RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 011335
         (488 letters)



>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli
           [TaxId: 562]}
          Length = 383

 Score =  198 bits (504), Expect = 2e-59
 Identities = 125/409 (30%), Positives = 200/409 (48%), Gaps = 28/409 (6%)

Query: 21  LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCY 80
            +K D+A+ M  + LV   ++PG+ + Y  +++ K  ++    V   FA V I WV+  Y
Sbjct: 3   ADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGY 62

Query: 81  RMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTF 140
            +A G+    F       L    L                             V FQ +F
Sbjct: 63  SLASGEGNNFFGNINWLMLKNIELTAVM-----------------GSIYQYIHVAFQGSF 105

Query: 141 AAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVI 200
           A ITV L+ G++  R+   A + FV +WL  SY   A  +WGGG L   G +D++GG V+
Sbjct: 106 ACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVV 165

Query: 201 HVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIAS 260
           H+++ IAGL  AY +G R+   KE F P+N+ ++  G  +L++GW GFN G+   A+  +
Sbjct: 166 HINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIA 225

Query: 261 SIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVM 320
           ++A +NT VA A ++L W   +    G PS++GA  G + GLV +TP  G +    A+++
Sbjct: 226 ALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALII 285

Query: 321 GILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVTGLLGGLLTGLFAEPQLCKLTLP 380
           G+++G      + +L +      +VDD   VF  H V G++G ++TG+FA   L  +   
Sbjct: 286 GVVAGLAGLWGVTMLKRLL----RVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGV--- 338

Query: 381 EPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRM 429
               G   G   G Q L Q+      I W+ V   I      + + LR+
Sbjct: 339 ----GFAEGVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRV 383


>d1saza1 c.55.1.2 (A:1-172) butyrate kinase 2 {Thermotoga maritima
           [TaxId: 2336]}
          Length = 172

 Score = 32.7 bits (75), Expect = 0.047
 Identities = 10/56 (17%), Positives = 13/56 (23%), Gaps = 10/56 (17%)

Query: 418 LLAIRIFIPLRMPEEQLAIGDDAVHGE---EA--YALWGDGEKYDPRKHGWHGSSY 468
           L AI              + D  V  E    A              RK  +H  + 
Sbjct: 108 LGAIIAHRFSSETGVPAYVVDPVVVDEMEDVARVSGH-----PNYQRKSIFHALNQ 158


>d1txka2 b.30.5.9 (A:23-396) Glucans biosynthesis protein G (MdoG,
           OpgG), N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 374

 Score = 28.5 bits (64), Expect = 1.9
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 205 GIAGLTAAYWVGPRLKSDKERFPPN----NVLLMLAGAG-LLW 242
           G+A LT+ +  GP   S    + P     N L + AG G  +W
Sbjct: 224 GVAPLTSMFLFGPNQPSPANNYRPELHDSNGLSIHAGNGEWIW 266


>d2e1za1 c.55.1.2 (A:4-192) Propionate kinase {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 189

 Score = 26.5 bits (58), Expect = 6.4
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 14/67 (20%)

Query: 410 NLVSTTIILLAIRIF--IPLRMPEEQLAIGDDAVHGEE-----AYAL-WGDGEKYDPRKH 461
           N  + + I  A  +F  +       Q+A+ D + H         Y L W        R++
Sbjct: 116 NYANLSGIDAARHLFPAVR------QVAVFDTSFHQTLAPEAYLYGLPWEYFSSLGVRRY 169

Query: 462 GWHGSSY 468
           G+HG+S+
Sbjct: 170 GFHGTSH 176


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.451 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,895,849
Number of extensions: 87975
Number of successful extensions: 279
Number of sequences better than 10.0: 1
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 23
Length of query: 488
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 399
Effective length of database: 1,185,626
Effective search space: 473064774
Effective search space used: 473064774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.1 bits)