Query 011335
Match_columns 488
No_of_seqs 142 out of 1352
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 06:00:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011335.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011335hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b2h_A AMT-1, ammonium transpo 100.0 8E-107 3E-111 842.7 35.8 392 22-451 2-394 (399)
2 1u7g_A Probable ammonium trans 100.0 3.4E-99 1E-103 782.9 33.5 380 21-429 5-385 (385)
3 3b9w_A Ammonium transporter fa 100.0 4.1E-81 1.4E-85 650.0 26.1 343 38-450 25-378 (407)
4 3hd6_A Ammonium transporter RH 100.0 4.7E-79 1.6E-83 645.2 21.9 408 25-451 11-452 (490)
5 3b9w_A Ammonium transporter fa 35.1 2.5E+02 0.0087 28.8 11.3 143 21-216 172-315 (407)
6 2b2h_A AMT-1, ammonium transpo 32.7 4.2E+02 0.014 27.0 13.9 137 21-216 182-320 (399)
7 3hd6_A Ammonium transporter RH 17.2 1.8E+02 0.0062 30.7 6.2 76 293-372 132-207 (490)
8 4aps_A DI-OR tripeptide H+ sym 11.6 1E+03 0.034 23.1 15.6 26 264-289 326-351 (491)
9 2l2t_A Receptor tyrosine-prote 11.0 3E+02 0.01 19.2 3.9 17 312-328 6-22 (44)
10 2jln_A MHP1; hydantoin, transp 10.6 6.5E+02 0.022 25.9 8.3 19 409-427 432-450 (501)
No 1
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=100.00 E-value=7.9e-107 Score=842.71 Aligned_cols=392 Identities=32% Similarity=0.608 Sum_probs=361.8
Q ss_pred cccchHHHHHHHHHHHHHhhHHHhhhcccccccccHHHHHHHHHHHHHHHHHHHHhhchhhcccCCCCCcccCCccchhh
Q 011335 22 NKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQ 101 (488)
Q Consensus 22 ~~~d~~w~L~~~~lV~~~m~~GfalleaG~Vr~kn~~~~l~~~~~~~~i~~i~~~~~Gy~laFG~~~~~fiG~~~~~~~~ 101 (488)
|+.|+.|+|+|++|| ++|||||+++|+|+||+||++|+++||++++++++++||++||+++||++.++|+|+.+.+
T Consensus 2 ~~~d~~w~l~~~~LV-~~M~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~~~~~~iG~~~~~--- 77 (399)
T 2b2h_A 2 SDGNVAWILASTALV-MLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYSVSFGNDISGIIGGLNYA--- 77 (399)
T ss_dssp CHHHHHHHHHHHHHH-HHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSEETTTEECSTTG---
T ss_pred CcccHHHHHHHHHHH-HHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCchHh---
Confidence 568999999999999 9999999999999999999999999999999999999999999999998667899974321
Q ss_pred hhhcccCCCCCCccccCCccccCCcchhHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhhcccceee
Q 011335 102 KYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLW 181 (488)
Q Consensus 102 ~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~fq~~Faa~a~~I~sGavaeR~~~~~~~i~~~l~~~~vY~v~ahwvW 181 (488)
++... + .- ...+++||++||++|++|++||++||+|+.+|++|+++|++++|||++||+|
T Consensus 78 --~~~~~----------------~-~~-~~~~~~Fq~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ahwvW 137 (399)
T 2b2h_A 78 --LLSGV----------------K-GE-DLLFMMYQMMFAAVTIAILTSAIAERAKVSSFILLSALWLTFVYAPFAHWLW 137 (399)
T ss_dssp --GGTTC----------------C-TH-HHHHHHHHHHHHHHHHHHHGGGGTTTBCHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred --hccCC----------------C-CC-chhHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhhhhhheE
Confidence 11100 0 01 2678999999999999999999999999999999999999999999999999
Q ss_pred ccchhhcccceeccCCeeehhhhHHHHHHHHHHHccCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhcCCcccccchhhH
Q 011335 182 GGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASS 261 (488)
Q Consensus 182 ~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~~~~~~~~~~~s~~~~~lGt~lLw~gW~gFN~gs~~~~~~~~~ 261 (488)
++|||.++|++|||||+|||++||++||++++++|||+++++++++|||++++++|+++||+||||||+||++..+..+.
