Query 011336
Match_columns 488
No_of_seqs 539 out of 2144
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 06:01:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011336.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011336hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9s_A UVB-resistance protein 100.0 3.1E-75 1.1E-79 589.0 45.0 368 106-481 11-380 (406)
2 3kci_A Probable E3 ubiquitin-p 100.0 1.2E-72 4E-77 567.2 34.9 364 117-488 7-375 (389)
3 1a12_A RCC1, regulator of chro 100.0 4.6E-70 1.6E-74 553.1 39.5 354 115-479 12-386 (413)
4 3mvd_K Regulator of chromosome 100.0 2.1E-69 7.3E-74 550.2 40.9 355 109-478 22-394 (423)
5 3of7_A Regulator of chromosome 100.0 8.7E-69 3E-73 552.1 36.7 360 112-479 11-427 (473)
6 3kci_A Probable E3 ubiquitin-p 100.0 2.2E-68 7.7E-73 536.0 33.6 368 74-449 14-388 (389)
7 1a12_A RCC1, regulator of chro 100.0 1.1E-66 3.7E-71 528.3 38.3 369 74-451 21-412 (413)
8 3mvd_K Regulator of chromosome 100.0 2.1E-64 7.3E-69 513.4 42.2 363 73-450 36-420 (423)
9 4d9s_A UVB-resistance protein 100.0 1.4E-64 4.7E-69 511.1 38.8 320 162-488 15-335 (406)
10 3of7_A Regulator of chromosome 100.0 2.1E-63 7E-68 512.1 37.5 361 77-447 26-449 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 9.3E-54 3.2E-58 409.3 30.2 257 107-452 20-276 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 2.1E-52 7.3E-57 399.9 28.9 252 129-465 2-253 (282)
13 2ovr_B FBW7, F-BOX/WD repeat p 99.1 9.5E-07 3.2E-11 89.1 37.1 362 9-458 18-391 (445)
14 1p22_A F-BOX/WD-repeat protein 99.0 2.1E-07 7.1E-12 93.8 27.1 376 10-459 11-415 (435)
15 3v7d_B Cell division control p 98.8 2.7E-05 9.3E-10 78.6 36.9 371 9-458 14-421 (464)
16 1fs1_A SKP2 F-BOX, cyclin A/CD 97.6 1.5E-05 5.2E-10 54.3 1.3 38 7-46 6-43 (53)
17 3l2o_B F-box only protein 4; s 96.9 9.1E-05 3.1E-09 68.6 -1.6 36 9-46 4-39 (312)
18 4gbf_A Phikz131; 7-bladed beta 96.3 0.0085 2.9E-07 53.4 6.8 70 164-247 310-379 (400)
19 4gbf_A Phikz131; 7-bladed beta 96.0 0.014 4.6E-07 52.1 6.9 71 111-195 309-380 (400)
20 2e31_A FBS1, F-box only protei 95.7 0.0033 1.1E-07 58.8 1.9 51 7-68 48-99 (297)
21 1p22_A F-BOX/WD-repeat protein 95.7 1.8 6.1E-05 42.5 32.7 229 164-456 135-363 (435)
22 2zwa_A Leucine carboxyl methyl 94.8 2.8 9.5E-05 44.3 21.3 150 225-401 441-615 (695)
23 1k3i_A Galactose oxidase precu 94.1 6.6 0.00023 41.0 26.4 72 333-406 458-534 (656)
24 1k3i_A Galactose oxidase precu 93.8 6.1 0.00021 41.3 21.3 73 384-461 457-534 (656)
25 2ovr_B FBW7, F-BOX/WD repeat p 93.0 7.2 0.00025 38.0 37.1 227 112-402 161-390 (445)
26 1gxr_A ESG1, transducin-like e 92.5 6.4 0.00022 36.2 32.3 274 118-458 9-296 (337)
27 2zwa_A Leucine carboxyl methyl 92.3 2 6.7E-05 45.5 14.7 18 278-295 598-615 (695)
28 2ast_B S-phase kinase-associat 90.9 0.064 2.2E-06 51.1 1.2 37 8-46 7-43 (336)
29 3no0_A DNA gyrase subunit A; D 90.8 9.8 0.00034 34.9 22.6 232 174-459 3-247 (276)
30 3k26_A Polycomb protein EED; W 88.4 16 0.00053 33.9 29.4 302 112-456 20-364 (366)
31 4aez_A CDC20, WD repeat-contai 87.7 20 0.00067 34.3 26.6 148 165-350 96-247 (401)
32 3ii7_A Kelch-like protein 7; p 83.2 19 0.00065 32.9 13.5 18 121-138 48-65 (306)
33 4a11_B DNA excision repair pro 83.1 31 0.0011 32.4 29.3 208 163-403 44-276 (408)
34 3uc1_A DNA gyrase subunit A; D 82.6 32 0.0011 32.3 25.1 215 221-458 49-279 (327)
35 4g56_B MGC81050 protein; prote 82.4 33 0.0011 32.2 28.4 231 111-402 95-342 (357)
36 3odt_A Protein DOA1; ubiquitin 81.9 29 0.00097 31.2 33.1 266 112-458 20-296 (313)
37 1gxr_A ESG1, transducin-like e 81.9 30 0.001 31.4 31.0 198 169-401 8-212 (337)
38 3v7d_B Cell division control p 81.5 40 0.0014 32.6 35.0 240 111-402 163-420 (464)
39 2xyi_A Probable histone-bindin 80.9 41 0.0014 32.4 26.0 257 112-401 130-408 (430)
40 2p1m_B Transport inhibitor res 80.8 0.36 1.2E-05 49.8 0.4 35 9-45 5-40 (594)
41 4aez_A CDC20, WD repeat-contai 80.4 41 0.0014 32.0 34.0 267 115-458 98-380 (401)
42 3mmy_A MRNA export factor; mRN 79.5 38 0.0013 31.1 24.5 191 162-402 39-246 (368)
43 3no0_A DNA gyrase subunit A; D 75.9 47 0.0016 30.3 25.1 207 172-409 35-252 (276)
44 3ogk_B Coronatine-insensitive 75.1 0.67 2.3E-05 47.8 0.4 33 10-44 13-46 (592)
45 1pgu_A Actin interacting prote 74.5 74 0.0025 31.8 31.2 149 269-455 447-611 (615)
46 1rwi_B Serine/threonine-protei 74.3 45 0.0015 29.3 16.5 16 386-401 237-252 (270)
47 3uc1_A DNA gyrase subunit A; D 74.1 58 0.002 30.5 27.4 223 168-410 49-286 (327)
48 2vpj_A Kelch-like protein 12; 73.9 51 0.0018 29.8 15.4 18 121-138 55-72 (301)
49 1zgk_A Kelch-like ECH-associat 73.1 34 0.0012 31.3 11.9 17 121-137 63-79 (308)
50 3jrp_A Fusion protein of prote 72.7 59 0.002 29.9 29.4 199 163-402 56-286 (379)
51 2xn4_A Kelch-like protein 2; s 72.2 50 0.0017 29.9 12.8 17 121-137 54-70 (302)
52 2xyi_A Probable histone-bindin 70.8 76 0.0026 30.4 21.4 195 127-350 202-409 (430)
53 3sfz_A APAF-1, apoptotic pepti 69.6 1.4E+02 0.0049 33.1 24.8 222 173-456 1016-1247(1249)
54 3jro_A Fusion protein of prote 67.7 1.2E+02 0.0043 31.7 25.7 157 163-351 54-238 (753)
55 3i2n_A WD repeat-containing pr 67.4 74 0.0025 28.9 26.5 193 112-350 67-290 (357)
56 4a11_B DNA excision repair pro 66.5 83 0.0028 29.2 32.8 300 112-462 45-369 (408)
57 1suu_A DNA gyrase subunit A; t 65.4 86 0.003 29.0 26.1 220 168-404 54-284 (312)
58 1r5m_A SIR4-interacting protei 65.1 90 0.0031 29.1 32.2 235 112-401 110-359 (425)
59 3vl1_A 26S proteasome regulato 63.5 99 0.0034 29.0 32.2 99 172-296 109-211 (420)
60 3mmy_A MRNA export factor; mRN 63.4 88 0.003 28.4 31.3 192 111-351 40-247 (368)
61 1sq9_A Antiviral protein SKI8; 63.1 97 0.0033 28.8 29.3 250 112-401 18-320 (397)
62 1yfq_A Cell cycle arrest prote 63.1 88 0.003 28.3 28.7 204 164-403 13-225 (342)
63 1xip_A Nucleoporin NUP159; bet 60.3 1.2E+02 0.0042 29.0 14.0 98 218-347 90-187 (388)
64 1q7f_A NHL, brain tumor CG1071 60.3 91 0.0031 27.5 22.2 16 334-349 210-225 (286)
65 3mkq_A Coatomer beta'-subunit; 59.7 1.7E+02 0.0058 30.5 25.2 230 164-458 15-259 (814)
66 3gre_A Serine/threonine-protei 59.5 1.2E+02 0.0041 28.7 17.2 111 163-297 169-292 (437)
67 1wp5_A Topoisomerase IV; broke 59.4 1.1E+02 0.0039 28.4 25.4 227 167-409 45-283 (323)
68 3no2_A Uncharacterized protein 58.8 1E+02 0.0035 27.6 20.6 111 163-294 88-203 (276)
69 3gre_A Serine/threonine-protei 58.4 1.3E+02 0.0043 28.6 23.2 157 163-350 112-291 (437)
70 3l6v_A GYRA, DNA gyrase subuni 57.6 1.3E+02 0.0045 28.6 27.5 136 158-302 41-185 (370)
71 3fvz_A Peptidyl-glycine alpha- 57.5 1.1E+02 0.0039 27.8 24.5 22 170-191 23-44 (329)
72 3k26_A Polycomb protein EED; W 57.3 1.1E+02 0.0039 27.7 29.3 209 162-403 18-260 (366)
73 3zwl_B Eukaryotic translation 57.2 1.1E+02 0.0039 27.7 32.1 198 112-349 34-247 (369)
74 4ery_A WD repeat-containing pr 56.8 1.1E+02 0.0038 27.4 29.3 172 127-350 43-222 (312)
75 1wp5_A Topoisomerase IV; broke 56.4 1.3E+02 0.0044 28.0 25.8 225 220-465 45-284 (323)
76 1q7f_A NHL, brain tumor CG1071 55.4 1.1E+02 0.0038 27.0 22.3 16 386-401 210-225 (286)
77 1sq9_A Antiviral protein SKI8; 53.7 1.4E+02 0.0047 27.6 26.4 257 163-458 17-322 (397)
78 3p6j_A De novo designed beta-t 53.2 88 0.003 25.2 13.4 106 269-398 30-138 (142)
79 3p6j_A De novo designed beta-t 52.4 91 0.0031 25.2 11.8 108 215-346 29-138 (142)
80 1zi0_A DNA gyrase subunit A; b 51.7 1.5E+02 0.005 27.3 26.1 216 220-459 48-278 (307)
81 2xn4_A Kelch-like protein 2; s 50.5 49 0.0017 30.0 8.2 17 121-137 101-117 (302)
82 2pm9_A Protein WEB1, protein t 49.5 1.6E+02 0.0056 27.3 24.0 120 217-350 69-196 (416)
83 4gqb_B Methylosome protein 50; 48.9 1.7E+02 0.0056 27.1 29.3 229 111-401 83-329 (344)
84 3no2_A Uncharacterized protein 46.8 1.6E+02 0.0054 26.3 22.7 164 269-464 88-267 (276)
85 1suu_A DNA gyrase subunit A; t 46.7 1.8E+02 0.006 26.8 27.3 263 173-459 9-284 (312)
86 3sjl_D Methylamine dehydrogena 44.2 2.2E+02 0.0075 27.2 20.0 270 156-454 63-349 (386)
87 2vpj_A Kelch-like protein 12; 43.8 1.8E+02 0.006 26.0 11.6 19 120-138 104-122 (301)
88 3l6v_A GYRA, DNA gyrase subuni 43.6 2.2E+02 0.0075 27.0 26.2 125 221-356 53-185 (370)
89 1rwi_B Serine/threonine-protei 43.3 1.6E+02 0.0055 25.4 14.4 16 386-401 195-210 (270)
90 2aq5_A Coronin-1A; WD40 repeat 42.0 2.2E+02 0.0075 26.5 24.1 154 221-401 40-205 (402)
91 3vl1_A 26S proteasome regulato 41.7 2.2E+02 0.0075 26.5 31.5 101 280-403 261-365 (420)
92 3jrp_A Fusion protein of prote 40.1 2.1E+02 0.0073 25.9 28.9 241 164-457 13-286 (379)
93 3odt_A Protein DOA1; ubiquitin 40.1 1.9E+02 0.0065 25.3 31.9 228 164-458 20-255 (313)
94 4asc_A Kelch repeat and BTB do 39.3 92 0.0031 28.3 8.3 18 120-137 140-157 (315)
95 3mkq_A Coatomer beta'-subunit; 38.7 3.5E+02 0.012 28.0 30.1 191 164-402 57-258 (814)
96 2woz_A Kelch repeat and BTB do 37.2 96 0.0033 28.2 8.0 17 121-137 49-65 (318)
97 3fvz_A Peptidyl-glycine alpha- 37.2 2.4E+02 0.0082 25.6 19.7 17 174-190 94-110 (329)
98 3sfz_A APAF-1, apoptotic pepti 36.9 4.7E+02 0.016 28.9 25.2 184 226-458 1016-1207(1249)
99 3bws_A Protein LP49; two-domai 36.8 2.7E+02 0.0092 26.0 19.8 27 164-190 171-199 (433)
100 3vu4_A KMHSV2; beta-propeller 36.8 2.5E+02 0.0086 25.8 21.2 158 269-458 101-271 (355)
101 3jro_A Fusion protein of prote 36.5 3.9E+02 0.013 27.8 25.9 198 164-403 11-238 (753)
102 3q7x_A De novo designed beta-t 36.5 1.1E+02 0.0039 24.2 7.1 104 166-293 9-114 (132)
103 1yfq_A Cell cycle arrest prote 36.1 2.4E+02 0.0081 25.2 30.8 160 163-351 57-225 (342)
104 2aq5_A Coronin-1A; WD40 repeat 35.3 2.8E+02 0.0095 25.8 29.2 152 168-349 40-205 (402)
105 1zvt_A Topoisomerase IV subuni 34.1 2.5E+02 0.0086 24.9 15.4 156 175-357 5-169 (256)
106 1zi0_A DNA gyrase subunit A; b 33.8 2.8E+02 0.0095 25.4 28.4 224 167-408 48-282 (307)
107 1xip_A Nucleoporin NUP159; bet 33.5 97 0.0033 29.8 7.5 69 371-457 86-154 (388)
108 2uvk_A YJHT; unknown function, 33.2 1.3E+02 0.0046 27.7 8.5 18 225-243 110-127 (357)
109 1pgu_A Actin interacting prote 32.4 3.7E+02 0.013 26.4 31.4 230 171-459 308-573 (615)
110 1zvt_A Topoisomerase IV subuni 31.9 2.7E+02 0.0093 24.7 15.3 119 328-459 40-164 (256)
111 3f3f_A Nucleoporin SEH1; struc 31.8 2.7E+02 0.0091 24.6 30.4 103 127-242 31-141 (351)
112 3vgz_A Uncharacterized protein 30.7 2.9E+02 0.01 24.7 27.7 17 441-457 317-334 (353)
113 2woz_A Kelch repeat and BTB do 30.1 1.6E+02 0.0056 26.6 8.3 17 121-137 102-118 (318)
114 1erj_A Transcriptional repress 29.7 3.4E+02 0.012 25.2 28.2 203 165-401 126-339 (393)
115 3zwl_B Eukaryotic translation 29.6 3.1E+02 0.011 24.6 26.6 199 164-401 34-247 (369)
116 4asc_A Kelch repeat and BTB do 29.1 1.6E+02 0.0054 26.7 8.0 17 121-137 91-107 (315)
117 1zvu_A Topoisomerase IV subuni 28.4 5.2E+02 0.018 26.9 12.0 123 169-302 511-638 (716)
118 4g56_B MGC81050 protein; prote 27.8 3.6E+02 0.012 24.7 32.7 234 164-460 96-345 (357)
119 3ii7_A Kelch-like protein 7; p 27.4 2E+02 0.0069 25.7 8.4 18 121-138 94-111 (306)
120 3sjl_D Methylamine dehydrogena 26.9 4.2E+02 0.014 25.2 17.3 170 113-294 72-253 (386)
121 2pm9_A Protein WEB1, protein t 25.6 3.9E+02 0.013 24.5 25.0 243 163-459 68-338 (416)
122 3i2n_A WD repeat-containing pr 25.3 3.6E+02 0.012 24.0 33.6 196 163-402 66-290 (357)
123 3vgz_A Uncharacterized protein 21.3 4.3E+02 0.015 23.4 24.2 17 386-402 317-334 (353)
124 1k8k_C P40, ARP2/3 complex 41 21.3 4.5E+02 0.015 23.6 32.2 207 164-403 54-274 (372)
No 1
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=3.1e-75 Score=588.96 Aligned_cols=368 Identities=30% Similarity=0.475 Sum_probs=335.4
Q ss_pred ccccCCCceEEEecCceeEee-eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCC-c
Q 011336 106 IVETSAGNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSG-Q 183 (488)
Q Consensus 106 ~~~~~~~i~~i~~G~~h~~~l-~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G-~ 183 (488)
+.....+|++|+||..|+++| ++|+||+||+|.+||||.+...+ ...|++++.....+|++|+||..|+++|+++| +
T Consensus 11 v~~~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~-~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~ 89 (406)
T 4d9s_A 11 VTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAED-RPSPTQLSALDGHQIVSVTCGADHTVAYSQSGME 89 (406)
T ss_dssp ----CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCC-EEEEEECGGGTTSCEEEEEECSSEEEEEETTTTE
T ss_pred CCCCccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCccc-CcCCEEecccCCCCEEEEEeCcceEEEEECCCCE
Confidence 334556799999999999999 99999999999999999998776 34566665555568999999999999999986 9
Q ss_pred EEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecCCeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCceeec
Q 011336 184 VFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIA 263 (488)
Q Consensus 184 vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~ 263 (488)
||+||.|.+||||.+.. .....|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.++......|.++.
T Consensus 90 v~~wG~n~~GqLG~g~~-~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 168 (406)
T 4d9s_A 90 VYSWGWGDFGRLGHGNS-SDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ 168 (406)
T ss_dssp EEEEECCGGGTTCSSSC-CCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred EEEEcCCCCcCCCCCCC-CccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEec
Confidence 99999999999999887 56788999999999999999999999999999999999999999999999998888999998
Q ss_pred CCCCCCCEEEEEeCCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCCCeEEEEeCCCc
Q 011336 264 PLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGY 343 (488)
Q Consensus 264 ~~~~~~~i~~i~~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~ 343 (488)
.+.. .+|++|+||.+|+++|+++|+||+||.|.+||||.+.......|.++..+. ..+|++|+||.+|+++|+++|+
T Consensus 169 ~~~~-~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~--~~~i~~va~G~~ht~~l~~~G~ 245 (406)
T 4d9s_A 169 AFEG-IRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTG--GEKMSMVACGWRHTISVSYSGA 245 (406)
T ss_dssp GGTT-CCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCST--TCCEEEEEECSSEEEEEETTCC
T ss_pred ccCC-CcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccC--CceEEEEEECCCcEEEEcCCCC
Confidence 7754 589999999999999999999999999999999999988888898887653 4589999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceE
Q 011336 344 VYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRI 423 (488)
Q Consensus 344 vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~ 423 (488)
||+||.|.+||||+++......|+++..+.+.+|++|+||.+|+++|+++|+||+||+|.+||||.+. ......|++
T Consensus 246 v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~---~~~~~~p~~ 322 (406)
T 4d9s_A 246 LYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN---NLDQCSPVQ 322 (406)
T ss_dssp EEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS---SSCEEEEEE
T ss_pred EEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCC---CCCCccCEE
Confidence 99999999999999999889999999999999999999999999999999999999999999999987 455678999
Q ss_pred cCccCCCCEEEEEecCCeEEEEEcCCCEEEEeCCCCCCCCCCCCCCcccceEEEcccc
Q 011336 424 LDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQEM 481 (488)
Q Consensus 424 v~~~~~~~v~~v~~G~~ht~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~ 481 (488)
++.+...+|++|+||.+|++||+++|+||+||.|.+||||+++..+...|+.|+....
T Consensus 323 v~~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~ 380 (406)
T 4d9s_A 323 VRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSV 380 (406)
T ss_dssp ECCGGGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGCS
T ss_pred EeccCCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCCCCCCcCCEEeeeecC
Confidence 9877778999999999999999999999999999999999999999999998876543
No 2
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.2e-72 Score=567.18 Aligned_cols=364 Identities=27% Similarity=0.428 Sum_probs=321.2
Q ss_pred EecCceeEee-eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCcEEEEeCCCCCcc
Q 011336 117 TTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCC 195 (488)
Q Consensus 117 ~~G~~h~~~l-~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gql 195 (488)
..-..+.+++ ++|+||+||.|.+||||.+.... ...|++++.....+|++|+||..|+++|+++|+||+||.|.+|||
T Consensus 7 ~~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~-~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqL 85 (389)
T 3kci_A 7 HSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAK-VKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRL 85 (389)
T ss_dssp --------------CEEEEEECTTSTTSSCSCSE-EEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTT
T ss_pred ccCcccceeECCCCeEEEeeCCCCccCCCCcCcc-ccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCC
Confidence 3344556677 99999999999999999876654 556777776666689999999999999999999999999999999
Q ss_pred cCCCCCCceeCCEEeccCCCCC--eEEEEecCCeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEE
Q 011336 196 GHRDTNRPIFRPRLVEALKGVP--CKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQ 273 (488)
Q Consensus 196 G~~~~~~~~~~p~~v~~~~~~~--i~~V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~ 273 (488)
|.+.. .....|.+++.+.+.+ +++|+||..|+++|+++|+||+||.|.+||||.++......|.++..+.. .+|++
T Consensus 86 G~g~~-~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~-~~i~~ 163 (389)
T 3kci_A 86 GIGGT-ESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRG-IEVVD 163 (389)
T ss_dssp SSSSS-CCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTT-SCEEE
T ss_pred CCCCc-CCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCC-CeEEE
Confidence 99976 5678899998877654 47889999999999999999999999999999999988889999988754 58999
Q ss_pred EEeCCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCC--CeEEEEeCCCcEEEEecCC
Q 011336 274 IAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD--EHVVALDSSGYVYTWGKGY 351 (488)
Q Consensus 274 i~~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~--~h~~~lt~~G~vy~wG~n~ 351 (488)
|+||..|+++|+++|+||+||.|.+||||.+.......|.+++.+. +.+|++|+||. .|+++|+++|+||+||.|.
T Consensus 164 va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~--~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~ 241 (389)
T 3kci_A 164 VAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ--GHRVVDIACGSGDAQTLCLTDDDTVWSWGDGD 241 (389)
T ss_dssp EEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT--TSCEEEEEECCSSCEEEEEETTTEEEEEECCG
T ss_pred EEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccC--CCeEEEEEEcCCCcEEEEEccCCEEEEEeCCC
Confidence 9999999999999999999999999999999988888898887663 45899999995 8999999999999999999
Q ss_pred CCCCCCCCCCCcccceeecCCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceEcCccCCCC
Q 011336 352 CGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHH 431 (488)
Q Consensus 352 ~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~ 431 (488)
+||||.++......|++++.+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+. ......|++++.+.+.+
T Consensus 242 ~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~---~~~~~~P~~v~~l~~~~ 318 (389)
T 3kci_A 242 YGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGS---DDHVRRPRQVQGLQGKK 318 (389)
T ss_dssp GGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSS---CCCEEEEEECGGGTTCC
T ss_pred CCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCC---CccccCCeEeccCCCCC
Confidence 999999999888999999999988999999999999999999999999999999999987 45677899999998889
Q ss_pred EEEEEecCCeEEEEEcCCCEEEEeCCCCCCCCCCCCCCcccceEEEccccccccCCC
Q 011336 432 VSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQEMEEDTGLA 488 (488)
Q Consensus 432 v~~v~~G~~ht~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~ia 488 (488)
|++|+||.+|+++++++|+||+||.|++||||+++..+...|+.|......++.+||
T Consensus 319 v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~v~~va 375 (389)
T 3kci_A 319 VIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVA 375 (389)
T ss_dssp EEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCCCEEE
T ss_pred EEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecccCCCCEEEEE
Confidence 999999999999999999999999999999999999999999999887776666654
No 3
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=4.6e-70 Score=553.07 Aligned_cols=354 Identities=24% Similarity=0.342 Sum_probs=308.3
Q ss_pred EEEecCceeEee-eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCcEEEEeCCCCC
Q 011336 115 QITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSF 193 (488)
Q Consensus 115 ~i~~G~~h~~~l-~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~g 193 (488)
+.+.+..|++++ .+|+||+||.|.+||||.+........|+++.. ..+|++|+||..|+++|+++|+||+||.|.+|
T Consensus 12 ~~~~~~~h~~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~--~~~i~~va~G~~hs~~l~~~G~v~~wG~n~~G 89 (413)
T 1a12_A 12 SKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSI--PEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEG 89 (413)
T ss_dssp -CCCCCCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECC--SSCEEEEEECSSEEEEEETTSCEEEEECCTTS
T ss_pred hhhhccccceeecCCCcEEEEECCCCCcCCCCCCccccccceEccC--CCCeEEEEeCCCeEEEEcCCCCEEEEECCCCC
Confidence 556678999999 999999999999999999987655556666654 46899999999999999999999999999999
Q ss_pred cccCCCCC-CceeCCEEeccCCCCCeEEEEecCCeeEEEEeCCcEEEEEC--CCCCccCCCCCCCC-CCceeecCCCCCC
Q 011336 194 CCGHRDTN-RPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGS--NTHGQLGHGDTLDR-PTPKSIAPLEEVG 269 (488)
Q Consensus 194 qlG~~~~~-~~~~~p~~v~~~~~~~i~~V~~G~~h~~~lt~~G~vy~wG~--n~~gqlG~~~~~~~-~~p~~i~~~~~~~ 269 (488)
|||.+... .....|.++.. ..+|++|+||.+|+++|+++|+||+||. |.+||||.++.... ..|.++... .
