BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011335
(488 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XQE|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal
Structure Of Amtb Of E. Coli.
pdb|1XQF|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal
Structure Of Amtb Of E. Coli
Length = 418
Score = 176 bits (446), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 134/434 (30%), Positives = 204/434 (47%), Gaps = 32/434 (7%)
Query: 15 PAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLIC 74
PAV D K D+A+ M + LV ++PG+ + Y +++ K ++ V FA V I
Sbjct: 2 PAVAD---KADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCIL 58
Query: 75 WVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLV 134
WV+ Y +AFG+ G + + E+ + + +A
Sbjct: 59 WVVYGYSLAFGE-------------GNNFFGNINWLMLKNIELTAVMGSIYQYIHVA--- 102
Query: 135 YFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDY 194
FQ +FA ITV L+ G++ R+ A + FV +WL SY A +WGGG L G +D+
Sbjct: 103 -FQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 195 SGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPY 254
+GG V+H+++ IAGL AY +G R+ KE F P+N+ GFN G+
Sbjct: 162 AGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 255 AAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQS 314
A+ +++A +NT VA A ++L W + GKPS++GA G + GLV +TP G +
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 315 WAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQL 374
A+++G+++G + +L + L +VDD VF H V FA L
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKR----LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL 337
Query: 375 CKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQL 434
+ E G G Q L Q+ I W+ V I + + LR+PEEQ
Sbjct: 338 GGVGFAE-------GVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQE 390
Query: 435 AIGDDA-VHGEEAY 447
G D HGE AY
Sbjct: 391 REGLDVNSHGENAY 404
>pdb|2NMR|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|2NOP|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|3C1G|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 176 bits (446), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 134/434 (30%), Positives = 204/434 (47%), Gaps = 32/434 (7%)
Query: 15 PAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLIC 74
PAV D K D+A+ M + LV ++PG+ + Y +++ K ++ V FA V I
Sbjct: 2 PAVAD---KADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCIL 58
Query: 75 WVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLV 134
WV+ Y +AFG+ G + + E+ + + +A
Sbjct: 59 WVVYGYSLAFGE-------------GNNFFGNINWLMLKNIELTAVMGSIYQYIHVA--- 102
Query: 135 YFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDY 194
FQ +FA ITV L+ G++ R+ A + FV +WL SY A +WGGG L G +D+
Sbjct: 103 -FQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 195 SGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPY 254
+GG V+H+++ IAGL AY +G R+ KE F P+N+ GFN G+
Sbjct: 162 AGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 255 AAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQS 314
A+ +++A +NT VA A ++L W + GKPS++GA G + GLV +TP G +
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 315 WAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQL 374
A+++G+++G + +L + L +VDD VF H V FA L
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKR----LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL 337
Query: 375 CKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQL 434
+ E G G Q L Q+ I W+ V I + + LR+PEEQ
Sbjct: 338 GGVGFAE-------GVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQE 390
Query: 435 AIGDDA-VHGEEAY 447
G D HGE AY
Sbjct: 391 REGLDVNSHGENAY 404
>pdb|2NS1|A Chain A, Crystal Structure Of The E. Coli Ammonia Channel Amtb
Complexed With The Signal Transduction Protein Glnk
Length = 412
Score = 176 bits (446), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 134/434 (30%), Positives = 204/434 (47%), Gaps = 32/434 (7%)
Query: 15 PAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLIC 74
PAV D K D+A+ M + LV ++PG+ + Y +++ K ++ V FA V I
Sbjct: 2 PAVAD---KADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCIL 58
Query: 75 WVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLV 134
WV+ Y +AFG+ G + + E+ + + +A
Sbjct: 59 WVVYGYSLAFGE-------------GNNFFGNINWLMLKNIELTAVMGSIYQYIHVA--- 102
Query: 135 YFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDY 194
