RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= 011335
         (488 letters)



>gnl|CDD|233145 TIGR00836, amt, ammonium transporter.  The Ammonium Transporter
           (Amt) Family (TC 2.A.49) All functionally characterized
           members of the Amt family are ammonia or ammonium uptake
           transporters. Some, but not others, also transport
           methylammonium. The mechanism of energy coupling, if
           any, to methyl-NH2 or NH3 uptake by the AmtB protein of
           E. coli is not entirely clear. NH4+ uniport driven by
           the pmf, energy independent NH3 facilitation, and
           NH4+/K+ antiport have been proposed as possible
           transport mechanisms. In Corynebacterium glutamicum and
           Arabidopsis thaliana, uptake via the Amt1 homologues of
           AmtB has been reported to be driven by the pmf
           [Transport and binding proteins, Cations and iron
           carrying compounds].
          Length = 403

 Score =  350 bits (901), Expect = e-117
 Identities = 154/425 (36%), Positives = 223/425 (52%), Gaps = 27/425 (6%)

Query: 27  AWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGD 86
           AW + A+ LV     PG  ++YA +V+ K  +N     L  FA   + W L  Y +AFG+
Sbjct: 2   AWLLIAAALVFFM-QPGFALLYAGLVRSKNVLNIMMKNLLDFAIGSLLWWLFGYSLAFGE 60

Query: 87  QLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVI 146
              P  G      G   L                 ++            FQ  FAAI   
Sbjct: 61  DN-PINGFIGT--GGFGLKNFL---------YPGKISLAGTLPDLLFFLFQMMFAAIAAT 108

Query: 147 LLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWG-GGFLYQWGVIDYSGGYVIHVSSG 205
           +++G+V  RM   A++ F  LW    Y   A  +WG GG+LY+ GV+D++GG V+H+  G
Sbjct: 109 IISGAVAERMKFSAYLLFSVLWTTLVYPPVAHWVWGGGGWLYKLGVLDFAGGGVVHIVGG 168

Query: 206 IAGLTAAYWVGPRLKSDKE--RFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIA 263
           +AGL AA  +GPR+          P+NV L++ G  +LW GW GFN G+  AA+  ++ A
Sbjct: 169 VAGLAAALVLGPRIGRFPRPVAIRPHNVPLVVLGTFILWFGWFGFNAGSALAANGTAAYA 228

Query: 264 ILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGIL 323
            +NTN+AAA   L W  +D +  GKP+++GA  G++ GLV ITPG G+V  W AI++G++
Sbjct: 229 AVNTNLAAAAGGLTWLLIDWLKHGKPTLLGACNGILAGLVAITPGCGVVTPWGAIIIGLV 288

Query: 324 SGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVTGLLGGLLTGLFAEPQLCKLTLPEPT 383
           +G + ++ +  L KK     ++DD L  F  H V G+ G + TGLFA P++  +      
Sbjct: 289 AGVLCYLAVSKLKKK----LKIDDPLDAFAVHGVGGIWGLIATGLFAAPKVGGVGT---- 340

Query: 384 RGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQLAIGDD-AVH 442
            G   GG  G Q   Q++G   +IAW  V T IIL  +   I LR+ EE+  IG D A H
Sbjct: 341 -GGLLGG-NGKQLGVQLIGIAAIIAWAFVVTFIILKILDKTIGLRVSEEEEKIGLDLAEH 398

Query: 443 GEEAY 447
           GE AY
Sbjct: 399 GEFAY 403


>gnl|CDD|223083 COG0004, AmtB, Ammonia permease [Inorganic ion transport and
           metabolism].
          Length = 409

 Score =  316 bits (813), Expect = e-104
 Identities = 158/429 (36%), Positives = 232/429 (54%), Gaps = 29/429 (6%)

Query: 21  LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCY 80
           ++ GD+AW + ++ LV + + PGL + Y  +V+KK  +N+      AFA V + W+ V Y
Sbjct: 1   MDSGDTAWMLLSAALVLLMT-PGLALFYGGLVRKKNVLNTLMQSFVAFAIVTLLWIFVGY 59