T Consensus 90 qLG~~~~~~~~~~~P~~v~l--~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v~~~---~ 164 (413)
T 1a12_A 90 ALGRDTSVEGSEMVPGKVEL--QEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLD---V 164 (413)
T ss_dssp TTCSCCCSTTGGGSCEECCC--CSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCS---S
T ss_pred CCCCCCCCCccccCCeEecC--CCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEecCC---C
Confidence 99998763 35678888854 2389999999999999999999999999 99999998876543 347777332 6
Q ss_pred CEEEEEeCCCeEEEEEcCCcEEEecCCCCCccCCCCCCC-----------CcCceeeeeccc---CCeeEEEEEeCCCeE
Q 011336 270 SVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHD-----------ELQPRAIQTFRR---KGIHVVRVSAGDEHV 335 (488)
Q Consensus 270 ~i~~i~~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~-----------~~~p~~i~~~~~---~~~~i~~i~~g~~h~ 335 (488)
+|++|+||.+|+++|+++|+||+||.|.+||||.+.... ...|..+..... ...+|++|+||.+|+
T Consensus 165 ~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs 244 (413)
T 1a12_A 165 PVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFT 244 (413)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEE
T ss_pred CEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEE
Confidence 899999999999999999999999999999999875421 245655543211 345899999999999
Q ss_pred EEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCC--CcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCC
Q 011336 336 VALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKS--HLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRG 413 (488)
Q Consensus 336 ~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~--~~i~~v~~G~~~t~~lt~~G~vy~wG~n~~gqLG~~~~~ 413 (488)
++|+++|+||+||.|.+||||.++......|++|..+.+ .+|++|+||.+|+++|+++|+||+||.|.+||||.+..
T Consensus 245 ~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~- 323 (413)
T 1a12_A 245 FAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEG- 323 (413)
T ss_dssp EEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTT-
T ss_pred EEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCC-
Confidence 999999999999999999999999888889999998876 67999999999999999999999999999999999853
Q ss_pred CCCceecceEcCccCCCCEEEEEecCCeEEEEEcCCCEEEEeCCCCCCCCCCCCCCcccceEEEcc
Q 011336 414 VSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQ 479 (488)
Q Consensus 414 ~~~~~~~P~~v~~~~~~~v~~v~~G~~ht~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~ 479 (488)
......|++++.+. +|++|+||.+|+++|+++|+||+||.|.+||||+++..+...|++|..+
T Consensus 324 -~~~~~~P~~v~~l~--~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~ 386 (413)
T 1a12_A 324 -AEEKSIPTLISRLP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGK 386 (413)
T ss_dssp -CCCEEEEEECCSSS--SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCST
T ss_pred -CccccCCEEecccC--ceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCCCCCcccCeEcccc
Confidence 34567899998776 8999999999999999999999999999999999999999999998753
No 4
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=2.1e-69 Score=550.25 Aligned_cols=355 Identities=21% Similarity=0.285 Sum_probs=304.2
Q ss_pred cCCCceEEEecCceeEee-eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCcEEEE
Q 011336 109 TSAGNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTC 187 (488)
Q Consensus 109 ~~~~i~~i~~G~~h~~~l-~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~w 187 (488)
....+.+|++|..|++++ ++|+||+||.|.+||||.+........|++ ++....|++|+||..|+++|+++|+||+|
T Consensus 22 ~~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~--v~~l~~v~~va~G~~h~~~l~~~G~v~~w 99 (423)
T 3mvd_K 22 PKAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSP--VAGIPDAVDISAGGMHNLVLTKSGDIYSF 99 (423)
T ss_dssp -------CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEE--CCSCSSEEEEEECSSEEEEEETTSCEEEE
T ss_pred ccceeeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeE--ccCCCCceEEeeCCCeEEEEeCCCeEEEe
Confidence 344578999999999999 999999999999999999976554444544 45556799999999999999999999999
Q ss_pred eCCCCCcccCCCCCC-ceeCCEEeccCCCCCeEEEEecCCeeEEEEeCCcEEEEEC--CCCCccCCCCCCCCCCceeecC
Q 011336 188 GDNSSFCCGHRDTNR-PIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGS--NTHGQLGHGDTLDRPTPKSIAP 264 (488)
Q Consensus 188 G~n~~gqlG~~~~~~-~~~~p~~v~~~~~~~i~~V~~G~~h~~~lt~~G~vy~wG~--n~~gqlG~~~~~~~~~p~~i~~ 264 (488)
|.|.+||||.+.... ....|.++... .+|++|+||..|+++|+++|+||+||. |.+||||.+......+|..+..
T Consensus 100 G~n~~GqLG~~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~ 177 (423)
T 3mvd_K 100 GCNDEGALGRDTSEDGSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLME 177 (423)
T ss_dssp ECCSSSTTCSCCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESST
T ss_pred ECCCCcCCCCCCcCCccccCCeEEcCC--CCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecC
Confidence 999999999987642 46788888743 479999999999999999999999999 9999999998877777766543
Q ss_pred CCCCCCEEEEEeCCCeEEEEEcCCcEEEecCCCCCccCCCCCC-----------CCcCceeeeecccCCeeEEEEEeCCC
Q 011336 265 LEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQH-----------DELQPRAIQTFRRKGIHVVRVSAGDE 333 (488)
Q Consensus 265 ~~~~~~i~~i~~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~-----------~~~~p~~i~~~~~~~~~i~~i~~g~~ 333 (488)
. .+|++|+||.+|+++|+++|+||+||.|.+||||.+... ....|.++... ...+|++|+||..
T Consensus 178 ~---~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~--~~~~v~~i~~g~~ 252 (423)
T 3mvd_K 178 G---TVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIIT--RAKPFEAIWATNY 252 (423)
T ss_dssp T---CCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCT--TCCCEEEEEEETT
T ss_pred C---CcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeec--CCccEEEEEECCc
Confidence 2 689999999999999999999999999999999997642 34577777654 3457999999999
Q ss_pred eEEEE-eCCCcEEEEecCCCCCCCCCCCCCc--ccceeecCCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCC
Q 011336 334 HVVAL-DSSGYVYTWGKGYCGALGHGDEIDK--TLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFP 410 (488)
Q Consensus 334 h~~~l-t~~G~vy~wG~n~~gqlG~~~~~~~--~~p~~v~~~~~~~i~~v~~G~~~t~~lt~~G~vy~wG~n~~gqLG~~ 410 (488)
|++++ +++|+||+||.|.+||||.+..... ..|.++. ..+|++|+||.+|+++|+++|+||+||.|.+||||.+
T Consensus 253 ~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g 329 (423)
T 3mvd_K 253 CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLG 329 (423)
T ss_dssp EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSS
T ss_pred EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC---CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCC
Confidence 99999 6999999999999999999655433 3555554 3469999999999999999999999999999999998
Q ss_pred CCCCCCceecceEcCccCCCCEEEEEecCCeEEEEEcCCCEEEEeCCCCCCCCCCCCCCcccceEEEc
Q 011336 411 DRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFI 478 (488)
Q Consensus 411 ~~~~~~~~~~P~~v~~~~~~~v~~v~~G~~ht~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~ 478 (488)
.. .+....|.+++.+.. +|++|+||.+|+++|+++|+||+||.|.+||||+++..+...|++|..
T Consensus 330 ~~--~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~ 394 (423)
T 3mvd_K 330 DV--KDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVS 394 (423)
T ss_dssp SC--CSCEEEEEECTTCCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSSCCEEEEEECCS
T ss_pred Cc--cccccCceEeccCCC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCCCCCCcccCeEEeC
Confidence 74 334568999988776 899999999999999999999999999999999999999999999985
No 5
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-69 Score=552.15 Aligned_cols=360 Identities=22% Similarity=0.339 Sum_probs=307.8
Q ss_pred CceEEEecCceeEee-eCCcEEEEeCCCCCCCCCCCCCc--eeeeeeEeeCC--CCCCEEEEEeCCceeEEEEcCCcEEE
Q 011336 112 GNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETT--QCVSFTRINFP--SAAHVVQVSASENHAAFVLQSGQVFT 186 (488)
Q Consensus 112 ~i~~i~~G~~h~~~l-~~g~vy~wG~n~~GqLG~g~~~~--~~~~p~~~~~~--~~~~i~~i~~G~~~~~~lt~~G~vy~ 186 (488)
.|....++..|++++ ++++||+||.|.+||||.+.... ....|+++++. ...+|++|+||..|+++|+++|+||+
T Consensus 11 ~~~~~~~~~~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~ 90 (473)
T 3of7_A 11 HIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWS 90 (473)
T ss_dssp TCCCCGGGGHHHHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEE
T ss_pred hhhhhcccccccccCCCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEE
Confidence 356677888999999 99999999999999999998543 34456666554 34589999999999999999999999
Q ss_pred EeCCCCCcccCCCCCCc----------------------eeCCEEecc--C----CCCCeEEEEecCCeeEEEEeCCcEE
Q 011336 187 CGDNSSFCCGHRDTNRP----------------------IFRPRLVEA--L----KGVPCKQVTAGLNFTGFLTIRGHVH 238 (488)
Q Consensus 187 wG~n~~gqlG~~~~~~~----------------------~~~p~~v~~--~----~~~~i~~V~~G~~h~~~lt~~G~vy 238 (488)
||.|.+||||.+..... ...|.+|+. + .+.+|++|+||.+|+++|+++|+||
T Consensus 91 wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy 170 (473)
T 3of7_A 91 WGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVY 170 (473)
T ss_dssp EECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEE
T ss_pred eECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEE
Confidence 99999999999876431 567888875 4 3678999999999999999999999
Q ss_pred EEEC--CCCCccCCCCC--CCCCCceeecCCCCCCCEEEEEeCCCeEEEEEcCCcEEEecCCCCCccCCCCCCC----Cc
Q 011336 239 TCGS--NTHGQLGHGDT--LDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHD----EL 310 (488)
Q Consensus 239 ~wG~--n~~gqlG~~~~--~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~----~~ 310 (488)
+||. +..||||.+.. ....+|.++..+.. .+|++|+||.+|+++|+++|+||+||.|.+||||.+.... ..
T Consensus 171 ~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~-~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~ 249 (473)
T 3of7_A 171 AWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSK-YNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTL 249 (473)
T ss_dssp EEECEEETTEEEESBTTTBSCEEEEEECCCCCS-SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTC
T ss_pred EeeCCcCCCCccCCCCCCCccccCcEEccccCC-CCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCcccccccccc
Confidence 9998 68999998544 34567888887754 5799999999999999999999999999999999986543 34
Q ss_pred CceeeeecccCCeeEEEEEeCCCeEEEEeCCCcEEEEecCCCCCCCCCCCC----CcccceeecCCCCCcEEEEEeeCCe
Q 011336 311 QPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEI----DKTLPEPLSSLKSHLAVQVCARKRK 386 (488)
Q Consensus 311 ~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~----~~~~p~~v~~~~~~~i~~v~~G~~~ 386 (488)
.|.++.. .+|++|+||.+|+++|+++|+||+||.|.+||||.+... ....|++|..+.+.+|++|+||.+|
T Consensus 250 ~p~~~~~-----~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~h 324 (473)
T 3of7_A 250 DPRPFGL-----RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHH 324 (473)
T ss_dssp SCEECSC-----CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECSSE
T ss_pred CceecCC-----cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEEeCCCe
Confidence 5665532 379999999999999999999999999999999998764 3457999998888899999999999
Q ss_pred EEEEEcCCcEEEEEcCCCCCCCCCCCC-----------CCCceecceEcCccCCCCEEEEEecCCeEEEEEcCCCEEEEe
Q 011336 387 TFVLVDTGSVYGFGWMGFGSLGFPDRG-----------VSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFG 455 (488)
Q Consensus 387 t~~lt~~G~vy~wG~n~~gqLG~~~~~-----------~~~~~~~P~~v~~~~~~~v~~v~~G~~ht~~l~~~G~v~~wG 455 (488)
+++|+++|+||+||.|.+||||.+... .......|++++.+. +|++|+||.+|++||+++|+||+||
T Consensus 325 s~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~--~v~~Ia~G~~hs~al~~~G~vy~wG 402 (473)
T 3of7_A 325 SLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKSVAAGSHHSVAVAQNGIAYSWG 402 (473)
T ss_dssp EEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC--CEEEEEECSSEEEEEETTSCEEEEE
T ss_pred EEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCC--ceEEEEeCCCeEEEEeCCCcEEEee
Confidence 999999999999999999999987531 122345677777554 7999999999999999999999999
Q ss_pred CCCCCCCCCCC-CCCcccceEEEcc
Q 011336 456 DNERAQLGHDT-LRGCLEPTEIFIQ 479 (488)
Q Consensus 456 ~n~~GqLG~g~-~~~~~~p~~v~~~ 479 (488)
.|.+||||+++ ..+...|++|...
T Consensus 403 ~n~~GqLG~g~~~~~~~~P~~v~~~ 427 (473)
T 3of7_A 403 FGETYAVGLGPFEDDTEVPTRIKNT 427 (473)
T ss_dssp CCTTCTTCCCSCCSCEEEEEECCCT
T ss_pred CCCCCCCCCCCCCccccCCeEeccc
Confidence 99999999998 7889999998754
No 6
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.2e-68 Score=536.03 Aligned_cols=368 Identities=26% Similarity=0.419 Sum_probs=319.0
Q ss_pred CCchhhhhhhcccCCCcceeeeeeecccccccccc--cCCCceEEEecCceeEee-eCCcEEEEeCCCCCCCCCCCCCce
Q 011336 74 MSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVE--TSAGNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQ 150 (488)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~i~~G~~h~~~l-~~g~vy~wG~n~~GqLG~g~~~~~ 150 (488)
..+...++++.|+....++|..........|..+. ....|++|+||..|+++| ++|+||+||.|.+||||.+....
T Consensus 14 ~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~- 92 (389)
T 3kci_A 14 LYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTES- 92 (389)
T ss_dssp -------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCC-
T ss_pred eeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCC-
Confidence 35667788888988888877643322222333332 334689999999999999 99999999999999999997655
Q ss_pred eeeeeEeeCCCCC--CEEEEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecCCee
Q 011336 151 CVSFTRINFPSAA--HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFT 228 (488)
Q Consensus 151 ~~~p~~~~~~~~~--~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~ 228 (488)
...|++++..... ++++|+||..|+++|+++|+||+||.|.+||||.+.. .....|++++.+.+.+|++|+||..|+
T Consensus 93 ~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~-~~~~~p~~v~~l~~~~i~~va~G~~hs 171 (389)
T 3kci_A 93 VSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNR-SPCDRPRVIESLRGIEVVDVAAGGAHS 171 (389)
T ss_dssp EEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSC-CCEEEEEECGGGTTSCEEEEEECSSEE
T ss_pred ccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCC-ccCcCCeEecccCCCeEEEEEeCcCeE
Confidence 4466666644443 5588999999999999999999999999999999987 567889999999998999999999999
Q ss_pred EEEEeCCcEEEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC--CeEEEEEcCCcEEEecCCCCCccCCCCC
Q 011336 229 GFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQ 306 (488)
Q Consensus 229 ~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~--~~~~~lt~~G~v~~wG~n~~gqlG~~~~ 306 (488)
++|+++|+||+||.|.+||||.++......|.++..+.. .+|++|+||. .|+++|+++|+||+||.|.+||||.+..
T Consensus 172 ~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~-~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~ 250 (389)
T 3kci_A 172 ACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQG-HRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGS 250 (389)
T ss_dssp EEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTT-SCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSC
T ss_pred EEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCC-CeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCC
Confidence 999999999999999999999999988889999987765 6899999995 8999999999999999999999999988
Q ss_pred CCCcCceeeeecccCCeeEEEEEeCCCeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEeeCCe
Q 011336 307 HDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRK 386 (488)
Q Consensus 307 ~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~ 386 (488)
.....|++++.+. +.+|++|+||.+|+++|+++|+||+||.|.+||||.++......|++|..+.+.+|++|+||.+|
T Consensus 251 ~~~~~p~~v~~~~--~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h 328 (389)
T 3kci_A 251 DGCKVPMKIDSLT--GLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLH 328 (389)
T ss_dssp CCEEEEEECGGGT--TSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSE
T ss_pred CCccccEEecccC--CCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCe
Confidence 8888898887663 45799999999999999999999999999999999999988899999999998999999999999
Q ss_pred EEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceEcCccCCCCEEEEEecCCeEEEEEcCC
Q 011336 387 TFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRG 449 (488)
Q Consensus 387 t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~v~~G~~ht~~l~~~G 449 (488)
+++|+++|+||+||.|.+||||.+. ......|++++.+.+.+|++|+||.+|++|+++++
T Consensus 329 ~~al~~~G~v~~wG~n~~GqLG~g~---~~~~~~P~~v~~~~~~~v~~va~G~~ht~al~~~~ 388 (389)
T 3kci_A 329 CVCCTEDGEVYTWGDNDEGQLGDGT---TNAIQRPRLVAALQGKKVNRVACGSAHTLAWSTSK 388 (389)
T ss_dssp EEEEETTCCEEEEECCTTSTTCSSS---CCCEEEEEECGGGTTSCCCEEEEETTEEEEECC--
T ss_pred EEEECCCCCEEEeeCCCCCcCCCCC---CCCccCcEEecccCCCCEEEEEecCCcEEEEecCC
Confidence 9999999999999999999999987 45678899999998889999999999999998764
No 7
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=1.1e-66 Score=528.31 Aligned_cols=369 Identities=24% Similarity=0.338 Sum_probs=313.1
Q ss_pred CCchhhhhhhcccCCCcceeeeeeecc-cccccccccCCCceEEEecCceeEee-eCCcEEEEeCCCCCCCCCCCCCc-e
Q 011336 74 MSRNVQIELLNRCNGNWKRVLRFLQSV-EHSSDIVETSAGNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETT-Q 150 (488)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~i~~G~~h~~~l-~~g~vy~wG~n~~GqLG~g~~~~-~ 150 (488)
+.+...++++.|+....++|....... ...|..+.....|++|+||..|+++| ++|+||+||.|.+||||.+.... .
T Consensus 21 ~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~ 100 (413)
T 1a12_A 21 SHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGS 100 (413)
T ss_dssp TCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTG
T ss_pred eeecCCCcEEEEECCCCCcCCCCCCccccccceEccCCCCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCcc
Confidence 455667888999888887776543222 23456666667899999999999999 99999999999999999987632 2
Q ss_pred eeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCcEEEEeC--CCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecCCee
Q 011336 151 CVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGD--NSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFT 228 (488)
Q Consensus 151 ~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~--n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~ 228 (488)
...|+++.+ ..+|++|+||..|+++|+++|+||+||. |.+||||.+........|.++ +...+|++|+||.+|+
T Consensus 101 ~~~P~~v~l--~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~ia~G~~hs 176 (413)
T 1a12_A 101 EMVPGKVEL--QEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDVPVVKVASGNDHL 176 (413)
T ss_dssp GGSCEECCC--CSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSSCEEEEEECSSEE
T ss_pred ccCCeEecC--CCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe--cCCCCEEEEEecCceE
Confidence 335666654 3489999999999999999999999999 999999998775555668877 4566899999999999
Q ss_pred EEEEeCCcEEEEECCCCCccCCCCCCC-----------CCCceeecCCC----CCCCEEEEEeCCCeEEEEEcCCcEEEe
Q 011336 229 GFLTIRGHVHTCGSNTHGQLGHGDTLD-----------RPTPKSIAPLE----EVGSVVQIAAGPSYMLAVTGNGVVYSF 293 (488)
Q Consensus 229 ~~lt~~G~vy~wG~n~~gqlG~~~~~~-----------~~~p~~i~~~~----~~~~i~~i~~G~~~~~~lt~~G~v~~w 293 (488)
++|+++|+||+||.|.+||||.+.... ...|..+.... ...+|++|+||.+|+++|+++|+||+|
T Consensus 177 ~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~w 256 (413)
T 1a12_A 177 VMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGF 256 (413)
T ss_dssp EEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEE
T ss_pred EEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEE
Confidence 999999999999999999999875422 14565554421 236899999999999999999999999
Q ss_pred cCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCCCeEEEEeCCCcEEEEecCCCCCCCCC-CCCCcccceeecCC
Q 011336 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHG-DEIDKTLPEPLSSL 372 (488)
Q Consensus 294 G~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlG~~-~~~~~~~p~~v~~~ 372 (488)
|.|.+||||.+.......|+++..+.....+|++|+||.+|+++|+++|+||+||.|.+||||.+ +......|++|+.+
T Consensus 257 G~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l 336 (413)
T 1a12_A 257 GLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL 336 (413)
T ss_dssp ECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSS
T ss_pred eCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEeccc
Confidence 99999999999888888899988775434579999999999999999999999999999999999 45667789999887
Q ss_pred CCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceEcCc--cCCCCEEEEEecCCeEEEEEcCCC
Q 011336 373 KSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDS--LRAHHVSQISTGLYHTVVVTDRGR 450 (488)
Q Consensus 373 ~~~~i~~v~~G~~~t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~--~~~~~v~~v~~G~~ht~~l~~~G~ 450 (488)
. +|++|+||.+|+++|+++|+||+||.|.+||||.+.. .....|++++. +.+.+|++|+||.+|+++|+++|+
T Consensus 337 ~--~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~---~~~~~P~~v~~~~~~~~~v~~v~~G~~ht~~l~~~g~ 411 (413)
T 1a12_A 337 P--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQD---EDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKE 411 (413)
T ss_dssp S--SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSC---SCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEECS
T ss_pred C--ceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCCC---CCcccCeEccccccCCCeEEEEeeCCCcEEEEEecCC
Confidence 6 7999999999999999999999999999999999873 56788999974 456789999999999999999986
Q ss_pred E
Q 011336 451 L 451 (488)
Q Consensus 451 v 451 (488)
+
T Consensus 412 ~ 412 (413)
T 1a12_A 412 Q 412 (413)
T ss_dssp C
T ss_pred C
Confidence 3
No 8
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=2.1e-64 Score=513.41 Aligned_cols=363 Identities=22% Similarity=0.292 Sum_probs=307.0
Q ss_pred cCCchhhhhhhcccCCCcceeeeeee-cccccccccccCCCceEEEecCceeEee-eCCcEEEEeCCCCCCCCCCCCCce
Q 011336 73 GMSRNVQIELLNRCNGNWKRVLRFLQ-SVEHSSDIVETSAGNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQ 150 (488)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~G~~h~~~l-~~g~vy~wG~n~~GqLG~g~~~~~ 150 (488)
...+...++++.|+....++|..... .....|..+....+|++|+||..|+++| ++|+||+||.|.+||||.+.....
T Consensus 36 ~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~ 115 (423)
T 3mvd_K 36 PKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDG 115 (423)
T ss_dssp CCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTT
T ss_pred ceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCc
Confidence 45567788899999988888875432 2233466667778899999999999999 999999999999999999876541
Q ss_pred -eeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCcEEEEeC--CCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecCCe
Q 011336 151 -CVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGD--NSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNF 227 (488)
Q Consensus 151 -~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~--n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h 227 (488)
...|.++. ...+|++|+||..|+++|+++|+||+||. |.+||||.+... ....| ++.+...+|++|+||.+|
T Consensus 116 ~~~~P~~v~--~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~-~~~~p--~~~~~~~~i~~va~G~~h 190 (423)
T 3mvd_K 116 SESKPDLID--LPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDG-NKRTP--IDLMEGTVCCSIASGADH 190 (423)
T ss_dssp SSSSCEECC--CSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTB-CEEEE--EESSTTCCEEEEEECSSE
T ss_pred cccCCeEEc--CCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCC-CCcee--eEecCCCcEEEEecCCCe
Confidence 23455554 44589999999999999999999999999 999999998763 33444 444667889999999999
Q ss_pred eEEEEeCCcEEEEECCCCCccCCCCCC-----------CCCCceeecCCCCCCCEEEEEeCCCeEEEE-EcCCcEEEecC
Q 011336 228 TGFLTIRGHVHTCGSNTHGQLGHGDTL-----------DRPTPKSIAPLEEVGSVVQIAAGPSYMLAV-TGNGVVYSFGS 295 (488)
Q Consensus 228 ~~~lt~~G~vy~wG~n~~gqlG~~~~~-----------~~~~p~~i~~~~~~~~i~~i~~G~~~~~~l-t~~G~v~~wG~ 295 (488)
+++|+++|+||+||.|.+||||.+... ....|.++..... .+|++|+||.+|++++ +++|+||+||.
T Consensus 191 s~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~-~~v~~i~~g~~~~~~~~~~~g~v~~wG~ 269 (423)
T 3mvd_K 191 LVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRA-KPFEAIWATNYCTFMRESQTQVIWATGL 269 (423)
T ss_dssp EEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTC-CCEEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred EEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCC-ccEEEEEECCcEEEEEECCCCeEEEEeC
Confidence 999999999999999999999997653 3457888775543 6899999999999999 59999999999
Q ss_pred CCCCccCCCCCCCCc--CceeeeecccCCeeEEEEEeCCCeEEEEeCCCcEEEEecCCCCCCCCCCCCC-cccceeecCC
Q 011336 296 GSNFCLGHGEQHDEL--QPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEID-KTLPEPLSSL 372 (488)
Q Consensus 296 n~~gqlG~~~~~~~~--~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~-~~~p~~v~~~ 372 (488)
|.+||||.+...... .|+++. ..+|++|+||..|+++|+++|+||+||.|.+||||.++... ...|++++.+
T Consensus 270 n~~gqlg~~~~~~~~~~~p~~~~-----~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l 344 (423)
T 3mvd_K 270 NNFKQLAHETKGKEFALTPIKTE-----LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKL 344 (423)
T ss_dssp CTTCTTSSCCTTCSEEEEEEEEC-----CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTC
T ss_pred CCCCcCCCCCCCCceeeeeEEcC-----CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccC
Confidence 999999996554433 455443 23799999999999999999999999999999999998765 4689999888
Q ss_pred CCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceEcCc--cCCCCEEEEEecCCeEEEEEcCCC
Q 011336 373 KSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDS--LRAHHVSQISTGLYHTVVVTDRGR 450 (488)
Q Consensus 373 ~~~~i~~v~~G~~~t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~--~~~~~v~~v~~G~~ht~~l~~~G~ 450 (488)
.. +|++|+||.+|++||+++|+||+||.|.+||||.++ ......|++|.. +.+.+|++|+||.+|+++|+++++
T Consensus 345 ~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~---~~~~~~P~~v~~~~~~~~~v~~va~G~~ht~~l~~~~k 420 (423)
T 3mvd_K 345 TE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGD---GDDELEPIVVVSKNTQGKHMLLASGGGQHAIFLVKADK 420 (423)
T ss_dssp CS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSS---SCCEEEEEECCSTTTTTCCEEEEEECSSEEEEEEECC-
T ss_pred CC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCCC---CCCcccCeEEeCcccCCCEEEEEEECCCcEEEEEcccc
Confidence 77 899999999999999999999999999999999987 455678999985 667889999999999999999874
No 9
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=1.4e-64 Score=511.14 Aligned_cols=320 Identities=33% Similarity=0.510 Sum_probs=297.4
Q ss_pred CCCEEEEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecCCeeEEEEeCC-cEEEE
Q 011336 162 AAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRG-HVHTC 240 (488)
Q Consensus 162 ~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~lt~~G-~vy~w 240 (488)
..+|++|+||..|+++|+++|+||+||.|.+||||.+.. .....|.++..+.+.+|++|+||..|+++|+++| +||+|
T Consensus 15 ~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~-~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~w 93 (406)
T 4d9s_A 15 PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDA-EDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSW 93 (406)
T ss_dssp CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSC-CCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEE
T ss_pred ccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCc-ccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEE
Confidence 348999999999999999999999999999999999987 4568899999888889999999999999999886 99999
Q ss_pred ECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeeccc
Q 011336 241 GSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRR 320 (488)
Q Consensus 241 G~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~ 320 (488)
|.|.+||||.++..+...|.++..+.. .+|++|+||..|+++|+++|+||+||.|.+||||.+.......|.++..+.