FQ +FA ITV L+ G++ R+ A + FV +WL SY A +WGGG L G +D+
Sbjct: 103 -FQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 195 SGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPY 254
+GG V+H+++ IAGL AY +G R+ KE F P+N+ GFN G+
Sbjct: 162 AGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 255 AAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQS 314
A+ +++A +NT VA A ++L W + GKPS++GA G + GLV +TP G +
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 315 WAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQL 374
A+++G+++G + +L + L +VDD VF H V FA L
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKR----LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL 337
Query: 375 CKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQL 434
+ E G G Q L Q+ I W+ V I + + LR+PEEQ
Sbjct: 338 GGVGFAE-------GVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQE 390
Query: 435 AIGDDA-VHGEEAY 447
G D HGE AY
Sbjct: 391 REGLDVNSHGENAY 404
>pdb|2NUU|A Chain A, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|B Chain B, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|C Chain C, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|D Chain D, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|E Chain E, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|F Chain F, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
Length = 415
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 130/427 (30%), Positives = 201/427 (47%), Gaps = 29/427 (6%)
Query: 22 NKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYR 81
+K D+A+ M + LV ++PG+ + Y +++ K ++ V FA V I WV+ Y
Sbjct: 15 DKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYS 74
Query: 82 MAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFA 141
+AFG+ G + + E+ + + +A FQ +FA
Sbjct: 75 LAFGE-------------GNNFFGNINWLMLKNIELTAVMGSIYQYIHVA----FQGSFA 117
Query: 142 AITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIH 201
ITV L+ G++ R+ A + FV +WL SY A +WGGG L G +D++GG V+H
Sbjct: 118 CITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVVH 177
Query: 202 VSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASS 261
+++ IAGL AY +G R+ KE F P+N+ GFN G+ A+ ++
Sbjct: 178 INAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAA 237
Query: 262 IAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMG 321
+A +NT VA A ++L W + GKPS++GA G + GLV +TP G + A+++G
Sbjct: 238 LAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIG 297
Query: 322 ILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKLTLPE 381
+++G + +L + L +VDD VF H V FA L + E
Sbjct: 298 VVAGLAGLWGVTMLKR----LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGVGFAE 353
Query: 382 PTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQLAIGDDA- 440
G G Q L Q+ I W+ V I + + LR+PEEQ G D
Sbjct: 354 -------GVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVN 406
Query: 441 VHGEEAY 447
HGE AY
Sbjct: 407 SHGENAY 413
>pdb|2NOW|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 133/434 (30%), Positives = 203/434 (46%), Gaps = 32/434 (7%)
Query: 15 PAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLIC 74
PAV D K D+A+ M + LV ++PG+ + Y +++ K ++ V FA V I
Sbjct: 2 PAVAD---KADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCIL 58
Query: 75 WVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLV 134
WV+ Y +AFG+ G + + E+ + + +A
Sbjct: 59 WVVYGYSLAFGE-------------GNNFFGNINWLMLKNIELTAVMGSIYQYIHVA--- 102
Query: 135 YFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDY 194
FQ +FA ITV L+ G++ R+ A + FV +WL SY A +WGGG L G +D+
Sbjct: 103 -FQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 195 SGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPY 254
+GG V+ +++ IAGL AY +G R+ KE F P+N+ GFN G+
Sbjct: 162 AGGTVVEINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 255 AAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQS 314
A+ +++A +NT VA A ++L W + GKPS++GA G + GLV +TP G +
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 315 WAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQL 374
A+++G+++G + +L + L +VDD VF H V FA L
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKR----LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL 337
Query: 375 CKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQL 434
+ E G G Q L Q+ I W+ V I + + LR+PEEQ
Sbjct: 338 GGVGFAE-------GVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQE 390