T Consensus 138 ~~GwL~~lG~~DFAGs~vVH~~gG~~aL~~a~~LG~R~g~~~~~~~~hn~~~~~lG~~lLW~GWfGFN~GS~l~~~~~a~ 217 (399)
T 2b2h_A 138 GGGWLAKLGALDFAGGMVVHISSGFAALAVAMTIGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAANDVAI 217 (399)
T ss_dssp SSCHHHHTTCCCSSCTTTTHHHHHHHHHHHHHHHCCCTTTTTSCCCCSCHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHH
T ss_pred CchhHHhcCCccccCCeEEEechhHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcHHhhccccchhh
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999998888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhhhhcccceeccCCCCcchHHHHHHHHhhhhHHHHHHHHHHhhhcc
Q 011335 262 IAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSL 341 (488)
Q Consensus 262 ~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LAGlVaIta~a~~v~pw~A~iiG~iag~i~~~~~~~l~~~l~~ 341 (488)
++++||++|+++|+++|+++++++ ||+|+.+++||+|||||||||+|++++||+|++||+++|++|++++ .+++
T Consensus 218 ~a~~nT~lAaaag~l~~~~~~~~~-gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~-~l~~---- 291 (399)
T 2b2h_A 218 NAVVVTNTSAAVAGFVWMVIGWIK-GKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAM-DFRI---- 291 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHH-HHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHH-HHHH----
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999988 3333
Q ss_pred ccccccccccccccchhhhHhhhhhhhccCccccccCCCCCCCccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011335 342 LQQVDDTLAVFHTHAVTGLLGGLLTGLFAEPQLCKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAI 421 (488)
Q Consensus 342 ~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~Gl~~g~~~~~ql~~Ql~g~~v~~~ws~~~~~i~~~~l 421 (488)
|+|||||||++++||+||+||++++|+|++++..+ .+|++|+ +..|++.|++|++++++|+++.++++++++
T Consensus 292 kl~iDD~l~a~~vHgv~Gi~G~l~~glfa~~~~~g------~~Gl~~g--~~~ql~~Ql~g~~~~~~~~~v~~~i~~~il 363 (399)
T 2b2h_A 292 KKKIDESLDAWAIHGIGGLWGSVAVGILANPEVNG------YAGLLFG--NPQLLVSQLIAVASTTAYAFLVTLILAKAV 363 (399)
T ss_dssp HTTCCCTTCHHHHHHHHHHHHHHHHHHHCCHHHHS------CCCGGGT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCceeccchhhHHHHHHHHHHccccccC------CCccccC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999876421 2478885 579999999999999999999999999999
Q ss_pred HHhcCCCCChHHhhcC-ChhhhCcccccccc
Q 011335 422 RIFIPLRMPEEQLAIG-DDAVHGEEAYALWG 451 (488)
Q Consensus 422 ~~~~~lRvs~e~E~~G-D~~~hg~~ay~~~~ 451 (488)
|++.+||++||||++| |.+||||++|++.+
T Consensus 364 ~~~~glRv~~e~E~~GlD~~~hg~~ay~~~~ 394 (399)
T 2b2h_A 364 DAAVGLRVSSQEEYVGLDLSQHEEVAYTLEH 394 (399)
T ss_dssp HHHTCSBCCHHHHHHCHHHHHHCCCSCC---
T ss_pred HhcccCCCCHHHHHhCCCHHHhCcccCCccc
Confidence 9999999999999999 99999999998743
No 2
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=100.00 E-value=3.4e-99 Score=782.93 Aligned_cols=380 Identities=32% Similarity=0.567 Sum_probs=347.2
Q ss_pred ccccchHHHHHHHHHHHHHhh-HHHhhhcccccccccHHHHHHHHHHHHHHHHHHHHhhchhhcccCCCCCcccCCccch
Q 011335 21 LNKGDSAWQMTASTLVGIQSM-PGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPAL 99 (488)
Q Consensus 21 ~~~~d~~w~L~~~~lV~~~m~-~GfalleaG~Vr~kn~~~~l~~~~~~~~i~~i~~~~~Gy~laFG~~~~~fiG~~~~~~ 99 (488)
+|+.|+.|+|+|++|| ++|| |||+++|+|+||+||++|+++||++++++++++||++||+++||++ ++|+|+.+.+
T Consensus 5 ~~~~d~~w~l~~~~LV-~~M~~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~~-~~~iG~~~~~- 81 (385)
T 1u7g_A 5 ADKADNAFMMICTALV-LFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLASGEG-NNFFGNINWL- 81 (385)
T ss_dssp CCHHHHHHHHHHHHHH-HHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSC-SSSCCCSTTG-
T ss_pred cccccHHHHHHHHHHH-HHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CccccCcchh-
Confidence 5678999999999999 9999 9999999999999999999999999999999999999999999987 7899975422
Q ss_pred hhhhhcccCCCCCCccccCCccccCCcchhHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhhcccce
Q 011335 100 GQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFS 179 (488)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~fq~~Faa~a~~I~sGavaeR~~~~~~~i~~~l~~~~vY~v~ahw 179 (488)
+++.. ..+ ..+..+|...+++||++||++|++|++||++||+|+.+|++|+++|++++|||++||
T Consensus 82 ----~l~~~--~~~---------~~~~~ip~~~~~~FQ~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ahw 146 (385)
T 1u7g_A 82 ----MLKNI--ELT---------AVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHM 146 (385)
T ss_dssp ----GGTTC--CTT---------CEETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHHHHHHH
T ss_pred ----hccCC--CCc---------ccccCcchHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHhhhhhhe
Confidence 11111 000 001247889999999999999999999999999999999999999999999999999
Q ss_pred eeccchhhcccceeccCCeeehhhhHHHHHHHHHHHccCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhcCCcccccchh
Q 011335 180 LWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIA 259 (488)
Q Consensus 180 vW~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~~~~~~~~~~~s~~~~~lGt~lLw~gW~gFN~gs~~~~~~~ 259 (488)
+|++|||.++|++|||||+|||++||++||++++++|||+++++++++|||++++++|+++||+||||||+||++..++.