T Consensus 94 G~n~~GqLG~g~~~~~~~p~~v~~l~~-~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~- 171 (406)
T 4d9s_A 94 GWGDFGRLGHGNSSDLFTPLPIKALHG-IRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE- 171 (406)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTT-CCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGT-
T ss_pred cCCCCcCCCCCCCCccccceEecccCC-CCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccC-
Confidence 999999999999888888998887754 589999999999999999999999999999999999988888898887663
Q ss_pred CCeeEEEEEeCCCeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEeeCCeEEEEEcCCcEEEEE
Q 011336 321 KGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFG 400 (488)
Q Consensus 321 ~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~t~~lt~~G~vy~wG 400 (488)
+.+|++|+||.+|+++|+++|+||+||.|.+||||.++......|+++..+...+|++|+||.+|+++|+++|+||+||
T Consensus 172 -~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG 250 (406)
T 4d9s_A 172 -GIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYG 250 (406)
T ss_dssp -TCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEE
T ss_pred -CCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEee
Confidence 4589999999999999999999999999999999999998899999999888889999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCceecceEcCccCCCCEEEEEecCCeEEEEEcCCCEEEEeCCCCCCCCCCCCCCcccceEEEccc
Q 011336 401 WMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQE 480 (488)
Q Consensus 401 ~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~v~~G~~ht~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 480 (488)
.|.+||||.++ ......|.+++.+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.++..+...|++|.++.
T Consensus 251 ~n~~GqlG~g~---~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 327 (406)
T 4d9s_A 251 WSKYGQLGHGD---LEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPD 327 (406)
T ss_dssp CCTTSTTCSSS---CCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGG
T ss_pred CCCCCCCCCCC---CcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccC
Confidence 99999999987 456778999999888899999999999999999999999999999999999999999999999887
Q ss_pred cccccCCC
Q 011336 481 MEEDTGLA 488 (488)
Q Consensus 481 ~~~~~~ia 488 (488)
..++.+||
T Consensus 328 ~~~v~~va 335 (406)
T 4d9s_A 328 DQKVVQVS 335 (406)
T ss_dssp GCCEEEEE
T ss_pred CCcEEEEE
Confidence 77666553
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-63 Score=512.14 Aligned_cols=361 Identities=20% Similarity=0.276 Sum_probs=296.1
Q ss_pred hhhhhhhcccCCCcceeeeeeec---cccccccc----ccCCCceEEEecCceeEee-eCCcEEEEeCCCCCCCCCCCCC
Q 011336 77 NVQIELLNRCNGNWKRVLRFLQS---VEHSSDIV----ETSAGNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPET 148 (488)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~i~~i~~G~~h~~~l-~~g~vy~wG~n~~GqLG~g~~~ 148 (488)
...++++.|+...+++|...... ....|..+ ....+|++|+||..|+++| ++|+||+||.|.+||||.+...
T Consensus 26 ~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~ 105 (473)
T 3of7_A 26 VQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSN 105 (473)
T ss_dssp SSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC-
T ss_pred CCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcc
Confidence 34677888988888887654321 11223222 2345799999999999999 9999999999999999998765
Q ss_pred ce----------------------eeeeeEee---CC---CCCCEEEEEeCCceeEEEEcCCcEEEEeC--CCCCcccCC
Q 011336 149 TQ----------------------CVSFTRIN---FP---SAAHVVQVSASENHAAFVLQSGQVFTCGD--NSSFCCGHR 198 (488)
Q Consensus 149 ~~----------------------~~~p~~~~---~~---~~~~i~~i~~G~~~~~~lt~~G~vy~wG~--n~~gqlG~~ 198 (488)
.. ...|++++ ++ ...+|++|+||..|+++|+++|+||+||. |..||||.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~ 185 (473)
T 3of7_A 106 AKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFY 185 (473)
T ss_dssp --------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESB
T ss_pred cccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCC
Confidence 41 22455554 22 24699999999999999999999999998 678999985
Q ss_pred CCC-CceeCCEEeccCCCCCeEEEEecCCeeEEEEeCCcEEEEECCCCCccCCCCCCC----CCCceeecCCCCCCCEEE
Q 011336 199 DTN-RPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLD----RPTPKSIAPLEEVGSVVQ 273 (488)
Q Consensus 199 ~~~-~~~~~p~~v~~~~~~~i~~V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~----~~~p~~i~~~~~~~~i~~ 273 (488)
... .....|.+++.+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.... ...|..+.. .+|++
T Consensus 186 ~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~----~~v~~ 261 (473)
T 3of7_A 186 QDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGL----RHVKY 261 (473)
T ss_dssp TTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSC----CSEEE
T ss_pred CCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecCC----cceEE
Confidence 442 457789999999888999999999999999999999999999999999986543 345666532 58999
Q ss_pred EEeCCCeEEEEEcCCcEEEecCCCCCccCCCCCCC----CcCceeeeecccCCeeEEEEEeCCCeEEEEeCCCcEEEEec
Q 011336 274 IAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHD----ELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGK 349 (488)
Q Consensus 274 i~~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~----~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~ 349 (488)
|+||.+|+++|+++|+||+||.|.+||||.+.... ...|+++..+ .+.+|++|+||..|+++|+++|+||+||.
T Consensus 262 Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~--~~~~i~~ia~G~~hs~~lt~~G~v~~wG~ 339 (473)
T 3of7_A 262 IASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALP--DNVVIRSIAAGEHHSLILSQDGDLYSCGR 339 (473)
T ss_dssp EEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCC--TTCCEEEEEECSSEEEEEETTSCEEEEEE
T ss_pred EecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeecccccccc--CCccEEEEEeCCCeEEEEeCCCeEEEEEC
Confidence 99999999999999999999999999999987642 3467777654 34589999999999999999999999999
Q ss_pred CCCCCCCCCCCC--------------CcccceeecCCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCC
Q 011336 350 GYCGALGHGDEI--------------DKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVS 415 (488)
Q Consensus 350 n~~gqlG~~~~~--------------~~~~p~~v~~~~~~~i~~v~~G~~~t~~lt~~G~vy~wG~n~~gqLG~~~~~~~ 415 (488)
|.+||||.+... ....|++++.+. +|++|+||.+|++||+++|+||+||.|.+||||++.. .
T Consensus 340 n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~--~v~~Ia~G~~hs~al~~~G~vy~wG~n~~GqLG~g~~--~ 415 (473)
T 3of7_A 340 LDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPF--E 415 (473)
T ss_dssp CTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC--CEEEEEECSSEEEEEETTSCEEEEECCTTCTTCCCSC--C
T ss_pred CCCCccCCCccccccccccccCCceeeeccCcccCCCC--ceEEEEeCCCeEEEEeCCCcEEEeeCCCCCCCCCCCC--C
Confidence 999999986531 223566666544 6999999999999999999999999999999999872 4
Q ss_pred CceecceEcCc--cCCCCEEEEEecCCeEEEEEc
Q 011336 416 DKVLRPRILDS--LRAHHVSQISTGLYHTVVVTD 447 (488)
Q Consensus 416 ~~~~~P~~v~~--~~~~~v~~v~~G~~ht~~l~~ 447 (488)
.....|++|+. +.+.+|++|+||.+|++++..
T Consensus 416 ~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~ 449 (473)
T 3of7_A 416 DDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGV 449 (473)
T ss_dssp SCEEEEEECCCTTTTTEEEEEEEECSSEEEEEEE
T ss_pred ccccCCeEecccccCCCeEEEEeeCCCeEEEEEe
Confidence 45778999984 456689999999999999976
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=9.3e-54 Score=409.32 Aligned_cols=257 Identities=22% Similarity=0.256 Sum_probs=216.9
Q ss_pred cccCCCceEEEecCceeEeeeCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCcEEE
Q 011336 107 VETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFT 186 (488)
Q Consensus 107 ~~~~~~i~~i~~G~~h~~~l~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~ 186 (488)
.+...+|++|+||..|+++|++|+||+||.|.+||||... +...+|++|+||..|+++|+ +|+||+
T Consensus 20 ~~~~~~i~~ia~G~~h~~~l~~G~v~~wG~n~~Gqlg~p~-------------~~~~~i~~ia~G~~hs~~l~-~G~v~~ 85 (282)
T 3qhy_B 20 AEAQSGVDAIAGGYFHGLALKGGKVLGWGANLNGQLTMPA-------------ATQSGVDAIAAGNYHSLALK-DGEVIA 85 (282)
T ss_dssp GGGSSSCCEEEECSSEEEEEETTEEEEEECCSSSTTSCCG-------------GGGSCCCEEEECSSEEEEEE-TTEEEE
T ss_pred ccccCCCcEEEeCCCeEEEEECCEEEEEeCCCCCCCCCCc-------------cCCCCEEEEEeCCCEEEEEE-CCEEEE
Confidence 3456689999999999999999999999999999999521 12347999999999999996 999999
Q ss_pred EeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecCCeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCceeecCCC
Q 011336 187 CGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLE 266 (488)
Q Consensus 187 wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~ 266 (488)
||.|.+||||. |.++ ..+|++|+||.+|+++|+ +|+||+||.|.+||||. |.. .
T Consensus 86 wG~n~~Gqlg~---------P~~~----~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~--------~~~--~-- 139 (282)
T 3qhy_B 86 WGGNEDGQTTV---------PAEA----RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTV--------PAE--A-- 139 (282)
T ss_dssp EECCTTSTTCC---------CGGG----SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSC--------CGG--G--
T ss_pred eeCCCCCCCCC---------Cccc----CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCC--------Ccc--C--
Confidence 99999999985 3222 237999999999999999 99999999999999973 221 1
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCCCeEEEEeCCCcEEE
Q 011336 267 EVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYT 346 (488)
Q Consensus 267 ~~~~i~~i~~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~ 346 (488)
..+|++|+||..|+++|+ +|+||+||.|.+||||. |.++ ..+|++|+||.+|+++| ++|+||+
T Consensus 140 -~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~--------p~~~------~~~v~~i~~G~~hs~al-~~G~v~~ 202 (282)
T 3qhy_B 140 -QSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV--------PAEA------QSGVDDVAGGIFHSLAL-KDGKVIA 202 (282)
T ss_dssp -GSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC--------CGGG------GSSEEEEEECSSEEEEE-ETTEEEE
T ss_pred -CCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC--------ceec------CCCeEEEEecCCEEEEE-ECCeEEE
Confidence 157999999999999999 89999999999999983 3222 23799999999999999 8999999
Q ss_pred EecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceEcCc
Q 011336 347 WGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDS 426 (488)
Q Consensus 347 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~ 426 (488)
||.|.+||||... . .+ .+|++|+||.+|+++|+ +|+||+||.|.++|++..
T Consensus 203 wG~n~~gqlg~p~--------~--~~--~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v~---------------- 253 (282)
T 3qhy_B 203 WGDNRYKQTTVPT--------E--AL--SGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQ---------------- 253 (282)
T ss_dssp EECCTTSTTCCCG--------G--GG--SSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGGS----------------
T ss_pred EECCCCCCCCCCc--------c--cC--CCceEEEcCCCEEEEEE-CCEEEEecCCCCccccCC----------------
Confidence 9999999998532 1 11 35899999999999999 999999999999988642
Q ss_pred cCCCCEEEEEecCCeEEEEEcCCCEE
Q 011336 427 LRAHHVSQISTGLYHTVVVTDRGRLF 452 (488)
Q Consensus 427 ~~~~~v~~v~~G~~ht~~l~~~G~v~ 452 (488)
..|++|+||..|+++|+++++.+
T Consensus 254 ---~~v~~iaaG~~h~~al~~~~~~~ 276 (282)
T 3qhy_B 254 ---SGVSSIEAGPNAAYALKGGSGSG 276 (282)
T ss_dssp ---SCEEEEEECSSCEEEEEC-----
T ss_pred ---CCcEEEEECcCeEEEEecCCCCC
Confidence 16999999999999999987654
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=2.1e-52 Score=399.86 Aligned_cols=252 Identities=21% Similarity=0.261 Sum_probs=213.1
Q ss_pred CcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCE
Q 011336 129 SSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPR 208 (488)
Q Consensus 129 g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~ 208 (488)
.+||+||+|...++.. .+.+...+|++|+||..|+++|+ +|+||+||.|.+||||...
T Consensus 2 ~~v~~WG~n~~~~~~~------------~p~~~~~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~--------- 59 (282)
T 3qhy_B 2 TSVVAWGGNNDWGEAT------------VPAEAQSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPA--------- 59 (282)
T ss_dssp CEEEEECSCCTTSTTC------------CCGGGSSSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCG---------
T ss_pred eEEEEeCCCCCcCccc------------CCccccCCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCc---------
Confidence 3699999997555432 12233448999999999999998 9999999999999999521
Q ss_pred EeccCCCCCeEEEEecCCeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCeEEEEEcCC
Q 011336 209 LVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNG 288 (488)
Q Consensus 209 ~v~~~~~~~i~~V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G 288 (488)
. ...+|++|+||.+|+++|+ +|+||+||.|.+||||. |.++. .+|++|+||.+|+++|+ +|
T Consensus 60 ~----~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~--------P~~~~-----~~v~~ia~G~~hs~al~-~G 120 (282)
T 3qhy_B 60 A----TQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV--------PAEAR-----SGVDAIAAGAWASYALK-DG 120 (282)
T ss_dssp G----GGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC--------CGGGS-----SSEEEEEEETTEEEEEE-TT
T ss_pred c----CCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC--------CcccC-----CCeEEEECcCCEEEEEe-CC
Confidence 1 1236899999999999996 99999999999999984 44442 57999999999999999 99
Q ss_pred cEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCCCeEEEEeCCCcEEEEecCCCCCCCCCCCCCccccee
Q 011336 289 VVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEP 368 (488)
Q Consensus 289 ~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~ 368 (488)
+||+||.|.+||||. |.+ ...+|++|+||..|+++|+ +|+||+||.|.+||||. |.+
T Consensus 121 ~v~~wG~n~~gqlg~--------~~~------~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~--------p~~ 177 (282)
T 3qhy_B 121 KVIAWGDDSDGQTTV--------PAE------AQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV--------PAE 177 (282)
T ss_dssp EEEEEECCTTSTTSC--------CGG------GGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC--------CGG
T ss_pred eEEEecCCCCCcCCC--------Ccc------CCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC--------cee
Confidence 999999999999984 111 1237999999999999999 89999999999999983 333
Q ss_pred ecCCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceEcCccCCCCEEEEEecCCeEEEEEcC
Q 011336 369 LSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDR 448 (488)
Q Consensus 369 v~~~~~~~i~~v~~G~~~t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~v~~G~~ht~~l~~~ 448 (488)
+ ..+|++|+||.+|+++| ++|+||+||.|.+||||.+.. . ..+|++|+||.+|+++++ +
T Consensus 178 ~----~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~-------------~--~~~v~~i~~G~~h~~al~-~ 236 (282)
T 3qhy_B 178 A----QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTE-------------A--LSGVSAIASGEWYSLALK-N 236 (282)
T ss_dssp G----GSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGG-------------G--GSSCCEEEECSSCEEEEE-T
T ss_pred c----CCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcc-------------c--CCCceEEEcCCCEEEEEE-C
Confidence 3 34699999999999999 899999999999999996431 1 136999999999999999 9
Q ss_pred CCEEEEeCCCCCCCCCC
Q 011336 449 GRLFGFGDNERAQLGHD 465 (488)
Q Consensus 449 G~v~~wG~n~~GqLG~g 465 (488)
|+||+||.|++||++..
T Consensus 237 g~v~~wG~n~~gq~~v~ 253 (282)
T 3qhy_B 237 GKVIAWGSSRTAPSSVQ 253 (282)
T ss_dssp TEEEEESTTCCCCGGGS
T ss_pred CEEEEecCCCCccccCC
Confidence 99999999999999873
No 13
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.09 E-value=9.5e-07 Score=89.06 Aligned_cols=362 Identities=10% Similarity=0.008 Sum_probs=196.9
Q ss_pred ccccCChHHHHHHHhcCCCCcccccccccccccccCCCCCCCccccChhHHHHHHHhhhccccccCCchhhh-hhhcccC
Q 011336 9 SIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQI-ELLNRCN 87 (488)
Q Consensus 9 ~~~~lp~~i~~~~l~~~~l~~~d~~~L~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~ 87 (488)
.+..||+||+.+||. ||+++||.++..|||.|+..+.. +.+.+..|+.+...++....... .-.....
T Consensus 18 ~~~~lp~e~~~~i~~--~l~~~~l~~~~~v~~~~~~~~~~---------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (445)
T 2ovr_B 18 FISLLPKELALYVLS--FLEPKDLLQAAQTCRYWRILAED---------NLLWREKCKEEGIDEPLHIKRRKVIKPGFIH 86 (445)
T ss_dssp TTTSSCHHHHHHHHT--TSCHHHHHHHTTSCHHHHHHHTC---------SHHHHHHHTTTTCCSCCCCCC--CCSSCCCC
T ss_pred hhHHCCHHHHHHHHH--hCCHHHHHHHHHHhHHHHhhcCc---------hhHhhhheeecccccccccccceecCCCccC
Confidence 357899999999999 99999999999999998865531 22333555544221111000000 0000011
Q ss_pred CCcceeeeeeec-------ccc-cccccccC-CC-ceEEEecCceeEee-eCCcEEEEeCCCCCCCCCCCCCceeeeeeE
Q 011336 88 GNWKRVLRFLQS-------VEH-SSDIVETS-AG-NMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTR 156 (488)
Q Consensus 88 ~~~~~~~~~~~~-------~~~-~~~~~~~~-~~-i~~i~~G~~h~~~l-~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~ 156 (488)
..|+..+..... ... ........ .. +..++.-+...+.- .||.|..|-....- ....
T Consensus 87 ~~wk~~~~~~~~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~------------~~~~ 154 (445)
T 2ovr_B 87 SPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGK------------CLRT 154 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCC------------EEEE
T ss_pred CcHHHHHhhhhhhhhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCc------------EEEE
Confidence 123222111000 000 00111111 11 23344433333333 78899999654211 0111
Q ss_pred eeCCCCCCEEEEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecCCeeEEEEeCCc
Q 011336 157 INFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGH 236 (488)
Q Consensus 157 ~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~lt~~G~ 236 (488)
+. .....|..++......+.-..||.|+.|-...... ...+.. ....|..++......+.-..+|.
T Consensus 155 ~~-~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~------------~~~~~~-h~~~v~~~~~~~~~l~s~s~dg~ 220 (445)
T 2ovr_B 155 LV-GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGEC------------IHTLYG-HTSTVRCMHLHEKRVVSGSRDAT 220 (445)
T ss_dssp CC-CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEE------------EEEECC-CSSCEEEEEEETTEEEEEETTSE
T ss_pred Ec-CCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcE------------EEEECC-CCCcEEEEEecCCEEEEEeCCCE
Confidence 11 12236777776667777778899999996543110 011111 22356777776677777788999
Q ss_pred EEEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeee
Q 011336 237 VHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQ 316 (488)
Q Consensus 237 vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~ 316 (488)
|..|-..... ....+.. ....|..++......+.-..+|.|..|-... ...+.
T Consensus 221 i~~wd~~~~~-----------~~~~~~~--~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~--------------~~~~~ 273 (445)
T 2ovr_B 221 LRVWDIETGQ-----------CLHVLMG--HVAAVRCVQYDGRRVVSGAYDFMVKVWDPET--------------ETCLH 273 (445)
T ss_dssp EEEEESSSCC-----------EEEEEEC--CSSCEEEEEECSSCEEEEETTSCEEEEEGGG--------------TEEEE
T ss_pred EEEEECCCCc-----------EEEEEcC--CcccEEEEEECCCEEEEEcCCCEEEEEECCC--------------CcEeE
Confidence 9999533211 0111111 1246777777777777888899999985422 11222
Q ss_pred ecccCCeeEEEEEeCCCeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEeeCCeEEEEEcCCcE
Q 011336 317 TFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSV 396 (488)
Q Consensus 317 ~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~t~~lt~~G~v 396 (488)
.+......|..++....+.+.-..+|.|..|-...... ...+. .....+..++......+.-..||.|
T Consensus 274 ~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i 341 (445)
T 2ovr_B 274 TLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC-----------IHTLT-GHQSLTSGMELKDNILVSGNADSTV 341 (445)
T ss_dssp EECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCE-----------EEEEC-CCCSCEEEEEEETTEEEEEETTSCE
T ss_pred EecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCE-----------EEEEc-CCcccEEEEEEeCCEEEEEeCCCeE
Confidence 22223346777777666666778899999997543110 01111 1223466677767777777889999
Q ss_pred EEEEcCCCCCCCCCCCCCCCceecceEcCccCCCCEEEEEecCCeEEEEEcCCCEEEEeCCC
Q 011336 397 YGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNE 458 (488)
Q Consensus 397 y~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~v~~G~~ht~~l~~~G~v~~wG~n~ 458 (488)
..|-..... ..............|..++....+.+.-..||.|..|-...
T Consensus 342 ~vwd~~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 342 KIWDIKTGQ------------CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp EEEETTTCC------------EEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred EEEECCCCc------------EEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCC
Confidence 999743210 01111111112346777877777777777899999997654
No 14
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.99 E-value=2.1e-07 Score=93.77 Aligned_cols=376 Identities=12% Similarity=0.053 Sum_probs=195.3
Q ss_pred cccCChH----HHHHHHhcCCCCcccccccccccccccCCCC-CCCccccChhHH----HHHHHhhhc----cccccCCc
Q 011336 10 IEELPSH----LIFEILTSGRLSAVDLAHLELTSKTFGGSHG-LYPQKFRSLVDL----AASQLCALH----SIYAGMSR 76 (488)
Q Consensus 10 ~~~lp~~----i~~~~l~~~~l~~~d~~~L~~t~~~f~~~~~-~~~~~~~~~~~~----~~~~~~~~~----~~y~~~~~ 76 (488)
+..||+| |+.+||. ||+++||.++++|||.|+..+. ...|+.....++ ......... ..+++...
T Consensus 11 ~~~lp~e~~~~~~~~i~~--~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 88 (435)
T 1p22_A 11 ITALPARGLDHIAENILS--YLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPP 88 (435)
T ss_dssp HHHTGGGTCHHHHHHHHT--TCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHSSSGGGGCC-----
T ss_pred HHHCCcchHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCcchhhhhhhhccchhhhhhccCCC
Confidence 4789999 9999999 9999999999999999887653 234543322221 000000000 00000000
Q ss_pred hhh-------hhhhc-------ccCCCcceeeeeeecccccccccccCCCceEEEecCceeEee-eCCcEEEEeCCCCCC
Q 011336 77 NVQ-------IELLN-------RCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLI-SNSSVFSCGSSLCGV 141 (488)
Q Consensus 77 ~~~-------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~G~~h~~~l-~~g~vy~wG~n~~Gq 141 (488)
... ..++. .-..+|..-..... ...........|..++......+.- .||.|..|-... ++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~---~~~~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~-~~ 164 (435)
T 1p22_A 89 DGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQ---RIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNT-LE 164 (435)
T ss_dssp ----CCSHHHHHHHHHHHHHHHHHHHHTTTCCCCCC---CEECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSS-CC
T ss_pred CCCCCchhhHHhhhhhhhcchhHHHhhhccCCccce---EEecccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCC-Ce
Confidence 000 00000 00011111000000 0000011223366666655554444 899999995432 11
Q ss_pred CCCCCCCceeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEE
Q 011336 142 LGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQV 221 (488)
Q Consensus 142 LG~g~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V 221 (488)
....+. .....|..++......+.-..||.|..|-....-. . ..+. .....|..+
T Consensus 165 -----------~~~~~~-~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~---------~---~~~~-~h~~~v~~l 219 (435)
T 1p22_A 165 -----------CKRILT-GHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEM---------L---NTLI-HHCEAVLHL 219 (435)
T ss_dssp -----------EEEEEC-CCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCE---------E---EEEC-CCCSCEEEE
T ss_pred -----------EEEEEc-CCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcE---------E---EEEc-CCCCcEEEE
Confidence 111111 22336888888666667777899999996544110 0 1111 123357777
Q ss_pred EecCCeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCc-eeecCCCCCCCEEEEEeCCCeEEEEEcCCcEEEecCCCCCc
Q 011336 222 TAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTP-KSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFC 300 (488)
Q Consensus 222 ~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p-~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~wG~n~~gq 300 (488)
+......+.-..+|.|..|-..... ...+ ..+.. ....|..++....+.+.-..+|.|..|-....
