Query 011333
Match_columns 488
No_of_seqs 278 out of 2102
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 00:11:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011333.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011333hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02919 haloacid dehalogenase 99.8 3.4E-17 7.4E-22 190.7 22.5 195 26-232 683-891 (1057)
2 PLN02919 haloacid dehalogenase 99.7 2.3E-16 5.1E-21 183.7 26.4 228 24-264 622-881 (1057)
3 KOG4659 Uncharacterized conser 99.5 6.3E-14 1.4E-18 158.1 13.5 183 39-229 423-691 (1899)
4 PF08450 SGL: SMP-30/Gluconola 99.4 1.9E-11 4.2E-16 119.5 18.9 145 79-258 82-243 (246)
5 KOG4659 Uncharacterized conser 99.4 1.2E-11 2.6E-16 140.1 18.5 160 66-230 390-562 (1899)
6 PF08450 SGL: SMP-30/Gluconola 99.3 7.1E-11 1.5E-15 115.5 14.6 154 84-273 41-213 (246)
7 COG3386 Gluconolactonase [Carb 98.8 2E-07 4.3E-12 95.6 17.0 141 80-250 108-265 (307)
8 COG3386 Gluconolactonase [Carb 98.8 2.9E-07 6.3E-12 94.4 17.5 154 84-273 68-243 (307)
9 TIGR02604 Piru_Ver_Nterm putat 98.7 5.7E-07 1.2E-11 94.0 19.3 145 76-249 7-193 (367)
10 KOG1520 Predicted alkaloid syn 98.6 4.5E-07 9.7E-12 94.2 12.2 136 84-250 116-275 (376)
11 PF01436 NHL: NHL repeat; Int 98.5 1.5E-07 3.2E-12 62.8 4.2 28 142-169 1-28 (28)
12 COG3391 Uncharacterized conser 98.5 6.2E-06 1.4E-10 86.8 18.2 145 83-258 116-270 (381)
13 COG3391 Uncharacterized conser 98.4 6.9E-06 1.5E-10 86.5 16.4 141 83-259 74-225 (381)
14 COG4257 Vgb Streptogramin lyas 98.4 6.4E-06 1.4E-10 82.5 13.8 134 82-250 61-199 (353)
15 COG4257 Vgb Streptogramin lyas 98.3 1.8E-05 3.9E-10 79.4 15.9 152 82-249 103-285 (353)
16 PF03088 Str_synth: Strictosid 98.3 2.5E-06 5.3E-11 72.3 7.8 65 87-170 2-85 (89)
17 TIGR02604 Piru_Ver_Nterm putat 98.2 2E-05 4.4E-10 82.4 15.1 128 84-230 125-301 (367)
18 PF10282 Lactonase: Lactonase, 98.2 4.6E-05 9.9E-10 78.9 16.8 145 82-250 143-302 (345)
19 PF01436 NHL: NHL repeat; Int 98.2 2.8E-06 6.1E-11 56.6 4.4 28 82-109 1-28 (28)
20 PRK11028 6-phosphogluconolacto 98.1 0.00018 3.9E-09 73.2 17.4 145 82-248 174-328 (330)
21 PF10282 Lactonase: Lactonase, 98.0 0.00011 2.5E-09 76.0 15.5 127 80-231 189-324 (345)
22 PF03088 Str_synth: Strictosid 98.0 2.4E-05 5.3E-10 66.3 8.2 68 146-230 1-88 (89)
23 KOG1214 Nidogen and related ba 97.9 0.00013 2.9E-09 81.4 14.3 147 69-250 1056-1208(1289)
24 PRK11028 6-phosphogluconolacto 97.9 0.00027 5.9E-09 71.9 14.2 121 83-229 80-205 (330)
25 TIGR03606 non_repeat_PQQ dehyd 97.8 0.002 4.4E-08 69.6 20.2 90 67-170 17-122 (454)
26 KOG1520 Predicted alkaloid syn 97.8 0.00097 2.1E-08 69.8 17.0 104 143-260 115-239 (376)
27 KOG1214 Nidogen and related ba 97.8 0.00022 4.7E-09 79.8 12.4 134 84-250 1026-1166(1289)
28 PF07995 GSDH: Glucose / Sorbo 97.6 0.00098 2.1E-08 69.0 14.5 126 82-231 1-158 (331)
29 TIGR03866 PQQ_ABC_repeats PQQ- 97.4 0.012 2.5E-07 57.2 17.5 136 84-247 158-298 (300)
30 COG2706 3-carboxymuconate cycl 97.2 0.029 6.3E-07 58.2 19.0 145 80-248 188-343 (346)
31 PF06977 SdiA-regulated: SdiA- 97.1 0.0017 3.7E-08 64.9 8.3 77 82-169 170-247 (248)
32 PF03022 MRJP: Major royal jel 97.0 0.037 8.1E-07 56.4 16.8 152 84-249 2-243 (287)
33 TIGR03866 PQQ_ABC_repeats PQQ- 96.9 0.071 1.5E-06 51.7 17.9 118 94-249 1-124 (300)
34 PF06977 SdiA-regulated: SdiA- 96.9 0.013 2.9E-07 58.6 12.2 124 85-226 120-247 (248)
35 PF05787 DUF839: Bacterial pro 96.8 0.014 3E-07 64.4 13.0 83 80-162 347-455 (524)
36 TIGR03118 PEPCTERM_chp_1 conse 96.7 0.041 8.9E-07 56.5 13.9 116 86-229 141-279 (336)
37 TIGR02658 TTQ_MADH_Hv methylam 96.4 0.13 2.8E-06 54.1 16.3 113 94-233 13-140 (352)
38 KOG4499 Ca2+-binding protein R 96.3 0.024 5.2E-07 56.3 9.7 82 84-174 159-245 (310)
39 KOG4499 Ca2+-binding protein R 96.3 0.16 3.5E-06 50.6 15.0 79 142-231 157-243 (310)
40 TIGR03606 non_repeat_PQQ dehyd 96.2 0.12 2.7E-06 56.0 15.4 30 197-227 228-260 (454)
41 COG2706 3-carboxymuconate cycl 96.1 0.4 8.7E-06 50.0 17.8 163 84-275 146-323 (346)
42 PF07995 GSDH: Glucose / Sorbo 95.8 0.049 1.1E-06 56.5 9.8 78 142-231 1-92 (331)
43 PF02239 Cytochrom_D1: Cytochr 95.7 0.59 1.3E-05 49.4 17.4 135 85-249 39-181 (369)
44 PF13449 Phytase-like: Esteras 95.2 0.46 1E-05 49.1 14.5 134 84-230 86-252 (326)
45 COG2133 Glucose/sorbosone dehy 95.2 0.28 6E-06 52.4 13.0 134 82-230 238-398 (399)
46 PF01731 Arylesterase: Arylest 95.2 0.12 2.6E-06 43.6 8.3 29 142-170 53-82 (86)
47 PF02239 Cytochrom_D1: Cytochr 95.2 0.18 3.8E-06 53.3 11.3 99 95-230 7-109 (369)
48 TIGR03032 conserved hypothetic 95.1 1.4 3.1E-05 45.7 17.0 183 39-248 61-251 (335)
49 COG3211 PhoX Predicted phospha 94.9 0.26 5.7E-06 54.3 11.7 83 81-163 415-520 (616)
50 TIGR02658 TTQ_MADH_Hv methylam 94.8 0.58 1.3E-05 49.3 13.8 66 148-231 253-332 (352)
51 PF00058 Ldl_recept_b: Low-den 94.7 0.1 2.3E-06 37.8 5.8 41 94-152 1-42 (42)
52 PF03022 MRJP: Major royal jel 94.6 0.12 2.6E-06 52.7 8.0 64 84-160 187-253 (287)
53 PF02333 Phytase: Phytase; In 94.5 2.8 6.1E-05 44.7 18.0 110 141-265 154-282 (381)
54 COG2133 Glucose/sorbosone dehy 94.4 2.6 5.7E-05 45.2 17.6 160 82-264 66-260 (399)
55 COG3204 Uncharacterized protei 94.3 0.13 2.8E-06 52.6 7.3 67 85-161 235-302 (316)
56 TIGR03118 PEPCTERM_chp_1 conse 94.3 2.5 5.3E-05 43.8 16.4 137 80-231 20-172 (336)
57 KOG0266 WD40 repeat-containing 94.1 1 2.2E-05 48.7 14.3 113 85-232 206-321 (456)
58 smart00135 LY Low-density lipo 93.9 0.12 2.7E-06 36.1 4.6 29 142-170 8-37 (43)
59 COG3204 Uncharacterized protei 93.0 12 0.00027 38.6 21.4 148 82-250 128-294 (316)
60 PF01731 Arylesterase: Arylest 92.9 0.98 2.1E-05 38.1 9.2 33 198-230 53-85 (86)
61 smart00135 LY Low-density lipo 92.7 0.33 7.1E-06 33.8 5.3 35 197-231 7-41 (43)
62 PF05096 Glu_cyclase_2: Glutam 92.6 2.1 4.6E-05 43.4 12.8 111 84-230 46-158 (264)
63 PF05787 DUF839: Bacterial pro 92.5 1.2 2.7E-05 49.3 11.8 79 140-219 347-455 (524)
64 PRK02888 nitrous-oxide reducta 92.3 1.6 3.5E-05 49.2 12.5 82 143-230 321-405 (635)
65 PF13449 Phytase-like: Esteras 92.3 3.9 8.5E-05 42.2 14.7 31 144-174 86-123 (326)
66 KOG1215 Low-density lipoprotei 92.0 1.6 3.4E-05 51.2 12.6 135 82-250 479-621 (877)
67 PF00058 Ldl_recept_b: Low-den 91.6 0.74 1.6E-05 33.3 6.0 38 211-248 1-41 (42)
68 PF14269 Arylsulfotran_2: Aryl 91.5 4.7 0.0001 41.5 14.1 132 83-231 144-291 (299)
69 cd00200 WD40 WD40 domain, foun 91.3 4.6 0.0001 37.2 12.9 106 85-226 180-288 (289)
70 cd00200 WD40 WD40 domain, foun 89.8 16 0.00034 33.7 14.9 110 84-230 95-208 (289)
71 KOG0266 WD40 repeat-containing 89.3 13 0.00029 40.2 15.9 115 84-233 248-368 (456)
72 COG3211 PhoX Predicted phospha 88.3 5.3 0.00012 44.5 11.9 79 140-220 414-520 (616)
73 KOG0286 G-protein beta subunit 87.4 15 0.00032 38.0 13.6 111 85-229 189-303 (343)
74 KOG0291 WD40-repeat-containing 87.3 15 0.00033 42.1 14.8 112 83-229 351-466 (893)
75 PF06739 SBBP: Beta-propeller 87.3 0.47 1E-05 33.8 2.2 20 143-162 13-32 (38)
76 PRK02888 nitrous-oxide reducta 87.0 1.8 4E-05 48.7 7.6 76 82-170 320-402 (635)
77 KOG1446 Histone H3 (Lys4) meth 86.5 25 0.00055 36.4 14.8 119 84-230 142-263 (311)
78 PTZ00421 coronin; Provisional 86.2 51 0.0011 36.4 18.3 113 85-231 78-200 (493)
79 KOG3567 Peptidylglycine alpha- 85.7 2.3 5E-05 46.0 7.2 128 82-229 167-298 (501)
80 KOG0318 WD40 repeat stress pro 84.6 72 0.0016 35.5 19.5 111 83-232 364-476 (603)
81 PF05096 Glu_cyclase_2: Glutam 84.5 8.6 0.00019 39.1 10.4 126 84-229 131-261 (264)
82 PF06433 Me-amine-dh_H: Methyl 84.4 21 0.00045 37.7 13.4 108 94-231 3-128 (342)
83 TIGR02276 beta_rpt_yvtn 40-res 83.9 4.3 9.3E-05 28.2 5.8 39 209-247 2-41 (42)
84 KOG1215 Low-density lipoprotei 83.4 13 0.00028 43.6 12.9 134 85-252 439-579 (877)
85 TIGR02276 beta_rpt_yvtn 40-res 83.2 5.1 0.00011 27.8 6.0 20 94-113 4-23 (42)
86 TIGR03032 conserved hypothetic 82.8 3.5 7.5E-05 43.0 6.8 57 82-160 202-258 (335)
87 TIGR03300 assembly_YfgL outer 81.9 67 0.0015 33.2 17.2 57 93-170 65-121 (377)
88 KOG0279 G protein beta subunit 81.5 59 0.0013 33.5 14.7 112 86-230 67-181 (315)
89 PF06739 SBBP: Beta-propeller 81.5 2.8 6E-05 29.8 4.0 22 82-103 12-33 (38)
90 KOG0263 Transcription initiati 80.7 11 0.00025 42.9 10.4 109 87-231 540-651 (707)
91 PF07433 DUF1513: Protein of u 79.9 25 0.00055 36.5 12.0 103 84-219 6-119 (305)
92 PF14517 Tachylectin: Tachylec 79.2 27 0.00058 34.9 11.4 113 87-234 85-211 (229)
93 KOG0271 Notchless-like WD40 re 78.4 36 0.00078 36.5 12.5 118 87-235 120-241 (480)
94 PF02333 Phytase: Phytase; In 78.4 33 0.00072 36.7 12.6 76 82-170 207-288 (381)
95 KOG0289 mRNA splicing factor [ 78.3 1.1E+02 0.0024 33.4 16.2 111 84-229 349-462 (506)
96 KOG1446 Histone H3 (Lys4) meth 78.0 92 0.002 32.4 17.4 144 84-265 16-162 (311)
97 COG3823 Glutamine cyclotransfe 75.8 90 0.0019 31.2 17.1 71 153-227 185-257 (262)
98 PRK04792 tolB translocation pr 75.2 1.3E+02 0.0027 32.6 17.3 32 146-177 309-345 (448)
99 KOG0272 U4/U6 small nuclear ri 75.0 54 0.0012 35.4 12.8 112 84-230 305-419 (459)
100 KOG1408 WD40 repeat protein [F 74.8 29 0.00062 39.9 11.2 111 85-229 599-713 (1080)
101 KOG0281 Beta-TrCP (transducin 74.1 23 0.00049 37.5 9.6 125 88-234 241-393 (499)
102 PRK05137 tolB translocation pr 72.9 1.4E+02 0.003 31.9 16.9 73 87-178 250-330 (435)
103 PF13360 PQQ_2: PQQ-like domai 72.6 86 0.0019 29.5 14.1 65 89-174 32-98 (238)
104 COG3823 Glutamine cyclotransfe 72.5 8.9 0.00019 38.0 6.0 63 93-161 185-248 (262)
105 TIGR02800 propeller_TolB tol-p 71.2 1.3E+02 0.0029 31.1 17.5 27 87-113 238-267 (417)
106 PRK04922 tolB translocation pr 71.0 1.5E+02 0.0033 31.6 17.6 65 87-170 252-322 (433)
107 COG4946 Uncharacterized protei 71.0 1.2E+02 0.0026 33.6 14.4 25 88-112 281-305 (668)
108 KOG0289 mRNA splicing factor [ 70.3 78 0.0017 34.5 12.7 111 86-230 307-420 (506)
109 PRK11138 outer membrane biogen 69.8 77 0.0017 33.2 12.9 23 146-170 288-310 (394)
110 KOG1036 Mitotic spindle checkp 69.3 1.5E+02 0.0032 31.0 14.1 146 88-273 60-209 (323)
111 smart00284 OLF Olfactomedin-li 69.2 55 0.0012 33.2 11.0 77 86-174 77-163 (255)
112 PF14269 Arylsulfotran_2: Aryl 69.0 49 0.0011 34.0 10.9 87 142-233 143-244 (299)
113 PTZ00420 coronin; Provisional 68.1 2E+02 0.0044 32.5 16.2 121 84-233 76-201 (568)
114 KOG0772 Uncharacterized conser 67.3 46 0.001 36.9 10.5 125 83-231 318-458 (641)
115 PLN00181 protein SPA1-RELATED; 67.1 1.6E+02 0.0035 34.1 15.9 121 85-233 486-610 (793)
116 PRK01742 tolB translocation pr 67.0 1.8E+02 0.0039 31.0 16.4 74 86-178 207-288 (429)
117 PTZ00421 coronin; Provisional 65.2 2.2E+02 0.0048 31.4 19.0 68 85-170 128-196 (493)
118 PRK03629 tolB translocation pr 64.8 2E+02 0.0044 30.7 17.6 72 87-177 247-326 (429)
119 PTZ00420 coronin; Provisional 64.8 2.5E+02 0.0054 31.8 16.8 121 84-233 169-297 (568)
120 KOG0263 Transcription initiati 64.3 1.4E+02 0.003 34.4 13.9 38 142-179 535-575 (707)
121 PF14517 Tachylectin: Tachylec 64.3 1.5E+02 0.0033 29.6 12.8 111 85-230 36-160 (229)
122 COG4246 Uncharacterized protei 62.3 1.5E+02 0.0034 30.4 12.4 77 84-170 75-161 (340)
123 KOG0316 Conserved WD40 repeat- 59.3 1.8E+02 0.0038 29.7 12.1 81 142-229 182-268 (307)
124 PRK01742 tolB translocation pr 59.3 2.5E+02 0.0054 29.9 15.9 65 87-170 252-322 (429)
125 KOG0272 U4/U6 small nuclear ri 59.2 44 0.00095 36.1 8.4 116 84-235 263-381 (459)
126 PRK00178 tolB translocation pr 57.9 2.5E+02 0.0054 29.6 17.7 64 88-170 248-317 (430)
127 KOG0291 WD40-repeat-containing 57.5 3.7E+02 0.0081 31.5 15.9 76 142-235 350-428 (893)
128 KOG0315 G-protein beta subunit 56.9 2.4E+02 0.0051 29.0 13.4 118 84-235 42-160 (311)
129 KOG0318 WD40 repeat stress pro 56.5 3.3E+02 0.0072 30.6 19.2 92 143-251 321-417 (603)
130 PLN00181 protein SPA1-RELATED; 55.1 3.9E+02 0.0085 31.0 17.2 109 86-230 536-649 (793)
131 PRK01029 tolB translocation pr 53.9 3.1E+02 0.0067 29.4 14.8 74 87-177 285-366 (428)
132 PRK02889 tolB translocation pr 53.6 3E+02 0.0066 29.3 17.2 24 147-170 288-314 (427)
133 PRK11138 outer membrane biogen 52.9 2.9E+02 0.0063 28.8 16.4 24 88-113 116-139 (394)
134 PRK02889 tolB translocation pr 52.4 3.2E+02 0.0069 29.1 16.6 65 87-170 200-270 (427)
135 TIGR02800 propeller_TolB tol-p 52.3 2.9E+02 0.0063 28.6 14.6 25 146-170 325-352 (417)
136 KOG0285 Pleiotropic regulator 51.7 1.5E+02 0.0031 31.8 10.6 111 84-230 153-266 (460)
137 PRK04792 tolB translocation pr 51.4 3.4E+02 0.0075 29.2 19.1 65 87-170 222-292 (448)
138 KOG0308 Conserved WD40 repeat- 51.3 1.6E+02 0.0036 33.6 11.5 126 84-234 119-248 (735)
139 PRK03629 tolB translocation pr 50.7 3.4E+02 0.0074 29.0 18.9 31 147-177 247-282 (429)
140 KOG0292 Vesicle coat complex C 49.0 2E+02 0.0044 34.2 12.0 78 84-179 11-91 (1202)
141 KOG0640 mRNA cleavage stimulat 48.4 2.2E+02 0.0049 30.0 11.2 78 86-178 220-300 (430)
142 smart00108 B_lectin Bulb-type 47.3 1.1E+02 0.0025 26.2 8.0 52 85-164 55-106 (114)
143 PF05935 Arylsulfotrans: Aryls 47.3 2.9E+02 0.0064 30.2 12.9 39 143-181 271-312 (477)
144 KOG3567 Peptidylglycine alpha- 46.6 22 0.00047 38.9 3.8 114 142-263 167-298 (501)
145 PF02191 OLF: Olfactomedin-lik 46.2 2.1E+02 0.0047 28.7 10.7 82 86-173 72-157 (250)
146 KOG0278 Serine/threonine kinas 45.9 3.5E+02 0.0076 27.8 11.9 108 84-229 186-297 (334)
147 KOG0301 Phospholipase A2-activ 45.3 5.2E+02 0.011 29.9 14.3 106 84-229 181-288 (745)
148 KOG0292 Vesicle coat complex C 45.1 4.5E+02 0.0099 31.5 14.0 134 74-230 200-349 (1202)
149 TIGR03300 assembly_YfgL outer 45.0 3.6E+02 0.0079 27.7 15.1 22 147-170 274-295 (377)
150 KOG4378 Nuclear protein COP1 [ 44.9 2E+02 0.0044 32.0 10.7 65 146-230 212-281 (673)
151 cd00028 B_lectin Bulb-type man 44.2 1.2E+02 0.0026 26.1 7.7 24 84-107 55-78 (116)
152 KOG0319 WD40-repeat-containing 43.9 2.4E+02 0.0052 32.7 11.5 112 88-234 25-140 (775)
153 KOG0973 Histone transcription 42.4 5.5E+02 0.012 30.9 14.4 64 146-227 133-199 (942)
154 KOG1407 WD40 repeat protein [F 40.4 4.4E+02 0.0095 27.3 12.1 72 144-233 149-223 (313)
155 KOG0282 mRNA splicing factor [ 40.0 2.5E+02 0.0053 31.1 10.4 87 83-170 300-413 (503)
156 KOG2055 WD40 repeat protein [G 39.6 5.6E+02 0.012 28.3 13.3 23 148-170 309-331 (514)
157 KOG2055 WD40 repeat protein [G 39.6 2.3E+02 0.0049 31.3 10.0 25 89-113 310-334 (514)
158 PF13360 PQQ_2: PQQ-like domai 38.8 3.3E+02 0.0072 25.4 16.4 118 85-232 115-233 (238)
159 KOG0293 WD40 repeat-containing 38.0 3.9E+02 0.0085 29.2 11.4 112 82-230 312-426 (519)
160 KOG0282 mRNA splicing factor [ 37.5 1.4E+02 0.0029 33.0 8.1 106 93-232 226-333 (503)
161 KOG3881 Uncharacterized conser 37.4 1.3E+02 0.0027 32.4 7.7 86 145-248 205-299 (412)
162 KOG0286 G-protein beta subunit 37.2 5E+02 0.011 27.2 11.6 78 86-179 233-313 (343)
163 PF07494 Reg_prop: Two compone 36.4 39 0.00084 21.4 2.4 17 144-160 6-22 (24)
164 KOG0283 WD40 repeat-containing 36.2 4.2E+02 0.009 30.9 12.0 116 84-229 411-532 (712)
165 KOG0973 Histone transcription 36.1 5.3E+02 0.012 31.0 13.1 73 85-175 132-206 (942)
166 COG4247 Phy 3-phytase (myo-ino 35.5 5.2E+02 0.011 26.7 18.9 108 141-264 151-279 (364)
167 KOG1274 WD40 repeat protein [G 35.2 4.7E+02 0.01 31.2 12.3 68 93-179 65-136 (933)
168 PF05935 Arylsulfotrans: Aryls 34.9 1.9E+02 0.004 31.7 9.0 43 83-128 271-314 (477)
169 KOG1273 WD40 repeat protein [G 34.5 2.8E+02 0.0061 29.4 9.4 93 88-216 29-124 (405)
170 KOG0640 mRNA cleavage stimulat 33.4 2.8E+02 0.006 29.3 9.2 121 86-234 176-296 (430)
171 KOG0271 Notchless-like WD40 re 33.2 5.8E+02 0.013 27.7 11.7 30 84-113 159-188 (480)
172 KOG1274 WD40 repeat protein [G 32.8 6.6E+02 0.014 30.0 12.9 70 86-173 100-170 (933)
173 KOG0310 Conserved WD40 repeat- 31.9 6.5E+02 0.014 27.9 12.1 28 85-112 71-98 (487)
174 COG4946 Uncharacterized protei 30.1 8.2E+02 0.018 27.4 13.0 17 212-228 470-486 (668)
175 KOG0316 Conserved WD40 repeat- 29.8 5.5E+02 0.012 26.3 10.3 107 89-233 66-177 (307)
176 smart00108 B_lectin Bulb-type 29.7 3.2E+02 0.007 23.3 8.0 55 145-224 55-109 (114)
177 PRK00178 tolB translocation pr 29.6 6.8E+02 0.015 26.3 19.1 65 87-170 203-273 (430)
178 PF00400 WD40: WD domain, G-be 29.3 1.1E+02 0.0023 20.4 3.9 27 84-110 13-39 (39)
179 COG3490 Uncharacterized protei 28.9 6.5E+02 0.014 26.5 10.9 60 201-264 282-341 (366)
180 PRK04043 tolB translocation pr 28.6 7.6E+02 0.016 26.5 18.5 25 89-113 194-222 (419)
181 PF15416 DUF4623: Domain of un 27.8 2.7E+02 0.0059 29.7 8.1 80 82-170 182-269 (442)
182 KOG2110 Uncharacterized conser 27.5 8E+02 0.017 26.4 12.8 69 146-230 177-249 (391)
183 KOG0275 Conserved WD40 repeat- 26.3 8.1E+02 0.018 26.1 14.4 137 145-291 351-494 (508)
184 KOG0322 G-protein beta subunit 26.2 1.2E+02 0.0027 31.1 5.2 71 142-227 249-321 (323)
185 PRK13861 type IV secretion sys 25.9 1.6E+02 0.0034 30.5 6.1 37 73-111 77-115 (292)
186 PF07433 DUF1513: Protein of u 25.2 8E+02 0.017 25.6 15.2 157 69-249 87-267 (305)
187 PRK05137 tolB translocation pr 24.8 8.5E+02 0.018 25.8 19.6 65 87-170 206-276 (435)
188 KOG0303 Actin-binding protein 24.2 9.6E+02 0.021 26.2 13.2 115 86-232 177-297 (472)
189 PF01453 B_lectin: D-mannose b 23.6 3.4E+02 0.0073 23.6 7.0 55 85-165 20-74 (114)
190 cd00028 B_lectin Bulb-type man 22.8 4.1E+02 0.0089 22.8 7.4 55 145-224 56-110 (116)
191 KOG0278 Serine/threonine kinas 22.0 8.6E+02 0.019 25.1 10.1 70 84-170 223-295 (334)
192 KOG0308 Conserved WD40 repeat- 22.0 8.8E+02 0.019 28.1 11.2 110 85-220 174-286 (735)
193 PRK04922 tolB translocation pr 21.8 9.7E+02 0.021 25.4 19.5 64 88-170 209-278 (433)
194 KOG2919 Guanine nucleotide-bin 21.4 9.9E+02 0.021 25.5 10.7 28 84-112 160-187 (406)
195 PF02191 OLF: Olfactomedin-lik 20.8 8.6E+02 0.019 24.4 11.9 62 153-227 180-247 (250)
196 TIGR02608 delta_60_rpt delta-6 20.5 1.6E+02 0.0035 22.8 3.7 28 86-113 4-38 (55)
No 1
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.76 E-value=3.4e-17 Score=190.67 Aligned_cols=195 Identities=25% Similarity=0.347 Sum_probs=142.8
Q ss_pred CCCcceeccc---cccceeccceeEEeeecCcce--EEeCCCcccccCCceeEEeecCCCCCCCceEEEEccCCc-EEEE
Q 011333 26 ASPAKIVSGF---VSNGVSVLMKWLWSLKTTTKT--AITGRPMMKFESGYTVETVFDGSKLGIEPYSVEVLPGGE-LLIL 99 (488)
Q Consensus 26 s~P~~iv~g~---~~~~a~~~~~~i~~~~~~t~~--~iaG~~~~~~~dG~~~~~~~~G~~~l~~P~GIaVd~dG~-LYVa 99 (488)
..|..+.... ...+++..+++||.++..++. .++|.+.....+|.. .....+..|.||+++++|. |||+
T Consensus 683 n~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~-----~~~~~~~~P~GIavspdG~~LYVA 757 (1057)
T PLN02919 683 NSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSS-----GTSTSFAQPSGISLSPDLKELYIA 757 (1057)
T ss_pred CCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCc-----cccccccCccEEEEeCCCCEEEEE
Confidence 3555554433 234677888999988766554 345543222112211 1123456899999999987 9999
Q ss_pred ECCCCeEEEEeCCCCcccccEEEecCCC------CccccCCCcccccccCCcceEEEcCCCcEEEEECCCCEEEEEc-C-
Q 011333 100 DSANSNLYRISSSLSLYSRPKLVAGSAE------GYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKIS-D- 171 (488)
Q Consensus 100 D~~n~rI~kid~~g~~~g~i~tvaG~~~------G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~rIrkid-~- 171 (488)
|..+++|++++.++ +...+++|... ...|..+|.+..+.|++|.||++|++|+|||||+.|++|++|+ +
T Consensus 758 Ds~n~~Irv~D~~t---g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t 834 (1057)
T PLN02919 758 DSESSSIRALDLKT---GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT 834 (1057)
T ss_pred ECCCCeEEEEECCC---CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC
Confidence 99999999999875 34455554210 1223345666678899999999999999999999999999999 3
Q ss_pred CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 011333 172 SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD 232 (488)
Q Consensus 172 ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~ 232 (488)
+.+++++|.+. .|+.||....++|+.|.+|+ ++++|+|||+|++|++|++|++....
T Consensus 835 g~v~tiaG~G~---~G~~dG~~~~a~l~~P~GIa-vd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 835 KRVTTLAGTGK---AGFKDGKALKAQLSEPAGLA-LGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CeEEEEeccCC---cCCCCCcccccccCCceEEE-EeCCCCEEEEECCCCEEEEEECCCCc
Confidence 44788887421 45678888899999999999 78899999999999999999987643
No 2
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.74 E-value=2.3e-16 Score=183.75 Aligned_cols=228 Identities=17% Similarity=0.242 Sum_probs=157.0
Q ss_pred CCCCCcceeccc---cccceeccceeEEeeecCcce--EEeCCCcccc--cCCceeEEeecCCCCCCCceEEEEcc-CCc
Q 011333 24 SSASPAKIVSGF---VSNGVSVLMKWLWSLKTTTKT--AITGRPMMKF--ESGYTVETVFDGSKLGIEPYSVEVLP-GGE 95 (488)
Q Consensus 24 a~s~P~~iv~g~---~~~~a~~~~~~i~~~~~~t~~--~iaG~~~~~~--~dG~~~~~~~~G~~~l~~P~GIaVd~-dG~ 95 (488)
....|..+.... ...+++..++.|++++..+.. +++|++.... .+|.. .....++.|++|++++ +|.
T Consensus 622 ~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~-----~~~~~ln~P~gVa~dp~~g~ 696 (1057)
T PLN02919 622 TFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKK-----GTSQVLNSPWDVCFEPVNEK 696 (1057)
T ss_pred ccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChh-----hhHhhcCCCeEEEEecCCCe
Confidence 345577666543 234677788999988766544 5666654321 11111 0112367999999999 788
Q ss_pred EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCC-cccccccCCcceEEEcCCCc-EEEEECCCCEEEEEc--C
Q 011333 96 LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDG-KPREARMNHPKGLTVDDRGN-IYIADTMNMAIRKIS--D 171 (488)
Q Consensus 96 LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG-~a~~a~Ln~P~GIAvD~dG~-LYVAD~~N~rIrkid--~ 171 (488)
|||+|.++++|++++..+ +.+.+++|. |.....+| ....+.|+.|+||+++++|. |||+|..|++|++++ .
T Consensus 697 LyVad~~~~~I~v~d~~~---g~v~~~~G~--G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t 771 (1057)
T PLN02919 697 VYIAMAGQHQIWEYNISD---GVTRVFSGD--GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT 771 (1057)
T ss_pred EEEEECCCCeEEEEECCC---CeEEEEecC--CccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence 999999999999999876 556677765 22222222 23345789999999999986 999999999999999 3
Q ss_pred CCcEEEeCCccC-----CCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEEec---------
Q 011333 172 SGVTTIAGGKWG-----RGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQY--------- 237 (488)
Q Consensus 172 ggVttIaGg~~g-----~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~~~--------- 237 (488)
+++++++|+... ...|..+|....+.|..|.+|+ ++++|+|||+|++|++|++|++.+..+....
T Consensus 772 g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gva-vd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~d 850 (1057)
T PLN02919 772 GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVL-CAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKD 850 (1057)
T ss_pred CcEEEEEecccccCcccccccCCCCchhhhhccCCceee-EeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCC
Confidence 456666654221 1134456666778899999999 7899999999999999999999765443322
Q ss_pred ------cCCCcceEEEEecCCceEEEEEEEEec
Q 011333 238 ------GSSFPLGIAVLLAAGFFGYMLALLQRR 264 (488)
Q Consensus 238 ------~~g~P~GIav~~g~g~~Gy~~a~l~~~ 264 (488)
.+..|.||+++..+ .-|+......+
T Consensus 851 G~~~~a~l~~P~GIavd~dG--~lyVaDt~Nn~ 881 (1057)
T PLN02919 851 GKALKAQLSEPAGLALGENG--RLFVADTNNSL 881 (1057)
T ss_pred CcccccccCCceEEEEeCCC--CEEEEECCCCE
Confidence 12369999998542 23444433333
No 3
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.52 E-value=6.3e-14 Score=158.08 Aligned_cols=183 Identities=16% Similarity=0.265 Sum_probs=132.9
Q ss_pred ceeccceeEEeeecCcce-------EEeCCCccc--ccCCceeEEeecCCCCCCCceEEEEccCCcEEEEECCCCeEEEE
Q 011333 39 GVSVLMKWLWSLKTTTKT-------AITGRPMMK--FESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRI 109 (488)
Q Consensus 39 ~a~~~~~~i~~~~~~t~~-------~iaG~~~~~--~~dG~~~~~~~~G~~~l~~P~GIaVd~dG~LYVaD~~n~rI~ki 109 (488)
+.+...++||+++..... .++|++... +++. -.+...+..+.++.|.||++|.+|.||++|.. +|++|
T Consensus 423 vSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~des-CGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t--~IR~i 499 (1899)
T KOG4659|consen 423 VSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADES-CGDGALAQDAQLIFPKGIAFDKMGNLYFADGT--RIRVI 499 (1899)
T ss_pred ecCCCcceEEEeccCCccccccCeeEEeccCcCccccccc-cCcchhcccceeccCCceeEccCCcEEEeccc--EEEEe
Confidence 345667999998644333 677877643 2322 34444556677889999999999999999975 89999
Q ss_pred eCCCCcccccEEEecCCC-----------------------------------------------------------Cc-
Q 011333 110 SSSLSLYSRPKLVAGSAE-----------------------------------------------------------GY- 129 (488)
Q Consensus 110 d~~g~~~g~i~tvaG~~~-----------------------------------------------------------G~- 129 (488)
|.+| .++++.|+.. .+
T Consensus 500 D~~g----iIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~nvvlrit~~~rV~Ii~GrP~hC~ 575 (1899)
T KOG4659|consen 500 DTTG----IISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTNVVLRITVVHRVRIILGRPTHCD 575 (1899)
T ss_pred ccCc----eEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecceEEEEccCccEEEEcCCccccc
Confidence 9884 5566655421 00
Q ss_pred -cc---cCCCcccccccCCcceEEEcCCCcEEEEECCC---CEEEEEc-CCCcEEEeCCccCCCC---------CCCCCC
Q 011333 130 -SG---HVDGKPREARMNHPKGLTVDDRGNIYIADTMN---MAIRKIS-DSGVTTIAGGKWGRGG---------GHVDGP 192 (488)
Q Consensus 130 -~G---~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N---~rIrkid-~ggVttIaGg~~g~~~---------g~~dG~ 192 (488)
.| ..--.+..++|-.|..|||..+|.||||++.. +|||++. +|++..+||++..++| ..+++.
T Consensus 576 ~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~ 655 (1899)
T KOG4659|consen 576 LANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVA 655 (1899)
T ss_pred cCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchh
Confidence 00 00001334456677888888999999999875 6788888 7779999998765533 123567
Q ss_pred cccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333 193 SEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH 229 (488)
Q Consensus 193 ~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~ 229 (488)
+++|+|+.|..+| |.++|.|||||.+|-||++++..
T Consensus 656 At~A~lnsp~ala-VsPdg~v~IAD~gN~rIr~Vs~~ 691 (1899)
T KOG4659|consen 656 ATQAKLNSPYALA-VSPDGDVIIADSGNSRIRKVSAR 691 (1899)
T ss_pred hhccccCCcceEE-ECCCCcEEEecCCchhhhhhhhc
Confidence 8999999999999 89999999999999999998755
No 4
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.40 E-value=1.9e-11 Score=119.45 Aligned_cols=145 Identities=23% Similarity=0.252 Sum_probs=103.4
Q ss_pred CCCCCCceEEEEccCCcEEEEECCC--------CeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEE
Q 011333 79 SKLGIEPYSVEVLPGGELLILDSAN--------SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTV 150 (488)
Q Consensus 79 ~~~l~~P~GIaVd~dG~LYVaD~~n--------~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAv 150 (488)
...+..|++++++++|+|||+|... ++|+++++++ .+..+... |..|+||++
T Consensus 82 ~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~----~~~~~~~~----------------~~~pNGi~~ 141 (246)
T PF08450_consen 82 GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDG----KVTVVADG----------------LGFPNGIAF 141 (246)
T ss_dssp CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTS----EEEEEEEE----------------ESSEEEEEE
T ss_pred CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCC----eEEEEecC----------------cccccceEE
Confidence 3367799999999999999999765 5799999983 44444332 788999999
Q ss_pred cCCCc-EEEEECCCCEEEEEc-C--CC-c---EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCe
Q 011333 151 DDRGN-IYIADTMNMAIRKIS-D--SG-V---TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRA 222 (488)
Q Consensus 151 D~dG~-LYVAD~~N~rIrkid-~--gg-V---ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~r 222 (488)
+++|+ |||+|+.+++|.+++ + +. + .+++.... ....|-|++ +|.+|+|||++.++++
T Consensus 142 s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~--------------~~g~pDG~~-vD~~G~l~va~~~~~~ 206 (246)
T PF08450_consen 142 SPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG--------------GPGYPDGLA-VDSDGNLWVADWGGGR 206 (246)
T ss_dssp ETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS--------------SSCEEEEEE-EBTTS-EEEEEETTTE
T ss_pred CCcchheeecccccceeEEEeccccccceeeeeeEEEcCC--------------CCcCCCcce-EcCCCCEEEEEcCCCE
Confidence 99996 999999999999999 2 33 2 22322111 013588999 8999999999999999
Q ss_pred EEEEEcCCCceEEe-ccCCCcceEEEEecCCceEEEE
Q 011333 223 IREIQLHFDDCAYQ-YGSSFPLGIAVLLAAGFFGYML 258 (488)
Q Consensus 223 IrkI~~~g~~~~~~-~~~g~P~GIav~~g~g~~Gy~~ 258 (488)
|++++++|...... .....|..+++.....-.-|+.
T Consensus 207 I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 207 IVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred EEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 99999998755533 3334788888743333444443
No 5
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.38 E-value=1.2e-11 Score=140.07 Aligned_cols=160 Identities=24% Similarity=0.312 Sum_probs=114.0
Q ss_pred ccCCceeEEeecCCCCCCCceEEEEcc-CCcEEEEECCCCeEEEEeCCCCc--ccccEEEecCCC------CccccCCCc
Q 011333 66 FESGYTVETVFDGSKLGIEPYSVEVLP-GGELLILDSANSNLYRISSSLSL--YSRPKLVAGSAE------GYSGHVDGK 136 (488)
Q Consensus 66 ~~dG~~~~~~~~G~~~l~~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~--~g~i~tvaG~~~------G~~G~~dG~ 136 (488)
+.+|...+..--+...-.+-+.||++| +|.|||+|...++|+|+..-..+ -....++||.+. ..||+ .+.
T Consensus 390 ~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGD-Gal 468 (1899)
T KOG4659|consen 390 SQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGD-GAL 468 (1899)
T ss_pred cCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCc-chh
Confidence 345544444333333344678999999 99999999999999999643111 245678998762 23563 345
Q ss_pred ccccccCCcceEEEcCCCcEEEEECCCCEEEEEcC-CCcEEEeCCccCC--CCCCCCC-CcccccCCCCCeeEEECCCCe
Q 011333 137 PREARMNHPKGLTVDDRGNIYIADTMNMAIRKISD-SGVTTIAGGKWGR--GGGHVDG-PSEDAKFSNDFDVVYIGSSCS 212 (488)
Q Consensus 137 a~~a~Ln~P~GIAvD~dG~LYVAD~~N~rIrkid~-ggVttIaGg~~g~--~~g~~dG-~~~~a~f~~P~gIa~vd~~G~ 212 (488)
|.+|+|..|.|||||.+|+||+||. .+||++|. |-|+|+.|...-. .-.+..+ ...+.+|.+|.++|+.+-++.
T Consensus 469 A~dA~L~~PkGIa~dk~g~lYfaD~--t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdns 546 (1899)
T KOG4659|consen 469 AQDAQLIFPKGIAFDKMGNLYFADG--TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNS 546 (1899)
T ss_pred cccceeccCCceeEccCCcEEEecc--cEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCe
Confidence 8899999999999999999999995 89999994 5588888743211 0112222 445678999999997777999
Q ss_pred EEEEECCCCeEEEEEcCC
Q 011333 213 LLVIDRGNRAIREIQLHF 230 (488)
Q Consensus 213 LYVaD~gN~rIrkI~~~g 230 (488)
|||.| ||.|.+|+.+.
T Consensus 547 l~Vld--~nvvlrit~~~ 562 (1899)
T KOG4659|consen 547 LLVLD--TNVVLRITVVH 562 (1899)
T ss_pred EEEee--cceEEEEccCc
Confidence 99999 45666666554
No 6
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.27 E-value=7.1e-11 Score=115.47 Aligned_cols=154 Identities=22% Similarity=0.339 Sum_probs=105.2
Q ss_pred CceEEEEc-cCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECC
Q 011333 84 EPYSVEVL-PGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM 162 (488)
Q Consensus 84 ~P~GIaVd-~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~ 162 (488)
.|.|++++ ++|.|||++.. .+.+++..+ +.+..++....+ ...++.|+++++|++|+|||+|..
T Consensus 41 ~~~G~~~~~~~g~l~v~~~~--~~~~~d~~~---g~~~~~~~~~~~----------~~~~~~~ND~~vd~~G~ly~t~~~ 105 (246)
T PF08450_consen 41 GPNGMAFDRPDGRLYVADSG--GIAVVDPDT---GKVTVLADLPDG----------GVPFNRPNDVAVDPDGNLYVTDSG 105 (246)
T ss_dssp SEEEEEEECTTSEEEEEETT--CEEEEETTT---TEEEEEEEEETT----------CSCTEEEEEEEE-TTS-EEEEEEC
T ss_pred CCceEEEEccCCEEEEEEcC--ceEEEecCC---CcEEEEeeccCC----------CcccCCCceEEEcCCCCEEEEecC
Confidence 49999999 79999999975 445558775 456666543110 124888999999999999999986
Q ss_pred C--------CEEEEEcCC-CcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 011333 163 N--------MAIRKISDS-GVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC 233 (488)
Q Consensus 163 N--------~rIrkid~g-gVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~ 233 (488)
. .+|.+++.+ .+..+.. .+..|+||++..+...|||+|+.+++|++++++....
