Query 011335
Match_columns 488
No_of_seqs 142 out of 1352
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 00:12:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011335.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011335hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0004 AmtB Ammonia permease 100.0 3E-107 7E-112 835.0 38.4 403 21-450 1-405 (409)
2 KOG0682 Ammonia permease [Inor 100.0 2E-106 4E-111 837.4 36.3 419 10-450 17-445 (500)
3 PRK10666 ammonium transporter; 100.0 3E-103 6E-108 823.1 37.2 401 20-449 26-428 (428)
4 TIGR00836 amt ammonium transpo 100.0 2E-100 3E-105 799.8 38.9 397 26-447 1-403 (403)
5 TIGR03644 marine_trans_1 proba 100.0 1.5E-99 3E-104 791.5 38.1 388 24-450 3-404 (404)
6 PF00909 Ammonium_transp: Ammo 100.0 1E-92 2.2E-97 744.4 21.7 390 27-447 1-399 (399)
7 KOG3796 Ammonium transporter R 100.0 1.2E-52 2.6E-57 419.3 11.1 391 38-451 18-433 (442)
8 PF00909 Ammonium_transp: Ammo 75.2 38 0.00081 36.1 12.2 141 21-218 185-328 (399)
9 PRK11624 cdsA CDP-diglyceride 67.0 7.1 0.00015 39.8 4.3 87 269-356 159-258 (285)
10 PF01148 CTP_transf_1: Cytidyl 66.3 7.6 0.00017 37.8 4.3 67 289-356 161-236 (259)
11 PF06946 Phage_holin_5: Phage 66.2 34 0.00073 29.2 7.4 59 287-347 33-92 (93)
12 PLN02594 phosphatidate cytidyl 55.7 7.9 0.00017 40.5 2.3 42 314-356 235-276 (342)
13 PF11085 YqhR: Conserved membr 48.6 91 0.002 29.6 7.9 31 395-425 66-96 (173)
14 COG0575 CdsA CDP-diglyceride s 44.5 23 0.00049 35.6 3.5 80 276-356 148-241 (265)
15 TIGR00836 amt ammonium transpo 42.1 4.7E+02 0.01 28.1 16.9 139 23-218 193-333 (403)
16 PRK10712 PTS system fructose-s 41.7 1E+02 0.0023 34.6 8.4 51 286-350 294-344 (563)
17 PF06570 DUF1129: Protein of u 37.3 94 0.002 29.9 6.4 111 229-347 76-205 (206)
18 PF01891 CbiM: Cobalt uptake s 37.0 96 0.0021 29.8 6.4 85 196-303 61-145 (205)
19 PF14074 DUF4257: Protein of u 35.1 20 0.00043 29.9 1.2 58 269-326 4-74 (82)
20 TIGR03644 marine_trans_1 proba 34.1 6.3E+02 0.014 27.2 18.2 57 153-216 288-344 (404)
21 COG4120 ABC-type uncharacteriz 33.3 33 0.00072 34.7 2.6 46 298-347 42-87 (293)
22 PLN02953 phosphatidate cytidyl 33.3 47 0.001 35.5 3.9 44 312-356 331-374 (403)
23 PRK06433 NADH dehydrogenase su 30.5 66 0.0014 27.1 3.6 41 394-437 47-87 (88)
24 PF04657 DUF606: Protein of un 30.3 2.9E+02 0.0063 24.9 8.1 85 314-427 30-114 (138)
25 TIGR01427 PTS_IIC_fructo PTS s 29.1 2.9E+02 0.0063 29.1 8.9 51 281-337 82-132 (346)
26 PRK10457 hypothetical protein; 28.4 1.4E+02 0.003 24.9 5.1 72 315-408 4-75 (82)
27 PRK04032 hypothetical protein; 27.8 26 0.00055 32.9 0.7 33 314-347 67-99 (159)
28 PF06738 DUF1212: Protein of u 27.0 1.4E+02 0.003 28.1 5.6 72 226-308 98-171 (193)
29 PF12270 Cyt_c_ox_IV: Cytochro 26.9 1.9E+02 0.004 26.6 6.0 45 168-220 17-63 (137)
30 COG1230 CzcD Co/Zn/Cd efflux s 24.0 7.3E+02 0.016 25.6 10.5 120 199-322 54-197 (296)
31 PF06210 DUF1003: Protein of u 21.4 1.9E+02 0.0042 25.3 4.9 43 239-281 11-54 (108)
32 PRK11909 cobalt transport prot 21.2 4.9E+02 0.011 25.7 8.4 24 315-338 189-212 (230)
33 COG0038 EriC Chloride channel 21.2 1.9E+02 0.0041 31.4 5.9 48 315-362 236-285 (443)
34 COG5070 VRG4 Nucleotide-sugar 21.1 1.7E+02 0.0036 29.3 4.9 63 268-331 224-297 (309)
35 TIGR01594 holin_lambda phage h 20.7 1.9E+02 0.004 25.3 4.7 53 292-347 47-107 (107)
36 PRK11375 allantoin permease; P 20.6 2.2E+02 0.0048 31.2 6.4 29 409-437 456-484 (484)
37 PF06143 Baculo_11_kDa: Baculo 20.4 45 0.00097 28.0 0.7 43 4-47 13-55 (84)
38 COG1079 Uncharacterized ABC-ty 20.1 3.2E+02 0.007 28.3 7.0 45 311-359 59-103 (304)
No 1
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-107 Score=834.97 Aligned_cols=403 Identities=39% Similarity=0.714 Sum_probs=371.3
Q ss_pred ccccchHHHHHHHHHHHHHhhHHHhhhcccccccccHHHHHHHHHHHHHHHHHHHHhhchhhcccCCCCCcccCCccchh
Q 011335 21 LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALG 100 (488)
Q Consensus 21 ~~~~d~~w~L~~~~lV~~~m~~GfalleaG~Vr~kn~~~~l~~~~~~~~i~~i~~~~~Gy~laFG~~~~~fiG~~~~~~~ 100 (488)
+|++|+.|+|+|+.|| ++|||||+++|+|++|+||++|+++|+++++++++++|+++||+++||++.++|+|+...+
T Consensus 1 ~~~~d~~wml~sa~LV-~lMtpGlalfy~Gl~R~Kn~ln~~m~~~~~~~i~~~~w~~~Gyslafg~~~~~~iG~~~~~-- 77 (409)
T COG0004 1 MDSGDTAWMLLSAALV-LLMTPGLALFYGGLVRKKNVLNTLMQSFVAFAIVTLLWIFVGYSLAFGPDGNGFIGNLDQF-- 77 (409)
T ss_pred CCcccHHHHHHHHHHH-HHHhhHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhheecCCCCcccCCHHHH--
Confidence 3678999999999999 9999999999999999999999999999999999999999999999998667899986421
Q ss_pred hhhhcccCCCCCCccccCCccccCCcchhHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhhccccee
Q 011335 101 QKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSL 180 (488)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~fq~~Faa~a~~I~sGavaeR~~~~~~~i~~~l~~~~vY~v~ahwv 180 (488)
+++....... .+ ..++|...+++||++||++|++|++|+++||+|+.+|++|+++|.+++|||++||+
T Consensus 78 ---~~~~~~~~~~----~~-----~~~ip~~~f~~FQ~~FAait~alisGa~AER~kf~a~lvf~~lw~~~vY~p~ahWv 145 (409)
T COG0004 78 ---FLNGLGFAAV----AG-----GAGIPELVFFAFQMMFAAITPALISGAVAERMKFSAYLLFSVLWSTLVYPPVAHWV 145 (409)
T ss_pred ---hccCcccccc----CC-----cccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhheeE
Confidence 1111100000 01 13589999999999999999999999999999999999999999999999999999
Q ss_pred e-ccchhhcccceeccCCeeehhhhHHHHHHHHHHHccCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhcCCcccccchh
Q 011335 181 W-GGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIA 259 (488)
Q Consensus 181 W-~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~~~~~~~~~~~s~~~~~lGt~lLw~gW~gFN~gs~~~~~~~ 259 (488)
| ++|||.++|++|||||+|||..+|+.||++++++|||+++.+++++|||++++++|+.+||+||+|||+||+++.+.+
T Consensus 146 Wggggwl~~~g~~DFAGgtVVHi~aG~aaLa~a~~lG~R~g~~~~~~~pHNl~~~~lGa~lLWfGWfGFN~GSal~~~~~ 225 (409)
T COG0004 146 WGGGGWLALLGALDFAGGTVVHINAGFAALAAALVLGKRIGGKPVAIPPHNLPLVVLGAALLWFGWFGFNAGSALAANGV 225 (409)
T ss_pred ecCchHHHhcCceecCCCceEEechhHHHHHHHHHeecccCCCCCCCCCCchhHHHHHHHHHHHHHccCCccchhhhhhh
Confidence 9 566999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhhhhcccceeccCCCCcchHHHHHHHHhhhhHHHHHHHHHHhhh
Q 011335 260 SSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKC 339 (488)
Q Consensus 260 ~~~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LAGlVaIta~a~~v~pw~A~iiG~iag~i~~~~~~~l~~~l 339 (488)
+..+++||++|+++++++|++++|+++||+|+..+|||++||||+|||+|++|+||+|++||+++|++|+++.++++|+
T Consensus 226 a~~a~~nT~lAaa~g~l~w~~~e~~~~~Kp~~lg~~sG~vAGLVaITpaag~V~p~~A~iiGii~g~i~~~a~~~lk~~- 304 (409)
T COG0004 226 AALAFVNTNLAAAAGALGWMLIEWLRNGKPSLLGAASGAVAGLVAITPAAGFVSPWGALIIGLIAGVICYFAVKLLKKK- 304 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhHHHhHHHhcCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999888775
Q ss_pred ccccccccccccccccchhhhHhhhhhhhccCccccccCCCCCCCccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011335 340 SLLQQVDDTLAVFHTHAVTGLLGGLLTGLFAEPQLCKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILL 419 (488)
Q Consensus 340 ~~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~Gl~~g~~~~~ql~~Ql~g~~v~~~ws~~~~~i~~~ 419 (488)
+|+|||+|++++||++|+||+|++|+|++++.. ...|.+|+ +.+|++.|+.+++++.+|++++++++++
T Consensus 305 ---l~~DD~ld~f~vHGvgGi~G~i~~GiFa~~~~~------~~~G~~~~--~~~~l~~Q~~~v~~~~~~~~v~t~ii~~ 373 (409)
T COG0004 305 ---LGVDDALDVFGVHGVGGIVGAILTGIFAAPAVG------GGGGLFYG--GGVQLGVQLLGVLVTIVYAFVVTFIILK 373 (409)
T ss_pred ---cCCCCcccceeccchhhHHHHHHHHHhcCcccc------ccCccccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999998641 12355553 6899999999999999999999999999
Q ss_pred HHHHhcCCCCChHHhhcC-ChhhhCccccccc
Q 011335 420 AIRIFIPLRMPEEQLAIG-DDAVHGEEAYALW 450 (488)
Q Consensus 420 ~l~~~~~lRvs~e~E~~G-D~~~hg~~ay~~~ 450 (488)
++|++.+||||||||++| |.+||||++|++.
T Consensus 374 vl~~~~gLRvs~eeE~~GlD~~~Hge~aY~~~ 405 (409)
T COG0004 374 VLKLIIGLRVSEEEELEGLDISEHGESAYSEE 405 (409)
T ss_pred HHHhccCCCCCHHHHhhCCChHHhcccccccc
Confidence 999999999999999999 9999999999874
No 2
>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-106 Score=837.42 Aligned_cols=419 Identities=35% Similarity=0.569 Sum_probs=383.0
Q ss_pred ccCCCCCccccccccchHHHHHHHHHHHHHhhHHHhhhcccccccccHHHHHHHHHHHHHHHHHHHHhhchhhcccCC-C
Q 011335 10 YQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQ-L 88 (488)
Q Consensus 10 ~~~~~~~~~~~~~~~d~~w~L~~~~lV~~~m~~GfalleaG~Vr~kn~~~~l~~~~~~~~i~~i~~~~~Gy~laFG~~-~ 88 (488)
.+.+++.+++..|..|+.|++.++.+| |+|||||+|||+|+||+||++|+|+||+++.+++.++||++||+||||+. .