T Consensus 220 ~~~~~~l~s~s~dg~i~vwd~~~~~---------~~~~~~~~~~--~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~-- 286 (435)
T 1p22_A 220 RFNNGMMVTCSKDRSIAVWDMASPT---------DITLRRVLVG--HRAAVNVVDFDDKYIVSASGDRTIKVWNTSTC-- 286 (435)
T ss_dssp ECCTTEEEEEETTSCEEEEECSSSS---------CCEEEEEECC--CSSCEEEEEEETTEEEEEETTSEEEEEETTTC--
T ss_pred EEcCCEEEEeeCCCcEEEEeCCCCC---------CceeeeEecC--CCCcEEEEEeCCCEEEEEeCCCeEEEEECCcC--
Confidence 7777777777889999999432211 0011 11111 12568888877778888888999999965331
Q ss_pred cCCCCCCCCcCceeeeecccCCeeEEEEEeCCCeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEE
Q 011336 301 LGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQV 380 (488)
Q Consensus 301 lG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v 380 (488)
..+..+......|..++......+.-..+|.|..|-..... ....+. .....|..+
T Consensus 287 ------------~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~-----------~~~~~~-~h~~~v~~~ 342 (435)
T 1p22_A 287 ------------EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA-----------CLRVLE-GHEELVRCI 342 (435)
T ss_dssp ------------CEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCC-----------EEEEEC-CCSSCEEEE
T ss_pred ------------cEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCC-----------EEEEEe-CCcCcEEEE
Confidence 11222222233566666666666777889999999754311 011111 123357777
Q ss_pred EeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceEcCccCCCCEEEEEecCCeEEEEEcCCCEEEEeCCCC
Q 011336 381 CARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNER 459 (488)
Q Consensus 381 ~~G~~~t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~v~~G~~ht~~l~~~G~v~~wG~n~~ 459 (488)
+....+.+.-..||.|..|-........... .. .....+. -....|..++....+.+.-..||.|..|-....
T Consensus 343 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~----~~-~~~~~~~-~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 343 RFDNKRIVSGAYDGKIKVWDLVAALDPRAPA----GT-LCLRTLV-EHSGRVFRLQFDEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp ECCSSEEEEEETTSCEEEEEHHHHTSTTSCT----TT-TEEEEEC-CCSSCCCCEEECSSCEEECCSSSEEEEEC----
T ss_pred EecCCEEEEEeCCCcEEEEECCCCCCccccc----cc-hheeecc-CCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCC
Confidence 7766666667789999999743211100000 00 0011111 112356666665566666667899999976553
No 15
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.85 E-value=2.7e-05 Score=78.57 Aligned_cols=371 Identities=9% Similarity=0.044 Sum_probs=184.8
Q ss_pred ccccCChHHHHHHHhcCCCCcccccccccccccccCCCCC--CCccccChhHH------HHHHHhhhccccccCCchh--
Q 011336 9 SIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGL--YPQKFRSLVDL------AASQLCALHSIYAGMSRNV-- 78 (488)
Q Consensus 9 ~~~~lp~~i~~~~l~~~~l~~~d~~~L~~t~~~f~~~~~~--~~~~~~~~~~~------~~~~~~~~~~~y~~~~~~~-- 78 (488)
.+..||+||+.+||. ||+++||++++.|||.+++++.. ..|+...+.+. ......+....|.......
T Consensus 14 ~~~~lp~~~~~~i~~--~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (464)
T 3v7d_B 14 LITSLPFEISLKIFN--YLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKLSQQDRL 91 (464)
T ss_dssp HHHHSCHHHHHHHHT--TSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTTSCCTTTHHHHHHHHHHHCTTSCHHHHH
T ss_pred ChHHCCHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccccchhhhhhhhhccCCCcccchhh
Confidence 357899999999999 99999999999999998876643 33443222111 0000000000010000000
Q ss_pred -------hhhhhcccCCCcceeeeeeecccccccccccCCC-ceEEEecCceeEee-eCCcEEEEeCCCCCCCCCCCCCc
Q 011336 79 -------QIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAG-NMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETT 149 (488)
Q Consensus 79 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~G~~h~~~l-~~g~vy~wG~n~~GqLG~g~~~~ 149 (488)
...+..|....+..... .+..-... +..++......+.- .||.|..|-.... .
T Consensus 92 ~~~~~~~~~~~~~w~~~~~~~~~~---------~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~---------~ 153 (464)
T 3v7d_B 92 RLSFLENIFILKNWYNPKFVPQRT---------TLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINK---------K 153 (464)
T ss_dssp HHHHHHHHHHHHHHHCTTCCCEEE---------EEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTT---------E
T ss_pred HHHHHHhhhhHhhhcCCCcCcceE---------EEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCC---------c
Confidence 00011232222211111 11111112 23444444433333 8899999964321 0
Q ss_pred eeeeeeEeeCCCCCCEEEEEeCCc-eeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEec----
Q 011336 150 QCVSFTRINFPSAAHVVQVSASEN-HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG---- 224 (488)
Q Consensus 150 ~~~~p~~~~~~~~~~i~~i~~G~~-~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G---- 224 (488)
....+. .....|..++.... ..+.-..||.|..|-...... ...+.. ....|..++.-
T Consensus 154 ---~~~~~~-~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~------------~~~~~~-h~~~v~~l~~~~~~~ 216 (464)
T 3v7d_B 154 ---FLLQLS-GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCC------------THVFEG-HNSTVRCLDIVEYKN 216 (464)
T ss_dssp ---EEEEEC-CCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEE------------EEEECC-CSSCEEEEEEEESSS
T ss_pred ---EEEEEe-CCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcE------------EEEECC-CCCccEEEEEecCCC
Confidence 111111 22336777775533 455556789999996543110 111111 12345555432
Q ss_pred CCeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCce----------eecCC-CCCCCEEEEEeCCCeEEEEEcCCcEEEe
Q 011336 225 LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPK----------SIAPL-EEVGSVVQIAAGPSYMLAVTGNGVVYSF 293 (488)
Q Consensus 225 ~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~----------~i~~~-~~~~~i~~i~~G~~~~~~lt~~G~v~~w 293 (488)
....+.-+.+|.|..|-............ ....+. .+..+ .....|..++......+.-..+|.|..|
T Consensus 217 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vw 295 (464)
T 3v7d_B 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGE-EHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVW 295 (464)
T ss_dssp CEEEEEEETTSCEEEEECCCCCCC-------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred CCEEEEEcCCCcEEEeeCCCCcccccccc-cCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEE
Confidence 24455567789999996543322111000 000010 01111 1124677777777778888889999999
Q ss_pred cCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCC--CeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecC
Q 011336 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD--EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSS 371 (488)
Q Consensus 294 G~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~--~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~ 371 (488)
-.... ..+..+......|..++... ...+.-..||.|+.|-... ++ ....+.
T Consensus 296 d~~~~--------------~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~----------~~~~~~- 349 (464)
T 3v7d_B 296 DVAQM--------------KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-GE----------LMYTLQ- 349 (464)
T ss_dssp ETTTT--------------EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TE----------EEEEEC-
T ss_pred ECCCC--------------cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-Cc----------EEEEEe-
Confidence 65321 11222222223455555433 3455567889999986532 10 011111
Q ss_pred CCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceEcCccCCCCEEEEEecCCeEEEEEcCCCE
Q 011336 372 LKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRL 451 (488)
Q Consensus 372 ~~~~~i~~v~~G~~~t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~v~~G~~ht~~l~~~G~v 451 (488)
.....|..++....+.+.-..||.|..|-..... ............+..+..... .++...+|.|
T Consensus 350 ~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~--------------~~~~~~~~~~~~~~~~~~~~~-~l~~~~dg~i 414 (464)
T 3v7d_B 350 GHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS--------------RKFSYHHTNLSAITTFYVSDN-ILVSGSENQF 414 (464)
T ss_dssp CCSSCEEEEEECSSEEEEEETTSEEEEEETTTCC--------------EEEEEECTTCCCEEEEEECSS-EEEEEETTEE
T ss_pred CCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCc--------------eeeeecCCCCccEEEEEeCCC-EEEEecCCeE
Confidence 1233577777777777777899999999754311 111111112234555555444 4444558899
Q ss_pred EEEeCCC
Q 011336 452 FGFGDNE 458 (488)
Q Consensus 452 ~~wG~n~ 458 (488)
..|=...
T Consensus 415 ~iwd~~~ 421 (464)
T 3v7d_B 415 NIYNLRS 421 (464)
T ss_dssp EEEETTT
T ss_pred EEEECCC
Confidence 9996554
No 16
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=97.60 E-value=1.5e-05 Score=54.27 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=32.6
Q ss_pred ccccccCChHHHHHHHhcCCCCcccccccccccccccCCC
Q 011336 7 LFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSH 46 (488)
Q Consensus 7 ~~~~~~lp~~i~~~~l~~~~l~~~d~~~L~~t~~~f~~~~ 46 (488)
...+.+||+||+.+||. +|+++|+.+++.|||.|+..+
T Consensus 6 ~~~~~~LP~eil~~I~~--~L~~~dl~~~~~Vck~w~~~~ 43 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFS--CLCLPELLKVSGVCKRWYRLA 43 (53)
T ss_dssp ---CCSSCHHHHHHHHT--TSCGGGHHHHHTTCHHHHHHH
T ss_pred CCCHHHCCHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHh
Confidence 34678999999999999 999999999999999988654
No 17
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.88 E-value=9.1e-05 Score=68.64 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=33.1
Q ss_pred ccccCChHHHHHHHhcCCCCcccccccccccccccCCC
Q 011336 9 SIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSH 46 (488)
Q Consensus 9 ~~~~lp~~i~~~~l~~~~l~~~d~~~L~~t~~~f~~~~ 46 (488)
++++||+||+++||. ||+|+||..|+.|||+++..+
T Consensus 4 ~l~~LP~ei~l~Ils--fL~p~DL~~l~~vcr~Wr~la 39 (312)
T 3l2o_B 4 TLTRLPIDVQLYILS--FLSPHDLCQLGSTNHYWNETV 39 (312)
T ss_dssp HHHHSCHHHHHHHHH--TSCHHHHHHHHTTCHHHHHHH
T ss_pred hhHhCCHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHh
Confidence 678999999999999 999999999999999977554
No 18
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.25 E-value=0.0085 Score=53.39 Aligned_cols=70 Identities=26% Similarity=0.301 Sum_probs=59.8
Q ss_pred CEEEEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecCCeeEEEEeCCcEEEEECC
Q 011336 164 HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSN 243 (488)
Q Consensus 164 ~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~lt~~G~vy~wG~n 243 (488)
.|.+|+....|+.++--|++|+.+|+++.||+-..... .++.++.+|..+++-+..-..+-.||..
T Consensus 310 ~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~ta--------------gPfla~~AG~~fTVTVn~~nyv~FWGDS 375 (400)
T 4gbf_A 310 PIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHA--------------GPYIQLAAGHNFTVTVNTLNQVMFWGDS 375 (400)
T ss_dssp CCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGG--------------CCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred ccccccccccceEEEecCceeEEeccCCCCceecCCCc--------------chHHhHhccCCeEEEEeceeeEEEecCC
Confidence 68889999999999999999999999999999776542 2578999999999999999999999985
Q ss_pred CCCc
Q 011336 244 THGQ 247 (488)
Q Consensus 244 ~~gq 247 (488)
....
T Consensus 376 PDNS 379 (400)
T 4gbf_A 376 PDNS 379 (400)
T ss_dssp TTST
T ss_pred CCcc
Confidence 4443
No 19
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.01 E-value=0.014 Score=52.11 Aligned_cols=71 Identities=15% Similarity=0.101 Sum_probs=59.8
Q ss_pred CCceEEEecCceeEee-eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCcEEEEeC
Q 011336 111 AGNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGD 189 (488)
Q Consensus 111 ~~i~~i~~G~~h~~~l-~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~ 189 (488)
..|.+|+.-..|..++ -++++|.||++++||+-...... +..++.+|..+++-+..-..+-.||.
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~tag--------------Pfla~~AG~~fTVTVn~~nyv~FWGD 374 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHAG--------------PYIQLAAGHNFTVTVNTLNQVMFWGD 374 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGGC--------------CEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCCcc--------------hHHhHhccCCeEEEEeceeeEEEecC
Confidence 5677888888999999 99999999999999987755443 68899999999999999999999997
Q ss_pred CCCCcc
Q 011336 190 NSSFCC 195 (488)
Q Consensus 190 n~~gql 195 (488)
.....|
T Consensus 375 SPDNSL 380 (400)
T 4gbf_A 375 SPDNSL 380 (400)
T ss_dssp CTTSTT
T ss_pred CCCcce
Confidence 664443
No 20
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=95.72 E-value=0.0033 Score=58.84 Aligned_cols=51 Identities=20% Similarity=0.232 Sum_probs=41.6
Q ss_pred ccccccCChHHHHHHHhcCCCCccccc-ccccccccccCCCCCCCccccChhHHHHHHHhhhc
Q 011336 7 LFSIEELPSHLIFEILTSGRLSAVDLA-HLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALH 68 (488)
Q Consensus 7 ~~~~~~lp~~i~~~~l~~~~l~~~d~~-~L~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (488)
...+.+||+|||..||. +|+++||+ ...+|||.++.+++ ...+.+..|..+
T Consensus 48 ~~~~~~LP~ell~~Il~--~Lp~~~L~~r~~~VCk~Wr~l~~---------~~~~w~~~~~~~ 99 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLA--ELPATELVQACRLVCLRWKELVD---------GAPLWLLKCQQE 99 (297)
T ss_dssp CCCTTSSCHHHHHHHHH--TSCHHHHHHTGGGTCHHHHHHHT---------SHHHHHHHHHHT
T ss_pred ccChhhCCHHHHHHHHH--cCCHHHHHHHHHHHhHHHHHHhc---------ChHHHHHHhhcc
Confidence 35778999999999999 99999999 99999998775543 334556777777
No 21
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.69 E-value=1.8 Score=42.47 Aligned_cols=229 Identities=11% Similarity=0.040 Sum_probs=136.8
Q ss_pred CEEEEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecCCeeEEEEeCCcEEEEECC
Q 011336 164 HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSN 243 (488)
Q Consensus 164 ~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~lt~~G~vy~wG~n 243 (488)
.|..++..+...+.-..||.|..|-....- . ...+.. ....|..++......+.-..||.|..|-..
T Consensus 135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~---------~---~~~~~~-h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRDNTIKIWDKNTLE---------C---KRILTG-HTGSVLCLQYDERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESSSCC---------E---EEEECC-CSSCEEEEECCSSEEEEEETTSCEEEEESS
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEeCCCCe---------E---EEEEcC-CCCcEEEEEECCCEEEEEcCCCeEEEEECC
Confidence 577777777777777889999999644310 0 011111 233577777756666666789999999543
Q ss_pred CCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCe
Q 011336 244 THGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGI 323 (488)
Q Consensus 244 ~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~ 323 (488)
.. + ....+.. ....|..++......+.-..+|.|..|-..... .......+.....
T Consensus 202 ~~-~----------~~~~~~~--h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~-----------~~~~~~~~~~~~~ 257 (435)
T 1p22_A 202 TG-E----------MLNTLIH--HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT-----------DITLRRVLVGHRA 257 (435)
T ss_dssp SC-C----------EEEEECC--CCSCEEEEECCTTEEEEEETTSCEEEEECSSSS-----------CCEEEEEECCCSS
T ss_pred CC-c----------EEEEEcC--CCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCC-----------CceeeeEecCCCC
Confidence 21 1 0111111 125688888888888888899999999643211 1111111222233
Q ss_pred eEEEEEeCCCeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCC
Q 011336 324 HVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMG 403 (488)
Q Consensus 324 ~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~t~~lt~~G~vy~wG~n~ 403 (488)
.|..++....+.+.-..+|.|..|-..... ....+. .....|..++......+.-..||.|..|-...
T Consensus 258 ~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~~-~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~ 325 (435)
T 1p22_A 258 AVNVVDFDDKYIVSASGDRTIKVWNTSTCE-----------FVRTLN-GHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC 325 (435)
T ss_dssp CEEEEEEETTEEEEEETTSEEEEEETTTCC-----------EEEEEE-CCSSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred cEEEEEeCCCEEEEEeCCCeEEEEECCcCc-----------EEEEEc-CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 577777766677777889999999653211 011111 12335777777777777778899999997432
Q ss_pred CCCCCCCCCCCCCceecceEcCccCCCCEEEEEecCCeEEEEEcCCCEEEEeC
Q 011336 404 FGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGD 456 (488)
Q Consensus 404 ~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~v~~G~~ht~~l~~~G~v~~wG~ 456 (488)
.. ....+. .....|..++....+.+.-..||.|..|-.
T Consensus 326 ~~--------------~~~~~~-~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 326 GA--------------CLRVLE-GHEELVRCIRFDNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp CC--------------EEEEEC-CCSSCEEEEECCSSEEEEEETTSCEEEEEH
T ss_pred CC--------------EEEEEe-CCcCcEEEEEecCCEEEEEeCCCcEEEEEC
Confidence 10 011111 123457777776667677778999998854
No 22
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.81 E-value=2.8 Score=44.35 Aligned_cols=150 Identities=10% Similarity=0.008 Sum_probs=71.3
Q ss_pred CCeeEEEEe-CCcEEEEECCCCCc--cCCCCC--CCCCCceeecCCCCCCCEEEEEeCCCeEEEEEcCCcEEEecCCCCC
Q 011336 225 LNFTGFLTI-RGHVHTCGSNTHGQ--LGHGDT--LDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNF 299 (488)
Q Consensus 225 ~~h~~~lt~-~G~vy~wG~n~~gq--lG~~~~--~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~wG~n~~g 299 (488)
..|+++... +|+||.+|...... +..-.. ....+...+..++ ..-..|++++..+|+||++|-....
T Consensus 441 ~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p--------~~R~~h~~~~~~~~~iyv~GG~~~~ 512 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLS--------HTRFRHSACSLPDGNVLILGGVTEG 512 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCS--------BCCBSCEEEECTTSCEEEECCBCSS
T ss_pred cceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCC--------CCcccceEEEEcCCEEEEECCCCCC
Confidence 468877776 89999998532211 100000 0001112222221 1235677777668999999853221
Q ss_pred ccCCCCCCCCcCceeeeecccCCeeEEEEEe-------CCCeE-EEEeCC-CcEEEEecCCCCCCCCCCCCCcccceeec
Q 011336 300 CLGHGEQHDELQPRAIQTFRRKGIHVVRVSA-------GDEHV-VALDSS-GYVYTWGKGYCGALGHGDEIDKTLPEPLS 370 (488)
Q Consensus 300 qlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~-------g~~h~-~~lt~~-G~vy~wG~n~~gqlG~~~~~~~~~p~~v~ 370 (488)
. .+..+.........+.. -..|+ +++..+ ++||.+|-.... +...... ..+-
T Consensus 513 ~-------------~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~--~~~~~~~----v~~y 573 (695)
T 2zwa_A 513 P-------------AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMD--QTTVSDK----AIIF 573 (695)
T ss_dssp C-------------SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTT--SSCBCCE----EEEE
T ss_pred C-------------CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCC--CCeeeCc----EEEE
Confidence 1 12222222223333332 24566 455655 899999832111 0000000 0000
Q ss_pred CCCCCc------EEEEE-----eeCCeEEEEEcCCcEEEEEc
Q 011336 371 SLKSHL------AVQVC-----ARKRKTFVLVDTGSVYGFGW 401 (488)
Q Consensus 371 ~~~~~~------i~~v~-----~G~~~t~~lt~~G~vy~wG~ 401 (488)
.+.... ...+. .-..|++++..+++||++|-
T Consensus 574 d~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG 615 (695)
T 2zwa_A 574 KYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGG 615 (695)
T ss_dssp EECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECC
T ss_pred EccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECC
Confidence 111111 22332 23578888887799999994
No 23
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=94.08 E-value=6.6 Score=40.98 Aligned_cols=72 Identities=18% Similarity=0.128 Sum_probs=37.0
Q ss_pred CeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEE----eeCCeEEE-EEcCCcEEEEEcCCCCC
Q 011336 333 EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVC----ARKRKTFV-LVDTGSVYGFGWMGFGS 406 (488)
Q Consensus 333 ~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~----~G~~~t~~-lt~~G~vy~wG~n~~gq 406 (488)
.|++++..+|+||..|-...++. .........+.... +...+...+. .-.+|+.+ +..+|+||+.|.+.++.
T Consensus 458 ~~~~~~l~~g~i~v~GG~~~~~~-~~~~~~~~~v~~yd-p~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~~ 534 (656)
T 1k3i_A 458 FHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPEIYV-PEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGD 534 (656)
T ss_dssp SCEEEECTTSCEEEECCBSBCCT-TCCCSBCCCCEEEE-GGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTT
T ss_pred cCCeEECCCCCEEEECCcccCcC-cCCCCcccceEEEc-CCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCCC
Confidence 57777778999999985333321 11111111111111 1111122111 12567644 55799999999876553
No 24
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=93.82 E-value=6.1 Score=41.27 Aligned_cols=73 Identities=25% Similarity=0.325 Sum_probs=37.8
Q ss_pred CCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceEcCccCCCCEEEEE----ecCCeEEE-EEcCCCEEEEeCCC
Q 011336 384 KRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQIS----TGLYHTVV-VTDRGRLFGFGDNE 458 (488)
Q Consensus 384 ~~~t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~v~----~G~~ht~~-l~~~G~v~~wG~n~ 458 (488)
..|++++..+|+||+.|-...+.. ... ......+.... +.......+. .-.+|+++ +..||+||..|-+.
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~~-~~~---~~~~~~v~~yd-p~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~ 531 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGIP-FED---STPVFTPEIYV-PEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGL 531 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCCT-TCC---CSBCCCCEEEE-GGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCC
T ss_pred ccCCeEECCCCCEEEECCcccCcC-cCC---CCcccceEEEc-CCCCceeecCCCCCccccccHhhcCCCcEEEecCCCC
Confidence 467777778999999996443321 111 01111111111 0111222221 12467654 56899999999876
Q ss_pred CCC
Q 011336 459 RAQ 461 (488)
Q Consensus 459 ~Gq 461 (488)
++.
T Consensus 532 ~~~ 534 (656)
T 1k3i_A 532 CGD 534 (656)
T ss_dssp CTT
T ss_pred CCC
Confidence 653
No 25
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=92.99 E-value=7.2 Score=38.02 Aligned_cols=227 Identities=8% Similarity=-0.001 Sum_probs=131.2
Q ss_pred CceEEEecCceeEee-eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCcEEEEeCC
Q 011336 112 GNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDN 190 (488)
Q Consensus 112 ~i~~i~~G~~h~~~l-~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n 190 (488)
.|..++.-....+.- .||.|+.|-.... . ....+. .....|..++......+.-..||.|+.|-..
T Consensus 161 ~v~~~~~~~~~l~s~~~dg~i~vwd~~~~---------~---~~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~ 227 (445)
T 2ovr_B 161 GVWSSQMRDNIIISGSTDRTLKVWNAETG---------E---CIHTLY-GHTSTVRCMHLHEKRVVSGSRDATLRVWDIE 227 (445)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTT---------E---EEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEESS
T ss_pred CEEEEEecCCEEEEEeCCCeEEEEECCcC---------c---EEEEEC-CCCCcEEEEEecCCEEEEEeCCCEEEEEECC
Confidence 355555544433333 7889999854321 1 111111 2233677777777777788889999999654
Q ss_pred CCCcccCCCCCCceeCCEEeccCCCCCeEEEEecCCeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCceeecCCCCCCC
Q 011336 191 SSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGS 270 (488)
Q Consensus 191 ~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~ 270 (488)
.... . ..+. .....|..++......+.-..+|.|..|-..... ....+.. ....
T Consensus 228 ~~~~---------~---~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~--~~~~ 281 (445)
T 2ovr_B 228 TGQC---------L---HVLM-GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET-----------CLHTLQG--HTNR 281 (445)
T ss_dssp SCCE---------E---EEEE-CCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTE-----------EEEEECC--CSSC
T ss_pred CCcE---------E---EEEc-CCcccEEEEEECCCEEEEEcCCCEEEEEECCCCc-----------EeEEecC--CCCc
Confidence 3110 0 0111 1233566776666666777789999999432110 0111111 1256
Q ss_pred EEEEEeCCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCCCeEEEEeCCCcEEEEecC
Q 011336 271 VVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKG 350 (488)
Q Consensus 271 i~~i~~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n 350 (488)
|..++....+.+.-..+|.|..|-..... .+..+......+..++......+.-..+|.|..|-..
T Consensus 282 v~~~~~~~~~l~~~~~d~~i~i~d~~~~~--------------~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~ 347 (445)
T 2ovr_B 282 VYSLQFDGIHVVSGSLDTSIRVWDVETGN--------------CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIK 347 (445)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEETTTCC--------------EEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred eEEEEECCCEEEEEeCCCeEEEEECCCCC--------------EEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECC
Confidence 88888877788888889999999653311 1112222223456666666666667889999999753
Q ss_pred CCCCCCCCCCCCcccceeecC--CCCCcEEEEEeeCCeEEEEEcCCcEEEEEcC
Q 011336 351 YCGALGHGDEIDKTLPEPLSS--LKSHLAVQVCARKRKTFVLVDTGSVYGFGWM 402 (488)
Q Consensus 351 ~~gqlG~~~~~~~~~p~~v~~--~~~~~i~~v~~G~~~t~~lt~~G~vy~wG~n 402 (488)
... ....+.. .....|..++....+.+.-..||.|..|-..
T Consensus 348 ~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 348 TGQ-----------CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp TCC-----------EEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred CCc-----------EEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECC
Confidence 211 0111111 1233577777777777777789999999743
No 26
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=92.50 E-value=6.4 Score=36.16 Aligned_cols=274 Identities=8% Similarity=-0.039 Sum_probs=133.7
Q ss_pred ecCceeEee-eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeCC-ceeEEEEcCCcEEEEeCCCCCcc
Q 011336 118 TGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE-NHAAFVLQSGQVFTCGDNSSFCC 195 (488)
Q Consensus 118 ~G~~h~~~l-~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G~-~~~~~lt~~G~vy~wG~n~~gql 195 (488)
.+.-..+++ .||++++++......+....... . .+ .........|..++... ...++...+|.|..|-.......