T Consensus 106 ~~~~~~~~~g~v~~~~~~~~~~~~~~-----------------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~ 168 (246)
T PF08450_consen 106 GGGASGIDPGSVYRIDPDGKVTVVAD-----------------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG 168 (246)
T ss_dssp CBCTTCGGSEEEEEEETTSEEEEEEE-----------------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC
T ss_pred CCccccccccceEEECCCCeEEEEec-----------------CcccccceEECCcchheeecccccceeEEEecccccc
Confidence 4 568888844 4555442 2668999996555557999999999999999975332
Q ss_pred -----E-E---eccCCCcceEEEEecCCceEEEEEEEEeccceEEeccC
Q 011333 234 -----A-Y---QYGSSFPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQN 273 (488)
Q Consensus 234 -----~-~---~~~~g~P~GIav~~g~g~~Gy~~a~l~~~~g~~~~s~~ 273 (488)
. . ....+.|+|++++.. |.++...-..-++.+.+++
T Consensus 169 ~~~~~~~~~~~~~~~g~pDG~~vD~~----G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 169 ELSNRRVFIDFPGGPGYPDGLAVDSD----GNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp CEEEEEEEEE-SSSSCEEEEEEEBTT----S-EEEEEETTTEEEEEETT
T ss_pred ceeeeeeEEEcCCCCcCCCcceEcCC----CCEEEEEcCCCEEEEECCC
Confidence 1 1 122246999999954 5555554444455555544
No 7
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.79 E-value=2e-07 Score=95.64 Aligned_cols=141 Identities=18% Similarity=0.157 Sum_probs=96.2
Q ss_pred CCCCCceEEEEccCCcEEEEECC-----------CCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceE
Q 011333 80 KLGIEPYSVEVLPGGELLILDSA-----------NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGL 148 (488)
Q Consensus 80 ~~l~~P~GIaVd~dG~LYVaD~~-----------n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GI 148 (488)
..++.|+.+.++++|.+||.|.. .++|+++++.+ +.+..+.+. +..|+||
T Consensus 108 ~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g---~~~~l~~~~----------------~~~~NGl 168 (307)
T COG3386 108 LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDG---GVVRLLDDD----------------LTIPNGL 168 (307)
T ss_pred CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCC---CEEEeecCc----------------EEecCce
Confidence 33579999999999999999987 25799999864 233444332 6779999
Q ss_pred EEcCCC-cEEEEECCCCEEEEEc-CC-CcEEEeCCccCC-CCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC-CeE
Q 011333 149 TVDDRG-NIYIADTMNMAIRKIS-DS-GVTTIAGGKWGR-GGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN-RAI 223 (488)
Q Consensus 149 AvD~dG-~LYVAD~~N~rIrkid-~g-gVttIaGg~~g~-~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN-~rI 223 (488)
|+++|| .+|++|+..++|.+++ +. .+.. ++.... .+.... -.|-|++ +|.+|+||++-..+ .+|
T Consensus 169 a~SpDg~tly~aDT~~~~i~r~~~d~~~g~~--~~~~~~~~~~~~~--------G~PDG~~-vDadG~lw~~a~~~g~~v 237 (307)
T COG3386 169 AFSPDGKTLYVADTPANRIHRYDLDPATGPI--GGRRGFVDFDEEP--------GLPDGMA-VDADGNLWVAAVWGGGRV 237 (307)
T ss_pred EECCCCCEEEEEeCCCCeEEEEecCcccCcc--CCcceEEEccCCC--------CCCCceE-EeCCCCEEEecccCCceE
Confidence 999999 7999999999999998 42 1100 010000 000001 2578888 89999999655544 499
Q ss_pred EEEEcCCCceEEeccC-CCcceEEEEec
Q 011333 224 REIQLHFDDCAYQYGS-SFPLGIAVLLA 250 (488)
Q Consensus 224 rkI~~~g~~~~~~~~~-g~P~GIav~~g 250 (488)
.+++++|.......-- ..|...|+...
T Consensus 238 ~~~~pdG~l~~~i~lP~~~~t~~~FgG~ 265 (307)
T COG3386 238 VRFNPDGKLLGEIKLPVKRPTNPAFGGP 265 (307)
T ss_pred EEECCCCcEEEEEECCCCCCccceEeCC
Confidence 9999997644433222 55667776644
No 8
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.77 E-value=2.9e-07 Score=94.43 Aligned_cols=154 Identities=17% Similarity=0.198 Sum_probs=101.9
Q ss_pred CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333 84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 163 (488)
Q Consensus 84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N 163 (488)
.+.++.++..|.|++++.+- ++++.+.+ +.++.++-.. ...+++.|+++.+|++|.+||.|..+
T Consensus 68 ~~~~~~~d~~g~Lv~~~~g~---~~~~~~~~--~~~t~~~~~~-----------~~~~~~r~ND~~v~pdG~~wfgt~~~ 131 (307)
T COG3386 68 FSSGALIDAGGRLIACEHGV---RLLDPDTG--GKITLLAEPE-----------DGLPLNRPNDGVVDPDGRIWFGDMGY 131 (307)
T ss_pred cccceeecCCCeEEEEcccc---EEEeccCC--ceeEEecccc-----------CCCCcCCCCceeEcCCCCEEEeCCCc
Confidence 36788899999999999864 33333321 2224444331 12457999999999999999999872
Q ss_pred -----------CEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC--
Q 011333 164 -----------MAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH-- 229 (488)
Q Consensus 164 -----------~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~-- 229 (488)
.+|++++ .+++..+... .+..|+|||+.++...||++|+..++|++++.+
T Consensus 132 ~~~~~~~~~~~G~lyr~~p~g~~~~l~~~----------------~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~ 195 (307)
T COG3386 132 FDLGKSEERPTGSLYRVDPDGGVVRLLDD----------------DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPA 195 (307)
T ss_pred cccCccccCCcceEEEEcCCCCEEEeecC----------------cEEecCceEECCCCCEEEEEeCCCCeEEEEecCcc
Confidence 3588888 5555554432 266899999655444999999999999999887
Q ss_pred -CCce----EE--eccCCCcceEEEEecCCceEEEE-EEEEeccceEEeccC
Q 011333 230 -FDDC----AY--QYGSSFPLGIAVLLAAGFFGYML-ALLQRRVGTIVSSQN 273 (488)
Q Consensus 230 -g~~~----~~--~~~~g~P~GIav~~g~g~~Gy~~-a~l~~~~g~~~~s~~ 273 (488)
+... .. ....+.|+|+++|.. |++| +......+..+.+..
T Consensus 196 ~g~~~~~~~~~~~~~~~G~PDG~~vDad----G~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 196 TGPIGGRRGFVDFDEEPGLPDGMAVDAD----GNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred cCccCCcceEEEccCCCCCCCceEEeCC----CCEEEecccCCceEEEECCC
Confidence 2111 11 124489999999966 5555 333333344444444
No 9
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.75 E-value=5.7e-07 Score=93.98 Aligned_cols=145 Identities=17% Similarity=0.182 Sum_probs=95.1
Q ss_pred ecCCCCCCCceEEEEccCCcEEEEECCC------------CeEEEEeCCC--CcccccEEEecCCCCccccCCCcccccc
Q 011333 76 FDGSKLGIEPYSVEVLPGGELLILDSAN------------SNLYRISSSL--SLYSRPKLVAGSAEGYSGHVDGKPREAR 141 (488)
Q Consensus 76 ~~G~~~l~~P~GIaVd~dG~LYVaD~~n------------~rI~kid~~g--~~~g~i~tvaG~~~G~~G~~dG~a~~a~ 141 (488)
++....+.+|.+|++|++|+|||++..+ .+|++++... +...+.++++..
T Consensus 7 ~A~~p~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~---------------- 70 (367)
T TIGR02604 7 FAAEPLLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE---------------- 70 (367)
T ss_pred EECCCccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC----------------
Confidence 3445567899999999999999998532 3888886531 112233455432
Q ss_pred cCCcceEEEcCCCcEEEEECCCCEEEEEc--CC------CcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeE
Q 011333 142 MNHPKGLTVDDRGNIYIADTMNMAIRKIS--DS------GVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSL 213 (488)
Q Consensus 142 Ln~P~GIAvD~dG~LYVAD~~N~rIrkid--~g------gVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~L 213 (488)
|+.|+||++.++| |||++. .+|.++. ++ ..++++.+-... + ......+++++ ++++|.|
T Consensus 71 l~~p~Gi~~~~~G-lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~-----~----~~~~~~~~~l~-~gpDG~L 137 (367)
T TIGR02604 71 LSMVTGLAVAVGG-VYVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQ-----I----NNHHHSLNSLA-WGPDGWL 137 (367)
T ss_pred CCCccceeEecCC-EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCC-----C----CcccccccCce-ECCCCCE
Confidence 7789999999999 999985 5788874 22 333444321100 0 00134588998 7899999
Q ss_pred EEEECCC-------------------CeEEEEEcCCCceE-EeccCCCcceEEEEe
Q 011333 214 LVIDRGN-------------------RAIREIQLHFDDCA-YQYGSSFPLGIAVLL 249 (488)
Q Consensus 214 YVaD~gN-------------------~rIrkI~~~g~~~~-~~~~~g~P~GIav~~ 249 (488)
||++..+ +.|+++++++.... +..+...|.|++++.
T Consensus 138 Yv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~ 193 (367)
T TIGR02604 138 YFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDS 193 (367)
T ss_pred EEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECC
Confidence 9988732 46888888765433 334455677777764
No 10
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.58 E-value=4.5e-07 Score=94.20 Aligned_cols=136 Identities=15% Similarity=0.196 Sum_probs=98.5
Q ss_pred CceEEEEccCC-cEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECC
Q 011333 84 EPYSVEVLPGG-ELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM 162 (488)
Q Consensus 84 ~P~GIaVd~dG-~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~ 162 (488)
.|-||+++..| +|||||..- -+++|++.++ ....++... +| ..+.-.+++.||++|.||++|+.
T Consensus 116 RPLGl~f~~~ggdL~VaDAYl-GL~~V~p~g~---~a~~l~~~~-------~G----~~~kf~N~ldI~~~g~vyFTDSS 180 (376)
T KOG1520|consen 116 RPLGIRFDKKGGDLYVADAYL-GLLKVGPEGG---LAELLADEA-------EG----KPFKFLNDLDIDPEGVVYFTDSS 180 (376)
T ss_pred CcceEEeccCCCeEEEEecce-eeEEECCCCC---cceeccccc-------cC----eeeeecCceeEcCCCeEEEeccc
Confidence 89999999866 999999864 6889999973 344444432 22 35778899999999999999975
Q ss_pred C-----------------CEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEE
Q 011333 163 N-----------------MAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIR 224 (488)
Q Consensus 163 N-----------------~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIr 224 (488)
. +|+.+|| ..+++++ .-..|..|+||++..+...|.||++...||+
T Consensus 181 sk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~V----------------Lld~L~F~NGlaLS~d~sfvl~~Et~~~ri~ 244 (376)
T KOG1520|consen 181 SKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKV----------------LLDGLYFPNGLALSPDGSFVLVAETTTARIK 244 (376)
T ss_pred cccchhheEEeeecCCCccceEEecCcccchhh----------------hhhcccccccccCCCCCCEEEEEeeccceee
Confidence 3 2444444 1222211 1124788999997777778999999999999
Q ss_pred EEEcCCCceE---Ee-c-cCCCcceEEEEec
Q 011333 225 EIQLHFDDCA---YQ-Y-GSSFPLGIAVLLA 250 (488)
Q Consensus 225 kI~~~g~~~~---~~-~-~~g~P~GIav~~g 250 (488)
++.+.|.... .+ . --|.|++|..+..
T Consensus 245 rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~ 275 (376)
T KOG1520|consen 245 RYWIKGPKAGTSEVFAEGLPGYPDNIRRDST 275 (376)
T ss_pred eeEecCCccCchhhHhhcCCCCCcceeECCC
Confidence 9999986442 22 2 3478999999943
No 11
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.50 E-value=1.5e-07 Score=62.76 Aligned_cols=28 Identities=43% Similarity=0.772 Sum_probs=26.5
Q ss_pred cCCcceEEEcCCCcEEEEECCCCEEEEE
Q 011333 142 MNHPKGLTVDDRGNIYIADTMNMAIRKI 169 (488)
Q Consensus 142 Ln~P~GIAvD~dG~LYVAD~~N~rIrki 169 (488)
|+.|.|||+|++|+|||||+.||||+++
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 6789999999999999999999999986
No 12
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=6.2e-06 Score=86.80 Aligned_cols=145 Identities=22% Similarity=0.344 Sum_probs=100.1
Q ss_pred CCceEEEEccCC-cEEEEEC--CCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEE
Q 011333 83 IEPYSVEVLPGG-ELLILDS--ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYI 158 (488)
Q Consensus 83 ~~P~GIaVd~dG-~LYVaD~--~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYV 158 (488)
..|.+++++++| .+||+|. .++.|.+++..+.. +... . + .| ..|.+++++++|+ +||
T Consensus 116 ~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~---~~~~-~-~---vG-----------~~P~~~a~~p~g~~vyv 176 (381)
T COG3391 116 LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK---VTAT-I-P---VG-----------NTPTGVAVDPDGNKVYV 176 (381)
T ss_pred cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCe---EEEE-E-e---cC-----------CCcceEEECCCCCeEEE
Confidence 489999999987 6999999 57999999998632 1111 1 1 01 1589999999998 999
Q ss_pred EECCCCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCe-EEEEECCC--CeEEEEEcCCCceEE
Q 011333 159 ADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCS-LLVIDRGN--RAIREIQLHFDDCAY 235 (488)
Q Consensus 159 AD~~N~rIrkid~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~-LYVaD~gN--~rIrkI~~~g~~~~~ 235 (488)
+|..+++|..++..+...+-+. .. .....+..|.+++ ++++|. +||++..+ +.|.+++........
T Consensus 177 ~~~~~~~v~vi~~~~~~v~~~~-~~---------~~~~~~~~P~~i~-v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~ 245 (381)
T COG3391 177 TNSDDNTVSVIDTSGNSVVRGS-VG---------SLVGVGTGPAGIA-VDPDGNRVYVANDGSGSNNVLKIDTATGNVTA 245 (381)
T ss_pred EecCCCeEEEEeCCCcceeccc-cc---------cccccCCCCceEE-ECCCCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence 9999999999995443333111 00 0123467899999 677675 99999988 699999988754443
Q ss_pred e--ccCC-CcceEEEEecCCceEEEE
Q 011333 236 Q--YGSS-FPLGIAVLLAAGFFGYML 258 (488)
Q Consensus 236 ~--~~~g-~P~GIav~~g~g~~Gy~~ 258 (488)
. .... .|.++++.. +|..-|+.
T Consensus 246 ~~~~~~~~~~~~v~~~p-~g~~~yv~ 270 (381)
T COG3391 246 TDLPVGSGAPRGVAVDP-AGKAAYVA 270 (381)
T ss_pred eccccccCCCCceeECC-CCCEEEEE
Confidence 2 1111 577777763 33444443
No 13
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=6.9e-06 Score=86.48 Aligned_cols=141 Identities=20% Similarity=0.211 Sum_probs=100.4
Q ss_pred CCceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCC-cEEEEE
Q 011333 83 IEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NIYIAD 160 (488)
Q Consensus 83 ~~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG-~LYVAD 160 (488)
..|.++++.++|. +|+++..+++|.+|+.+... +...... -..|.+++++++| .+||+|
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~---~~~~~~v----------------G~~P~~~~~~~~~~~vYV~n 134 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT---VLGSIPV----------------GLGPVGLAVDPDGKYVYVAN 134 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccc---eeeEeee----------------ccCCceEEECCCCCEEEEEe
Confidence 5899999999887 99999999999999965421 1111111 1269999999988 799999
Q ss_pred C--CCCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCe-EEEEECCCCeEEEEEcCCCceEE--
Q 011333 161 T--MNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCS-LLVIDRGNRAIREIQLHFDDCAY-- 235 (488)
Q Consensus 161 ~--~N~rIrkid~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~-LYVaD~gN~rIrkI~~~g~~~~~-- 235 (488)
. .++.|.+++...-..+.-...+ ..|.+++ ++++|. +||+|..+++|..|+..+.....
T Consensus 135 ~~~~~~~vsvid~~t~~~~~~~~vG---------------~~P~~~a-~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~ 198 (381)
T COG3391 135 AGNGNNTVSVIDAATNKVTATIPVG---------------NTPTGVA-VDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGS 198 (381)
T ss_pred cccCCceEEEEeCCCCeEEEEEecC---------------CCcceEE-ECCCCCeEEEEecCCCeEEEEeCCCcceeccc
Confidence 9 5799999994442222212211 1578999 677777 99999999999999988765552
Q ss_pred ----eccCCCcceEEEEecCCceEEEEE
Q 011333 236 ----QYGSSFPLGIAVLLAAGFFGYMLA 259 (488)
Q Consensus 236 ----~~~~g~P~GIav~~g~g~~Gy~~a 259 (488)
......|.+++++.. |-.-|+..
T Consensus 199 ~~~~~~~~~~P~~i~v~~~-g~~~yV~~ 225 (381)
T COG3391 199 VGSLVGVGTGPAGIAVDPD-GNRVYVAN 225 (381)
T ss_pred cccccccCCCCceEEECCC-CCEEEEEe
Confidence 333457899998744 33344433
No 14
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.37 E-value=6.4e-06 Score=82.51 Aligned_cols=134 Identities=19% Similarity=0.228 Sum_probs=95.6
Q ss_pred CCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEe-cCCCCccccCCCcccccccCCcceEEEcCCCcEEEEE
Q 011333 82 GIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVA-GSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD 160 (488)
Q Consensus 82 l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tva-G~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD 160 (488)
+..|+.|+.++||.+|+.+.+.+.|-++|+.+ |++.++. |+ =.+|.+|.+++||..||+|
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~t---Gev~~ypLg~----------------Ga~Phgiv~gpdg~~Witd 121 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPAT---GEVETYPLGS----------------GASPHGIVVGPDGSAWITD 121 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCC---CceEEEecCC----------------CCCCceEEECCCCCeeEec
Confidence 45799999999999999999999999999987 5555553 22 1369999999999999999
Q ss_pred CCCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEEe--
Q 011333 161 TMNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ-- 236 (488)
Q Consensus 161 ~~N~rIrkid--~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~~-- 236 (488)
+++ .|++++ ..+++++.--. ...++.|++ +++|..|+|+|+.. ++.-=++++.-.....+
T Consensus 122 ~~~-aI~R~dpkt~evt~f~lp~----------~~a~~nlet----~vfD~~G~lWFt~q-~G~yGrLdPa~~~i~vfpa 185 (353)
T COG4257 122 TGL-AIGRLDPKTLEVTRFPLPL----------EHADANLET----AVFDPWGNLWFTGQ-IGAYGRLDPARNVISVFPA 185 (353)
T ss_pred Ccc-eeEEecCcccceEEeeccc----------ccCCCcccc----eeeCCCccEEEeec-cccceecCcccCceeeecc
Confidence 988 999999 34466653211 112334544 34799999999986 33333555544433332
Q ss_pred ccCCCcceEEEEec
Q 011333 237 YGSSFPLGIAVLLA 250 (488)
Q Consensus 237 ~~~g~P~GIav~~g 250 (488)
...+.|.|||+...
T Consensus 186 PqG~gpyGi~atpd 199 (353)
T COG4257 186 PQGGGPYGICATPD 199 (353)
T ss_pred CCCCCCcceEECCC
Confidence 22346999999844
No 15
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.33 E-value=1.8e-05 Score=79.38 Aligned_cols=152 Identities=16% Similarity=0.171 Sum_probs=96.3
Q ss_pred CCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccE---------------------EEecCCCCccccCCCc-cc-
Q 011333 82 GIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPK---------------------LVAGSAEGYSGHVDGK-PR- 138 (488)
Q Consensus 82 l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~---------------------tvaG~~~G~~G~~dG~-a~- 138 (488)
+..|++|.+++||..||+|.++ .|.|+++++..+.+.. .+.|. .|+.|.-|=. ..
T Consensus 103 Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q-~G~yGrLdPa~~~i 180 (353)
T COG4257 103 GASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQ-IGAYGRLDPARNVI 180 (353)
T ss_pred CCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeec-cccceecCcccCce
Confidence 5689999999999999999988 9999999643211110 01111 1222211100 00
Q ss_pred ----ccccCCcceEEEcCCCcEEEEECCCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeE
Q 011333 139 ----EARMNHPKGLTVDDRGNIYIADTMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSL 213 (488)
Q Consensus 139 ----~a~Ln~P~GIAvD~dG~LYVAD~~N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~L 213 (488)
.-+=..|.|||+.+||.+|++....+.|-+|| ..+...+..-+.. +-+.-..|- +|+.|.+
T Consensus 181 ~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~-------------~~~gsRriw-sdpig~~ 246 (353)
T COG4257 181 SVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNA-------------LKAGSRRIW-SDPIGRA 246 (353)
T ss_pred eeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCCc-------------ccccccccc-cCccCcE
Confidence 00224688999999999999999999999999 2222222111111 011123344 8999999
Q ss_pred EEEECCCCeEEEEEcCCCceEEe---ccCCCcceEEEEe
Q 011333 214 LVIDRGNRAIREIQLHFDDCAYQ---YGSSFPLGIAVLL 249 (488)
Q Consensus 214 YVaD~gN~rIrkI~~~g~~~~~~---~~~g~P~GIav~~ 249 (488)
+++++++.++.++++........ .....|..+.||.
T Consensus 247 wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~ 285 (353)
T COG4257 247 WITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDR 285 (353)
T ss_pred EEeccCCceeeEeCcccccceeeeCCCCCCCcceeeecc
Confidence 99999999999999886544332 2223677777773
No 16
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.30 E-value=2.5e-06 Score=72.32 Aligned_cols=65 Identities=18% Similarity=0.336 Sum_probs=52.2
Q ss_pred EEEEccC-CcEEEEECC-----------------CCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceE
Q 011333 87 SVEVLPG-GELLILDSA-----------------NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGL 148 (488)
Q Consensus 87 GIaVd~d-G~LYVaD~~-----------------n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GI 148 (488)
+|+|+++ |.||++|+. ++|+.++++.+ ++..+++.+ |..|+||
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t---~~~~vl~~~----------------L~fpNGV 62 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPST---KETTVLLDG----------------LYFPNGV 62 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTT---TEEEEEEEE----------------ESSEEEE
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCC---CeEEEehhC----------------CCccCeE
Confidence 6889998 999999974 38999999997 566777764 8889999
Q ss_pred EEcCCCc-EEEEECCCCEEEEEc
Q 011333 149 TVDDRGN-IYIADTMNMAIRKIS 170 (488)
Q Consensus 149 AvD~dG~-LYVAD~~N~rIrkid 170 (488)
++++|+. |+||++..+||.|+-
T Consensus 63 als~d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 63 ALSPDESFVLVAETGRYRILRYW 85 (89)
T ss_dssp EE-TTSSEEEEEEGGGTEEEEEE
T ss_pred EEcCCCCEEEEEeccCceEEEEE
Confidence 9999997 999999999999985
No 17
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.25 E-value=2e-05 Score=82.37 Aligned_cols=128 Identities=20% Similarity=0.286 Sum_probs=82.1
Q ss_pred CceEEEEccCCcEEEEECCC-------------------CeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCC
Q 011333 84 EPYSVEVLPGGELLILDSAN-------------------SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNH 144 (488)
Q Consensus 84 ~P~GIaVd~dG~LYVaD~~n-------------------~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~ 144 (488)
.+.++++++||.|||++..+ +.|+++++++ +.+.+++.. |+.
T Consensus 125 ~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg---~~~e~~a~G----------------~rn 185 (367)
T TIGR02604 125 SLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG---GKLRVVAHG----------------FQN 185 (367)
T ss_pred cccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC---CeEEEEecC----------------cCC
Confidence 47899999999999988732 5799999987 345555432 788
Q ss_pred cceEEEcCCCcEEEEECCCCEEEEEc---CCC---cEEEeCCc-cCCCCCC---C---------CC----CcccccCCCC
Q 011333 145 PKGLTVDDRGNIYIADTMNMAIRKIS---DSG---VTTIAGGK-WGRGGGH---V---------DG----PSEDAKFSND 201 (488)
Q Consensus 145 P~GIAvD~dG~LYVAD~~N~rIrkid---~gg---VttIaGg~-~g~~~g~---~---------dG----~~~~a~f~~P 201 (488)
|.||++|++|+||++|..++...++. .++ ...+.+.. .....+. . .+ ...-..+..|
T Consensus 186 p~Gl~~d~~G~l~~tdn~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap 265 (367)
T TIGR02604 186 PYGHSVDSWGDVFFCDNDDPPLCRVTPVAEGGRNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAP 265 (367)
T ss_pred CccceECCCCCEEEEccCCCceeEEcccccccccCCCCCCCcccccccccccccccccccccccccccccccccCCCccc
Confidence 99999999999999998665444443 111 00000000 0000000 0 00 0011123578
Q ss_pred CeeEEEC-------CCCeEEEEECCCCeEEEEEcCC
Q 011333 202 FDVVYIG-------SSCSLLVIDRGNRAIREIQLHF 230 (488)
Q Consensus 202 ~gIa~vd-------~~G~LYVaD~gN~rIrkI~~~g 230 (488)
.|+++.. -+|.|+|+|...++|.++.+..
T Consensus 266 ~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~~~~l~~ 301 (367)
T TIGR02604 266 CGIAFYRGDALPEEYRGLLLVGDAHGQLIVRYSLEP 301 (367)
T ss_pred cEEEEeCCCcCCHHHCCCEEeeeccCCEEEEEEeec
Confidence 9998763 3589999999999999998864
No 18
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.22 E-value=4.6e-05 Score=78.91 Aligned_cols=145 Identities=19% Similarity=0.253 Sum_probs=92.3
Q ss_pred CCCceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEE
Q 011333 82 GIEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA 159 (488)
Q Consensus 82 l~~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVA 159 (488)
..+|+.+.++|+|. |||+|.+..+|+.++.+... +.+... ....- ..-..|+.|+++++|. +||+
T Consensus 143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~-~~l~~~-~~~~~-----------~~G~GPRh~~f~pdg~~~Yv~ 209 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT-GKLTPV-DSIKV-----------PPGSGPRHLAFSPDGKYAYVV 209 (345)
T ss_dssp STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS--TEEEE-EEEEC-----------STTSSEEEEEE-TTSSEEEEE
T ss_pred cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC-ceEEEe-ecccc-----------ccCCCCcEEEEcCCcCEEEEe
Confidence 45899999999987 99999999999999886422 122221 10000 0123599999999985 9999
Q ss_pred ECCCCEEEEEc-C--CC-cEE---EeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC-
Q 011333 160 DTMNMAIRKIS-D--SG-VTT---IAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD- 231 (488)
Q Consensus 160 D~~N~rIrkid-~--gg-Vtt---IaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~- 231 (488)
+..++.|..++ + .+ ++. +.....+. ..-+.|.+|++.++...|||++++.+.|..|+++..
T Consensus 210 ~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~-----------~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~ 278 (345)
T PF10282_consen 210 NELSNTVSVFDYDPSDGSLTEIQTISTLPEGF-----------TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT 278 (345)
T ss_dssp ETTTTEEEEEEEETTTTEEEEEEEEESCETTS-----------CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT
T ss_pred cCCCCcEEEEeecccCCceeEEEEeeeccccc-----------cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC
Confidence 99999999887 3 33 322 22221110 011478999955445579999999999999998542
Q ss_pred -ceE----EeccCCCcceEEEEec
Q 011333 232 -DCA----YQYGSSFPLGIAVLLA 250 (488)
Q Consensus 232 -~~~----~~~~~g~P~GIav~~g 250 (488)
... ...+...|.+++++..
T Consensus 279 g~l~~~~~~~~~G~~Pr~~~~s~~ 302 (345)
T PF10282_consen 279 GTLTLVQTVPTGGKFPRHFAFSPD 302 (345)
T ss_dssp TTEEEEEEEEESSSSEEEEEE-TT
T ss_pred CceEEEEEEeCCCCCccEEEEeCC
Confidence 111 1223446999999643
No 19
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.18 E-value=2.8e-06 Score=56.60 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=25.9
Q ss_pred CCCceEEEEccCCcEEEEECCCCeEEEE
Q 011333 82 GIEPYSVEVLPGGELLILDSANSNLYRI 109 (488)
Q Consensus 82 l~~P~GIaVd~dG~LYVaD~~n~rI~ki 109 (488)
|..|+||+++++|+|||+|.+||||+++
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 3589999999999999999999999986
No 20
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.07 E-value=0.00018 Score=73.21 Aligned_cols=145 Identities=14% Similarity=0.117 Sum_probs=88.2
Q ss_pred CCCceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEE
Q 011333 82 GIEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA 159 (488)
Q Consensus 82 l~~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVA 159 (488)
...|.+++++++|. |||++...+.|..++.+... +.+..+ ......+....+ -..|.+|+++++|+ ||++
T Consensus 174 g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~-~~~~~~-~~~~~~p~~~~~------~~~~~~i~~~pdg~~lyv~ 245 (330)
T PRK11028 174 GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPH-GEIECV-QTLDMMPADFSD------TRWAADIHITPDGRHLYAC 245 (330)
T ss_pred CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCC-CCEEEE-EEEecCCCcCCC------CccceeEEECCCCCEEEEe
Confidence 45789999999987 88999888899888765210 122211 110000000000 23577899999996 9999
Q ss_pred ECCCCEEEEEc---CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc--eE
Q 011333 160 DTMNMAIRKIS---DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD--CA 234 (488)
Q Consensus 160 D~~N~rIrkid---~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~--~~ 234 (488)
+...+.|..|+ +++..++.+... . -..|.++++.++...|||+..+++.|..|+.+... ..
T Consensus 246 ~~~~~~I~v~~i~~~~~~~~~~~~~~---~-----------~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~ 311 (330)
T PRK11028 246 DRTASLISVFSVSEDGSVLSFEGHQP---T-----------ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLT 311 (330)
T ss_pred cCCCCeEEEEEEeCCCCeEEEeEEEe---c-----------cccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEE
Confidence 98888888876 333333322100 0 13688898544455899999988988888765322 11
Q ss_pred E---eccCCCcceEEEE
Q 011333 235 Y---QYGSSFPLGIAVL 248 (488)
Q Consensus 235 ~---~~~~g~P~GIav~ 248 (488)
. ......|.+|+++
T Consensus 312 ~~~~~~~g~~P~~~~~~ 328 (330)
T PRK11028 312 ELGRYAVGQGPMWVSVL 328 (330)
T ss_pred EccccccCCCceEEEEE
Confidence 1 1223467777763
No 21
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.04 E-value=0.00011 Score=75.99 Aligned_cols=127 Identities=13% Similarity=0.212 Sum_probs=84.7
Q ss_pred CCCCCceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEe---cCCCCccccCCCcccccccCCcceEEEcCCCc
Q 011333 80 KLGIEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVA---GSAEGYSGHVDGKPREARMNHPKGLTVDDRGN 155 (488)
Q Consensus 80 ~~l~~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tva---G~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~ 155 (488)
..+..|..++++++|. +||++..++.|..++.+... +.+..+. -.+.+..| -+.|.+|++++||+
T Consensus 189 ~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~-g~~~~~~~~~~~~~~~~~----------~~~~~~i~ispdg~ 257 (345)
T PF10282_consen 189 PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD-GSLTEIQTISTLPEGFTG----------ENAPAEIAISPDGR 257 (345)
T ss_dssp STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT-TEEEEEEEEESCETTSCS----------SSSEEEEEE-TTSS
T ss_pred ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccC-CceeEEEEeeeccccccc----------cCCceeEEEecCCC
Confidence 3466899999999986 99999999999998876211 2222221 11111111 24799999999996
Q ss_pred -EEEEECCCCEEEEEc---C-CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333 156 -IYIADTMNMAIRKIS---D-SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF 230 (488)
Q Consensus 156 -LYVAD~~N~rIrkid---~-ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g 230 (488)
|||+.++.+.|..|+ . +.++.+.-... .-..|.++++.++...|||++...+.|..|+.+.
T Consensus 258 ~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~--------------~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 258 FLYVSNRGSNSISVFDLDPATGTLTLVQTVPT--------------GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEEEECTTTEEEEEEECTTTTTEEEEEEEEE--------------SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEEEeccCCEEEEEEEecCCCceEEEEEEeC--------------CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 999999999888777 2 34544322111 0136999995455556999999999999888764
Q ss_pred C
Q 011333 231 D 231 (488)
Q Consensus 231 ~ 231 (488)
.
T Consensus 324 ~ 324 (345)
T PF10282_consen 324 D 324 (345)
T ss_dssp T
T ss_pred C
Confidence 3
No 22
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.02 E-value=2.4e-05 Score=66.28 Aligned_cols=68 Identities=21% Similarity=0.269 Sum_probs=50.0
Q ss_pred ceEEEcCC-CcEEEEECC-----------------CCEEEEEc-CC-CcEEEeCCccCCCCCCCCCCcccccCCCCCeeE
Q 011333 146 KGLTVDDR-GNIYIADTM-----------------NMAIRKIS-DS-GVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVV 205 (488)
Q Consensus 146 ~GIAvD~d-G~LYVAD~~-----------------N~rIrkid-~g-gVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa 205 (488)
++|+|+++ |.|||+|.. ++|+.+++ .. .+++++.+ |..|+||+
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~-----------------L~fpNGVa 63 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG-----------------LYFPNGVA 63 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE-----------------ESSEEEEE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC-----------------CCccCeEE
Confidence 47999998 999999963 46899999 33 36666643 67899999
Q ss_pred EECCCCeEEEEECCCCeEEEEEcCC
Q 011333 206 YIGSSCSLLVIDRGNRAIREIQLHF 230 (488)
Q Consensus 206 ~vd~~G~LYVaD~gN~rIrkI~~~g 230 (488)
+..+...|+|+++..+||.++.+.|
T Consensus 64 ls~d~~~vlv~Et~~~Ri~rywl~G 88 (89)
T PF03088_consen 64 LSPDESFVLVAETGRYRILRYWLKG 88 (89)
T ss_dssp E-TTSSEEEEEEGGGTEEEEEESSS
T ss_pred EcCCCCEEEEEeccCceEEEEEEeC
Confidence 6555556999999999999998876
No 23
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=97.94 E-value=0.00013 Score=81.44 Aligned_cols=147 Identities=20% Similarity=0.163 Sum_probs=104.4
Q ss_pred CceeEEeecCCCCCCCceEEEEccC-CcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcce
Q 011333 69 GYTVETVFDGSKLGIEPYSVEVLPG-GELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKG 147 (488)
Q Consensus 69 G~~~~~~~~G~~~l~~P~GIaVd~d-G~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~G 147 (488)
|...++.++ .-|..|.|||||-- .++|-+|+.+.+|-+-..+|++ -..+.-. -|-.|++
T Consensus 1056 G~Ep~ti~n--~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~---rkvLf~t---------------dLVNPR~ 1115 (1289)
T KOG1214|consen 1056 GAEPETIVN--SGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSE---RKVLFYT---------------DLVNPRA 1115 (1289)
T ss_pred CCCCceeec--ccCCCccceeeeeccceeeeeccccchhheeecCCce---eeEEEee---------------cccCcce
Confidence 444455554 34679999999974 4699999999999888888743 1222211 1788999
Q ss_pred EEEcC-CCcEEEEECC--CCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeE
Q 011333 148 LTVDD-RGNIYIADTM--NMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAI 223 (488)
Q Consensus 148 IAvD~-dG~LYVAD~~--N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rI 223 (488)
|++|+ .|+||-+|+. |-.|-..+ +|.-..|.-. ..+..|+||.+.+-+..|--+|.||+|+
T Consensus 1116 iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin---------------~DigLPNGLtfdpfs~~LCWvDAGt~rl 1180 (1289)
T KOG1214|consen 1116 IVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILIN---------------TDIGLPNGLTFDPFSKLLCWVDAGTKRL 1180 (1289)
T ss_pred EEeecccCceeeccccccCCcceeeccCCccceEEee---------------cccCCCCCceeCcccceeeEEecCCcce
Confidence 99999 6799999985 55676666 5543222211 1245799999766677788889999999
Q ss_pred EEEEcCCCceE-EeccCCCcceEEEEec
Q 011333 224 REIQLHFDDCA-YQYGSSFPLGIAVLLA 250 (488)
Q Consensus 224 rkI~~~g~~~~-~~~~~g~P~GIav~~g 250 (488)
-.+.++|.... .+.++-.|.+|.-...
T Consensus 1181 eC~~p~g~gRR~i~~~LqYPF~itsy~~ 1208 (1289)
T KOG1214|consen 1181 ECTLPDGTGRRVIQNNLQYPFSITSYAD 1208 (1289)
T ss_pred eEecCCCCcchhhhhcccCceeeeeccc
Confidence 99999986443 4666677888876643
No 24
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.86 E-value=0.00027 Score=71.90 Aligned_cols=121 Identities=10% Similarity=0.072 Sum_probs=79.5
Q ss_pred CCceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCC-cEEEEE
Q 011333 83 IEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NIYIAD 160 (488)
Q Consensus 83 ~~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG-~LYVAD 160 (488)
..|.+|+++++|+ ||++....+.|..++.+.. +.+....... . ....|.+++++++| .+||++
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~--g~~~~~~~~~---~----------~~~~~~~~~~~p~g~~l~v~~ 144 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKD--GIPVAPIQII---E----------GLEGCHSANIDPDNRTLWVPC 144 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCC--CCCCCceeec---c----------CCCcccEeEeCCCCCEEEEee
Confidence 4799999999987 8888887888888876521 1111111110 0 13468999999998 488999
Q ss_pred CCCCEEEEEc-C-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333 161 TMNMAIRKIS-D-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH 229 (488)
Q Consensus 161 ~~N~rIrkid-~-gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~ 229 (488)
...+.|..++ + .+ +.......... ..=..|.++++.++...|||++...+.|..++.+
T Consensus 145 ~~~~~v~v~d~~~~g~l~~~~~~~~~~-----------~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 145 LKEDRIRLFTLSDDGHLVAQEPAEVTT-----------VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred CCCCEEEEEEECCCCcccccCCCceec-----------CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 9999999998 3 22 21100000000 0013588999655455789999989999998886
No 25
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=97.80 E-value=0.002 Score=69.59 Aligned_cols=90 Identities=18% Similarity=0.279 Sum_probs=59.4
Q ss_pred cCCceeEEeecCCCCCCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcc
Q 011333 67 ESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPK 146 (488)
Q Consensus 67 ~dG~~~~~~~~G~~~l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~ 146 (488)
..++..+....| |..|++|++.+||+|||+....++|++++..+. ....+.+.. .. ........+.
T Consensus 17 p~~f~~~~va~G---L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~---~~~~~~~l~-~v-------~~~~ge~GLl 82 (454)
T TIGR03606 17 SENFDKKVLLSG---LNKPWALLWGPDNQLWVTERATGKILRVNPETG---EVKVVFTLP-EI-------VNDAQHNGLL 82 (454)
T ss_pred CCCcEEEEEECC---CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC---ceeeeecCC-ce-------eccCCCCcee
Confidence 345666665553 679999999999999999987789999987642 223333321 00 0001245688
Q ss_pred eEEEcCCC-------cEEEEEC---------CCCEEEEEc
Q 011333 147 GLTVDDRG-------NIYIADT---------MNMAIRKIS 170 (488)
Q Consensus 147 GIAvD~dG-------~LYVAD~---------~N~rIrkid 170 (488)
|||++++- .|||+=+ ...+|.++.
T Consensus 83 glal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~ 122 (454)
T TIGR03606 83 GLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYT 122 (454)
T ss_pred eEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEE
Confidence 99998763 6999832 146787776
No 26
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=97.79 E-value=0.00097 Score=69.78 Aligned_cols=104 Identities=20% Similarity=0.314 Sum_probs=74.9
Q ss_pred CCcceEEEcCCC-cEEEEECCCCEEEEEc-CCCcE-EEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC
Q 011333 143 NHPKGLTVDDRG-NIYIADTMNMAIRKIS-DSGVT-TIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG 219 (488)
Q Consensus 143 n~P~GIAvD~dG-~LYVAD~~N~rIrkid-~ggVt-tIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~g 219 (488)
.+|.||+++..| +|||||.+ --+.+++ .++.. .++....+ ..+...+++. ++++|.||++|+.
T Consensus 115 GRPLGl~f~~~ggdL~VaDAY-lGL~~V~p~g~~a~~l~~~~~G------------~~~kf~N~ld-I~~~g~vyFTDSS 180 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAY-LGLLKVGPEGGLAELLADEAEG------------KPFKFLNDLD-IDPEGVVYFTDSS 180 (376)
T ss_pred CCcceEEeccCCCeEEEEecc-eeeEEECCCCCcceeccccccC------------eeeeecCcee-EcCCCeEEEeccc
Confidence 479999999988 99999974 4578888 56653 33332221 2455677888 6779999999974
Q ss_pred -----------------CCeEEEEEcCCCce-EEeccCCCcceEEEEecCCceEEEEEE
Q 011333 220 -----------------NRAIREIQLHFDDC-AYQYGSSFPLGIAVLLAAGFFGYMLAL 260 (488)
Q Consensus 220 -----------------N~rIrkI~~~g~~~-~~~~~~g~P~GIav~~g~g~~Gy~~a~ 260 (488)
++|+.++|+..... ....+..+|.|+++.....++.+.=+.