T Consensus 147 vW~~GwL~~lG~~DFAGs~vVH~~gG~aaL~~a~~LG~R~g~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~GS~l~~~~~ 226 (385)
T 1u7g_A 147 VWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEI 226 (385)
T ss_dssp HHSSCHHHHHTCCCSSCTTTTHHHHHHHHHHHHHHSCCCCCTTCSSCCGGGHHHHHHHHHHHHHHHHHHHHGGGSSSSHH
T ss_pred eEcchhhhhcceeeccCCeEEEecchHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhhcchhhhhccch
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999988888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhhhhcccceeccCCCCcchHHHHHHHHhhhhHHHHHHHHHHhhh
Q 011335 260 SSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKC 339 (488)
Q Consensus 260 ~~~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LAGlVaIta~a~~v~pw~A~iiG~iag~i~~~~~~~l~~~l 339 (488)
+.++++||++|+++|+++|++++++++||+|+.+++||+|||||||||+|++++||+|++||+++|++|+++++++++|
T Consensus 227 a~~a~~nT~lAaaag~l~~~~~~~~~~gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~- 305 (385)
T 1u7g_A 227 AALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRL- 305 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhhccCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999877664
Q ss_pred ccccccccccccccccchhhhHhhhhhhhccCccccccCCCCCCCccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011335 340 SLLQQVDDTLAVFHTHAVTGLLGGLLTGLFAEPQLCKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILL 419 (488)
Q Consensus 340 ~~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~Gl~~g~~~~~ql~~Ql~g~~v~~~ws~~~~~i~~~ 419 (488)
+|||||||++++||+||+||++++|+|++++..+.. ...|++|+ .|++.|++|++++++|+++.++++++
T Consensus 306 ---l~iDD~l~a~~vHgv~Gi~G~l~~glfa~~~~~g~~---~~~G~~~g----~ql~~Ql~g~~~~~~~~~v~~~i~~~ 375 (385)
T 1u7g_A 306 ---LRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGVG---FAEGVTMG----HQLLVQLESIAITIVWSGVVAFIGYK 375 (385)
T ss_dssp ---HCSCCGGGHHHHHHHHHHHHHHHHHHHTSGGGTCCC---CCTTCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCCCCCCEeecccccHHHHHHHHHhccccccCcc---ccCCcchh----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999987642210 12244443 59999999999999999999999999
Q ss_pred HHHHhcCCCC
Q 011335 420 AIRIFIPLRM 429 (488)
Q Consensus 420 ~l~~~~~lRv 429 (488)
++|++.+|||
T Consensus 376 il~~~~glRv 385 (385)
T 1u7g_A 376 LADLTVGLRV 385 (385)
T ss_dssp HHHHHTCSBC
T ss_pred HHHHccCCcC
Confidence 9999999997
No 3
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=100.00 E-value=4.1e-81 Score=650.04 Aligned_cols=343 Identities=19% Similarity=0.262 Sum_probs=301.2
Q ss_pred HHhhHHHhhhcccccccccHHHHHHHHHHHHHHHHHHHHhhchhhcccCCCCCcccCCccchhhhhhcccCCCCCCcccc
Q 011335 38 IQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEV 117 (488)
Q Consensus 38 ~~m~~GfalleaG~Vr~kn~~~~l~~~~~~~~i~~i~~~~~Gy~laFG~~~~~fiG~~~~~~~~~~~~~~~~~~~~~~~~ 117 (488)
.++.+||++|++++ |||..+.+.+|++..+ ..++|++++|. ++|+.