T Consensus 17 ~~~~~~~~~~~y~~dn~~~l~sss~lv-F~M~~Gfg~L~sG~vr~Kna~nim~~nvld~a~g~l~y~~~GyslAFg~~~~ 95 (500)
T KOG0682|consen 17 GNVLTKFTPNAYDLDNTAWLLSSSFLV-FTMQPGFGLLYSGLVRAKNAVNIMLKNVLDVAVGGLQYYLFGYSLAFGDSPS 95 (500)
T ss_pred cccccccCcchhcCCchhhHHHHHHHH-HHhcccHHHhhhccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeeccCCCC
Confidence 344777888889999999999999999 99999999999999999999999999999999999999999999999998 7
Q ss_pred CCcccCCccchhhhhhcccCCCCCCccccCCccccCCcchhHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHH
Q 011335 89 LPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLW 168 (488)
Q Consensus 89 ~~fiG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~fq~~Faa~a~~I~sGavaeR~~~~~~~i~~~l~ 168 (488)
++|||+.++ ++...+.+.. +. ...+|++.+++||++||+++++|++|+++||.|+++|++|+++|
T Consensus 96 n~FiG~~~~-F~~~~~~g~~-------------~~-~~~~p~~~~f~FQ~~FA~~a~~i~sGa~AER~~l~~~~v~~~~~ 160 (500)
T KOG0682|consen 96 NGFIGKLDF-FGLRNVSGDP-------------SS-GSTIPDYSFFLFQGMFAATAATIVSGAVAERGRLKPYMVFSFFL 160 (500)
T ss_pred CCceeeccc-cccccCCCCc-------------CC-ccchhhHHHHHHHHHHHHHHHHHhhhHHHhhhcchhHHHHHHHH
Confidence 899999874 2221111111 01 11278999999999999999999999999999999999999999
Q ss_pred HHhhhhcccceee-ccchhhcccceeccCCeeehhhhHHHHHHHHHHHccCCCCC---CCCCCCCcHHHHHHHHHHHHHh
Q 011335 169 LMFSYTVGAFSLW-GGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSD---KERFPPNNVLLMLAGAGLLWMG 244 (488)
Q Consensus 169 ~~~vY~v~ahwvW-~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~~~~---~~~~~~~s~~~~~lGt~lLw~g 244 (488)
.++||||++||+| ++||++++|++|||||.+||++||++||++++++|||++|+ ..+++|||+++++||+++||+|
T Consensus 161 ~tlVY~~~a~W~W~~~Gw~~~~gviDfAG~g~VHl~gG~agl~~a~~lGpR~~r~~~~~~~~~~hsv~~v~LGt~lLWfG 240 (500)
T KOG0682|consen 161 TTLVYCPVAHWVWSPNGWLYKLGVIDFAGGGVVHLVGGVAGLVAALILGPRIGRFFGKAIALRPHSVTLVVLGTFLLWFG 240 (500)
T ss_pred HHhcccccceeeecCCceeeecceeeccCCceeEecccHHHHHHHHHhCCccCcccccccccCCCchhHHHHHHHHHHHH
Confidence 9999999999999 79999999999999999999999999999999999999963 4578999999999999999999
Q ss_pred hhhhcCCcccccchhhH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhhhhcccceeccCCCCcchHHHHHHHHh
Q 011335 245 WSGFNGGAPYAAHIASS-IAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGIL 323 (488)
Q Consensus 245 W~gFN~gs~~~~~~~~~-~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LAGlVaIta~a~~v~pw~A~iiG~i 323 (488)
|++||+||.++++.+.. ++++||+||++.|+++|++++++++||+|+..+|||+|+|||||||+|++++||+|+++|++
T Consensus 241 Wl~FN~GS~~~i~~~~~~~a~vnT~Ls~a~gglt~~~~d~~~~~kwsv~~~cnG~laGlVaiT~gc~~v~pWaAiviG~v 320 (500)
T KOG0682|consen 241 WLGFNGGSFYAINLRSWARAAVNTILSGATGGLTWLIIDYLRHGKWSVIGLCNGILAGLVAITPGCGVVEPWAAIVIGAV 320 (500)
T ss_pred HHccCCcccccccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcCCcchhhhHHHHHHHHHhhcCCCcccCcHHHHHHhHH
Confidence 99999999999888877 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhccccccccccccccccchhhhHhhhhhhhccCccccccCCC--CCCCccccCCcchHHHHHHHH
Q 011335 324 SGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVTGLLGGLLTGLFAEPQLCKLTLP--EPTRGAFYGGKGGVQFLKQIV 401 (488)
Q Consensus 324 ag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~~~~~~--~~~~Gl~~g~~~~~ql~~Ql~ 401 (488)
+|++|.+..+. ++++|||||+|++++||+||+||.|++|+|+.+.+...++. +..+|+.+++ +++|+++|++
T Consensus 321 a~~~~~~~~kL-----~~~lkvDDpl~~f~~Hgv~G~wG~I~~glFa~~~v~~~~~~~~~~~~G~~~~~-~~kqLg~Qla 394 (500)
T KOG0682|consen 321 AGLVCNAANKL-----KERLKVDDPLDAFAVHGVGGIWGLIFTGLFAHDDVAAMDGTTIARISGLWMGH-GFKQLGYQLA 394 (500)
T ss_pred HHHHHHHHHHH-----HHHhcCCcHHHHHHHhccccchhhheeeeeccCccccccCCCccCCCceeecc-hHHHHHHHHH
Confidence 99998876653 45589999999999999999999999999999887655543 2567888887 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CCCChHHhhcC-ChhhhCccccccc
Q 011335 402 GALFVIAWNLVSTTIILLAIRIFIP-LRMPEEQLAIG-DDAVHGEEAYALW 450 (488)
Q Consensus 402 g~~v~~~ws~~~~~i~~~~l~~~~~-lRvs~e~E~~G-D~~~hg~~ay~~~ 450 (488)
+++++.+|+++++.++++++||+.+ ||+|+|||++| |..||||.+|+..
T Consensus 395 ~i~ai~~ws~~~t~iilf~l~kip~~LRvs~e~E~~G~D~~~hGe~ay~~~ 445 (500)
T KOG0682|consen 395 GILAIAAWSAVVTFIILFLLNKIPLGLRVSEEEEELGMDATEHGEAAYDYH 445 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccceeecCHHHHhcCCCHhhhhhhhcchh
Confidence 9999999999999999999999988 99999999999 9999999999753
No 3
>PRK10666 ammonium transporter; Provisional
Probab=100.00 E-value=2.9e-103 Score=823.11 Aligned_cols=401 Identities=35% Similarity=0.585 Sum_probs=364.1
Q ss_pred cccccchHHHHHHHHHHHHHhh-HHHhhhcccccccccHHHHHHHHHHHHHHHHHHHHhhchhhcccCCCCCcccCCccc
Q 011335 20 WLNKGDSAWQMTASTLVGIQSM-PGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPA 98 (488)
Q Consensus 20 ~~~~~d~~w~L~~~~lV~~~m~-~GfalleaG~Vr~kn~~~~l~~~~~~~~i~~i~~~~~Gy~laFG~~~~~fiG~~~~~ 98 (488)
.+|+.|+.|+|+|++|| ++|| |||+|||+|+||+||++|+++||++++++++++||++||+++||++ ++|+|+.+++
T Consensus 26 ~~~~~d~~w~l~~~~lV-~~M~~~Gfalle~G~vR~KN~~n~~~k~~~~~~~~~l~w~~~Gy~lafg~~-~~~iG~~~~~ 103 (428)
T PRK10666 26 VADKADNAFMMICTALV-LFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFGEG-NAFFGNFNWL 103 (428)
T ss_pred ccccccHHHHHHHHHHH-HHHHHhHHHHhhccccchhHHHHHHHHHHHHHHHHHHeeeeeeHHHHhCCC-CCcccChHHh
Confidence 57889999999999999 9998 9999999999999999999999999999999999999999999975 5788865422
Q ss_pred hhhhhhcccCCCCCCccccCCccccCCcchhHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhhcccc
Q 011335 99 LGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAF 178 (488)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~fq~~Faa~a~~I~sGavaeR~~~~~~~i~~~l~~~~vY~v~ah 178 (488)
+++....+ .....+|...+++||++||+++++|++|+++||+|+++|++|+++|++++|||++|
T Consensus 104 -----~~~~~~~~-----------~~~~~~~~~~~~~FQ~~Faa~a~tIvsGavaER~~~~~~lif~~~~~~~vY~~vah 167 (428)
T PRK10666 104 -----MLKNIELT-----------AVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAH 167 (428)
T ss_pred -----hhcCCCcc-----------cccccchhHHHHHHHHHHHHHHHHHHHhHhhccccHHHHHHHHHHHHHHHHHHhhh
Confidence 11111000 01123677889999999999999999999999999999999999999999999999
Q ss_pred eeeccchhhcccceeccCCeeehhhhHHHHHHHHHHHccCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhcCCcccccch
Q 011335 179 SLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHI 258 (488)
Q Consensus 179 wvW~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~~~~~~~~~~~s~~~~~lGt~lLw~gW~gFN~gs~~~~~~ 258 (488)
|+|++|||.++|++|||||+|||++||++||++++++|||+++.+++++|||++++++|+++||+||+|||+||++..+.