T Consensus 181 sk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~ 239 (376)
T KOG1520|consen 181 SKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETT 239 (376)
T ss_pred cccchhheEEeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeec
Confidence 36777777766544 446788899999999887776665433
No 27
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=97.78 E-value=0.00022 Score=79.84 Aligned_cols=134 Identities=17% Similarity=0.143 Sum_probs=102.5
Q ss_pred CceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCC-cEEEEEC
Q 011333 84 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NIYIADT 161 (488)
Q Consensus 84 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG-~LYVAD~ 161 (488)
-|-||.+|- +-.+|-+|...+.|.+-+.+| ++..+++.+. |..|.|||||--+ |+|-+|+
T Consensus 1026 IiVGidfDC~e~mvyWtDv~g~SI~rasL~G---~Ep~ti~n~~---------------L~SPEGiAVDh~~Rn~ywtDS 1087 (1289)
T KOG1214|consen 1026 IIVGIDFDCRERMVYWTDVAGRSISRASLEG---AEPETIVNSG---------------LISPEGIAVDHIRRNMYWTDS 1087 (1289)
T ss_pred eeeeeecccccceEEEeecCCCccccccccC---CCCceeeccc---------------CCCccceeeeeccceeeeecc
Confidence 356777775 566999999999999999987 5677776642 8899999999755 7999999
Q ss_pred CCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC--CCCeEEEEEcCCCceEE--e
Q 011333 162 MNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR--GNRAIREIQLHFDDCAY--Q 236 (488)
Q Consensus 162 ~N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~--gN~rIrkI~~~g~~~~~--~ 236 (488)
.+.+|-+-. +|....+.-. ..|.+|.+|++..-.|+||-+|+ .|-.|-..+++|+.-.. +
T Consensus 1088 ~lD~IevA~LdG~~rkvLf~---------------tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin 1152 (1289)
T KOG1214|consen 1088 VLDKIEVALLDGSERKVLFY---------------TDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILIN 1152 (1289)
T ss_pred ccchhheeecCCceeeEEEe---------------ecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEee
Confidence 999988776 5553222211 12678999996555899999997 57789999999865543 5
Q ss_pred ccCCCcceEEEEec
Q 011333 237 YGSSFPLGIAVLLA 250 (488)
Q Consensus 237 ~~~g~P~GIav~~g 250 (488)
...+.|.|+.++.-
T Consensus 1153 ~DigLPNGLtfdpf 1166 (1289)
T KOG1214|consen 1153 TDIGLPNGLTFDPF 1166 (1289)
T ss_pred cccCCCCCceeCcc
Confidence 66789999988854
No 28
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.65 E-value=0.00098 Score=69.02 Aligned_cols=126 Identities=19% Similarity=0.219 Sum_probs=76.1
Q ss_pred CCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCC----CcEE
Q 011333 82 GIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR----GNIY 157 (488)
Q Consensus 82 l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~d----G~LY 157 (488)
|.+|++|++.|||+|||++. .++|++++.++.. ...+.....-. ........|||++++ +.||
T Consensus 1 L~~P~~~a~~pdG~l~v~e~-~G~i~~~~~~g~~---~~~v~~~~~v~---------~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 1 LNNPRSMAFLPDGRLLVAER-SGRIWVVDKDGSL---KTPVADLPEVF---------ADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp ESSEEEEEEETTSCEEEEET-TTEEEEEETTTEE---CEEEEE-TTTB---------TSTTBSEEEEEE-TTCCCC-EEE
T ss_pred CCCceEEEEeCCCcEEEEeC-CceEEEEeCCCcC---cceeccccccc---------ccccCCcccceeccccCCCCEEE
Confidence 35899999999999999999 8999999966421 12333221000 011345789999994 8899
Q ss_pred EEECCC--------CEEEEEc--CC--C---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC---
Q 011333 158 IADTMN--------MAIRKIS--DS--G---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG--- 219 (488)
Q Consensus 158 VAD~~N--------~rIrkid--~g--g---VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~g--- 219 (488)
|+-+.. .+|.++. .+ . ..++..+... .......-..|+ ++++|.|||+=-.
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~----------~~~~~H~g~~l~-fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPD----------TSSGNHNGGGLA-FGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-----------CSSSS-EEEEE-E-TTSEEEEEEB-TTT
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCC----------CCCCCCCCcccc-CCCCCcEEEEeCCCCC
Confidence 987632 4677666 33 1 2223221111 001223445677 7899999998532
Q ss_pred ----------CCeEEEEEcCCC
Q 011333 220 ----------NRAIREIQLHFD 231 (488)
Q Consensus 220 ----------N~rIrkI~~~g~ 231 (488)
.+.|.+|+++|.
T Consensus 137 ~~~~~~~~~~~G~ilri~~dG~ 158 (331)
T PF07995_consen 137 DDNAQDPNSLRGKILRIDPDGS 158 (331)
T ss_dssp GGGGCSTTSSTTEEEEEETTSS
T ss_pred cccccccccccceEEEecccCc
Confidence 367999998874
No 29
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.39 E-value=0.012 Score=57.16 Aligned_cols=136 Identities=13% Similarity=0.131 Sum_probs=83.8
Q ss_pred CceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEEC
Q 011333 84 EPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT 161 (488)
Q Consensus 84 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~ 161 (488)
.|..++++++|. ||++....+.|+.++..+.. .+..+-... .+. ...-..|.+++++++|+ +|++..
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~--~~~~~~~~~---~~~------~~~~~~~~~i~~s~dg~~~~~~~~ 226 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRK--VIKKITFEI---PGV------HPEAVQPVGIKLTKDGKTAFVALG 226 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCEEEEEEcCcce--eeeeeeecc---ccc------ccccCCccceEECCCCCEEEEEcC
Confidence 577888999987 55665556789999987532 112221110 000 00012588999999997 588877
Q ss_pred CCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEE-ecc
Q 011333 162 MNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY-QYG 238 (488)
Q Consensus 162 ~N~rIrkid--~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~-~~~ 238 (488)
.+++|..++ .+.+...... -..+.++++.+....||++....+.|..++.....+.. ...
T Consensus 227 ~~~~i~v~d~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 227 PANRVAVVDAKTYEVLDYLLV-----------------GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred CCCeEEEEECCCCcEEEEEEe-----------------CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence 788899998 3344322211 01367888544444677777777899999998765532 223
Q ss_pred CCCcceEEE
Q 011333 239 SSFPLGIAV 247 (488)
Q Consensus 239 ~g~P~GIav 247 (488)
...|.+|++
T Consensus 290 ~~~~~~~~~ 298 (300)
T TIGR03866 290 GRLPWGVVV 298 (300)
T ss_pred ccccceeEe
Confidence 356777775
No 30
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.25 E-value=0.029 Score=58.19 Aligned_cols=145 Identities=15% Similarity=0.190 Sum_probs=90.4
Q ss_pred CCCCCceEEEEccCCc-EEEEECCCCeEEEEeCCC--CcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-
Q 011333 80 KLGIEPYSVEVLPGGE-LLILDSANSNLYRISSSL--SLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN- 155 (488)
Q Consensus 80 ~~l~~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g--~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~- 155 (488)
+.+..|.-|++.|+|. .|+..--|+.|-.+.-+. +.+.++.++.--+..+.| -+.-..|.++++|+
T Consensus 188 ~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g----------~~~~aaIhis~dGrF 257 (346)
T COG2706 188 KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTG----------TNWAAAIHISPDGRF 257 (346)
T ss_pred CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCC----------CCceeEEEECCCCCE
Confidence 4466899999999998 888888888887776553 333334444333344444 24455799999997
Q ss_pred EEEEECCCCEEEEEc---CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 011333 156 IYIADTMNMAIRKIS---DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD 231 (488)
Q Consensus 156 LYVAD~~N~rIrkid---~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~ 231 (488)
||++|++-+.|..+. +++ +.++.-... .-..|.+..+.+....|+++....+.|.++..+..
T Consensus 258 LYasNRg~dsI~~f~V~~~~g~L~~~~~~~t--------------eg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 258 LYASNRGHDSIAVFSVDPDGGKLELVGITPT--------------EGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred EEEecCCCCeEEEEEEcCCCCEEEEEEEecc--------------CCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 999999988777655 445 443332111 12357777744445567777776677777776654
Q ss_pred ceEE---eccCCCcceEEEE
Q 011333 232 DCAY---QYGSSFPLGIAVL 248 (488)
Q Consensus 232 ~~~~---~~~~g~P~GIav~ 248 (488)
.+.. ..-...|..+|+.
T Consensus 324 TG~L~~~~~~~~~p~Pvcv~ 343 (346)
T COG2706 324 TGRLTLLGRYAVVPEPVCVK 343 (346)
T ss_pred CceEEecccccCCCCcEEEE
Confidence 3332 1222345556654
No 31
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.10 E-value=0.0017 Score=64.94 Aligned_cols=77 Identities=25% Similarity=0.399 Sum_probs=45.7
Q ss_pred CCCceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEE
Q 011333 82 GIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD 160 (488)
Q Consensus 82 l~~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD 160 (488)
...|.++++++ .|+|||....+++|..++.+|...+...+.. |..| ....+.+|.|||+|++|+|||+.
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~----g~~g------l~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDR----GFHG------LSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-ST----TGGG-------SS---SEEEEEE-TT--EEEEE
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCC----cccC------cccccCCccEEEECCCCCEEEEc
Confidence 45799999998 6889999999999999998863322222221 2222 22458899999999999999998
Q ss_pred CCCCEEEEE
Q 011333 161 TMNMAIRKI 169 (488)
Q Consensus 161 ~~N~rIrki 169 (488)
--| ...+|
T Consensus 240 EpN-lfy~f 247 (248)
T PF06977_consen 240 EPN-LFYRF 247 (248)
T ss_dssp TTT-EEEEE
T ss_pred CCc-eEEEe
Confidence 644 55554
No 32
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=96.97 E-value=0.037 Score=56.39 Aligned_cols=152 Identities=18% Similarity=0.132 Sum_probs=86.2
Q ss_pred CceEEEEccCCcEEEEECCC------------CeEEEEeCCCCcccccEEEe-cCCCCccccCCCcccccccCCcceEEE
Q 011333 84 EPYSVEVLPGGELLILDSAN------------SNLYRISSSLSLYSRPKLVA-GSAEGYSGHVDGKPREARMNHPKGLTV 150 (488)
Q Consensus 84 ~P~GIaVd~dG~LYVaD~~n------------~rI~kid~~g~~~g~i~tva-G~~~G~~G~~dG~a~~a~Ln~P~GIAv 150 (488)
+..++.+|..|.|||.|.+. -+|+.||..+.. .+.++. ... -. ..-..-+.|+|
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~--li~~~~~p~~-~~----------~~~s~lndl~V 68 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQ--LIRRYPFPPD-IA----------PPDSFLNDLVV 68 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTC--EEEEEE--CC-CS-----------TCGGEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCc--EEEEEECChH-Hc----------ccccccceEEE
Confidence 45789999999999999874 489999998643 222221 110 00 01123567888
Q ss_pred cCC------CcEEEEECCCCEEEEEc--CCCcEEEe---------------CCcc-----C----------CC-------
Q 011333 151 DDR------GNIYIADTMNMAIRKIS--DSGVTTIA---------------GGKW-----G----------RG------- 185 (488)
Q Consensus 151 D~d------G~LYVAD~~N~rIrkid--~ggVttIa---------------Gg~~-----g----------~~------- 185 (488)
|.. +-+||+|.....|.++| ++...-+. ++.. + ..
T Consensus 69 D~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~ 148 (287)
T PF03022_consen 69 DVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFH 148 (287)
T ss_dssp ECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEE
T ss_pred EccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEE
Confidence 862 46999999888887777 32221111 1100 0 00
Q ss_pred --CCC----------CCCCc-ccc----cC-------CCCCeeEEECCCCeEEEEECCCCeEEEEEcCC-----CceE--
Q 011333 186 --GGH----------VDGPS-EDA----KF-------SNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF-----DDCA-- 234 (488)
Q Consensus 186 --~g~----------~dG~~-~~a----~f-------~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g-----~~~~-- 234 (488)
++. .+... .+. .+ ..-.+++ .|++|+||+++..++.|.+++.++ +...
T Consensus 149 ~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~-~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~ 227 (287)
T PF03022_consen 149 PLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMA-IDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILA 227 (287)
T ss_dssp ETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEE-EETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEE
T ss_pred eCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEE-ECCCCcEEEecCCCCeEEEEeCCCCcCccchheeE
Confidence 000 01100 011 11 1335666 789999999999999999999998 2222
Q ss_pred Eecc-CCCcceEEEEe
Q 011333 235 YQYG-SSFPLGIAVLL 249 (488)
Q Consensus 235 ~~~~-~g~P~GIav~~ 249 (488)
.... .-+|.+++++.
T Consensus 228 ~d~~~l~~pd~~~i~~ 243 (287)
T PF03022_consen 228 QDPRTLQWPDGLKIDP 243 (287)
T ss_dssp E-CC-GSSEEEEEE-T
T ss_pred EcCceeeccceeeecc
Confidence 2223 56899999985
No 33
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.93 E-value=0.071 Score=51.66 Aligned_cols=118 Identities=14% Similarity=0.229 Sum_probs=73.6
Q ss_pred CcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEECCCCEEEEEc-C
Q 011333 94 GELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTMNMAIRKIS-D 171 (488)
Q Consensus 94 G~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~~N~rIrkid-~ 171 (488)
+++|++...++.|.+++..++. .+.++.+ -..|.+++++++|. +|++....+.|+.++ .
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~--~~~~~~~-----------------~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~ 61 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLE--VTRTFPV-----------------GQRPRGITLSKDGKLLYVCASDSDTIQVIDLA 61 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCc--eEEEEEC-----------------CCCCCceEECCCCCEEEEEECCCCeEEEEECC
Confidence 4688888888899999876421 2222221 12367899999986 788888888999999 3
Q ss_pred -CCcE-EEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCCCceEEecc-CCCcceEEE
Q 011333 172 -SGVT-TIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHFDDCAYQYG-SSFPLGIAV 247 (488)
Q Consensus 172 -ggVt-tIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gN~rIrkI~~~g~~~~~~~~-~g~P~GIav 247 (488)
+.+. ++..+ ..|..+++ ++++ .||++....+.|+.+++....+..... ...|.++++
T Consensus 62 ~~~~~~~~~~~------------------~~~~~~~~-~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 122 (300)
T TIGR03866 62 TGEVIGTLPSG------------------PDPELFAL-HPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAV 122 (300)
T ss_pred CCcEEEeccCC------------------CCccEEEE-CCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEE
Confidence 3332 22111 12456674 4444 578887777899999987644332221 234666666
Q ss_pred Ee
Q 011333 248 LL 249 (488)
Q Consensus 248 ~~ 249 (488)
..
T Consensus 123 ~~ 124 (300)
T TIGR03866 123 SP 124 (300)
T ss_pred CC
Confidence 53
No 34
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.87 E-value=0.013 Score=58.61 Aligned_cols=124 Identities=10% Similarity=0.118 Sum_probs=64.1
Q ss_pred ceEEEEccC-CcEEEEE-CCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEEEEEC
Q 011333 85 PYSVEVLPG-GELLILD-SANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIADT 161 (488)
Q Consensus 85 P~GIaVd~d-G~LYVaD-~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LYVAD~ 161 (488)
-.||+.|+. +.||++- ..-.+|+.++..... ..+...... ... .....+..|.+|++|+ .|+|||-..
T Consensus 120 ~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~-~~~~~~~~~--~~~------~~~~~~~d~S~l~~~p~t~~lliLS~ 190 (248)
T PF06977_consen 120 FEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGG-FDLFVSDDQ--DLD------DDKLFVRDLSGLSYDPRTGHLLILSD 190 (248)
T ss_dssp -EEEEEETTTTEEEEEEESSSEEEEEEESTT-S-S--EEEE-H--HHH-------HT--SS---EEEEETTTTEEEEEET
T ss_pred eEEEEEcCCCCEEEEEeCCCChhhEEEccccCc-cceeecccc--ccc------cccceeccccceEEcCCCCeEEEEEC
Confidence 579999985 5677774 322457777651100 111111110 000 1223467899999998 578999999
Q ss_pred CCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEE
Q 011333 162 MNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREI 226 (488)
Q Consensus 162 ~N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI 226 (488)
.+++|..+| +|.+........+. ......+..|-||| +|++|+|||+.--| +..+|
T Consensus 191 es~~l~~~d~~G~~~~~~~L~~g~-------~gl~~~~~QpEGIa-~d~~G~LYIvsEpN-lfy~f 247 (248)
T PF06977_consen 191 ESRLLLELDRQGRVVSSLSLDRGF-------HGLSKDIPQPEGIA-FDPDGNLYIVSEPN-LFYRF 247 (248)
T ss_dssp TTTEEEEE-TT--EEEEEE-STTG-------GG-SS---SEEEEE-E-TT--EEEEETTT-EEEEE
T ss_pred CCCeEEEECCCCCEEEEEEeCCcc-------cCcccccCCccEEE-ECCCCCEEEEcCCc-eEEEe
Confidence 999999999 66643222211111 01223578899999 78999999998744 66665
No 35
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=96.82 E-value=0.014 Score=64.37 Aligned_cols=83 Identities=25% Similarity=0.328 Sum_probs=54.2
Q ss_pred CCCCCceEEEEcc-CCcEEEEECCCC-------------------eEEEEeCCCCc----ccccE--EEecCCCCccccC
Q 011333 80 KLGIEPYSVEVLP-GGELLILDSANS-------------------NLYRISSSLSL----YSRPK--LVAGSAEGYSGHV 133 (488)
Q Consensus 80 ~~l~~P~GIaVd~-dG~LYVaD~~n~-------------------rI~kid~~g~~----~g~i~--tvaG~~~G~~G~~ 133 (488)
..+..|.+|++++ +|.|||+-+.++ +|+++++.+.. ..++. .++|.........
T Consensus 347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~ 426 (524)
T PF05787_consen 347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG 426 (524)
T ss_pred ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence 3467999999998 689999976655 89999987530 01222 3333211111111
Q ss_pred CCcccccccCCcceEEEcCCCcEEEEECC
Q 011333 134 DGKPREARMNHPKGLTVDDRGNIYIADTM 162 (488)
Q Consensus 134 dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~ 162 (488)
.+......|..|-+|++|++|+|||+.-.
T Consensus 427 ~~~~~~~~f~sPDNL~~d~~G~LwI~eD~ 455 (524)
T PF05787_consen 427 SNKCDDNGFASPDNLAFDPDGNLWIQEDG 455 (524)
T ss_pred cCcccCCCcCCCCceEECCCCCEEEEeCC
Confidence 22234556999999999999999997544
No 36
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.66 E-value=0.041 Score=56.51 Aligned_cols=116 Identities=18% Similarity=0.223 Sum_probs=76.0
Q ss_pred eEEEEcc---CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEE--
Q 011333 86 YSVEVLP---GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD-- 160 (488)
Q Consensus 86 ~GIaVd~---dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD-- 160 (488)
.|+|+.. ...||.+|..+++|-++|.+- ....+.|.+. | +...+ =-.|.+|..- .|+|||+=
T Consensus 141 kGLAi~~~~~~~~LYaadF~~g~IDVFd~~f----~~~~~~g~F~------D-P~iPa-gyAPFnIqni-g~~lyVtYA~ 207 (336)
T TIGR03118 141 KGLAVGPTGGGDYLYAANFRQGRIDVFKGSF----RPPPLPGSFI------D-PALPA-GYAPFNVQNL-GGTLYVTYAQ 207 (336)
T ss_pred eeeEEeecCCCceEEEeccCCCceEEecCcc----ccccCCCCcc------C-CCCCC-CCCCcceEEE-CCeEEEEEEe
Confidence 5777764 345999999999999998763 2223334321 1 00001 1246677654 57899862
Q ss_pred -----------CCCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECC-----CCeEEEEECCCCe
Q 011333 161 -----------TMNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGS-----SCSLLVIDRGNRA 222 (488)
Q Consensus 161 -----------~~N~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~-----~G~LYVaD~gN~r 222 (488)
.+...|-+|+ +|. +..++.+ ..|+.||+||..+. +|.|+|.+.+.++
T Consensus 208 qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~---------------g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~ 272 (336)
T TIGR03118 208 QDADRNDEVAGAGLGYVNVFTLNGQLLRRVASS---------------GRLNAPWGLAIAPESFGSLSGALLVGNFGDGT 272 (336)
T ss_pred cCCcccccccCCCcceEEEEcCCCcEEEEeccC---------------CcccCCceeeeChhhhCCCCCCeEEeecCCce
Confidence 2345677777 444 4445432 35999999994332 6799999999999
Q ss_pred EEEEEcC
Q 011333 223 IREIQLH 229 (488)
Q Consensus 223 IrkI~~~ 229 (488)
|..+|+.
T Consensus 273 InaFD~~ 279 (336)
T TIGR03118 273 INAYDPQ 279 (336)
T ss_pred eEEecCC
Confidence 9999986
No 37
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.40 E-value=0.13 Score=54.09 Aligned_cols=113 Identities=15% Similarity=0.095 Sum_probs=72.3
Q ss_pred CcEEEEECC----CCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCC-cEEEEEC-------
Q 011333 94 GELLILDSA----NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NIYIADT------- 161 (488)
Q Consensus 94 G~LYVaD~~----n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG-~LYVAD~------- 161 (488)
.++||.|.. .++|.+||.+... .+.++.. =..|+++ +.+|| .||||.+
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~~~--v~g~i~~-----------------G~~P~~~-~spDg~~lyva~~~~~R~~~ 72 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEAGR--VLGMTDG-----------------GFLPNPV-VASDGSFFAHASTVYSRIAR 72 (352)
T ss_pred CEEEEECCcccccCceEEEEECCCCE--EEEEEEc-----------------cCCCcee-ECCCCCEEEEEecccccccc
Confidence 459999986 3899999987521 1222211 1258897 89988 5999999
Q ss_pred --CCCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC-CCeEEEEEcCCCce
Q 011333 162 --MNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG-NRAIREIQLHFDDC 233 (488)
Q Consensus 162 --~N~rIrkid~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~g-N~rIrkI~~~g~~~ 233 (488)
..+.|..||......+.....+. .+.......|..+++.++...|||++.. .+.|-+||+.....
T Consensus 73 G~~~d~V~v~D~~t~~~~~~i~~p~-------~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv 140 (352)
T TIGR02658 73 GKRTDYVEVIDPQTHLPIADIELPE-------GPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF 140 (352)
T ss_pred CCCCCEEEEEECccCcEEeEEccCC-------CchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE
Confidence 78899999943322222111000 0011124567888854444479999966 89999999886444
No 38
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.35 E-value=0.024 Score=56.30 Aligned_cols=82 Identities=20% Similarity=0.289 Sum_probs=56.8
Q ss_pred CceEEEEccCC-cEEEEECCCCeEEEEe--CCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEE
Q 011333 84 EPYSVEVLPGG-ELLILDSANSNLYRIS--SSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD 160 (488)
Q Consensus 84 ~P~GIaVd~dG-~LYVaD~~n~rI~kid--~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD 160 (488)
-|.||+.|.+- .+|+.|+.|..|-.++ ..++.+.....+..-.... ..+ =-.|.|+++|.+|+||||-
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~-------~~e--~~~PDGm~ID~eG~L~Va~ 229 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQ-------PFE--SLEPDGMTIDTEGNLYVAT 229 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCC-------CcC--CCCCCcceEccCCcEEEEE
Confidence 57899988654 4999999999995444 5565444444444321100 001 1248899999999999999
Q ss_pred CCCCEEEEEc--CCCc
Q 011333 161 TMNMAIRKIS--DSGV 174 (488)
Q Consensus 161 ~~N~rIrkid--~ggV 174 (488)
....+|.+++ +|.+
T Consensus 230 ~ng~~V~~~dp~tGK~ 245 (310)
T KOG4499|consen 230 FNGGTVQKVDPTTGKI 245 (310)
T ss_pred ecCcEEEEECCCCCcE
Confidence 9999999999 4443
No 39
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.28 E-value=0.16 Score=50.62 Aligned_cols=79 Identities=14% Similarity=0.233 Sum_probs=56.6
Q ss_pred cCCcceEEEcCCC-cEEEEECCCCEEEEE--c-CCC-c---EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeE
Q 011333 142 MNHPKGLTVDDRG-NIYIADTMNMAIRKI--S-DSG-V---TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSL 213 (488)
Q Consensus 142 Ln~P~GIAvD~dG-~LYVAD~~N~rIrki--d-~gg-V---ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~L 213 (488)
+.-|+||+.|.+- .+|+.|+.|..|..+ + .++ + ..|....... +.+. ..|-|++ +|.+|+|
T Consensus 157 v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~--------~~e~--~~PDGm~-ID~eG~L 225 (310)
T KOG4499|consen 157 VGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQ--------PFES--LEPDGMT-IDTEGNL 225 (310)
T ss_pred ccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCC--------CcCC--CCCCcce-EccCCcE
Confidence 5679999999876 599999999999544 4 333 2 2232221111 1111 2588999 7999999
Q ss_pred EEEECCCCeEEEEEcCCC
Q 011333 214 LVIDRGNRAIREIQLHFD 231 (488)
Q Consensus 214 YVaD~gN~rIrkI~~~g~ 231 (488)
|||-.+.++|+++++...
T Consensus 226 ~Va~~ng~~V~~~dp~tG 243 (310)
T KOG4499|consen 226 YVATFNGGTVQKVDPTTG 243 (310)
T ss_pred EEEEecCcEEEEECCCCC
Confidence 999999999999998754
No 40
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=96.23 E-value=0.12 Score=56.03 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=22.9
Q ss_pred cCCCCCeeEEECCCCeEEEEECCC---CeEEEEE
Q 011333 197 KFSNDFDVVYIGSSCSLLVIDRGN---RAIREIQ 227 (488)
Q Consensus 197 ~f~~P~gIa~vd~~G~LYVaD~gN---~rIrkI~ 227 (488)
-+.+|.+++ ++++|.||++|-+- ..|.+|.
T Consensus 228 G~RNp~Gla-~dp~G~Lw~~e~Gp~~~DEiN~I~ 260 (454)
T TIGR03606 228 GHRNPQGLA-FTPDGTLYASEQGPNSDDELNIIV 260 (454)
T ss_pred eccccceeE-ECCCCCEEEEecCCCCCcEEEEec
Confidence 478999999 67799999999765 3455544
No 41
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=96.13 E-value=0.4 Score=49.96 Aligned_cols=163 Identities=14% Similarity=0.172 Sum_probs=101.7
Q ss_pred CceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEEC
Q 011333 84 EPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT 161 (488)
Q Consensus 84 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~ 161 (488)
+++..-++|+|+ |+++|-+..||..++.+- |.+. .+....-.. =..|+-|++.++|. .|+.--
T Consensus 146 h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~d---g~L~-~~~~~~v~~-----------G~GPRHi~FHpn~k~aY~v~E 210 (346)
T COG2706 146 HVHSANFTPDGRYLVVPDLGTDRIFLYDLDD---GKLT-PADPAEVKP-----------GAGPRHIVFHPNGKYAYLVNE 210 (346)
T ss_pred ccceeeeCCCCCEEEEeecCCceEEEEEccc---Cccc-cccccccCC-----------CCCcceEEEcCCCcEEEEEec
Confidence 367777899995 888999999999999873 2221 111110111 13589999999996 888888
Q ss_pred CCCEEEEEc--C--CCcEE---EeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce-
Q 011333 162 MNMAIRKIS--D--SGVTT---IAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC- 233 (488)
Q Consensus 162 ~N~rIrkid--~--ggVtt---IaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~- 233 (488)
-|+.|-.+. + +.+.. +...+..+ ..-++-..|.+..+..-||++|++.+.|..+..+....
T Consensus 211 L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF-----------~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~ 279 (346)
T COG2706 211 LNSTVDVLEYNPAVGKFEELQTIDTLPEDF-----------TGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGK 279 (346)
T ss_pred cCCEEEEEEEcCCCceEEEeeeeccCcccc-----------CCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCE
Confidence 899888776 3 33433 33222221 01233456774444446999999999998887765432
Q ss_pred -EE---e-ccCCCcceEEEEecCCceEEEEEEEEeccceEEeccCCC
Q 011333 234 -AY---Q-YGSSFPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQNDH 275 (488)
Q Consensus 234 -~~---~-~~~g~P~GIav~~g~g~~Gy~~a~l~~~~g~~~~s~~~~ 275 (488)
.. . ...-+|.++.+..++ .++.|.-|.-....+...+.+
T Consensus 280 L~~~~~~~teg~~PR~F~i~~~g---~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 280 LELVGITPTEGQFPRDFNINPSG---RFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred EEEEEEeccCCcCCccceeCCCC---CEEEEEccCCCcEEEEEEcCC
Confidence 11 2 222358888887542 345666666666666665554
No 42
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.82 E-value=0.049 Score=56.47 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=53.3
Q ss_pred cCCcceEEEcCCCcEEEEECCCCEEEEEc-CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECC----CCeEEE
Q 011333 142 MNHPKGLTVDDRGNIYIADTMNMAIRKIS-DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGS----SCSLLV 215 (488)
Q Consensus 142 Ln~P~GIAvD~dG~LYVAD~~N~rIrkid-~ggV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~----~G~LYV 215 (488)
|+.|++|++.++|.|||++. ..+|+.++ ++.. ..+....... ........+|| +++ ++.|||
T Consensus 1 L~~P~~~a~~pdG~l~v~e~-~G~i~~~~~~g~~~~~v~~~~~v~----------~~~~~gllgia-~~p~f~~n~~lYv 68 (331)
T PF07995_consen 1 LNNPRSMAFLPDGRLLVAER-SGRIWVVDKDGSLKTPVADLPEVF----------ADGERGLLGIA-FHPDFASNGYLYV 68 (331)
T ss_dssp ESSEEEEEEETTSCEEEEET-TTEEEEEETTTEECEEEEE-TTTB----------TSTTBSEEEEE-E-TTCCCC-EEEE
T ss_pred CCCceEEEEeCCCcEEEEeC-CceEEEEeCCCcCcceeccccccc----------ccccCCcccce-eccccCCCCEEEE
Confidence 57899999999999999998 99999999 5554 4444322111 11123568899 555 589999
Q ss_pred EECCC--------CeEEEEEcCCC
Q 011333 216 IDRGN--------RAIREIQLHFD 231 (488)
Q Consensus 216 aD~gN--------~rIrkI~~~g~ 231 (488)
+-+.. .+|.++.....
T Consensus 69 ~~t~~~~~~~~~~~~v~r~~~~~~ 92 (331)
T PF07995_consen 69 YYTNADEDGGDNDNRVVRFTLSDG 92 (331)
T ss_dssp EEEEE-TSSSSEEEEEEEEEEETT
T ss_pred EEEcccCCCCCcceeeEEEeccCC
Confidence 98732 57777777654
No 43
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=95.69 E-value=0.59 Score=49.35 Aligned_cols=135 Identities=17% Similarity=0.168 Sum_probs=74.8
Q ss_pred ceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEECC
Q 011333 85 PYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTM 162 (488)
Q Consensus 85 P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~~ 162 (488)
+.++++.+||. +||++. .+.|.+||....+ .+..+.- =..|.||++++||+ +|++...
T Consensus 39 h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~--~v~~i~~-----------------G~~~~~i~~s~DG~~~~v~n~~ 98 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANR-DGTVSVIDLATGK--VVATIKV-----------------GGNPRGIAVSPDGKYVYVANYE 98 (369)
T ss_dssp EEEEE-TT-SSEEEEEET-TSEEEEEETTSSS--EEEEEE------------------SSEEEEEEE--TTTEEEEEEEE
T ss_pred eeEEEecCCCCEEEEEcC-CCeEEEEECCccc--EEEEEec-----------------CCCcceEEEcCCCCEEEEEecC
Confidence 34567788887 999986 5799999998532 2223311 12489999999996 8999999
Q ss_pred CCEEEEEcCCC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc-e--EEe
Q 011333 163 NMAIRKISDSG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD-C--AYQ 236 (488)
Q Consensus 163 N~rIrkid~gg---VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~-~--~~~ 236 (488)
.+.+..+|... +.+|..+.... ++ .=..+.+|...+.....+|+-...+.|+.++..... . ...
T Consensus 99 ~~~v~v~D~~tle~v~~I~~~~~~~-----~~-----~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i 168 (369)
T PF02239_consen 99 PGTVSVIDAETLEPVKTIPTGGMPV-----DG-----PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTI 168 (369)
T ss_dssp TTEEEEEETTT--EEEEEE--EE-T-----TT-----S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEE
T ss_pred CCceeEeccccccceeecccccccc-----cc-----cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeee
Confidence 99999999433 45554322110 00 111234554334444455566677888888755421 1 112
Q ss_pred ccCCCcceEEEEe
Q 011333 237 YGSSFPLGIAVLL 249 (488)
Q Consensus 237 ~~~g~P~GIav~~ 249 (488)
....+|.+..++.
T Consensus 169 ~~g~~~~D~~~dp 181 (369)
T PF02239_consen 169 KVGRFPHDGGFDP 181 (369)
T ss_dssp E--TTEEEEEE-T
T ss_pred cccccccccccCc
Confidence 2233566666664
No 44
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=95.23 E-value=0.46 Score=49.10 Aligned_cols=134 Identities=19% Similarity=0.259 Sum_probs=75.3
Q ss_pred CceEEEEccCCcEEEEECCC------CeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-E
Q 011333 84 EPYSVEVLPGGELLILDSAN------SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-I 156 (488)
Q Consensus 84 ~P~GIaVd~dG~LYVaD~~n------~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-L 156 (488)
.+.||++.++|.+||++-+. ++|++++.+|.. +..+ --+....-...+......=....|||+.++|. |
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~---~~~~-~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l 161 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRV---IRRF-PVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTL 161 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcc---cceE-ccccccccccCccccccCCCCeEEEEECCCCCEE
Confidence 78899998899999999999 999999998532 1222 10111100000000001113467999999998 8
Q ss_pred EEEECC---------------CCEEEEEcCC--C--cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEE
Q 011333 157 YIADTM---------------NMAIRKISDS--G--VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVID 217 (488)
Q Consensus 157 YVAD~~---------------N~rIrkid~g--g--VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD 217 (488)
|++--. ..||.+++.. + +..++-- .+.......-..+.++++ -+++.|+|.+
T Consensus 162 ~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~--------ld~~~~~~~~~~isd~~a-l~d~~lLvLE 232 (326)
T PF13449_consen 162 FAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYP--------LDPPPTAPGDNGISDIAA-LPDGRLLVLE 232 (326)
T ss_pred EEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEe--------CCccccccCCCCceeEEE-ECCCcEEEEE
Confidence 876321 1456666621 2 1111100 000000002346778884 5677899999
Q ss_pred CC-------CCeEEEEEcCC
Q 011333 218 RG-------NRAIREIQLHF 230 (488)
Q Consensus 218 ~g-------N~rIrkI~~~g 230 (488)
+. ..+|+++++..
T Consensus 233 R~~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 233 RDFSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred ccCCCCccceEEEEEEEccc
Confidence 87 34677777653
No 45
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=95.23 E-value=0.28 Score=52.44 Aligned_cols=134 Identities=19% Similarity=0.272 Sum_probs=78.3
Q ss_pred CCCceEEEEccC-CcEEEEECCCCeEEEE-----eCCCCcccccEEEecCCCCcccc--CCCccccccc----------C
Q 011333 82 GIEPYSVEVLPG-GELLILDSANSNLYRI-----SSSLSLYSRPKLVAGSAEGYSGH--VDGKPREARM----------N 143 (488)
Q Consensus 82 l~~P~GIaVd~d-G~LYVaD~~n~rI~ki-----d~~g~~~g~i~tvaG~~~G~~G~--~dG~a~~a~L----------n 143 (488)
..||.|++++|. |.||++|.+...++-- -..|+.+|=.....|. ...|. .++. ..+.+ -
T Consensus 238 ~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~--~~~g~~~~~~~-~~~~~~~p~~~~~~h~ 314 (399)
T COG2133 238 HRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQ--NYDGRAIPDGT-VVAGAIQPVYTWAPHI 314 (399)
T ss_pred cCCccceeecCCCCcEEEEecCCCcccCcccccccccCCccCCceeccCc--ccCccccCCCc-ccccccCCceeecccc
Confidence 458999999995 9999999887444111 1122223322222221 11111 0111 11111 3
Q ss_pred CcceEEEcCC-------CcEEEEECCCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEE
Q 011333 144 HPKGLTVDDR-------GNIYIADTMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLV 215 (488)
Q Consensus 144 ~P~GIAvD~d-------G~LYVAD~~N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYV 215 (488)
.|.||+|-.- |.+||+--..-.+.+.+ +++...+..+.-. + | .--.|.+|+ +..||.|||
T Consensus 315 ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~---~--d------~~gR~~dV~-v~~DGallv 382 (399)
T COG2133 315 APSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLS---G--D------LGGRPRDVA-VAPDGALLV 382 (399)
T ss_pred ccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEe---c--C------CCCcccceE-ECCCCeEEE
Confidence 4689999742 68999987777677777 5553333221100 0 0 013799998 899999999
Q ss_pred EECC-CCeEEEEEcCC
Q 011333 216 IDRG-NRAIREIQLHF 230 (488)
Q Consensus 216 aD~g-N~rIrkI~~~g 230 (488)
+|-. +++|+|+...+
T Consensus 383 ~~D~~~g~i~Rv~~~~ 398 (399)
T COG2133 383 LTDQGDGRILRVSYAG 398 (399)
T ss_pred eecCCCCeEEEecCCC
Confidence 9876 77999998653
No 46
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=95.22 E-value=0.12 Score=43.61 Aligned_cols=29 Identities=14% Similarity=0.418 Sum_probs=26.4
Q ss_pred cCCcceEEEcCCC-cEEEEECCCCEEEEEc
Q 011333 142 MNHPKGLTVDDRG-NIYIADTMNMAIRKIS 170 (488)
Q Consensus 142 Ln~P~GIAvD~dG-~LYVAD~~N~rIrkid 170 (488)
|..|+||++++++ .||||+...+.|+.+.
T Consensus 53 ~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~ 82 (86)
T PF01731_consen 53 FSFANGIAISPDKKYLYVASSLAHSIHVYK 82 (86)
T ss_pred CCCCceEEEcCCCCEEEEEeccCCeEEEEE
Confidence 8889999999977 5999999999999886
No 47
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=95.17 E-value=0.18 Score=53.31 Aligned_cols=99 Identities=14% Similarity=0.179 Sum_probs=65.7
Q ss_pred cEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEECCCCEEEEEc--C
Q 011333 95 ELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTMNMAIRKIS--D 171 (488)
Q Consensus 95 ~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~~N~rIrkid--~ 171 (488)
-+||++.+.+.|..||..+.. .+..+... ..-+.++++.+||+ +||+.. .+.|.+|| .
T Consensus 7 l~~V~~~~~~~v~viD~~t~~--~~~~i~~~----------------~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~ 67 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNK--VVARIPTG----------------GAPHAGLKFSPDGRYLYVANR-DGTVSVIDLAT 67 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-S--EEEEEE-S----------------TTEEEEEE-TT-SSEEEEEET-TSEEEEEETTS
T ss_pred EEEEEecCCCEEEEEECCCCe--EEEEEcCC----------------CCceeEEEecCCCCEEEEEcC-CCeEEEEECCc
Confidence 356889999999999987521 23333221 11145688899996 999986 57999999 3
Q ss_pred CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333 172 SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF 230 (488)
Q Consensus 172 gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g 230 (488)
+. +.++.-+. .|.++++..+...|||++...+.|..||...
T Consensus 68 ~~~v~~i~~G~------------------~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t 109 (369)
T PF02239_consen 68 GKVVATIKVGG------------------NPRGIAVSPDGKYVYVANYEPGTVSVIDAET 109 (369)
T ss_dssp SSEEEEEE-SS------------------EEEEEEE--TTTEEEEEEEETTEEEEEETTT
T ss_pred ccEEEEEecCC------------------CcceEEEcCCCCEEEEEecCCCceeEecccc
Confidence 44 55554331 5789995544557899999999999999765
No 48
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=95.07 E-value=1.4 Score=45.72 Aligned_cols=183 Identities=17% Similarity=0.188 Sum_probs=98.6
Q ss_pred ceeccceeEEeeecCcceEEeCCCcccccCCceeEEeecCCCCCCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccc
Q 011333 39 GVSVLMKWLWSLKTTTKTAITGRPMMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSR 118 (488)
Q Consensus 39 ~a~~~~~~i~~~~~~t~~~iaG~~~~~~~dG~~~~~~~~G~~~l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~ 118 (488)
.+.+...+||.+........++.....++.=|......-. ....-+.|++ .++.+++.++.-+++-.+++..++.-.
T Consensus 61 l~~~t~~qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~T--GdidiHdia~-~~~~l~fVNT~fSCLatl~~~~SF~P~ 137 (335)
T TIGR03032 61 LTLGTRYQLWRFANVDNLLPAGQTHPGYDRLYVPRASYVT--GDIDAHDLAL-GAGRLLFVNTLFSCLATVSPDYSFVPL 137 (335)
T ss_pred EEEEEcceeEEcccccccccccccCCCCCeEEeeeeeeec--cCcchhheee-cCCcEEEEECcceeEEEECCCCccccc
Confidence 4456668889873333322222211112211222222111 1235678888 678999999999999999988654211
Q ss_pred cEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC------EEEEEcCCC-cEEEeCCccCCCCCCCCC
Q 011333 119 PKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM------AIRKISDSG-VTTIAGGKWGRGGGHVDG 191 (488)
Q Consensus 119 i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~------rIrkid~gg-VttIaGg~~g~~~g~~dG 191 (488)
.. +...+.. +.+- =.+-+|+|++...--||+--+.. |=.+. +|+ +.-|..+.
T Consensus 138 Wk-----PpFIs~l----a~eD-RCHLNGlA~~~g~p~yVTa~~~sD~~~gWR~~~~-~gG~vidv~s~e---------- 196 (335)
T TIGR03032 138 WK-----PPFISKL----APED-RCHLNGMALDDGEPRYVTALSQSDVADGWREGRR-DGGCVIDIPSGE---------- 196 (335)
T ss_pred cC-----Ccccccc----CccC-ceeecceeeeCCeEEEEEEeeccCCccccccccc-CCeEEEEeCCCC----------
Confidence 11 0011110 0000 24668999974334777542210 11111 233 22222111
Q ss_pred CcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC-CCceEEeccCCCcceEEEE
Q 011333 192 PSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH-FDDCAYQYGSSFPLGIAVL 248 (488)
Q Consensus 192 ~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~-g~~~~~~~~~g~P~GIav~ 248 (488)
....-|..|.+--+ -+|+|||+|++.+.|.+++++ |.......-.++|.|++..