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~-~-~~-~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~ 85 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRH-A-RQ-INTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNK 85 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCCSE-E-EE-EEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCC
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccCCc-c-cc-ceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCce
Confidence 344556677 89999988876554433322222 1 11 11123334566666543 23344445888999966542110
Q ss_pred cCCCCCCceeCCEEecc-CCCCCeEEEEec--CCeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCceeecCC-CCCCCE
Q 011336 196 GHRDTNRPIFRPRLVEA-LKGVPCKQVTAG--LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPL-EEVGSV 271 (488)
Q Consensus 196 G~~~~~~~~~~p~~v~~-~~~~~i~~V~~G--~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~-~~~~~i 271 (488)
.....+.. .....|..++.. ....++-..+|.|+.|-.... .+.....+ .....|
T Consensus 86 ---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~------------~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 86 ---------SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP------------TPRIKAELTSSAPAC 144 (337)
T ss_dssp ---------SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--------------EEEEEEECSSSCE
T ss_pred ---------eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC------------CcceeeecccCCCce
Confidence 01111110 122345555543 233444567889999843211 11111111 111456
Q ss_pred EEEEeC--CCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCC--CeEEEEeCCCcEEEE
Q 011336 272 VQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD--EHVVALDSSGYVYTW 347 (488)
Q Consensus 272 ~~i~~G--~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~--~h~~~lt~~G~vy~w 347 (488)
..++.. ..+.+.-..+|.|+.|-.... ..+..+......|..++... ...+....+|.|+.|
T Consensus 145 ~~~~~~~~~~~l~~~~~dg~v~~~d~~~~--------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~ 210 (337)
T 1gxr_A 145 YALAISPDSKVCFSCCSDGNIAVWDLHNQ--------------TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210 (337)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTT--------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCC--------------ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEE
Confidence 666654 345566677899999864321 11222222233566665543 344455788999999
Q ss_pred ecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEee--CCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceEcC
Q 011336 348 GKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR--KRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILD 425 (488)
Q Consensus 348 G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G--~~~t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~ 425 (488)
-..... ....+. ....+..++.. ....++-..+|.|+.|-..... ...+.
T Consensus 211 d~~~~~-----------~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~---------------~~~~~ 262 (337)
T 1gxr_A 211 DLREGR-----------QLQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD---------------KYQLH 262 (337)
T ss_dssp ETTTTE-----------EEEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC---------------EEEEC
T ss_pred ECCCCc-----------eEeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC---------------eEEEc
Confidence 653211 001111 12234444432 3344445567888888643210 11111
Q ss_pred ccCCCCEEEEEec--CCeEEEEEcCCCEEEEeCCC
Q 011336 426 SLRAHHVSQISTG--LYHTVVVTDRGRLFGFGDNE 458 (488)
Q Consensus 426 ~~~~~~v~~v~~G--~~ht~~l~~~G~v~~wG~n~ 458 (488)
. ....|..++.. ....+....+|.|..|-...
T Consensus 263 ~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 263 L-HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp C-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred C-CccceeEEEECCCCCEEEEecCCCcEEEEECCC
Confidence 1 12356666655 34455556788888887654
No 27
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.33 E-value=2 Score=45.52 Aligned_cols=18 Identities=6% Similarity=-0.044 Sum_probs=14.7
Q ss_pred CCeEEEEEcCCcEEEecC
Q 011336 278 PSYMLAVTGNGVVYSFGS 295 (488)
Q Consensus 278 ~~~~~~lt~~G~v~~wG~ 295 (488)
..|++++..+++||++|-
T Consensus 598 ~~~~~~~~~~~~iyv~GG 615 (695)
T 2zwa_A 598 YGSQIKYITPRKLLIVGG 615 (695)
T ss_dssp BSCEEEEEETTEEEEECC
T ss_pred ccceEEEeCCCEEEEECC
Confidence 467888877799999985
No 28
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=90.92 E-value=0.064 Score=51.14 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=33.2
Q ss_pred cccccCChHHHHHHHhcCCCCcccccccccccccccCCC
Q 011336 8 FSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSH 46 (488)
Q Consensus 8 ~~~~~lp~~i~~~~l~~~~l~~~d~~~L~~t~~~f~~~~ 46 (488)
..+.+||+||+.+||. ||+.+|+++++.|||.++...
T Consensus 7 ~~~~~LP~eil~~If~--~L~~~d~~~~~~vc~~W~~~~ 43 (336)
T 2ast_B 7 VSWDSLPDELLLGIFS--CLCLPELLKVSGVCKRWYRLA 43 (336)
T ss_dssp CCSSSSCHHHHHHHHT--TSCHHHHHHTTSSCHHHHHHH
T ss_pred CChhhCCHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHh
Confidence 4679999999999999 999999999999999877543
No 29
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=90.78 E-value=9.8 Score=34.91 Aligned_cols=232 Identities=14% Similarity=0.107 Sum_probs=126.6
Q ss_pred eeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEec--CCeeEEEEeCCcEEEEECCCCCccCCC
Q 011336 174 HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHTCGSNTHGQLGHG 251 (488)
Q Consensus 174 ~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G--~~h~~~lt~~G~vy~wG~n~~gqlG~~ 251 (488)
-+++|+++|-|-.-- |+.. ++..+..+... ..+.+++|++|++|.--....- .+
T Consensus 3 vtvils~~Gwir~~~-------g~~~--------------~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp---~~ 58 (276)
T 3no0_A 3 ITVAVLQDGSIIPVE-------ELPL--------------EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQAL---QG 58 (276)
T ss_dssp EEEEEETTSEEEEGG-------GCCS--------------SCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHH---TS
T ss_pred EEEEEcCCceeeecc-------CCCC--------------CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCc---cC
Confidence 467889998666431 2111 23345555433 3457889999999976321110 00
Q ss_pred CCCCCCCceeecCCCCCCCEEEEEeC---CCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEE
Q 011336 252 DTLDRPTPKSIAPLEEVGSVVQIAAG---PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRV 328 (488)
Q Consensus 252 ~~~~~~~p~~i~~~~~~~~i~~i~~G---~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i 328 (488)
... .+ +.+.++|+.+.+- ....+++|++|.+.-.-..++-+- ........+. .+..++.+
T Consensus 59 ~~~------~l--l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~--------~~G~~~i~lk-egD~l~~~ 121 (276)
T 3no0_A 59 SKV------SL--KSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYK--------AQGMPIIKLT-EGDEVVSI 121 (276)
T ss_dssp EEC------CC--SSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTC--------STTEECSCCC-TTCCEEEE
T ss_pred ccc------cc--CCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhh--------cCCeEEEecC-CCCEEEEE
Confidence 000 03 4445789888772 257889999998887754443210 1111111222 12244444
Q ss_pred Ee--CCCeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEee--CCeEEEEEcCCcEEEEEcCCC
Q 011336 329 SA--GDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR--KRKTFVLVDTGSVYGFGWMGF 404 (488)
Q Consensus 329 ~~--g~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G--~~~t~~lt~~G~vy~wG~n~~ 404 (488)
.. +..+.+++|++|++|.+-..+.-.+|....-.. .+...++.+|+.+... ..+.+++|++|.+.-.--.++
T Consensus 122 ~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~----~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~ 197 (276)
T 3no0_A 122 ASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ----GIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEI 197 (276)
T ss_dssp EECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE----CCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGS
T ss_pred EEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE----EEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHc
Confidence 33 455688899999999997655444443221111 1222335567776554 346778899998877765444
Q ss_pred CCCCCCCCCCCCceecceEcCccCCCCEEEEE--ecCCeEEEEEcCCCEEE--EeCCCC
Q 011336 405 GSLGFPDRGVSDKVLRPRILDSLRAHHVSQIS--TGLYHTVVVTDRGRLFG--FGDNER 459 (488)
Q Consensus 405 gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~v~--~G~~ht~~l~~~G~v~~--wG~n~~ 459 (488)
-..+.+... ...- .++..++.+. .+....++++++|++.. +-.++-
T Consensus 198 ~~~~R~gkG--------v~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~i 247 (276)
T 3no0_A 198 PKTNRGVKG--------TEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDI 247 (276)
T ss_dssp CCCCTTCCC--------EECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGGS
T ss_pred ccCCCCCcc--------eEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHHC
Confidence 333322110 0000 1223454442 34567889999999988 654443
No 30
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=88.41 E-value=16 Score=33.89 Aligned_cols=302 Identities=8% Similarity=-0.034 Sum_probs=137.1
Q ss_pred CceEEEec------CceeEee-eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCC-CCCCEEEEEeCCc------eeEE
Q 011336 112 GNMQITTG------RYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFP-SAAHVVQVSASEN------HAAF 177 (488)
Q Consensus 112 ~i~~i~~G------~~h~~~l-~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~-~~~~i~~i~~G~~------~~~~ 177 (488)
.|..++.- ....++- .++.|..|-...... .........+ ....|..++.... ..+.
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE---------IRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC---------EEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE---------EEeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 35555554 3334444 788889886543211 1111111111 2235666555433 4555
Q ss_pred EEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEec---CCeeEEEEeCCcEEEEECCCCCccCCCCCC
Q 011336 178 VLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG---LNFTGFLTIRGHVHTCGSNTHGQLGHGDTL 254 (488)
Q Consensus 178 lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G---~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~ 254 (488)
-..||.|..|-.... ... ..+. .....|..++.. ....+.-..+|.|+.|-.....
T Consensus 91 ~~~dg~i~v~d~~~~---------~~~---~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------- 149 (366)
T 3k26_A 91 AGSRGIIRIINPITM---------QCI---KHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT-------- 149 (366)
T ss_dssp EETTCEEEEECTTTC---------CEE---EEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE--------
T ss_pred ecCCCEEEEEEchhc---------eEe---eeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe--------
Confidence 567899999954431 111 1111 123356766653 3455555678999999542211
Q ss_pred CCCCceeecC-CCCCCCEEEEEeC--CCeEEEEEcCCcEEEecCCCCCccC-------CCCC--CCCcCce-----eeee
Q 011336 255 DRPTPKSIAP-LEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLG-------HGEQ--HDELQPR-----AIQT 317 (488)
Q Consensus 255 ~~~~p~~i~~-~~~~~~i~~i~~G--~~~~~~lt~~G~v~~wG~n~~gqlG-------~~~~--~~~~~p~-----~i~~ 317 (488)
....+.. ......|..++.. ..+.+....+|.|+.|-......+. .... .....+. ....
T Consensus 150 ---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (366)
T 3k26_A 150 ---LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFST 226 (366)
T ss_dssp ---EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEE
T ss_pred ---EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccc
Confidence 1111110 1122567777765 3456666788999999764321110 0000 0000000 0000
Q ss_pred cccCCeeEEEEEeCCCeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCC--CCCcEE--EEEee--CCeEEEEE
Q 011336 318 FRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSL--KSHLAV--QVCAR--KRKTFVLV 391 (488)
Q Consensus 318 ~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~--~~~~i~--~v~~G--~~~t~~lt 391 (488)
.......|..++......+.-..+|.|..|-.....+.-............+..+ ....|. .++.. ....++-.
T Consensus 227 ~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~ 306 (366)
T 3k26_A 227 RDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGN 306 (366)
T ss_dssp CSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEEC
T ss_pred ccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEe
Confidence 1111223444444455666677899999997643222100000000011111111 011122 22222 34444456
Q ss_pred cCCcEEEEEcCCCCCCCCCCCCCCCceecceEcCccC-CCCEEEEEecC--CeEEEEEcCCCEEEEeC
Q 011336 392 DTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLR-AHHVSQISTGL--YHTVVVTDRGRLFGFGD 456 (488)
Q Consensus 392 ~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~-~~~v~~v~~G~--~ht~~l~~~G~v~~wG~ 456 (488)
.+|.|+.|-....... ......+.... ...|..++... ...+.-..||.|+.|-.
T Consensus 307 ~dg~i~vwd~~~~~~~----------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 307 QVGKLYVWDLEVEDPH----------KAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp TTSCEEEEECCSSSGG----------GCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred cCCcEEEEECCCCCCc----------cccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 7889999874321100 00111222111 34677776653 34455667888888843
No 31
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=87.74 E-value=20 Score=34.28 Aligned_cols=148 Identities=12% Similarity=0.072 Sum_probs=83.6
Q ss_pred EEEEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEec--CCeeEEEEeCCcEEEEEC
Q 011336 165 VVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHTCGS 242 (488)
Q Consensus 165 i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G--~~h~~~lt~~G~vy~wG~ 242 (488)
+..++-.....++...+|.|+.|-..... ............|..|+-. ..+.++-..+|.|..|-.
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~------------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGS------------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCC------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCc------------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 44466556778888899999999765411 0111111123345666543 344555567899999953
Q ss_pred CCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCC
Q 011336 243 NTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKG 322 (488)
Q Consensus 243 n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~ 322 (488)
.... ....+.. ....|..++......+.-..+|.|+.|-..... . .+..+....
T Consensus 164 ~~~~-----------~~~~~~~--~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~--~~~~~~~~~ 217 (401)
T 4aez_A 164 ESQT-----------KLRTMAG--HQARVGCLSWNRHVLSSGSRSGAIHHHDVRIAN-----------H--QIGTLQGHS 217 (401)
T ss_dssp TTCC-----------EEEEECC--CSSCEEEEEEETTEEEEEETTSEEEEEETTSSS-----------C--EEEEEECCS
T ss_pred cCCe-----------EEEEecC--CCCceEEEEECCCEEEEEcCCCCEEEEecccCc-----------c--eeeEEcCCC
Confidence 2211 1111211 125688888777777778889999999654211 1 111122222
Q ss_pred eeEEEEEeCC--CeEEEEeCCCcEEEEecC
Q 011336 323 IHVVRVSAGD--EHVVALDSSGYVYTWGKG 350 (488)
Q Consensus 323 ~~i~~i~~g~--~h~~~lt~~G~vy~wG~n 350 (488)
..|..++... .+.+.-..+|.|+.|-..
T Consensus 218 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 218 SEVCGLAWRSDGLQLASGGNDNVVQIWDAR 247 (401)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEccCC
Confidence 3566665543 344445778999999754
No 32
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=83.21 E-value=19 Score=32.95 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=13.7
Q ss_pred ceeEeeeCCcEEEEeCCC
Q 011336 121 YHTLLISNSSVFSCGSSL 138 (488)
Q Consensus 121 ~h~~~l~~g~vy~wG~n~ 138 (488)
.|++++.+++||++|-..
T Consensus 48 ~~~~~~~~~~lyv~GG~~ 65 (306)
T 3ii7_A 48 DAACVFWDNVVYILGGSQ 65 (306)
T ss_dssp SCEEEEETTEEEEECCBS
T ss_pred eeEEEEECCEEEEEeCCC
Confidence 466666889999999654
No 33
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=83.08 E-value=31 Score=32.38 Aligned_cols=208 Identities=8% Similarity=-0.005 Sum_probs=101.7
Q ss_pred CCEEEEEeCC---ceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCE-Eec----cCCCCCeEEEEe---cCCeeEEE
Q 011336 163 AHVVQVSASE---NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPR-LVE----ALKGVPCKQVTA---GLNFTGFL 231 (488)
Q Consensus 163 ~~i~~i~~G~---~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~-~v~----~~~~~~i~~V~~---G~~h~~~l 231 (488)
..|..++... ...+.-..||.|..|-.......... ...+. ... ......|..++. +....+.-
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 118 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY-----TCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE-----EECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE-----eccccccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence 3677777654 34445567999999976552211100 00000 000 012335677765 34455566
Q ss_pred EeCCcEEEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC-----CeEEEEEcCCcEEEecCCCCCccCCCCC
Q 011336 232 TIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP-----SYMLAVTGNGVVYSFGSGSNFCLGHGEQ 306 (488)
Q Consensus 232 t~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~-----~~~~~lt~~G~v~~wG~n~~gqlG~~~~ 306 (488)
..+|.|..|-..... +...... ...+..+.... ...++-..+|.|+.|-.....
T Consensus 119 ~~d~~i~iwd~~~~~------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~------- 177 (408)
T 4a11_B 119 SFDKTLKVWDTNTLQ------------TADVFNF--EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS------- 177 (408)
T ss_dssp ETTSEEEEEETTTTE------------EEEEEEC--SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC-------
T ss_pred eCCCeEEEeeCCCCc------------cceeccC--CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc-------
Confidence 778999999533211 1111111 13455555443 256666788999999653211
Q ss_pred CCCcCceeeeecccCCeeEEEEEeCCCe---EEEEeCCCcEEEEecCCCCC-CCCC---CCCCcccceeecCCCCCcEEE
Q 011336 307 HDELQPRAIQTFRRKGIHVVRVSAGDEH---VVALDSSGYVYTWGKGYCGA-LGHG---DEIDKTLPEPLSSLKSHLAVQ 379 (488)
Q Consensus 307 ~~~~~p~~i~~~~~~~~~i~~i~~g~~h---~~~lt~~G~vy~wG~n~~gq-lG~~---~~~~~~~p~~v~~~~~~~i~~ 379 (488)
.+..+......|..++..... .+.-..+|.|+.|-...... +-.- .......+..........|..
T Consensus 178 -------~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 250 (408)
T 4a11_B 178 -------CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNG 250 (408)
T ss_dssp -------CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEE
T ss_pred -------eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeE
Confidence 111111122346666554332 34467889999997643221 1000 000000011111112334666
Q ss_pred EEeeC--CeEEEEEcCCcEEEEEcCC
Q 011336 380 VCARK--RKTFVLVDTGSVYGFGWMG 403 (488)
Q Consensus 380 v~~G~--~~t~~lt~~G~vy~wG~n~ 403 (488)
++... .+.+....||.|+.|-...
T Consensus 251 ~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 251 LCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEEcCCCCEEEEecCCCeEEEEECCC
Confidence 66643 3455566889999998544
No 34
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=82.63 E-value=32 Score=32.29 Aligned_cols=215 Identities=11% Similarity=0.072 Sum_probs=114.0
Q ss_pred EEecCCeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCce-eecCCCCCCCEEEEEeCC-----CeEEEEEcCCcEEEec
Q 011336 221 VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPK-SIAPLEEVGSVVQIAAGP-----SYMLAVTGNGVVYSFG 294 (488)
Q Consensus 221 V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~-~i~~~~~~~~i~~i~~G~-----~~~~~lt~~G~v~~wG 294 (488)
.+....+.+++|+.|++|..-....-.. .....-.|. .+..+.+.++|+.+.+.. ...+++|++|.+.-.-
T Consensus 49 ~~~t~d~ll~fT~~Gr~y~~~~~~lp~~---~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~ 125 (327)
T 3uc1_A 49 VCSTHDLILFFTTQGRVYRAKAYDLPEA---SRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSK 125 (327)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBC---CSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEE
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCcCC---CccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeE
Confidence 3456667788999999998854322111 111111221 112244457888887754 4788999999888765
Q ss_pred CCCCCccCCCCCCCCcCceeeeecccCCeeEEE--EEeCCCeEEEEeCCCcEEEEecC--CCCCCCCCCCCCcccceeec
Q 011336 295 SGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVR--VSAGDEHVVALDSSGYVYTWGKG--YCGALGHGDEIDKTLPEPLS 370 (488)
Q Consensus 295 ~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~--i~~g~~h~~~lt~~G~vy~wG~n--~~gqlG~~~~~~~~~p~~v~ 370 (488)
..++-.. .. .-.....+.. +..++. +..+..+.+++|++|++|.+-.. +--.+|....-. ..+.
T Consensus 126 l~~~~~~------~r-~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv----~~i~ 193 (327)
T 3uc1_A 126 LTDFDSN------RS-GGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGV----QGMR 193 (327)
T ss_dssp GGGGCCC------CS-SCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCE----ESSC
T ss_pred HHHhhcc------cc-CceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCe----eeec
Confidence 4332110 00 1111111221 223333 33466778889999999999876 433333322111 1233
Q ss_pred CCCCCcEEEEEeeC--CeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceEcCcc-C-CCCEEEEE--ecCCeEEE
Q 011336 371 SLKSHLAVQVCARK--RKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSL-R-AHHVSQIS--TGLYHTVV 444 (488)
Q Consensus 371 ~~~~~~i~~v~~G~--~~t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~-~-~~~v~~v~--~G~~ht~~ 444 (488)
..++.+|+.+..-. .+.+++|++|.+--.=-.++-..+.+.. -...-.+ . +..++.+. .+..+.++
T Consensus 194 L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~--------G~~~~~l~~~~d~lv~~~~~~~~~~i~l 265 (327)
T 3uc1_A 194 FNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGK--------GVLTVMYDRRRGRLVGALIVDDDSELYA 265 (327)
T ss_dssp CCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSC--------CEESSCCCTTTCSEEEEEEECTTCEEEE
T ss_pred CCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCC--------cEEEEEecCCCCeEEEEEEeCCCccEEE
Confidence 33456777776643 4577788888766554333222111110 0111111 1 22344433 35678999
Q ss_pred EEcCCCEEEEeCCC
Q 011336 445 VTDRGRLFGFGDNE 458 (488)
Q Consensus 445 l~~~G~v~~wG~n~ 458 (488)
++++|++..+-.++
T Consensus 266 ~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 266 VTSGGGVIRTAARQ 279 (327)
T ss_dssp EEGGGCEEEEEGGG
T ss_pred EcCCCeEEEEehhh
Confidence 99999998884443
No 35
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=82.37 E-value=33 Score=32.20 Aligned_cols=231 Identities=10% Similarity=-0.050 Sum_probs=107.1
Q ss_pred CCceEEEecCceeEee--eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeCCc--eeEEEEcCCcEEE
Q 011336 111 AGNMQITTGRYHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN--HAAFVLQSGQVFT 186 (488)
Q Consensus 111 ~~i~~i~~G~~h~~~l--~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G~~--~~~~lt~~G~vy~ 186 (488)
..|..++--....++. .+|.|..|=-.....+. ............|..|+.... ..+.-..||.|..
T Consensus 95 ~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~---------~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~i 165 (357)
T 4g56_B 95 AGVTDVAWVSEKGILVASDSGAVELWEILEKESLL---------VNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKV 165 (357)
T ss_dssp SCEEEEEEETTTEEEEEETTSCEEEC--------C---------CCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred CCEEEEEEcCCCCEEEEECCCEEEEeeccccceeE---------EEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 3466665544444444 77888887322111000 000011112235666665543 3334457888998
Q ss_pred EeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEec---CCeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCceeec
Q 011336 187 CGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG---LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIA 263 (488)
Q Consensus 187 wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G---~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~ 263 (488)
|-.+..- ....+.. ....|..|+.. ....+.-..||.|..|=... ++ ....+.
T Consensus 166 wd~~~~~------------~~~~~~~-h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~-~~----------~~~~~~ 221 (357)
T 4g56_B 166 WDLSQKA------------VLKSYNA-HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK-PK----------PATRID 221 (357)
T ss_dssp EETTTTE------------EEEEECC-CSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS-SS----------CBCBCC
T ss_pred EECCCCc------------EEEEEcC-CCCCEEEEEEccCCCceeeeeccCCceEEEECCC-Cc----------eeeeee
Confidence 8544310 0011111 12346666542 23445556789999983211 10 001111
Q ss_pred CCCCCCCEEEEEeC---CCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCC---CeEEE
Q 011336 264 PLEEVGSVVQIAAG---PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD---EHVVA 337 (488)
Q Consensus 264 ~~~~~~~i~~i~~G---~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~---~h~~~ 337 (488)
.......+..++.. ....+.-..++.|+.|-.... ..+..+......|..++... ...+.
T Consensus 222 ~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~--------------~~~~~~~~~~~~v~~l~~sp~~~~~las 287 (357)
T 4g56_B 222 FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP--------------DSAQTSAVHSQNITGLAYSYHSSPFLAS 287 (357)
T ss_dssp CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG--------------GGCEEECCCSSCEEEEEECSSSSCCEEE
T ss_pred eccccccccchhhhhcccceEEEeecccceeEEECCCC--------------cEeEEEeccceeEEEEEEcCCCCCEEEE
Confidence 11112356666654 223333467888998854321 11112222233566666542 23333
Q ss_pred EeCCCcEEEEecCCCCCCCCCCCCCcccceeecCC-CCCcEEEEEee---CCeEEEEEcCCcEEEEEcC
Q 011336 338 LDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSL-KSHLAVQVCAR---KRKTFVLVDTGSVYGFGWM 402 (488)
Q Consensus 338 lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~-~~~~i~~v~~G---~~~t~~lt~~G~vy~wG~n 402 (488)
-..||.|+.|-... ++ .+..+ ....|..|+.. ....+.-..||+|+.|=-.
T Consensus 288 gs~D~~i~iwd~~~-~~-------------~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 288 ISEDCTVAVLDADF-SE-------------VFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp EETTSCEEEECTTS-CE-------------EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred EeCCCEEEEEECCC-Cc-------------EeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 56889999995421 11 11111 12347777653 2233334578999999743
No 36
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=81.89 E-value=29 Score=31.16 Aligned_cols=266 Identities=8% Similarity=-0.050 Sum_probs=133.6
Q ss_pred CceEEEecCceeEee--eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEe--CCceeEEEEcCCcEEEE
Q 011336 112 GNMQITTGRYHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSA--SENHAAFVLQSGQVFTC 187 (488)
Q Consensus 112 ~i~~i~~G~~h~~~l--~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~--G~~~~~~lt~~G~vy~w 187 (488)
.|..++.-....++. .||.|+.|-.... . ....+. .....|..++. .....+.-..+|.+..|
T Consensus 20 ~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~---------~---~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 20 DVRDVVAVDDSKVASVSRDGTVRLWSKDDQ---------W---LGTVVY-TGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp CEEEEEEEETTEEEEEETTSEEEEEEESSS---------E---EEEEEE-ECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred CcEEEEecCCCEEEEEEcCCcEEEEECCCC---------E---EEEEee-cCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 355555422223333 7899999964321 0 111111 11234555443 34455555677888877
Q ss_pred eCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecCCeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCceeecCCCC
Q 011336 188 GDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEE 267 (488)
Q Consensus 188 G~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~ 267 (488)
-..... . ..+..........|..++.-....+.-..+|.|..|- .++ ....+...