T Consensus 25 vMi~iGfGFL~~~L--rk~~~s~v~~n~l~~a-~~~QW~~l~~~-------~Gf~~------------------------ 70 (407)
T 3b9w_A 25 AMLLVGFGFLMVFV--RRYGFSATTGTYLVVA-TGLPLYILLRA-------NGIFG------------------------ 70 (407)
T ss_dssp HHHHHHHHHHGGGS--TTCHHHHHHHHHHHHH-HHHHHHHHHHH-------TTTTS------------------------
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHHHHHHhc-------ccccC------------------------
Confidence 35567999999998 9999999999998854 67899999982 11111
Q ss_pred CCccccCCcchhHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhhcccceeeccchhhcccceeccCC
Q 011335 118 DGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGG 197 (488)
Q Consensus 118 ~g~~~~~~~~~p~~~~~~fq~~Faa~a~~I~sGavaeR~~~~~~~i~~~l~~~~vY~v~ahwvW~~GwL~~lG~~DfaG~ 197 (488)
+| .+|...+++||++||++|++|++||++||+|+.+|++|+ +|.+++|||.+||+|++||+...|++|||||
T Consensus 71 ~g-------~ip~~~~~~fq~~Faa~t~~IvsGAvaeR~kf~~~li~~-~~~~~vY~~~~~wvw~gG~~~~~G~~DfAGs 142 (407)
T 3b9w_A 71 HA-------LTPHSVDAVIYAEFAVATGLIAMGAVLGRLRVFQYALLA-LFIVPVYLLNEWLVLDNASGLTEGFQDSAGS 142 (407)
T ss_dssp SC-------CCSSSHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHH-HHHHHHHHHHHHHHTTCTTSSCTTCCCTTCT
T ss_pred CC-------cchHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHH-HHHHHhccceeEEEeCCcchhhcceeeccCc
Confidence 01 145567899999999999999999999999999999998 5678999999999999899877799999999
Q ss_pred eeehhhhHHHHHHHHHHHccCCCCC-CCCCCCCcHHHHHHHHHHHHHhhhhhcCCcccccchhhHHHHHHHHHHHHHHHH
Q 011335 198 YVIHVSSGIAGLTAAYWVGPRLKSD-KERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLL 276 (488)
Q Consensus 198 ~vVH~~gG~~gL~~a~~lG~R~~~~-~~~~~~~s~~~~~lGt~lLw~gW~gFN~gs~~~~~~~~~~a~~NT~la~a~g~l 276 (488)
+|||++||++||+++++||||++++ +++++|||++++++|+++||+||||||+| +..++.+.++++||++|+++|++
T Consensus 143 ~vVH~~gG~~aLa~a~~LG~R~~~~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~G--l~~~~~~~~a~~NT~lAaaag~l 220 (407)
T 3b9w_A 143 IAIHAFGAYFGLGVSIALTTAAQRAQPIESDATSDRFSMLGSMVLWLFWPSFATA--IVPFEQMPQTIVNTLLALCGATL 220 (407)
T ss_dssp TTTHHHHHHHHHHHHHHHCCHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHT--TSCGGGHHHHHHHHHHHHHHHHH
T ss_pred eEEEeCchHHHHHHHHHhcCccccCCCCcCCCCCHHHHHHHHHHHHHHHHhhhhh--hccchhhHHHHHHhHHHHHHHHH
Confidence 9999999999999999999997652 22389999999999999999999999999 35677889999999999999999
Q ss_pred HHHHHHHH-HhcCCCHHHHhhhhhcccceeccCCCCcchHHHHHHHHhhhhHHHHHHHHHHhhhcccccccccccccccc
Q 011335 277 VWTCLDVI-FFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTH 355 (488)
Q Consensus 277 ~~~~~~~~-~~~k~~~~~~~nG~LAGlVaIta~a~~v~pw~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vH 355 (488)
+|++++++ .+||+|+.+++||+|||||||||+|++++||+|++||++||++|+++++++++++++|+|||||||++++|
T Consensus 221 ~~~~~~~~~~~gK~~~~~~~nG~LAGLVAITa~~~~v~p~~A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~vH 300 (407)
T 3b9w_A 221 ATYFLSALFHKGKASIVDMANAALAGGVAIGSVCNIVGPVGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNLH 300 (407)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHTTHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHhhhhhhheeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeecc
Confidence 99999998 78999999999999999999999999999999999999999999999999988888889999999999999
Q ss_pred chhhhHhhhhhhhccCccccccCCCCCCCccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHhh
Q 011335 356 AVTGLLGGLLTGLFAEPQLCKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQLA 435 (488)
Q Consensus 356 g~~Gi~G~i~~glfa~~~~~~~~~~~~~~Gl~~g~~~~~ql~~Ql~g~~v~~~ws~~~~~i~~~~l~~~~~lRvs~e~E~ 435 (488)
|+||+||++++++|+.+. + ..|++|++++++|+++.++++++++|+ |+++|+|.