T Consensus 197 -vl~~GLsmPhSPRW--hdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~ 251 (335)
T TIGR03032 197 -VVASGLSMPHSPRW--YQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA 251 (335)
T ss_pred -EEEcCccCCcCCcE--eCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee
Confidence 01112556666665 358999999999999999997 6655555666788888887
No 49
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=94.86 E-value=0.26 Score=54.32 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=52.0
Q ss_pred CCCCceEEEEcc-CCcEEEEECCCC----------------eEEEEeCCCC----cccccEEEe--cCCCCccccCCCcc
Q 011333 81 LGIEPYSVEVLP-GGELLILDSANS----------------NLYRISSSLS----LYSRPKLVA--GSAEGYSGHVDGKP 137 (488)
Q Consensus 81 ~l~~P~GIaVd~-dG~LYVaD~~n~----------------rI~kid~~g~----~~g~i~tva--G~~~G~~G~~dG~a 137 (488)
.+..|.+|++.+ .|++|++.+.|. +|+|+-+.+. ...++.+++ |.+.-..+.....-
T Consensus 415 ~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~ 494 (616)
T COG3211 415 PMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANI 494 (616)
T ss_pred cccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCc
Confidence 367999999998 678999987654 6888877642 111333333 33211111000001
Q ss_pred cccccCCcceEEEcCCCcEEEEECCC
Q 011333 138 REARMNHPKGLTVDDRGNIYIADTMN 163 (488)
Q Consensus 138 ~~a~Ln~P~GIAvD~dG~LYVAD~~N 163 (488)
...-|+.|-+|+||+.|+|||+.-++
T Consensus 495 ~~~~f~~PDnl~fD~~GrLWi~TDg~ 520 (616)
T COG3211 495 NANWFNSPDNLAFDPWGRLWIQTDGS 520 (616)
T ss_pred ccccccCCCceEECCCCCEEEEecCC
Confidence 11458999999999999999986443
No 50
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=94.79 E-value=0.58 Score=49.30 Aligned_cols=66 Identities=11% Similarity=0.133 Sum_probs=46.4
Q ss_pred EEEcCCC-cEEEE-EC--------CCCEEEEEcC--CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eE
Q 011333 148 LTVDDRG-NIYIA-DT--------MNMAIRKISD--SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SL 213 (488)
Q Consensus 148 IAvD~dG-~LYVA-D~--------~N~rIrkid~--gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G-~L 213 (488)
|+++++| .+||+ .. ..+.|..||. +. +..|.-+ ..|++|++..+.. .|
T Consensus 253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG------------------~~~~~iavS~Dgkp~l 314 (352)
T TIGR02658 253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG------------------HEIDSINVSQDAKPLL 314 (352)
T ss_pred EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC------------------CceeeEEECCCCCeEE
Confidence 9999876 69994 32 2368999993 33 3444432 2688999544445 68
Q ss_pred EEEECCCCeEEEEEcCCC
Q 011333 214 LVIDRGNRAIREIQLHFD 231 (488)
Q Consensus 214 YVaD~gN~rIrkI~~~g~ 231 (488)
|+++..++.|..||....
T Consensus 315 yvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 315 YALSTGDKTLYIFDAETG 332 (352)
T ss_pred EEeCCCCCcEEEEECcCC
Confidence 999988999999997653
No 51
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=94.73 E-value=0.1 Score=37.81 Aligned_cols=41 Identities=24% Similarity=0.395 Sum_probs=32.6
Q ss_pred CcEEEEECCCC-eEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC
Q 011333 94 GELLILDSANS-NLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD 152 (488)
Q Consensus 94 G~LYVaD~~n~-rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~ 152 (488)
|.||-+|...+ .|.+.+.+|+ ...+++.. .+..|.|||||.
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs---~~~~vi~~---------------~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGS---NRRTVISD---------------DLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTST---SEEEEEES---------------STSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCC---CeEEEEEC---------------CCCCcCEEEECC
Confidence 57999999999 9999999974 34555443 188999999984
No 52
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.60 E-value=0.12 Score=52.73 Aligned_cols=64 Identities=16% Similarity=0.322 Sum_probs=47.9
Q ss_pred CceEEEEccCCcEEEEECCCCeEEEEeCCCCcc-cccEEEecCCCCccccCCCcccccccCCcceEEEcC--CCcEEEEE
Q 011333 84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLY-SRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD--RGNIYIAD 160 (488)
Q Consensus 84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~-g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~--dG~LYVAD 160 (488)
.-.|+++|++|.||+++...+.|.++++.+... ....+++-.. ..|..|.+++++. +|.|||.-
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~-------------~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDP-------------RTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-C-------------C-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcC-------------ceeeccceeeeccccCceEEEEE
Confidence 457999999999999999999999999985321 1345554321 2389999999999 99999976
No 53
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=94.48 E-value=2.8 Score=44.67 Aligned_cols=110 Identities=16% Similarity=0.179 Sum_probs=63.1
Q ss_pred ccCCcceEEEc---CCCcEEE--EECCCCEEEEEc-----CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCC
Q 011333 141 RMNHPKGLTVD---DRGNIYI--ADTMNMAIRKIS-----DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSS 210 (488)
Q Consensus 141 ~Ln~P~GIAvD---~dG~LYV--AD~~N~rIrkid-----~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~ 210 (488)
.+..|.|+|+- .+|.+|+ .+. ++++..+. ++.+....-.... .-..+-++++.|..
T Consensus 154 ~~~e~yGlcly~~~~~g~~ya~v~~k-~G~~~Qy~L~~~~~g~v~~~lVR~f~-------------~~sQ~EGCVVDDe~ 219 (381)
T PF02333_consen 154 DLSEPYGLCLYRSPSTGALYAFVNGK-DGRVEQYELTDDGDGKVSATLVREFK-------------VGSQPEGCVVDDET 219 (381)
T ss_dssp SSSSEEEEEEEE-TTT--EEEEEEET-TSEEEEEEEEE-TTSSEEEEEEEEEE--------------SS-EEEEEEETTT
T ss_pred ccccceeeEEeecCCCCcEEEEEecC-CceEEEEEEEeCCCCcEeeEEEEEec-------------CCCcceEEEEeccc
Confidence 36778999984 2566554 443 46665543 2323211100000 01357788878889
Q ss_pred CeEEEEECCCCeEEEEEcCCCce---EE---eccC---CCcceEEEEecCCceEEEEEEEEecc
Q 011333 211 CSLLVIDRGNRAIREIQLHFDDC---AY---QYGS---SFPLGIAVLLAAGFFGYMLALLQRRV 265 (488)
Q Consensus 211 G~LYVaD~gN~rIrkI~~~g~~~---~~---~~~~---g~P~GIav~~g~g~~Gy~~a~l~~~~ 265 (488)
+.|||++- +.-||++..+.+.. .. ..+. .-..||++.-+...-||++++-|+.-
T Consensus 220 g~LYvgEE-~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~ 282 (381)
T PF02333_consen 220 GRLYVGEE-DVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDN 282 (381)
T ss_dssp TEEEEEET-TTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGT
T ss_pred CCEEEecC-ccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCC
Confidence 99999996 57999999874322 11 1121 24568999877667899999888653
No 54
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=94.36 E-value=2.6 Score=45.17 Aligned_cols=160 Identities=21% Similarity=0.237 Sum_probs=85.6
Q ss_pred CCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcc----cccEEEecCCCCccccCCCc---ccccccCCcceEEEcCCC
Q 011333 82 GIEPYSVEVLPGGELLILDSANSNLYRISSSLSLY----SRPKLVAGSAEGYSGHVDGK---PREARMNHPKGLTVDDRG 154 (488)
Q Consensus 82 l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~----g~i~tvaG~~~G~~G~~dG~---a~~a~Ln~P~GIAvD~dG 154 (488)
+.+|++++..|+|.+.|+....++++.+....... +...++.. +..|..+.. --...++.|.+++.- .+
T Consensus 66 Le~p~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~---~~~Gll~~al~~~fa~~~~~~~~~a~~-~~ 141 (399)
T COG2133 66 LEHPWGLARLPDGVLLVTERPTGRLRLISDGGSASPPVSTVPIVLLR---GQGGLLDIALSPDFAQGRLVYFGISEP-GG 141 (399)
T ss_pred ccCchhheecCCceEEEEccCCccEEEecCCCcccccccccceEEec---cCCCccceEecccccccceeeeEEEee-cC
Confidence 56999999999997777777667888776443210 11111111 111211110 011236789999985 66
Q ss_pred cEEEEECCCCEEEEEcCC--Cc---EEEe-CCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC--------
Q 011333 155 NIYIADTMNMAIRKISDS--GV---TTIA-GGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN-------- 220 (488)
Q Consensus 155 ~LYVAD~~N~rIrkid~g--gV---ttIa-Gg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN-------- 220 (488)
.+|++.+ ..+-+++.+ ++ .+|. ..+. .. ..+=..|+ ++++|.|||+=-.+
T Consensus 142 ~~~~~n~--~~~~~~~~g~~~l~~~~~i~~~lP~------------~~-~H~g~~l~-f~pDG~Lyvs~G~~~~~~~aq~ 205 (399)
T COG2133 142 GLYVANR--VAIGRLPGGDTKLSEPKVIFRGIPK------------GG-HHFGGRLV-FGPDGKLYVTTGSNGDPALAQD 205 (399)
T ss_pred CceEEEE--EEEEEcCCCccccccccEEeecCCC------------CC-CcCcccEE-ECCCCcEEEEeCCCCCcccccC
Confidence 7888874 455666622 22 1222 1111 11 22334577 78999999985443
Q ss_pred -----CeEEEEEcCCC---------ceEEeccCCCcceEEEEecCCceEEEEEEEEec
Q 011333 221 -----RAIREIQLHFD---------DCAYQYGSSFPLGIAVLLAAGFFGYMLALLQRR 264 (488)
Q Consensus 221 -----~rIrkI~~~g~---------~~~~~~~~g~P~GIav~~g~g~~Gy~~a~l~~~ 264 (488)
+.|.+++..+. ...+..+..-|.|++.... -|-+++.-+.+
T Consensus 206 ~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~---tg~Lw~~e~g~ 260 (399)
T COG2133 206 NVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPV---TGALWTTEHGP 260 (399)
T ss_pred ccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCC---CCcEEEEecCC
Confidence 34455554431 1123445556777777642 24455555555
No 55
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.30 E-value=0.13 Score=52.59 Aligned_cols=67 Identities=24% Similarity=0.408 Sum_probs=45.8
Q ss_pred ceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEEC
Q 011333 85 PYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT 161 (488)
Q Consensus 85 P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~ 161 (488)
-.|+.+++ .|.|+|.....++++.++..|...+.++... |..|- ....-+|.|||.|++|+|||+--
T Consensus 235 vSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~----g~~gL------~~dipqaEGiamDd~g~lYIvSE 302 (316)
T COG3204 235 VSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTK----GNHGL------SSDIPQAEGIAMDDDGNLYIVSE 302 (316)
T ss_pred cccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEecc----CCCCC------cccCCCcceeEECCCCCEEEEec
Confidence 34555664 6778888888899999999864333333332 33332 22367899999999999999864
No 56
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.26 E-value=2.5 Score=43.84 Aligned_cols=137 Identities=9% Similarity=0.033 Sum_probs=72.2
Q ss_pred CCCCCceEEEEccCCcEEEEECCCCeEEEEeCC-----CCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCC
Q 011333 80 KLGIEPYSVEVLPGGELLILDSANSNLYRISSS-----LSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG 154 (488)
Q Consensus 80 ~~l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~-----g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG 154 (488)
..+.+|+||++.|.|-+||+|.+++....++.+ +.....+.++-+. .+. ..-..|+||.+....
T Consensus 20 p~L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~-~~~----------~~~~~PTGiVfN~~~ 88 (336)
T TIGR03118 20 PGLRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAP-PPL----------AAEGTPTGQVFNGSD 88 (336)
T ss_pred ccccccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCC-CCC----------CCCCCccEEEEeCCC
Confidence 346799999999999999999999998888876 2110111111111 011 112348999887544
Q ss_pred cEEEEECCCC---E-EEEEcCCCcEEEeCCccCC----CC-CCCCCCcccccCCCCCeeEEECC--CCeEEEEECCCCeE
Q 011333 155 NIYIADTMNM---A-IRKISDSGVTTIAGGKWGR----GG-GHVDGPSEDAKFSNDFDVVYIGS--SCSLLVIDRGNRAI 223 (488)
Q Consensus 155 ~LYVAD~~N~---r-Irkid~ggVttIaGg~~g~----~~-g~~dG~~~~a~f~~P~gIa~vd~--~G~LYVaD~gN~rI 223 (488)
..-|+..... + |..-++|.|+-+...-... .. -.+++. ..+-+ .|+|+... .+.||.+|..+++|
T Consensus 89 ~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~-~gavY---kGLAi~~~~~~~~LYaadF~~g~I 164 (336)
T TIGR03118 89 TFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQ-QGNVY---KGLAVGPTGGGDYLYAANFRQGRI 164 (336)
T ss_pred ceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCC-Cccee---eeeEEeecCCCceEEEeccCCCce
Confidence 4333331111 1 1111244455444210000 00 000000 00111 45664322 46899999999999
Q ss_pred EEEEcCCC
Q 011333 224 REIQLHFD 231 (488)
Q Consensus 224 rkI~~~g~ 231 (488)
.+++....
T Consensus 165 DVFd~~f~ 172 (336)
T TIGR03118 165 DVFKGSFR 172 (336)
T ss_pred EEecCccc
Confidence 99986654
No 57
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.11 E-value=1 Score=48.71 Aligned_cols=113 Identities=17% Similarity=0.163 Sum_probs=79.5
Q ss_pred ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333 85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM 164 (488)
Q Consensus 85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~ 164 (488)
-.++++.++|.+.++-.....|+.++..... ..+.++.|. -+.-+.+++.++|+++++=...+
T Consensus 206 v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~-~~~~~l~gH----------------~~~v~~~~f~p~g~~i~Sgs~D~ 268 (456)
T KOG0266|consen 206 VSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG-RNLKTLKGH----------------STYVTSVAFSPDGNLLVSGSDDG 268 (456)
T ss_pred eeeeEECCCCcEEEEecCCceEEEeeccCCC-eEEEEecCC----------------CCceEEEEecCCCCEEEEecCCC
Confidence 3678889999988888888899999883110 234555554 23357899999999999888888
Q ss_pred EEEEEc-CC-C-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 011333 165 AIRKIS-DS-G-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD 232 (488)
Q Consensus 165 rIrkid-~g-g-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~ 232 (488)
.||..+ .+ . +.++.+... .-.+++ +..+++++++-...+.|+.++.....
T Consensus 269 tvriWd~~~~~~~~~l~~hs~-----------------~is~~~-f~~d~~~l~s~s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 269 TVRIWDVRTGECVRKLKGHSD-----------------GISGLA-FSPDGNLLVSASYDGTIRVWDLETGS 321 (456)
T ss_pred cEEEEeccCCeEEEeeeccCC-----------------ceEEEE-ECCCCCEEEEcCCCccEEEEECCCCc
Confidence 999888 33 3 445544321 124566 67777777777778888888888765
No 58
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=93.91 E-value=0.12 Score=36.06 Aligned_cols=29 Identities=31% Similarity=0.378 Sum_probs=26.1
Q ss_pred cCCcceEEEcCCC-cEEEEECCCCEEEEEc
Q 011333 142 MNHPKGLTVDDRG-NIYIADTMNMAIRKIS 170 (488)
Q Consensus 142 Ln~P~GIAvD~dG-~LYVAD~~N~rIrkid 170 (488)
+..|+|||+|+.+ .||.+|...+.|.+.+
T Consensus 8 ~~~~~~la~d~~~~~lYw~D~~~~~I~~~~ 37 (43)
T smart00135 8 LGHPNGLAVDWIEGRLYWTDWGLDVIEVAN 37 (43)
T ss_pred CCCcCEEEEeecCCEEEEEeCCCCEEEEEe
Confidence 7889999999965 6999999999999887
No 59
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.02 E-value=12 Score=38.56 Aligned_cols=148 Identities=20% Similarity=0.244 Sum_probs=82.1
Q ss_pred CCCceEEEEccCCcEEEEECCCCeEEEEeCCCCc----ccccEEEecCCC-CccccCCCcccccccCCcceEEEcCCC-c
Q 011333 82 GIEPYSVEVLPGGELLILDSANSNLYRISSSLSL----YSRPKLVAGSAE-GYSGHVDGKPREARMNHPKGLTVDDRG-N 155 (488)
Q Consensus 82 l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~----~g~i~tvaG~~~-G~~G~~dG~a~~a~Ln~P~GIAvD~dG-~ 155 (488)
+..|.+|+.-.+|...++|--..+++++..+-.. ......-.|... ..+| =.|+|.|+.. .
T Consensus 128 ~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~G-------------fEGlA~d~~~~~ 194 (316)
T COG3204 128 FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKG-------------FEGLAWDPVDHR 194 (316)
T ss_pred cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcC-------------ceeeecCCCCce
Confidence 5589999988888888889888888888765321 000111122210 1122 2589999854 6
Q ss_pred EEEEECCC-CEEEEEcC--CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 011333 156 IYIADTMN-MAIRKISD--SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD 232 (488)
Q Consensus 156 LYVAD~~N-~rIrkid~--ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~ 232 (488)
+||+--.| -+|.+++. ..++.-+..... .....-+..-.++.+-...++|+|---..++|.+++..|+.
T Consensus 195 l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~--------~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~ 266 (316)
T COG3204 195 LFVAKERNPIGIFEVTQSPSSLSVHASLDPT--------ADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV 266 (316)
T ss_pred EEEEEccCCcEEEEEecCCcccccccccCcc--------cccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCe
Confidence 88886433 45665551 112111111000 00011123345666544567788777777888888888764
Q ss_pred eEE----------eccCCCcceEEEEec
Q 011333 233 CAY----------QYGSSFPLGIAVLLA 250 (488)
Q Consensus 233 ~~~----------~~~~g~P~GIav~~g 250 (488)
... ...-..+.||++|..
T Consensus 267 ~~~lsL~~g~~gL~~dipqaEGiamDd~ 294 (316)
T COG3204 267 IELLSLTKGNHGLSSDIPQAEGIAMDDD 294 (316)
T ss_pred eeeEEeccCCCCCcccCCCcceeEECCC
Confidence 322 122236789999966
No 60
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=92.88 E-value=0.98 Score=38.13 Aligned_cols=33 Identities=18% Similarity=0.060 Sum_probs=27.9
Q ss_pred CCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333 198 FSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF 230 (488)
Q Consensus 198 f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g 230 (488)
|..|+||++.++...|||++...+.|+.+..+.
T Consensus 53 ~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 53 FSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 778999996556778999999999999987653
No 61
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=92.72 E-value=0.33 Score=33.83 Aligned_cols=35 Identities=14% Similarity=-0.027 Sum_probs=30.4
Q ss_pred cCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 011333 197 KFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD 231 (488)
Q Consensus 197 ~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~ 231 (488)
.+..|.++|+....+.||.+|...+.|.+.+.+|.
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 46789999977777899999999999999998874
No 62
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.62 E-value=2.1 Score=43.37 Aligned_cols=111 Identities=13% Similarity=0.113 Sum_probs=70.1
Q ss_pred CceEEEEccCCcEEEEEC--CCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEEC
Q 011333 84 EPYSVEVLPGGELLILDS--ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT 161 (488)
Q Consensus 84 ~P~GIaVd~dG~LYVaD~--~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~ 161 (488)
.-+|+.+..+|.||.+.. +.++|++++.+++ ++....--.... --.||++- ++.||.--+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg---~~~~~~~l~~~~--------------FgEGit~~-~d~l~qLTW 107 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETG---KVLQSVPLPPRY--------------FGEGITIL-GDKLYQLTW 107 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTS---SEEEEEE-TTT----------------EEEEEEE-TTEEEEEES
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCC---cEEEEEECCccc--------------cceeEEEE-CCEEEEEEe
Confidence 457888878899999975 4468999999873 322221111011 13578887 568999999
Q ss_pred CCCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333 162 MNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF 230 (488)
Q Consensus 162 ~N~rIrkid~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g 230 (488)
.++...++|......+..-.. -..-+||+ .| ...||++| |+.+|+.+++..
T Consensus 108 k~~~~f~yd~~tl~~~~~~~y---------------~~EGWGLt-~d-g~~Li~SD-GS~~L~~~dP~~ 158 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFPY---------------PGEGWGLT-SD-GKRLIMSD-GSSRLYFLDPET 158 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE----------------SSS--EEE-EC-SSCEEEE--SSSEEEEE-TTT
T ss_pred cCCeEEEEccccceEEEEEec---------------CCcceEEE-cC-CCEEEEEC-CccceEEECCcc
Confidence 999999999655433321100 01348888 34 45788888 478999988763
No 63
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=92.47 E-value=1.2 Score=49.32 Aligned_cols=79 Identities=23% Similarity=0.416 Sum_probs=51.4
Q ss_pred cccCCcceEEEcC-CCcEEEEECCCC-------------------EEEEEc-CCC--------cEEE-eCCccCCCCCCC
Q 011333 140 ARMNHPKGLTVDD-RGNIYIADTMNM-------------------AIRKIS-DSG--------VTTI-AGGKWGRGGGHV 189 (488)
Q Consensus 140 a~Ln~P~GIAvD~-dG~LYVAD~~N~-------------------rIrkid-~gg--------VttI-aGg~~g~~~g~~ 189 (488)
+.|..|.||++++ +|.|||+-+.|. +|.++. .+. ..++ .++.........
T Consensus 347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~ 426 (524)
T PF05787_consen 347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG 426 (524)
T ss_pred ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence 4699999999998 579999988766 788887 221 1222 222111000111
Q ss_pred CCCcccccCCCCCeeEEECCCCeEEEEECC
Q 011333 190 DGPSEDAKFSNDFDVVYIGSSCSLLVIDRG 219 (488)
Q Consensus 190 dG~~~~a~f~~P~gIa~vd~~G~LYVaD~g 219 (488)
........|++|-.|+ ++++|+|||+.-+
T Consensus 427 ~~~~~~~~f~sPDNL~-~d~~G~LwI~eD~ 455 (524)
T PF05787_consen 427 SNKCDDNGFASPDNLA-FDPDGNLWIQEDG 455 (524)
T ss_pred cCcccCCCcCCCCceE-ECCCCCEEEEeCC
Confidence 2233456799999999 7889999888643
No 64
>PRK02888 nitrous-oxide reductase; Validated
Probab=92.33 E-value=1.6 Score=49.17 Aligned_cols=82 Identities=9% Similarity=0.112 Sum_probs=55.3
Q ss_pred CCcceEEEcCCCc-EEEEECCCCEEEEEcCCCcE-EEeCCccCCCCCCCCCCcccccC-CCCCeeEEECCCCeEEEEECC
Q 011333 143 NHPKGLTVDDRGN-IYIADTMNMAIRKISDSGVT-TIAGGKWGRGGGHVDGPSEDAKF-SNDFDVVYIGSSCSLLVIDRG 219 (488)
Q Consensus 143 n~P~GIAvD~dG~-LYVAD~~N~rIrkid~ggVt-tIaGg~~g~~~g~~dG~~~~a~f-~~P~gIa~vd~~G~LYVaD~g 219 (488)
+.|+||++++||. +||+......|.+||-..+. .+++. ....+-...+..+ ..|...+ +|.+|+.|++=.-
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~-----~~~~~~vvaevevGlGPLHTa-FDg~G~aytslf~ 394 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK-----IKPRDAVVAEPELGLGPLHTA-FDGRGNAYTTLFL 394 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc-----CCccceEEEeeccCCCcceEE-ECCCCCEEEeEee
Confidence 7899999999996 88888888999999933321 11111 0000100011111 3689999 6889999998888
Q ss_pred CCeEEEEEcCC
Q 011333 220 NRAIREIQLHF 230 (488)
Q Consensus 220 N~rIrkI~~~g 230 (488)
...|-++++..
T Consensus 395 dsqv~kwn~~~ 405 (635)
T PRK02888 395 DSQIVKWNIEA 405 (635)
T ss_pred cceeEEEehHH
Confidence 88999998764
No 65
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.28 E-value=3.9 Score=42.23 Aligned_cols=31 Identities=29% Similarity=0.574 Sum_probs=27.9
Q ss_pred CcceEEEcCCCcEEEEECCC------CEEEEEc-CCCc
Q 011333 144 HPKGLTVDDRGNIYIADTMN------MAIRKIS-DSGV 174 (488)
Q Consensus 144 ~P~GIAvD~dG~LYVAD~~N------~rIrkid-~ggV 174 (488)
.+.||+++++|.+||++-+. ++|++++ +|.+
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~ 123 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRV 123 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcc
Confidence 78899998899999999999 9999999 6554
No 66
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=91.99 E-value=1.6 Score=51.17 Aligned_cols=135 Identities=16% Similarity=0.135 Sum_probs=97.8
Q ss_pred CCCceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEEEE
Q 011333 82 GIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIA 159 (488)
Q Consensus 82 l~~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LYVA 159 (488)
...|.++++|- .+++|.+|..+..|.+.+.++. ...+++.. .+..|..+++++ .|-+|.+
T Consensus 479 ~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~---~~~vl~~~---------------~l~~~r~~~v~p~~g~~~wt 540 (877)
T KOG1215|consen 479 LCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGS---SRKVLVSK---------------DLDLPRSIAVDPEKGLMFWT 540 (877)
T ss_pred ccccCcEEEEeccCCceecccCCceeEEEEccCC---ceeEEEec---------------CCCCccceeeccccCeeEEe
Confidence 34789999987 6779999999999999987753 23344443 146799999999 7789999
Q ss_pred ECC-CCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCC-eEEEEEcCCCceE-
Q 011333 160 DTM-NMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNR-AIREIQLHFDDCA- 234 (488)
Q Consensus 160 D~~-N~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~-rIrkI~~~g~~~~- 234 (488)
|.+ ..+|.+-. ++. ..++... .+..|+++++.-.+..+|-+|.... .|.++..+|....
T Consensus 541 d~~~~~~i~ra~~dg~~~~~l~~~----------------~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~~ 604 (877)
T KOG1215|consen 541 DWGQPPRIERASLDGSERAVLVTN----------------GILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRRV 604 (877)
T ss_pred cCCCCchhhhhcCCCCCceEEEeC----------------CccCCCcceEEeecceeEEEcccCCcceeeeecCCCceEE
Confidence 987 44666655 333 3333321 1458999996666889999999888 7999999886553
Q ss_pred -EeccCCCcceEEEEec
Q 011333 235 -YQYGSSFPLGIAVLLA 250 (488)
Q Consensus 235 -~~~~~g~P~GIav~~g 250 (488)
.......|.++++-..
T Consensus 605 ~~~~~~~~p~~~~~~~~ 621 (877)
T KOG1215|consen 605 VDSEDLPHPFGLSVFED 621 (877)
T ss_pred eccccCCCceEEEEecc
Confidence 3344567888887644
No 67
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=91.56 E-value=0.74 Score=33.34 Aligned_cols=38 Identities=21% Similarity=0.154 Sum_probs=32.2
Q ss_pred CeEEEEECCCC-eEEEEEcCCCceEE--eccCCCcceEEEE
Q 011333 211 CSLLVIDRGNR-AIREIQLHFDDCAY--QYGSSFPLGIAVL 248 (488)
Q Consensus 211 G~LYVaD~gN~-rIrkI~~~g~~~~~--~~~~g~P~GIav~ 248 (488)
++||.+|.+.+ .|.+..++|..... ......|.||||+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD 41 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVD 41 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEE
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEEC
Confidence 58999999999 99999999976543 4567789999997
No 68
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=91.47 E-value=4.7 Score=41.49 Aligned_cols=132 Identities=17% Similarity=0.130 Sum_probs=80.0
Q ss_pred CCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEc----CCCcEEE
Q 011333 83 IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVD----DRGNIYI 158 (488)
Q Consensus 83 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD----~dG~LYV 158 (488)
.+...|..+.+|+++|+-...+.|++|++.+ |.+....|...+ ++ =......|..-.+..+- .++.|-|
T Consensus 144 ~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~t---G~I~W~lgG~~~--~d--f~~~~~~f~~QHdar~~~~~~~~~~Isl 216 (299)
T PF14269_consen 144 FHINSVDKDDDGDYLISSRNTSTIYKIDPST---GKIIWRLGGKRN--SD--FTLPATNFSWQHDARFLNESNDDGTISL 216 (299)
T ss_pred cEeeeeeecCCccEEEEecccCEEEEEECCC---CcEEEEeCCCCC--Cc--ccccCCcEeeccCCEEeccCCCCCEEEE
Confidence 3566778888999999999999999999776 567777765311 11 00123446555555555 5677777
Q ss_pred EEC----------CCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEE
Q 011333 159 ADT----------MNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREI 226 (488)
Q Consensus 159 AD~----------~N~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI 226 (488)
-|- ...+|..++ ... ++.+.... . ..++. .+.. .-++- .-++|+++|....++++..+
T Consensus 217 FDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~-~----~~~~~--~s~~--~G~~Q-~L~nGn~li~~g~~g~~~E~ 286 (299)
T PF14269_consen 217 FDNANSDFNGTEPSRGLVLELDPETMTVTLVREYS-D----HPDGF--YSPS--QGSAQ-RLPNGNVLIGWGNNGRISEF 286 (299)
T ss_pred EcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEee-c----CCCcc--cccC--CCcce-ECCCCCEEEecCCCceEEEE
Confidence 775 235677777 322 33322111 0 00010 0000 01122 23569999999999999999
Q ss_pred EcCCC
Q 011333 227 QLHFD 231 (488)
Q Consensus 227 ~~~g~ 231 (488)
+.+|+
T Consensus 287 ~~~G~ 291 (299)
T PF14269_consen 287 TPDGE 291 (299)
T ss_pred CCCCC
Confidence 99885
No 69
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=91.33 E-value=4.6 Score=37.25 Aligned_cols=106 Identities=18% Similarity=0.167 Sum_probs=59.9
Q ss_pred ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333 85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM 164 (488)
Q Consensus 85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~ 164 (488)
...+++.+++..+++-..++.|..++.... ....... + .-.....+++++++.++++-..++
T Consensus 180 i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~------~---------~~~~i~~~~~~~~~~~~~~~~~~~ 241 (289)
T cd00200 180 VNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---KCLGTLR------G---------HENGVNSVAFSPDGYLLASGSEDG 241 (289)
T ss_pred cceEEECCCcCEEEEecCCCcEEEEECCCC---ceecchh------h---------cCCceEEEEEcCCCcEEEEEcCCC
Confidence 456677777743333333667777776531 1111110 0 012467899999888888877678
Q ss_pred EEEEEc-C-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEE
Q 011333 165 AIRKIS-D-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREI 226 (488)
Q Consensus 165 rIrkid-~-gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI 226 (488)
.|+.++ . +. +..+.+. -....+++ +.+++.++++-..++.|+.+
T Consensus 242 ~i~i~~~~~~~~~~~~~~~-----------------~~~i~~~~-~~~~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 242 TIRVWDLRTGECVQTLSGH-----------------TNSVTSLA-WSPDGKRLASGSADGTIRIW 288 (289)
T ss_pred cEEEEEcCCceeEEEcccc-----------------CCcEEEEE-ECCCCCEEEEecCCCeEEec
Confidence 888888 3 33 2332211 11346777 56666666666666666654
No 70
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=89.76 E-value=16 Score=33.66 Aligned_cols=110 Identities=15% Similarity=0.166 Sum_probs=65.9
Q ss_pred CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333 84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 163 (488)
Q Consensus 84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N 163 (488)
....+.+.+++.++++...++.|..++.... .....+.+. -.....+++++++.++++-..+
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~----------------~~~i~~~~~~~~~~~l~~~~~~ 156 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETG--KCLTTLRGH----------------TDWVNSVAFSPDGTFVASSSQD 156 (289)
T ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCc--EEEEEeccC----------------CCcEEEEEEcCcCCEEEEEcCC
Confidence 3566777777777777776778888887631 112222111 1236788999888777776667
Q ss_pred CEEEEEc-C-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCC
Q 011333 164 MAIRKIS-D-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHF 230 (488)
Q Consensus 164 ~rIrkid-~-gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gN~rIrkI~~~g 230 (488)
+.|+.++ . +. +..+... -.....++ ..+++ .|+++.. ++.|+.++...
T Consensus 157 ~~i~i~d~~~~~~~~~~~~~-----------------~~~i~~~~-~~~~~~~l~~~~~-~~~i~i~d~~~ 208 (289)
T cd00200 157 GTIKLWDLRTGKCVATLTGH-----------------TGEVNSVA-FSPDGEKLLSSSS-DGTIKLWDLST 208 (289)
T ss_pred CcEEEEEccccccceeEecC-----------------ccccceEE-ECCCcCEEEEecC-CCcEEEEECCC
Confidence 7888888 2 33 3333211 01345666 45555 4555544 77888888764
No 71
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.26 E-value=13 Score=40.16 Aligned_cols=115 Identities=18% Similarity=0.242 Sum_probs=76.7
Q ss_pred CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333 84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 163 (488)
Q Consensus 84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N 163 (488)
..+.+++.++|+++++-...+.|+.++..+++ .+..+.+. .+ .=+++++.++|+++++-...
T Consensus 248 ~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~--~~~~l~~h-------s~---------~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 248 YVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE--CVRKLKGH-------SD---------GISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred ceEEEEecCCCCEEEEecCCCcEEEEeccCCe--EEEeeecc-------CC---------ceEEEEECCCCCEEEEcCCC
Confidence 34889999999999998888999999987522 23333332 11 13578999999988877779
Q ss_pred CEEEEEc-CCCc----EEEeCCccCCCCCCCCCCcccccCCCC-CeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 011333 164 MAIRKIS-DSGV----TTIAGGKWGRGGGHVDGPSEDAKFSND-FDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC 233 (488)
Q Consensus 164 ~rIrkid-~ggV----ttIaGg~~g~~~g~~dG~~~~a~f~~P-~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~ 233 (488)
..|+.+| ..+. .++.+... -. | ..+. ...++..+++-..++.|+-+++....+
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~---------------~~-~~~~~~-fsp~~~~ll~~~~d~~~~~w~l~~~~~ 368 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAEN---------------SA-PVTSVQ-FSPNGKYLLSASLDRTLKLWDLRSGKS 368 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCC---------------CC-ceeEEE-ECCCCcEEEEecCCCeEEEEEccCCcc
Confidence 9999999 3333 23332210 00 2 3444 667777777777777888877765433
No 72
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=88.35 E-value=5.3 Score=44.45 Aligned_cols=79 Identities=19% Similarity=0.239 Sum_probs=50.6
Q ss_pred cccCCcceEEEcC-CCcEEEEECCCC----------------EEEEEc-CC--------C--cEEEeCCccCCCCCCCCC
Q 011333 140 ARMNHPKGLTVDD-RGNIYIADTMNM----------------AIRKIS-DS--------G--VTTIAGGKWGRGGGHVDG 191 (488)
Q Consensus 140 a~Ln~P~GIAvD~-dG~LYVAD~~N~----------------rIrkid-~g--------g--VttIaGg~~g~~~g~~dG 191 (488)
+.|..|.+|++.+ .|.+|++.+.|. +|.++- .+ . +...+|.......+. ..
T Consensus 414 T~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~-~~ 492 (616)
T COG3211 414 TPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGA-SA 492 (616)
T ss_pred ccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcccccccc-cc
Confidence 4689999999998 568999998765 455554 21 1 233344322211111 11
Q ss_pred CcccccCCCCCeeEEECCCCeEEEEECCC
Q 011333 192 PSEDAKFSNDFDVVYIGSSCSLLVIDRGN 220 (488)
Q Consensus 192 ~~~~a~f~~P~gIa~vd~~G~LYVaD~gN 220 (488)
......|++|-+|+ +|+.|+|+|+.-++
T Consensus 493 ~~~~~~f~~PDnl~-fD~~GrLWi~TDg~ 520 (616)
T COG3211 493 NINANWFNSPDNLA-FDPWGRLWIQTDGS 520 (616)
T ss_pred CcccccccCCCceE-ECCCCCEEEEecCC
Confidence 12235699999999 89999999986543
No 73
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=87.43 E-value=15 Score=38.01 Aligned_cols=111 Identities=10% Similarity=0.094 Sum_probs=71.8
Q ss_pred ceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333 85 PYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 163 (488)
Q Consensus 85 P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N 163 (488)
-.+|.+.| +++.||+-........+|...+ .-+.++.|. . ..-+.|.+-|+|.-|++=..+
T Consensus 189 V~slsl~p~~~ntFvSg~cD~~aklWD~R~~--~c~qtF~gh----e------------sDINsv~ffP~G~afatGSDD 250 (343)
T KOG0286|consen 189 VMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG--QCVQTFEGH----E------------SDINSVRFFPSGDAFATGSDD 250 (343)
T ss_pred EEEEecCCCCCCeEEecccccceeeeeccCc--ceeEeeccc----c------------cccceEEEccCCCeeeecCCC
Confidence 34666777 8888888666555555655421 233444333 1 124568999999999988888
Q ss_pred CEEEEEc---CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333 164 MAIRKIS---DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH 229 (488)
Q Consensus 164 ~rIrkid---~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~ 229 (488)
...|.|| +..+.++.... ....-++|+ +..+|+|+++-..+..+.+++.-
T Consensus 251 ~tcRlyDlRaD~~~a~ys~~~---------------~~~gitSv~-FS~SGRlLfagy~d~~c~vWDtl 303 (343)
T KOG0286|consen 251 ATCRLYDLRADQELAVYSHDS---------------IICGITSVA-FSKSGRLLFAGYDDFTCNVWDTL 303 (343)
T ss_pred ceeEEEeecCCcEEeeeccCc---------------ccCCceeEE-EcccccEEEeeecCCceeEeecc
Confidence 8889888 33465554321 112336788 67889999997777777777643
No 74
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=87.34 E-value=15 Score=42.12 Aligned_cols=112 Identities=13% Similarity=0.160 Sum_probs=78.7
Q ss_pred CCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECC
Q 011333 83 IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM 162 (488)
Q Consensus 83 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~ 162 (488)
..-..++..|||.+.++-...++|..++...++ .+.|+-.. -+.-+++.+..+|+..++-+.
T Consensus 351 ~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf--C~vTFteH----------------ts~Vt~v~f~~~g~~llssSL 412 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF--CFVTFTEH----------------TSGVTAVQFTARGNVLLSSSL 412 (893)
T ss_pred cceeeEEECCCCcEEEeccCCCcEEEEeccCce--EEEEeccC----------------CCceEEEEEEecCCEEEEeec
Confidence 355678889999999999999999999987533 23333222 122357899999999999999
Q ss_pred CCEEEEEc-CCC--cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC-CCCeEEEEEcC
Q 011333 163 NMAIRKIS-DSG--VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR-GNRAIREIQLH 229 (488)
Q Consensus 163 N~rIrkid-~gg--VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~-gN~rIrkI~~~ 229 (488)
.++||..| ... ..|+..- ...+| .+|| +|++|.|.+|-. .+-.|.+++..
T Consensus 413 DGtVRAwDlkRYrNfRTft~P-------------~p~Qf---scva-vD~sGelV~AG~~d~F~IfvWS~q 466 (893)
T KOG0291|consen 413 DGTVRAWDLKRYRNFRTFTSP-------------EPIQF---SCVA-VDPSGELVCAGAQDSFEIFVWSVQ 466 (893)
T ss_pred CCeEEeeeecccceeeeecCC-------------Cceee---eEEE-EcCCCCEEEeeccceEEEEEEEee
Confidence 99999999 332 4555431 11234 5788 899999888765 34567777654
No 75
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=87.31 E-value=0.47 Score=33.81 Aligned_cols=20 Identities=35% Similarity=0.693 Sum_probs=16.9
Q ss_pred CCcceEEEcCCCcEEEEECC
Q 011333 143 NHPKGLTVDDRGNIYIADTM 162 (488)
Q Consensus 143 n~P~GIAvD~dG~LYVAD~~ 162 (488)
..+++|++|++|+|||+=..
T Consensus 13 ~~~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred eeEEEEEECCCCCEEEEEee
Confidence 36899999999999998543
No 76
>PRK02888 nitrous-oxide reductase; Validated
Probab=87.00 E-value=1.8 Score=48.71 Aligned_cols=76 Identities=20% Similarity=0.178 Sum_probs=54.7
Q ss_pred CCCceEEEEccCCc-EEEEECCCCeEEEEeCCCCcc------cccEEEecCCCCccccCCCcccccccCCcceEEEcCCC
Q 011333 82 GIEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLY------SRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG 154 (488)
Q Consensus 82 l~~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~------g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG 154 (488)
..+|+||+++|||. +|++....+.|.+||...... .--.++++..+ -=..|...++|.+|
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve-------------vGlGPLHTaFDg~G 386 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE-------------LGLGPLHTAFDGRG 386 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec-------------cCCCcceEEECCCC
Confidence 46999999999998 888888888999999863110 00012222210 01358899999999
Q ss_pred cEEEEECCCCEEEEEc
Q 011333 155 NIYIADTMNMAIRKIS 170 (488)
Q Consensus 155 ~LYVAD~~N~rIrkid 170 (488)
+.|++=.....|.|++
T Consensus 387 ~aytslf~dsqv~kwn 402 (635)
T PRK02888 387 NAYTTLFLDSQIVKWN 402 (635)
T ss_pred CEEEeEeecceeEEEe
Confidence 9999877778999988
No 77
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=86.45 E-value=25 Score=36.38 Aligned_cols=119 Identities=11% Similarity=0.014 Sum_probs=72.9
Q ss_pred CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333 84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 163 (488)
Q Consensus 84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N 163 (488)
.+--.|+||+|.++++-.++..|..+|...-..|=..++ . ..+ .....=++|-+.++|...+.-+.+
T Consensus 142 ~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf-~-------i~~-----~~~~ew~~l~FS~dGK~iLlsT~~ 208 (311)
T KOG1446|consen 142 GRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTF-S-------ITD-----NDEAEWTDLEFSPDGKSILLSTNA 208 (311)
T ss_pred CCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeE-c-------cCC-----CCccceeeeEEcCCCCEEEEEeCC
Confidence 344567888888888877777888777641000111111 0 001 113344689999999855555567
Q ss_pred CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333 164 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF 230 (488)
Q Consensus 164 ~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g 230 (488)
+.|..+| +|. ..++.+-.. ..+.|.+-+ ..+++..+++-.++++|..+.++.
T Consensus 209 s~~~~lDAf~G~~~~tfs~~~~--------------~~~~~~~a~-ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 209 SFIYLLDAFDGTVKSTFSGYPN--------------AGNLPLSAT-FTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred CcEEEEEccCCcEeeeEeeccC--------------CCCcceeEE-ECCCCcEEEEecCCCcEEEEEcCC
Confidence 8888888 666 355554321 123454445 567788888888889998888753
No 78
>PTZ00421 coronin; Provisional
Probab=86.19 E-value=51 Score=36.36 Aligned_cols=113 Identities=12% Similarity=0.086 Sum_probs=68.4
Q ss_pred ceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcc-c----ccEEEecCCCCccccCCCcccccccCCcceEEEcCCC-cEE
Q 011333 85 PYSVEVLP-GGELLILDSANSNLYRISSSLSLY-S----RPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NIY 157 (488)
Q Consensus 85 P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~-g----~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG-~LY 157 (488)
-.++++++ +++++++-...+.|+.++...... . .+..+.| + -..-..|++.+++ +++
T Consensus 78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g-------H---------~~~V~~l~f~P~~~~iL 141 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG-------H---------TKKVGIVSFHPSAMNVL 141 (493)
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecC-------C---------CCcEEEEEeCcCCCCEE
Confidence 46788888 788778777788898888653110 0 0112211 1 1124568888875 577
Q ss_pred EEECCCCEEEEEc-C-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 011333 158 IADTMNMAIRKIS-D-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD 231 (488)
Q Consensus 158 VAD~~N~rIrkid-~-gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~ 231 (488)
++=...+.|+.+| . +. +.++.+.. ..-.+|+ ..++|.++++-..++.|+.+++...
