+.+++-.+|-+
T Consensus 87 Vgi~lw~~~~~ 97 (273)
T PF10566_consen 87 VGIWLWYHSET 97 (273)
T ss_dssp -EEEEEEECCH
T ss_pred CCEEEEEeCCc
Confidence 99999999877
No 118
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=20.29 E-value=1.7e+02 Score=30.68 Aligned_cols=93 Identities=12% Similarity=0.137 Sum_probs=55.3
Q ss_pred ceeEeCCchhHHHhhhhccccccccCCCccccccchhhhhhhhhh-cc-----eeeccccCCCCCcCCCCceeEEeccch
Q 011332 94 KVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRK-GI-----VRVADIKFPLPYRAKSFSLVIVSDAVD 167 (488)
Q Consensus 94 ~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~-g~-----~~~~d~~~~~~~r~~sfs~~~vsd~~D 167 (488)
+||-||-.+-.... .|.+.+.+.+|||+.. +.-..++.-.+. +. +..+|+. .||....+|..|+..+.+.
T Consensus 134 ~ILDIGCG~G~~s~-~La~~g~~V~GID~s~--~~i~~Ar~~~~~~~~~~~i~~~~~dae-~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 134 KFIDIGCGGGLLSE-PLARMGATVTGVDAVD--KNVKIARLHADMDPVTSTIEYLCTTAE-KLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred EEEEeeCCCCHHHH-HHHHcCCEEEEEeCCH--HHHHHHHHHHHhcCcccceeEEecCHH-HhhhccCCCCEEEEhhHHH
Confidence 79999998877544 4455567889998764 111122221111 11 2334432 3565567999999988777
Q ss_pred hhhHHHHHHHHHHHhhcccCCcEEe
Q 011332 168 YLSPKYLNRTLPELARVSVDGVVIF 192 (488)
Q Consensus 168 yl~~~YLn~~L~ai~ra~~dGv~V~ 192 (488)
++.. ..+.|.++.++...|-.++
T Consensus 210 Hv~d--~~~~L~~l~r~LkPGG~li 232 (322)
T PLN02396 210 HVAN--PAEFCKSLSALTIPNGATV 232 (322)
T ss_pred hcCC--HHHHHHHHHHHcCCCcEEE
Confidence 7632 2456666766666654444
Done!