Query: 435 AIGDDA-VHGEEAY 447
G D HGE AY
Sbjct: 391 REGLDVNSHGENAY 404
>pdb|3C1I|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 133/434 (30%), Positives = 203/434 (46%), Gaps = 32/434 (7%)
Query: 15 PAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLIC 74
PAV D K D+A+ M + LV ++PG+ + Y +++ K ++ V FA V I
Sbjct: 2 PAVAD---KADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCIL 58
Query: 75 WVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLV 134
WV+ Y +AFG+ G + + E+ + + +A
Sbjct: 59 WVVYGYSLAFGE-------------GNNFFGNINWLMLKNIELTAVMGSIYQYIHVA--- 102
Query: 135 YFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDY 194
FQ +FA ITV L+ G++ R+ A + FV +WL SY A +WGGG L G +D+
Sbjct: 103 -FQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 195 SGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPY 254
+GG V+H+++ IAGL AY +G R+ KE F P+N+ G N G+
Sbjct: 162 AGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGANAGSAG 221
Query: 255 AAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQS 314
A+ +++A +NT VA A ++L W + GKPS++GA G + GLV +TP G +
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 315 WAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQL 374
A+++G+++G + +L + L +VDD VF H V FA L
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKR----LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL 337
Query: 375 CKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQL 434
+ E G G Q L Q+ I W+ V I + + LR+PEEQ
Sbjct: 338 GGVGFAE-------GVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQE 390
Query: 435 AIGDDA-VHGEEAY 447
G D HGE AY
Sbjct: 391 REGLDVNSHGENAY 404
>pdb|3C1H|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 133/434 (30%), Positives = 203/434 (46%), Gaps = 32/434 (7%)
Query: 15 PAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLIC 74
PAV D K D+A+ M + LV ++PG+ + Y +++ K ++ V FA V I
Sbjct: 2 PAVAD---KADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCIL 58
Query: 75 WVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLV 134
WV+ Y +AFG+ G + + E+ + + +A
Sbjct: 59 WVVYGYSLAFGE-------------GNNFFGNINWLMLKNIELTAVMGSIYQYIHVA--- 102
Query: 135 YFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDY 194
FQ + A ITV L+ G++ R+ A + FV +WL SY A +WGGG L G +D+
Sbjct: 103 -FQGSAACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 195 SGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPY 254
+GG V+H+++ IAGL AY +G R+ KE F P+N+ GFN G+
Sbjct: 162 AGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 255 AAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQS 314
A+ +++A +NT VA A ++L W + GKPS++GA G + GLV +TP G +
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 315 WAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQL 374
A+++G+++G + +L + L +VDD VF H V FA L
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKR----LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL 337
Query: 375 CKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQL 434
+ E G G Q L Q+ I W+ V I + + LR+PEEQ
Sbjct: 338 GGVGFAE-------GVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQE 390
Query: 435 AIGDDA-VHGEEAY 447
G D HGE AY
Sbjct: 391 REGLDVNSHGENAY 404
>pdb|2NPD|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 172 bits (436), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 133/434 (30%), Positives = 203/434 (46%), Gaps = 32/434 (7%)
Query: 15 PAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLIC 74
PAV D K D+A+ M + LV ++PG+ + Y +++ K ++ V FA V I
Sbjct: 2 PAVAD---KADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCIL 58
Query: 75 WVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLV 134
WV+ Y +AFG+ G + + E+ + + +A
Sbjct: 59 WVVYGYSLAFGE-------------GNNFFGNINWLMLKNIELTAVMGSIYQYIHVA--- 102
Query: 135 YFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDY 194
FQ +FA ITV L+ G++ R+ A + FV +WL SY A +WGGG L G +D+
Sbjct: 103 -FQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 195 SGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPY 254
+GG V+ +++ IAGL AY +G R+ KE F P+N+ GFN G+
Sbjct: 162 AGGTVVFINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 255 AAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQS 314
A+ +++A +NT VA A ++L W + GKPS++GA G + GLV +TP G +
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 315 WAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQL 374