T Consensus 87 ~~~~~~------~----~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d---~~~----------~~~~~~~~-- 141 (313)
T 3odt_A 87 PLFATS------G----EDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK---EGS----------LVYNLQAH-- 141 (313)
T ss_dssp ETTCCT------T----SCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE---TTE----------EEEEEECC--
T ss_pred EeeecC------C----CCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc---CCc----------EEEecccC--
Confidence 544311 0 0011111112345777777667777778899999993 110 01111111
Q ss_pred CCCEEEEEe---CCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeeccc-CCeeEEEEEeCC-CeEEEEeCCC
Q 011336 268 VGSVVQIAA---GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRR-KGIHVVRVSAGD-EHVVALDSSG 342 (488)
Q Consensus 268 ~~~i~~i~~---G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~-~~~~i~~i~~g~-~h~~~lt~~G 342 (488)
...+..+.. .....+.-..+|.|..|-.. . .+..+.. ....|..++... ...++-..+|
T Consensus 142 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--------------~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg 205 (313)
T 3odt_A 142 NASVWDAKVVSFSENKFLTASADKTIKLWQND--------------K--VIKTFSGIHNDVVRHLAVVDDGHFISCSNDG 205 (313)
T ss_dssp SSCEEEEEEEETTTTEEEEEETTSCEEEEETT--------------E--EEEEECSSCSSCEEEEEEEETTEEEEEETTS
T ss_pred CCceeEEEEccCCCCEEEEEECCCCEEEEecC--------------c--eEEEEeccCcccEEEEEEcCCCeEEEccCCC
Confidence 145555544 56677777888999998411 0 1111111 122344443322 2255567889
Q ss_pred cEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEeeCC-eEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecc
Q 011336 343 YVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKR-KTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRP 421 (488)
Q Consensus 343 ~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~-~t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P 421 (488)
.|+.|-...... ...+. .....|..++.... ..++-..+|.|+.|-.... ++
T Consensus 206 ~i~i~d~~~~~~-----------~~~~~-~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~---------------~~ 258 (313)
T 3odt_A 206 LIKLVDMHTGDV-----------LRTYE-GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG---------------SL 258 (313)
T ss_dssp EEEEEETTTCCE-----------EEEEE-CCSSCEEEEEECTTSCEEEEETTSEEEEECTTTC---------------CE
T ss_pred eEEEEECCchhh-----------hhhhh-cCCceEEEEEEecCCCEEEEecCCEEEEEECCCC---------------ce
Confidence 999997543110 11111 12234666665433 4555667899999863221 01
Q ss_pred eEcCccCCCCEEEEEecCC-eEEEEEcCCCEEEEeCCC
Q 011336 422 RILDSLRAHHVSQISTGLY-HTVVVTDRGRLFGFGDNE 458 (488)
Q Consensus 422 ~~v~~~~~~~v~~v~~G~~-ht~~l~~~G~v~~wG~n~ 458 (488)
...-......|..++.... ..++...||.|+.|=.+.
T Consensus 259 ~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 259 KQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp EEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCG
T ss_pred eEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCC
Confidence 1111112335777765433 355677889999996654
No 37
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=81.89 E-value=30 Score=31.39 Aligned_cols=198 Identities=12% Similarity=0.037 Sum_probs=95.5
Q ss_pred EeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecC-CeeEEEEeCCcEEEEECCCCCc
Q 011336 169 SASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL-NFTGFLTIRGHVHTCGSNTHGQ 247 (488)
Q Consensus 169 ~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~-~h~~~lt~~G~vy~wG~n~~gq 247 (488)
..+.-..++++.||+++..+......+..... . ...+.... .....|..++... ...++...+|.|..|-......
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~-~-~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIP-R-HARQINTL-NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGN 84 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCC-S-EEEEEEEE-CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTC
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccC-C-ccccceec-cCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCc
Confidence 34445677888999999887655332222111 1 11111111 1123455555432 2233333488888885432211
Q ss_pred cCCCCCCCCCCceeecCCCCCCCEEEEEeCC--CeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeE
Q 011336 248 LGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHV 325 (488)
Q Consensus 248 lG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~--~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i 325 (488)
......+........|..++... ...++-..+|.|+.|-.... .+.....+......|
T Consensus 85 --------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~------------~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 85 --------KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP------------TPRIKAELTSSAPAC 144 (337)
T ss_dssp --------CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--------------EEEEEEECSSSCE
T ss_pred --------eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC------------CcceeeecccCCCce
Confidence 11111111111224676666653 34555567889999854321 111222222223346
Q ss_pred EEEEeC--CCeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEee--CCeEEEEEcCCcEEEEEc
Q 011336 326 VRVSAG--DEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR--KRKTFVLVDTGSVYGFGW 401 (488)
Q Consensus 326 ~~i~~g--~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G--~~~t~~lt~~G~vy~wG~ 401 (488)
..++.. ..+.+.-..+|.|+.|-..... ....+. .....|..++.. ....+....+|.|+.|-.
T Consensus 145 ~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-----------~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~ 212 (337)
T 1gxr_A 145 YALAISPDSKVCFSCCSDGNIAVWDLHNQT-----------LVRQFQ-GHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212 (337)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTE-----------EEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCc-----------eeeeee-cccCceEEEEECCCCCEEEEEecCCcEEEEEC
Confidence 555543 3344556788999998653210 111111 123346666553 334455567889999874
No 38
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=81.52 E-value=40 Score=32.61 Aligned_cols=240 Identities=7% Similarity=-0.014 Sum_probs=124.4
Q ss_pred CCceEEEecCceeEee--eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeC----CceeEEEEcCCcE
Q 011336 111 AGNMQITTGRYHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS----ENHAAFVLQSGQV 184 (488)
Q Consensus 111 ~~i~~i~~G~~h~~~l--~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G----~~~~~~lt~~G~v 184 (488)
..|..++.-....++. .||.|..|--... . ....+. .....|..++.- ....+.-..||.|
T Consensus 163 ~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~---------~---~~~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i 229 (464)
T 3v7d_B 163 GGVWALKYAHGGILVSGSTDRTVRVWDIKKG---------C---CTHVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTL 229 (464)
T ss_dssp SCEEEEEECSTTEEEEEETTSCEEEEETTTT---------E---EEEEEC-CCSSCEEEEEEEESSSCEEEEEEETTSCE
T ss_pred cCEEEEEEcCCCEEEEEeCCCCEEEEECCCC---------c---EEEEEC-CCCCccEEEEEecCCCCCEEEEEcCCCcE
Confidence 3466666554444444 7899999964321 0 111111 122356555542 2455666789999
Q ss_pred EEEeCCCCCcccCCCCCC--------ceeCCEEecc--CCCCCeEEEEecCCeeEEEEeCCcEEEEECCCCCccCCCCCC
Q 011336 185 FTCGDNSSFCCGHRDTNR--------PIFRPRLVEA--LKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTL 254 (488)
Q Consensus 185 y~wG~n~~gqlG~~~~~~--------~~~~p~~v~~--~~~~~i~~V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~ 254 (488)
..|-.............. +...|..+.. -....|..++......+.-..+|.|..|-......
T Consensus 230 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~------- 302 (464)
T 3v7d_B 230 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC------- 302 (464)
T ss_dssp EEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEE-------
T ss_pred EEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-------
Confidence 999765532221110000 0000101111 12235677776667777778899999995421110
Q ss_pred CCCCceeecCCCCCCCEEEEEeC--CCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCC
Q 011336 255 DRPTPKSIAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD 332 (488)
Q Consensus 255 ~~~~p~~i~~~~~~~~i~~i~~G--~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~ 332 (488)
...+.. ....|..++.. ....+.-..+|.|+.|-.... ..+..+......|..++...
T Consensus 303 ----~~~~~~--~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~--------------~~~~~~~~h~~~v~~~~~~~ 362 (464)
T 3v7d_B 303 ----LYILSG--HTDRIYSTIYDHERKRCISASMDTTIRIWDLENG--------------ELMYTLQGHTALVGLLRLSD 362 (464)
T ss_dssp ----EEEECC--CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT--------------EEEEEECCCSSCEEEEEECS
T ss_pred ----EEEecC--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--------------cEEEEEeCCCCcEEEEEEcC
Confidence 111111 11456666554 346666778889999864321 12222333334677777777
Q ss_pred CeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcC
Q 011336 333 EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWM 402 (488)
Q Consensus 333 ~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~t~~lt~~G~vy~wG~n 402 (488)
.+.+.-..||.|..|-.....+ ...........+..+..... .++...+|.|+.|-..
T Consensus 363 ~~l~s~s~dg~v~vwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-~l~~~~dg~i~iwd~~ 420 (464)
T 3v7d_B 363 KFLVSAAADGSIRGWDANDYSR-----------KFSYHHTNLSAITTFYVSDN-ILVSGSENQFNIYNLR 420 (464)
T ss_dssp SEEEEEETTSEEEEEETTTCCE-----------EEEEECTTCCCEEEEEECSS-EEEEEETTEEEEEETT
T ss_pred CEEEEEeCCCcEEEEECCCCce-----------eeeecCCCCccEEEEEeCCC-EEEEecCCeEEEEECC
Confidence 7777788999999997643211 11111112223444444333 4455558899998743
No 39
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=80.88 E-value=41 Score=32.38 Aligned_cols=257 Identities=7% Similarity=-0.010 Sum_probs=120.2
Q ss_pred CceEEEecCc--eeEee--eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeCC---ceeEEEEcCCcE
Q 011336 112 GNMQITTGRY--HTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE---NHAAFVLQSGQV 184 (488)
Q Consensus 112 ~i~~i~~G~~--h~~~l--~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G~---~~~~~lt~~G~v 184 (488)
.|..++.-.. +.++. .+|.|++|-.......-...... .....+. .....|..++... ...+.-..+|.|
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~--~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i 206 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGEC--QPDLRLR-GHQKEGYGLSWNPNLNGYLLSASDDHTI 206 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCC--CCSEEEE-CCSSCCCCEEECTTSTTEEEEECTTSCE
T ss_pred cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccC--CCcEEec-CCCCCeEEEEeCCCCCCeEEEEeCCCeE
Confidence 4556665543 33443 78999999765421110000000 0011111 1112344444332 244555678999
Q ss_pred EEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEe---cCCeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCce-
Q 011336 185 FTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA---GLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPK- 260 (488)
Q Consensus 185 y~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~---G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~- 260 (488)
..|-.+...... ....+..........|..|+. +....+....+|.|+.|-...... ..+.
T Consensus 207 ~vwd~~~~~~~~------~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~---------~~~~~ 271 (430)
T 2xyi_A 207 CLWDINATPKEH------RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT---------SKPSH 271 (430)
T ss_dssp EEEETTSCCBGG------GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS---------SSCSE
T ss_pred EEEeCCCCCCCC------ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC---------Cccee
Confidence 999766522110 111111111112334666665 334444556789999995442210 1111
Q ss_pred eecCCCCCCCEEEEEeCC---CeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCCCe---
Q 011336 261 SIAPLEEVGSVVQIAAGP---SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEH--- 334 (488)
Q Consensus 261 ~i~~~~~~~~i~~i~~G~---~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h--- 334 (488)
.+... ...|..|+... ...+.-..+|.|..|-.....+ |. ..+......|..|+.....
T Consensus 272 ~~~~~--~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-----------~~--~~~~~h~~~v~~i~~sp~~~~~ 336 (430)
T 2xyi_A 272 TVDAH--TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-----------KL--HSFESHKDEIFQVQWSPHNETI 336 (430)
T ss_dssp EEECC--SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-----------CS--EEEECCSSCEEEEEECSSCTTE
T ss_pred EeecC--CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-----------Ce--EEeecCCCCEEEEEECCCCCCE
Confidence 11111 14576776643 2344556788999997643221 11 1111122356666664432
Q ss_pred EEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCC--CCcEEEEEeeCC---eEEEEEcCCcEEEEEc
Q 011336 335 VVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLK--SHLAVQVCARKR---KTFVLVDTGSVYGFGW 401 (488)
Q Consensus 335 ~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~v~~G~~---~t~~lt~~G~vy~wG~ 401 (488)
.+.-..+|.|..|-....+..-.........|..+.... ...|..++.... ..+....+|.|..|--
T Consensus 337 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 337 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp EEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred EEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence 344567889999976543211100000000122332222 334666665433 4455667888888874
No 40
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=80.80 E-value=0.36 Score=49.82 Aligned_cols=35 Identities=11% Similarity=0.195 Sum_probs=27.8
Q ss_pred ccccCChHHHHHHHhcCCCC-cccccccccccccccCC
Q 011336 9 SIEELPSHLIFEILTSGRLS-AVDLAHLELTSKTFGGS 45 (488)
Q Consensus 9 ~~~~lp~~i~~~~l~~~~l~-~~d~~~L~~t~~~f~~~ 45 (488)
.+.+||+||+.+||. ||+ ++|+++.+.+||.++..
T Consensus 5 ~~~~LPdevL~~If~--~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 5 IALSFPEEVLEHVFS--FIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp -----CHHHHHHHHH--TCCCHHHHHHHHTSCHHHHHH
T ss_pred chhhCCHHHHHHHHh--hcCCchhHHHHHHHHHHHHHh
Confidence 357899999999999 999 99999999999977644
No 41
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=80.40 E-value=41 Score=31.97 Aligned_cols=267 Identities=9% Similarity=0.005 Sum_probs=134.6
Q ss_pred EEEecCceeEee-eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeC--CceeEEEEcCCcEEEEeCCC
Q 011336 115 QITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS--ENHAAFVLQSGQVFTCGDNS 191 (488)
Q Consensus 115 ~i~~G~~h~~~l-~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G--~~~~~~lt~~G~vy~wG~n~ 191 (488)
.++-...+.++. .++.|+.|-... |+ ....+.......|..++.. +...++-..+|.|..|-...
T Consensus 98 ~~~~s~~~l~~~~~d~~v~lw~~~~-~~-----------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 165 (401)
T 4aez_A 98 LLDWSNLNVVAVALERNVYVWNADS-GS-----------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165 (401)
T ss_dssp CEEECTTSEEEEEETTEEEEEETTT-CC-----------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEeecCCCEEEEECCCeEEEeeCCC-Cc-----------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC
Confidence 455555666666 999999997542 11 1222333334467777654 34455556789999996543
Q ss_pred CCcccCCCCCCceeCCEEeccCCCCCeEEEEecCCeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCceeecCCCCCCCE
Q 011336 192 SFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSV 271 (488)
Q Consensus 192 ~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i 271 (488)
... ...+. .....|..++......+.-..+|.|+.|-....++ ....+... ...|
T Consensus 166 ~~~------------~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~~--~~~v 220 (401)
T 4aez_A 166 QTK------------LRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH----------QIGTLQGH--SSEV 220 (401)
T ss_dssp CCE------------EEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC----------EEEEEECC--SSCE
T ss_pred CeE------------EEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcc----------eeeEEcCC--CCCe
Confidence 110 11111 12345777777666667778899999995432111 11111111 1467
Q ss_pred EEEEeC--CCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCC--CeEEEEe---CCCcE
Q 011336 272 VQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD--EHVVALD---SSGYV 344 (488)
Q Consensus 272 ~~i~~G--~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~--~h~~~lt---~~G~v 344 (488)
..++.. ..+.+.-..+|.|+.|-.... .+ +..+......|..++... .+.++.. .+|.|
T Consensus 221 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~------------~~--~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i 286 (401)
T 4aez_A 221 CGLAWRSDGLQLASGGNDNVVQIWDARSS------------IP--KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQI 286 (401)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTCS------------SE--EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEE
T ss_pred eEEEEcCCCCEEEEEeCCCeEEEccCCCC------------Cc--cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEE
Confidence 766664 345556677899999965431 11 111111222344444432 2333332 58888
Q ss_pred EEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEeeCCe-EEEE-E--cCCcEEEEEcCCCCCCCCCCCCCCCceec
Q 011336 345 YTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRK-TFVL-V--DTGSVYGFGWMGFGSLGFPDRGVSDKVLR 420 (488)
Q Consensus 345 y~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~-t~~l-t--~~G~vy~wG~n~~gqLG~~~~~~~~~~~~ 420 (488)
+.|-..... ....+. ....|..++..... .++. . .+|.|+.|-.... ....
T Consensus 287 ~i~d~~~~~-----------~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~------------~~~~ 341 (401)
T 4aez_A 287 HFWNAATGA-----------RVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS------------GLTK 341 (401)
T ss_dssp EEEETTTCC-----------EEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT------------EEEE
T ss_pred EEEECCCCC-----------EEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc------------ccee
Confidence 888653211 011111 12245555554322 2332 2 5788888874220 0111
Q ss_pred ceEcCccCCCCEEEEEec--CCeEEEEEcCCCEEEEeCCC
Q 011336 421 PRILDSLRAHHVSQISTG--LYHTVVVTDRGRLFGFGDNE 458 (488)
Q Consensus 421 P~~v~~~~~~~v~~v~~G--~~ht~~l~~~G~v~~wG~n~ 458 (488)
...+.. ....|..++.. ..+.+....||.|..|-...
T Consensus 342 ~~~~~~-h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 342 QVDIPA-HDTRVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp EEEEEC-CSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred EEEecC-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 111111 12345555544 33444455788888886554
No 42
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=79.53 E-value=38 Score=31.10 Aligned_cols=191 Identities=11% Similarity=-0.063 Sum_probs=99.4
Q ss_pred CCCEEEEEeCCc-----eeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEec--CCeeEEEEeC
Q 011336 162 AAHVVQVSASEN-----HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIR 234 (488)
Q Consensus 162 ~~~i~~i~~G~~-----~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G--~~h~~~lt~~ 234 (488)
...|..|+.... ..+.-..||.|..|-....++ .....+.. ....|..++.. ..+.+.-..+
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~----------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ----------TIPKAQQM-HTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC----------EEEEEEEE-CSSCEEEEEECTTSSEEEEEETT
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc----------eeEEEecc-ccCCEEEEEECcCCCEEEEEcCC
Confidence 347888887754 344446689999996544211 01111111 12346666543 3345555778
Q ss_pred CcEEEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEe--CCC--eEEEEEcCCcEEEecCCCCCccCCCCCCCCc
Q 011336 235 GHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAA--GPS--YMLAVTGNGVVYSFGSGSNFCLGHGEQHDEL 310 (488)
Q Consensus 235 G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~--G~~--~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~ 310 (488)
|.|..|-..... +..+.. ....|..++. ..+ +.+.-..+|.|+.|-....-
T Consensus 108 g~v~iwd~~~~~------------~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----------- 162 (368)
T 3mmy_A 108 KTAKMWDLSSNQ------------AIQIAQ--HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN----------- 162 (368)
T ss_dssp SEEEEEETTTTE------------EEEEEE--CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-----------
T ss_pred CcEEEEEcCCCC------------ceeecc--ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-----------
Confidence 999999543211 111111 2256777775 332 34555678999999643211
Q ss_pred CceeeeecccCCeeEEEEEeCCCeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCC--CCcEEEEEeeCCe--
Q 011336 311 QPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLK--SHLAVQVCARKRK-- 386 (488)
Q Consensus 311 ~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~v~~G~~~-- 386 (488)
+.. .+... ..+..+..-....++.+.++.+..|-...... ....+.... ...+..+......
T Consensus 163 -~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (368)
T 3mmy_A 163 -PMM--VLQLP-ERCYCADVIYPMAVVATAERGLIVYQLENQPS----------EFRRIESPLKHQHRCVAIFKDKQNKP 228 (368)
T ss_dssp -CSE--EEECS-SCEEEEEEETTEEEEEEGGGCEEEEECSSSCE----------EEEECCCSCSSCEEEEEEEECTTSCE
T ss_pred -EEE--EEecC-CCceEEEecCCeeEEEeCCCcEEEEEeccccc----------hhhhccccccCCCceEEEcccCCCCC
Confidence 111 11111 14555555566777778888999887643110 111111111 1223334333333
Q ss_pred --EEEEEcCCcEEEEEcC
Q 011336 387 --TFVLVDTGSVYGFGWM 402 (488)
Q Consensus 387 --t~~lt~~G~vy~wG~n 402 (488)
.++-..+|.|..|-..
T Consensus 229 ~~~~~~~~dg~i~i~~~~ 246 (368)
T 3mmy_A 229 TGFALGSIEGRVAIHYIN 246 (368)
T ss_dssp EEEEEEETTSEEEEEESS
T ss_pred CeEEEecCCCcEEEEecC
Confidence 5666788999998754
No 43
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=75.92 E-value=47 Score=30.25 Aligned_cols=207 Identities=13% Similarity=0.036 Sum_probs=114.9
Q ss_pred CceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEec---CCeeEEEEeCCcEEEEECCCCCcc
Q 011336 172 ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG---LNFTGFLTIRGHVHTCGSNTHGQL 248 (488)
Q Consensus 172 ~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G---~~h~~~lt~~G~vy~wG~n~~gql 248 (488)
..+.+++|++|++|..-.... .... ... + ..++.+|+.+-+- ....+++|++|.+.-.-..++-+
T Consensus 35 ~~~ll~fT~~G~v~~~~~~~l---p~~~----~~~---l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~- 102 (276)
T 3no0_A 35 TEGLFLVSNRGRVYWIAGSQA---LQGS----KVS---L-KSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY- 102 (276)
T ss_dssp TSCEEEEETTSEEEEECSHHH---HTSE----ECC---C-SSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT-
T ss_pred CCEEEEEcCCCeEEEEEhhhC---ccCc----ccc---c-CCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh-
Confidence 456889999999997643221 0000 000 3 2346778888661 24678889999888775443321
Q ss_pred CCCCCCCCCCceeecCCCCCCCEEEEEe--CCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEE
Q 011336 249 GHGDTLDRPTPKSIAPLEEVGSVVQIAA--GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVV 326 (488)
Q Consensus 249 G~~~~~~~~~p~~i~~~~~~~~i~~i~~--G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~ 326 (488)
.........+.+...++.+.. +.++.+++|++|++|.+-..+....|.+..- ++...+. .+.+|+
T Consensus 103 -------~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~G-----v~~i~L~-~~d~vv 169 (276)
T 3no0_A 103 -------KAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARG-----VQGIKLE-KNDETS 169 (276)
T ss_dssp -------CSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCC-----EECCCCC-TTCCEE
T ss_pred -------hcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCC-----EEEEccC-CCCEEE
Confidence 011222222333356666544 4557999999999999876554444432211 1111222 234566
Q ss_pred EEEeC--CCeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEE--eeCCeEEEEEcCCcEEE--EE
Q 011336 327 RVSAG--DEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVC--ARKRKTFVLVDTGSVYG--FG 400 (488)
Q Consensus 327 ~i~~g--~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~--~G~~~t~~lt~~G~vy~--wG 400 (488)
.+... ..+.+++|++|.+...-..++-..+.+....... ..+.+++.+. .++...+++|++|++.- +-
T Consensus 170 ~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i------~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~ 243 (276)
T 3no0_A 170 GLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS------GTKDTLVDLIPIKEEVELLITTKNGKAFYDKIN 243 (276)
T ss_dssp EEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC------CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEE
T ss_pred EEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE------cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeC
Confidence 65443 3466778999988877655443333221111111 1223344443 34567888999999988 76
Q ss_pred cCCCCCCCC
Q 011336 401 WMGFGSLGF 409 (488)
Q Consensus 401 ~n~~gqLG~ 409 (488)
-++.-.+|.
T Consensus 244 ~~~i~~~~R 252 (276)
T 3no0_A 244 QKDIPLSTK 252 (276)
T ss_dssp GGGSCBCCT
T ss_pred HHHCCCcCC
Confidence 555444443
No 44
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=75.07 E-value=0.67 Score=47.77 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=29.6
Q ss_pred cccCChHHHHHHHhcCCC-CcccccccccccccccC
Q 011336 10 IEELPSHLIFEILTSGRL-SAVDLAHLELTSKTFGG 44 (488)
Q Consensus 10 ~~~lp~~i~~~~l~~~~l-~~~d~~~L~~t~~~f~~ 44 (488)
..+||+||+.+||. || +++|+++.+.+||.++.
T Consensus 13 ~~~LPdeil~~I~~--~L~~~~d~~~~s~vck~W~~ 46 (592)
T 3ogk_B 13 CVATVDDVIEQVMT--YITDPKDRDSASLVCRRWFK 46 (592)
T ss_dssp CCCCGGGTHHHHHT--TCCCHHHHHHHTTSCHHHHH
T ss_pred cCCCCHHHHHHHHH--hcCCHHHHHHHHHHhHHHHH
Confidence 35899999999999 99 89999999999987654
No 45
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=74.48 E-value=74 Score=31.83 Aligned_cols=149 Identities=5% Similarity=-0.077 Sum_probs=76.3
Q ss_pred CCEEEEEeCCCeEEEEEc-CCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeC--CCeEEEEeCCCcEE
Q 011336 269 GSVVQIAAGPSYMLAVTG-NGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAG--DEHVVALDSSGYVY 345 (488)
Q Consensus 269 ~~i~~i~~G~~~~~~lt~-~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g--~~h~~~lt~~G~vy 345 (488)
..+..++....+.++-.. +|.|+.|-.... ++ .. ..+......|..++.. ..+.+.-..+|.|+
T Consensus 447 ~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~-~~-----------~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~ 513 (615)
T 1pgu_A 447 SPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL-EV-----------SF-DLKTPLRAKPSYISISPSETYIAAGDVMGKIL 513 (615)
T ss_dssp SCEEEEEECSSEEEEEETTTSCEEEEETTEE-EE-----------EE-ECSSCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCceEEEEcCCEEEEeecCCCeEEEEECCCc-cc-----------cc-cccCCccCceEEEEECCCCCEEEEcCCCCeEE
Confidence 456666666556666666 888888865331 00 00 1111122356666553 34445567889999
Q ss_pred EEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEee------------CCeEEEEEcCCcEEEEEcCCCCCCCCCCCC
Q 011336 346 TWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR------------KRKTFVLVDTGSVYGFGWMGFGSLGFPDRG 413 (488)
Q Consensus 346 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G------------~~~t~~lt~~G~vy~wG~n~~gqLG~~~~~ 413 (488)
.|-......+ ..+.......|..++.. ....+.-..||.|+.|-.....+
T Consensus 514 iw~~~~~~~~-----------~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------- 575 (615)
T 1pgu_A 514 LYDLQSREVK-----------TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK------- 575 (615)
T ss_dssp EEETTTTEEE-----------ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC-------
T ss_pred EeeCCCCcce-----------eEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCce-------
Confidence 9976431111 11111123346666653 33444456789999998533211
Q ss_pred CCCceecceEcCccCCCCEEEEEecCCe-EEEEEcCCCEEEEe
Q 011336 414 VSDKVLRPRILDSLRAHHVSQISTGLYH-TVVVTDRGRLFGFG 455 (488)
Q Consensus 414 ~~~~~~~P~~v~~~~~~~v~~v~~G~~h-t~~l~~~G~v~~wG 455 (488)
+...-......|..++..... .+....||.|..|-
T Consensus 576 -------~~~~~~~h~~~v~~l~~s~~~~l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 576 -------IIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 611 (615)
T ss_dssp -------CEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred -------echhhhcCccceEEEEEcCCCCeEEecCCceEEEEe
Confidence 111111112356665544322 33455688888884
No 46
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=74.30 E-value=45 Score=29.25 Aligned_cols=16 Identities=13% Similarity=0.059 Sum_probs=10.9
Q ss_pred eEEEEEcCCcEEEEEc
Q 011336 386 KTFVLVDTGSVYGFGW 401 (488)
Q Consensus 386 ~t~~lt~~G~vy~wG~ 401 (488)
+.++++.+|++|+-..