T Consensus 168 WvW~~GwL~~lG~~DfAG~~vVH~~gG~~aL~~a~~lG~R~g~~~~~~~~hn~~~~~lGt~lLw~GW~gFN~Gs~~~~~~ 247 (428)
T PRK10666 168 MVWGGGLLASDGALDFAGGTVVHINAAVAGLVGAYLLGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGAANE 247 (428)
T ss_pred heeCchhHhhcchhhhcccchhHHhHHHHHHHHHHHhcccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhccchhhccccc
Confidence 99999999999999999999999999999999999999999988888999999999999999999999999999988888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhhhhcccceeccCCCCcchHHHHHHHHhhhhHHHHHHHHHHhh
Q 011335 259 ASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKK 338 (488)
Q Consensus 259 ~~~~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LAGlVaIta~a~~v~pw~A~iiG~iag~i~~~~~~~l~~~ 338 (488)
++.++++||++|+++|+++|++++++.+||+|+.++|||+|||||+|||+|++++||+|++||+++|++|+++.+++++
T Consensus 248 ~a~~a~~nT~la~a~g~l~~~~~~~~~~gk~~~~~~~nG~LaGLVaITa~a~~v~p~~A~iiG~vag~v~~~~~~~l~~- 326 (428)
T PRK10666 248 IAALAFVNTVVATAAAILGWVFGEWALRGKPSLLGACSGAIAGLVGVTPACGYVGVGGALIIGVVAGLAGLWGVTMLKR- 326 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998877665
Q ss_pred hccccccccccccccccchhhhHhhhhhhhccCccccccCCCCCCCccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011335 339 CSLLQQVDDTLAVFHTHAVTGLLGGLLTGLFAEPQLCKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIIL 418 (488)
Q Consensus 339 l~~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~Gl~~g~~~~~ql~~Ql~g~~v~~~ws~~~~~i~~ 418 (488)
++|||||+|++++||+||+||++++|+|+.++..+. |...+...++|++.|++|++++++|+++.+++++
T Consensus 327 ---~~~iDD~~~a~~vHgv~Gi~G~l~~glfa~~~~~~~-------~~~~g~~~~~ql~~Ql~g~~~~~~~~~~~t~ii~ 396 (428)
T PRK10666 327 ---WLRVDDPCDVFGVHGVCGIVGCILTGIFAASSLGGV-------GYAEGVTMGHQVLVQLESIAITIVWSGVVAFIGY 396 (428)
T ss_pred ---cCCCCCCcCccHhhhHhHHHHHHHHHHhhchhccCc-------cccCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999998754211 1111112347999999999999999999999999
Q ss_pred HHHHHhcCCCCChHHhhcC-ChhhhCcccccc
Q 011335 419 LAIRIFIPLRMPEEQLAIG-DDAVHGEEAYAL 449 (488)
Q Consensus 419 ~~l~~~~~lRvs~e~E~~G-D~~~hg~~ay~~ 449 (488)
+++|++.+||+++|||+.| |.+||||++|++
T Consensus 397 ~il~~~~~lRvs~e~E~~GlD~~~hg~~ay~~ 428 (428)
T PRK10666 397 KLADLTVGLRVPEEQEREGLDVNSHGENAYNA 428 (428)
T ss_pred HHHHhcccCcCCHHHHHhCCChhHhCccccCC
Confidence 9999999999999999999 999999999963
No 4
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=100.00 E-value=1.6e-100 Score=799.84 Aligned_cols=397 Identities=39% Similarity=0.708 Sum_probs=361.7
Q ss_pred hHHHHHHHHHHHHHhhHHHhhhcccccccccHHHHHHHHHHHHHHHHHHHHhhchhhcccC--CCCCcccCCccchhhhh
Q 011335 26 SAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGD--QLLPFWGKGAPALGQKY 103 (488)
Q Consensus 26 ~~w~L~~~~lV~~~m~~GfalleaG~Vr~kn~~~~l~~~~~~~~i~~i~~~~~Gy~laFG~--~~~~fiG~~~~~~~~~~ 103 (488)
+.|+++|++|| ++|||||+++|+|+||+||++|+++||++++++++++||++||+++||+ +.++|+|+.++++
T Consensus 1 ~~w~l~~~~lV-~~M~~Gfalle~G~vr~kn~~n~l~k~~~~~~~~~i~~~~~Gy~lafg~~~~~~~~iG~~~~~~---- 75 (403)
T TIGR00836 1 TAWLLIAAALV-FFMQPGFALLYAGLVRSKNVLNIMMKNLLDFAIGSLLWWLFGYSLAFGEDNPINGFIGTGGFGL---- 75 (403)
T ss_pred ChHHHHHHHHH-HHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhhheehHHHHhCCCCCCCCCcCchHHhh----
Confidence 57999999999 9999999999999999999999999999999999999999999999998 4578999764321
Q ss_pred hcccCCCCCCccccCCccccCCcchhHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhhcccceee-c
Q 011335 104 LVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLW-G 182 (488)
Q Consensus 104 ~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~fq~~Faa~a~~I~sGavaeR~~~~~~~i~~~l~~~~vY~v~ahwvW-~ 182 (488)
... ..+ .. ....+.+|...+++||++||++|++|++|+++||+|+.+|++|+++|++++|||++||+| +
T Consensus 76 --~~~--~~~-----~~-~~~~~~~~~~~~~~fq~~Fa~~t~~I~sGavaeR~~~~~~~v~~~~~~~~vY~~~ahwvW~~ 145 (403)
T TIGR00836 76 --KNF--LYP-----GK-ISLAGTLPDLLFFLFQMMFAAIAATIISGAVAERMKFSAYLLFSVLWTTLVYPPVAHWVWGG 145 (403)
T ss_pred --ccC--Ccc-----cc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccceeecC
Confidence 111 000 00 001234788999999999999999999999999999999999999999999999999999 5
Q ss_pred cchhhcccceeccCCeeehhhhHHHHHHHHHHHccCCCCC--CCCCCCCcHHHHHHHHHHHHHhhhhhcCCcccccchhh
Q 011335 183 GGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSD--KERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIAS 260 (488)
Q Consensus 183 ~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~~~~--~~~~~~~s~~~~~lGt~lLw~gW~gFN~gs~~~~~~~~ 260 (488)
+|||+++|++|||||++||++||++||++++++|||++|+ +++++|||++++++|+++||+||+|||+||++..++.+
T Consensus 146 ~GwL~~lG~~DfAG~~vVH~~gG~~~L~~a~~LGpR~~r~~~~~~~~~~n~~~~~lGt~lLw~gW~gFN~Gs~~~~~~~~ 225 (403)
T TIGR00836 146 GGWLYKLGVLDFAGGGVVHIVGGVAGLAAALVLGPRIGRFPRPVAIRPHNVPLVVLGTFILWFGWFGFNAGSALAANGTA 225 (403)
T ss_pred CchhhccCcchhcCceeEecchhHHHHHHHHHhcCCCCCCcCcCCCCCCCHHHHHHHHHHHHHHHhcccchhhcccchHH
Confidence 9999999999999999999999999999999999999987 67889999999999999999999999999998888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhhhhcccceeccCCCCcchHHHHHHHHhhhhHHHHHHHHHHhhhc
Q 011335 261 SIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCS 340 (488)
Q Consensus 261 ~~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LAGlVaIta~a~~v~pw~A~iiG~iag~i~~~~~~~l~~~l~ 340 (488)
.++++||++|+++|+++|++++++.+||+|+.+++||+|||||+|||+|++++||+|++||+++|++|+++.++++++
T Consensus 226 ~~a~~nT~lA~a~g~l~~~~~~~~~~gk~~~~~~~nG~LAGLVaita~a~~v~p~~A~viG~iag~~~~~~~~~l~~~-- 303 (403)
T TIGR00836 226 AYAAVNTNLAAAAGGLTWLLIDWLKHGKPTLLGACNGILAGLVAITPGCGVVTPWGAIIIGLVAGVLCYLAVSKLKKK-- 303 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHhhhhhhheeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876654
Q ss_pred cccccccccccccccchhhhHhhhhhhhccCccccccCCCCCCCccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011335 341 LLQQVDDTLAVFHTHAVTGLLGGLLTGLFAEPQLCKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLA 420 (488)
Q Consensus 341 ~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~Gl~~g~~~~~ql~~Ql~g~~v~~~ws~~~~~i~~~~ 420 (488)
+|||||||++++||+||+||++++|+|++++.... ..|.++++ +..|++.|++|++++++|+++.+++++++
T Consensus 304 --~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~~~~~~-----~~g~~~~~-~~~~l~~Ql~g~~~~~~~s~~~~~ii~~i 375 (403)
T TIGR00836 304 --LKIDDPLDAFAVHGVGGIWGLIATGLFAAPKVGGV-----GTGGLLGG-NGKQLGVQLIGIAAIIAWAFVVTFIILKI 375 (403)
T ss_pred --cCCCCCcccchhhhhhHHHHHHHHHHhcccccccc-----cCCccccC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999998764321 12444554 67999999999999999999999999999
Q ss_pred HHHhcCCCCChHHhhcC-ChhhhCcccc
Q 011335 421 IRIFIPLRMPEEQLAIG-DDAVHGEEAY 447 (488)
Q Consensus 421 l~~~~~lRvs~e~E~~G-D~~~hg~~ay 447 (488)
+||+.+||+++|||+.| |..||||++|
T Consensus 376 l~~~~~lRv~~e~E~~GlD~~~hg~~ay 403 (403)
T TIGR00836 376 LDKTIGLRVSEEEEKIGLDLAEHGEFAY 403 (403)
T ss_pred HHhcccccCCHHHHHhCCChhhhCcccC
Confidence 99999999999999999 9999999998
No 5
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=100.00 E-value=1.5e-99 Score=791.51 Aligned_cols=388 Identities=28% Similarity=0.473 Sum_probs=346.7
Q ss_pred cchHHHHHHHHHHHHHhhHHHhhhcccccccccHHHHHHHHHHHHHHHHHHHHhhchhhcccCCC---CCcccCCccchh
Q 011335 24 GDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQL---LPFWGKGAPALG 100 (488)
Q Consensus 24 ~d~~w~L~~~~lV~~~m~~GfalleaG~Vr~kn~~~~l~~~~~~~~i~~i~~~~~Gy~laFG~~~---~~fiG~~~~~~~ 100 (488)
.|+.|+++|++|| ++|||||+|+|+|+||+||++|+++||++++++++++||++||+++||++. ++++|.
T Consensus 3 ~d~~w~l~~~~LV-~~M~~Gfalle~G~vr~Kn~~n~l~k~~~~~~~~~l~w~~~Gy~lafg~~~~~~~g~~g~------ 75 (404)
T TIGR03644 3 LDTFYFLISGALV-MWMAAGFAMLEAGLVRSKNTTEILTKNIALFAIACIMYLLVGYNIMYPGGGIFLGGILGS------ 75 (404)
T ss_pred ccHHHHHHHHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCcchh------
Confidence 5999999999999 999999999999999999999999999999999999999999999999762 233331
Q ss_pred hhhhcccCCCCCCccccCCccccCCcchhHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhhccccee
Q 011335 101 QKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSL 180 (488)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~fq~~Faa~a~~I~sGavaeR~~~~~~~i~~~l~~~~vY~v~ahwv 180 (488)
+.........+ ..... ..+..+|...+++||++||+++++|++|+++||+|+.+|++|+++|++++|||++||+
T Consensus 76 --f~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~Fq~~Fa~~a~~IvsGavaeR~~~~~~~v~~~~~~~~vY~~~ahW~ 149 (404)
T TIGR03644 76 --FLLGADNPVGD--LIAGF--EGDADYSSGSDFFFQVVFVATAMSIVSGAVAERMKLWPFLLFAVVLTGFIYPIEGSWT 149 (404)
T ss_pred --hhhcccccccc--ccccc--ccccCccHHHHHHHHHHHHHHHHHHHHhHhhhcccHHHHHHHHHHHHHHHHhhhhhhe
Confidence 11110000000 00000 0122366778899999999999999999999999999999999999999999999999
Q ss_pred eccchhhcccceeccCCeeehhhhHHHHHHHHHHHccCCCCC-C----CCCCCCcHHHHHHHHHHHHHhhhhhcCCcccc
Q 011335 181 WGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSD-K----ERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYA 255 (488)
Q Consensus 181 W~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~~~~-~----~~~~~~s~~~~~lGt~lLw~gW~gFN~gs~~~ 255 (488)
|++|||+++|++|||||++||++||++||++++++|||++|+ + +++||||++++++|+++||+||+|||+||++.