T Consensus 142 aSgs~DgtVrIWDl~tg~~~~~l~~h~-----------------~~V~sla-~spdG~lLatgs~Dg~IrIwD~rsg 200 (493)
T PTZ00421 142 ASAGADMVVNVWDVERGKAVEVIKCHS-----------------DQITSLE-WNLDGSLLCTTSKDKKLNIIDPRDG 200 (493)
T ss_pred EEEeCCCEEEEEECCCCeEEEEEcCCC-----------------CceEEEE-EECCCCEEEEecCCCEEEEEECCCC
Confidence 7666678888888 3 33 33332211 1235666 4556777777777788888887643
No 79
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=85.71 E-value=2.3 Score=46.04 Aligned_cols=128 Identities=15% Similarity=0.151 Sum_probs=81.8
Q ss_pred CCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEEC
Q 011333 82 GIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT 161 (488)
Q Consensus 82 l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~ 161 (488)
+.-|+|+.+|.+|+.+++|-.-|.+.++.+.. +.+.++.|.. -.+| .....|+.|...+|..+|.|+++|.
T Consensus 167 lqvhyg~t~df~~~~d~TgV~mH~t~kp~pkl---a~~~L~l~~~-tvp~-----~~~~~f~~~tsc~v~~n~~ihvfa~ 237 (501)
T KOG3567|consen 167 LQVHYGLTIDFDGNYDVTGVGMHQTEKPQPKL---AKTMLLLGDG-TVPG-----EGTKHFETPTSCAVEENGPIHVFAY 237 (501)
T ss_pred EEeccccccCCCCCcccccceeeeeccCCchh---hceEEeecCC-ccCC-----CCccccCCCceEEEecCcceeeEEe
Confidence 34688888888999999999999999998874 3445554431 1111 1235588999999999999999997
Q ss_pred C-CCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCC-CeEEEEECCCCeEEEEEcC
Q 011333 162 M-NMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSS-CSLLVIDRGNRAIREIQLH 229 (488)
Q Consensus 162 ~-N~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~-G~LYVaD~gN~rIrkI~~~ 229 (488)
. |.+|.+.. .|. |.-.-.+.+-. .|. ..|.-..++..- ..+-|+|..|.+++.+-..
T Consensus 238 r~hTh~Lgk~vsG~lv~q~~~g~w~~-ig~----------r~Pq~pqlf~~v~~~~~iadgD~~~vrC~~~s 298 (501)
T KOG3567|consen 238 RCHTHILGKVVSGYLVAQKHEGHWTL-IGR----------RDPQLPQLFEPVNHIVCVADGDNQRVRCFFQS 298 (501)
T ss_pred eeeehhhcceeeeeEeeeccCcceee-ccc----------cCCCchhhhcCCCcceeeecCCceEEEEEEcc
Confidence 6 55666655 333 22111111110 111 123333333333 3788999999999998765
No 80
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=84.58 E-value=72 Score=35.49 Aligned_cols=111 Identities=20% Similarity=0.296 Sum_probs=67.4
Q ss_pred CCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCccccccc-CCcceEEEcCCCcEEEEEC
Q 011333 83 IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARM-NHPKGLTVDDRGNIYIADT 161 (488)
Q Consensus 83 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~L-n~P~GIAvD~dG~LYVAD~ 161 (488)
+.-.+++.+..++||.+-.. ..+++++..+. ++... ..-.| .+|.|+|+.++|.+.|.-.
T Consensus 364 nqI~~~~~~~~~~~~t~g~D-d~l~~~~~~~~-------------~~t~~-----~~~~lg~QP~~lav~~d~~~avv~~ 424 (603)
T KOG0318|consen 364 NQIKGMAASESGELFTIGWD-DTLRVISLKDN-------------GYTKS-----EVVKLGSQPKGLAVLSDGGTAVVAC 424 (603)
T ss_pred ceEEEEeecCCCcEEEEecC-CeEEEEecccC-------------ccccc-----ceeecCCCceeEEEcCCCCEEEEEe
Confidence 34456666666777776553 36667665421 11110 00112 5799999999986555443
Q ss_pred CCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 011333 162 MNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD 232 (488)
Q Consensus 162 ~N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~ 232 (488)
. ..|..+. .++++++--+ | .|.++| +.++++....--..+.|+.+.+.|+.
T Consensus 425 ~-~~iv~l~~~~~~~~~~~~-----------------y-~~s~vA-v~~~~~~vaVGG~Dgkvhvysl~g~~ 476 (603)
T KOG0318|consen 425 I-SDIVLLQDQTKVSSIPIG-----------------Y-ESSAVA-VSPDGSEVAVGGQDGKVHVYSLSGDE 476 (603)
T ss_pred c-CcEEEEecCCcceeeccc-----------------c-ccceEE-EcCCCCEEEEecccceEEEEEecCCc
Confidence 3 4455555 4556555321 1 577888 67778777777667789999888754
No 81
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=84.53 E-value=8.6 Score=39.08 Aligned_cols=126 Identities=18% Similarity=0.168 Sum_probs=69.0
Q ss_pred CceEEEEccCCcEEEEECCCCeEEEEeCCCC-cccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECC
Q 011333 84 EPYSVEVLPGGELLILDSANSNLYRISSSLS-LYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM 162 (488)
Q Consensus 84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~-~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~ 162 (488)
..+||+-| +..||++|. +++|+.+|+..- ..+.+.+..+ |. .+..-+-+-.- +|.||.-=..
T Consensus 131 EGWGLt~d-g~~Li~SDG-S~~L~~~dP~~f~~~~~i~V~~~----------g~----pv~~LNELE~i-~G~IyANVW~ 193 (264)
T PF05096_consen 131 EGWGLTSD-GKRLIMSDG-SSRLYFLDPETFKEVRTIQVTDN----------GR----PVSNLNELEYI-NGKIYANVWQ 193 (264)
T ss_dssp S--EEEEC-SSCEEEE-S-SSEEEEE-TTT-SEEEEEE-EET----------TE----E---EEEEEEE-TTEEEEEETT
T ss_pred cceEEEcC-CCEEEEECC-ccceEEECCcccceEEEEEEEEC----------CE----ECCCcEeEEEE-cCEEEEEeCC
Confidence 67899854 346888885 789999998742 1222222211 11 12233334333 7999999999
Q ss_pred CCEEEEEc--CCCcEEEeCCccCCC-CC-CCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333 163 NMAIRKIS--DSGVTTIAGGKWGRG-GG-HVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH 229 (488)
Q Consensus 163 N~rIrkid--~ggVttIaGg~~g~~-~g-~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~ 229 (488)
.++|.+|| +|.|..+..-..-.. .. ..+-.+.+ .--+|||+.+..+.+||+-..=..+.+|.+.
T Consensus 194 td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~---dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~ 261 (264)
T PF05096_consen 194 TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDD---DVLNGIAYDPETDRLFVTGKLWPKLYEVKLV 261 (264)
T ss_dssp SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TT---S-EEEEEEETTTTEEEEEETT-SEEEEEEEE
T ss_pred CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccC---CeeEeEeEeCCCCEEEEEeCCCCceEEEEEE
Confidence 99999999 566766554211000 00 00000111 2237999888899999998766777777654
No 82
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=84.42 E-value=21 Score=37.66 Aligned_cols=108 Identities=14% Similarity=0.181 Sum_probs=57.7
Q ss_pred CcEEEEEC----CCCeEEEEeCCCCcccccEEEecCC-CCccccCCCcccccccCCcceEEEcCCC-cEEEEECCC----
Q 011333 94 GELLILDS----ANSNLYRISSSLSLYSRPKLVAGSA-EGYSGHVDGKPREARMNHPKGLTVDDRG-NIYIADTMN---- 163 (488)
Q Consensus 94 G~LYVaD~----~n~rI~kid~~g~~~g~i~tvaG~~-~G~~G~~dG~a~~a~Ln~P~GIAvD~dG-~LYVAD~~N---- 163 (488)
.++||.|. ..+||+.+|.+.+ + +.|.. .| |.. .++++++| .+|++++.-
T Consensus 3 ~rvyV~D~~~~~~~~rv~viD~d~~---k---~lGmi~~g-------------~~~--~~~~spdgk~~y~a~T~~sR~~ 61 (342)
T PF06433_consen 3 HRVYVQDPVFFHMTSRVYVIDADSG---K---LLGMIDTG-------------FLG--NVALSPDGKTIYVAETFYSRGT 61 (342)
T ss_dssp TEEEEEE-GGGGSSEEEEEEETTTT---E---EEEEEEEE-------------SSE--EEEE-TTSSEEEEEEEEEEETT
T ss_pred cEEEEECCccccccceEEEEECCCC---c---EEEEeecc-------------cCC--ceeECCCCCEEEEEEEEEeccc
Confidence 46888885 2368888887742 2 22221 01 211 27788888 499998752
Q ss_pred -----CEEEEEcCCCcEEEeC--CccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC-CCCeEEEEEcCCC
Q 011333 164 -----MAIRKISDSGVTTIAG--GKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR-GNRAIREIQLHFD 231 (488)
Q Consensus 164 -----~rIrkid~ggVttIaG--g~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~-gN~rIrkI~~~g~ 231 (488)
..|..+|...+..... .+.. + ....+..++-+++.+++..+||.+. -...|-++|+...
T Consensus 62 rG~RtDvv~~~D~~TL~~~~EI~iP~k--------~-R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~ 128 (342)
T PF06433_consen 62 RGERTDVVEIWDTQTLSPTGEIEIPPK--------P-RAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK 128 (342)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEETTS----------B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT
T ss_pred cccceeEEEEEecCcCcccceEecCCc--------c-hheecccccceEEccCCcEEEEEccCCCCeEEEEECCCC
Confidence 2355666444432221 1100 0 0112456777887677778899884 3567777777653
No 83
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.92 E-value=4.3 Score=28.17 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=27.2
Q ss_pred CCCeEEEEECCCCeEEEEEcCCCce-EEeccCCCcceEEE
Q 011333 209 SSCSLLVIDRGNRAIREIQLHFDDC-AYQYGSSFPLGIAV 247 (488)
Q Consensus 209 ~~G~LYVaD~gN~rIrkI~~~g~~~-~~~~~~g~P~GIav 247 (488)
..+.|||++.+.+.|..|++..... ........|.+|++
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 4567999999999999999864333 22333346777765
No 84
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=83.36 E-value=13 Score=43.57 Aligned_cols=134 Identities=19% Similarity=0.203 Sum_probs=93.2
Q ss_pred ceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEEEEECC
Q 011333 85 PYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIADTM 162 (488)
Q Consensus 85 P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LYVAD~~ 162 (488)
...+.++. ++.+|-+|....+|.+....+... ..+.+. ....|.|+++|- .+++|.+|..
T Consensus 439 ~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~---~~~~~~---------------g~~~~~~lavD~~~~~~y~tDe~ 500 (877)
T KOG1215|consen 439 AVALDFDVLNNRIYWADLSDEKICRASQDGSSE---CELCGD---------------GLCIPEGLAVDWIGDNIYWTDEG 500 (877)
T ss_pred ceEEEEEecCCEEEEEeccCCeEeeeccCCCcc---ceEecc---------------CccccCcEEEEeccCCceecccC
Confidence 33444443 457888998888888888775321 112222 156789999997 5589999999
Q ss_pred CCEEEEEc-CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC-CCeEEEEEcCCCceEEe--c
Q 011333 163 NMAIRKIS-DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG-NRAIREIQLHFDDCAYQ--Y 237 (488)
Q Consensus 163 N~rIrkid-~ggV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~g-N~rIrkI~~~g~~~~~~--~ 237 (488)
+..|.+.+ ++.. .+++.. .+..|..+++.+..|.+|.+|++ ..+|-+-.++|...... .
T Consensus 501 ~~~i~v~~~~g~~~~vl~~~----------------~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~ 564 (877)
T KOG1215|consen 501 NCLIEVADLDGSSRKVLVSK----------------DLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVTN 564 (877)
T ss_pred CceeEEEEccCCceeEEEec----------------CCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEeC
Confidence 99999888 5542 344432 13578888866778999999998 55788888888655442 3
Q ss_pred cCCCcceEEEEecCC
Q 011333 238 GSSFPLGIAVLLAAG 252 (488)
Q Consensus 238 ~~g~P~GIav~~g~g 252 (488)
+...|.|++++....
T Consensus 565 ~~~~p~glt~d~~~~ 579 (877)
T KOG1215|consen 565 GILWPNGLTIDYETD 579 (877)
T ss_pred CccCCCcceEEeecc
Confidence 357899999986544
No 85
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.16 E-value=5.1 Score=27.76 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=17.4
Q ss_pred CcEEEEECCCCeEEEEeCCC
Q 011333 94 GELLILDSANSNLYRISSSL 113 (488)
Q Consensus 94 G~LYVaD~~n~rI~kid~~g 113 (488)
+.|||++...+.|..++..+
T Consensus 4 ~~lyv~~~~~~~v~~id~~~ 23 (42)
T TIGR02276 4 TKLYVTNSGSNTVSVIDTAT 23 (42)
T ss_pred CEEEEEeCCCCEEEEEECCC
Confidence 45999999999999999864
No 86
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=82.83 E-value=3.5 Score=42.95 Aligned_cols=57 Identities=21% Similarity=0.219 Sum_probs=41.6
Q ss_pred CCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEE
Q 011333 82 GIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD 160 (488)
Q Consensus 82 l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD 160 (488)
+.-|++... .+|.||++|.+.+.|.++|+++ |+...++-- + ..|+||++. |++.|.-
T Consensus 202 LsmPhSPRW-hdgrLwvldsgtGev~~vD~~~---G~~e~Va~v----p------------G~~rGL~f~--G~llvVg 258 (335)
T TIGR03032 202 LSMPHSPRW-YQGKLWLLNSGRGELGYVDPQA---GKFQPVAFL----P------------GFTRGLAFA--GDFAFVG 258 (335)
T ss_pred ccCCcCCcE-eCCeEEEEECCCCEEEEEcCCC---CcEEEEEEC----C------------CCCccccee--CCEEEEE
Confidence 345666666 3899999999999999999975 455555432 1 248999998 8766653
No 87
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=81.86 E-value=67 Score=33.16 Aligned_cols=57 Identities=12% Similarity=0.316 Sum_probs=32.3
Q ss_pred CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCCEEEEEc
Q 011333 93 GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKIS 170 (488)
Q Consensus 93 dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~rIrkid 170 (488)
++.||+.+. ++.|+.++..+ |++..-...... + -.+++++ ++.+||++. ++.+..+|
T Consensus 65 ~~~v~v~~~-~g~v~a~d~~t---G~~~W~~~~~~~-------------~--~~~p~v~-~~~v~v~~~-~g~l~ald 121 (377)
T TIGR03300 65 GGKVYAADA-DGTVVALDAET---GKRLWRVDLDER-------------L--SGGVGAD-GGLVFVGTE-KGEVIALD 121 (377)
T ss_pred CCEEEEECC-CCeEEEEEccC---CcEeeeecCCCC-------------c--ccceEEc-CCEEEEEcC-CCEEEEEE
Confidence 667888765 46788898654 222221111000 1 1124555 677888764 67888888
No 88
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=81.49 E-value=59 Score=33.53 Aligned_cols=112 Identities=9% Similarity=0.046 Sum_probs=77.9
Q ss_pred eEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCCE
Q 011333 86 YSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMA 165 (488)
Q Consensus 86 ~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~r 165 (488)
.++++.+||+..++-+..+.++.+|..++. ....+.|.. +.-.++++++|..-.|+-+....
T Consensus 67 ~dv~~s~dg~~alS~swD~~lrlWDl~~g~--~t~~f~GH~----------------~dVlsva~s~dn~qivSGSrDkT 128 (315)
T KOG0279|consen 67 SDVVLSSDGNFALSASWDGTLRLWDLATGE--STRRFVGHT----------------KDVLSVAFSTDNRQIVSGSRDKT 128 (315)
T ss_pred cceEEccCCceEEeccccceEEEEEecCCc--EEEEEEecC----------------CceEEEEecCCCceeecCCCcce
Confidence 577888999999998888899999988642 234455541 22457999999999998887888
Q ss_pred EEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC-CeEEEEEcCC
Q 011333 166 IRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN-RAIREIQLHF 230 (488)
Q Consensus 166 Irkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN-~rIrkI~~~g 230 (488)
|..++ -|. ..++..... =..-.+|.+++...+.+|+..+. ..|+..++.+
T Consensus 129 iklwnt~g~ck~t~~~~~~---------------~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~ 181 (315)
T KOG0279|consen 129 IKLWNTLGVCKYTIHEDSH---------------REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN 181 (315)
T ss_pred eeeeeecccEEEEEecCCC---------------cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC
Confidence 88888 344 566665421 12456788777765666666654 4566666654
No 89
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=81.46 E-value=2.8 Score=29.83 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=18.2
Q ss_pred CCCceEEEEccCCcEEEEECCC
Q 011333 82 GIEPYSVEVLPGGELLILDSAN 103 (488)
Q Consensus 82 l~~P~GIaVd~dG~LYVaD~~n 103 (488)
...+.+|++|++|++||+-..+
T Consensus 12 ~~~~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 12 QDYGNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred ceeEEEEEECCCCCEEEEEeec
Confidence 3479999999999999996544
No 90
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=80.67 E-value=11 Score=42.88 Aligned_cols=109 Identities=12% Similarity=0.172 Sum_probs=69.4
Q ss_pred EEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCCEE
Q 011333 87 SVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAI 166 (488)
Q Consensus 87 GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~rI 166 (488)
.+.+.|+.+...+-+..+.++.+|...+ ..++++.|. . ..-..|++.++|.-.++=...+.|
T Consensus 540 cv~FHPNs~Y~aTGSsD~tVRlWDv~~G--~~VRiF~GH----~------------~~V~al~~Sp~Gr~LaSg~ed~~I 601 (707)
T KOG0263|consen 540 CVSFHPNSNYVATGSSDRTVRLWDVSTG--NSVRIFTGH----K------------GPVTALAFSPCGRYLASGDEDGLI 601 (707)
T ss_pred eEEECCcccccccCCCCceEEEEEcCCC--cEEEEecCC----C------------CceEEEEEcCCCceEeecccCCcE
Confidence 3666777665555566677777776542 245555443 1 123468888888766655556777
Q ss_pred EEEc-C-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 011333 167 RKIS-D-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD 231 (488)
Q Consensus 167 rkid-~-gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~ 231 (488)
..+| . +. +..+.|-. ..-..|. +..+|+++|++.+++.|+.+|....
T Consensus 602 ~iWDl~~~~~v~~l~~Ht-----------------~ti~Sls-FS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 602 KIWDLANGSLVKQLKGHT-----------------GTIYSLS-FSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEEEcCCCcchhhhhccc-----------------CceeEEE-EecCCCEEEecCCCCeEEEEEchhh
Confidence 7777 2 23 44443321 1235667 5788999999999999999998753
No 91
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=79.93 E-value=25 Score=36.46 Aligned_cols=103 Identities=15% Similarity=0.147 Sum_probs=55.8
Q ss_pred CceEEEEcc-CCc-EEEEECCCCeEEEEeCCCCcccccEEEecCC--CCccccCCCcccccccCCcceEEEcCCCc-EEE
Q 011333 84 EPYSVEVLP-GGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSA--EGYSGHVDGKPREARMNHPKGLTVDDRGN-IYI 158 (488)
Q Consensus 84 ~P~GIaVd~-dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~--~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYV 158 (488)
..++++++| ++. +.|+-....-..+||..++ ......-.. .-+.|| -++++||+ ||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g---~~~~~~~a~~gRHFyGH---------------g~fs~dG~~Lyt 67 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTG---QLLQRLWAPPGRHFYGH---------------GVFSPDGRLLYT 67 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCC---ceeeEEcCCCCCEEecC---------------EEEcCCCCEEEE
Confidence 456777777 333 5556666666777777653 222222211 234444 46677886 666
Q ss_pred EE----CCCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECC
Q 011333 159 AD----TMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRG 219 (488)
Q Consensus 159 AD----~~N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaD~g 219 (488)
++ .+..+|-++| ..+...+..-.. .| ..|+.|. +.++| .|.|++-|
T Consensus 68 TEnd~~~g~G~IgVyd~~~~~~ri~E~~s---~G-----------IGPHel~-l~pDG~tLvVANGG 119 (305)
T PF07433_consen 68 TENDYETGRGVIGVYDAARGYRRIGEFPS---HG-----------IGPHELL-LMPDGETLVVANGG 119 (305)
T ss_pred eccccCCCcEEEEEEECcCCcEEEeEecC---CC-----------cChhhEE-EcCCCCEEEEEcCC
Confidence 64 3356788888 434433322110 00 2577887 45556 77777643
No 92
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=79.20 E-value=27 Score=34.86 Aligned_cols=113 Identities=17% Similarity=0.257 Sum_probs=59.0
Q ss_pred EEEEccCCcEEEEECCCCeEEEEeCCCCc-----ccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEEC
Q 011333 87 SVEVLPGGELLILDSANSNLYRISSSLSL-----YSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT 161 (488)
Q Consensus 87 GIaVd~dG~LYVaD~~n~rI~kid~~g~~-----~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~ 161 (488)
.|+++++|.||..+. ++.++|....... .+....+.+ .| -+...-|.++++|.||+.+.
T Consensus 85 ~i~~d~~G~LYaV~~-~G~lyR~~~~~~~~~~W~~~~~~~iG~-----~G----------W~~f~~vfa~~~GvLY~i~~ 148 (229)
T PF14517_consen 85 FIFFDPTGVLYAVTP-DGKLYRHPRPTNGSDNWIGGSGKKIGG-----TG----------WNDFDAVFAGPNGVLYAITP 148 (229)
T ss_dssp EEEE-TTS-EEEEET-T-EEEEES---STT--HHH-HSEEEE------SS----------GGGEEEEEE-TTS-EEEEET
T ss_pred EEEecCCccEEEecc-ccceeeccCCCccCcchhhccceeccc-----CC----------CccceEEEeCCCccEEEEcC
Confidence 789999999999886 5788887664211 001111111 12 34467799999999999996
Q ss_pred CCCEEEEEc--CCC------cE-EEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 011333 162 MNMAIRKIS--DSG------VT-TIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD 232 (488)
Q Consensus 162 ~N~rIrkid--~gg------Vt-tIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~ 232 (488)
.. ++.+.. .++ .+ ++.+.. +..+.-|. ..++|+||.+|+ ++.|++-......
T Consensus 149 dg-~~~~~~~p~~~~~~W~~~s~~v~~~g----------------w~~~~~i~-~~~~g~L~~V~~-~G~lyr~~~p~~~ 209 (229)
T PF14517_consen 149 DG-RLYRRYRPDGGSDRWLSGSGLVGGGG----------------WDSFHFIF-FSPDGNLWAVKS-NGKLYRGRPPQNG 209 (229)
T ss_dssp TE--EEEE---SSTT--HHHH-EEEESSS----------------GGGEEEEE-E-TTS-EEEE-E-TTEEEEES---ST
T ss_pred CC-ceEEeCCCCCCCCccccccceeccCC----------------cccceEEe-eCCCCcEEEEec-CCEEeccCCcccC
Confidence 44 666663 211 23 333322 22345566 788999999954 7888887666544
Q ss_pred eE
Q 011333 233 CA 234 (488)
Q Consensus 233 ~~ 234 (488)
|.
T Consensus 210 ~~ 211 (229)
T PF14517_consen 210 CP 211 (229)
T ss_dssp T-
T ss_pred Cc
Confidence 43
No 93
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=78.41 E-value=36 Score=36.48 Aligned_cols=118 Identities=18% Similarity=0.218 Sum_probs=76.5
Q ss_pred EEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCCEE
Q 011333 87 SVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAI 166 (488)
Q Consensus 87 GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~rI 166 (488)
.+.+.|+|...++-.+...++.+|.++.+ ....+ .|+ -+.-..|+..|||..+.+-..++.|
T Consensus 120 ~~~fsp~g~~l~tGsGD~TvR~WD~~TeT---p~~t~------KgH---------~~WVlcvawsPDgk~iASG~~dg~I 181 (480)
T KOG0271|consen 120 SVQFSPTGSRLVTGSGDTTVRLWDLDTET---PLFTC------KGH---------KNWVLCVAWSPDGKKIASGSKDGSI 181 (480)
T ss_pred EEEecCCCceEEecCCCceEEeeccCCCC---cceee------cCC---------ccEEEEEEECCCcchhhccccCCeE
Confidence 45678899999999999999999998632 22222 122 3455679999999999999999999
Q ss_pred EEEc--CCC--cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEE
Q 011333 167 RKIS--DSG--VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY 235 (488)
Q Consensus 167 rkid--~gg--VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~ 235 (488)
+..+ .|+ ..++.|-+... .+.-=.|..++ +.++++.+-+..+.|+..+.....|..
T Consensus 182 ~lwdpktg~~~g~~l~gH~K~I----------t~Lawep~hl~---p~~r~las~skDg~vrIWd~~~~~~~~ 241 (480)
T KOG0271|consen 182 RLWDPKTGQQIGRALRGHKKWI----------TALAWEPLHLV---PPCRRLASSSKDGSVRIWDTKLGTCVR 241 (480)
T ss_pred EEecCCCCCcccccccCcccce----------eEEeecccccC---CCccceecccCCCCEEEEEccCceEEE
Confidence 9999 444 24444422111 00001244443 445566666667777777777666654
No 94
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=78.36 E-value=33 Score=36.69 Aligned_cols=76 Identities=17% Similarity=0.284 Sum_probs=48.1
Q ss_pred CCCceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEec-CCCCccccCCCcccccccCCcceEEEc--C--CCc
Q 011333 82 GIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAG-SAEGYSGHVDGKPREARMNHPKGLTVD--D--RGN 155 (488)
Q Consensus 82 l~~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG-~~~G~~G~~dG~a~~a~Ln~P~GIAvD--~--dG~ 155 (488)
..++.|+++|. .|.|||++-. .-||+++.+-..-.....++- ...+. .....||++- . +|-
T Consensus 207 ~sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~~g~~l------------~aDvEGlaly~~~~g~gY 273 (381)
T PF02333_consen 207 GSQPEGCVVDDETGRLYVGEED-VGIWRYDAEPEGGNDRTLVASADGDGL------------VADVEGLALYYGSDGKGY 273 (381)
T ss_dssp SS-EEEEEEETTTTEEEEEETT-TEEEEEESSCCC-S--EEEEEBSSSSB-------------S-EEEEEEEE-CCC-EE
T ss_pred CCcceEEEEecccCCEEEecCc-cEEEEEecCCCCCCcceeeeccccccc------------ccCccceEEEecCCCCeE
Confidence 45899999987 6889999964 689999886221011122211 10011 2346688873 2 456
Q ss_pred EEEEECCCCEEEEEc
Q 011333 156 IYIADTMNMAIRKIS 170 (488)
Q Consensus 156 LYVAD~~N~rIrkid 170 (488)
|+|++.+++....|+
T Consensus 274 LivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 274 LIVSSQGDNSFAVYD 288 (381)
T ss_dssp EEEEEGGGTEEEEEE
T ss_pred EEEEcCCCCeEEEEe
Confidence 999999999999998
No 95
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=78.32 E-value=1.1e+02 Score=33.42 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=68.0
Q ss_pred CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333 84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 163 (488)
Q Consensus 84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N 163 (488)
.=+..++.|||.||.+-..++.|..++.... ..++ .++|+ .|+ -..|+|..+|-..++....
T Consensus 349 ~~ts~~fHpDgLifgtgt~d~~vkiwdlks~-----~~~a----~Fpgh-t~~--------vk~i~FsENGY~Lat~add 410 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ-----TNVA----KFPGH-TGP--------VKAISFSENGYWLATAADD 410 (506)
T ss_pred eeEEeeEcCCceEEeccCCCceEEEEEcCCc-----cccc----cCCCC-CCc--------eeEEEeccCceEEEEEecC
Confidence 4567788999999999999999999988742 1121 12232 111 3569999999766666656
Q ss_pred CEEEEEcCC---CcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333 164 MAIRKISDS---GVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH 229 (488)
Q Consensus 164 ~rIrkid~g---gVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~ 229 (488)
..|+.+|-. .+.++.-. .+..-..+. +|..|..+++-...-+|+.+...
T Consensus 411 ~~V~lwDLRKl~n~kt~~l~----------------~~~~v~s~~-fD~SGt~L~~~g~~l~Vy~~~k~ 462 (506)
T KOG0289|consen 411 GSVKLWDLRKLKNFKTIQLD----------------EKKEVNSLS-FDQSGTYLGIAGSDLQVYICKKK 462 (506)
T ss_pred CeEEEEEehhhcccceeecc----------------ccccceeEE-EcCCCCeEEeecceeEEEEEecc
Confidence 668888822 24454421 011235666 57777666665444455555533
No 96
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=77.96 E-value=92 Score=32.39 Aligned_cols=144 Identities=19% Similarity=0.135 Sum_probs=83.7
Q ss_pred CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333 84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 163 (488)
Q Consensus 84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N 163 (488)
.+..|.++.+|++.++-..+..|+.++...++ .+.++.-.. .|- ..++|-++.-.+ |+-+-..+
T Consensus 16 ~i~sl~fs~~G~~litss~dDsl~LYd~~~g~--~~~ti~skk---yG~-----~~~~Fth~~~~~------i~sStk~d 79 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSEDDSLRLYDSLSGK--QVKTINSKK---YGV-----DLACFTHHSNTV------IHSSTKED 79 (311)
T ss_pred ceeEEEecCCCCEEEEecCCCeEEEEEcCCCc--eeeEeeccc---ccc-----cEEEEecCCceE------EEccCCCC
Confidence 56788999999988887777899999987532 333443221 111 122333222222 22222335
Q ss_pred CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEEeccCC
Q 011333 164 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSS 240 (488)
Q Consensus 164 ~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~~~~~g 240 (488)
..||-++ ++. +..+.|-.. .-++|. +.+-+..+++-+....||-+|+....|.......
T Consensus 80 ~tIryLsl~dNkylRYF~GH~~-----------------~V~sL~-~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~ 141 (311)
T KOG1446|consen 80 DTIRYLSLHDNKYLRYFPGHKK-----------------RVNSLS-VSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS 141 (311)
T ss_pred CceEEEEeecCceEEEcCCCCc-----------------eEEEEE-ecCCCCeEEecccCCeEEeeEecCCCCceEEecC
Confidence 6666666 444 555444211 234566 5566688888887889999999877776554444
Q ss_pred CcceEEEEecCCceEEEEEEEEecc
Q 011333 241 FPLGIAVLLAAGFFGYMLALLQRRV 265 (488)
Q Consensus 241 ~P~GIav~~g~g~~Gy~~a~l~~~~ 265 (488)
.+--+|.|. -|-++|......
T Consensus 142 ~~pi~AfDp----~GLifA~~~~~~ 162 (311)
T KOG1446|consen 142 GRPIAAFDP----EGLIFALANGSE 162 (311)
T ss_pred CCcceeECC----CCcEEEEecCCC
Confidence 444455663 355666655554
No 97
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=75.83 E-value=90 Score=31.18 Aligned_cols=71 Identities=10% Similarity=-0.029 Sum_probs=43.1
Q ss_pred CCcEEEEECCCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEE
Q 011333 153 RGNIYIADTMNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQ 227 (488)
Q Consensus 153 dG~LYVAD~~N~rIrkid--~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~ 227 (488)
+|.||.-=....+|.+|+ .|+|........-. ..-.......+-++|||+.+..+++|++-..=-.+..+.
T Consensus 185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~----~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEVk 257 (262)
T COG3823 185 DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLL----KELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLFEVK 257 (262)
T ss_pred ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCc----hhcCccccccccccceeecCcCCeEEEecCcCceeEEEE
Confidence 477777666778999999 56665544321100 000112223567899998888889999865434444443
No 98
>PRK04792 tolB translocation protein TolB; Provisional
Probab=75.21 E-value=1.3e+02 Score=32.57 Aligned_cols=32 Identities=9% Similarity=0.249 Sum_probs=18.1
Q ss_pred ceEEEcCCCc-E-EEEEC-CCCEEEEEc-C-CCcEEE
Q 011333 146 KGLTVDDRGN-I-YIADT-MNMAIRKIS-D-SGVTTI 177 (488)
Q Consensus 146 ~GIAvD~dG~-L-YVAD~-~N~rIrkid-~-ggVttI 177 (488)
...++++||. | |.+|. ++..|..++ + +.+..+
T Consensus 309 ~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L 345 (448)
T PRK04792 309 TEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL 345 (448)
T ss_pred cceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE
Confidence 3456778885 4 34443 345788877 3 334444
No 99
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=74.96 E-value=54 Score=35.43 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=74.7
Q ss_pred CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333 84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 163 (488)
Q Consensus 84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N 163 (488)
.-.+|++.+||.|..+-....-=+++|..++ ..+.+++|. ...-.+|+++|+|-...+-...
T Consensus 305 ~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg--r~im~L~gH----------------~k~I~~V~fsPNGy~lATgs~D 366 (459)
T KOG0272|consen 305 GVFSIAFQPDGSLAATGGLDSLGRVWDLRTG--RCIMFLAGH----------------IKEILSVAFSPNGYHLATGSSD 366 (459)
T ss_pred ccceeEecCCCceeeccCccchhheeecccC--cEEEEeccc----------------ccceeeEeECCCceEEeecCCC
Confidence 4468899999999887543333333454432 345566554 4456689999999888887777
Q ss_pred CEEEEEc-C--CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333 164 MAIRKIS-D--SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF 230 (488)
Q Consensus 164 ~rIrkid-~--ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g 230 (488)
+.+++.| . ..+.+|.+-. +--..|.|.+..|..+++-...+.++.++..+
T Consensus 367 nt~kVWDLR~r~~ly~ipAH~-----------------nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~ 419 (459)
T KOG0272|consen 367 NTCKVWDLRMRSELYTIPAHS-----------------NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT 419 (459)
T ss_pred CcEEEeeecccccceeccccc-----------------chhhheEecccCCeEEEEcccCcceeeecCCC
Confidence 7777777 2 2267776532 23356776656788888888788888877654
No 100
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=74.80 E-value=29 Score=39.91 Aligned_cols=111 Identities=21% Similarity=0.292 Sum_probs=68.2
Q ss_pred ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEEC-CC
Q 011333 85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT-MN 163 (488)
Q Consensus 85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~-~N 163 (488)
-++++|||+-.+.++-.....|+.|+...++ ...++-|+ .++ +|. +--+..||.| ||+|-. .+
T Consensus 599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sgK--q~k~FKgs----~~~-eG~--------lIKv~lDPSg-iY~atScsd 662 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESGK--QVKSFKGS----RDH-EGD--------LIKVILDPSG-IYLATSCSD 662 (1080)
T ss_pred EEEeeeCCCcceEEEEecccceEEEeccccc--eeeeeccc----ccC-CCc--------eEEEEECCCc-cEEEEeecC
Confidence 3688999977766666666678888876432 34555444 222 333 4557889888 555544 45
Q ss_pred CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333 164 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH 229 (488)
Q Consensus 164 ~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~ 229 (488)
..+-.+| .|. +.+..|-.+ --.||- +.+++.=+|+-++.++|.++.+.
T Consensus 663 ktl~~~Df~sgEcvA~m~GHsE-----------------~VTG~k-F~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 663 KTLCFVDFVSGECVAQMTGHSE-----------------AVTGVK-FLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred CceEEEEeccchhhhhhcCcch-----------------heeeee-ecccchhheeecCCceEEEEECc
Confidence 5566666 555 555544322 125665 45667767777777888777654
No 101
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=74.14 E-value=23 Score=37.51 Aligned_cols=125 Identities=18% Similarity=0.208 Sum_probs=76.0
Q ss_pred EEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCC---------Cc--cccCCCcccccccCCcceEE-------
Q 011333 88 VEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAE---------GY--SGHVDGKPREARMNHPKGLT------- 149 (488)
Q Consensus 88 IaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~---------G~--~G~~dG~a~~a~Ln~P~GIA------- 149 (488)
+.++-+..+.|+-+....|+++|-+++. .+.++++.-. |+ .-..|-......|..|..|+
T Consensus 241 LCLqyd~rviisGSSDsTvrvWDv~tge--~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvG 318 (499)
T KOG0281|consen 241 LCLQYDERVIVSGSSDSTVRVWDVNTGE--PLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVG 318 (499)
T ss_pred EeeeccceEEEecCCCceEEEEeccCCc--hhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhh
Confidence 3455577788888888888888887642 2333333211 10 00012223333455565543
Q ss_pred -------EcCCCcEEEEECCCCEEEEEcC--CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC
Q 011333 150 -------VDDRGNIYIADTMNMAIRKISD--SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG 219 (488)
Q Consensus 150 -------vD~dG~LYVAD~~N~rIrkid~--gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~g 219 (488)
||-+..++|+-++...|+..+. +. |.++.|-. .|||..--.|.|.|+.+.
T Consensus 319 HrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHk--------------------RGIAClQYr~rlvVSGSS 378 (499)
T KOG0281|consen 319 HRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHK--------------------RGIACLQYRDRLVVSGSS 378 (499)
T ss_pred hhhheeeeccccceEEEecCCceEEEEeccceeeehhhhccc--------------------ccceehhccCeEEEecCC
Confidence 4445567777777778888772 33 66666543 345555567899999999
Q ss_pred CCeEEEEEcCCCceE
Q 011333 220 NRAIREIQLHFDDCA 234 (488)
Q Consensus 220 N~rIrkI~~~g~~~~ 234 (488)
.+.||-++.+...|.
T Consensus 379 DntIRlwdi~~G~cL 393 (499)
T KOG0281|consen 379 DNTIRLWDIECGACL 393 (499)
T ss_pred CceEEEEeccccHHH
Confidence 999999998765553
No 102
>PRK05137 tolB translocation protein TolB; Provisional
Probab=72.85 E-value=1.4e+02 Score=31.90 Aligned_cols=73 Identities=14% Similarity=0.269 Sum_probs=38.6
Q ss_pred EEEEccCCc-EEEE-E-CCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-E-EEEEC
Q 011333 87 SVEVLPGGE-LLIL-D-SANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-I-YIADT 161 (488)
Q Consensus 87 GIaVd~dG~-LYVa-D-~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-L-YVAD~ 161 (488)
..+++|||. |+++ + .++..|+.++..+ +.+..+.... + .....++++||. | |.+|.
T Consensus 250 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~---~~~~~Lt~~~----~------------~~~~~~~spDG~~i~f~s~~ 310 (435)
T PRK05137 250 APRFSPDGRKVVMSLSQGGNTDIYTMDLRS---GTTTRLTDSP----A------------IDTSPSYSPDGSQIVFESDR 310 (435)
T ss_pred CcEECCCCCEEEEEEecCCCceEEEEECCC---CceEEccCCC----C------------ccCceeEcCCCCEEEEEECC
Confidence 446778886 4443 3 2345788888775 2333332210 0 122356777885 3 44443
Q ss_pred -CCCEEEEEc-CCC-cEEEe
Q 011333 162 -MNMAIRKIS-DSG-VTTIA 178 (488)
Q Consensus 162 -~N~rIrkid-~gg-VttIa 178 (488)
+...|..++ +++ +..+.
T Consensus 311 ~g~~~Iy~~d~~g~~~~~lt 330 (435)
T PRK05137 311 SGSPQLYVMNADGSNPRRIS 330 (435)
T ss_pred CCCCeEEEEECCCCCeEEee
Confidence 235788887 443 54443
No 103
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=72.55 E-value=86 Score=29.49 Aligned_cols=65 Identities=18% Similarity=0.375 Sum_probs=37.8
Q ss_pred EEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCCEEEE
Q 011333 89 EVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRK 168 (488)
Q Consensus 89 aVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~rIrk 168 (488)
++..+|.||+++ ..+.|+.++..+ |++..-.-.. + .+..+ ..+ .++.|||+...+ +|+.
T Consensus 32 ~~~~~~~v~~~~-~~~~l~~~d~~t---G~~~W~~~~~-~------------~~~~~--~~~-~~~~v~v~~~~~-~l~~ 90 (238)
T PF13360_consen 32 AVPDGGRVYVAS-GDGNLYALDAKT---GKVLWRFDLP-G------------PISGA--PVV-DGGRVYVGTSDG-SLYA 90 (238)
T ss_dssp EEEETTEEEEEE-TTSEEEEEETTT---SEEEEEEECS-S------------CGGSG--EEE-ETTEEEEEETTS-EEEE
T ss_pred EEEeCCEEEEEc-CCCEEEEEECCC---CCEEEEeecc-c------------cccce--eee-ccccccccccee-eeEe
Confidence 454578899985 567999999754 2322211110 0 01112 233 367899988544 9999
Q ss_pred Ec--CCCc
Q 011333 169 IS--DSGV 174 (488)
Q Consensus 169 id--~ggV 174 (488)
++ +|.+
T Consensus 91 ~d~~tG~~ 98 (238)
T PF13360_consen 91 LDAKTGKV 98 (238)
T ss_dssp EETTTSCE
T ss_pred cccCCcce
Confidence 99 4443
No 104
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=72.53 E-value=8.9 Score=37.98 Aligned_cols=63 Identities=17% Similarity=0.146 Sum_probs=39.1
Q ss_pred CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCC-cEEEEEC
Q 011333 93 GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NIYIADT 161 (488)
Q Consensus 93 dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG-~LYVAD~ 161 (488)
+|+||.--....+|.||+++. |++...+.-. +..-. -.......+-++|||.++++ ++|++-.
T Consensus 185 dG~lyANVw~t~~I~rI~p~s---GrV~~widlS-~L~~~--~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 185 DGELYANVWQTTRIARIDPDS---GRVVAWIDLS-GLLKE--LNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred ccEEEEeeeeecceEEEcCCC---CcEEEEEEcc-CCchh--cCccccccccccceeecCcCCeEEEecC
Confidence 566666656668999999997 4555444321 11000 00122336789999999977 6888753
No 105
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=71.17 E-value=1.3e+02 Score=31.13 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=17.8
Q ss_pred EEEEccCCc-EEEEEC--CCCeEEEEeCCC
Q 011333 87 SVEVLPGGE-LLILDS--ANSNLYRISSSL 113 (488)
Q Consensus 87 GIaVd~dG~-LYVaD~--~n~rI~kid~~g 113 (488)
.+++++||. |+++.. ++..|+.++..+
T Consensus 238 ~~~~spDg~~l~~~~~~~~~~~i~~~d~~~ 267 (417)
T TIGR02800 238 APAFSPDGSKLAVSLSKDGNPDIYVMDLDG 267 (417)
T ss_pred ceEECCCCCEEEEEECCCCCccEEEEECCC
Confidence 467788886 655432 345788888775
No 106
>PRK04922 tolB translocation protein TolB; Provisional
Probab=70.97 E-value=1.5e+02 Score=31.60 Aligned_cols=65 Identities=15% Similarity=0.258 Sum_probs=35.4
Q ss_pred EEEEccCCc-EEEE-E-CCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-E-EEEEC
Q 011333 87 SVEVLPGGE-LLIL-D-SANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-I-YIADT 161 (488)
Q Consensus 87 GIaVd~dG~-LYVa-D-~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-L-YVAD~ 161 (488)
.+++++||. |+++ + .++..|+.++..+ +.+..+... .......++++||. | |.+|.