A+++G+++G + +L + L +VDD VF H V FA L
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKR----LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL 337
Query: 375 CKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQL 434
+ E G G Q L Q+ I W+ V I + + LR+PEEQ
Sbjct: 338 GGVGFAE-------GVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQE 390
Query: 435 AIGDDA-VHGEEAY 447
G D HGE AY
Sbjct: 391 REGLDVNSHGENAY 404
>pdb|2NPG|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|2NPJ|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 172 bits (436), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 133/434 (30%), Positives = 203/434 (46%), Gaps = 32/434 (7%)
Query: 15 PAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLIC 74
PAV D K D+A+ M + LV ++PG+ + Y +++ K ++ V FA V I
Sbjct: 2 PAVAD---KADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCIL 58
Query: 75 WVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLV 134
WV+ Y +AFG+ G + + E+ + + +A
Sbjct: 59 WVVYGYSLAFGE-------------GNNFFGNINWLMLKNIELTAVMGSIYQYIHVA--- 102
Query: 135 YFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDY 194
FQ +FA ITV L+ G++ R+ A + FV +WL SY A +WGGG L G +D+
Sbjct: 103 -FQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 195 SGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPY 254
+GG V+H+++ IAGL AY +G R+ KE F P+N+ GFN G+
Sbjct: 162 AGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 255 AAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQS 314
A+ +++A +NT VA A ++L W + GKPS++GA G + GLV +TP G +
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 315 WAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQL 374
A+++G+++G + +L + L +VDD VF V FA L
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKR----LLRVDDPCDVFGVFGVCGIVGCIMTGIFAASSL 337
Query: 375 CKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQL 434
+ E G G Q L Q+ I W+ V I + + LR+PEEQ
Sbjct: 338 GGVGFAE-------GVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQE 390
Query: 435 AIGDDA-VHGEEAY 447
G D HGE AY
Sbjct: 391 REGLDVNSHGENAY 404
>pdb|2NPC|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 172 bits (435), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 133/434 (30%), Positives = 203/434 (46%), Gaps = 32/434 (7%)
Query: 15 PAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLIC 74
PAV D K D+A+ M + LV ++PG+ + Y +++ K ++ V FA V I
Sbjct: 2 PAVAD---KADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCIL 58
Query: 75 WVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLV 134
WV+ Y +AFG+ G + + E+ + + +A
Sbjct: 59 WVVYGYSLAFGE-------------GNNFFGNINWLMLKNIELTAVMGSIYQYIHVA--- 102
Query: 135 YFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDY 194
FQ +FA ITV L+ G++ R+ A + FV +WL SY A +WGGG L G +D+
Sbjct: 103 -FQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 195 SGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPY 254
+GG V+ +++ IAGL AY +G R+ KE F P+N+ GFN G+
Sbjct: 162 AGGTVVAINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 255 AAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQS 314
A+ +++A +NT VA A ++L W + GKPS++GA G + GLV +TP G +
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 315 WAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQL 374
A+++G+++G + +L + L +VDD VF H V FA L
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKR----LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL 337
Query: 375 CKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQL 434
+ E G G Q L Q+ I W+ V I + + LR+PEEQ
Sbjct: 338 GGVGFAE-------GVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQE 390
Query: 435 AIGDDA-VHGEEAY 447
G D HGE AY
Sbjct: 391 REGLDVNSHGENAY 404
>pdb|2NPE|A Chain A, An Unusual Twin-his Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 172 bits (435), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 133/434 (30%), Positives = 203/434 (46%), Gaps = 32/434 (7%)
Query: 15 PAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLIC 74
PAV D K D+A+ M + LV ++PG+ + Y +++ K ++ V FA V I
Sbjct: 2 PAVAD---KADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCIL 58
Query: 75 WVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLV 134
WV+ Y +AFG+ G + + E+ + + +A
Sbjct: 59 WVVYGYSLAFGE-------------GNNFFGNINWLMLKNIELTAVMGSIYQYIHVA--- 102