T Consensus 150 W~~GwL~~lG~~DfAG~~vVH~~gG~~aL~~a~~LgpR~gr~~~~~~~~~~~~~n~~~~~lG~~iLw~gW~gFN~gs~l~ 229 (404)
T TIGR03644 150 WGGGWLDDLGFSDFAGSGIVHMAGAAAALAGVLLLGPRKGKYGKNGEVNPIPGSNLPLATLGTFILWMGWFGFNGGSQLA 229 (404)
T ss_pred eCchHHhhcCchhhcCceEEecchHHHHHHHHheeccCCCCCccCCCcCCCCCCCHHHHHHHHHHHHHHHHhhcchhhhh
Confidence 988999999999999999999999999999999999999875 2 25789999999999999999999999999876
Q ss_pred cch-----hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhhhhcccceeccCCCCcchHHHHHHHHhhhhHHHH
Q 011335 256 AHI-----ASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWV 330 (488)
Q Consensus 256 ~~~-----~~~~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LAGlVaIta~a~~v~pw~A~iiG~iag~i~~~ 330 (488)
.+. ...++++||++|+++|+++|++++++++||+|+.+++||+|||||+|||+|++++||+|++||+++|++|++
T Consensus 230 ~~~~~~~~~~~~a~~NT~la~a~g~l~~~~~~~~~~gk~~~~~~~nG~LAGLVaITa~~~~v~p~~A~iiG~iag~v~~~ 309 (404)
T TIGR03644 230 LSDVADANAVARIFANTNAAAAGGAIAALLLTKLLFGKADLTMVLNGALAGLVAITAEPLTPSPLAATLIGAVGGVIVVF 309 (404)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhhhhccccCCCCHHHHHHHHHHHHHHHHH
Confidence 553 358999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccccccccccccccccchhhhHhhhhhhhccCccccccCCCCCCCccccCCcchHHHHHHHHHHHHHHHHH
Q 011335 331 TMMILHKKCSLLQQVDDTLAVFHTHAVTGLLGGLLTGLFAEPQLCKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWN 410 (488)
Q Consensus 331 ~~~~l~~~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~Gl~~g~~~~~ql~~Ql~g~~v~~~ws 410 (488)
+.++++ |+|||||||++++||+||+||++++|+|+. ..|++.|++|++++++|+
T Consensus 310 ~~~~~~-----~~~iDD~~~~~~vHg~~Gi~G~i~~glf~~---------------------~~~l~~Ql~g~~~~~~~~ 363 (404)
T TIGR03644 310 SIVLLD-----KLKIDDPVGAISVHGVAGIWGTLVVPITNG---------------------DASFGAQLIGAATIFAWV 363 (404)
T ss_pred HHHHHH-----hCCCCCCcCchHhhhHHHHHHHHHHHHhcc---------------------chHHHHHHHHHHHHHHHH
Confidence 988654 379999999999999999999999999962 158999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCChHHhhcC-ChhhhCccccccc
Q 011335 411 LVSTTIILLAIRIFIPLRMPEEQLAIG-DDAVHGEEAYALW 450 (488)
Q Consensus 411 ~~~~~i~~~~l~~~~~lRvs~e~E~~G-D~~~hg~~ay~~~ 450 (488)
++.++++++++|++.+||+++|||++| |.+||||++|||+
T Consensus 364 ~~~s~~~~~il~~~~~lRv~~e~E~~GlD~~~hg~~ay~e~ 404 (404)
T TIGR03644 364 FVTSLIVWFILKATMGIRVSEEEEYEGLDIAECGMEAYPEF 404 (404)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHcCCCHHHhCcccCCCC
Confidence 999999999999999999999999999 9999999999873
No 6
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=100.00 E-value=1e-92 Score=744.37 Aligned_cols=390 Identities=35% Similarity=0.633 Sum_probs=339.2
Q ss_pred HHHHHHHHHHHHHhhHHHhhhcccccccccHHHHHHHHHHHHHHHHHHHHhhchhhcccCC--CCCcccCCccchhhhhh
Q 011335 27 AWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQ--LLPFWGKGAPALGQKYL 104 (488)
Q Consensus 27 ~w~L~~~~lV~~~m~~GfalleaG~Vr~kn~~~~l~~~~~~~~i~~i~~~~~Gy~laFG~~--~~~fiG~~~~~~~~~~~ 104 (488)
+|+++|+++| ++|||||+++|+|.+|+||++|+++|++.++++++++||++||+++||++ .++++|+..+.. ..
T Consensus 1 ~w~l~~~~lv-~~m~~G~~~l~~G~vr~kn~~~~~~~~~~~~~~~~~~~~~~Gf~lafg~~~~~~~~~g~~~~~~---~~ 76 (399)
T PF00909_consen 1 AWLLLCAFLV-FLMQPGFALLEAGLVRSKNAVNILYKNLIDVAVVVMIWFLFGFSLAFGKRYGFSGFIGNLGFSA---FG 76 (399)
T ss_dssp HHHHHHHHHH-HHHCCHHHHHHHCCS-GGGHHHHHHHHHHHHHHHHHHHHHCHHHHHHSTT-HHHHHHHHHCHHH---HH
T ss_pred CHHHHHHHHH-HHhhccHHHhhCCCcCchHHHHHHHHHHHHHHHHHHHHHhhhhheeecCCcccCceeecccccc---cc
Confidence 5999999999 99999999999999999999999999999999999999999999999997 355666421100 00
Q ss_pred cccCCCCCCccccCCccccCCcchhHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhhcccceee-cc
Q 011335 105 VGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLW-GG 183 (488)
Q Consensus 105 ~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~fq~~Faa~a~~I~sGavaeR~~~~~~~i~~~l~~~~vY~v~ahwvW-~~ 183 (488)
. ....+|...+++||++||+++++|++|+++||+|+.+|++|+++|+.++||+++||+| ++
T Consensus 77 ~------------------~~~~~~~~~~~~fq~~fa~~~~~I~sgavaeR~~~~~~ii~~~l~~~~vy~~~~~w~w~~~ 138 (399)
T PF00909_consen 77 F------------------QWANIPQGVFFLFQLAFAAIAATIVSGAVAERIKFSAYIIFGFLWGGLVYPPLAHWVWGEN 138 (399)
T ss_dssp H------------------HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCTHHHHHHHHHCHC
T ss_pred c------------------hhccccccchhhhhhccceEEEccccceeeceeeehHHHHHHHHHhhhhccccceEEEecc
Confidence 0 0123556678999999999999999999999999999999999999999999999999 59
Q ss_pred chhhcccce-eccCCeeehhhhHHHHHHHHHHHccCCCCC---CCCCCCCcHHHHHHHHHHHHHhhhhhcCCcccccchh
Q 011335 184 GFLYQWGVI-DYSGGYVIHVSSGIAGLTAAYWVGPRLKSD---KERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIA 259 (488)
Q Consensus 184 GwL~~lG~~-DfaG~~vVH~~gG~~gL~~a~~lG~R~~~~---~~~~~~~s~~~~~lGt~lLw~gW~gFN~gs~~~~~~~ 259 (488)
|||.++|.+ ||+||++||++||++||++++++|||++|+ +++++|||++++++|+++||+||+|||+||++..+++
T Consensus 139 Gwl~~~g~~~DfaG~~vVH~~gG~~gL~~a~~lg~R~~~~~~~~~~~~~~s~~~~~lG~~lLw~gW~gFN~gs~~~~~~~ 218 (399)
T PF00909_consen 139 GWLAQLGFLIDFAGSGVVHLFGGVFGLAAAIVLGPRRGRFDGKPNPIPPHSPPLAMLGTLLLWFGWFGFNAGSALAANGR 218 (399)
T ss_dssp HHHHHCCHH--TT-TTTTHHHHHHHHHHHHHHH--CTTTTGTTTSS--HCHHHHHHHHHHHHHHHHHHHHHCCGSSSSHH
T ss_pred hhhccCccCCCCccceeeehhhhHHHHhhheeeCCCCCcccccccCCCCCcHHHhhhhHHHHHHHhcccccccccccCCc
Confidence 999999999 999999999999999999999999999986 6788999999999999999999999999999998887
Q ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhhhhcccceeccCCCCcchHHHHHHHHhhhhHHHHHHHHHHhh
Q 011335 260 SSI-AILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKK 338 (488)
Q Consensus 260 ~~~-a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LAGlVaIta~a~~v~pw~A~iiG~iag~i~~~~~~~l~~~ 338 (488)
+.. +++||++|+++|+++|++++++.+||+|+.+++||+|||+|||||+|++++||+|+++|+++|.+|+++++++++|
T Consensus 219 ~~~~~~~nT~la~a~g~l~~~~~~~~~~gk~~~~~~~nG~laGlVaita~~~~v~p~~A~~iG~iag~i~~~~~~~l~~~ 298 (399)
T PF00909_consen 219 AWLRAAVNTLLAAAAGGLTWLLISYLLSGKWSMVGICNGALAGLVAITAGAGYVTPWGALLIGAIAGLISYFGVSWLLKR 298 (399)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHTTTTTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhHHHHHHHHHHhhhccccccchhhhhhhhhhhhhheecccCCCcHHHHHHhhhhHhhhhhhheecccce
Confidence 776 9999999999999999999999999999999999999999999999999999999999999999999999855554
Q ss_pred hccccccccccccccccchhhhHhhhhhhhccCccccccCCCCCCCccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011335 339 CSLLQQVDDTLAVFHTHAVTGLLGGLLTGLFAEPQLCKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIIL 418 (488)
Q Consensus 339 l~~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~Gl~~g~~~~~ql~~Ql~g~~v~~~ws~~~~~i~~ 418 (488)
+|||||||++++||+||+||++++++|+.++... .+...+.+++ +.+|++.|+++++++++|+++.+++++
T Consensus 299 ----~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~~~~~---~~~~~~~~~~--~~~~l~~Ql~g~~~~~~~~~~~s~i~~ 369 (399)
T PF00909_consen 299 ----LKIDDPVGAFAVHGVGGIWGTILTGLFASPEVNY---SDGYGGLFYG--NGRQLGIQLLGIVVILAWSFVVSYIIF 369 (399)
T ss_dssp ----HTS-HTTGHHHHCHHHHHHHHHHHHHHCCCHHCS---S-SSTTHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----eEeccccceEeeeeccHHHHHHHHHHHhcccccc---ccccccccCC--chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999987541 1123456666 458999999999999999999999999
Q ss_pred HHHHHhcCCCCChHHhhcC-ChhhhCcccc
Q 011335 419 LAIRIFIPLRMPEEQLAIG-DDAVHGEEAY 447 (488)
Q Consensus 419 ~~l~~~~~lRvs~e~E~~G-D~~~hg~~ay 447 (488)
+++|++.+||+++|||++| |.+||||+||
T Consensus 370 ~~l~~~~~LRv~~~~E~~GlD~~~hg~~aY 399 (399)
T PF00909_consen 370 KILKKFGGLRVSEEDERVGLDLSEHGEEAY 399 (399)
T ss_dssp HHHHHHT-SB--HHHHHH-HHHHHHS--SB
T ss_pred HHHHhccccCCCHHHHhhCCCHHHhCcCcC
Confidence 9999999999999999999 9999999999
No 7
>KOG3796 consensus Ammonium transporter RHBG [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=1.2e-52 Score=419.31 Aligned_cols=391 Identities=20% Similarity=0.270 Sum_probs=302.9
Q ss_pred HHhhHHHhhhcccccccc----------cHHHHHHHHHHHHHHH-HHHHHhhchhhcccCCCCCcccCCccchhhhhhcc
Q 011335 38 IQSMPGLLIIYASIVKKK----------WAVNSAFMVLYAFAAV-LICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVG 106 (488)
Q Consensus 38 ~~m~~GfalleaG~Vr~k----------n~~~~l~~~~~~~~i~-~i~~~~~Gy~laFG~~~~~fiG~~~~~~~~~~~~~ 106 (488)
+++|.-|+++.+=+||++ +..|.+...+..+.++ +++|..+||.++|-+++ +|-......+-..+-++
T Consensus 18 l~lq~~~ivLF~~fv~Yd~~al~~~t~~~~~~~~~~~Yp~fQDvhvMifiGfGFLmtflrRy-gfSsV~fnlllaA~~vQ 96 (442)
T KOG3796|consen 18 LLLQAAFIVLFALFVHYDADALEWDTKRYDQKGLVASYPLFQDVHVMIFIGFGFLMTFLRRY-GFSSVGFNLLLAALGVQ 96 (442)
T ss_pred HHHHHHHHHHHHHHhhccccccccccccccccchhhccccccceeehhhhhHHHHHHHHHHc-cchHHHHHHHHHHHHHH
Confidence 557777888888888874 2346667789999988 89999999999999886 22211111111123344
Q ss_pred cCCCCCC--ccccCCccccCCcchhHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhhcccceeeccc
Q 011335 107 RARVPES--THEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGG 184 (488)
Q Consensus 107 ~~~~~~~--~~~~~g~~~~~~~~~p~~~~~~fq~~Faa~a~~I~sGavaeR~~~~~~~i~~~l~~~~vY~v~ahwvW~~G 184 (488)
|+.+-++ +.+.+|++. .-.+-+..++||+.++.|+.||+++|+++.|+++++++..++ .-...| =
T Consensus 97 WaiL~~G~~~~~~~gk~~-------i~le~ii~Ad~saa~vLIS~gAvLGk~sp~QlliM~~fEv~~-~~~~e~-----v 163 (442)
T KOG3796|consen 97 WAILLDGFLSQFPGGKFV-------IGLESIILADFSAASVLISMGAVLGKVSPAQLLIMALFEVTA-FGINEM-----V 163 (442)
T ss_pred HHHHHHHHHHhCCCCeEE-------EEeHHHhhhhHhHhHHhhhhchhhcCCCHHHHHHHHHHHHHH-HHHHHH-----H
Confidence 5544333 123345532 223446789999999999999999999999999999875443 222222 2
Q ss_pred hhhcccceeccCCeeehhhhHHHHHHHHHHHccCCCC---CCCCCCCCcHHHHHHHHHHHHHhhhhhcCCcccccchhhH
Q 011335 185 FLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKS---DKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASS 261 (488)
Q Consensus 185 wL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~~~---~~~~~~~~s~~~~~lGt~lLw~gW~gFN~gs~~~~~~~~~ 261 (488)
-++.+++.|.+|++.||.+|+++||+++++++|+..+ +|+...+|++.++++|+++||+.||+||+..+.. ++.+.