T Consensus 252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~---g~~~~lt~~----------------~~~~~~~~~spDG~~l~f~sd~ 312 (433)
T PRK04922 252 APSFSPDGRRLALTLSRDGNPEIYVMDLGS---RQLTRLTNH----------------FGIDTEPTWAPDGKSIYFTSDR 312 (433)
T ss_pred CceECCCCCEEEEEEeCCCCceEEEEECCC---CCeEECccC----------------CCCccceEECCCCCEEEEEECC
Confidence 456777886 4443 3 3345788888765 233333221 00123467888886 4 44554
Q ss_pred C-CCEEEEEc
Q 011333 162 M-NMAIRKIS 170 (488)
Q Consensus 162 ~-N~rIrkid 170 (488)
. +..|..++
T Consensus 313 ~g~~~iy~~d 322 (433)
T PRK04922 313 GGRPQIYRVA 322 (433)
T ss_pred CCCceEEEEE
Confidence 3 34688877
No 107
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=70.95 E-value=1.2e+02 Score=33.56 Aligned_cols=25 Identities=12% Similarity=0.363 Sum_probs=15.2
Q ss_pred EEEccCCcEEEEECCCCeEEEEeCC
Q 011333 88 VEVLPGGELLILDSANSNLYRISSS 112 (488)
Q Consensus 88 IaVd~dG~LYVaD~~n~rI~kid~~ 112 (488)
|.+...|+||+-|..+.+|-+++-+
T Consensus 281 IvFq~~GdIylydP~td~lekldI~ 305 (668)
T COG4946 281 IVFQNAGDIYLYDPETDSLEKLDIG 305 (668)
T ss_pred EEEecCCcEEEeCCCcCcceeeecC
Confidence 4445556666666666666666543
No 108
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=70.35 E-value=78 Score=34.47 Aligned_cols=111 Identities=15% Similarity=0.130 Sum_probs=67.5
Q ss_pred eEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCCE
Q 011333 86 YSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMA 165 (488)
Q Consensus 86 ~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~r 165 (488)
.++...+.|+.+++-...+.+..-+... |...+++-.- + .+ -.-+..++.|||.||.+=+.+..
T Consensus 307 ~~ls~h~tgeYllsAs~d~~w~Fsd~~~---g~~lt~vs~~-~-s~-----------v~~ts~~fHpDgLifgtgt~d~~ 370 (506)
T KOG0289|consen 307 TGLSLHPTGEYLLSASNDGTWAFSDISS---GSQLTVVSDE-T-SD-----------VEYTSAAFHPDGLIFGTGTPDGV 370 (506)
T ss_pred eeeeeccCCcEEEEecCCceEEEEEccC---CcEEEEEeec-c-cc-----------ceeEEeeEcCCceEEeccCCCce
Confidence 5677778888666655544544444432 2233333210 0 00 01245789999999999999999
Q ss_pred EEEEc-CCC--cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333 166 IRKIS-DSG--VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF 230 (488)
Q Consensus 166 Irkid-~gg--VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g 230 (488)
|+.++ ..+ +.-+-| -.+ --..|+ +..+|.-+++.+....|+.+|+..
T Consensus 371 vkiwdlks~~~~a~Fpg-ht~----------------~vk~i~-FsENGY~Lat~add~~V~lwDLRK 420 (506)
T KOG0289|consen 371 VKIWDLKSQTNVAKFPG-HTG----------------PVKAIS-FSENGYWLATAADDGSVKLWDLRK 420 (506)
T ss_pred EEEEEcCCccccccCCC-CCC----------------ceeEEE-eccCceEEEEEecCCeEEEEEehh
Confidence 99988 222 333322 111 124567 567888888888888899998875
No 109
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=69.76 E-value=77 Score=33.23 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=16.6
Q ss_pred ceEEEcCCCcEEEEECCCCEEEEEc
Q 011333 146 KGLTVDDRGNIYIADTMNMAIRKIS 170 (488)
Q Consensus 146 ~GIAvD~dG~LYVAD~~N~rIrkid 170 (488)
..++++ +|.||+++. +++|..++
T Consensus 288 ~~~~~~-~~~vy~~~~-~g~l~ald 310 (394)
T PRK11138 288 NDFAVD-GGRIYLVDQ-NDRVYALD 310 (394)
T ss_pred cCcEEE-CCEEEEEcC-CCeEEEEE
Confidence 344554 678999874 67888888
No 110
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=69.32 E-value=1.5e+02 Score=30.97 Aligned_cols=146 Identities=15% Similarity=0.147 Sum_probs=89.5
Q ss_pred EEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCCEEE
Q 011333 88 VEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIR 167 (488)
Q Consensus 88 IaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~rIr 167 (488)
.++.++-.+|+.+. .+.|+++|.+++ ....+|+. ++ .-.+|.....-+..|+-.+..+|.
T Consensus 60 c~F~d~~~~~~G~~-dg~vr~~Dln~~----~~~~igth-------~~--------~i~ci~~~~~~~~vIsgsWD~~ik 119 (323)
T KOG1036|consen 60 CAFADESTIVTGGL-DGQVRRYDLNTG----NEDQIGTH-------DE--------GIRCIEYSYEVGCVISGSWDKTIK 119 (323)
T ss_pred eeccCCceEEEecc-CceEEEEEecCC----cceeeccC-------CC--------ceEEEEeeccCCeEEEcccCccEE
Confidence 34444556666654 479999999863 34555542 11 124566666567888888889999
Q ss_pred EEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEEe-ccCC---Ccc
Q 011333 168 KISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ-YGSS---FPL 243 (488)
Q Consensus 168 kid~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~~-~~~g---~P~ 243 (488)
.+|... ....+. +..+.-|-.++..|+.+|.-+.+.+|..+++.......+ ..++ ...
T Consensus 120 ~wD~R~-~~~~~~-----------------~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR 181 (323)
T KOG1036|consen 120 FWDPRN-KVVVGT-----------------FDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTR 181 (323)
T ss_pred EEeccc-cccccc-----------------cccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEE
Confidence 998543 111111 233344444667777777777889999999876433322 1121 123
Q ss_pred eEEEEecCCceEEEEEEEEeccceEEeccC
Q 011333 244 GIAVLLAAGFFGYMLALLQRRVGTIVSSQN 273 (488)
Q Consensus 244 GIav~~g~g~~Gy~~a~l~~~~g~~~~s~~ 273 (488)
.|+... ..-||+....-+|+-.=+..+.
T Consensus 182 ~v~~~p--n~eGy~~sSieGRVavE~~d~s 209 (323)
T KOG1036|consen 182 CVALVP--NGEGYVVSSIEGRVAVEYFDDS 209 (323)
T ss_pred EEEEec--CCCceEEEeecceEEEEccCCc
Confidence 466665 4678999999888765555544
No 111
>smart00284 OLF Olfactomedin-like domains.
Probab=69.20 E-value=55 Score=33.15 Aligned_cols=77 Identities=25% Similarity=0.413 Sum_probs=44.9
Q ss_pred eEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccC------CcceEEEcCCCc--EE
Q 011333 86 YSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMN------HPKGLTVDDRGN--IY 157 (488)
Q Consensus 86 ~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln------~P~GIAvD~dG~--LY 157 (488)
+|..| -+|.||..-..+..|.|++..+..+.....+-+. ++. .++. .=-++|+|.+|- ||
T Consensus 77 tG~VV-YngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a--~y~---------~~~~Y~~~~~sdiDlAvDE~GLWvIY 144 (255)
T smart00284 77 TGVVV-YNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGA--GYN---------NRFPYAWGGFSDIDLAVDENGLWVIY 144 (255)
T ss_pred ccEEE-ECceEEEEecCCccEEEEECCCCcEEEEEecCcc--ccc---------cccccccCCCccEEEEEcCCceEEEE
Confidence 34455 4799999888889999999986432111112111 110 0111 113799999993 66
Q ss_pred EEECCCC--EEEEEcCCCc
Q 011333 158 IADTMNM--AIRKISDSGV 174 (488)
Q Consensus 158 VAD~~N~--rIrkid~ggV 174 (488)
-+...++ .|-|+++..+
T Consensus 145 at~~~~g~ivvSkLnp~tL 163 (255)
T smart00284 145 ATEQNAGKIVISKLNPATL 163 (255)
T ss_pred eccCCCCCEEEEeeCcccc
Confidence 6655444 3458886653
No 112
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=69.00 E-value=49 Score=34.04 Aligned_cols=87 Identities=18% Similarity=0.249 Sum_probs=55.6
Q ss_pred cCCcceEEEcCCCcEEEEECCCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEE---CCCCeEEEE
Q 011333 142 MNHPKGLTVDDRGNIYIADTMNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYI---GSSCSLLVI 216 (488)
Q Consensus 142 Ln~P~GIAvD~dG~LYVAD~~N~rIrkid--~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~v---d~~G~LYVa 216 (488)
.-+.++|..+.+|+++|+=+..+.|.+|+ +|.|.=..+|+.+ ..+.. .+..|..-++..+. +.++.|-|.
T Consensus 143 ~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~--~df~~---~~~~f~~QHdar~~~~~~~~~~IslF 217 (299)
T PF14269_consen 143 YFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRN--SDFTL---PATNFSWQHDARFLNESNDDGTISLF 217 (299)
T ss_pred ccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCC--Ccccc---cCCcEeeccCCEEeccCCCCCEEEEE
Confidence 56788999999999999999999999999 4556544555422 11111 33446566666644 255666666
Q ss_pred EC----------CCCeEEEEEcCCCce
Q 011333 217 DR----------GNRAIREIQLHFDDC 233 (488)
Q Consensus 217 D~----------gN~rIrkI~~~g~~~ 233 (488)
|- ..++|..++......
T Consensus 218 DN~~~~~~~~~~s~~~v~~ld~~~~~~ 244 (299)
T PF14269_consen 218 DNANSDFNGTEPSRGLVLELDPETMTV 244 (299)
T ss_pred cCCCCCCCCCcCCCceEEEEECCCCEE
Confidence 64 235566666654433
No 113
>PTZ00420 coronin; Provisional
Probab=68.05 E-value=2e+02 Score=32.46 Aligned_cols=121 Identities=10% Similarity=-0.001 Sum_probs=68.7
Q ss_pred CceEEEEccC-CcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEEC
Q 011333 84 EPYSVEVLPG-GELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT 161 (488)
Q Consensus 84 ~P~GIaVd~d-G~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~ 161 (488)
.-..++++++ ++++++-...+.|+.++..... ..+..+.....-..|+ -..-..|++.+++. ++++=.
T Consensus 76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~-~~~~~i~~p~~~L~gH---------~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGSEDLTIRVWEIPHND-ESVKEIKDPQCILKGH---------KKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCC-ccccccccceEEeecC---------CCcEEEEEECCCCCeEEEEEe
Confidence 3467888885 6788877778889888865310 0000000000000111 12346788998886 444444
Q ss_pred CCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 011333 162 MNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC 233 (488)
Q Consensus 162 ~N~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~ 233 (488)
..+.|+.+| .+. +..+... ....+++ .+.+|.++++-...+.|+.+++....+
T Consensus 146 ~DgtIrIWDl~tg~~~~~i~~~------------------~~V~Sls-wspdG~lLat~s~D~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 146 FDSFVNIWDIENEKRAFQINMP------------------KKLSSLK-WNIKGNLLSGTCVGKHMHIIDPRKQEI 201 (568)
T ss_pred CCCeEEEEECCCCcEEEEEecC------------------CcEEEEE-ECCCCCEEEEEecCCEEEEEECCCCcE
Confidence 567888888 333 2222110 0235677 577788888776677888888875433
No 114
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=67.27 E-value=46 Score=36.91 Aligned_cols=125 Identities=15% Similarity=0.208 Sum_probs=72.3
Q ss_pred CCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECC
Q 011333 83 IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM 162 (488)
Q Consensus 83 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~ 162 (488)
..|+.-++++||.++.+-..++.|+.++..+ ..-++...++.. |..| ..-+.|+|..+|++..+-..
T Consensus 318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~-~~v~p~~~vk~A-----H~~g-------~~Itsi~FS~dg~~LlSRg~ 384 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGS-RTVRPVMKVKDA-----HLPG-------QDITSISFSYDGNYLLSRGF 384 (641)
T ss_pred cCceeeecCCCcchhhhcccCCceeeeecCC-cccccceEeeec-----cCCC-------CceeEEEeccccchhhhccC
Confidence 3567777888888877777788888888632 212333333321 1011 13568999999999998887
Q ss_pred CCEEEEEc--C-CC-cEEEeCCccCCCCCCCCCCcccccC-----------CCCCeeEEECCCCeEEEEECCC-CeEEEE
Q 011333 163 NMAIRKIS--D-SG-VTTIAGGKWGRGGGHVDGPSEDAKF-----------SNDFDVVYIGSSCSLLVIDRGN-RAIREI 226 (488)
Q Consensus 163 N~rIrkid--~-gg-VttIaGg~~g~~~g~~dG~~~~a~f-----------~~P~gIa~vd~~G~LYVaD~gN-~rIrkI 226 (488)
...++..| . .. +.+..|....+ +.++..| +.|++.+ .|.|||-|+-. ..|++|
T Consensus 385 D~tLKvWDLrq~kkpL~~~tgL~t~~-------~~tdc~FSPd~kli~TGtS~~~~~~----~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 385 DDTLKVWDLRQFKKPLNVRTGLPTPF-------PGTDCCFSPDDKLILTGTSAPNGMT----AGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred CCceeeeeccccccchhhhcCCCccC-------CCCccccCCCceEEEecccccCCCC----CceEEEEeccceeeEEEe
Confidence 77777777 2 12 33333332221 0111222 2233332 45788888754 678888
Q ss_pred EcCCC
Q 011333 227 QLHFD 231 (488)
Q Consensus 227 ~~~g~ 231 (488)
+..+-
T Consensus 454 ~i~~a 458 (641)
T KOG0772|consen 454 DISTA 458 (641)
T ss_pred cCCCc
Confidence 77643
No 115
>PLN00181 protein SPA1-RELATED; Provisional
Probab=67.07 E-value=1.6e+02 Score=34.05 Aligned_cols=121 Identities=12% Similarity=0.133 Sum_probs=66.8
Q ss_pred ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEEEEECCC
Q 011333 85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIADTMN 163 (488)
Q Consensus 85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LYVAD~~N 163 (488)
-..++++++|+++++-..++.|..++..... . .+....... .....-....++++.+ .+.+.++=...
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~----~--~~~~~~~~~-----~~~~~~~~v~~l~~~~~~~~~las~~~D 554 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESII----K--DGRDIHYPV-----VELASRSKLSGICWNSYIKSQVASSNFE 554 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCccc----c--cccccccce-----EEecccCceeeEEeccCCCCEEEEEeCC
Confidence 3568899999988887778899988864210 0 000000000 0000011234677765 35555555557
Q ss_pred CEEEEEc-C-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 011333 164 MAIRKIS-D-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC 233 (488)
Q Consensus 164 ~rIrkid-~-gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~ 233 (488)
+.|+.++ . +. +.++.+-. ..-++|++.+.++.++++-...+.|+.++.....+
T Consensus 555 g~v~lWd~~~~~~~~~~~~H~-----------------~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~ 610 (793)
T PLN00181 555 GVVQVWDVARSQLVTEMKEHE-----------------KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS 610 (793)
T ss_pred CeEEEEECCCCeEEEEecCCC-----------------CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE
Confidence 8888888 3 33 33332211 12356774445677777777778888888765433
No 116
>PRK01742 tolB translocation protein TolB; Provisional
Probab=67.02 E-value=1.8e+02 Score=30.99 Aligned_cols=74 Identities=20% Similarity=0.227 Sum_probs=37.4
Q ss_pred eEEEEccCCc-E-EEEE-CCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEE-E
Q 011333 86 YSVEVLPGGE-L-LILD-SANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA-D 160 (488)
Q Consensus 86 ~GIaVd~dG~-L-YVaD-~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVA-D 160 (488)
..++++|||+ | |+++ .....|+.++..+ +....+... .|+ -..+++.+||+ |+++ +
T Consensus 207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~t---g~~~~l~~~----~g~------------~~~~~wSPDG~~La~~~~ 267 (429)
T PRK01742 207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRS---GARKVVASF----RGH------------NGAPAFSPDGSRLAFASS 267 (429)
T ss_pred ccceEcCCCCEEEEEEecCCCcEEEEEeCCC---CceEEEecC----CCc------------cCceeECCCCCEEEEEEe
Confidence 3456777776 3 3333 2335688887765 232333211 111 11368888886 5443 3
Q ss_pred -CCCCEEEEEc-CCC-cEEEe
Q 011333 161 -TMNMAIRKIS-DSG-VTTIA 178 (488)
Q Consensus 161 -~~N~rIrkid-~gg-VttIa 178 (488)
.++..|..++ +++ +..+.
T Consensus 268 ~~g~~~Iy~~d~~~~~~~~lt 288 (429)
T PRK01742 268 KDGVLNIYVMGANGGTPSQLT 288 (429)
T ss_pred cCCcEEEEEEECCCCCeEeec
Confidence 2344677777 333 44443
No 117
>PTZ00421 coronin; Provisional
Probab=65.19 E-value=2.2e+02 Score=31.40 Aligned_cols=68 Identities=10% Similarity=0.081 Sum_probs=46.9
Q ss_pred ceEEEEccCC-cEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333 85 PYSVEVLPGG-ELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 163 (488)
Q Consensus 85 P~GIaVd~dG-~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N 163 (488)
-..|++.+++ +++++-...+.|+.+|...+. .+..+.+. -..-.+|++.++|+++++=...
T Consensus 128 V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~--~~~~l~~h----------------~~~V~sla~spdG~lLatgs~D 189 (493)
T PTZ00421 128 VGIVSFHPSAMNVLASAGADMVVNVWDVERGK--AVEVIKCH----------------SDQITSLEWNLDGSLLCTTSKD 189 (493)
T ss_pred EEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe--EEEEEcCC----------------CCceEEEEEECCCCEEEEecCC
Confidence 3567888865 577776667889999987421 12222111 1124678999999988888888
Q ss_pred CEEEEEc
Q 011333 164 MAIRKIS 170 (488)
Q Consensus 164 ~rIrkid 170 (488)
+.|+.+|
T Consensus 190 g~IrIwD 196 (493)
T PTZ00421 190 KKLNIID 196 (493)
T ss_pred CEEEEEE
Confidence 9999999
No 118
>PRK03629 tolB translocation protein TolB; Provisional
Probab=64.84 E-value=2e+02 Score=30.75 Aligned_cols=72 Identities=18% Similarity=0.261 Sum_probs=41.6
Q ss_pred EEEEccCCc-EEEE-E-CCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc--EEEEEC
Q 011333 87 SVEVLPGGE-LLIL-D-SANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN--IYIADT 161 (488)
Q Consensus 87 GIaVd~dG~-LYVa-D-~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~--LYVAD~ 161 (488)
.++++|||. |+++ + .++.+|+.++.++ +.+..+.... ......++.+||+ +|++|.
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~t---g~~~~lt~~~----------------~~~~~~~wSPDG~~I~f~s~~ 307 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLAS---GQIRQVTDGR----------------SNNTEPTWFPDSQNLAYTSDQ 307 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCC---CCEEEccCCC----------------CCcCceEECCCCCEEEEEeCC
Confidence 457888987 5554 3 3345799998876 3333332210 0123567888886 355664
Q ss_pred C-CCEEEEEc-CCC-cEEE
Q 011333 162 M-NMAIRKIS-DSG-VTTI 177 (488)
Q Consensus 162 ~-N~rIrkid-~gg-VttI 177 (488)
. ..+|.+++ +++ +..+
T Consensus 308 ~g~~~Iy~~d~~~g~~~~l 326 (429)
T PRK03629 308 AGRPQVYKVNINGGAPQRI 326 (429)
T ss_pred CCCceEEEEECCCCCeEEe
Confidence 3 45788887 443 4444
No 119
>PTZ00420 coronin; Provisional
Probab=64.80 E-value=2.5e+02 Score=31.78 Aligned_cols=121 Identities=12% Similarity=0.074 Sum_probs=64.7
Q ss_pred CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333 84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 163 (488)
Q Consensus 84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N 163 (488)
....++++++|.++++-...+.|+.+|+..+. .+..+.+. .|. ..... + .+ ..+.+++..+++=..+
T Consensus 169 ~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~--~i~tl~gH----~g~---~~s~~-v-~~--~~fs~d~~~IlTtG~d 235 (568)
T PTZ00420 169 KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE--IASSFHIH----DGG---KNTKN-I-WI--DGLGGDDNYILSTGFS 235 (568)
T ss_pred cEEEEEECCCCCEEEEEecCCEEEEEECCCCc--EEEEEecc----cCC---ceeEE-E-Ee--eeEcCCCCEEEEEEcC
Confidence 35678889999998887777889999987532 22333222 110 00000 0 00 1123466655542222
Q ss_pred ----CEEEEEc-C--CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 011333 164 ----MAIRKIS-D--SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC 233 (488)
Q Consensus 164 ----~rIrkid-~--gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~ 233 (488)
+.|+.+| . +. +.++...... .+.--.+..++|.+|++-.+.+.|+.++...+.+
T Consensus 236 ~~~~R~VkLWDlr~~~~pl~~~~ld~~~----------------~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~ 297 (568)
T PTZ00420 236 KNNMREMKLWDLKNTTSALVTMSIDNAS----------------APLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI 297 (568)
T ss_pred CCCccEEEEEECCCCCCceEEEEecCCc----------------cceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE
Confidence 3688877 2 22 3332111000 0001123455689999999999999998865443
No 120
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=64.32 E-value=1.4e+02 Score=34.45 Aligned_cols=38 Identities=11% Similarity=0.210 Sum_probs=24.8
Q ss_pred cCCcceEEEcCCCcEEEEECCCCEEEEEc--CCC-cEEEeC
Q 011333 142 MNHPKGLTVDDRGNIYIADTMNMAIRKIS--DSG-VTTIAG 179 (488)
Q Consensus 142 Ln~P~GIAvD~dG~LYVAD~~N~rIrkid--~gg-VttIaG 179 (488)
++.-..+.+.|+.+...+-+..+.||..| .|. |..+.|
T Consensus 535 lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G 575 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG 575 (707)
T ss_pred ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC
Confidence 44445688888877666666667888888 454 555544
No 121
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=64.31 E-value=1.5e+02 Score=29.56 Aligned_cols=111 Identities=20% Similarity=0.318 Sum_probs=54.1
Q ss_pred ceEEEEccCCcEEEEECCCCeEEEEeCC---CCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEEC
Q 011333 85 PYSVEVLPGGELLILDSANSNLYRISSS---LSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT 161 (488)
Q Consensus 85 P~GIaVd~dG~LYVaD~~n~rI~kid~~---g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~ 161 (488)
=.-|+..|+|.||+... +.+++.++. +...-.....+|. .|+ .+|. .|++|+.|.||..+.
T Consensus 36 ~~~i~~~P~g~lY~I~~--~~lY~~~~~~~~~~~~~~~~~~Ig~----g~W-------~~F~---~i~~d~~G~LYaV~~ 99 (229)
T PF14517_consen 36 FRDIAAGPNGRLYAIRN--DGLYRGSPSSSGGNTWDSGSKQIGD----GGW-------NSFK---FIFFDPTGVLYAVTP 99 (229)
T ss_dssp -SEEEE-TTS-EEEEET--TEEEEES---STT--HHHH-EEEE-----S-G-------GG-S---EEEE-TTS-EEEEET
T ss_pred cceEEEcCCceEEEEEC--CceEEecCCccCcccccccCccccc----Ccc-------ccee---EEEecCCccEEEecc
Confidence 34677889999999984 488888432 1110011122222 111 1233 799999999999886
Q ss_pred CCCEEEEEc---CCC-------cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEE-EcCC
Q 011333 162 MNMAIRKIS---DSG-------VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREI-QLHF 230 (488)
Q Consensus 162 ~N~rIrkid---~gg-------VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI-~~~g 230 (488)
+..+.+.. ++. -+.|.+..+ +. ....+.+.+|.||+.+.+ +++.+. .+.+
T Consensus 100 -~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW----------------~~-f~~vfa~~~GvLY~i~~d-g~~~~~~~p~~ 160 (229)
T PF14517_consen 100 -DGKLYRHPRPTNGSDNWIGGSGKKIGGTGW----------------ND-FDAVFAGPNGVLYAITPD-GRLYRRYRPDG 160 (229)
T ss_dssp -T-EEEEES---STT--HHH-HSEEEE-SSG----------------GG-EEEEEE-TTS-EEEEETT-E-EEEE---SS
T ss_pred -ccceeeccCCCccCcchhhccceecccCCC----------------cc-ceEEEeCCCccEEEEcCC-CceEEeCCCCC
Confidence 55666655 221 133322211 12 233458999999999965 467666 4443
No 122
>COG4246 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.29 E-value=1.5e+02 Score=30.44 Aligned_cols=77 Identities=19% Similarity=0.336 Sum_probs=42.9
Q ss_pred CceEEEEccCCc--EEEEECCC---CeEEEEeCCCCc----ccccEEEecCCCCccccCCCccccccc-CCcceEEEcCC
Q 011333 84 EPYSVEVLPGGE--LLILDSAN---SNLYRISSSLSL----YSRPKLVAGSAEGYSGHVDGKPREARM-NHPKGLTVDDR 153 (488)
Q Consensus 84 ~P~GIaVd~dG~--LYVaD~~n---~rI~kid~~g~~----~g~i~tvaG~~~G~~G~~dG~a~~a~L-n~P~GIAvD~d 153 (488)
.-..+++-++|. +-|+|.+. ++|.+ |.++.. .++++...+. +|.+...+. -...|+|+- +
T Consensus 75 alSairf~~dG~~fiav~DtG~wfeg~i~r-Da~grl~Gl~dgr~~pm~d~--------~Gqpi~~K~e~DaEGLAvr-d 144 (340)
T COG4246 75 ALSAIRFLPDGSQFIAVTDTGHWFEGKIQR-DANGRLAGLTDGRLTPMRDL--------DGQPIQEKWEVDAEGLAVR-D 144 (340)
T ss_pred chheeEeccCCceeEEEeecCceEEEEEEe-ccCCCcccccccceeecccC--------CCCCCcchhccccccceEe-c
Confidence 445677888885 44567654 23433 223211 1222222221 333222222 245689997 8
Q ss_pred CcEEEEECCCCEEEEEc
Q 011333 154 GNIYIADTMNMAIRKIS 170 (488)
Q Consensus 154 G~LYVAD~~N~rIrkid 170 (488)
|..+|+=-.+|||..|-
T Consensus 145 G~~~VsfEr~hRI~iyp 161 (340)
T COG4246 145 GDALVSFERDHRIWIYP 161 (340)
T ss_pred CceEEEeeccceeEEec
Confidence 99999877799998886
No 123
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=59.28 E-value=1.8e+02 Score=29.67 Aligned_cols=81 Identities=16% Similarity=0.244 Sum_probs=47.0
Q ss_pred cCCc-ceEEEcCCCcEEEEECCCCEEEEEc--CCCc-EEEeCCccCCCCCCCCCCcccccC-CCCCeeEEECCCCeEEEE
Q 011333 142 MNHP-KGLTVDDRGNIYIADTMNMAIRKIS--DSGV-TTIAGGKWGRGGGHVDGPSEDAKF-SNDFDVVYIGSSCSLLVI 216 (488)
Q Consensus 142 Ln~P-~GIAvD~dG~LYVAD~~N~rIrkid--~ggV-ttIaGg~~g~~~g~~dG~~~~a~f-~~P~gIa~vd~~G~LYVa 216 (488)
|.+| +.+.+.++|+.-.+-..+..||.+| .|.+ ....|-.+.. ...+-.| ++...|+-=..+|.+|+=
T Consensus 182 ~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~e-------ykldc~l~qsdthV~sgSEDG~Vy~w 254 (307)
T KOG0316|consen 182 FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNME-------YKLDCCLNQSDTHVFSGSEDGKVYFW 254 (307)
T ss_pred cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccce-------eeeeeeecccceeEEeccCCceEEEE
Confidence 5555 4899999999999999999999999 3443 3333322211 0112223 233444422347778887
Q ss_pred ECCC-CeEEEEEcC
Q 011333 217 DRGN-RAIREIQLH 229 (488)
Q Consensus 217 D~gN-~rIrkI~~~ 229 (488)
|--+ ..|.++...
T Consensus 255 dLvd~~~~sk~~~~ 268 (307)
T KOG0316|consen 255 DLVDETQISKLSVV 268 (307)
T ss_pred EeccceeeeeeccC
Confidence 7644 344444433
No 124
>PRK01742 tolB translocation protein TolB; Provisional
Probab=59.27 E-value=2.5e+02 Score=29.94 Aligned_cols=65 Identities=17% Similarity=0.278 Sum_probs=36.7
Q ss_pred EEEEccCCc-EEEE-E-CCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEE-EEC
Q 011333 87 SVEVLPGGE-LLIL-D-SANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYI-ADT 161 (488)
Q Consensus 87 GIaVd~dG~-LYVa-D-~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYV-AD~ 161 (488)
.++++|||. |+++ + .++-+|+.++.++ +.+..+.+.. ..-...++.+||. |++ +|.
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~---~~~~~lt~~~----------------~~~~~~~wSpDG~~i~f~s~~ 312 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGANG---GTPSQLTSGA----------------GNNTEPSWSPDGQSILFTSDR 312 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEECCC---CCeEeeccCC----------------CCcCCEEECCCCCEEEEEECC
Confidence 467788887 5443 3 3334688888765 2333332210 0123577888886 444 443
Q ss_pred -CCCEEEEEc
Q 011333 162 -MNMAIRKIS 170 (488)
Q Consensus 162 -~N~rIrkid 170 (488)
++-+|..++
T Consensus 313 ~g~~~I~~~~ 322 (429)
T PRK01742 313 SGSPQVYRMS 322 (429)
T ss_pred CCCceEEEEE
Confidence 345777777
No 125
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=59.24 E-value=44 Score=36.11 Aligned_cols=116 Identities=14% Similarity=0.159 Sum_probs=72.3
Q ss_pred CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333 84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 163 (488)
Q Consensus 84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N 163 (488)
.-..+++.|+|..+.+-+..+.=+.+|..++. .+...- |+.. .-.+|++.+||.|..+-...
T Consensus 263 RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~--ElL~QE-------GHs~---------~v~~iaf~~DGSL~~tGGlD 324 (459)
T KOG0272|consen 263 RVSRVAFHPSGKFLGTASFDSTWRLWDLETKS--ELLLQE-------GHSK---------GVFSIAFQPDGSLAATGGLD 324 (459)
T ss_pred hheeeeecCCCceeeecccccchhhcccccch--hhHhhc-------cccc---------ccceeEecCCCceeeccCcc
Confidence 33456777888877766555444445544321 122221 2211 23579999999988775443
Q ss_pred --CEEEEEcCCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEE
Q 011333 164 --MAIRKISDSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY 235 (488)
Q Consensus 164 --~rIrkid~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~ 235 (488)
.||.-+..|. |..++|- +..-.+|+ .+++|..+.+-.+.+.++++++....+.+
T Consensus 325 ~~~RvWDlRtgr~im~L~gH-----------------~k~I~~V~-fsPNGy~lATgs~Dnt~kVWDLR~r~~ly 381 (459)
T KOG0272|consen 325 SLGRVWDLRTGRCIMFLAGH-----------------IKEILSVA-FSPNGYHLATGSSDNTCKVWDLRMRSELY 381 (459)
T ss_pred chhheeecccCcEEEEeccc-----------------ccceeeEe-ECCCceEEeecCCCCcEEEeeecccccce
Confidence 3444444666 5555552 23457888 68899999999999999999988766544
No 126
>PRK00178 tolB translocation protein TolB; Provisional
Probab=57.90 E-value=2.5e+02 Score=29.59 Aligned_cols=64 Identities=17% Similarity=0.245 Sum_probs=32.9
Q ss_pred EEEccCCc-EEEE-E-CCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EE-EEECC
Q 011333 88 VEVLPGGE-LLIL-D-SANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IY-IADTM 162 (488)
Q Consensus 88 IaVd~dG~-LYVa-D-~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LY-VAD~~ 162 (488)
.+++|||+ |+++ + .++..|+.++.++ +....+.... + .....+++++|. |+ .+|..
T Consensus 248 ~~~SpDG~~la~~~~~~g~~~Iy~~d~~~---~~~~~lt~~~----~------------~~~~~~~spDg~~i~f~s~~~ 308 (430)
T PRK00178 248 PAWSPDGSKLAFVLSKDGNPEIYVMDLAS---RQLSRVTNHP----A------------IDTEPFWGKDGRTLYFTSDRG 308 (430)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCC---CCeEEcccCC----C------------CcCCeEECCCCCEEEEEECCC
Confidence 56677776 4433 2 2345777777765 2333332210 0 122346777775 44 44433
Q ss_pred -CCEEEEEc
Q 011333 163 -NMAIRKIS 170 (488)
Q Consensus 163 -N~rIrkid 170 (488)
+..|.+++
T Consensus 309 g~~~iy~~d 317 (430)
T PRK00178 309 GKPQIYKVN 317 (430)
T ss_pred CCceEEEEE
Confidence 45788777
No 127
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=57.46 E-value=3.7e+02 Score=31.47 Aligned_cols=76 Identities=13% Similarity=0.112 Sum_probs=56.3
Q ss_pred cCCcceEEEcCCCcEEEEECCCCEEEEEc-CCC--cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC
Q 011333 142 MNHPKGLTVDDRGNIYIADTMNMAIRKIS-DSG--VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR 218 (488)
Q Consensus 142 Ln~P~GIAvD~dG~LYVAD~~N~rIrkid-~gg--VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~ 218 (488)
+..-+.+++.+||.+.++-...+.|+.++ ..+ +.|+..-. +.-.++. +...|+..++-+
T Consensus 350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHt-----------------s~Vt~v~-f~~~g~~llssS 411 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHT-----------------SGVTAVQ-FTARGNVLLSSS 411 (893)
T ss_pred ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCC-----------------CceEEEE-EEecCCEEEEee
Confidence 66778899999999999988889999999 444 33332221 1235666 567899999999
Q ss_pred CCCeEEEEEcCCCceEE
Q 011333 219 GNRAIREIQLHFDDCAY 235 (488)
Q Consensus 219 gN~rIrkI~~~g~~~~~ 235 (488)
-.++||.+|+.-..+..
T Consensus 412 LDGtVRAwDlkRYrNfR 428 (893)
T KOG0291|consen 412 LDGTVRAWDLKRYRNFR 428 (893)
T ss_pred cCCeEEeeeecccceee
Confidence 99999999988654433
No 128
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=56.95 E-value=2.4e+02 Score=28.98 Aligned_cols=118 Identities=12% Similarity=0.106 Sum_probs=67.6
Q ss_pred CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333 84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 163 (488)
Q Consensus 84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N 163 (488)
+-..+.+.||+..+.+ .++..|+.+|.+...-.-+.++.|. -+.-..|.|-.+|.-..+-...
T Consensus 42 qVNrLeiTpdk~~LAa-a~~qhvRlyD~~S~np~Pv~t~e~h----------------~kNVtaVgF~~dgrWMyTgseD 104 (311)
T KOG0315|consen 42 QVNRLEITPDKKDLAA-AGNQHVRLYDLNSNNPNPVATFEGH----------------TKNVTAVGFQCDGRWMYTGSED 104 (311)
T ss_pred ceeeEEEcCCcchhhh-ccCCeeEEEEccCCCCCceeEEecc----------------CCceEEEEEeecCeEEEecCCC
Confidence 3446778888775444 4577899998875221112222221 1223456677778766665555
Q ss_pred CEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCC-CeeEEECCCCeEEEEECCCCeEEEEEcCCCceEE
Q 011333 164 MAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSND-FDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY 235 (488)
Q Consensus 164 ~rIrkid~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P-~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~ 235 (488)
+.++..|-... .+.. +-+++.| +.|++-+..+.|++.|. ++.||..|+..+.|.-
T Consensus 105 gt~kIWdlR~~--~~qR--------------~~~~~spVn~vvlhpnQteLis~dq-sg~irvWDl~~~~c~~ 160 (311)
T KOG0315|consen 105 GTVKIWDLRSL--SCQR--------------NYQHNSPVNTVVLHPNQTELISGDQ-SGNIRVWDLGENSCTH 160 (311)
T ss_pred ceEEEEeccCc--ccch--------------hccCCCCcceEEecCCcceEEeecC-CCcEEEEEccCCcccc
Confidence 66666652211 0100 1123333 56776666888999885 6889999988766653
No 129
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=56.49 E-value=3.3e+02 Score=30.55 Aligned_cols=92 Identities=21% Similarity=0.211 Sum_probs=59.0
Q ss_pred CCcceEEEcCCCcEEEEECCCCEEEEEcCC--CcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC
Q 011333 143 NHPKGLTVDDRGNIYIADTMNMAIRKISDS--GVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN 220 (488)
Q Consensus 143 n~P~GIAvD~dG~LYVAD~~N~rIrkid~g--gVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN 220 (488)
+.-+.+++.++|.-+++-...++|...+.+ .-..++|.. .-+.-.+++ ....+.|+.+-. .
T Consensus 321 K~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~---------------h~nqI~~~~-~~~~~~~~t~g~-D 383 (603)
T KOG0318|consen 321 KSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKG---------------HTNQIKGMA-ASESGELFTIGW-D 383 (603)
T ss_pred cceeEEEEcCCCCEEEeeccCceEEEEecCCcccccccccc---------------ccceEEEEe-ecCCCcEEEEec-C
Confidence 445678899988755555557777777722 222333321 123446777 566688888776 4
Q ss_pred CeEEEEEcCCCceEEe---ccCCCcceEEEEecC
Q 011333 221 RAIREIQLHFDDCAYQ---YGSSFPLGIAVLLAA 251 (488)
Q Consensus 221 ~rIrkI~~~g~~~~~~---~~~g~P~GIav~~g~ 251 (488)
+.|+++++.+..++.. .....|.|+|+....
T Consensus 384 d~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~ 417 (603)
T KOG0318|consen 384 DTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDG 417 (603)
T ss_pred CeEEEEecccCcccccceeecCCCceeEEEcCCC
Confidence 7899999876655543 344579999988663
No 130
>PLN00181 protein SPA1-RELATED; Provisional
Probab=55.15 E-value=3.9e+02 Score=30.96 Aligned_cols=109 Identities=8% Similarity=-0.037 Sum_probs=62.2
Q ss_pred eEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEEEEECCC
Q 011333 86 YSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIADTMN 163 (488)
Q Consensus 86 ~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LYVAD~~N 163 (488)
.++++++ ++.++++-...+.|+.++..++. .+..+.+. -..-.+|++++ +|+++++=...
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~--~~~~~~~H----------------~~~V~~l~~~p~~~~~L~Sgs~D 597 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQ--LVTEMKEH----------------EKRVWSIDYSSADPTLLASGSDD 597 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCe--EEEEecCC----------------CCCEEEEEEcCCCCCEEEEEcCC
Confidence 4566655 45556655567788888876421 22222221 11235788875 67887777677
Q ss_pred CEEEEEc-C-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333 164 MAIRKIS-D-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF 230 (488)
Q Consensus 164 ~rIrkid-~-gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g 230 (488)
+.|+.++ . +. +.++... .....+.+.+.+|.++++-..++.|+.++...
T Consensus 598 g~v~iWd~~~~~~~~~~~~~------------------~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~ 649 (793)
T PLN00181 598 GSVKLWSINQGVSIGTIKTK------------------ANICCVQFPSESGRSLAFGSADHKVYYYDLRN 649 (793)
T ss_pred CEEEEEECCCCcEEEEEecC------------------CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence 8888888 3 32 3333211 01234444345566666666677777777653
No 131
>PRK01029 tolB translocation protein TolB; Provisional
Probab=53.85 E-value=3.1e+02 Score=29.43 Aligned_cols=74 Identities=14% Similarity=0.187 Sum_probs=37.3
Q ss_pred EEEEccCCc-EE-EEEC-CCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEE-EC
Q 011333 87 SVEVLPGGE-LL-ILDS-ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA-DT 161 (488)
Q Consensus 87 GIaVd~dG~-LY-VaD~-~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVA-D~ 161 (488)
..+++|||. |+ ++|. +..+|++++.++.. +....+... .......++.+||+ |+++ +.
T Consensus 285 ~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g-~~~~~lt~~----------------~~~~~~p~wSPDG~~Laf~~~~ 347 (428)
T PRK01029 285 NPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG-QSPRLLTKK----------------YRNSSCPAWSPDGKKIAFCSVI 347 (428)
T ss_pred CeEECCCCCEEEEEECCCCCceEEEEECcccc-cceEEeccC----------------CCCccceeECCCCCEEEEEEcC
Confidence 457788887 44 4443 33468877654210 122222111 01123456788886 4443 32
Q ss_pred -CCCEEEEEc-CCC-cEEE
Q 011333 162 -MNMAIRKIS-DSG-VTTI 177 (488)
Q Consensus 162 -~N~rIrkid-~gg-VttI 177 (488)
+..+|..++ .++ ...+
T Consensus 348 ~g~~~I~v~dl~~g~~~~L 366 (428)
T PRK01029 348 KGVRQICVYDLATGRDYQL 366 (428)
T ss_pred CCCcEEEEEECCCCCeEEc
Confidence 235788888 333 4444
No 132
>PRK02889 tolB translocation protein TolB; Provisional
Probab=53.61 E-value=3e+02 Score=29.27 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=15.1
Q ss_pred eEEEcCCCc-E-EEEEC-CCCEEEEEc
Q 011333 147 GLTVDDRGN-I-YIADT-MNMAIRKIS 170 (488)
Q Consensus 147 GIAvD~dG~-L-YVAD~-~N~rIrkid 170 (488)
..++++||. | |++|. ++..|..++
T Consensus 288 ~~~wSpDG~~l~f~s~~~g~~~Iy~~~ 314 (427)
T PRK02889 288 EPFFSPDGRSIYFTSDRGGAPQIYRMP 314 (427)
T ss_pred CeEEcCCCCEEEEEecCCCCcEEEEEE
Confidence 356788886 4 44553 345777777
No 133
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=52.95 E-value=2.9e+02 Score=28.85 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=16.3
Q ss_pred EEEccCCcEEEEECCCCeEEEEeCCC
Q 011333 88 VEVLPGGELLILDSANSNLYRISSSL 113 (488)
Q Consensus 88 IaVd~dG~LYVaD~~n~rI~kid~~g 113 (488)
++++ +|.||+.+. ++.++.+|.++
T Consensus 116 ~~v~-~~~v~v~~~-~g~l~ald~~t 139 (394)
T PRK11138 116 VTVA-GGKVYIGSE-KGQVYALNAED 139 (394)
T ss_pred cEEE-CCEEEEEcC-CCEEEEEECCC
Confidence 3443 577888764 56788888764
No 134
>PRK02889 tolB translocation protein TolB; Provisional
Probab=52.37 E-value=3.2e+02 Score=29.12 Aligned_cols=65 Identities=22% Similarity=0.262 Sum_probs=34.6
Q ss_pred EEEEccCCc-EEEEE--CCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEE-E-
Q 011333 87 SVEVLPGGE-LLILD--SANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA-D- 160 (488)
Q Consensus 87 GIaVd~dG~-LYVaD--~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVA-D- 160 (488)
..+++|||+ |+++. .++..|+.++..+ ++...+... .| .-...++.+||+ |+++ +
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~---g~~~~l~~~----~g------------~~~~~~~SPDG~~la~~~~~ 260 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLAT---GRRRVVANF----KG------------SNSAPAWSPDGRTLAVALSR 260 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCC---CCEEEeecC----CC------------CccceEECCCCCEEEEEEcc
Confidence 345677776 43333 2335688888765 333333221 11 112467788885 5443 3
Q ss_pred CCCCEEEEEc
Q 011333 161 TMNMAIRKIS 170 (488)
Q Consensus 161 ~~N~rIrkid 170 (488)
.++.+|..++
T Consensus 261 ~g~~~Iy~~d 270 (427)
T PRK02889 261 DGNSQIYTVN 270 (427)
T ss_pred CCCceEEEEE
Confidence 3456788877
No 135
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=52.34 E-value=2.9e+02 Score=28.63 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=14.7
Q ss_pred ceEEEcCCCc-EEEEECC--CCEEEEEc
Q 011333 146 KGLTVDDRGN-IYIADTM--NMAIRKIS 170 (488)
Q Consensus 146 ~GIAvD~dG~-LYVAD~~--N~rIrkid 170 (488)
..++++++|. |+++... ..+|..++
T Consensus 325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d 352 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGGGFNIAVMD 352 (417)
T ss_pred cCeEECCCCCEEEEEEccCCceEEEEEe
Confidence 3567777775 4555433 23677777
No 136
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=51.67 E-value=1.5e+02 Score=31.85 Aligned_cols=111 Identities=16% Similarity=0.195 Sum_probs=69.6
Q ss_pred CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333 84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 163 (488)
Q Consensus 84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N 163 (488)
.-..|+|||.++.|++-+....|-.+|..+++ -..++.|. ...-+|++|.+.--..|+-...