Query: 81  RMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTF 140
            +AFG     F G                     + +    V             FQ  F
Sbjct: 60  SLAFGPDGNGFIGNLDQFFL--------------NGLGFAAVAGGAGIPELVFFAFQMMF 105

Query: 141 AAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWG-GGFLYQWGVIDYSGGYV 199
           AAIT  L++G+V  RM   A++ F  LW    Y   A  +WG GG+L   G +D++GG V
Sbjct: 106 AAITPALISGAVAERMKFSAYLLFSVLWSTLVYPPVAHWVWGGGGWLALLGALDFAGGTV 165

Query: 200 IHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIA 259
           +H+++G A L AA  +G R+       PP+N+ L++ GA LLW GW GFN G+  AA+  
Sbjct: 166 VHINAGFAALAAALVLGKRIGGKPVAIPPHNLPLVVLGAALLWFGWFGFNAGSALAANGV 225

Query: 260 SSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIV 319
           +++A +NTN+AAA   L W  ++ +  GKPS++GA  G + GLV ITP AG V  W A++
Sbjct: 226 AALAFVNTNLAAAAGALGWMLIEWLRNGKPSLLGAASGAVAGLVAITPAAGFVSPWGALI 285

Query: 320 MGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVTGLLGGLLTGLFAEPQLCKLTL 379
           +G+++G I +  + +L KK      VDD L VF  H V G++G +LTG+FA P +     
Sbjct: 286 IGLIAGVICYFAVKLLKKK----LGVDDALDVFGVHGVGGIVGAILTGIFAAPAVGGGG- 340

Query: 380 PEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQLAIG-D 438
                G FYG  GGVQ   Q++G L  I +  V T IIL  +++ I LR+ EE+   G D
Sbjct: 341 -----GLFYG--GGVQLGVQLLGVLVTIVYAFVVTFIILKVLKLIIGLRVSEEEELEGLD 393

Query: 439 DAVHGEEAY 447
            + HGE AY
Sbjct: 394 ISEHGESAY 402


>gnl|CDD|216185 pfam00909, Ammonium_transp, Ammonium Transporter Family. 
          Length = 399

 Score =  219 bits (559), Expect = 2e-66
 Identities = 124/428 (28%), Positives = 196/428 (45%), Gaps = 41/428 (9%)

Query: 30  MTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGD--Q 87
           +  +  + I   PG  ++ + +V+ K  +N  +      A  ++ +    Y +AFG    
Sbjct: 3   ILLAAALVIFMQPGFALLESGLVRSKNVLNILYKNFQDVAIGVLAYWGFGYSLAFGKRYG 62

Query: 88  LLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVIL 147
              F G                       V    +             FQ  FAA  + +
Sbjct: 63  FSGFIG--------------------NLGVSAAGIQWGTLPDGL-FFLFQMMFAATAITI 101

Query: 148 LAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWG-GGFLYQWGV-IDYSGGYVIHVSSG 205
           ++G+V  R+   A++ F  L     Y   A  +WG GG+L + GV +D++G  V+H+  G
Sbjct: 102 VSGAVAERIKFSAYLLFSALLGTLVYPPVAHWVWGEGGWLAKLGVLVDFAGSTVVHIFGG 161

Query: 206 IAGLTAAYWVGPRL---KSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAA-HIASS 261
            AGL AA  +GPR+       E   P+N+   + G  LLW GW GFN G+   A   A +
Sbjct: 162 YAGLAAALVLGPRIGRFTDKNEAITPHNLPFAVLGTFLLWFGWFGFNAGSALTANGRARA 221

Query: 262 IAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMG 321
           IA +NTN+AAA   L    +  +  GKP+++G   G + GLV IT   G+V  W A+++G
Sbjct: 222 IAAVNTNLAAAGGGLTALLISRLKTGKPNMLGLANGALAGLVAITAACGVVTPWGALIIG 281

Query: 322 ILSGSI-PWVTMMILHKKCSLLQQVDDTLAVFHTHAVTGLLGGLLTGLFAEPQLCKLTLP 380
           +++G +       +  K       +DD L VF  H V G+ GG+  G+FA P    +   
Sbjct: 282 LIAGVVSVLGYKKLKEKL-----GIDDPLDVFPVHGVGGIWGGIAVGIFAAP---YVPTS 333