T Consensus 237 ~~i~~~~~g~l~v~~~ 252 (270)
T 1rwi_B 237 LAVAVDSDRTVYVADR 252 (270)
T ss_dssp EEEEECTTCCEEEEEG
T ss_pred eeEEECCCCCEEEEEC
Confidence 4566777788887653
No 47
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=74.11 E-value=58 Score=30.49 Aligned_cols=223 Identities=13% Similarity=0.087 Sum_probs=119.8
Q ss_pred EEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecC-----CeeEEEEeCCcEEEEEC
Q 011336 168 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL-----NFTGFLTIRGHVHTCGS 242 (488)
Q Consensus 168 i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~-----~h~~~lt~~G~vy~wG~ 242 (488)
.+....+.+++|+.|++|..-...--..+....+. .....+...++.+|+.+.+.. ...+++|++|.+.-.-.
T Consensus 49 ~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~--~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l 126 (327)
T 3uc1_A 49 VCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ--HVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKL 126 (327)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE--EHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEG
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE--EHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEH
Confidence 44566778889999999988654422222111111 111123333567888887654 46788899998876643
Q ss_pred CCCCccCCCCCCCCCCceeecCCCCCCCEEEE--EeCCCeEEEEEcCCcEEEecCC--CCCccCCCCCCCCcCceeeeec
Q 011336 243 NTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQI--AAGPSYMLAVTGNGVVYSFGSG--SNFCLGHGEQHDELQPRAIQTF 318 (488)
Q Consensus 243 n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i--~~G~~~~~~lt~~G~v~~wG~n--~~gqlG~~~~~~~~~p~~i~~~ 318 (488)
..+-.. ...-.....+.+...++.+ ..+.++.+++|++|++|.+-.. .-...|....- +++..+
T Consensus 127 ~~~~~~-------~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~G-----v~~i~L 194 (327)
T 3uc1_A 127 TDFDSN-------RSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSG-----VQGMRF 194 (327)
T ss_dssp GGGCCC-------CSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBC-----EESSCC
T ss_pred HHhhcc-------ccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCC-----eeeecC
Confidence 332110 0011222223233455543 3467789999999999998776 43333322111 112222
Q ss_pred ccCCeeEEEEEeCC--CeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCC-C-CCcEEEEE--eeCCeEEEEEc
Q 011336 319 RRKGIHVVRVSAGD--EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSL-K-SHLAVQVC--ARKRKTFVLVD 392 (488)
Q Consensus 319 ~~~~~~i~~i~~g~--~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~-~-~~~i~~v~--~G~~~t~~lt~ 392 (488)
. .+..|+.+..-. .+.+++|++|.+...-..++-..+.+... ...-.+ . +..++.+. .+....+++|+
T Consensus 195 ~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G-----~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~ 268 (327)
T 3uc1_A 195 N-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG-----VLTVMYDRRRGRLVGALIVDDDSELYAVTS 268 (327)
T ss_dssp C-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCC-----EESSCCCTTTCSEEEEEEECTTCEEEEEEG
T ss_pred C-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCc-----EEEEEecCCCCeEEEEEEeCCCccEEEEcC
Confidence 2 344677665543 35677899997776644333222221110 000011 1 22344333 35678899999
Q ss_pred CCcEEEEEcCCCCCCCCC
Q 011336 393 TGSVYGFGWMGFGSLGFP 410 (488)
Q Consensus 393 ~G~vy~wG~n~~gqLG~~ 410 (488)
+|++.-+--.+.-.+|..
T Consensus 269 ~G~~ir~~~~~i~~~gR~ 286 (327)
T 3uc1_A 269 GGGVIRTAARQVRKAGRQ 286 (327)
T ss_dssp GGCEEEEEGGGSCBCCTT
T ss_pred CCeEEEEehhhccccCCC
Confidence 999998876554444443
No 48
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=73.86 E-value=51 Score=29.76 Aligned_cols=18 Identities=11% Similarity=0.204 Sum_probs=13.7
Q ss_pred ceeEeeeCCcEEEEeCCC
Q 011336 121 YHTLLISNSSVFSCGSSL 138 (488)
Q Consensus 121 ~h~~~l~~g~vy~wG~n~ 138 (488)
.|++++.+++||++|-..
T Consensus 55 ~~~~~~~~~~l~v~GG~~ 72 (301)
T 2vpj_A 55 YVASVSLHDRIYVIGGYD 72 (301)
T ss_dssp SCEEEEETTEEEEECCBC
T ss_pred cccEEEECCEEEEEcCCC
Confidence 466666889999999654
No 49
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=73.14 E-value=34 Score=31.31 Aligned_cols=17 Identities=6% Similarity=0.089 Sum_probs=12.9
Q ss_pred ceeEeeeCCcEEEEeCC
Q 011336 121 YHTLLISNSSVFSCGSS 137 (488)
Q Consensus 121 ~h~~~l~~g~vy~wG~n 137 (488)
.|++++.+++||++|-.
T Consensus 63 ~~~~~~~~~~lyv~GG~ 79 (308)
T 1zgk_A 63 GLAGCVVGGLLYAVGGR 79 (308)
T ss_dssp SCEEEEETTEEEEECCE
T ss_pred cceEEEECCEEEEECCC
Confidence 46665688999999854
No 50
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=72.75 E-value=59 Score=29.93 Aligned_cols=199 Identities=11% Similarity=0.015 Sum_probs=100.9
Q ss_pred CCEEEEEeC----CceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEec----CCeeEEEEeC
Q 011336 163 AHVVQVSAS----ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG----LNFTGFLTIR 234 (488)
Q Consensus 163 ~~i~~i~~G----~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G----~~h~~~lt~~ 234 (488)
..|..++.. ....+.-..||.|..|-.... ...+..........|..++.- ....+....+
T Consensus 56 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 124 (379)
T 3jrp_A 56 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG-----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 124 (379)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT-----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC-----------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC
Confidence 467777764 455566677899999954431 000111111123346666654 3345566778
Q ss_pred CcEEEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeC---------------CCeEEEEEcCCcEEEecCCCCC
Q 011336 235 GHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG---------------PSYMLAVTGNGVVYSFGSGSNF 299 (488)
Q Consensus 235 G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G---------------~~~~~~lt~~G~v~~wG~n~~g 299 (488)
|.|..|=..... ...+..+... ...|..++.. ....++-..+|.|+.|-.....
T Consensus 125 ~~i~v~d~~~~~---------~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 193 (379)
T 3jrp_A 125 GKVSVVEFKENG---------TTSPIIIDAH--AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 193 (379)
T ss_dssp SEEEEEECCTTS---------CCCEEEEECC--TTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT
T ss_pred CcEEEEecCCCC---------ceeeEEecCC--CCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC
Confidence 999999543211 1111122111 1456666654 3456666788999998542210
Q ss_pred ccCCCCCCCCcCceeeeecccCCeeEEEEEeCCC-----eEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCC--
Q 011336 300 CLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE-----HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSL-- 372 (488)
Q Consensus 300 qlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~-----h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~-- 372 (488)
.....+..+......|..++.... ..+....+|.|..|-...... .....+...
T Consensus 194 ----------~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~~~~~ 254 (379)
T 3jrp_A 194 ----------QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG---------PWKKTLLKEEK 254 (379)
T ss_dssp ----------TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS---------CCEEEESSSSC
T ss_pred ----------cceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc---------cceeeeecccc
Confidence 011112222222335666666543 344457889999997543110 000111111
Q ss_pred CCCcEEEEEeeC--CeEEEEEcCCcEEEEEcC
Q 011336 373 KSHLAVQVCARK--RKTFVLVDTGSVYGFGWM 402 (488)
Q Consensus 373 ~~~~i~~v~~G~--~~t~~lt~~G~vy~wG~n 402 (488)
....|..++... .+.++-..||.|+.|-.+
T Consensus 255 ~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 255 FPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp CSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred CCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 223455555533 344445678999998744
No 51
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=72.21 E-value=50 Score=29.88 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=12.9
Q ss_pred ceeEeeeCCcEEEEeCC
Q 011336 121 YHTLLISNSSVFSCGSS 137 (488)
Q Consensus 121 ~h~~~l~~g~vy~wG~n 137 (488)
.|+++..+++||++|-.
T Consensus 54 ~~~~~~~~~~lyv~GG~ 70 (302)
T 2xn4_A 54 RAGMVYMAGLVFAVGGF 70 (302)
T ss_dssp SCEEEEETTEEEEESCB
T ss_pred cceEEEECCEEEEEeCc
Confidence 46665589999999854
No 52
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=70.83 E-value=76 Score=30.43 Aligned_cols=195 Identities=8% Similarity=0.029 Sum_probs=94.8
Q ss_pred eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeC---CceeEEEEcCCcEEEEeCCCCCcccCCCCCCc
Q 011336 127 SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS---ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRP 203 (488)
Q Consensus 127 ~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G---~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~ 203 (488)
.+|.|..|-....... .....+..........|..|+.. ....+.-..+|.|+.|-......
T Consensus 202 ~dg~i~vwd~~~~~~~------~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~--------- 266 (430)
T 2xyi_A 202 DDHTICLWDINATPKE------HRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT--------- 266 (430)
T ss_dssp TTSCEEEEETTSCCBG------GGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS---------
T ss_pred CCCeEEEEeCCCCCCC------CceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC---------
Confidence 6888888876542211 00111111112233367777763 34455566799999997654210
Q ss_pred eeCC-EEeccCCCCCeEEEEecC---CeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC-
Q 011336 204 IFRP-RLVEALKGVPCKQVTAGL---NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP- 278 (488)
Q Consensus 204 ~~~p-~~v~~~~~~~i~~V~~G~---~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~- 278 (488)
..+ ..+. .....|..|+... ...+.-..+|.|..|-....++ ....+... ...|..|+...
T Consensus 267 -~~~~~~~~-~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~----------~~~~~~~h--~~~v~~i~~sp~ 332 (430)
T 2xyi_A 267 -SKPSHTVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL----------KLHSFESH--KDEIFQVQWSPH 332 (430)
T ss_dssp -SSCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS----------CSEEEECC--SSCEEEEEECSS
T ss_pred -CcceeEee-cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC----------CeEEeecC--CCCEEEEEECCC
Confidence 011 1111 1223456665532 2233446688999996443221 11111111 14677777653
Q ss_pred --CeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCCC---eEEEEeCCCcEEEEecC
Q 011336 279 --SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE---HVVALDSSGYVYTWGKG 350 (488)
Q Consensus 279 --~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~---h~~~lt~~G~vy~wG~n 350 (488)
...+.-..+|.|..|-....+..-.........|..+..+......|..++.... ..+....+|.|..|-..
T Consensus 333 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 333 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp CTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 3355556788899886544221100000000112333333223335666665443 34446778888888653
No 53
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=69.58 E-value=1.4e+02 Score=33.13 Aligned_cols=222 Identities=10% Similarity=0.037 Sum_probs=99.1
Q ss_pred ceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEec-CCeeEEEEeCCcEEEEECCCCCccCCC
Q 011336 173 NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG-LNFTGFLTIRGHVHTCGSNTHGQLGHG 251 (488)
Q Consensus 173 ~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G-~~h~~~lt~~G~vy~wG~n~~gqlG~~ 251 (488)
...+.-..||.|..|-....... ... .....|..++.. ....++...+|.|+.|-.... +
T Consensus 1016 ~~l~s~~~dg~i~vwd~~~~~~~-------------~~~-~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~---- 1076 (1249)
T 3sfz_A 1016 KTLISSSEDSVIQVWNWQTGDYV-------------FLQ-AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITG-R---- 1076 (1249)
T ss_dssp SCEEEECSSSBEEEEETTTTEEE-------------CCB-CCSSCEEEEEECSSSEEEEEESSSEEEEEETTTT-C----
T ss_pred CEEEEEcCCCEEEEEECCCCceE-------------EEe-cCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCC-c----
Confidence 34444557889999965441111 000 112234554432 334455677899999954321 1
Q ss_pred CCCCCCCceeecCCCCCCCEEEEEeC--CCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEE
Q 011336 252 DTLDRPTPKSIAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVS 329 (488)
Q Consensus 252 ~~~~~~~p~~i~~~~~~~~i~~i~~G--~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~ 329 (488)
....+.... ..|..++.. ....+.-..+|.|+.|-...... +..+......|..++
T Consensus 1077 ------~~~~~~~~~--~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~--------------~~~l~~h~~~v~~~~ 1134 (1249)
T 3sfz_A 1077 ------IERDFTCHQ--GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP--------------LHELKGHNGCVRCSA 1134 (1249)
T ss_dssp ------CCEEEECCS--SCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC--------------SBCCCCCSSCEEEEE
T ss_pred ------eeEEEcccC--CcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce--------------eeeeccCCCcEEEEE
Confidence 111111111 233333332 23344455677888885432211 111111122455555
Q ss_pred eCCC--eEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeec---CCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCC
Q 011336 330 AGDE--HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLS---SLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGF 404 (488)
Q Consensus 330 ~g~~--h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~---~~~~~~i~~v~~G~~~t~~lt~~G~vy~wG~n~~ 404 (488)
...+ ..+.-..||.|+.|-......+.. ..|.... ......|..++...+..++++.+|.|..|--...
T Consensus 1135 ~s~dg~~lat~~~dg~i~vwd~~~~~~~~~------~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g~v~vwd~~~g 1208 (1249)
T 3sfz_A 1135 FSLDGILLATGDDNGEIRIWNVSDGQLLHS------CAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVATG 1208 (1249)
T ss_dssp ECSSSSEEEEEETTSCCCEEESSSSCCCCC------CCCCC-------CCSCCCEEEECTTSSCEEEESSSEEEBCSSSC
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCceEEE------eccccccccccccCceEEEEEECCCCCEEEECCCeEEEEECCCC
Confidence 4433 333346788888886543221111 0111100 1112235555554444444455588888864332
Q ss_pred CCCCCCCCCCCCceecceEcCccCCCCEE--EEEecCCeEEEEEcCCCEEEEeC
Q 011336 405 GSLGFPDRGVSDKVLRPRILDSLRAHHVS--QISTGLYHTVVVTDRGRLFGFGD 456 (488)
Q Consensus 405 gqLG~~~~~~~~~~~~P~~v~~~~~~~v~--~v~~G~~ht~~l~~~G~v~~wG~ 456 (488)
..+..-. .....|. .++..+...+....+|.|+.|--
T Consensus 1209 ~~~~~~~---------------~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1209 DSSQTFY---------------TNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp BCCCCCC---------------CSSCCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred ceeeeee---------------ccCCcccEEEECCCCCEEEEecCCcEEEEEee
Confidence 2111100 0011222 23333445566778889988843
No 54
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=67.74 E-value=1.2e+02 Score=31.69 Aligned_cols=157 Identities=13% Similarity=0.093 Sum_probs=83.0
Q ss_pred CCEEEEEeC----CceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEec----CCeeEEEEeC
Q 011336 163 AHVVQVSAS----ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG----LNFTGFLTIR 234 (488)
Q Consensus 163 ~~i~~i~~G----~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G----~~h~~~lt~~ 234 (488)
..|..++.. ....+.-..||.|+.|-.... ...+..........|..++.. ....+.-+.+
T Consensus 54 ~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~-----------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d 122 (753)
T 3jro_A 54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG-----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122 (753)
T ss_dssp SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT-----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC-----------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCC
Confidence 367777764 445566678999999964331 000111111123356666654 3455666788
Q ss_pred CcEEEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC---------------CeEEEEEcCCcEEEecCCCCC
Q 011336 235 GHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP---------------SYMLAVTGNGVVYSFGSGSNF 299 (488)
Q Consensus 235 G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~---------------~~~~~lt~~G~v~~wG~n~~g 299 (488)
|.|..|-...... .....+... ...|..++... ...+.-..+|.|..|-.....
T Consensus 123 g~I~vwdl~~~~~---------~~~~~~~~~--~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~ 191 (753)
T 3jro_A 123 GKVSVVEFKENGT---------TSPIIIDAH--AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 191 (753)
T ss_dssp SEEEEEECCSSSC---------CCCEEEECC--SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT
T ss_pred CcEEEEEeecCCC---------cceeEeecC--CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc
Confidence 9999995432211 111122211 14566666543 455666778999988543210
Q ss_pred ccCCCCCCCCcCceeeeecccCCeeEEEEEeCCC-----eEEEEeCCCcEEEEecCC
Q 011336 300 CLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE-----HVVALDSSGYVYTWGKGY 351 (488)
Q Consensus 300 qlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~-----h~~~lt~~G~vy~wG~n~ 351 (488)
.....+..+......|..++.... ..+.-..+|.|..|-...
T Consensus 192 ----------~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 192 ----------QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp ----------TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred ----------ccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 011122222222345777766544 344457889999997543
No 55
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=67.37 E-value=74 Score=28.94 Aligned_cols=193 Identities=9% Similarity=-0.012 Sum_probs=94.5
Q ss_pred CceEEEecCc----eeEee--eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEE--------eCCceeEE
Q 011336 112 GNMQITTGRY----HTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVS--------ASENHAAF 177 (488)
Q Consensus 112 ~i~~i~~G~~----h~~~l--~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~--------~G~~~~~~ 177 (488)
.|..++.... ..++. .+|.|..|-.....+. ...+. .....|..+. ......+.
T Consensus 67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~~~s~~~~~l~~ 134 (357)
T 3i2n_A 67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMP-----------VYSVK-GHKEIINAIDGIGGLGIGEGAPEIVT 134 (357)
T ss_dssp CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSC-----------SEEEC-CCSSCEEEEEEESGGGCC-CCCEEEE
T ss_pred cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCcc-----------EEEEE-ecccceEEEeeccccccCCCccEEEE
Confidence 4556665543 33444 6888999865432100 00111 1222455553 22345555
Q ss_pred EEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCC---CCCeEEEE------ecCCeeEEEEeCCcEEEEECCCCCcc
Q 011336 178 VLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALK---GVPCKQVT------AGLNFTGFLTIRGHVHTCGSNTHGQL 248 (488)
Q Consensus 178 lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~---~~~i~~V~------~G~~h~~~lt~~G~vy~wG~n~~gql 248 (488)
-..||.|..|-...... ....+.... ...|..++ ......+.-..+|.|+.|-....
T Consensus 135 ~~~d~~i~vwd~~~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--- 200 (357)
T 3i2n_A 135 GSRDGTVKVWDPRQKDD-----------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM--- 200 (357)
T ss_dssp EETTSCEEEECTTSCSS-----------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT---
T ss_pred EeCCCeEEEEeCCCCCC-----------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC---
Confidence 56789999996544110 111111111 22455555 23344455567799999953221
Q ss_pred CCCCCCCCCCceeecCCCCCCCEEEEEeC-----CCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCe
Q 011336 249 GHGDTLDRPTPKSIAPLEEVGSVVQIAAG-----PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGI 323 (488)
Q Consensus 249 G~~~~~~~~~p~~i~~~~~~~~i~~i~~G-----~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~ 323 (488)
.+...... ...|..++.. ....++-..+|.|+.|-...... ........+.....
T Consensus 201 ---------~~~~~~~~--~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------~~~~~~~~~~~~~~ 260 (357)
T 3i2n_A 201 ---------ALRWETNI--KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHP---------TKGFASVSEKAHKS 260 (357)
T ss_dssp ---------EEEEEEEC--SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEET---------TTEEEEEEEECCSS
T ss_pred ---------ceeeecCC--CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCc---------ccceeeeccCCCcC
Confidence 01111111 2467777664 35566667789999886432110 00011101112233
Q ss_pred eEEEEEeCCCe---EEEEeCCCcEEEEecC
Q 011336 324 HVVRVSAGDEH---VVALDSSGYVYTWGKG 350 (488)
Q Consensus 324 ~i~~i~~g~~h---~~~lt~~G~vy~wG~n 350 (488)
.|..++..... .+.-..+|.|+.|-..
T Consensus 261 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 261 TVWQVRHLPQNRELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp CEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence 56666665543 3334688999998754
No 56
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=66.51 E-value=83 Score=29.22 Aligned_cols=300 Identities=8% Similarity=-0.028 Sum_probs=137.4
Q ss_pred CceEEEecC--ceeEee--eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeC----CCCCCEEEEEeC---CceeEEEEc
Q 011336 112 GNMQITTGR--YHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINF----PSAAHVVQVSAS---ENHAAFVLQ 180 (488)
Q Consensus 112 ~i~~i~~G~--~h~~~l--~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~----~~~~~i~~i~~G---~~~~~~lt~ 180 (488)
.|..++.-. ...++. .||.|..|-.........-. ......... .....|..++.. ....+.-..
T Consensus 45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 120 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYT----CKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF 120 (408)
T ss_dssp CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEE----ECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEe----ccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence 455565543 223333 78999999655322211100 000011111 123367777763 345566677
Q ss_pred CCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecC-----CeeEEEEeCCcEEEEECCCCCccCCCCCCC
Q 011336 181 SGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL-----NFTGFLTIRGHVHTCGSNTHGQLGHGDTLD 255 (488)
Q Consensus 181 ~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~-----~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~ 255 (488)
+|.|..|-...... . ..+.. ...+..+.... ...++-..+|.|+.|-.....
T Consensus 121 d~~i~iwd~~~~~~---------~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--------- 177 (408)
T 4a11_B 121 DKTLKVWDTNTLQT---------A---DVFNF--EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS--------- 177 (408)
T ss_dssp TSEEEEEETTTTEE---------E---EEEEC--SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC---------
T ss_pred CCeEEEeeCCCCcc---------c---eeccC--CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc---------
Confidence 99999996544110 0 01111 12234443322 244555778999999543211
Q ss_pred CCCceeecCCCCCCCEEEEEeCCC---eEEEEEcCCcEEEecCCCCCccCC-CCCCC-CcCceeeeecccCCeeEEEEEe
Q 011336 256 RPTPKSIAPLEEVGSVVQIAAGPS---YMLAVTGNGVVYSFGSGSNFCLGH-GEQHD-ELQPRAIQTFRRKGIHVVRVSA 330 (488)
Q Consensus 256 ~~~p~~i~~~~~~~~i~~i~~G~~---~~~~lt~~G~v~~wG~n~~gqlG~-~~~~~-~~~p~~i~~~~~~~~~i~~i~~ 330 (488)
....+... ...|..++.... ..+.-..+|.|+.|-.......-. -.... ................|..++.
T Consensus 178 --~~~~~~~~--~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 178 --CSHILQGH--RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp --CCEEECCC--CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred --eeeeecCC--CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence 11122211 146777766533 245667889999997643221000 00000 0000000001112235666665
Q ss_pred CCC--eEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCC
Q 011336 331 GDE--HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLG 408 (488)
Q Consensus 331 g~~--h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~t~~lt~~G~vy~wG~n~~gqLG 408 (488)
..+ +.+....+|.|..|-......+-.-... ..........+..........++...+|.|+.|-......
T Consensus 254 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-- 326 (408)
T 4a11_B 254 TSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGK-----VCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ-- 326 (408)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCBCCCCCCC-----CCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCE--
T ss_pred cCCCCEEEEecCCCeEEEEECCCCccceecccc-----ccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcc--
Confidence 443 4555678999999976542221110000 0000011111222223344556667789999997432110
Q ss_pred CCCCCCCCceecceEcCccCCCCEEEEEecC--CeEEEEEcCCCEEEEeCCCCCCC
Q 011336 409 FPDRGVSDKVLRPRILDSLRAHHVSQISTGL--YHTVVVTDRGRLFGFGDNERAQL 462 (488)
Q Consensus 409 ~~~~~~~~~~~~P~~v~~~~~~~v~~v~~G~--~ht~~l~~~G~v~~wG~n~~GqL 462 (488)
...+.. ....|..++... .+.+.-..||.|..|=....-++
T Consensus 327 ------------~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 327 ------------ITMLKG-HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp ------------EEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC----
T ss_pred ------------eeeecc-CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCcc
Confidence 111111 123566665543 44555667999999977664433
No 57
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=65.38 E-value=86 Score=29.00 Aligned_cols=220 Identities=10% Similarity=0.083 Sum_probs=116.3
Q ss_pred EEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEec-----CCeeEEEEeCCcEEEEEC
Q 011336 168 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG-----LNFTGFLTIRGHVHTCGS 242 (488)
Q Consensus 168 i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G-----~~h~~~lt~~G~vy~wG~ 242 (488)
++.+..+.+++|+.|++|..-...--..+....+.+ ....+...++.+|+.+... ..+.+++|++|.++-.-.
T Consensus 54 ~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~--i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l 131 (312)
T 1suu_A 54 CVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQN--ISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFES 131 (312)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCC-------CB--GGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred EECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcC--hhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEH
Confidence 455678899999999999986544222222111111 1112233346677777654 345788899999998865
Q ss_pred CCCCccCCCCCCCCCCceeecCCCCCCCEEEEEe--CCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeeccc
Q 011336 243 NTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAA--GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRR 320 (488)
Q Consensus 243 n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~--G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~ 320 (488)
.++-.. ...-.....+.+...++.+.. +..+.+++|++|.+..+-..+.-..|... .-++...+.
T Consensus 132 ~~~~~~-------r~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~-----~Gv~~i~L~- 198 (312)
T 1suu_A 132 TDFKAV-------KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGT-----QGVCGMKLK- 198 (312)
T ss_dssp GGGCC-----------CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTB-----CCEECCCCC-
T ss_pred HHhhcc-------CCCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCC-----CCeEeEEeC-
Confidence 443110 011122223333456666554 46789999999999888765543333211 112222222
Q ss_pred CCeeEEEEEe--CCCeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEE--EeeCCeEEEEEcCCcE
Q 011336 321 KGIHVVRVSA--GDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQV--CARKRKTFVLVDTGSV 396 (488)
Q Consensus 321 ~~~~i~~i~~--g~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v--~~G~~~t~~lt~~G~v 396 (488)
.+..|+.+.. ...+.++++++|.+...-...+-..+.+..-.. ... +.......++.+ .......++++++|.+
T Consensus 199 ~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kGv~-~~~-~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~ 276 (312)
T 1suu_A 199 EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYT-SYK-KSDKKAGSVVDAIAVSEDDEILLVSKRSKA 276 (312)
T ss_dssp TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCEE-CSC-TTCTTTCSEEEEEEECTTCEEEEEETTCEE
T ss_pred CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCCEE-eeE-ccCCCCCeEEEEEEeCCCCEEEEEeCCCeE
Confidence 2334555433 345677889999887777666544443322111 010 000111234332 2355667788888877
Q ss_pred EEEEcCCC
Q 011336 397 YGFGWMGF 404 (488)
Q Consensus 397 y~wG~n~~ 404 (488)
.-.-.++.