T Consensus 153 WVr~vavdP~n~wf~tgs~DrtikIwDlatg~--LkltltGh----------------i~~vr~vavS~rHpYlFs~ged 214 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFATGSADRTIKIWDLATGQ--LKLTLTGH----------------IETVRGVAVSKRHPYLFSAGED 214 (460)
T ss_pred eEEEEeeCCCceeEEecCCCceeEEEEcccCe--EEEeecch----------------hheeeeeeecccCceEEEecCC
Confidence 44678999987777777777888888887632 12333332 3446789998665555555556
Q ss_pred CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333 164 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF 230 (488)
Q Consensus 164 ~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g 230 (488)
..|.-+| .+. |...-| .|+.-++|+ +.+.-.++++-.....+|.+|...
T Consensus 215 k~VKCwDLe~nkvIR~YhG-----------------HlS~V~~L~-lhPTldvl~t~grDst~RvWDiRt 266 (460)
T KOG0285|consen 215 KQVKCWDLEYNKVIRHYHG-----------------HLSGVYCLD-LHPTLDVLVTGGRDSTIRVWDIRT 266 (460)
T ss_pred CeeEEEechhhhhHHHhcc-----------------ccceeEEEe-ccccceeEEecCCcceEEEeeecc
Confidence 6777777 444 333322 244556666 455566677666666677776654
No 137
>PRK04792 tolB translocation protein TolB; Provisional
Probab=51.38 E-value=3.4e+02 Score=29.22 Aligned_cols=65 Identities=12% Similarity=0.116 Sum_probs=34.5
Q ss_pred EEEEccCCc-E-EEEE-CCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEE-EC
Q 011333 87 SVEVLPGGE-L-LILD-SANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA-DT 161 (488)
Q Consensus 87 GIaVd~dG~-L-YVaD-~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVA-D~ 161 (488)
...++|||. | |+++ .+..+|+.++..+ +....+... .|. -...++++||+ |+++ +.
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~t---g~~~~lt~~----~g~------------~~~~~wSPDG~~La~~~~~ 282 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYT---QVREKVTSF----PGI------------NGAPRFSPDGKKLALVLSK 282 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCC---CCeEEecCC----CCC------------cCCeeECCCCCEEEEEEeC
Confidence 346677776 3 3333 2345788888765 233333211 010 12357888886 6554 32
Q ss_pred -CCCEEEEEc
Q 011333 162 -MNMAIRKIS 170 (488)
Q Consensus 162 -~N~rIrkid 170 (488)
++..|..++
T Consensus 283 ~g~~~Iy~~d 292 (448)
T PRK04792 283 DGQPEIYVVD 292 (448)
T ss_pred CCCeEEEEEE
Confidence 345688887
No 138
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=51.29 E-value=1.6e+02 Score=33.60 Aligned_cols=126 Identities=12% Similarity=0.139 Sum_probs=76.9
Q ss_pred CceEEEE-ccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECC
Q 011333 84 EPYSVEV-LPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM 162 (488)
Q Consensus 84 ~P~GIaV-d~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~ 162 (488)
+-..|++ ..+.+|+++-.-.++|..++.+.+. - ++.++.....-..-+ ...-..--.+|..+.|.++|+-..
T Consensus 119 YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~---~-~l~~s~n~~t~~sl~---sG~k~siYSLA~N~t~t~ivsGgt 191 (735)
T KOG0308|consen 119 YVKCLAYIAKNNELVASGGLDRKIFLWDINTGT---A-TLVASFNNVTVNSLG---SGPKDSIYSLAMNQTGTIIVSGGT 191 (735)
T ss_pred hheeeeecccCceeEEecCCCccEEEEEccCcc---h-hhhhhccccccccCC---CCCccceeeeecCCcceEEEecCc
Confidence 4456666 6677888888778899999988532 1 222221110000000 000112236788888889998888
Q ss_pred CCEEEEEcCC---CcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 011333 163 NMAIRKISDS---GVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA 234 (488)
Q Consensus 163 N~rIrkid~g---gVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~ 234 (488)
+..||.+|.. ++..+-|-.. +-..|. ++++|+-.++-+..+.|+.+++....|.
T Consensus 192 ek~lr~wDprt~~kimkLrGHTd-----------------NVr~ll-~~dDGt~~ls~sSDgtIrlWdLgqQrCl 248 (735)
T KOG0308|consen 192 EKDLRLWDPRTCKKIMKLRGHTD-----------------NVRVLL-VNDDGTRLLSASSDGTIRLWDLGQQRCL 248 (735)
T ss_pred ccceEEeccccccceeeeecccc-----------------ceEEEE-EcCCCCeEeecCCCceEEeeecccccee
Confidence 9999999932 2555544321 223454 6778877777777888888888776554
No 139
>PRK03629 tolB translocation protein TolB; Provisional
Probab=50.70 E-value=3.4e+02 Score=28.98 Aligned_cols=31 Identities=13% Similarity=0.238 Sum_probs=19.0
Q ss_pred eEEEcCCCc-EEEE-E-CCCCEEEEEc-CC-CcEEE
Q 011333 147 GLTVDDRGN-IYIA-D-TMNMAIRKIS-DS-GVTTI 177 (488)
Q Consensus 147 GIAvD~dG~-LYVA-D-~~N~rIrkid-~g-gVttI 177 (488)
.+++.+||. |+++ + .++..|+.++ ++ .+..+
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l 282 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV 282 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc
Confidence 468889996 6554 3 2345788888 33 34444
No 140
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.98 E-value=2e+02 Score=34.23 Aligned_cols=78 Identities=10% Similarity=0.164 Sum_probs=54.8
Q ss_pred CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333 84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 163 (488)
Q Consensus 84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N 163 (488)
.-.||++.|.-=..++...++.|+-+|-. .-+++..+ .+| ||+ -+||++.+.+-|||+-...
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYR------M~tli~rF---deH-dGp--------VRgv~FH~~qplFVSGGDD 72 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYR------MGTLIDRF---DEH-DGP--------VRGVDFHPTQPLFVSGGDD 72 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhh------hhhHHhhh---hcc-CCc--------cceeeecCCCCeEEecCCc
Confidence 55688999877777777788999999864 22344332 222 444 4689999999999997777
Q ss_pred CEEEEEc--CCC-cEEEeC
Q 011333 164 MAIRKIS--DSG-VTTIAG 179 (488)
Q Consensus 164 ~rIrkid--~gg-VttIaG 179 (488)
-.|++.+ ..+ +.|+.|
T Consensus 73 ykIkVWnYk~rrclftL~G 91 (1202)
T KOG0292|consen 73 YKIKVWNYKTRRCLFTLLG 91 (1202)
T ss_pred cEEEEEecccceehhhhcc
Confidence 8888877 333 455554
No 141
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=48.43 E-value=2.2e+02 Score=29.98 Aligned_cols=78 Identities=18% Similarity=0.281 Sum_probs=49.0
Q ss_pred eEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCCE
Q 011333 86 YSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMA 165 (488)
Q Consensus 86 ~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~r 165 (488)
..|.+.|.|+.+.+-.....++.+|-++ ...++..- -..++ -..-+.+-..+.|+|||+-+..+.
T Consensus 220 rsiSfHPsGefllvgTdHp~~rlYdv~T-----~Qcfvsan-Pd~qh---------t~ai~~V~Ys~t~~lYvTaSkDG~ 284 (430)
T KOG0640|consen 220 RSISFHPSGEFLLVGTDHPTLRLYDVNT-----YQCFVSAN-PDDQH---------TGAITQVRYSSTGSLYVTASKDGA 284 (430)
T ss_pred eeEeecCCCceEEEecCCCceeEEeccc-----eeEeeecC-ccccc---------ccceeEEEecCCccEEEEeccCCc
Confidence 4677788888666555555566666553 22333221 11111 122456778899999999999999
Q ss_pred EEEEc--CCC-cEEEe
Q 011333 166 IRKIS--DSG-VTTIA 178 (488)
Q Consensus 166 Irkid--~gg-VttIa 178 (488)
|+.+| .++ |.+|.
T Consensus 285 IklwDGVS~rCv~t~~ 300 (430)
T KOG0640|consen 285 IKLWDGVSNRCVRTIG 300 (430)
T ss_pred EEeeccccHHHHHHHH
Confidence 99998 455 77764
No 142
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=47.33 E-value=1.1e+02 Score=26.20 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=33.0
Q ss_pred ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333 85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM 164 (488)
Q Consensus 85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~ 164 (488)
+..+.+..+|+|++.|..+..|+.-... .+ ..+..+.+.++|+|.+-|..+.
T Consensus 55 ~~~l~l~~dGnLvl~~~~g~~vW~S~t~----------~~------------------~~~~~~~L~ddGnlvl~~~~~~ 106 (114)
T smart00108 55 SCTLTLQSDGNLVLYDGDGRVVWSSNTT----------GA------------------NGNYVLVLLDDGNLVIYDSDGN 106 (114)
T ss_pred CEEEEEeCCCCEEEEeCCCCEEEEeccc----------CC------------------CCceEEEEeCCCCEEEECCCCC
Confidence 4567788899999988765554332111 00 1244577888999888886443
No 143
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=47.32 E-value=2.9e+02 Score=30.20 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=27.6
Q ss_pred CCcceEEEcC-CCcEEEEECCCCEEEEEc--CCCcEEEeCCc
Q 011333 143 NHPKGLTVDD-RGNIYIADTMNMAIRKIS--DSGVTTIAGGK 181 (488)
Q Consensus 143 n~P~GIAvD~-dG~LYVAD~~N~rIrkid--~ggVttIaGg~ 181 (488)
-+-++|..|+ +++|+|+=+.-+.|.+|+ ++.|.=+.|..
T Consensus 271 ~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 271 LHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp --EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred cccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 4677999998 778999988888999999 45566566644
No 144
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=46.62 E-value=22 Score=38.86 Aligned_cols=114 Identities=16% Similarity=0.061 Sum_probs=70.5
Q ss_pred cCCcceEEEcCCCcEEEEECCCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC
Q 011333 142 MNHPKGLTVDDRGNIYIADTMNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG 219 (488)
Q Consensus 142 Ln~P~GIAvD~dG~LYVAD~~N~rIrkid--~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~g 219 (488)
|.-|.|..+|.+|+.+++|-..|.++++. ..++....++... .+ .....|..|.+++ +.+++-++|+|..
T Consensus 167 lqvhyg~t~df~~~~d~TgV~mH~t~kp~pkla~~~L~l~~~tv------p~-~~~~~f~~~tsc~-v~~n~~ihvfa~r 238 (501)
T KOG3567|consen 167 LQVHYGLTIDFDGNYDVTGVGMHQTEKPQPKLAKTMLLLGDGTV------PG-EGTKHFETPTSCA-VEENGPIHVFAYR 238 (501)
T ss_pred EEeccccccCCCCCcccccceeeeeccCCchhhceEEeecCCcc------CC-CCccccCCCceEE-EecCcceeeEEee
Confidence 67899999999999999999999999988 3444444433111 11 2234588899999 7888999999964
Q ss_pred C-CeEEEEEcCCCc-------eEEeccCCC--------cceEEEEecCCceEEEEEEEEe
Q 011333 220 N-RAIREIQLHFDD-------CAYQYGSSF--------PLGIAVLLAAGFFGYMLALLQR 263 (488)
Q Consensus 220 N-~rIrkI~~~g~~-------~~~~~~~g~--------P~GIav~~g~g~~Gy~~a~l~~ 263 (488)
. -++.+....|.. ..+.-+.-. |.+-.+.++.|-.+-+-|.+|.
T Consensus 239 ~hTh~Lgk~vsG~lv~q~~~g~w~~ig~r~Pq~pqlf~~v~~~~~iadgD~~~vrC~~~s 298 (501)
T KOG3567|consen 239 CHTHILGKVVSGYLVAQKHEGHWTLIGRRDPQLPQLFEPVNHIVCVADGDNQRVRCFFQS 298 (501)
T ss_pred eeehhhcceeeeeEeeeccCcceeeccccCCCchhhhcCCCcceeeecCCceEEEEEEcc
Confidence 3 233333333321 111111111 2223455556666777777766
No 145
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=46.22 E-value=2.1e+02 Score=28.68 Aligned_cols=82 Identities=18% Similarity=0.236 Sum_probs=44.8
Q ss_pred eEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc--EEEEECCC
Q 011333 86 YSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN--IYIADTMN 163 (488)
Q Consensus 86 ~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~--LYVAD~~N 163 (488)
+|.+| -+|.||.--.+...|.|++.....+.....+.+. +..+ -..-...=..=-++|+|..|- ||-+...+
T Consensus 72 tG~vV-YngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A--~~~n---~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~ 145 (250)
T PF02191_consen 72 TGHVV-YNGSLYYNKYNSRNIVKYDLTTRSVVARRELPGA--GYNN---RFPYYWSGYTDIDFAVDENGLWVIYATEDNN 145 (250)
T ss_pred CCeEE-ECCcEEEEecCCceEEEEECcCCcEEEEEECCcc--cccc---ccceecCCCceEEEEEcCCCEEEEEecCCCC
Confidence 35555 5889999888889999999986432212223221 1110 000000001113799998883 55555443
Q ss_pred --CEEEEEcCCC
Q 011333 164 --MAIRKISDSG 173 (488)
Q Consensus 164 --~rIrkid~gg 173 (488)
-.|-|+|...
T Consensus 146 g~ivvskld~~t 157 (250)
T PF02191_consen 146 GNIVVSKLDPET 157 (250)
T ss_pred CcEEEEeeCccc
Confidence 4566888544
No 146
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=45.93 E-value=3.5e+02 Score=27.81 Aligned_cols=108 Identities=17% Similarity=0.188 Sum_probs=64.4
Q ss_pred CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEE---EcCCCcEEEEE
Q 011333 84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLT---VDDRGNIYIAD 160 (488)
Q Consensus 84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIA---vD~dG~LYVAD 160 (488)
.+..+.+.++|++...-.+ +.|..++++. ...+ ..+..|..|. ..|+-.+|||-
T Consensus 186 ~VtSlEvs~dG~ilTia~g-ssV~Fwdaks-----f~~l-----------------Ks~k~P~nV~SASL~P~k~~fVaG 242 (334)
T KOG0278|consen 186 PVTSLEVSQDGRILTIAYG-SSVKFWDAKS-----FGLL-----------------KSYKMPCNVESASLHPKKEFFVAG 242 (334)
T ss_pred CCcceeeccCCCEEEEecC-ceeEEecccc-----ccce-----------------eeccCccccccccccCCCceEEec
Confidence 4566777777775444332 3455555542 0011 1144566554 34677899998
Q ss_pred CCCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333 161 TMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH 229 (488)
Q Consensus 161 ~~N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~ 229 (488)
.....++||| ..+...-.-.+ ..+.--.+|- ..++|.+|-+-+..+.||-+...
T Consensus 243 ged~~~~kfDy~TgeEi~~~nk--------------gh~gpVhcVr-FSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 243 GEDFKVYKFDYNTGEEIGSYNK--------------GHFGPVHCVR-FSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred CcceEEEEEeccCCceeeeccc--------------CCCCceEEEE-ECCCCceeeccCCCceEEEEEec
Confidence 8788999999 44432211000 1232335666 68899999999988888877654
No 147
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=45.31 E-value=5.2e+02 Score=29.95 Aligned_cols=106 Identities=9% Similarity=0.079 Sum_probs=64.0
Q ss_pred CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333 84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 163 (488)
Q Consensus 84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N 163 (488)
.-.|+++-+++.+.-|+ ..+.|+.++.+| ..+....|.. +.--.|+...++.++|+-..+
T Consensus 181 ~VRgL~vl~~~~flScs-NDg~Ir~w~~~g---e~l~~~~ght----------------n~vYsis~~~~~~~Ivs~gED 240 (745)
T KOG0301|consen 181 CVRGLAVLDDSHFLSCS-NDGSIRLWDLDG---EVLLEMHGHT----------------NFVYSISMALSDGLIVSTGED 240 (745)
T ss_pred heeeeEEecCCCeEeec-CCceEEEEeccC---ceeeeeeccc----------------eEEEEEEecCCCCeEEEecCC
Confidence 56789988776665554 457899999876 4455555541 122345555567788888888
Q ss_pred CEEEEEcCCC-cEEEe-CCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333 164 MAIRKISDSG-VTTIA-GGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH 229 (488)
Q Consensus 164 ~rIrkid~gg-VttIa-Gg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~ 229 (488)
+.+|..+.+. +.+|. .+. +-+++. +-.+|.|+|.-+ .++||.++..
T Consensus 241 rtlriW~~~e~~q~I~lPtt------------------siWsa~-~L~NgDIvvg~S-DG~VrVfT~~ 288 (745)
T KOG0301|consen 241 RTLRIWKKDECVQVITLPTT------------------SIWSAK-VLLNGDIVVGGS-DGRVRVFTVD 288 (745)
T ss_pred ceEEEeecCceEEEEecCcc------------------ceEEEE-EeeCCCEEEecc-CceEEEEEec
Confidence 8888888554 23322 111 224444 234566666543 4677777655
No 148
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.14 E-value=4.5e+02 Score=31.53 Aligned_cols=134 Identities=17% Similarity=0.190 Sum_probs=75.4
Q ss_pred EeecCCCCCCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCC
Q 011333 74 TVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR 153 (488)
Q Consensus 74 ~~~~G~~~l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~d 153 (488)
-++.|...+. +.+++.|.--|+|+-.....|..+..+-.+..++.+.- || +|.-.++-+++.
T Consensus 200 ~VLEGHDRGV--NwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcr-------gH---------~nnVssvlfhp~ 261 (1202)
T KOG0292|consen 200 HVLEGHDRGV--NWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCR-------GH---------YNNVSSVLFHPH 261 (1202)
T ss_pred eeeccccccc--ceEEecCCcceEEecCCcceeeEEEeccccceeehhhh-------cc---------cCCcceEEecCc
Confidence 3345544433 45677777778888766655555554432223333332 33 566778888988
Q ss_pred CcEEEEECCCCEEEEEc-CC--CcEEE----------eCCc--cCCCCCCCCCCcccccCC-CCCeeEEECCCCeEEEEE
Q 011333 154 GNIYIADTMNMAIRKIS-DS--GVTTI----------AGGK--WGRGGGHVDGPSEDAKFS-NDFDVVYIGSSCSLLVID 217 (488)
Q Consensus 154 G~LYVAD~~N~rIrkid-~g--gVttI----------aGg~--~g~~~g~~dG~~~~a~f~-~P~gIa~vd~~G~LYVaD 217 (488)
-++.++......||++| +. .|.++ +-.+ +-+.+|++.|... -++. .+-..| +..++-.||-|
T Consensus 262 q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~V-FkleRErpa~~-v~~n~LfYvkd 339 (1202)
T KOG0292|consen 262 QDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIV-FKLERERPAYA-VNGNGLFYVKD 339 (1202)
T ss_pred cceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEE-EEEcccCceEE-EcCCEEEEEcc
Confidence 89999988888888888 21 14443 2211 1112455555322 1232 344555 45555556654
Q ss_pred CCCCeEEEEEcCC
Q 011333 218 RGNRAIREIQLHF 230 (488)
Q Consensus 218 ~gN~rIrkI~~~g 230 (488)
..|+.+++..
T Consensus 340 ---~~i~~~d~~t 349 (1202)
T KOG0292|consen 340 ---RFIRSYDLRT 349 (1202)
T ss_pred ---ceEEeeeccc
Confidence 5677777664
No 149
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=45.04 E-value=3.6e+02 Score=27.69 Aligned_cols=22 Identities=23% Similarity=0.523 Sum_probs=15.9
Q ss_pred eEEEcCCCcEEEEECCCCEEEEEc
Q 011333 147 GLTVDDRGNIYIADTMNMAIRKIS 170 (488)
Q Consensus 147 GIAvD~dG~LYVAD~~N~rIrkid 170 (488)
..+++ ++.||+++ .+++|..++
T Consensus 274 ~p~~~-~~~vyv~~-~~G~l~~~d 295 (377)
T TIGR03300 274 GPAVD-DNRLYVTD-ADGVVVALD 295 (377)
T ss_pred CceEe-CCEEEEEC-CCCeEEEEE
Confidence 34554 57899887 467888888
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=44.92 E-value=2e+02 Score=32.04 Aligned_cols=65 Identities=8% Similarity=0.138 Sum_probs=47.9
Q ss_pred ceEEEcCCC-cEEEEECCCCEEEEEcCCC---cEEEeCCccCCCCCCCCCCcccccCCCCC-eeEEECCCCeEEEEECCC
Q 011333 146 KGLTVDDRG-NIYIADTMNMAIRKISDSG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDF-DVVYIGSSCSLLVIDRGN 220 (488)
Q Consensus 146 ~GIAvD~dG-~LYVAD~~N~rIrkid~gg---VttIaGg~~g~~~g~~dG~~~~a~f~~P~-gIa~vd~~G~LYVaD~gN 220 (488)
.|||+.+.. .|+|+=.+..+|..||.+. +.+++- ..|. .|+ +.++|..+++...+
T Consensus 212 ~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-------------------~~Plstva-f~~~G~~L~aG~s~ 271 (673)
T KOG4378|consen 212 RGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-------------------SHPLSTVA-FSECGTYLCAGNSK 271 (673)
T ss_pred CcceecCCccceEEEecccceEEEeecccccccceeee-------------------cCCcceee-ecCCceEEEeecCC
Confidence 499999965 5777777788999999332 333332 2333 456 67889999999999
Q ss_pred CeEEEEEcCC
Q 011333 221 RAIREIQLHF 230 (488)
Q Consensus 221 ~rIrkI~~~g 230 (488)
++|..+|+.+
T Consensus 272 G~~i~YD~R~ 281 (673)
T KOG4378|consen 272 GELIAYDMRS 281 (673)
T ss_pred ceEEEEeccc
Confidence 9999999876
No 151
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=44.17 E-value=1.2e+02 Score=26.14 Aligned_cols=24 Identities=17% Similarity=0.461 Sum_probs=17.1
Q ss_pred CceEEEEccCCcEEEEECCCCeEE
Q 011333 84 EPYSVEVLPGGELLILDSANSNLY 107 (488)
Q Consensus 84 ~P~GIaVd~dG~LYVaD~~n~rI~ 107 (488)
.+..+.+..+|+|++.|..+..|+
T Consensus 55 ~~~~l~l~~dGnLvl~~~~g~~vW 78 (116)
T cd00028 55 SSCTLTLQSDGNLVIYDGSGTVVW 78 (116)
T ss_pred CCEEEEEecCCCeEEEcCCCcEEE
Confidence 456677888999999887554443
No 152
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=43.94 E-value=2.4e+02 Score=32.69 Aligned_cols=112 Identities=12% Similarity=0.173 Sum_probs=67.5
Q ss_pred EEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCCEEE
Q 011333 88 VEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIR 167 (488)
Q Consensus 88 IaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~rIr 167 (488)
++++++|..+++-.+ ++|-.++..+ +.+....+. .. ....-+.+++++|+...++-..+..++
T Consensus 25 ~~~s~nG~~L~t~~~-d~Vi~idv~t---~~~~l~s~~----~e---------d~d~ita~~l~~d~~~L~~a~rs~llr 87 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACG-DRVIIIDVAT---GSIALPSGS----NE---------DEDEITALALTPDEEVLVTASRSQLLR 87 (775)
T ss_pred eeECCCCCEEEEecC-ceEEEEEccC---CceecccCC----cc---------chhhhheeeecCCccEEEEeeccceEE
Confidence 688999997777654 5788888765 333322221 11 244567899999998777777777788
Q ss_pred EEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCC-eeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 011333 168 KIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDF-DVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA 234 (488)
Q Consensus 168 kid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~-gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~ 234 (488)
.++ .+. +.+..... ..|. .++ +++.+.|.-+-.-.++|++++..+..|+
T Consensus 88 v~~L~tgk~irswKa~H-----------------e~Pvi~ma-~~~~g~LlAtggaD~~v~VWdi~~~~~t 140 (775)
T KOG0319|consen 88 VWSLPTGKLIRSWKAIH-----------------EAPVITMA-FDPTGTLLATGGADGRVKVWDIKNGYCT 140 (775)
T ss_pred EEEcccchHhHhHhhcc-----------------CCCeEEEE-EcCCCceEEeccccceEEEEEeeCCEEE
Confidence 877 343 33322210 1232 334 5666655444444577777777766664
No 153
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=42.42 E-value=5.5e+02 Score=30.89 Aligned_cols=64 Identities=6% Similarity=0.068 Sum_probs=43.8
Q ss_pred ceEEEcCCCcEEEEECCCCEEEEEcC--CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCe
Q 011333 146 KGLTVDDRGNIYIADTMNMAIRKISD--SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRA 222 (488)
Q Consensus 146 ~GIAvD~dG~LYVAD~~N~rIrkid~--gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~r 222 (488)
.+|+.++++.+.++=..-+.|..++. .. ++++-| .-..+-||+ +|+-|.-+-+-++.+.
T Consensus 133 ~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~-----------------H~s~VKGvs-~DP~Gky~ASqsdDrt 194 (942)
T KOG0973|consen 133 LDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG-----------------HQSLVKGVS-WDPIGKYFASQSDDRT 194 (942)
T ss_pred ceeccCCCccEEEEecccceEEEEccccceeeeeeec-----------------ccccccceE-ECCccCeeeeecCCce
Confidence 36788899989988877888888883 33 333322 123567887 6888887777776666
Q ss_pred EEEEE
Q 011333 223 IREIQ 227 (488)
Q Consensus 223 IrkI~ 227 (488)
|..+.
T Consensus 195 ikvwr 199 (942)
T KOG0973|consen 195 LKVWR 199 (942)
T ss_pred EEEEE
Confidence 66655
No 154
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=40.37 E-value=4.4e+02 Score=27.26 Aligned_cols=72 Identities=10% Similarity=0.099 Sum_probs=46.5
Q ss_pred CcceEEEcCCCcEEEEECCCCEEEEEc-CC--CcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC
Q 011333 144 HPKGLTVDDRGNIYIADTMNMAIRKIS-DS--GVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN 220 (488)
Q Consensus 144 ~P~GIAvD~dG~LYVAD~~N~rIrkid-~g--gVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN 220 (488)
.-+-++...++++||...++++|..++ .. .|.+|--- -.+-.+|. ++++|+-+-+-...
T Consensus 149 e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH-----------------~snCicI~-f~p~GryfA~GsAD 210 (313)
T KOG1407|consen 149 EVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAH-----------------PSNCICIE-FDPDGRYFATGSAD 210 (313)
T ss_pred eeeeeeecCCCCEEEEecCCceEEEEeccccccccccccC-----------------CcceEEEE-ECCCCceEeecccc
Confidence 345677778889999999999988887 32 24444322 12446777 68888766666555
Q ss_pred CeEEEEEcCCCce
Q 011333 221 RAIREIQLHFDDC 233 (488)
Q Consensus 221 ~rIrkI~~~g~~~ 233 (488)
..|.-.|++.-.|
T Consensus 211 AlvSLWD~~ELiC 223 (313)
T KOG1407|consen 211 ALVSLWDVDELIC 223 (313)
T ss_pred ceeeccChhHhhh
Confidence 5565566554333
No 155
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=39.99 E-value=2.5e+02 Score=31.06 Aligned_cols=87 Identities=16% Similarity=0.194 Sum_probs=54.0
Q ss_pred CCceEEEEccCC-cEEEEECCCCeEEEEeCCCCc-----------ccccEEEecCCCCccccCCCc--------------
Q 011333 83 IEPYSVEVLPGG-ELLILDSANSNLYRISSSLSL-----------YSRPKLVAGSAEGYSGHVDGK-------------- 136 (488)
Q Consensus 83 ~~P~GIaVd~dG-~LYVaD~~n~rI~kid~~g~~-----------~g~i~tvaG~~~G~~G~~dG~-------------- 136 (488)
.-|+.+-+.||+ ++|++-..+++|+.+|...+. +-.++.+.++.....-..|+.
T Consensus 300 ~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~ 379 (503)
T KOG0282|consen 300 KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKN 379 (503)
T ss_pred CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchh
Confidence 457788888888 899999999999999987543 112222222211111111111
Q ss_pred -ccccccCCcceEEEcCCCcEEEEECCCCEEEEEc
Q 011333 137 -PREARMNHPKGLTVDDRGNIYIADTMNMAIRKIS 170 (488)
Q Consensus 137 -a~~a~Ln~P~GIAvD~dG~LYVAD~~N~rIrkid 170 (488)
+..++...| .|++.|+|..++|....++|..++
T Consensus 380 i~~~~~hsmP-~~~~~P~~~~~~aQs~dN~i~ifs 413 (503)
T KOG0282|consen 380 IADPEMHTMP-CLTLHPNGKWFAAQSMDNYIAIFS 413 (503)
T ss_pred hcchhhccCc-ceecCCCCCeehhhccCceEEEEe
Confidence 111222233 477889999999999999998887
No 156
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=39.62 E-value=5.6e+02 Score=28.33 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=18.0
Q ss_pred EEEcCCCcEEEEECCCCEEEEEc
Q 011333 148 LTVDDRGNIYIADTMNMAIRKIS 170 (488)
Q Consensus 148 IAvD~dG~LYVAD~~N~rIrkid 170 (488)
..|.+++++.+....|+.|..+.
T Consensus 309 FeVShd~~fia~~G~~G~I~lLh 331 (514)
T KOG2055|consen 309 FEVSHDSNFIAIAGNNGHIHLLH 331 (514)
T ss_pred eEecCCCCeEEEcccCceEEeeh
Confidence 56778888777777788888887
No 157
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=39.57 E-value=2.3e+02 Score=31.27 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=16.2
Q ss_pred EEccCCcEEEEECCCCeEEEEeCCC
Q 011333 89 EVLPGGELLILDSANSNLYRISSSL 113 (488)
Q Consensus 89 aVd~dG~LYVaD~~n~rI~kid~~g 113 (488)
.|.+++.+.+....++.|..+...+
T Consensus 310 eVShd~~fia~~G~~G~I~lLhakT 334 (514)
T KOG2055|consen 310 EVSHDSNFIAIAGNNGHIHLLHAKT 334 (514)
T ss_pred EecCCCCeEEEcccCceEEeehhhh
Confidence 4566777555566667777776654
No 158
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=38.82 E-value=3.3e+02 Score=25.44 Aligned_cols=118 Identities=14% Similarity=0.156 Sum_probs=58.6
Q ss_pred ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333 85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM 164 (488)
Q Consensus 85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~ 164 (488)
+...+++ ++.+|++.. ++.|+.+++.+ |.+..-.... ... +......+....+-.+-.+|.||++.....
T Consensus 115 ~~~~~~~-~~~~~~~~~-~g~l~~~d~~t---G~~~w~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~ 184 (238)
T PF13360_consen 115 SSSPAVD-GDRLYVGTS-SGKLVALDPKT---GKLLWKYPVG-EPR----GSSPISSFSDINGSPVISDGRVYVSSGDGR 184 (238)
T ss_dssp -SEEEEE-TTEEEEEET-CSEEEEEETTT---TEEEEEEESS-TT-----SS--EEEETTEEEEEECCTTEEEEECCTSS
T ss_pred ccCceEe-cCEEEEEec-cCcEEEEecCC---CcEEEEeecC-CCC----CCcceeeecccccceEEECCEEEEEcCCCe
Confidence 3344444 445666664 67899999775 3332221110 000 000000122223333334668999886554
Q ss_pred EEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 011333 165 AIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD 232 (488)
Q Consensus 165 rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~ 232 (488)
+..++ ..+-...... +..+..+. ...++.||+.+ ..+.|..+++....
T Consensus 185 -~~~~d~~tg~~~w~~~-----------------~~~~~~~~-~~~~~~l~~~~-~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 185 -VVAVDLATGEKLWSKP-----------------ISGIYSLP-SVDGGTLYVTS-SDGRLYALDLKTGK 233 (238)
T ss_dssp -EEEEETTTTEEEEEEC-----------------SS-ECECE-ECCCTEEEEEE-TTTEEEEEETTTTE
T ss_pred -EEEEECCCCCEEEEec-----------------CCCccCCc-eeeCCEEEEEe-CCCEEEEEECCCCC
Confidence 45557 3332222111 11233333 46778899888 67899999887543
No 159
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=38.04 E-value=3.9e+02 Score=29.24 Aligned_cols=112 Identities=16% Similarity=0.233 Sum_probs=69.5
Q ss_pred CCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEE
Q 011333 82 GIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIAD 160 (488)
Q Consensus 82 l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD 160 (488)
.+.+...+..|||.=+|+-.....|..++.+|.. .+..+|. +-..-.+||+.+||. ++..+
T Consensus 312 ~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-------~~~W~gv-----------r~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 312 GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-------LGNWEGV-----------RDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred CCCcceeEEccCCceeEecCCCCcEEEecCCcch-------hhccccc-----------ccceeEEEEEcCCCcEEEEEe
Confidence 3456667777899888888877889899888522 2222111 112235899999996 44444
Q ss_pred CCCCEEEEEc-CCCcEE-EeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333 161 TMNMAIRKIS-DSGVTT-IAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF 230 (488)
Q Consensus 161 ~~N~rIrkid-~ggVtt-IaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g 230 (488)
...+|+.|+ ..++.. +... +..+ ..+. +..++.+..++-.++.|+..++..
T Consensus 374 -~d~~i~l~~~e~~~dr~lise--------------~~~i---ts~~-iS~d~k~~LvnL~~qei~LWDl~e 426 (519)
T KOG0293|consen 374 -VDKKIRLYNREARVDRGLISE--------------EQPI---TSFS-ISKDGKLALVNLQDQEIHLWDLEE 426 (519)
T ss_pred -cccceeeechhhhhhhccccc--------------cCce---eEEE-EcCCCcEEEEEcccCeeEEeecch
Confidence 356788777 333211 1110 0011 3445 567888888888888898888874
No 160
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=37.54 E-value=1.4e+02 Score=32.97 Aligned_cols=106 Identities=8% Similarity=0.119 Sum_probs=69.8
Q ss_pred CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCCEEEEEc--
Q 011333 93 GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKIS-- 170 (488)
Q Consensus 93 dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~rIrkid-- 170 (488)
.+.|+.+-...+.|..++.-... +.++++.|... .-..+++..+|.=|.+-.....|+..|
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~~-~~lrtf~gH~k----------------~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE 288 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDDR-RCLRTFKGHRK----------------PVRDASFNNCGTSFLSASFDRFLKLWDTE 288 (503)
T ss_pred eeeEEEecCCCceEEEEEEecCc-ceehhhhcchh----------------hhhhhhccccCCeeeeeecceeeeeeccc
Confidence 67788887777788777654311 45666666421 123577888888888877777788888
Q ss_pred CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 011333 171 DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD 232 (488)
Q Consensus 171 ~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~ 232 (488)
.|.+..-.-. + .-|++|-+-+++.+++++-..+.+|+.+|.....
T Consensus 289 TG~~~~~f~~--~---------------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k 333 (503)
T KOG0282|consen 289 TGQVLSRFHL--D---------------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK 333 (503)
T ss_pred cceEEEEEec--C---------------CCceeeecCCCCCcEEEEecCCCcEEEEeccchH
Confidence 3444332211 1 1466777444445999999999999999987543
No 161
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.41 E-value=1.3e+02 Score=32.42 Aligned_cols=86 Identities=8% Similarity=-0.066 Sum_probs=55.0
Q ss_pred cceEEEcCC--CcEEEEECCCCEEEEEc--CCC--cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC
Q 011333 145 PKGLTVDDR--GNIYIADTMNMAIRKIS--DSG--VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR 218 (488)
Q Consensus 145 P~GIAvD~d--G~LYVAD~~N~rIrkid--~gg--VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~ 218 (488)
+.+|.|-+. -.-|++=+..|.+|.|| .++ |..+.-.... -.+++++++...||++|+
T Consensus 205 ~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~-----------------is~~~l~p~gn~Iy~gn~ 267 (412)
T KOG3881|consen 205 ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENP-----------------ISSTGLTPSGNFIYTGNT 267 (412)
T ss_pred eccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCc-----------------ceeeeecCCCcEEEEecc
Confidence 446666654 56788888889999999 233 5555433211 145565566667888887
Q ss_pred CCCeEEEEEcCCC---ceEEeccCCCcceEEEE
Q 011333 219 GNRAIREIQLHFD---DCAYQYGSSFPLGIAVL 248 (488)
Q Consensus 219 gN~rIrkI~~~g~---~~~~~~~~g~P~GIav~ 248 (488)
.+.+-.||..+. .|.+....|.+.+|-..
T Consensus 268 -~g~l~~FD~r~~kl~g~~~kg~tGsirsih~h 299 (412)
T KOG3881|consen 268 -KGQLAKFDLRGGKLLGCGLKGITGSIRSIHCH 299 (412)
T ss_pred -cchhheecccCceeeccccCCccCCcceEEEc
Confidence 477888988863 44455555666666544
No 162
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=37.19 E-value=5e+02 Score=27.22 Aligned_cols=78 Identities=13% Similarity=0.168 Sum_probs=51.1
Q ss_pred eEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCCE
Q 011333 86 YSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMA 165 (488)
Q Consensus 86 ~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~r 165 (488)
..|.+-|+|.-|++-+.+...+.+|.... .++.++.... - ...-+++++...|+|.+|-+....
T Consensus 233 Nsv~ffP~G~afatGSDD~tcRlyDlRaD--~~~a~ys~~~-~-------------~~gitSv~FS~SGRlLfagy~d~~ 296 (343)
T KOG0286|consen 233 NSVRFFPSGDAFATGSDDATCRLYDLRAD--QELAVYSHDS-I-------------ICGITSVAFSKSGRLLFAGYDDFT 296 (343)
T ss_pred ceEEEccCCCeeeecCCCceeEEEeecCC--cEEeeeccCc-c-------------cCCceeEEEcccccEEEeeecCCc
Confidence 45677788888888777777777776532 2344443221 1 223468999999999998777777
Q ss_pred EEEEc--CCC-cEEEeC
Q 011333 166 IRKIS--DSG-VTTIAG 179 (488)
Q Consensus 166 Irkid--~gg-VttIaG 179 (488)
+.+.| .+. +.++.|
T Consensus 297 c~vWDtlk~e~vg~L~G 313 (343)
T KOG0286|consen 297 CNVWDTLKGERVGVLAG 313 (343)
T ss_pred eeEeeccccceEEEeec
Confidence 77777 454 455554
No 163
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=36.42 E-value=39 Score=21.39 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=13.4
Q ss_pred CcceEEEcCCCcEEEEE
Q 011333 144 HPKGLTVDDRGNIYIAD 160 (488)
Q Consensus 144 ~P~GIAvD~dG~LYVAD 160 (488)
.-..|+.|++|+|||+-
T Consensus 6 ~I~~i~~D~~G~lWigT 22 (24)
T PF07494_consen 6 NIYSIYEDSDGNLWIGT 22 (24)
T ss_dssp CEEEEEE-TTSCEEEEE
T ss_pred eEEEEEEcCCcCEEEEe
Confidence 45679999999999985
No 164
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=36.18 E-value=4.2e+02 Score=30.86 Aligned_cols=116 Identities=14% Similarity=0.045 Sum_probs=68.4
Q ss_pred CceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECC
Q 011333 84 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM 162 (488)
Q Consensus 84 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~ 162 (488)
.-+.|++.| |.+.||+-.-.++|+.++-... ++.....- + ..-+.||+-|+|...|.=+.
T Consensus 411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~---~Vv~W~Dl---------------~-~lITAvcy~PdGk~avIGt~ 471 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDK---KVVDWNDL---------------R-DLITAVCYSPDGKGAVIGTF 471 (712)
T ss_pred eeEEEEecccCCCcEeecccccceEEeecCcC---eeEeehhh---------------h-hhheeEEeccCCceEEEEEe
Confidence 446778888 6778888888888888876531 22222111 0 23567899999999898889
Q ss_pred CCEEEEEcCCCcEEEeC----CccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcC
Q 011333 163 NMAIRKISDSGVTTIAG----GKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLH 229 (488)
Q Consensus 163 N~rIrkid~ggVttIaG----g~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gN~rIrkI~~~ 229 (488)
++.++.|+..+...... ..... .++=..-+|+-+.+.+- .|+|+ +...|||.++..