Query: 381 EPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQLAIGDD- 439
               G   G  G  Q   Q++G   ++A+    T I+ L + + + LR+ EE+  +G D 
Sbjct: 334 GIYGGLLGG--GFKQLGVQLIGIAVILAYAFGVTFILGLLLGLTLGLRVSEEEEEVGLDV 391

Query: 440 AVHGEEAY 447
           A HGE AY
Sbjct: 392 AEHGETAY 399


>gnl|CDD|182630 PRK10666, PRK10666, ammonium transporter; Provisional.
          Length = 428

 Score =  216 bits (553), Expect = 2e-65
 Identities = 145/433 (33%), Positives = 220/433 (50%), Gaps = 29/433 (6%)

Query: 16  AVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICW 75
           A P   +K D+A+ M  + LV   ++PG+ + Y  +++ K  ++    V   FA V I W
Sbjct: 22  AAPAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILW 81

Query: 76  VLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVY 135
           V+  Y +AFG+    F+G          L            V G        Y     V 
Sbjct: 82  VVYGYSLAFGEG-NAFFG----NFNWLMLKNI-----ELTAVMGS------IYQYIH-VA 124

Query: 136 FQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYS 195
           FQ +FA ITV L+ G++  R+   A + FV +WL  SY   A  +WGGG L   G +D++
Sbjct: 125 FQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASDGALDFA 184

Query: 196 GGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYA 255
           GG V+H+++ +AGL  AY +G R+   KE F P+N+ ++  G  +L++GW GFN G+  A
Sbjct: 185 GGTVVHINAAVAGLVGAYLLGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGA 244

Query: 256 AHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSW 315
           A+  +++A +NT VA A ++L W   +    GKPS++GA  G + GLV +TP  G V   
Sbjct: 245 ANEIAALAFVNTVVATAAAILGWVFGEWALRGKPSLLGACSGAIAGLVGVTPACGYVGVG 304

Query: 316 AAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVTGLLGGLLTGLFAEPQLC 375
            A+++G+++G      + +L +      +VDD   VF  H V G++G +LTG+FA   L 
Sbjct: 305 GALIIGVVAGLAGLWGVTMLKR----WLRVDDPCDVFGVHGVCGIVGCILTGIFAASSLG 360

Query: 376 KLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQLA 435
            +   E       G   G Q L Q+      I W+ V   I      + + LR+PEEQ  
Sbjct: 361 GVGYAE-------GVTMGHQVLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQER 413

Query: 436 IGDDA-VHGEEAY 447
            G D   HGE AY
Sbjct: 414 EGLDVNSHGENAY 426


>gnl|CDD|234292 TIGR03644, marine_trans_1, probable ammonium transporter, marine
           subtype.  Members of this protein family are well
           conserved subclass of putative ammonimum transporters,
           belonging to the much broader set of
           ammonium/methylammonium transporter described by
           TIGR00836. Species with this transporter tend to be
           marine bacteria. Partial phylogenetic profiling (PPP)
           picks a member of this protein family as the single
           best-scoring protein vs. a reference profile for the
           marine environment Genome Property for a large number of
           different query genomes. This finding by PPP suggests
           that this transporter family represents an important
           adaptation to the marine environment.
          Length = 404

 Score =  128 bits (323), Expect = 1e-32
 Identities = 103/396 (26%), Positives = 169/396 (42%), Gaps = 48/396 (12%)

Query: 64  VLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVT 123
            L+A A   I ++LV Y + +    +   G     LG   L     V +     +G    
Sbjct: 44  ALFAIAC--IMYLLVGYNIMYPGGGIFLGG----ILGSFLLGADNPVGDLIAGFEG---- 93

Query: 124 TEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGG 183
            +  Y+  +  +FQ  F A  + +++G+V  RM +  ++ F  +   F Y +     WGG
Sbjct: 94  -DADYSSGSDFFFQVVFVATAMSIVSGAVAERMKLWPFLLFAVVLTGFIYPIEGSWTWGG 152