Query: 135 YFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDY 194
FQ +FA ITV L+ G++ R+ A + FV +WL SY A +WGGG L G +D+
Sbjct: 103 -FQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 195 SGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPY 254
+GG V+H+++ IAGL AY +G R+ KE F P+N+ GFN G+
Sbjct: 162 AGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 255 AAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQS 314
A+ +++A +NT VA A ++L W + GKPS++GA G + GLV +TP G +
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 315 WAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQL 374
A+++G+++G + +L + L +VDD VF V FA L
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKR----LLRVDDPCDVFGVAGVCGIVGCIMTGIFAASSL 337
Query: 375 CKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQL 434
+ E G G Q L Q+ I W+ V I + + LR+PEEQ
Sbjct: 338 GGVGFAE-------GVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQE 390
Query: 435 AIGDDA-VHGEEAY 447
G D HGE AY
Sbjct: 391 REGLDVNSHGENAY 404
>pdb|3C1J|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 169 bits (427), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 132/434 (30%), Positives = 202/434 (46%), Gaps = 32/434 (7%)
Query: 15 PAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLIC 74
PAV D K D+A+ M + LV ++PG+ + Y +++ K ++ V FA V I
Sbjct: 2 PAVAD---KADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCIL 58
Query: 75 WVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLV 134
WV+ Y +AFG+ G + + E+ + + +A
Sbjct: 59 WVVYGYSLAFGE-------------GNNFFGNINWLMLKNIELTAVMGSIYQYIHVA--- 102
Query: 135 YFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDY 194
FQ + A ITV L+ G++ R+ A + FV +WL SY A +WGGG L G +D+
Sbjct: 103 -FQGSAACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 195 SGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPY 254
+GG V+H+++ IAGL AY +G R+ KE F P+N+ G N G+
Sbjct: 162 AGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGANAGSAG 221
Query: 255 AAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQS 314
A+ +++A +NT VA A ++L W + GKPS++GA G + GLV +TP G +
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 315 WAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQL 374
A+++G+++G + +L + L +VDD VF H V FA L
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKR----LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL 337
Query: 375 CKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQL 434
+ E G G Q L Q+ I W+ V I + + LR+PEEQ
Sbjct: 338 GGVGFAE-------GVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQE 390
Query: 435 AIGDDA-VHGEEAY 447
G D HGE AY
Sbjct: 391 REGLDVNSHGENAY 404
>pdb|2NPK|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 168 bits (425), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 132/434 (30%), Positives = 202/434 (46%), Gaps = 32/434 (7%)
Query: 15 PAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLIC 74
PAV D K D+A+ M + LV ++PG+ + Y +++ K ++ V FA V I
Sbjct: 2 PAVAD---KADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCIL 58
Query: 75 WVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLV 134
WV+ Y +AFG+ G + + E+ + + +A
Sbjct: 59 WVVYGYSLAFGE-------------GNNFFGNINWLMLKNIELTAVMGSIYQYIHVA--- 102
Query: 135 YFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDY 194
FQ +FA ITV L+ G++ R+ A + FV +WL SY A +WGGG L G +D+
Sbjct: 103 -FQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 195 SGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPY 254
+GG V+ +++ IAGL AY +G R+ KE F P+N+ GFN G+
Sbjct: 162 AGGTVVAINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 255 AAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQS 314
A+ +++A +NT VA A ++L W + GKPS++GA G + GLV +TP G +
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 315 WAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQL 374
A+++G+++G + +L + L +VDD VF V FA L
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKR----LLRVDDPCDVFGVAGVCGIVGCIMTGIFAASSL 337
Query: 375 CKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQL 434
+ E G G Q L Q+ I W+ V I + + LR+PEEQ
Sbjct: 338 GGVGFAE-------GVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQE 390
Query: 435 AIGDDA-VHGEEAY 447
G D HGE AY
Sbjct: 391 REGLDVNSHGENAY 404
>pdb|1U77|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli
pdb|1U7C|A Chain A, Crystal Structure Of Amtb From E.Coli With Methyl
Ammonium.