T Consensus 472 ~G~C~fY~t~~lk~~~~~~I~~~~~K----------k~~~~rITG~Q~~p~~~~~vLVT-SnDSrIRI~d~~ 532 (712)
T KOG0283|consen 472 NGYCRFYDTEGLKLVSDFHIRLHNKK----------KKQGKRITGLQFFPGDPDEVLVT-SNDSRIRIYDGR 532 (712)
T ss_pred ccEEEEEEccCCeEEEeeeEeeccCc----------cccCceeeeeEecCCCCCeEEEe-cCCCceEEEecc
Confidence 99999998433211111 11000 01111234555443332 46665 446799999983
No 165
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=36.14 E-value=5.3e+02 Score=31.00 Aligned_cols=73 Identities=18% Similarity=0.286 Sum_probs=52.6
Q ss_pred ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333 85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM 164 (488)
Q Consensus 85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~ 164 (488)
-..|+.+|++.++++=...+.|..++..+ ...+.++-|. -..+.|+++||-|..+.+-..-+
T Consensus 132 V~Dv~Wsp~~~~lvS~s~DnsViiwn~~t--F~~~~vl~~H----------------~s~VKGvs~DP~Gky~ASqsdDr 193 (942)
T KOG0973|consen 132 VLDVNWSPDDSLLVSVSLDNSVIIWNAKT--FELLKVLRGH----------------QSLVKGVSWDPIGKYFASQSDDR 193 (942)
T ss_pred cceeccCCCccEEEEecccceEEEEcccc--ceeeeeeecc----------------cccccceEECCccCeeeeecCCc
Confidence 35677789999999888888999998764 1344444333 34588999999999888877777
Q ss_pred EEEEEc--CCCcE
Q 011333 165 AIRKIS--DSGVT 175 (488)
Q Consensus 165 rIrkid--~ggVt 175 (488)
.|..+. +.++.
T Consensus 194 tikvwrt~dw~i~ 206 (942)
T KOG0973|consen 194 TLKVWRTSDWGIE 206 (942)
T ss_pred eEEEEEcccceee
Confidence 776666 54443
No 166
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=35.46 E-value=5.2e+02 Score=26.73 Aligned_cols=108 Identities=17% Similarity=0.153 Sum_probs=60.3
Q ss_pred ccCCcceEEEcC--C-Cc--EEEEECCCCEEEEEc--C---CCcEEEeCCccCCCCCCCCCCcccccCC-CCCeeEEECC
Q 011333 141 RMNHPKGLTVDD--R-GN--IYIADTMNMAIRKIS--D---SGVTTIAGGKWGRGGGHVDGPSEDAKFS-NDFDVVYIGS 209 (488)
Q Consensus 141 ~Ln~P~GIAvD~--d-G~--LYVAD~~N~rIrkid--~---ggVttIaGg~~g~~~g~~dG~~~~a~f~-~P~gIa~vd~ 209 (488)
.+..|-|+|.-. . |. +||.+.. +-|+.+. + |.|.+-+-. +-+|. .-.|++..|.
T Consensus 151 ~~s~~YGl~lyrs~ktgd~yvfV~~~q-G~~~Qy~l~d~gnGkv~~k~vR--------------~fk~~tQTEG~VaDdE 215 (364)
T COG4247 151 SSSSAYGLALYRSPKTGDYYVFVNRRQ-GDIAQYKLIDQGNGKVGTKLVR--------------QFKIPTQTEGMVADDE 215 (364)
T ss_pred CcccceeeEEEecCCcCcEEEEEecCC-CceeEEEEEecCCceEcceeeE--------------eeecCCcccceeeccc
Confidence 467788888764 2 55 4455543 5566554 2 223221110 01111 1235555788
Q ss_pred CCeEEEEECCCCeEEEEEcCCCceEE----eccC------CCcceEEEEecCCceEEEEEEEEec
Q 011333 210 SCSLLVIDRGNRAIREIQLHFDDCAY----QYGS------SFPLGIAVLLAAGFFGYMLALLQRR 264 (488)
Q Consensus 210 ~G~LYVaD~gN~rIrkI~~~g~~~~~----~~~~------g~P~GIav~~g~g~~Gy~~a~l~~~ 264 (488)
.|.|||+.. +-.|||+..+...... .... .--.|+.+-.+-..-||.+++-|..
T Consensus 216 tG~LYIaeE-dvaiWK~~Aep~~G~~g~~idr~~d~~~LtdDvEGltiYy~pnGkGYL~aSSQGn 279 (364)
T COG4247 216 TGFLYIAEE-DVAIWKYEAEPNRGNTGRLIDRIKDLSYLTDDVEGLTIYYGPNGKGYLLASSQGN 279 (364)
T ss_pred cceEEEeec-cceeeecccCCCCCCccchhhhhcCchhhcccccccEEEEcCCCcEEEEEecCCC
Confidence 999999985 6889999876422211 1111 1224566666667788888876654
No 167
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=35.17 E-value=4.7e+02 Score=31.16 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=41.4
Q ss_pred CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcc-eEEEcCCCcEEEEECCCCEEEEEc-
Q 011333 93 GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPK-GLTVDDRGNIYIADTMNMAIRKIS- 170 (488)
Q Consensus 93 dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~-GIAvD~dG~LYVAD~~N~rIrkid- 170 (488)
+++.+++-+.++.|.++....+. ..+ ..++|--|- .++|+.+|+..++=...-.|..++
T Consensus 65 ~s~~f~~~s~~~tv~~y~fps~~---~~~----------------iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~ 125 (933)
T KOG1274|consen 65 YSNHFLTGSEQNTVLRYKFPSGE---EDT----------------ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNL 125 (933)
T ss_pred cccceEEeeccceEEEeeCCCCC---ccc----------------eeeeeeccceEEEEecCCcEEEeecCceeEEEEec
Confidence 44566676777888888765311 111 124455554 789999998888766666666666
Q ss_pred -CCC-cEEEeC
Q 011333 171 -DSG-VTTIAG 179 (488)
Q Consensus 171 -~gg-VttIaG 179 (488)
+.. +.++-|
T Consensus 126 ~D~s~~~~lrg 136 (933)
T KOG1274|consen 126 DDSSQEKVLRG 136 (933)
T ss_pred cccchheeecc
Confidence 444 444444
No 168
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=34.92 E-value=1.9e+02 Score=31.73 Aligned_cols=43 Identities=16% Similarity=0.325 Sum_probs=30.4
Q ss_pred CCceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCC
Q 011333 83 IEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEG 128 (488)
Q Consensus 83 ~~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G 128 (488)
.+-.+|..++ ++.|+|+-...+.|.+|+..+ +.+..++|...+
T Consensus 271 ~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t---~~i~Wilg~~~~ 314 (477)
T PF05935_consen 271 LHINSIDYDPSDDSIIVSSRHQSAVIKIDYRT---GKIKWILGPPGG 314 (477)
T ss_dssp --EEEEEEETTTTEEEEEETTT-EEEEEE-TT---S-EEEEES-STT
T ss_pred cccCccEEeCCCCeEEEEcCcceEEEEEECCC---CcEEEEeCCCCC
Confidence 4667888888 788999999899999999665 578888887533
No 169
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=34.52 E-value=2.8e+02 Score=29.35 Aligned_cols=93 Identities=11% Similarity=0.102 Sum_probs=0.0
Q ss_pred EEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCCEEE
Q 011333 88 VEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIR 167 (488)
Q Consensus 88 IaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~rIr 167 (488)
+.+++.|.++.+-..|++|+.+|..+ -.+..+.+.. ..--+.||..++|+..++-+....|.
T Consensus 29 ~~Fs~~G~~lAvGc~nG~vvI~D~~T---~~iar~lsaH---------------~~pi~sl~WS~dgr~LltsS~D~si~ 90 (405)
T KOG1273|consen 29 CQFSRWGDYLAVGCANGRVVIYDFDT---FRIARMLSAH---------------VRPITSLCWSRDGRKLLTSSRDWSIK 90 (405)
T ss_pred EEeccCcceeeeeccCCcEEEEEccc---cchhhhhhcc---------------ccceeEEEecCCCCEeeeecCCceeE
Q ss_pred EEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCC-CeeEEECCCCeEEEE
Q 011333 168 KIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSND-FDVVYIGSSCSLLVI 216 (488)
Q Consensus 168 kid--~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P-~gIa~vd~~G~LYVa 216 (488)
.+| +|....-. +|++| ++..+.+.+.+..|+
T Consensus 91 lwDl~~gs~l~ri------------------rf~spv~~~q~hp~k~n~~va 124 (405)
T KOG1273|consen 91 LWDLLKGSPLKRI------------------RFDSPVWGAQWHPRKRNKCVA 124 (405)
T ss_pred EEeccCCCceeEE------------------EccCccceeeeccccCCeEEE
No 170
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=33.40 E-value=2.8e+02 Score=29.33 Aligned_cols=121 Identities=17% Similarity=0.183 Sum_probs=73.3
Q ss_pred eEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCCE
Q 011333 86 YSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMA 165 (488)
Q Consensus 86 ~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~r 165 (488)
..+.+.|...|+++.+..+.|..||..-. -+.. .+.-+.| -..-+.|.+.|.|+...+-+....
T Consensus 176 n~l~FHPre~ILiS~srD~tvKlFDfsK~-------saKr--A~K~~qd-------~~~vrsiSfHPsGefllvgTdHp~ 239 (430)
T KOG0640|consen 176 NDLDFHPRETILISGSRDNTVKLFDFSKT-------SAKR--AFKVFQD-------TEPVRSISFHPSGEFLLVGTDHPT 239 (430)
T ss_pred cceeecchhheEEeccCCCeEEEEecccH-------HHHH--HHHHhhc-------cceeeeEeecCCCceEEEecCCCc
Confidence 45667777778887777777777775410 0000 0000000 112357999999998887777788
Q ss_pred EEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 011333 166 IRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA 234 (488)
Q Consensus 166 Irkid~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~ 234 (488)
+|.||-++...++... .+++ .-..-..|-| .+.|+|||+-+..+.|+.++--.+.|.
T Consensus 240 ~rlYdv~T~Qcfvsan------Pd~q-----ht~ai~~V~Y-s~t~~lYvTaSkDG~IklwDGVS~rCv 296 (430)
T KOG0640|consen 240 LRLYDVNTYQCFVSAN------PDDQ-----HTGAITQVRY-SSTGSLYVTASKDGAIKLWDGVSNRCV 296 (430)
T ss_pred eeEEeccceeEeeecC------cccc-----cccceeEEEe-cCCccEEEEeccCCcEEeeccccHHHH
Confidence 8888855544443211 1111 1112356664 678999999999999999986555554
No 171
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=33.17 E-value=5.8e+02 Score=27.72 Aligned_cols=30 Identities=13% Similarity=0.092 Sum_probs=25.5
Q ss_pred CceEEEEccCCcEEEEECCCCeEEEEeCCC
Q 011333 84 EPYSVEVLPGGELLILDSANSNLYRISSSL 113 (488)
Q Consensus 84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g 113 (488)
--..|+..|||....+-.-++.|+.+++..
T Consensus 159 WVlcvawsPDgk~iASG~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 159 WVLCVAWSPDGKKIASGSKDGSIRLWDPKT 188 (480)
T ss_pred EEEEEEECCCcchhhccccCCeEEEecCCC
Confidence 345678889999999999999999999874
No 172
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=32.84 E-value=6.6e+02 Score=30.04 Aligned_cols=70 Identities=19% Similarity=0.292 Sum_probs=47.2
Q ss_pred eEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCCE
Q 011333 86 YSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMA 165 (488)
Q Consensus 86 ~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~r 165 (488)
..++|+.+|+..++-...-.|..++...+ +....+-|. +++ -.+|.+|++|++..+-..++.
T Consensus 100 r~~~v~g~g~~iaagsdD~~vK~~~~~D~--s~~~~lrgh--------~ap--------Vl~l~~~p~~~fLAvss~dG~ 161 (933)
T KOG1274|consen 100 RDLAVSGSGKMIAAGSDDTAVKLLNLDDS--SQEKVLRGH--------DAP--------VLQLSYDPKGNFLAVSSCDGK 161 (933)
T ss_pred eEEEEecCCcEEEeecCceeEEEEecccc--chheeeccc--------CCc--------eeeeeEcCCCCEEEEEecCce
Confidence 56778888887777666656666665532 233444332 221 247999999998888888999
Q ss_pred EEEEc-CCC
Q 011333 166 IRKIS-DSG 173 (488)
Q Consensus 166 Irkid-~gg 173 (488)
|+.++ ..+
T Consensus 162 v~iw~~~~~ 170 (933)
T KOG1274|consen 162 VQIWDLQDG 170 (933)
T ss_pred EEEEEcccc
Confidence 99998 443
No 173
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=31.92 E-value=6.5e+02 Score=27.86 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=22.5
Q ss_pred ceEEEEccCCcEEEEECCCCeEEEEeCC
Q 011333 85 PYSVEVLPGGELLILDSANSNLYRISSS 112 (488)
Q Consensus 85 P~GIaVd~dG~LYVaD~~n~rI~kid~~ 112 (488)
-+++.+-.||.|+.|--..+.|..||.+
T Consensus 71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAGDESGHVKVFDMK 98 (487)
T ss_pred eeEEEeecCCeEEEccCCcCcEEEeccc
Confidence 3556676799999997788999999955
No 174
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=30.15 E-value=8.2e+02 Score=27.41 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=11.4
Q ss_pred eEEEEECCCCeEEEEEc
Q 011333 212 SLLVIDRGNRAIREIQL 228 (488)
Q Consensus 212 ~LYVaD~gN~rIrkI~~ 228 (488)
+|-+.|..++.|..+..
T Consensus 470 ~Iklydm~~~Kiy~vTT 486 (668)
T COG4946 470 SIKLYDMDGGKIYDVTT 486 (668)
T ss_pred eEEEEecCCCeEEEecC
Confidence 56667777777776654
No 175
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=29.81 E-value=5.5e+02 Score=26.26 Aligned_cols=107 Identities=7% Similarity=0.115 Sum_probs=62.5
Q ss_pred EEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCCEEEE
Q 011333 89 EVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRK 168 (488)
Q Consensus 89 aVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~rIrk 168 (488)
++..|..=+.+-.+...|+.+|-++++ .++.+-| + +..-+-|.+..+-.+.++-.....||.
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~TGk--v~Rr~rg-------H---------~aqVNtV~fNeesSVv~SgsfD~s~r~ 127 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNTGK--VDRRFRG-------H---------LAQVNTVRFNEESSVVASGSFDSSVRL 127 (307)
T ss_pred cccccccccccCCCCceEEEEEcccCe--eeeeccc-------c---------cceeeEEEecCcceEEEeccccceeEE
Confidence 343444444444455677777777532 1222222 2 223456777777778888777888888
Q ss_pred Ec--CCC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 011333 169 IS--DSG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC 233 (488)
Q Consensus 169 id--~gg---VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~ 233 (488)
+| ... |.++.... -+|.-++-.+..+|+-+-.+++|.+++.....
T Consensus 128 wDCRS~s~ePiQildea~--------------------D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l 177 (307)
T KOG0316|consen 128 WDCRSRSFEPIQILDEAK--------------------DGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTL 177 (307)
T ss_pred EEcccCCCCccchhhhhc--------------------CceeEEEecccEEEeeccCCcEEEEEeeccee
Confidence 88 333 33332211 11222455678889988889999998875433
No 176
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=29.75 E-value=3.2e+02 Score=23.34 Aligned_cols=55 Identities=16% Similarity=0.282 Sum_probs=32.9
Q ss_pred cceEEEcCCCcEEEEECCCCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEE
Q 011333 145 PKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIR 224 (488)
Q Consensus 145 P~GIAvD~dG~LYVAD~~N~rIrkid~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIr 224 (488)
+.-+.++.+|+|++.|..+..|..=. .. .+ ..+..+. +.++|+|.+-|..+..|+
T Consensus 55 ~~~l~l~~dGnLvl~~~~g~~vW~S~--t~----~~------------------~~~~~~~-L~ddGnlvl~~~~~~~~W 109 (114)
T smart00108 55 SCTLTLQSDGNLVLYDGDGRVVWSSN--TT----GA------------------NGNYVLV-LLDDGNLVIYDSDGNFLW 109 (114)
T ss_pred CEEEEEeCCCCEEEEeCCCCEEEEec--cc----CC------------------CCceEEE-EeCCCCEEEECCCCCEEe
Confidence 45688889999999987554432211 00 00 1223344 778899988887554443
No 177
>PRK00178 tolB translocation protein TolB; Provisional
Probab=29.63 E-value=6.8e+02 Score=26.29 Aligned_cols=65 Identities=12% Similarity=0.142 Sum_probs=33.3
Q ss_pred EEEEccCCc-E-EEEEC-CCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEE-EEC
Q 011333 87 SVEVLPGGE-L-LILDS-ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYI-ADT 161 (488)
Q Consensus 87 GIaVd~dG~-L-YVaD~-~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYV-AD~ 161 (488)
..+++|||+ | |+++. ++..|++++.++ +....+... .| .-...++.+||+ |++ ++.
T Consensus 203 ~p~wSpDG~~la~~s~~~~~~~l~~~~l~~---g~~~~l~~~----~g------------~~~~~~~SpDG~~la~~~~~ 263 (430)
T PRK00178 203 SPRWSPDGKRIAYVSFEQKRPRIFVQNLDT---GRREQITNF----EG------------LNGAPAWSPDGSKLAFVLSK 263 (430)
T ss_pred eeeECCCCCEEEEEEcCCCCCEEEEEECCC---CCEEEccCC----CC------------CcCCeEECCCCCEEEEEEcc
Confidence 445667776 4 44432 335677777765 233333211 01 012367778885 443 332
Q ss_pred -CCCEEEEEc
Q 011333 162 -MNMAIRKIS 170 (488)
Q Consensus 162 -~N~rIrkid 170 (488)
++..|..++
T Consensus 264 ~g~~~Iy~~d 273 (430)
T PRK00178 264 DGNPEIYVMD 273 (430)
T ss_pred CCCceEEEEE
Confidence 345788887
No 178
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=29.34 E-value=1.1e+02 Score=20.38 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=21.7
Q ss_pred CceEEEEccCCcEEEEECCCCeEEEEe
Q 011333 84 EPYSVEVLPGGELLILDSANSNLYRIS 110 (488)
Q Consensus 84 ~P~GIaVd~dG~LYVaD~~n~rI~kid 110 (488)
.-..|++.+++.++++-..++.|+.++
T Consensus 13 ~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 13 SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred cEEEEEEecccccceeeCCCCEEEEEC
Confidence 457889999999888877778888764
No 179
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.94 E-value=6.5e+02 Score=26.49 Aligned_cols=60 Identities=8% Similarity=-0.097 Sum_probs=30.9
Q ss_pred CCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEEeccCCCcceEEEEecCCceEEEEEEEEec
Q 011333 201 DFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFPLGIAVLLAAGFFGYMLALLQRR 264 (488)
Q Consensus 201 P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~~~~~g~P~GIav~~g~g~~Gy~~a~l~~~ 264 (488)
--+||+-++++.+-++-...|+...++.............--.|++.. ..|+..+.-|.+
T Consensus 282 igsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~daaGva~~----~~gf~vssg~G~ 341 (366)
T COG3490 282 IGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPDAAGVAAA----KGGFAVSSGQGR 341 (366)
T ss_pred hhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccccccceec----cCceEEecCCce
Confidence 345665555666666666666666666665444433333223344444 335555554444
No 180
>PRK04043 tolB translocation protein TolB; Provisional
Probab=28.61 E-value=7.6e+02 Score=26.50 Aligned_cols=25 Identities=8% Similarity=0.089 Sum_probs=14.8
Q ss_pred EEccCCc--EEEEECC--CCeEEEEeCCC
Q 011333 89 EVLPGGE--LLILDSA--NSNLYRISSSL 113 (488)
Q Consensus 89 aVd~dG~--LYVaD~~--n~rI~kid~~g 113 (488)
...|||+ +|++... +..|++++..+
T Consensus 194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t 222 (419)
T PRK04043 194 KWANKEQTAFYYTSYGERKPTLYKYNLYT 222 (419)
T ss_pred EECCCCCcEEEEEEccCCCCEEEEEECCC
Confidence 4566764 5554332 46777777765
No 181
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=27.77 E-value=2.7e+02 Score=29.66 Aligned_cols=80 Identities=21% Similarity=0.394 Sum_probs=50.2
Q ss_pred CCCceEEEEccCCcEEEEECCCC-----eEEEEeCCCCcccccEEEecCCC-CccccCCCcccccccCCcceEEEcCCCc
Q 011333 82 GIEPYSVEVLPGGELLILDSANS-----NLYRISSSLSLYSRPKLVAGSAE-GYSGHVDGKPREARMNHPKGLTVDDRGN 155 (488)
Q Consensus 82 l~~P~GIaVd~dG~LYVaD~~n~-----rI~kid~~g~~~g~i~tvaG~~~-G~~G~~dG~a~~a~Ln~P~GIAvD~dG~ 155 (488)
+..|+.++--.+|.+|++.-..+ +|+.+...+ ....+++..-- ..+| ...+-..-..+.+|.+|+
T Consensus 182 GTf~yNmgAl~nGH~Y~asLSG~~~SPLKiY~w~tPt---s~PevIa~inV~~I~g------Ag~RhGDn~S~nlD~nGn 252 (442)
T PF15416_consen 182 GTFSYNMGALVNGHSYLASLSGGKASPLKIYYWETPT---SAPEVIADINVGDIPG------AGNRHGDNFSLNLDENGN 252 (442)
T ss_pred cccccchhhhcCCeEEEEeccCCCCCceEEEEecCCC---CCceEEEeeeeccCcc------cccccCcceeEEeccCCc
Confidence 44666676667999999975432 688887665 35566654310 1111 111222234678888776
Q ss_pred --EEEEECCCCEEEEEc
Q 011333 156 --IYIADTMNMAIRKIS 170 (488)
Q Consensus 156 --LYVAD~~N~rIrkid 170 (488)
|||.|.....|.+++
T Consensus 253 GyiFFgdnaat~ilR~~ 269 (442)
T PF15416_consen 253 GYIFFGDNAATNILRFT 269 (442)
T ss_pred eEEEecCCccceEEEEE
Confidence 889998878888887
No 182
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=27.48 E-value=8e+02 Score=26.40 Aligned_cols=69 Identities=12% Similarity=0.198 Sum_probs=46.6
Q ss_pred ceEEEcCCCcEEEEECCCCE-EEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCC
Q 011333 146 KGLTVDDRGNIYIADTMNMA-IRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNR 221 (488)
Q Consensus 146 ~GIAvD~dG~LYVAD~~N~r-Irkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~ 221 (488)
..||++++|.+..+-+..+. ||+|. +|. +..+--|. ...+-+.|+ +++++.++.+-..+.
T Consensus 177 Aalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~---------------~~~~IySL~-Fs~ds~~L~~sS~Te 240 (391)
T KOG2110|consen 177 AALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT---------------YPVSIYSLS-FSPDSQFLAASSNTE 240 (391)
T ss_pred eEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc---------------eeeEEEEEE-ECCCCCeEEEecCCC
Confidence 46999999999988777665 55666 343 33332221 122446788 678888888888888
Q ss_pred eEEEEEcCC
Q 011333 222 AIREIQLHF 230 (488)
Q Consensus 222 rIrkI~~~g 230 (488)
.|..|.++.
T Consensus 241 TVHiFKL~~ 249 (391)
T KOG2110|consen 241 TVHIFKLEK 249 (391)
T ss_pred eEEEEEecc
Confidence 888888764
No 183
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=26.28 E-value=8.1e+02 Score=26.08 Aligned_cols=137 Identities=12% Similarity=0.117 Sum_probs=68.9
Q ss_pred cceEEEcCCCcEEEEECCCCEEEEEc-CC-C-cEEEeCCccCCCCCCCCCCccccc--CCCCCeeEEECCCCeEEEEECC
Q 011333 145 PKGLTVDDRGNIYIADTMNMAIRKIS-DS-G-VTTIAGGKWGRGGGHVDGPSEDAK--FSNDFDVVYIGSSCSLLVIDRG 219 (488)
Q Consensus 145 P~GIAvD~dG~LYVAD~~N~rIrkid-~g-g-VttIaGg~~g~~~g~~dG~~~~a~--f~~P~gIa~vd~~G~LYVaD~g 219 (488)
-+...+.++|+-.++-+..+.|++.+ .. . +.|+-..+. |-+..... -.+|-.+.+-..++.+||.+..
T Consensus 351 vn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~-------d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 351 VNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGT-------DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ 423 (508)
T ss_pred ccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCC-------cccceeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence 34456667777666666666666666 22 1 344332211 11111111 1335555545556678887776
Q ss_pred CCeEEEEEcCCC-ceEEeccCCCcceEE-EEecCCceEEEEEEEEeccceEEeccCCCCCcCCCCCCCCCCCCC
Q 011333 220 NRAIREIQLHFD-DCAYQYGSSFPLGIA-VLLAAGFFGYMLALLQRRVGTIVSSQNDHGTVNTSNSASPYQKPL 291 (488)
Q Consensus 220 N~rIrkI~~~g~-~~~~~~~~g~P~GIa-v~~g~g~~Gy~~a~l~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~ 291 (488)
...|+.++.... .+......-.|.|=- -..|-...-|.|..+.+.+-....-+... .-.+...|.|+.+
T Consensus 424 GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkd---vIGl~HHPHqNll 494 (508)
T KOG0275|consen 424 GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKD---VIGLTHHPHQNLL 494 (508)
T ss_pred ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccc---ccccccCcccchh
Confidence 667777765431 222222223455522 22233355677776666654444333332 4456777888865
No 184
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=26.19 E-value=1.2e+02 Score=31.12 Aligned_cols=71 Identities=18% Similarity=0.274 Sum_probs=45.1
Q ss_pred cCCc--ceEEEcCCCcEEEEECCCCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC
Q 011333 142 MNHP--KGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG 219 (488)
Q Consensus 142 Ln~P--~GIAvD~dG~LYVAD~~N~rIrkid~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~g 219 (488)
+.+| .|+.+-+|+.|+.+-.+.||||+|+-.....+|-.+.-. ..-++|| ..++..|.-+-..
T Consensus 249 lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHs--------------agvn~vA-fspd~~lmAaask 313 (323)
T KOG0322|consen 249 LKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHS--------------AGVNAVA-FSPDCELMAAASK 313 (323)
T ss_pred ecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhh--------------cceeEEE-eCCCCchhhhccC
Confidence 4445 388899999999999999999999932222222111100 1236778 4666777777666
Q ss_pred CCeEEEEE
Q 011333 220 NRAIREIQ 227 (488)
Q Consensus 220 N~rIrkI~ 227 (488)
..+|.-++
T Consensus 314 D~rISLWk 321 (323)
T KOG0322|consen 314 DARISLWK 321 (323)
T ss_pred CceEEeee
Confidence 66765544
No 185
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=25.89 E-value=1.6e+02 Score=30.48 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=16.7
Q ss_pred EEeecCCCCCCCceEEEEccCCcE-EEEEC-CCCeEEEEeC
Q 011333 73 ETVFDGSKLGIEPYSVEVLPGGEL-LILDS-ANSNLYRISS 111 (488)
Q Consensus 73 ~~~~~G~~~l~~P~GIaVd~dG~L-YVaD~-~n~rI~kid~ 111 (488)
.....++.+++.|... .+..+| .+++. ++.|.+.|+.
T Consensus 77 ~v~~~~N~lfIKP~~~--~~~tnl~VvT~k~~~kRtY~F~L 115 (292)
T PRK13861 77 AALPRGNYLFFKASKV--LPPQPVIVLTASDAGMRRYVFSI 115 (292)
T ss_pred EEecCCcEEEEEECCC--CCCccEEEEEcCCCCcEEEEEEE
Confidence 3334444555555432 223333 33431 2457777765
No 186
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.18 E-value=8e+02 Score=25.62 Aligned_cols=157 Identities=12% Similarity=0.093 Sum_probs=78.5
Q ss_pred CceeEEeecCCCCCCCceEEEEccCC-cEEEEECCC------CeEEEEeCCCCcccccEEEecCCCCccccCCCccc---
Q 011333 69 GYTVETVFDGSKLGIEPYSVEVLPGG-ELLILDSAN------SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPR--- 138 (488)
Q Consensus 69 G~~~~~~~~G~~~l~~P~GIaVd~dG-~LYVaD~~n------~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~--- 138 (488)
+|.-...+. ..++.|+.|.+.+|| .|.|++.+= +| .|++.++.. -.+ +++... +|...
T Consensus 87 ~~~ri~E~~--s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR-~kLNl~tM~-psL-~~ld~~-------sG~ll~q~ 154 (305)
T PF07433_consen 87 GYRRIGEFP--SHGIGPHELLLMPDGETLVVANGGIETHPDSGR-AKLNLDTMQ-PSL-VYLDAR-------SGALLEQV 154 (305)
T ss_pred CcEEEeEec--CCCcChhhEEEcCCCCEEEEEcCCCccCcccCc-eecChhhcC-Cce-EEEecC-------CCceeeee
Confidence 444444443 235689999999999 688887541 11 122322211 011 122110 11100
Q ss_pred ----ccccCCcceEEEcCCCcEEEEECCCC-------EEEEEcCCC-cEEEeCCccCCCCCCCCCCcccccC-CCCCeeE
Q 011333 139 ----EARMNHPKGLTVDDRGNIYIADTMNM-------AIRKISDSG-VTTIAGGKWGRGGGHVDGPSEDAKF-SNDFDVV 205 (488)
Q Consensus 139 ----~a~Ln~P~GIAvD~dG~LYVAD~~N~-------rIrkid~gg-VttIaGg~~g~~~g~~dG~~~~a~f-~~P~gIa 205 (488)
.-.-.+-+-|+++.+|.++++-.+.. -|-..+.++ +..+... . ..-..| ++--+||
T Consensus 155 ~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p-~----------~~~~~l~~Y~gSIa 223 (305)
T PF07433_consen 155 ELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAP-E----------EQWRRLNGYIGSIA 223 (305)
T ss_pred ecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCC-h----------HHHHhhCCceEEEE
Confidence 11223566799999999999864422 122222233 2221110 0 000112 2345788
Q ss_pred EECCCC-eEEEEECCCCeEEEEEcCCCceEEeccCCCcceEEEEe
Q 011333 206 YIGSSC-SLLVIDRGNRAIREIQLHFDDCAYQYGSSFPLGIAVLL 249 (488)
Q Consensus 206 ~vd~~G-~LYVaD~gN~rIrkI~~~g~~~~~~~~~g~P~GIav~~ 249 (488)
++.+| .+.++-...+++..++.....+.......--+|++...
T Consensus 224 -~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~ 267 (305)
T PF07433_consen 224 -ADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTD 267 (305)
T ss_pred -EeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecC
Confidence 45555 56677778889999877654444333333335555553
No 187
>PRK05137 tolB translocation protein TolB; Provisional
Probab=24.82 E-value=8.5e+02 Score=25.81 Aligned_cols=65 Identities=12% Similarity=0.220 Sum_probs=34.0
Q ss_pred EEEEccCCc-E-EEEE-CCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEE-EC
Q 011333 87 SVEVLPGGE-L-LILD-SANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA-DT 161 (488)
Q Consensus 87 GIaVd~dG~-L-YVaD-~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVA-D~ 161 (488)
..++.|||. | |+++ .+...|+.++..+ +....+... .| .-...++.+||. |+++ +.
T Consensus 206 ~p~wSpDG~~lay~s~~~g~~~i~~~dl~~---g~~~~l~~~----~g------------~~~~~~~SPDG~~la~~~~~ 266 (435)
T PRK05137 206 TPRFSPNRQEITYMSYANGRPRVYLLDLET---GQRELVGNF----PG------------MTFAPRFSPDGRKVVMSLSQ 266 (435)
T ss_pred eeEECCCCCEEEEEEecCCCCEEEEEECCC---CcEEEeecC----CC------------cccCcEECCCCCEEEEEEec
Confidence 345677876 3 4443 2346788888775 333333221 01 012356777775 4333 32
Q ss_pred -CCCEEEEEc
Q 011333 162 -MNMAIRKIS 170 (488)
Q Consensus 162 -~N~rIrkid 170 (488)
++..|..++
T Consensus 267 ~g~~~Iy~~d 276 (435)
T PRK05137 267 GGNTDIYTMD 276 (435)
T ss_pred CCCceEEEEE
Confidence 345677777
No 188
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=24.16 E-value=9.6e+02 Score=26.20 Aligned_cols=115 Identities=14% Similarity=0.218 Sum_probs=63.7
Q ss_pred eEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC--
Q 011333 86 YSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN-- 163 (488)
Q Consensus 86 ~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N-- 163 (488)
+.+.+..||.++++-.-..+|+++++..+ .+ +... .+..| .+.++-|.+ .+|.|+-+-...
T Consensus 177 ~S~sfn~dGs~l~TtckDKkvRv~dpr~~---~~--v~e~-~~heG----------~k~~Raifl-~~g~i~tTGfsr~s 239 (472)
T KOG0303|consen 177 YSMSFNRDGSLLCTTCKDKKVRVIDPRRG---TV--VSEG-VAHEG----------AKPARAIFL-ASGKIFTTGFSRMS 239 (472)
T ss_pred EEEEeccCCceeeeecccceeEEEcCCCC---cE--eeec-ccccC----------CCcceeEEe-ccCceeeecccccc
Confidence 46667789999999888899999999752 22 2211 12333 233445555 467755443321
Q ss_pred -CEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeE---EECCCCeEEEEECCCCeEEEEEcCCCc
Q 011333 164 -MAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVV---YIGSSCSLLVIDRGNRAIREIQLHFDD 232 (488)
Q Consensus 164 -~rIrkid~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa---~vd~~G~LYVaD~gN~rIrkI~~~g~~ 232 (488)
..|-..+...+..-. ....|..-+||. |.++.+-||++-.|...||-+....+.
T Consensus 240 eRq~aLwdp~nl~eP~---------------~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 240 ERQIALWDPNNLEEPI---------------ALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccceeccCcccccCcc---------------eeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 222222321111000 001122222332 455567789999999999998877654
No 189
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=23.60 E-value=3.4e+02 Score=23.57 Aligned_cols=55 Identities=25% Similarity=0.354 Sum_probs=32.6
Q ss_pred ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333 85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM 164 (488)
Q Consensus 85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~ 164 (488)
..-+.+..||+|.+.|..+ ++ .+..+. ..|. -..+.-+.+.++|+|.+-|..+.
T Consensus 20 ~~~L~l~~dGnLvl~~~~~-~~-iWss~~--------t~~~----------------~~~~~~~~L~~~GNlvl~d~~~~ 73 (114)
T PF01453_consen 20 NYTLILQSDGNLVLYDSNG-SV-IWSSNN--------TSGR----------------GNSGCYLVLQDDGNLVLYDSSGN 73 (114)
T ss_dssp TEEEEEETTSEEEEEETTT-EE-EEE--S---------TTS----------------S-SSEEEEEETTSEEEEEETTSE
T ss_pred cccceECCCCeEEEEcCCC-CE-EEEecc--------cCCc----------------cccCeEEEEeCCCCEEEEeecce
Confidence 3556788899999998764 33 333210 0000 01245578888999999996333
Q ss_pred E
Q 011333 165 A 165 (488)
Q Consensus 165 r 165 (488)
.
T Consensus 74 ~ 74 (114)
T PF01453_consen 74 V 74 (114)
T ss_dssp E
T ss_pred E
Confidence 3
No 190
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=22.76 E-value=4.1e+02 Score=22.79 Aligned_cols=55 Identities=15% Similarity=0.218 Sum_probs=32.3
Q ss_pred cceEEEcCCCcEEEEECCCCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEE
Q 011333 145 PKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIR 224 (488)
Q Consensus 145 P~GIAvD~dG~LYVAD~~N~rIrkid~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIr 224 (488)
+.-+.+..+|+|++.|..+..|..=...+ + ..+..+ .+.++|+|.+-|..+..|+
T Consensus 56 ~~~l~l~~dGnLvl~~~~g~~vW~S~~~~------~------------------~~~~~~-~L~ddGnlvl~~~~~~~~W 110 (116)
T cd00028 56 SCTLTLQSDGNLVIYDGSGTVVWSSNTTR------V------------------NGNYVL-VLLDDGNLVLYDSDGNFLW 110 (116)
T ss_pred CEEEEEecCCCeEEEcCCCcEEEEecccC------C------------------CCceEE-EEeCCCCEEEECCCCCEEE
Confidence 45688888999999987543332211000 0 012233 3678899988887554454
No 191
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=22.04 E-value=8.6e+02 Score=25.11 Aligned_cols=70 Identities=17% Similarity=0.304 Sum_probs=48.0
Q ss_pred CceEEE---EccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEE
Q 011333 84 EPYSVE---VLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD 160 (488)
Q Consensus 84 ~P~GIa---Vd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD 160 (488)
-|+.|. +.|+-++|||-.....++|+|.+++. .+..+ ..|+ +.--..|-+.|+|.+|.+-
T Consensus 223 ~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge--Ei~~~------nkgh---------~gpVhcVrFSPdGE~yAsG 285 (334)
T KOG0278|consen 223 MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE--EIGSY------NKGH---------FGPVHCVRFSPDGELYASG 285 (334)
T ss_pred CccccccccccCCCceEEecCcceEEEEEeccCCc--eeeec------ccCC---------CCceEEEEECCCCceeecc
Confidence 455444 56788999999888999999998632 22221 0122 2234578999999999988
Q ss_pred CCCCEEEEEc
Q 011333 161 TMNMAIRKIS 170 (488)
Q Consensus 161 ~~N~rIrkid 170 (488)
+..+.||...
T Consensus 286 SEDGTirlWQ 295 (334)
T KOG0278|consen 286 SEDGTIRLWQ 295 (334)
T ss_pred CCCceEEEEE
Confidence 7777777654
No 192
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=22.04 E-value=8.8e+02 Score=28.06 Aligned_cols=110 Identities=18% Similarity=0.190 Sum_probs=65.6
Q ss_pred ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333 85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM 164 (488)
Q Consensus 85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~ 164 (488)
-+.+|..+.|.++|+-..+..|+.+|+.+.. ++.-+.|. .| .-+.|-+++||+=.++-....
T Consensus 174 iYSLA~N~t~t~ivsGgtek~lr~wDprt~~--kimkLrGH-------Td---------NVr~ll~~dDGt~~ls~sSDg 235 (735)
T KOG0308|consen 174 IYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK--KIMKLRGH-------TD---------NVRVLLVNDDGTRLLSASSDG 235 (735)
T ss_pred eeeeecCCcceEEEecCcccceEEecccccc--ceeeeecc-------cc---------ceEEEEEcCCCCeEeecCCCc
Confidence 3567777888899988888899999987532 33333332 22 235688888998778777778
Q ss_pred EEEEEcCCC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC
Q 011333 165 AIRKISDSG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN 220 (488)
Q Consensus 165 rIrkid~gg---VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN 220 (488)
.|+..+-|. +.|+.--+.+... ...+..|. .+-.-+.+|+||.+|-.|
T Consensus 236 tIrlWdLgqQrCl~T~~vH~e~VWa-----L~~~~sf~---~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 236 TIRLWDLGQQRCLATYIVHKEGVWA-----LQSSPSFT---HVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred eEEeeeccccceeeeEEeccCceEE-----EeeCCCcc---eEEecCCCCcEEecccCC
Confidence 888888332 4454432211100 00111111 122235677888888766
No 193
>PRK04922 tolB translocation protein TolB; Provisional
Probab=21.80 E-value=9.7e+02 Score=25.39 Aligned_cols=64 Identities=19% Similarity=0.220 Sum_probs=33.4
Q ss_pred EEEccCCc-EEEEEC--CCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEE-EC-
Q 011333 88 VEVLPGGE-LLILDS--ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA-DT- 161 (488)
Q Consensus 88 IaVd~dG~-LYVaD~--~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVA-D~- 161 (488)
.+++|||+ |+++.. +...|++++..+ +....+... .|. -...++++||. |+++ +.
T Consensus 209 p~wSpDg~~la~~s~~~~~~~l~~~dl~~---g~~~~l~~~----~g~------------~~~~~~SpDG~~l~~~~s~~ 269 (433)
T PRK04922 209 PAWSPDGKKLAYVSFERGRSAIYVQDLAT---GQRELVASF----RGI------------NGAPSFSPDGRRLALTLSRD 269 (433)
T ss_pred ccCCCCCCEEEEEecCCCCcEEEEEECCC---CCEEEeccC----CCC------------ccCceECCCCCEEEEEEeCC
Confidence 34567775 444332 335677777765 233333221 110 12467888885 5443 33
Q ss_pred CCCEEEEEc
Q 011333 162 MNMAIRKIS 170 (488)
Q Consensus 162 ~N~rIrkid 170 (488)
++..|+.++
T Consensus 270 g~~~Iy~~d 278 (433)
T PRK04922 270 GNPEIYVMD 278 (433)
T ss_pred CCceEEEEE
Confidence 345788887
No 194
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=21.37 E-value=9.9e+02 Score=25.50 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=21.4
Q ss_pred CceEEEEccCCcEEEEECCCCeEEEEeCC
Q 011333 84 EPYSVEVLPGGELLILDSANSNLYRISSS 112 (488)
Q Consensus 84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~ 112 (488)
..+.+++.+||+-++|-. ++.|++|+..
T Consensus 160 aAhsL~Fs~DGeqlfaGy-krcirvFdt~ 187 (406)
T KOG2919|consen 160 AAHSLQFSPDGEQLFAGY-KRCIRVFDTS 187 (406)
T ss_pred hheeEEecCCCCeEeecc-cceEEEeecc
Confidence 567889999999666643 6689999863
No 195
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=20.85 E-value=8.6e+02 Score=24.38 Aligned_cols=62 Identities=15% Similarity=0.162 Sum_probs=35.7
Q ss_pred CCcEEEEECCC---CEEE-EEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEE
Q 011333 153 RGNIYIADTMN---MAIR-KIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREI 226 (488)
Q Consensus 153 dG~LYVAD~~N---~rIr-kid--~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI 226 (488)
=|.||++|... .+|. .+| .+.-.. .... ....+.....|.+-+.+..||+=|-|...+..+
T Consensus 180 CGvLY~~~s~~~~~~~I~yafDt~t~~~~~-~~i~------------f~~~~~~~~~l~YNP~dk~LY~wd~G~~v~Y~v 246 (250)
T PF02191_consen 180 CGVLYATDSYDTRDTEIFYAFDTYTGKEED-VSIP------------FPNPYGNISMLSYNPRDKKLYAWDNGYQVTYDV 246 (250)
T ss_pred eeEEEEEEECCCCCcEEEEEEECCCCceec-eeee------------eccccCceEeeeECCCCCeEEEEECCeEEEEEE
Confidence 38999999875 4554 455 222111 1000 011233456677888899999999766555554
Q ss_pred E
Q 011333 227 Q 227 (488)
Q Consensus 227 ~ 227 (488)
.
T Consensus 247 ~ 247 (250)
T PF02191_consen 247 R 247 (250)
T ss_pred E
Confidence 3
No 196
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=20.49 E-value=1.6e+02 Score=22.80 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=20.6
Q ss_pred eEEEEccCCcEEEEECC-------CCeEEEEeCCC
Q 011333 86 YSVEVLPGGELLILDSA-------NSNLYRISSSL 113 (488)
Q Consensus 86 ~GIaVd~dG~LYVaD~~-------n~rI~kid~~g 113 (488)
+.+++.+||.|+++-.. ...|.|++++|
T Consensus 4 ~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DG 38 (55)
T TIGR02608 4 YAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADG 38 (55)
T ss_pred EEEEECCCCcEEEEEEeecCCCcccEEEEEECCCC
Confidence 57889999999988532 13478888875
Done!