T Consensus 301 gv~Gi~G~l~~glfa~~~------------------~----~~Ql~g~~~~~~~s~v~~~i~~~il~~----r~~~e~e~ 354 (407)
T 3b9w_A 301 GLPGLLGGFSAILIVPGI------------------A----VAQLTGIGITLALALIGGVIAGALIKL----TGTTKQAY 354 (407)
T ss_dssp THHHHHHHHHHHHHSTTC------------------H----HHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCCSSTT
T ss_pred hHHHHHHHHHHHHHccCC------------------c----HHHHHHHHHHHHHHHHHHHHHHHHHhC----CCCHHHHc
Confidence 999999999999998641 1 159999999999999999999999998 99999999
Q ss_pred cC---------ChhhhCccccccc
Q 011335 436 IG---------DDAVHGEEAYALW 450 (488)
Q Consensus 436 ~G---------D~~~hg~~ay~~~ 450 (488)
+| |..||||++||++
T Consensus 355 ~g~~~we~p~ld~~~hg~~ayp~~ 378 (407)
T 3b9w_A 355 EDSHEFIHLAGPEDEHKAERLVLE 378 (407)
T ss_dssp CGGGTSSSCCCGGGC---------
T ss_pred CCcccccCccccHHHhchhhccch
Confidence 98 9999999999876
No 4
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.7e-79 Score=645.23 Aligned_cols=408 Identities=18% Similarity=0.248 Sum_probs=328.6
Q ss_pred chHHHHHHHHHHHHHhhHHHhhhcccccccccHHH-----------------HHHHHHHHHHHH-HHHHHhhchhhcccC
Q 011335 25 DSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVN-----------------SAFMVLYAFAAV-LICWVLVCYRMAFGD 86 (488)
Q Consensus 25 d~~w~L~~~~lV~~~m~~GfalleaG~Vr~kn~~~-----------------~l~~~~~~~~i~-~i~~~~~Gy~laFG~ 86 (488)
+.++.|...++ +.|..+..+++=+||+++..+ .....+..++++ +++++.+||.++|-+
T Consensus 11 ~~r~~lp~~~~---~~q~~~ivlf~~fv~y~~~~~~~~~~~~~~~~~~~~~~~~~~~Yp~fqDv~vMi~~GfGFLmtflk 87 (490)
T 3hd6_A 11 NLRWRLPLTCL---LLQVIMVILFGVFVRYDFEADAHWWSERTHKNLSDMENEFYYRYPSFQDVHVMVFVGFGFLMTFLQ 87 (490)
T ss_dssp CCTTHHHHHHH---HHHHHHHHHHHHHEECCCC------------------CHHHHHHHHHHHHHHHHHTHHHHHGGGST
T ss_pred chhHHHHHHHH---HHHHHHHHhhheeEEecCCCCccccccccccccccccchhhhcCccchhHHHHHHHHHHHHHHHHH
Confidence 44566665444 456678888888888865322 244568889988 899999999999999
Q ss_pred CCCCcccCCccchhhhhhcccCCCCCCccccCCccccCCcchhHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHH
Q 011335 87 QLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVP 166 (488)
Q Consensus 87 ~~~~fiG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~fq~~Faa~a~~I~sGavaeR~~~~~~~i~~~ 166 (488)
+|+ |-.....++-..+-++|+.+-|+-+ +. ..+..+|...+++||++||++|++|++||++||+|+.+|++|++
T Consensus 88 ryg-~ssv~~n~l~~a~~~Qwa~l~~g~~-~~----~~~g~ip~~~~~~fq~~Faa~t~~IvsGAvaeR~k~~~~li~~~ 161 (490)
T 3hd6_A 88 RYG-FSAVGFNFLLAAFGIQWALLMQGWF-HF----LQDRYIVVGVENLINADFCVASVCVAFGAVLGKVSPIQLLIMTF 161 (490)
T ss_dssp TCH-HHHHHHHHHHHHHHHHHHHHHHHHT-TC----BTTTBEECCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred Hhc-cHHHHHHHHHHHHHHHHHHHHHHHh-cc----ccCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 872 2111111221223334443322211 00 01234788899999999999999999999999999999999998
Q ss_pred HHHHhhhhcccceeeccchhhcccceeccCCeeehhhhHHHHHHHHHHHccCC---CCCCCCCCCCcHHHHHHHHHHHHH
Q 011335 167 LWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRL---KSDKERFPPNNVLLMLAGAGLLWM 243 (488)
Q Consensus 167 l~~~~vY~v~ahwvW~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~---~~~~~~~~~~s~~~~~lGt~lLw~ 243 (488)
++ +++||+ .||+ ||.++|++|||||++||++||++||++++++|||. ++++++.+|||++++++|+++||+
T Consensus 162 l~-~~vY~~-~~w~----~L~~lG~~DFAGs~vVH~~gG~aaLa~a~vLG~R~~~~~~~~~~~~~hn~~~a~LGt~lLW~ 235 (490)
T 3hd6_A 162 FQ-VTLFAV-NEFI----LLNLLKVKDAGGSMTIHTFGAYFGLTVTRILYRRNLEQSKERQNSVYQSDLFAMIGTLFLWM 235 (490)