T Consensus 164 ~~n~~~v~d~g~smtih~FgAYFGLavA~~l~k~~~~~~~~~~gs~y~sdLfAMIGtlFLWmfWPSFNsal~~~-~~~r~ 242 (442)
T KOG3796|consen 164 ISNIFNVNDHGGSMTIHAFGAYFGLAVAWCLYKPNLEGTTENEGSAYHSDLFAMIGTLFLWMFWPSFNSALARS-GDARH 242 (442)
T ss_pred HHHhccccccCCceEEEehhhhhhhhHhhhccCccccccccccCceecchHHHHHHHHHHHHhccccchhhhcC-chhhH
Confidence 3456889999999999999999999999999887554 3566778999999999999999999999976543 56679
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hcCCCHHHHhhhhhcccceeccCCC-CcchHHHHHHHHhhhhHHHHHHHHHHhh
Q 011335 262 IAILNTNVAAATSLLVWTCLDVIF--FGKPSVIGAVQGMMTGLVCITPGAG-LVQSWAAIVMGILSGSIPWVTMMILHKK 338 (488)
Q Consensus 262 ~a~~NT~la~a~g~l~~~~~~~~~--~~k~~~~~~~nG~LAGlVaIta~a~-~v~pw~A~iiG~iag~i~~~~~~~l~~~ 338 (488)
|+++||++|.|++.+|++.++.+. +||.|+++++|.+|||.|||+.+|+ ..+||.|++||++||.+++.+++++.++
T Consensus 243 rAi~NTy~slAa~tvTtf~~Sslv~~~gkldMvhIqnatLAGGVAVGTsa~~~l~P~~AmiiG~iAG~vSvlG~kyltp~ 322 (442)
T KOG3796|consen 243 RAIFNTYLSLAASTVTTFAVSSLVHPQGKLDMVHIQNATLAGGVAVGTSANLILSPYGAMIIGLIAGLVSVLGYKYLTPF 322 (442)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcccCccceEEeecchhcCceeeccchhcccCcHHHHHHHHHHHHHhhccceeechh
Confidence 999999999999999999999888 4799999999999999999999999 7899999999999999999999999999
Q ss_pred hccccccccccccccccchhhhHhhhhhhhccCccccccCCCCCCCcc--ccCC----cchHHHHHHHHHHHHHHHHHHH
Q 011335 339 CSLLQQVDDTLAVFHTHAVTGLLGGLLTGLFAEPQLCKLTLPEPTRGA--FYGG----KGGVQFLKQIVGALFVIAWNLV 412 (488)
Q Consensus 339 l~~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~Gl--~~g~----~~~~ql~~Ql~g~~v~~~ws~~ 412 (488)
+++++||+|+|++++.||+||++|.++..+++.-...+ .|+++..-+ .-++ ....|...|+.|+.++++.+.+
T Consensus 323 l~~~l~i~dtcgv~nlhgmpg~l~~~~~i~~a~~~t~e-~yg~~l~~ifp~~~gng~~~~~sQa~~Ql~gl~~~l~~A~~ 401 (442)
T KOG3796|consen 323 LERKLGIHDTCGVHNLHGMPGLLGGIASIVFAVLATPE-SYGKGLYHIFPMIGGNGHGMATSQALYQLFGLLVTLVIALV 401 (442)
T ss_pred hcccccccccccccccccchHHHHHHHHHHHHhhcchh-hcccccccccceecCCCccchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999876322100 011100000 0011 3568999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChHHhhcCChhhhCcccccccc
Q 011335 413 STTIILLAIRIFIPLRMPEEQLAIGDDAVHGEEAYALWG 451 (488)
Q Consensus 413 ~~~i~~~~l~~~~~lRvs~e~E~~GD~~~hg~~ay~~~~ 451 (488)
.++++..+||.-..-.+++++ .|+++.|.+.+
T Consensus 402 gGlLtGllLkl~~w~qp~d~~-------~~~D~vyw~~P 433 (442)
T KOG3796|consen 402 GGLLTGLLLKLKIWDQPSDDE-------YYDDQVYWEVP 433 (442)
T ss_pred hhhhhhheeeccccCCCChhh-------hcccchheeCC
Confidence 999999998854333333332 57777776543
No 8
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=75.21 E-value=38 Score=36.14 Aligned_cols=141 Identities=16% Similarity=0.145 Sum_probs=87.2
Q ss_pred ccccchHHHHHHHHHHHHHhhHHHhhhcccccccccHHH---HHHHHHHHHHHHHHHHHhhchhhcccCCCCCcccCCcc
Q 011335 21 LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVN---SAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAP 97 (488)
Q Consensus 21 ~~~~d~~w~L~~~~lV~~~m~~GfalleaG~Vr~kn~~~---~l~~~~~~~~i~~i~~~~~Gy~laFG~~~~~fiG~~~~ 97 (488)
...-|..+..+.+.++ ++ |.--|.+|.....|... +++..+++.+.+.+.|.++.|-.. ++ .+
T Consensus 185 ~~~~s~~~~~lG~~lL-w~---gW~gFN~gs~~~~~~~~~~~~~~nT~la~a~g~l~~~~~~~~~~-gk--------~~- 250 (399)
T PF00909_consen 185 IPPHSPPLAMLGTLLL-WF---GWFGFNAGSALAANGRAWLRAAVNTLLAAAAGGLTWLLISYLLS-GK--------WS- 250 (399)
T ss_dssp --HCHHHHHHHHHHHH-HH---HHHHHHHCCGSSSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC-SS-----------
T ss_pred CCCCcHHHhhhhHHHH-HH---HhcccccccccccCCccchhhhhhhhhhHHHHHHHHHHhhhccc-cc--------cc-
Confidence 3344667777777655 43 55666778877777664 456667888888888877755332 11 00
Q ss_pred chhhhhhcccCCCCCCccccCCccccCCcchhHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhhccc
Q 011335 98 ALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGA 177 (488)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~fq~~Faa~a~~I~sGavaeR~~~~~~~i~~~l~~~~vY~v~a 177 (488)
...+.+...|.. ....+-+.-+++.+-++.+++ ++.++....
T Consensus 251 ----------------------------------~~~~~nG~laGl---Vaita~~~~v~p~~A~~iG~i-ag~i~~~~~ 292 (399)
T PF00909_consen 251 ----------------------------------MVGICNGALAGL---VAITAGAGYVTPWGALLIGAI-AGLISYFGV 292 (399)
T ss_dssp ----------------------------------HHHHHHHHHHHH---HHHTTTTTTS-HHHHHHHHHH-HHHHHHHHH
T ss_pred ----------------------------------hhhhhhhhhhhh---hheecccCCCcHHHHHHhhhh-Hhhhhhhhe
Confidence 011223333333 333444577888888888865 444444333
Q ss_pred ceeeccchhhcccceeccCCeeehhhhHHHHHHHHHHHccC
Q 011335 178 FSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPR 218 (488)
Q Consensus 178 hwvW~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R 218 (488)
.| +++++++.|.-+...||..+|+.|...+-+.-.+
T Consensus 293 ~~-----l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~ 328 (399)
T PF00909_consen 293 SW-----LLKRLKIDDPVGAFAVHGVGGIWGTILTGLFASP 328 (399)
T ss_dssp HH-----HHHHHTS-HTTGHHHHCHHHHHHHHHHHHHHCCC
T ss_pred ec-----ccceeEeccccceEeeeeccHHHHHHHHHHHhcc
Confidence 32 4568899999999999999999999988766554
No 9
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=66.96 E-value=7.1 Score=39.82 Aligned_cols=87 Identities=11% Similarity=0.003 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHhc-----CCCHHHHhhhhhcccceeccCCC--------CcchHHHHHHHHhhhhHHHHHHHHH
Q 011335 269 VAAATSLLVWTCLDVIFFG-----KPSVIGAVQGMMTGLVCITPGAG--------LVQSWAAIVMGILSGSIPWVTMMIL 335 (488)
Q Consensus 269 la~a~g~l~~~~~~~~~~~-----k~~~~~~~nG~LAGlVaIta~a~--------~v~pw~A~iiG~iag~i~~~~~~~l 335 (488)
+..-++=..+++..+...| |.|+.-.-+|.++|.++.+..+. ..+++..+++|++.++.+.++- ..