Query: 184 GFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRL---KSDKE--RFPPNNVLLMLAGA 238
           G+L   G  D++G  ++H++   A L     +GPR      + E    P +N+ L   G 
Sbjct: 153 GWLDDLGFSDFAGSGIVHMAGAAAALAGVLLLGPRKGKYGKNGEVNPIPGSNLPLATLGT 212

Query: 239 GLLWMGWSGFNGGAPYAAHIASSIA-----ILNTNVAAATSLLVWTCLDVIFFGKPSVIG 293
            +LWMGW GFNGG+  A    +          NTN AAA   +    L  + FGK  +  
Sbjct: 213 FILWMGWFGFNGGSQLALSDVADANAVARIFANTNAAAAGGAIAALLLTKLLFGKADLTM 272

Query: 294 AVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFH 353
            + G + GLV IT         AA ++G + G I   ++++L K      ++DD +    
Sbjct: 273 VLNGALAGLVAITAEPLTPSPLAATLIGAVGGVIVVFSIVLLDK-----LKIDDPVGAIS 327

Query: 354 THAVTGLLGGLLTGLFAEPQLCKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVS 413
            H V G+ G L+  +                       G   F  Q++GA  + AW  V+
Sbjct: 328 VHGVAGIWGTLVVPI---------------------TNGDASFGAQLIGAATIFAWVFVT 366

Query: 414 TTIILLAIRIFIPLRMPEEQLAIGDDAVH-GEEAYA 448
           + I+   ++  + +R+ EE+   G D    G EAY 
Sbjct: 367 SLIVWFILKATMGIRVSEEEEYEGLDIAECGMEAYP 402


>gnl|CDD|173974 cd08209, RLP_DK-MTP-1-P-enolase,
           2,3-diketo-5-methylthiopentyl-1-phosphate enolase.
           Ribulose bisphosphate carboxylase like proteins (RLPs)
           similar to B. subtilis YkrW protein, have been
           identified as 2,3-diketo-5-methylthiopentyl-1-phosphate
           enolases. They catalyze the tautomerization of
           2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P).
           This is an important step in the methionine salvage
           pathway in which 5-methylthio-D-ribose (MTR) derived
           from 5'-methylthioadenosine is converted to methionine.
          Length = 391

 Score = 31.5 bits (72), Expect = 0.99
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 352 FHTHAVTGLLGGLLTGLFA------EPQLCKLTLPEPTRGAFYGGKGGVQFLKQIVGA 403
           +    V+G +  LLT +F       + +L  L LPE    AF G K G++ ++Q +G 
Sbjct: 64  YPLINVSGDIPALLTTIFGKLSLDGKIKLVDLRLPEEFGRAFPGPKFGIEGIRQRLGV 121


>gnl|CDD|216165 pfam00871, Acetate_kinase, Acetokinase family.  This family
           includes acetate kinase, butyrate kinase and
           2-methylpropanoate kinase.
          Length = 387

 Score = 31.2 bits (71), Expect = 1.2
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 6/57 (10%)

Query: 418 LLAIRIFIPLRMPEEQLAIGDDAVH---GEEA--YAL-WGDGEKYDPRKHGWHGSSY 468
           L+ I I   L  P + +A+ D A H     EA  YAL +   E++  R++G+HG+S+
Sbjct: 125 LIGIEIADKLLPPVKNVAVFDTAFHQTMPPEAYLYALPYLWYEEHGIRRYGFHGTSH 181


>gnl|CDD|237913 PRK15119, PRK15119, undecaprenyl-phosphate
           alpha-N-acetylglucosaminyl 1-phosphate transferase;
           Provisional.
          Length = 365

 Score = 30.4 bits (69), Expect = 2.1
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 142 AITVILLAGSVLGRMNIRA-WMAFVPLWLMFSYTVGAFSLWG 182
           A  +I LA ++L  + +   +  FVP W+M    + AF L+G
Sbjct: 294 AFVLITLAAALLASIGVLGEYSHFVPEWVMLVLFLLAFFLYG 335


>gnl|CDD|215604 PLN03151, PLN03151, cation/calcium exchanger; Provisional.
          Length = 650