T ss_dssp HH-HHHHHH-HHHH----HHTTSCCCCTTCTTTTHHHHHHHHHHHHHHTCCTTGGGGTTTSSCCHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHhh-hHHH----HHhccCceeecCceeeeHHHHHHHHHHHHhcCCcccccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 75 779998 4665 78899999999999999999999999999999983 445667889999999999999999
Q ss_pred hhhhhcCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCHHHHhhhhhcccceeccCCC-CcchHHHHHH
Q 011335 244 GWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVI--FFGKPSVIGAVQGMMTGLVCITPGAG-LVQSWAAIVM 320 (488)
Q Consensus 244 gW~gFN~gs~~~~~~~~~~a~~NT~la~a~g~l~~~~~~~~--~~~k~~~~~~~nG~LAGlVaIta~a~-~v~pw~A~ii 320 (488)
||||||+|++.. +..+.++++||++|+|+|+++|++++++ .+||+|+.+++||+|||||||||+|+ +++||+|++|
T Consensus 236 GWfGFN~gs~~~-~~~~~~a~~NT~lAaAag~lt~~~~s~l~~~~gK~s~~~~~nG~LAGLVAIT~~a~~~v~P~~AliI 314 (490)
T 3hd6_A 236 YWPSFNSAISYH-GDSQHRAAINTYCSLAACVLTSVAISSALHKKGKLDMVHIQNATLAGGVAVGTAAEMMLMPYGALII 314 (490)
T ss_dssp HHHHHTTTTCSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCHHHHHHGGGHHHHHTTTTTTTCSCHHHHHHH
T ss_pred HHHhhchhhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhhhceeeeEEEEccCcccccCHHHHHHH
Confidence 999999998753 5678899999999999999999999997 47899999999999999999999999 6999999999
Q ss_pred HHhhhhHHHHHHHHHHhhhccccccccccccccccchhhhHhhhhhhhccCccccccCCCCCCCcccc--------CC-c
Q 011335 321 GILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVTGLLGGLLTGLFAEPQLCKLTLPEPTRGAFY--------GG-K 391 (488)
Q Consensus 321 G~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~Gl~~--------g~-~ 391 (488)
|++||++|+++++++.+++++|+|||||||++++||+||+||++++|+|+.....+ .| +.+|+.| ++ .
T Consensus 315 G~iaG~i~~~~~~~l~~~l~~kl~iDD~lgv~~vHGv~Gi~G~l~~glfa~~~~~~-~~--g~~Gl~~~f~~~~~~gg~~ 391 (490)
T 3hd6_A 315 GFVCGIISTLGFVYLTPFLESRLHIQDTCGINNLHGIPGIIGGIVGAVTAASASLE-VY--GKEGLVHSFDFQGFNGDWT 391 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCTTCHHHHTHHHHHHHHHHHHHHHHC-------------------------CHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHCCCCccccchHHhhHHHHHHHHHHHHHhcccccc-cc--ccCcceeccccccccCCcc
Confidence 99999999999998887777789999999999999999999999999998653211 11 1245554 21 2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHhhcC-ChhhhCcccccccc
Q 011335 392 GGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQLAIG-DDAVHGEEAYALWG 451 (488)
Q Consensus 392 ~~~ql~~Ql~g~~v~~~ws~~~~~i~~~~l~~~~~lRvs~e~E~~G-D~~~hg~~ay~~~~ 451 (488)
+..|++.|++|++++++|+++.++++++++|+..++|+++|+|.+| |..|+.++.|+++.
T Consensus 392 ~~~ql~~Ql~gv~~~~~~a~v~~~ii~~iLk~~~~lRvs~e~e~~g~d~we~p~~~~~~~~ 452 (490)
T 3hd6_A 392 ARTQGKFQIYGLLVTLAMALMGGIIVGLILRLPFWGQPSDENCFEDAVYWEMPEGNSTVYI 452 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTSCCCCTTSTTCGGGTSCCCTTTC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHhCCCceeecCcccccccC
Confidence 4689999999999999999999999999999999999999999999 99999998887653
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=35.06 E-value=2.5e+02 Score=28.78 Aligned_cols=143 Identities=16% Similarity=0.049 Sum_probs=78.5
Q ss_pred ccccchHHHHHHHHHHHHHhhHHHhhhcccccccccHHHHHHHHHHHHHHHHHHHHhhchhhcccCCCCCcccCCccchh
Q 011335 21 LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALG 100 (488)
Q Consensus 21 ~~~~d~~w~L~~~~lV~~~m~~GfalleaG~Vr~kn~~~~l~~~~~~~~i~~i~~~~~Gy~laFG~~~~~fiG~~~~~~~ 100 (488)
+..-|..+.++.+.+. ++-- .-|.+|+........+++...++.+.+.+.|.++-+-+-.|+- +.