T Consensus 159 ~~vw~sDt~AYf~Gr~fGk~KL~P~ISPkKTwEG~iGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GD-L~ 237 (285)
T PRK11624 159 ILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWEGFIGGLATAAVISWLFGMWAPLDVAPVTLLICSIVAALASVLGD-LT 237 (285)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCcCCCCCchhhhHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHhH-HH
Confidence 3334444455565555533 34777777777777765443321 1356778899999988888885 46
Q ss_pred Hhhhccccccccccccccccc
Q 011335 336 HKKCSLLQQVDDTLAVFHTHA 356 (488)
Q Consensus 336 ~~~l~~~l~IDD~~~v~~vHg 356 (488)
+..+|++.++.|--..+|=||
T Consensus 238 ES~lKR~~gVKDSG~llPGHG 258 (285)
T PRK11624 238 ESMFKREAGIKDSGHLIPGHG 258 (285)
T ss_pred HHHHhhccCCCCCcCcCCCcC
Confidence 777888999999999999998
No 10
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=66.28 E-value=7.6 Score=37.83 Aligned_cols=67 Identities=13% Similarity=0.177 Sum_probs=49.8
Q ss_pred CCHHHHhhhhhcccceeccCCC--------C-cchHHHHHHHHhhhhHHHHHHHHHHhhhccccccccccccccccc
Q 011335 289 PSVIGAVQGMMTGLVCITPGAG--------L-VQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHA 356 (488)
Q Consensus 289 ~~~~~~~nG~LAGlVaIta~a~--------~-v~pw~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg 356 (488)
.++.....|.++|.++....+- . .++|.+++++++++++..++- ..+..+|+..+|-|--+.+|=||
T Consensus 161 ~sp~KT~EGsi~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gd-l~~S~~KR~~~iKD~g~lipghG 236 (259)
T PF01148_consen 161 ISPKKTWEGSIAGFISSFIISFLLLYYLSSFFLSWWQAILISLLASIVEAFGD-LFESAIKRDAGIKDSGNLIPGHG 236 (259)
T ss_pred CCCCCCHHHHhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhcccccccccCcC
Confidence 3455566666666665444432 1 578999999999999988875 45666788899999999999988
No 11
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=66.23 E-value=34 Score=29.24 Aligned_cols=59 Identities=20% Similarity=0.124 Sum_probs=39.5
Q ss_pred cCC-CHHHHhhhhhcccceeccCCCCcchHHHHHHHHhhhhHHHHHHHHHHhhhcccccccc
Q 011335 287 GKP-SVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDD 347 (488)
Q Consensus 287 ~k~-~~~~~~nG~LAGlVaIta~a~~v~pw~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD 347 (488)
.|+ ....+.-|++.|+++. ...+-.+.+..+.-|.++|+..........|+- +|.+=||
T Consensus 33 ~K~iPlIs~viGilLG~~~~-~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r~-~~~~e~~ 92 (93)
T PF06946_consen 33 NKWIPLISVVIGILLGAAAY-PLTGDGNLALMAWAGGLAGLAATGLFEQFTNRS-KKYGEDD 92 (93)
T ss_pred cchhhHHHHHHHHHHHHHhh-hcCCCccHHHHHHHHHHhhhhhhhHHHHHHhhh-hhcCcCC
Confidence 344 5667888999998873 222233667777779999988887777777653 3345455
No 12
>PLN02594 phosphatidate cytidylyltransferase
Probab=55.67 E-value=7.9 Score=40.54 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=36.7
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhccccccccccccccccc
Q 011335 314 SWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHA 356 (488)
Q Consensus 314 pw~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg 356 (488)
.+.++++|++++++..+|- +....+|+.+||-|--+.+|=||
T Consensus 235 ~~h~l~l~l~aSl~a~fGd-lfaS~~KR~~~IKDfG~~IPGHG 276 (342)
T PLN02594 235 QWHALSLGLFASIIAPFGG-FFASGFKRAFKIKDFGDSIPGHG 276 (342)
T ss_pred HHHHHHHHHHHHHHHHhhh-HHHHHHHHccCCCcccCccCCCc
Confidence 5889999999999999885 45667788899999999999998
No 13
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=48.62 E-value=91 Score=29.61 Aligned_cols=31 Identities=16% Similarity=0.490 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011335 395 QFLKQIVGALFVIAWNLVSTTIILLAIRIFI 425 (488)
Q Consensus 395 ql~~Ql~g~~v~~~ws~~~~~i~~~~l~~~~ 425 (488)
...-|++|+++..+.|++.+++...++||+.
T Consensus 66 t~~G~~igi~~~gv~Si~aAllY~~~l~k~~ 96 (173)
T PF11085_consen 66 TWLGNLIGIVFIGVFSIVAALLYYALLKKFK 96 (173)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566999999999999999999999999873
No 14
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=44.50 E-value=23 Score=35.61 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcC-----CCHHHHhhhhhcccceeccCCCC---------cchHHHHHHHHhhhhHHHHHHHHHHhhhcc
Q 011335 276 LVWTCLDVIFFGK-----PSVIGAVQGMMTGLVCITPGAGL---------VQSWAAIVMGILSGSIPWVTMMILHKKCSL 341 (488)
Q Consensus 276 l~~~~~~~~~~~k-----~~~~~~~nG~LAGlVaIta~a~~---------v~pw~A~iiG~iag~i~~~~~~~l~~~l~~ 341 (488)
+.+.+..+...|+ .|+.-.+.|.+.|.+..+..+.. .++|..++++++.++++.++- ..+..+|+
T Consensus 148 i~Ayf~Gr~fGk~kl~p~iSP~KT~eGfigG~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~lGD-L~eS~iKR 226 (265)
T COG0575 148 IGAYFVGRRFGKHKLAPKISPKKTWEGFIGGALGAVLVAVLVIFLLSSLILNIWTLLILGLLLVLTSQLGD-LFESYIKR 226 (265)
T ss_pred hhHHHHHHHcCCCCCCCcCCCCCchHHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh-HHHHHHHH
Confidence 3345555555443 57777788888876665444431 235888899999999888774 45667788
Q ss_pred ccccccccccccccc
Q 011335 342 LQQVDDTLAVFHTHA 356 (488)
Q Consensus 342 ~l~IDD~~~v~~vHg 356 (488)
++|+-|--...|=||
T Consensus 227 ~~gvKDsg~liPGHG 241 (265)
T COG0575 227 LLGIKDSGWLIPGHG 241 (265)
T ss_pred ccCCCCcCCCCCCcC
Confidence 899999889999888
No 15
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=42.12 E-value=4.7e+02 Score=28.13 Aligned_cols=139 Identities=13% Similarity=0.075 Sum_probs=79.2
Q ss_pred ccchHHHHHHHHHHHHHhhHHHhhhcccccccccH--HHHHHHHHHHHHHHHHHHHhhchhhcccCCCCCcccCCccchh
Q 011335 23 KGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWA--VNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALG 100 (488)
Q Consensus 23 ~~d~~w~L~~~~lV~~~m~~GfalleaG~Vr~kn~--~~~l~~~~~~~~i~~i~~~~~Gy~laFG~~~~~fiG~~~~~~~ 100 (488)
.-|..+.++.+.++ ++ |.--|.+|+....|. ..+++...++.+.+.+.|.++-|.. .++-. ..+
T Consensus 193 ~~n~~~~~lGt~lL-w~---gW~gFN~Gs~~~~~~~~~~a~~nT~lA~a~g~l~~~~~~~~~-~gk~~--~~~------- 258 (403)
T TIGR00836 193 PHNVPLVVLGTFIL-WF---GWFGFNAGSALAANGTAAYAAVNTNLAAAAGGLTWLLIDWLK-HGKPT--LLG------- 258 (403)
T ss_pred CCCHHHHHHHHHHH-HH---HHhcccchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCC--HHH-------
Confidence 44667777777555 43 555567777654443 3566677888888888888776532 22100 000
Q ss_pred hhhhcccCCCCCCccccCCccccCCcchhHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhhccccee
Q 011335 101 QKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSL 180 (488)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~fq~~Faa~a~~I~sGavaeR~~~~~~~i~~~l~~~~vY~v~ahwv 180 (488)
+.+ .+.+-.....+-++-.++..-++..++=+. ++.....+
T Consensus 259 ----------------------------------~~n---G~LAGLVaita~a~~v~p~~A~viG~iag~-~~~~~~~~- 299 (403)
T TIGR00836 259 ----------------------------------ACN---GILAGLVAITPGCGVVTPWGAIIIGLVAGV-LCYLAVSK- 299 (403)
T ss_pred ----------------------------------HHh---hhhhhheeecCCCCCCCHHHHHHHHHHHHH-HHHHHHHH-
Confidence 000 111111222222344556665565544322 32222211
Q ss_pred eccchhhcccceeccCCeeehhhhHHHHHHHHHHHccC
Q 011335 181 WGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPR 218 (488)
Q Consensus 181 W~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R 218 (488)
..+++++.|.-+...||..+|+.|...+-++.++
T Consensus 300 ----l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~ 333 (403)
T TIGR00836 300 ----LKKKLKIDDPLDAFAVHGVGGIWGLIATGLFAAP 333 (403)
T ss_pred ----HHHHcCCCCCcccchhhhhhHHHHHHHHHHhccc
Confidence 2357889999999999999999998888776543
No 16
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=41.69 E-value=1e+02 Score=34.60 Aligned_cols=51 Identities=20% Similarity=0.630 Sum_probs=30.8
Q ss_pred hcCCCHHHHhhhhhcccceeccCCCCcchHHHHHHHHhhhhHHHHHHHHHHhhhccccccccccc
Q 011335 286 FGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLA 350 (488)
Q Consensus 286 ~~k~~~~~~~nG~LAGlVaIta~a~~v~pw~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~ 350 (488)
-+|+ .+.-|.++|++|...+++++ ++++.|+++|-+. ++++| +.|+-+.+.
T Consensus 294 a~rp---glapg~i~g~~a~~~~~GFl---G~Ilag~lagyv~----~~l~K----~~~lP~~l~ 344 (563)
T PRK10712 294 ADRP---GLTPGLIGGMLAVSTGSGFI---GGIIAGFLAGYVA----KLIST----KLKLPQSME 344 (563)
T ss_pred cCCc---cchHHHHHHHHHhcCCchHH---HHHHHHHHHHHHH----HHHHH----hccCcHHHH
Confidence 4565 66789999988877765543 5666666655443 33333 245666555
No 17
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=37.26 E-value=94 Score=29.90 Aligned_cols=111 Identities=18% Similarity=0.252 Sum_probs=53.3
Q ss_pred CcHHHHHHHHHHHHHhhhhhcCCcccccc--hhhHHHHHHHHHHHHHHHHHHHHHH-HHHh-----cCCCHHH-Hh----
Q 011335 229 NNVLLMLAGAGLLWMGWSGFNGGAPYAAH--IASSIAILNTNVAAATSLLVWTCLD-VIFF-----GKPSVIG-AV---- 295 (488)
Q Consensus 229 ~s~~~~~lGt~lLw~gW~gFN~gs~~~~~--~~~~~a~~NT~la~a~g~l~~~~~~-~~~~-----~k~~~~~-~~---- 295 (488)
.+.....+-..+++++.+++-.|...-.+ ......++++.+.+..+++....+. ++.. +|.+... +.
T Consensus 76 ~~~~~~~ld~~L~~~~if~~~~gi~~~f~~~~~~~~gi~tli~~~i~~G~~~~~~~~~i~~~~~~~~r~~~~k~~~~~~~ 155 (206)
T PF06570_consen 76 SNPWLMALDNSLLFFGIFSLLFGIMGFFSPKNSNQYGIITLILVSIVGGLVFYFIFKYIYPYKKKKKRPSWWKYILISVL 155 (206)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHH
Confidence 35566677777777777765555322111 1111255566655555555544444 4442 2322111 11
Q ss_pred -hhhhccc---ceeccCC-C-CcchHHHHHHHHhhhhHHHHHHHHHHhhhcccccccc
Q 011335 296 -QGMMTGL---VCITPGA-G-LVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDD 347 (488)
Q Consensus 296 -nG~LAGl---VaIta~a-~-~v~pw~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD 347 (488)
-...-+. .+.-|.. + .++||.-++||+++-++ .++++|+ ++|.+
T Consensus 156 ~~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~----~~~lkkk----~~i~~ 205 (206)
T PF06570_consen 156 AMVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIAFAL----RFYLKKK----YNITG 205 (206)
T ss_pred HHHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHHHHH----HHHHHHH----hCCCC
Confidence 1111111 1111222 2 67889999999766554 3455554 56653
No 18
>PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the integral membrane protein CbiM, which is involved in cobalamin synthesis, although its exact function in unknown.; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=36.98 E-value=96 Score=29.79 Aligned_cols=85 Identities=24% Similarity=0.177 Sum_probs=43.3
Q ss_pred CCeeehhhhHHHHHHHHHHHccCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhcCCcccccchhhHHHHHHHHHHHHHHH
Q 011335 196 GGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSL 275 (488)
Q Consensus 196 G~~vVH~~gG~~gL~~a~~lG~R~~~~~~~~~~~s~~~~~lGt~lLw~gW~gFN~gs~~~~~~~~~~a~~NT~la~a~g~ 275 (488)
++..+|..|.. ..++++||+. .....+..+-+...-|..|.- ..-=+|+...+....