 Score = 29.7 bits (67), Expect = 4.0
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 4/45 (8%)

Query: 133 LVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGA 177
           L +F FT  ++ VIL+ G V     +   +AFV +++++++ V A
Sbjct: 249 LCFFLFTLVSLLVILMVGKV----TVGGAIAFVSIYVVYAFLVAA 289


>gnl|CDD|237328 PRK13274, mdoG, glucan biosynthesis protein G; Provisional.
          Length = 516

 Score = 29.5 bits (67), Expect = 5.0
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 5/43 (11%)

Query: 205 GIAGLTAAYWVGPRLKSDKERFPPN----NVLLMLAGAG-LLW 242
           GIA LT+ +  GP   S  + F P     + LL+  G G  LW
Sbjct: 253 GIAPLTSMFLFGPNQPSPADDFRPEVHDSDGLLIHTGNGEWLW 295


>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
           Family protein.  [Transport and binding proteins,
           Other].
          Length = 617

 Score = 29.2 bits (66), Expect = 5.1
 Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 11/66 (16%)

Query: 127 FYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAW-----------MAFVPLWLMFSYTV 175
            +   T + FQ  F  I V      V  R                 +A +PL+++     
Sbjct: 396 LFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALF 455

Query: 176 GAFSLW 181
            + + W
Sbjct: 456 TSITYW 461


>gnl|CDD|188365 TIGR03675, arCOG00543, arCOG00543 universal archaeal
           KH-domain/beta-lactamase-domain protein.  This family of
           proteins is universal in the archaea and consistsof an
           N-terminal type-1 KH-domain (pfam00013) a central
           beta-lactamase-domain (pfam00753) with a C-terminal
           motif associated with RNA metabolism (pfam07521).
           KH-domains are associated with RNA-binding, so taken
           together, this protein is a likely metal-dependent
           RNAase. This family was defined in as arCOG01782.
          Length = 630

 Score = 29.1 bits (66), Expect = 6.4
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 282 DVIFFGKPSVIGAVQGMMTG 301
           ++I   +P++I A  GM+ G
Sbjct: 488 EIIESDEPAIILATSGMLNG 507


>gnl|CDD|219089 pfam06570, DUF1129, Protein of unknown function (DUF1129).  This
           family consists of several hypothetical bacterial
           proteins of unknown function.
          Length = 206

 Score = 28.4 bits (64), Expect = 6.6
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 194 YSGGYVIHVSSGIAGLTAAY---WVGPRLKSDKERFPPNNVLLMLAGAGLLWMGW 245
           YSG   + ++S + GL   Y   ++   LK   +R P    LL+L  A ++WM  
Sbjct: 109 YSGITTLLLTSLVGGLAMYYMYRYLYRYLKDKSKRPPWWKSLLILVLAVVVWMAV 163


>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed.
          Length = 451

 Score = 28.7 bits (65), Expect = 8.2
 Identities = 8/17 (47%), Positives = 10/17 (58%), Gaps = 1/17 (5%)

Query: 198 YVIHVSSGIAGLTAAYW 214
             I +  GI GL+AAY 
Sbjct: 3   VAI-IGGGITGLSAAYR 18


>gnl|CDD|233603 TIGR01862, N2-ase-Ialpha, nitrogenase component I, alpha chain.
           This model represents the alpha chain of all three
           varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of
           nitrogenase [Central intermediary metabolism, Nitrogen
           fixation].
          Length = 443

 Score = 28.6 bits (64), Expect = 9.2
 Identities = 11/33 (33%), Positives = 14/33 (42%)

Query: 199 VIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNV 231
           +IH+S G  G T   W   R  SD E      +
Sbjct: 52  MIHISHGPVGCTYYTWGTKRYPSDNENGVGAFL 84


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.139    0.451 

Gapped
Lambda     K      H
   0.267   0.0792    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,091,208
Number of extensions: 2656534
Number of successful extensions: 3903
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3847
Number of HSP's successfully gapped: 127
Length of query: 488
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 387
Effective length of database: 6,457,848
Effective search space: 2499187176
Effective search space used: 2499187176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.2 bits)