T Consensus 172 ~~~hn~~~~~lGt~lL-W~GW---fGFN~Gl~~~~~~~~a~~NT~lAaaag~l~~~~~~~~~~~gK~--------~~--- 236 (407)
T 3b9w_A 172 SDATSDRFSMLGSMVL-WLFW---PSFATAIVPFEQMPQTIVNTLLALCGATLATYFLSALFHKGKA--------SI--- 236 (407)
T ss_dssp CCHHHHHHHHHHHHHH-HHHH---HHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC--------CH---
T ss_pred CCCCCHHHHHHHHHHH-HHHH---HhhhhhhccchhhHHHHHHhHHHHHHHHHHHHHHHHHHhCCCC--------CH---
Confidence 3334556666666555 5544 4456674333333456667788888888888877664422221 00
Q ss_pred hhhhcccCCCCCCccccCCccccCCcchhHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhhccccee
Q 011335 101 QKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSL 180 (488)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~fq~~Faa~a~~I~sGavaeR~~~~~~~i~~~l~~~~vY~v~ahwv 180 (488)
. .+.+ .+.+-.....+-++-+++..-++..++ +++++.....++
T Consensus 237 -------------------------------~-~~~n---G~LAGLVAITa~~~~v~p~~A~iIG~i-aG~i~~~~~~~l 280 (407)
T 3b9w_A 237 -------------------------------V-DMAN---AALAGGVAIGSVCNIVGPVGAFVIGLL-GGAISVVGFVFI 280 (407)
T ss_dssp -------------------------------H-HHHH---HTTHHHHHHTTTTTTSCHHHHHHHHHH-HHHHHHHHHHTH
T ss_pred -------------------------------H-HHHH---hhhhhhheeccCCCCCCHHHHHHHHHH-HHHHHHHHHHHH
Confidence 0 0001 111222222233355667766666654 333332211110
Q ss_pred eccchh-hcccceeccCCeeehhhhHHHHHHHHHHHc
Q 011335 181 WGGGFL-YQWGVIDYSGGYVIHVSSGIAGLTAAYWVG 216 (488)
Q Consensus 181 W~~GwL-~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG 216 (488)
.-+| +++++.|--|...||..+|+.|..++-+..
T Consensus 281 --~~~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~glfa 315 (407)
T 3b9w_A 281 --QPMLESKAKTIDTCGVHNLHGLPGLLGGFSAILIV 315 (407)
T ss_dssp --HHHHHHHSCCCCTTCHHHHTTHHHHHHHHHHHHHS
T ss_pred --HHHHHhcCCCCCCCCCeecchHHHHHHHHHHHHHc
Confidence 0122 358999999999999999999988876654
No 6
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=32.66 E-value=4.2e+02 Score=27.04 Aligned_cols=137 Identities=11% Similarity=0.117 Sum_probs=82.3
Q ss_pred ccccchHHHHHHHHHHHHHhhHHHhhhcccccccccH--HHHHHHHHHHHHHHHHHHHhhchhhcccCCCCCcccCCccc
Q 011335 21 LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWA--VNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPA 98 (488)
Q Consensus 21 ~~~~d~~w~L~~~~lV~~~m~~GfalleaG~Vr~kn~--~~~l~~~~~~~~i~~i~~~~~Gy~laFG~~~~~fiG~~~~~ 98 (488)
+..-|..+.++.+.+. ++--+| |.+|+.-..|. ..+++...++.+.+.+.|.++-+-. ++- +
T Consensus 182 ~~~hn~~~~~lG~~lL-W~GWfG---FN~GS~l~~~~~a~~a~~nT~lAaaag~l~~~~~~~~~--gk~--------~-- 245 (399)
T 2b2h_A 182 IEPHSIPLTLIGAALL-WFGWFG---FNGGSALAANDVAINAVVVTNTSAAVAGFVWMVIGWIK--GKP--------G-- 245 (399)
T ss_dssp CCCSCHHHHHHHHHHH-HHHHHH---HHHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SCC--------C--
T ss_pred CCCCCHHHHHHHHHHH-HHHHHh---hcHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHH--cCC--------C--
Confidence 3445667777777665 655444 56666554443 3556667888888888888876644 321 0
Q ss_pred hhhhhhcccCCCCCCccccCCccccCCcchhHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhhcccc
Q 011335 99 LGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAF 178 (488)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~fq~~Faa~a~~I~sGavaeR~~~~~~~i~~~l~~~~vY~v~ah 178 (488)
. . -..+ .+.+-.....+-++-+++..-++..++ +++++....