T Consensus 61 ~g~s~Hllg~~---l~~l~lGp~~-------------a~~~~~~vll~qal~fg~gg~-------~~lG~N~l~m~~~~~ 117 (205)
T PF01891_consen 61 GGLSVHLLGLT---LLTLMLGPWL-------------AALAMAIVLLLQALLFGDGGW-------TALGANALNMGVPPV 117 (205)
T ss_pred CCchHHHhHHH---HHHHHHhHHH-------------HHHHHHHHHHHHHHHHhcCcH-------HHHHHHHHHHHHHHH
Confidence 77999998875 4677899872 233344444444443433311 112356665555554
Q ss_pred HHHHHHHHHHhcCCCHHHHhhhhhcccc
Q 011335 276 LVWTCLDVIFFGKPSVIGAVQGMMTGLV 303 (488)
Q Consensus 276 l~~~~~~~~~~~k~~~~~~~nG~LAGlV 303 (488)
+....+.+..++|.......++.++|.+
T Consensus 118 ~~~~~~~~~l~~~~~~~~~~~~F~ag~l 145 (205)
T PF01891_consen 118 LVSYLLFRLLRRKFPRNIFVAGFLAGFL 145 (205)
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 4444444444444222333455554443
No 19
>PF14074 DUF4257: Protein of unknown function (DUF4257)
Probab=35.10 E-value=20 Score=29.90 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHhcC---C----------CHHHHhhhhhcccceeccCCCCcchHHHHHHHHhhhh
Q 011335 269 VAAATSLLVWTCLDVIFFGK---P----------SVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGS 326 (488)
Q Consensus 269 la~a~g~l~~~~~~~~~~~k---~----------~~~~~~nG~LAGlVaIta~a~~v~pw~A~iiG~iag~ 326 (488)
+|...|+++.++-++..+|| | -..++.-|++|+..++|...+.-+-+.-+.+.++||.
T Consensus 4 iA~liGgi~G~i~H~~~~g~i~~Pr~~k~~~~lGF~~d~~vG~~AaiL~v~~~~~~~~~~~iv~vSilaG~ 74 (82)
T PF14074_consen 4 IAGLIGGIMGLIGHYRKNGVIKKPRRTKQFFYLGFLEDMFVGSLAAILAVTVSSDPESLRVIVKVSILAGI 74 (82)
T ss_pred EeeeHhhHHHHHHHHhcCCEEecCccccceEEecHHHHHHHHHHHHHHhheeccCchhhhhhhhhhhhhhc
Confidence 45667888888887544443 2 2457788999999999888888888888888888775
No 20
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=34.08 E-value=6.3e+02 Score=27.23 Aligned_cols=57 Identities=14% Similarity=-0.035 Sum_probs=41.0
Q ss_pred hcccchhHHHHHHHHHHHhhhhcccceeeccchhhcccceeccCCeeehhhhHHHHHHHHHHHc
Q 011335 153 LGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVG 216 (488)
Q Consensus 153 aeR~~~~~~~i~~~l~~~~vY~v~ahwvW~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG 216 (488)
+.-.++.+-++..++ +++++..... +++++++.|.-+...||..+|..|..++-+..
T Consensus 288 ~~~v~p~~A~iiG~i-ag~v~~~~~~------~~~~~~iDD~~~~~~vHg~~Gi~G~i~~glf~ 344 (404)
T TIGR03644 288 PLTPSPLAATLIGAV-GGVIVVFSIV------LLDKLKIDDPVGAISVHGVAGIWGTLVVPITN 344 (404)
T ss_pred cCCCCHHHHHHHHHH-HHHHHHHHHH------HHHhCCCCCCcCchHhhhHHHHHHHHHHHHhc
Confidence 356677777777755 4444433222 56788999999999999999999988876653
No 21
>COG4120 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=33.30 E-value=33 Score=34.73 Aligned_cols=46 Identities=17% Similarity=0.158 Sum_probs=36.3
Q ss_pred hhcccceeccCCCCcchHHHHHHHHhhhhHHHHHHHHHHhhhcccccccc
Q 011335 298 MMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDD 347 (488)
Q Consensus 298 ~LAGlVaIta~a~~v~pw~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD 347 (488)
.+.|.|+.+.-..=++||.|.+++++||.+.=...-+++.| .||+|
T Consensus 42 pLGaAv~a~li~~G~nP~~at~~a~~AG~~aG~it~~l~~k----~kI~~ 87 (293)
T COG4120 42 PLGAAVAATLIAAGVNPFLATLVAMVAGAAAGMITGLLNVK----FKILT 87 (293)
T ss_pred cchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHh----ccHHH
Confidence 36677777777788999999999999999876666666664 68887
No 22
>PLN02953 phosphatidate cytidylyltransferase
Probab=33.28 E-value=47 Score=35.53 Aligned_cols=44 Identities=14% Similarity=0.063 Sum_probs=35.8
Q ss_pred cchHHHHHHHHhhhhHHHHHHHHHHhhhccccccccccccccccc
Q 011335 312 VQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHA 356 (488)
Q Consensus 312 v~pw~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg 356 (488)
..++.++++|++.++...++- ..+..+|++.+|.|--..+|=||
T Consensus 331 ~~~~~~i~lg~li~~~~~~GD-L~eS~iKR~~gVKDsG~liPGHG 374 (403)
T PLN02953 331 QSLFSSIAFGFLNFFGSVFGD-LTESMIKRDAGVKDSGSLIPGHG 374 (403)
T ss_pred hHHHHHHHHHHHHHHHHHhhH-HHHHHHhHccCCCCccccCCCCC
Confidence 456778899999998888884 45677788899999888888887
No 23
>PRK06433 NADH dehydrogenase subunit J; Provisional
Probab=30.49 E-value=66 Score=27.10 Aligned_cols=41 Identities=17% Similarity=0.215 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHhhcC
Q 011335 394 VQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQLAIG 437 (488)
Q Consensus 394 ~ql~~Ql~g~~v~~~ws~~~~~i~~~~l~~~~~lRvs~e~E~~G 437 (488)
..+..+.+++.-+++++..++.+..+.++.+ |.++++|..|
T Consensus 47 ~lL~a~fvA~~qi~VYaGai~vLflF~iml~---~~~~~~~~~~ 87 (88)
T PRK06433 47 VMLNAEFLAAVQVLVYVGAVLILITFAVMLT---KGEEGEESRG 87 (88)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHc---CcccccCCCC
Confidence 4566789999999999999999888888764 3344444443
No 24
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=30.33 E-value=2.9e+02 Score=24.91 Aligned_cols=85 Identities=18% Similarity=0.148 Sum_probs=57.1
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhccccccccccccccccchhhhHhhhhhhhccCccccccCCCCCCCccccCCcch
Q 011335 314 SWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVTGLLGGLLTGLFAEPQLCKLTLPEPTRGAFYGGKGG 393 (488)
Q Consensus 314 pw~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~Gl~~g~~~~ 393 (488)
|+.|-.+-...|.+.......+.+. .+...--++=..+-.+|+.|.+.+..
T Consensus 30 ~~~as~i~~~~G~i~~~i~~~~~~~----~~~~~~~~~p~w~~lGG~lG~~~V~~------------------------- 80 (138)
T PF04657_consen 30 PLVASFISFGVGFILLLIILLITGR----PSLASLSSVPWWAYLGGLLGVFFVLS------------------------- 80 (138)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcc----cccchhccCChHHhccHHHHHHHHHH-------------------------
Confidence 7777777777777665555444432 13333345556677788888777653
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 011335 394 VQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPL 427 (488)
Q Consensus 394 ~ql~~Ql~g~~v~~~ws~~~~~i~~~~l~~~~~l 427 (488)
.....+-+|...+.......=.+.-.++|++..+
T Consensus 81 ~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~f 114 (138)
T PF04657_consen 81 NIILVPRLGAALTTILIVAGQLIASLLIDHFGLF 114 (138)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 2245577888888888888888888999987443
No 25
>TIGR01427 PTS_IIC_fructo PTS system, fructose subfamily, IIC component. This model represents the IIC component, or IIC region of a IIABC or IIBC polypeptide of a phosphotransferase system for carbohydrate transport. Members of this family belong to the fructose-specific subfamily of the broader family (pfam02378) of PTS IIC proteins. Members should be found as part of the same chain or in the same operon as fructose family IIA (TIGR00848) and IIB (TIGR00829) protein regions. A number of bacterial species have members in two different branches of this subfamily, suggesting some diversity in substrate specificity of its members.
Probab=29.14 E-value=2.9e+02 Score=29.08 Aligned_cols=51 Identities=22% Similarity=0.418 Sum_probs=32.9
Q ss_pred HHHHHhcCCCHHHHhhhhhcccceeccCCCCcchHHHHHHHHhhhhHHHHHHHHHHh
Q 011335 281 LDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHK 337 (488)
Q Consensus 281 ~~~~~~~k~~~~~~~nG~LAGlVaIta~a~~v~pw~A~iiG~iag~i~~~~~~~l~~ 337 (488)
+.|-..+|+-. .-|.+.|+++....+++ .++++.|++++.+.....|+++|
T Consensus 82 Ia~Sia~k~g~---~pG~i~G~~~~~~~~Gf---lGgII~gilag~~~~~lek~ikK 132 (346)
T TIGR01427 82 IAYSIADRPGL---APGMIAGLIANNFNSGF---LGGIIAGFLAGYVVKGLQKYIKK 132 (346)
T ss_pred HHHHHccCcCC---cHHHHHHHHHHccccch---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444677733 34999999988766664 37777777777665544454444
No 26
>PRK10457 hypothetical protein; Provisional
Probab=28.43 E-value=1.4e+02 Score=24.88 Aligned_cols=72 Identities=18% Similarity=0.296 Sum_probs=39.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhccccccccccccccccchhhhHhhhhhhhccCccccccCCCCCCCccccCCcchH
Q 011335 315 WAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVTGLLGGLLTGLFAEPQLCKLTLPEPTRGAFYGGKGGV 394 (488)
Q Consensus 315 w~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~Gl~~g~~~~~ 394 (488)
...+++|+++|.+.-. +. +=+|+.+.+ ..-+-|+.|++..++.+..-..+ +..| . +..
T Consensus 4 i~~iiiG~iaG~lA~~----i~-------pg~~~~G~~-~tiilGiiGA~iGg~l~~~~g~~-----~~~g----~-~~~ 61 (82)
T PRK10457 4 LSWIIFGLIAGILAKW----IM-------PGKDGGGFF-MTIILGIVGAVVGGWISTFFGFG-----KVDG----F-NFG 61 (82)
T ss_pred HHHHHHHHHHHHHHHH----hc-------CCCCCcCHH-HHHHHHHHHHHHHHHHHHHhCcc-----cccc----c-cHH
Confidence 3567888888876422 22 224555543 44666777777777654221000 0112 1 345
Q ss_pred HHHHHHHHHHHHHH
Q 011335 395 QFLKQIVGALFVIA 408 (488)
Q Consensus 395 ql~~Ql~g~~v~~~ 408 (488)
.+..+++|.++.+.
T Consensus 62 ~~i~aviGAiill~ 75 (82)
T PRK10457 62 SFVVAVIGAIVVLF 75 (82)
T ss_pred HHHHHHHHHHHHHH
Confidence 68888888777654
No 27
>PRK04032 hypothetical protein; Provisional
Probab=27.77 E-value=26 Score=32.89 Aligned_cols=33 Identities=12% Similarity=-0.016 Sum_probs=26.8
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcccccccc
Q 011335 314 SWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDD 347 (488)
Q Consensus 314 pw~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD 347 (488)
.+.++++|++.++.+.++- ..+..+|++.++.|
T Consensus 67 ~~~~~~~g~li~v~~~~GD-L~eS~iKR~~gVKD 99 (159)
T PRK04032 67 LGVAIILAFLLSFGALLGD-MLGSFIKRRLGLER 99 (159)
T ss_pred HHHHHHHHHHHHHHHHHhh-HHHHHHhhccCCCC
Confidence 3568999999998888875 45777788899999
No 28
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=27.00 E-value=1.4e+02 Score=28.08 Aligned_cols=72 Identities=18% Similarity=0.190 Sum_probs=39.5
Q ss_pred CCCCcHHHHHHHHHHHHHhhhhhcCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHhhhhhcccc
Q 011335 226 FPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPS--VIGAVQGMMTGLV 303 (488)
Q Consensus 226 ~~~~s~~~~~lGt~lLw~gW~gFN~gs~~~~~~~~~~a~~NT~la~a~g~l~~~~~~~~~~~k~~--~~~~~nG~LAGlV 303 (488)
.++++.....++..+.-.+.--+.+|+ .....+|...|.+..++...+.+.+.+ ......+.+++++
T Consensus 98 ~~~y~~~~~~l~~~l~~~~fa~lfgg~-----------~~~~~~a~i~g~~~~~~~~~~~r~~~~~~~~~~~aa~~~~~~ 166 (193)
T PF06738_consen 98 PPRYPPWLVILAAGLASAAFALLFGGS-----------WIDMIVAFILGLLVGLLRQLLSRRRLNSFIQEFIAAFLASLL 166 (193)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 346788888888777766555544443 223345555555555555544444433 3345556666655
Q ss_pred eeccC
Q 011335 304 CITPG 308 (488)
Q Consensus 304 aIta~ 308 (488)
+....