pdb|1U7G|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli
Length = 385
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 118/396 (29%), Positives = 184/396 (46%), Gaps = 31/396 (7%)
Query: 15 PAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLIC 74
PAV D K D+A+ + LV ++PG+ + Y +++ K ++ V FA V I
Sbjct: 2 PAVAD---KADNAFXXICTALVLFXTIPGIALFYGGLIRGKNVLSXLTQVTVTFALVCIL 58
Query: 75 WVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLV 134
WV+ Y +A G+ G + + E+ + + +A
Sbjct: 59 WVVYGYSLASGE-------------GNNFFGNINWLXLKNIELTAVXGSIYQYIHVA--- 102
Query: 135 YFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDY 194
FQ +FA ITV L+ G++ R+ A + FV +WL SY A +WGGG L G +D+
Sbjct: 103 -FQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHXVWGGGLLASHGALDF 161
Query: 195 SGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPY 254
+GG V+H+++ IAGL AY +G R+ KE F P+N+ GFN G+
Sbjct: 162 AGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPXVFTGTAILYIGWFGFNAGSAG 221
Query: 255 AAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQS 314
A+ +++A +NT VA A ++L W + G PS++GA G + GLV +TP G +
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 315 WAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQL 374
A+++G+++G + L + L +VDD VF H V FA L
Sbjct: 282 GGALIIGVVAGLAGLWGVTXLKR----LLRVDDPCDVFGVHGVCGIVGCIXTGIFAASSL 337
Query: 375 CKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWN 410
+ E G G Q L Q+ I W+
Sbjct: 338 GGVGFAE-------GVTXGHQLLVQLESIAITIVWS 366
>pdb|2B2F|A Chain A, Ammonium Transporter Amt-1 From A.Fulgidus (Native)
pdb|2B2H|A Chain A, Ammonium Transporter Amt-1 From A. Fulgidus (as)
pdb|2B2I|A Chain A, Ammonium Transporter Amt-1 From A. Fulgidus (Ma)
pdb|2B2J|A Chain A, Ammonium Transporter Amt-1 From A. Fulgidus (xe)
Length = 399
Score = 144 bits (364), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 118/431 (27%), Positives = 203/431 (47%), Gaps = 41/431 (9%)
Query: 21 LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCY 80
++ G+ AW + ++ LV + +PG+ YA +V++K AVN + + ++ W+ Y
Sbjct: 1 MSDGNVAWILASTALVMLM-VPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGY 59
Query: 81 RMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTF 140
++FG+ + G L L G V G+ + + +Q F
Sbjct: 60 SVSFGNDISGIIG----GLNYALLSG----------VKGEDL---------LFMMYQMMF 96
Query: 141 AAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVI 200
AA+T+ +L ++ R + +++ LWL F Y A LWGGG+L + G +D++GG V+
Sbjct: 97 AAVTIAILTSAIAERAKVSSFILLSALWLTFVYAPFAHWLWGGGWLAKLGALDFAGGMVV 156
Query: 201 HVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIAS 260
H+SSG A L A +G R ++ P+++ GFNGG+ AA+ +
Sbjct: 157 HISSGFAALAVAMTIGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAANDVA 216
Query: 261 SIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVM 320
A++ TN +AA + VW + I GKP +G V G + GL ITP AG V AIV+
Sbjct: 217 INAVVVTNTSAAVAGFVWMVIGWI-KGKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVI 275
Query: 321 GILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKLTLP 380
G+++G + ++ M KK ++D++L + H + A P++
Sbjct: 276 GLVAGIVCYLAMDFRIKK-----KIDESLDAWAIHGIGGLWGSVAVGILANPEV------ 324
Query: 381 EPTRGAFYGGKGGVQFL-KQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQLAIG-D 438
G +G Q L Q++ A+ + T I+ A+ + LR+ ++ +G D
Sbjct: 325 NGYAGLLFGNP---QLLVSQLIAVASTTAYAFLVTLILAKAVDAAVGLRVSSQEEYVGLD 381
Query: 439 DAVHGEEAYAL 449
+ H E AY L
Sbjct: 382 LSQHEEVAYTL 392
>pdb|2VX2|A Chain A, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|B Chain B, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|C Chain C, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|D Chain D, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|E Chain E, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|F Chain F, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|G Chain G, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|H Chain H, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|I Chain I, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
Length = 287
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 43/107 (40%), Gaps = 25/107 (23%)
Query: 262 IAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGL---------- 311
IA++N AA LV +C + K S A G+ GL C TPG L
Sbjct: 130 IAMVNGLATAAGCQLVASCDIAVASDKSSF--ATPGVNVGLFCSTPGVALARAVPRKVAL 187
Query: 312 --------VQSWAAIVMGILSGSIPWV-----TMMILHKKCSLLQQV 345
+ + A++ G+LS +P TM I K SL + V
Sbjct: 188 EMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLSRPV 234
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,798,820
Number of Sequences: 62578
Number of extensions: 599182
Number of successful extensions: 1579
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1513
Number of HSP's gapped (non-prelim): 39
length of query: 488
length of database: 14,973,337
effective HSP length: 103
effective length of query: 385
effective length of database: 8,527,803
effective search space: 3283204155
effective search space used: 3283204155
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)