T Consensus 246 -----------------------------~---~-~~~n---G~lAGLVaITa~~~~v~p~~A~iiG~i-ag~i~~~~~- 287 (399)
T 2b2h_A 246 -----------------------------S---L-GIVS---GAIAGLAAITPAAGFVDVKGAIVIGLV-AGIVCYLAM- 287 (399)
T ss_dssp -----------------------------H---H-HHHH---HHHHHHHHHTTTTTTCCHHHHHHHHHH-HHHHHHHHH-
T ss_pred -----------------------------H---H-HHHH---HHHHhhhhhccccccCCHHHHHHHHHH-HHHHHHHHH-
Confidence 0 0 0011 222222222333456777777777755 343333221
Q ss_pred eeeccchhhcccceeccCCeeehhhhHHHHHHHHHHHc
Q 011335 179 SLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVG 216 (488)
Q Consensus 179 wvW~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG 216 (488)
-+.+++++.|.-+...||..+|+.|..++-+..
T Consensus 288 -----~l~~kl~iDD~l~a~~vHgv~Gi~G~l~~glfa 320 (399)
T 2b2h_A 288 -----DFRIKKKIDESLDAWAIHGIGGLWGSVAVGILA 320 (399)
T ss_dssp -----HHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred -----HHHHHcCCCCCCCceeccchhhHHHHHHHHHHc
Confidence 134678999999999999999999988776654
No 7
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=17.21 E-value=1.8e+02 Score=30.67 Aligned_cols=76 Identities=16% Similarity=0.117 Sum_probs=50.9
Q ss_pred HHhhhhhcccceeccCCCCcchHHHHHHHHhhhhHHHHHHHHHHhhhccccccccccccccccchhhhHhhhhhhhccCc
Q 011335 293 GAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVTGLLGGLLTGLFAEP 372 (488)
Q Consensus 293 ~~~nG~LAGlVaIta~a~~v~pw~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~ 372 (488)
++.=++.+-.+..++-++-+++.+-++..++..+++... .++ ...+++..|--+.-.||-.+|.-|...+-++..+
T Consensus 132 q~~Faa~t~~IvsGAvaeR~k~~~~li~~~l~~~vY~~~-~w~---~L~~lG~~DFAGs~vVH~~gG~aaLa~a~vLG~R 207 (490)
T 3hd6_A 132 NADFCVASVCVAFGAVLGKVSPIQLLIMTFFQVTLFAVN-EFI---LLNLLKVKDAGGSMTIHTFGAYFGLTVTRILYRR 207 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH-HHH---HHTTSCCCCTTCTTTTHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh-HHH---HHhccCceeecCceeeeHHHHHHHHHHHHhcCCc
Confidence 333344444445566667888888777777765554332 222 1234799999999999999999998777776644
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=11.60 E-value=1e+03 Score=23.13 Aligned_cols=26 Identities=12% Similarity=-0.102 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Q 011335 264 ILNTNVAAATSLLVWTCLDVIFFGKP 289 (488)
Q Consensus 264 ~~NT~la~a~g~l~~~~~~~~~~~k~ 289 (488)
..+.......+.+...+.+++.+||.
T Consensus 326 ~~~~~~~~~~~~~~~~l~~r~~~r~~ 351 (491)
T 4aps_A 326 SLNPLFIMLYTPFFAWLWTAWKKNQP 351 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred ccchHHHHHHHHHHHHHHHHHhccCC
Confidence 34444444444455555555544443
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=10.97 E-value=3e+02 Score=19.24 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=10.2
Q ss_pred cchHHHHHHHHhhhhHH
Q 011335 312 VQSWAAIVMGILSGSIP 328 (488)
Q Consensus 312 v~pw~A~iiG~iag~i~ 328 (488)
-++-.++..|+++|++.
T Consensus 6 ~s~~~aIA~gVVgGv~~ 22 (44)
T 2l2t_A 6 HARTPLIAAGVIGGLFI 22 (44)
T ss_dssp SCSSHHHHHHHHHHHHH
T ss_pred CCCcceEEEeehHHHHH
Confidence 34456666777776654
No 10
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=10.60 E-value=6.5e+02 Score=25.88 Aligned_cols=19 Identities=5% Similarity=0.198 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 011335 409 WNLVSTTIILLAIRIFIPL 427 (488)
Q Consensus 409 ws~~~~~i~~~~l~~~~~l 427 (488)
.+++++.++..++++..+-
T Consensus 432 ~g~~va~v~Y~~l~~~~~~ 450 (501)
T 2jln_A 432 TGLIAALLLHIPAMRWVAK 450 (501)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCch
Confidence 3455566677777776544
Done!