T Consensus 167 a~~~~ 171 (193)
T PF06738_consen 167 AALLA 171 (193)
T ss_pred HHHHH
Confidence 54433
No 29
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=26.89 E-value=1.9e+02 Score=26.57 Aligned_cols=45 Identities=18% Similarity=0.201 Sum_probs=28.6
Q ss_pred HHHhhhhcccceeeccchhhcccceeccCCeeehhhhHHHHHHHHHH--HccCCC
Q 011335 168 WLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYW--VGPRLK 220 (488)
Q Consensus 168 ~~~~vY~v~ahwvW~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~--lG~R~~ 220 (488)
...++|-...+|.-++ .|-+|....-++++.+.+++.++ ..+|++
T Consensus 17 ~~~~vY~~~t~~~~~~--------~E~~Gt~aL~ls~~l~~mig~yl~~~~rr~~ 63 (137)
T PF12270_consen 17 VVAVVYGFWTKWSGDG--------GEWVGTVALVLSGGLALMIGFYLRFTARRIG 63 (137)
T ss_pred HHHHHHHHHHhccCCC--------CCcchHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 3455665554443322 28889888888888888877753 345544
No 30
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=23.98 E-value=7.3e+02 Score=25.64 Aligned_cols=120 Identities=18% Similarity=0.207 Sum_probs=66.6
Q ss_pred eehhhhHHHHHHHHHH---HccCCCCCCCCCCC----------CcHHHHHHHHHHHHHhhhhhcCCcccccchhhHHHHH
Q 011335 199 VIHVSSGIAGLTAAYW---VGPRLKSDKERFPP----------NNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAIL 265 (488)
Q Consensus 199 vVH~~gG~~gL~~a~~---lG~R~~~~~~~~~~----------~s~~~~~lGt~lLw~gW~gFN~gs~~~~~~~~~~a~~ 265 (488)
..|+++-..+|..+++ +.+|....+..+-. +...+..++.+++|=.+.=|........ ...++
T Consensus 54 a~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~nav~Li~~s~~I~~EAi~R~~~P~~i~~----~~ml~ 129 (296)
T COG1230 54 ALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFLNALLLIVVSLLILWEAIQRLLAPPPIHY----SGMLV 129 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc----cchHH
Confidence 5799999999988865 34443332222221 4456677777888888888776543321 22333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-----------CHHHHhhhhhcccceeccCCCCcchHHHHHHHH
Q 011335 266 NTNVAAATSLLVWTCLDVIFFGKP-----------SVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGI 322 (488)
Q Consensus 266 NT~la~a~g~l~~~~~~~~~~~k~-----------~~~~~~nG~LAGlVaIta~a~~v~pw~A~iiG~ 322 (488)
-..++...-.++++++..-..+.. |...-.-.++||++-.-..-....|..+++|++
T Consensus 130 va~~GL~vN~~~a~ll~~~~~~~lN~r~a~LHvl~D~Lgsv~vIia~i~i~~~~w~~~Dpi~si~i~~ 197 (296)
T COG1230 130 VAIIGLVVNLVSALLLHKGHEENLNMRGAYLHVLGDALGSVGVIIAAIVIRFTGWSWLDPILSIVIAL 197 (296)
T ss_pred HHHHHHHHHHHHHHHhhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHH
Confidence 334444444444444432100012 333344455666666656656677777777765
No 31
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.43 E-value=1.9e+02 Score=25.27 Aligned_cols=43 Identities=16% Similarity=0.081 Sum_probs=28.6
Q ss_pred HHHHHhhhhhcCCccccc-chhhHHHHHHHHHHHHHHHHHHHHH
Q 011335 239 GLLWMGWSGFNGGAPYAA-HIASSIAILNTNVAAATSLLVWTCL 281 (488)
Q Consensus 239 ~lLw~gW~gFN~gs~~~~-~~~~~~a~~NT~la~a~g~l~~~~~ 281 (488)
.++...|...|....... =+....+++|+.+|..+.-.+.+++
T Consensus 11 ~~~~~~Wi~~N~~~~~~~~fDpyPFilLnl~lS~~Aa~~ap~Il 54 (108)
T PF06210_consen 11 TVFLAVWILLNILAPPRPAFDPYPFILLNLVLSLEAAYQAPLIL 54 (108)
T ss_pred HHHHHHHHHHHhhccccCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 344456777777543321 1334689999999999888887765
No 32
>PRK11909 cobalt transport protein CbiM; Provisional
Probab=21.21 E-value=4.9e+02 Score=25.73 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=18.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhh
Q 011335 315 WAAIVMGILSGSIPWVTMMILHKK 338 (488)
Q Consensus 315 w~A~iiG~iag~i~~~~~~~l~~~ 338 (488)
+...++|++=|++..+...+++|.
T Consensus 189 ~h~~i~~i~Eg~iT~~~~~~l~~~ 212 (230)
T PRK11909 189 AHLTVAGIVEAIVTGLVVYYLQKA 212 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445889899888888888764
No 33
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=21.20 E-value=1.9e+02 Score=31.38 Aligned_cols=48 Identities=19% Similarity=0.179 Sum_probs=26.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHh--hhccccccccccccccccchhhhHh
Q 011335 315 WAAIVMGILSGSIPWVTMMILHK--KCSLLQQVDDTLAVFHTHAVTGLLG 362 (488)
Q Consensus 315 w~A~iiG~iag~i~~~~~~~l~~--~l~~~l~IDD~~~v~~vHg~~Gi~G 362 (488)
+.-+++|+++|....+..+.+.+ ++.+|.++..+....-.-.+.|+.+
T Consensus 236 ~~~~~lGii~G~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~g~~~ 285 (443)
T COG0038 236 LLYLVLGIIAGLFGVLLSRLLALSRRFFRRLPLPPLLRPALGGLLVGALG 285 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence 35689999999988666655532 2334445554444443333333333
No 34
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=21.15 E-value=1.7e+02 Score=29.35 Aligned_cols=63 Identities=25% Similarity=0.254 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHH--------hcCCCHHHHhh---hhhcccceeccCCCCcchHHHHHHHHhhhhHHHHH
Q 011335 268 NVAAATSLLVWTCLDVIF--------FGKPSVIGAVQ---GMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVT 331 (488)
Q Consensus 268 ~la~a~g~l~~~~~~~~~--------~~k~~~~~~~n---G~LAGlVaIta~a~~v~pw~A~iiG~iag~i~~~~ 331 (488)
+.+...+++.++.+++-. .-.+|+.+..| +++||+|--.++-++.+. -++++|+++|+++-..
T Consensus 224 l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si-~sillGflsg~iYava 297 (309)
T COG5070 224 LMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSI-FSILLGFLSGAIYAVA 297 (309)
T ss_pred HHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHH-HHHHHHHHHHHHHHHH
Confidence 445555566656555422 11346777765 789999999888877654 5789999999997654
No 35
>TIGR01594 holin_lambda phage holin, lambda family. This model represents one of a large number of mutally dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=20.66 E-value=1.9e+02 Score=25.33 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=27.6
Q ss_pred HHHhhhhhcccceeccCC--C--CcchHHHHHHHHhhhhHHHHHHHH----HHhhhcccccccc
Q 011335 292 IGAVQGMMTGLVCITPGA--G--LVQSWAAIVMGILSGSIPWVTMMI----LHKKCSLLQQVDD 347 (488)
Q Consensus 292 ~~~~nG~LAGlVaIta~a--~--~v~pw~A~iiG~iag~i~~~~~~~----l~~~l~~~l~IDD 347 (488)
..+.++.++|+++.+... . -+++.-+..+|..=|. ++... +.+.+++|.+.||
T Consensus 47 ~~llea~mCg~la~~~~~~l~~~g~~~~~a~~~g~~IGf---lGvd~ir~~~~~~i~kK~g~~~ 107 (107)
T TIGR01594 47 RKLIDALMCAAIALVAASALDFLGLPTSLSPFLGGMIGF---VGVDKIREFAKRFINKKAGVDD 107 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhheee---ccHHHHHHHHHHHHHhhcCCCC
Confidence 456788888877654443 2 3344555555544444 33333 3334444566665
No 36
>PRK11375 allantoin permease; Provisional
Probab=20.59 E-value=2.2e+02 Score=31.17 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCChHHhhcC
Q 011335 409 WNLVSTTIILLAIRIFIPLRMPEEQLAIG 437 (488)
Q Consensus 409 ws~~~~~i~~~~l~~~~~lRvs~e~E~~G 437 (488)
.+++++.++..+++|..+-|-++|+|..|
T Consensus 456 ~g~iva~~~Y~~l~~~~~~~~~~~~~~~~ 484 (484)
T PRK11375 456 VGVIVAFVAYALLKKRTTAEKTGEQKTIG 484 (484)
T ss_pred HHHHHHHHHHHHHHhhCCCccccccccCC
Confidence 35566666777777766666677776654
No 37
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=20.44 E-value=45 Score=28.01 Aligned_cols=43 Identities=12% Similarity=-0.018 Sum_probs=25.0
Q ss_pred CCCCccccCCCCCccccccccchHHHHHHHHHHHHHhhHHHhhh
Q 011335 4 PPIPIAYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLII 47 (488)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~d~~w~L~~~~lV~~~m~~Gfall 47 (488)
+++|+.++|+++-+..+-.-.-..-+.+|+.+| |.|..=|.++
T Consensus 13 ~~si~d~DQL~qlVsrN~sfirdFvLVic~~lV-fVii~lFi~l 55 (84)
T PF06143_consen 13 TNSILDYDQLEQLVSRNRSFIRDFVLVICCFLV-FVIIVLFILL 55 (84)
T ss_pred cCCCCcHHHHHHHHHhChHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 477777888555554433222233346777777 7776555554
No 38
>COG1079 Uncharacterized ABC-type transport system, permease component [General function prediction only]
Probab=20.13 E-value=3.2e+02 Score=28.34 Aligned_cols=45 Identities=11% Similarity=0.216 Sum_probs=34.2
Q ss_pred CcchHHHHHHHHhhhhHHHHHHHHHHhhhccccccccccccccccchhh
Q 011335 311 LVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVTG 359 (488)
Q Consensus 311 ~v~pw~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg~~G 359 (488)
--+||.+++.|+++|.++-+..-++..+ +|-|.-+-=.++|.++-
T Consensus 59 t~spw~gl~~a~l~g~l~~ll~a~~ti~----l~~nqiisG~alnl~a~ 103 (304)
T COG1079 59 TGSPWLGLLAAALVGALFGLLHAFLTIK----LRANQIISGLALNLLAS 103 (304)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHh----hccccchhHHHHHHHHH
Confidence 5589999999999998876666555554 68898888777776553
Done!