T Consensus 277 ~r~~~~~i 284 (312)
T 1suu_A 277 LRTVAGKV 284 (312)
T ss_dssp EEEEGGGS
T ss_pred EEEEcccC
Confidence 66554443
No 58
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=65.08 E-value=90 Score=29.12 Aligned_cols=235 Identities=12% Similarity=0.068 Sum_probs=108.5
Q ss_pred CceEEEecCce-eEee--eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeC--CceeEEEEcCCcEEE
Q 011336 112 GNMQITTGRYH-TLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS--ENHAAFVLQSGQVFT 186 (488)
Q Consensus 112 ~i~~i~~G~~h-~~~l--~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G--~~~~~~lt~~G~vy~ 186 (488)
.|..++..... .++. .+|.|+.|- ..++ ....+. .....|..++.. ....+....+|.|+.
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~--~~~~-----------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 175 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWN--KTGA-----------LLNVLN-FHRAPIVSVKWNKDGTHIISMDVENVTIL 175 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEE--TTSC-----------EEEEEC-CCCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEe--CCCC-----------eeeecc-CCCccEEEEEECCCCCEEEEEecCCeEEE
Confidence 45566554332 2333 788899885 1111 111111 123357777664 344556667899999
Q ss_pred EeCCCCCcccCCCCCCceeCCEEec----cCCCCCeEEEEe-cCCeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCcee
Q 011336 187 CGDNSSFCCGHRDTNRPIFRPRLVE----ALKGVPCKQVTA-GLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKS 261 (488)
Q Consensus 187 wG~n~~gqlG~~~~~~~~~~p~~v~----~~~~~~i~~V~~-G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~ 261 (488)
|-......+..-.... ..+..+. ......+..++. .....++...+|.|+.|-.... .....
T Consensus 176 wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~-----------~~~~~ 242 (425)
T 1r5m_A 176 WNVISGTVMQHFELKE--TGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK-----------TPTGK 242 (425)
T ss_dssp EETTTTEEEEEECCC-----------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCS-----------SCSEE
T ss_pred EECCCCcEEEEeeccc--cCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCC-----------ceeee
Confidence 9765421111000000 0000000 000000122211 1234555567888988854321 11111
Q ss_pred ecCCCCCCCEEEEEeC--CCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCCC-eEEEE
Q 011336 262 IAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE-HVVAL 338 (488)
Q Consensus 262 i~~~~~~~~i~~i~~G--~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~-h~~~l 338 (488)
+... ...|..++.. ....+.-..+|.|+.|-.... .+ +..+......|..++.... ..++.
T Consensus 243 ~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------------~~--~~~~~~~~~~i~~~~~~~~~~l~~~ 306 (425)
T 1r5m_A 243 LIGH--HGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG------------NS--QNCFYGHSQSIVSASWVGDDKVISC 306 (425)
T ss_dssp ECCC--SSCEEEEEEETTTTEEEEEETTSCEEEECSSSB------------SC--SEEECCCSSCEEEEEEETTTEEEEE
T ss_pred eccC--CCceEEEEECCCCCEEEEEcCCCEEEEEECCCC------------cc--ceEecCCCccEEEEEECCCCEEEEE
Confidence 2111 1356555543 345666667889999864321 11 1111112224555554433 45556
Q ss_pred eCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEee--CCeEEEEEcCCcEEEEEc
Q 011336 339 DSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR--KRKTFVLVDTGSVYGFGW 401 (488)
Q Consensus 339 t~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G--~~~t~~lt~~G~vy~wG~ 401 (488)
..+|.|+.|-..... +..........|..++.. ....++-..+|.|+.|-.
T Consensus 307 ~~d~~i~i~d~~~~~------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~ 359 (425)
T 1r5m_A 307 SMDGSVRLWSLKQNT------------LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDL 359 (425)
T ss_dssp ETTSEEEEEETTTTE------------EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred eCCCcEEEEECCCCc------------EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 788999998653210 111111122346555554 334455567889999874
No 59
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=63.46 E-value=99 Score=29.03 Aligned_cols=99 Identities=10% Similarity=0.027 Sum_probs=51.6
Q ss_pred CceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEec--CCeeEEEEeCCcEEEEECCCCCccC
Q 011336 172 ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHTCGSNTHGQLG 249 (488)
Q Consensus 172 ~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G--~~h~~~lt~~G~vy~wG~n~~gqlG 249 (488)
+...+.-..+|.|..|-... + .+..........|..++.. ..+.+.-..||.|+.|-.....
T Consensus 109 ~~~l~~~~~dg~i~iwd~~~-~------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~--- 172 (420)
T 3vl1_A 109 MRRFILGTTEGDIKVLDSNF-N------------LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS--- 172 (420)
T ss_dssp SCEEEEEETTSCEEEECTTS-C------------EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---
T ss_pred CCEEEEEECCCCEEEEeCCC-c------------ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc---
Confidence 34445556788899885332 1 1111111122346666553 3344555678999999543211
Q ss_pred CCCCCCCCCceeecCCCCCCCEEEEEeC--CCeEEEEEcCCcEEEecCC
Q 011336 250 HGDTLDRPTPKSIAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSG 296 (488)
Q Consensus 250 ~~~~~~~~~p~~i~~~~~~~~i~~i~~G--~~~~~~lt~~G~v~~wG~n 296 (488)
....+... ...|..++.. ....+.-..+|.|..|-..
T Consensus 173 --------~~~~~~~h--~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 211 (420)
T 3vl1_A 173 --------NPRTLIGH--RATVTDIAIIDRGRNVLSASLDGTIRLWECG 211 (420)
T ss_dssp --------CCEEEECC--SSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred --------CceEEcCC--CCcEEEEEEcCCCCEEEEEcCCCcEEEeECC
Confidence 11222221 1456666553 3455566678889888653
No 60
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=63.44 E-value=88 Score=28.44 Aligned_cols=192 Identities=8% Similarity=-0.078 Sum_probs=99.5
Q ss_pred CCceEEEecCc----eeEee--eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeC--CceeEEEEcCC
Q 011336 111 AGNMQITTGRY----HTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS--ENHAAFVLQSG 182 (488)
Q Consensus 111 ~~i~~i~~G~~----h~~~l--~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G--~~~~~~lt~~G 182 (488)
..|..++.-.. ..++. .||.|..|-....++. ....+. .....|..++.. +...+.-..||
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~----------~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg 108 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT----------IPKAQQ-MHTGPVLDVCWSDDGSKVFTASCDK 108 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE----------EEEEEE-ECSSCEEEEEECTTSSEEEEEETTS
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce----------eEEEec-cccCCEEEEEECcCCCEEEEEcCCC
Confidence 34666666654 34444 7899999965432210 101111 123357776664 33455566789
Q ss_pred cEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEe--cCC--eeEEEEeCCcEEEEECCCCCccCCCCCCCCCC
Q 011336 183 QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLN--FTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPT 258 (488)
Q Consensus 183 ~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~--G~~--h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~ 258 (488)
.|..|-..... +..... ....|..++. ... +.+.-..+|.|+.|=.... ..
T Consensus 109 ~v~iwd~~~~~-------------~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----------~~ 163 (368)
T 3mmy_A 109 TAKMWDLSSNQ-------------AIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS-----------NP 163 (368)
T ss_dssp EEEEEETTTTE-------------EEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS-----------SC
T ss_pred cEEEEEcCCCC-------------ceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC-----------cE
Confidence 99999654411 011111 2234666664 222 3444466899999932210 11
Q ss_pred ceeecCCCCCCCEEEEEeCCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCCCe----
Q 011336 259 PKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEH---- 334 (488)
Q Consensus 259 p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h---- 334 (488)
...+.. ...+..+..-....++.+.++.+..|-...... ....+.........+..+......
T Consensus 164 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (368)
T 3mmy_A 164 MMVLQL---PERCYCADVIYPMAVVATAERGLIVYQLENQPS----------EFRRIESPLKHQHRCVAIFKDKQNKPTG 230 (368)
T ss_dssp SEEEEC---SSCEEEEEEETTEEEEEEGGGCEEEEECSSSCE----------EEEECCCSCSSCEEEEEEEECTTSCEEE
T ss_pred EEEEec---CCCceEEEecCCeeEEEeCCCcEEEEEeccccc----------hhhhccccccCCCceEEEcccCCCCCCe
Confidence 111211 145666766677888888999999886543211 001111111122234444444433
Q ss_pred EEEEeCCCcEEEEecCC
Q 011336 335 VVALDSSGYVYTWGKGY 351 (488)
Q Consensus 335 ~~~lt~~G~vy~wG~n~ 351 (488)
.++-..+|.|..|-...
T Consensus 231 ~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 231 FALGSIEGRVAIHYINP 247 (368)
T ss_dssp EEEEETTSEEEEEESSC
T ss_pred EEEecCCCcEEEEecCC
Confidence 55567899888887643
No 61
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=63.10 E-value=97 Score=28.79 Aligned_cols=250 Identities=9% Similarity=-0.012 Sum_probs=114.3
Q ss_pred CceEEEecCceeEee-eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeCC---------ceeEEEEcC
Q 011336 112 GNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE---------NHAAFVLQS 181 (488)
Q Consensus 112 ~i~~i~~G~~h~~~l-~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G~---------~~~~~lt~~ 181 (488)
.|..++.-....+.- .||.|+.|-...... .........+. .....|..++... ...+.-..+
T Consensus 18 ~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~------~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d 90 (397)
T 1sq9_A 18 DIFSVSACNSFTVSCSGDGYLKVWDNKLLDN------ENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTSFS 90 (397)
T ss_dssp CEEEEEECSSEEEEEETTSEEEEEESBCCTT------CCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred CeEEEEecCCeEEEEcCCCEEEEEECCCccc------ccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEcCC
Confidence 456666655322223 799999997653210 00000111121 2233566665543 344455678
Q ss_pred CcEEEEeCCCCCcccCCCCCCceeCCEEeccCC----CCCeEEEEec------CCe-eEEEEeCCcEEEEECCCCCccCC
Q 011336 182 GQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALK----GVPCKQVTAG------LNF-TGFLTIRGHVHTCGSNTHGQLGH 250 (488)
Q Consensus 182 G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~----~~~i~~V~~G------~~h-~~~lt~~G~vy~wG~n~~gqlG~ 250 (488)
|.|+.|-...... . .......+.... ...|..++.. ..+ .+.-..+|.|+.|-....-.-+.
T Consensus 91 g~i~iw~~~~~~~----~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 91 GDLLFYRITREDE----T---KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp SCEEEEEEEECTT----T---CCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred CCEEEEEccCCcc----c---ccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 9999996443110 0 000012222221 2356666554 344 45556789999995432000000
Q ss_pred CCCCCCCCce-eecC-----CCCCCCEEEEEeCCC-eEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeeccc---
Q 011336 251 GDTLDRPTPK-SIAP-----LEEVGSVVQIAAGPS-YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRR--- 320 (488)
Q Consensus 251 ~~~~~~~~p~-~i~~-----~~~~~~i~~i~~G~~-~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~--- 320 (488)
+. .....|. .+.. ......|..++...+ ..++-..+|.|+.|-.... ..+..+..
T Consensus 164 ~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~--------------~~~~~~~~~~~ 228 (397)
T 1sq9_A 164 SL-TLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTL--------------RPLYNFESQHS 228 (397)
T ss_dssp HT-TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTT--------------EEEEEEECCC-
T ss_pred cc-eeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCC--------------ceeEEEecccc
Confidence 00 0111111 2211 111135555655433 4444556788888865321 11222221
Q ss_pred C---CeeEEEEEeC--CCeEEEEeCC---CcEEEEecCCCCCCCCCCCCCcccceeecCC------------CCCcEEEE
Q 011336 321 K---GIHVVRVSAG--DEHVVALDSS---GYVYTWGKGYCGALGHGDEIDKTLPEPLSSL------------KSHLAVQV 380 (488)
Q Consensus 321 ~---~~~i~~i~~g--~~h~~~lt~~---G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~------------~~~~i~~v 380 (488)
. ...|..++.. ..+.++-..+ |.|+.|-...... ...+... ....|..+
T Consensus 229 h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~v~~~ 297 (397)
T 1sq9_A 229 MINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER-----------IGSLSVPTHSSQASLGEFAHSSWVMSL 297 (397)
T ss_dssp --CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE-----------EEEECBC--------CCBSBSSCEEEE
T ss_pred ccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc-----------cceeccCcccccccccccccCCcEEEE
Confidence 1 3356666553 3344444566 8888887542111 0111110 23346666
Q ss_pred Eee--CCeEEEEEcCCcEEEEEc
Q 011336 381 CAR--KRKTFVLVDTGSVYGFGW 401 (488)
Q Consensus 381 ~~G--~~~t~~lt~~G~vy~wG~ 401 (488)
+.. ....+.-..||.|+.|-.
T Consensus 298 ~~~~~~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 298 SFNDSGETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp EECSSSSEEEEEETTSEEEEEET
T ss_pred EECCCCCEEEEEeCCCeEEEEEc
Confidence 654 334445567889999874
No 62
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=63.10 E-value=88 Score=28.28 Aligned_cols=204 Identities=7% Similarity=-0.095 Sum_probs=102.4
Q ss_pred CEEEEEeCC--ceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEec--CC-eeEEEEeCCcEE
Q 011336 164 HVVQVSASE--NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LN-FTGFLTIRGHVH 238 (488)
Q Consensus 164 ~i~~i~~G~--~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G--~~-h~~~lt~~G~vy 238 (488)
.|..++... ...+.-..||.|+.|-..... ....+..... ....|..++.. .. ..+.-..+|.|+
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~---------~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQA---------KNVDLLQSLR-YKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTT---------TEEEEEEEEE-CSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC---------ccccceeeee-cCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 566665543 344445678999988654311 0011111111 12345555543 33 555567789999
Q ss_pred EEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeC-CCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeee
Q 011336 239 TCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG-PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQT 317 (488)
Q Consensus 239 ~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G-~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~ 317 (488)
.|-....++ ...+........|..++.. ....+.-..+|.|+.|-...... ........+ +..
T Consensus 83 ~wd~~~~~~-----------~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~--~~~ 146 (342)
T 1yfq_A 83 KVDLIGSPS-----------FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD---GVIAVKNLN--SNN 146 (342)
T ss_dssp EECSSSSSS-----------EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT---BCEEEEESC--SSS
T ss_pred EEEeccCCc-----------eEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc---ccccccCCe--eeE
Confidence 994311111 1222220012456666544 56667778899999996432100 000000000 111
Q ss_pred cccCCeeEEEEEeCCCeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEee---CCeEEEEEcCC
Q 011336 318 FRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR---KRKTFVLVDTG 394 (488)
Q Consensus 318 ~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G---~~~t~~lt~~G 394 (488)
+. ....|..++......++.+.+|.|+.|-....+. .............|..++.. ....++-..+|
T Consensus 147 ~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---------~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg 216 (342)
T 1yfq_A 147 TK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED---------DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG 216 (342)
T ss_dssp SS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT---------CCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS
T ss_pred Ee-eCCceEEEEecCCcEEEEeCCCeEEEEECCcccc---------ccceeeecCCCCceeEEEECCCCCCEEEEEecCC
Confidence 11 1235777777777766678899999997643111 01111212223345555554 34555566789
Q ss_pred cEEEEEcCC
Q 011336 395 SVYGFGWMG 403 (488)
Q Consensus 395 ~vy~wG~n~ 403 (488)
.+..|-...
T Consensus 217 ~i~i~~~~~ 225 (342)
T 1yfq_A 217 RVAVEFFDD 225 (342)
T ss_dssp EEEEEECCT
T ss_pred cEEEEEEcC
Confidence 999887544
No 63
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=60.33 E-value=1.2e+02 Score=29.04 Aligned_cols=98 Identities=7% Similarity=0.073 Sum_probs=58.1
Q ss_pred eEEEEecCCeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCeEEEEEcCCcEEEecCCC
Q 011336 218 CKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGS 297 (488)
Q Consensus 218 i~~V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~wG~n~ 297 (488)
|.+|+. ....+++.++|.|..|=-....+ ...+.... ..+.++.+-....++++.+|.|+.|-...
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~-----------~~~~~~~~--~~v~~i~~~~p~~av~~~dG~L~v~dl~~ 155 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSE-----------FRTVTSFE--KPVFQLKNVNNTLVILNSVNDLSALDLRT 155 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTC-----------EEEEEECS--SCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhc-----------cCccceee--cceeeEEecCCCEEEEECCCCEEEEEccC
Confidence 889999 77777778899999985432221 11111221 34667666666688889999999995432
Q ss_pred CCccCCCCCCCCcCceeeeecccCCeeEEEEEeCCCeEEEEeCCCcEEEE
Q 011336 298 NFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTW 347 (488)
Q Consensus 298 ~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~w 347 (488)
.. + ..+. ..|..|+-...-.++...+|++..|
T Consensus 156 ~~-~-----------~~~~------~~Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 156 KS-T-----------KQLA------QNVTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp CC-E-----------EEEE------ESEEEEEECSSEEEEEETTSCEEEE
T ss_pred Cc-c-----------cccc------CCceEEEEcCCceEEEEcCCcEEEE
Confidence 11 0 1111 1466665555444445566666555
No 64
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=60.27 E-value=91 Score=27.55 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=10.8
Q ss_pred eEEEEeCCCcEEEEec
Q 011336 334 HVVALDSSGYVYTWGK 349 (488)
Q Consensus 334 h~~~lt~~G~vy~wG~ 349 (488)
..++++.+|++|.-..
T Consensus 210 ~~i~~d~~G~l~v~~~ 225 (286)
T 1q7f_A 210 IGVGINSNGEILIADN 225 (286)
T ss_dssp EEEEECTTCCEEEEEC
T ss_pred cEEEECCCCCEEEEeC
Confidence 4566777777777654
No 65
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=59.75 E-value=1.7e+02 Score=30.50 Aligned_cols=230 Identities=15% Similarity=0.063 Sum_probs=107.7
Q ss_pred CEEEEEeCC--ceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEE--ecCCeeEEEEeCCcEEE
Q 011336 164 HVVQVSASE--NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVT--AGLNFTGFLTIRGHVHT 239 (488)
Q Consensus 164 ~i~~i~~G~--~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~--~G~~h~~~lt~~G~vy~ 239 (488)
.|..++... ...++-..+|.|..|-...... ...+.. ....|..++ ......++-..+|.|..
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~------------~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE------------VRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRV 81 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEE------------EEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCce------------EEEEec-CCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 455555443 3333445688898886433110 011111 122344444 33444555677899999
Q ss_pred EECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC--CeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeee
Q 011336 240 CGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQT 317 (488)
Q Consensus 240 wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~--~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~ 317 (488)
|-..... ....+... ...|..++... .+.+.-..+|.|..|-..... .....
T Consensus 82 w~~~~~~-----------~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-------------~~~~~ 135 (814)
T 3mkq_A 82 FNYNTGE-----------KVVDFEAH--PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-------------ALEQT 135 (814)
T ss_dssp EETTTCC-----------EEEEEECC--SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS-------------EEEEE
T ss_pred EECCCCc-----------EEEEEecC--CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc-------------eEEEE
Confidence 9543211 11112111 14566666543 345556678888888542210 11111
Q ss_pred cccCCeeEEEEEeCC---CeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEe----eCCeEEEE
Q 011336 318 FRRKGIHVVRVSAGD---EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCA----RKRKTFVL 390 (488)
Q Consensus 318 ~~~~~~~i~~i~~g~---~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~----G~~~t~~l 390 (488)
+......|..++... ...+.-..+|.|+.|-..... ....+.......+..++. .....++-
T Consensus 136 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 204 (814)
T 3mkq_A 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----------PNFTLTTGQERGVNYVDYYPLPDKPYMITA 204 (814)
T ss_dssp EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-----------CSEEEECCCTTCCCEEEECCSTTCCEEEEE
T ss_pred EcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------ceeEEecCCCCCEEEEEEEECCCCCEEEEE
Confidence 221223466655543 234445788999999753211 011111111122333333 23344455
Q ss_pred EcCCcEEEEEcCCCCCCCCCCCCCCCceecceEcCccCCCCEEEEEecCC--eEEEEEcCCCEEEEeCCC
Q 011336 391 VDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLY--HTVVVTDRGRLFGFGDNE 458 (488)
Q Consensus 391 t~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~v~~G~~--ht~~l~~~G~v~~wG~n~ 458 (488)
..+|.|+.|-.... .....+.. ....|..++.... ..+....||.|..|-...
T Consensus 205 ~~dg~i~~~d~~~~--------------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 205 SDDLTIKIWDYQTK--------------SCVATLEG-HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp CTTSEEEEEETTTT--------------EEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred eCCCEEEEEECCCC--------------cEEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 57888998863210 01111111 1234555554432 344455678888885543
No 66
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=59.54 E-value=1.2e+02 Score=28.73 Aligned_cols=111 Identities=6% Similarity=-0.006 Sum_probs=54.6
Q ss_pred CCEEEEEe----CCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccC-CCCCeEEEEec--CCeeEEEEeCC
Q 011336 163 AHVVQVSA----SENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEAL-KGVPCKQVTAG--LNFTGFLTIRG 235 (488)
Q Consensus 163 ~~i~~i~~----G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~-~~~~i~~V~~G--~~h~~~lt~~G 235 (488)
..+..+.. .....+.-+.||.|+.|-..... . ...+... ....|..++.. ....+.-+.+|
T Consensus 169 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---------~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg 236 (437)
T 3gre_A 169 EYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE---------R---LQIIENSPRHGAVSSICIDEECCVLILGTTRG 236 (437)
T ss_dssp CCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC---------E---EEEEECCGGGCCEEEEEECTTSCEEEEEETTS
T ss_pred cCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe---------e---eEEEccCCCCCceEEEEECCCCCEEEEEcCCC
Confidence 35555552 24455666778999999654311 0 0111110 12356666653 33444456789
Q ss_pred cEEEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCC------eEEEEEcCCcEEEecCCC
Q 011336 236 HVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPS------YMLAVTGNGVVYSFGSGS 297 (488)
Q Consensus 236 ~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~------~~~~lt~~G~v~~wG~n~ 297 (488)
.|..|-... + .+.....+.....|..++.... ..+.-..+|.|..|-...
T Consensus 237 ~i~iwd~~~-~-----------~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 292 (437)
T 3gre_A 237 IIDIWDIRF-N-----------VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK 292 (437)
T ss_dssp CEEEEETTT-T-----------EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT
T ss_pred eEEEEEcCC-c-----------cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC
Confidence 999994322 1 1111111111235666643321 333444678888886643
No 67
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=59.40 E-value=1.1e+02 Score=28.38 Aligned_cols=227 Identities=11% Similarity=0.059 Sum_probs=118.1
Q ss_pred EEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecC-----CeeEEEEeCCcEEEEE
Q 011336 167 QVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL-----NFTGFLTIRGHVHTCG 241 (488)
Q Consensus 167 ~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~-----~h~~~lt~~G~vy~wG 241 (488)
.++.+..+.+++|+.|++|..-...--..+....+.+ ....+...++.+|+.+..-. .+.+++|++|.+.-.-
T Consensus 45 ~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~--i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~ 122 (323)
T 1wp5_A 45 LEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH--IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTE 122 (323)
T ss_dssp EEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE--GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEE
T ss_pred EEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC--hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeE
Confidence 3556778899999999999987655333332222111 11122233456677664432 3578889999887664
Q ss_pred CCCCCccCCCCCCCCCCceeecCCCCCCCEEEE--EeCCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecc
Q 011336 242 SNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQI--AAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFR 319 (488)
Q Consensus 242 ~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i--~~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~ 319 (488)
..++-... .........+.+...++.+ ..+.++.+++|++|.++.+-.++-...|. ....++...+.
T Consensus 123 l~e~~~~~------r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR-----~a~GV~~i~L~ 191 (323)
T 1wp5_A 123 LKHYKAQR------YSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGV-----RAAGVKGMNLK 191 (323)
T ss_dssp GGGGCCSC------CSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCS-----SCCCEECCCCC
T ss_pred HHHhhhcc------ccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCC-----CCcCEEEEEeC
Confidence 33321100 0112222223233455543 33678899999999999887765443333 12223333332
Q ss_pred cCCeeEEEEEe--CCC-eEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEE--EeeCCeEEEEEcCC
Q 011336 320 RKGIHVVRVSA--GDE-HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQV--CARKRKTFVLVDTG 394 (488)
Q Consensus 320 ~~~~~i~~i~~--g~~-h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v--~~G~~~t~~lt~~G 394 (488)
.+..|+.+.. ... ..+.+|++|.....-...+-..+.+... ...+...+. .+..++.+ ..+....++++++|
T Consensus 192 -~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kG-v~~~~~~~~-~~~~l~~~~~v~~~~~i~~it~~g 268 (323)
T 1wp5_A 192 -EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRG-VVILRELKA-NPHRISGFVVAQDSDTIYLQTEKS 268 (323)
T ss_dssp -TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCC-EECSCCCSS-SCCCEEEEEEECTTCEEEEEETTS
T ss_pred -CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCC-EECeeecCC-CCceEEEEEEeCCCCeEEEEeCCC
Confidence 2334555432 122 5666788886554443333222221110 111111111 12234432 34567888999999
Q ss_pred cEEEEEcCCCCCCCC
Q 011336 395 SVYGFGWMGFGSLGF 409 (488)
Q Consensus 395 ~vy~wG~n~~gqLG~ 409 (488)
.+.-.--++....|.
T Consensus 269 ~~ir~~~~~i~~~~R 283 (323)
T 1wp5_A 269 FIETIKVGDIRFSDR 283 (323)
T ss_dssp CEEEEEGGGSCBCCS
T ss_pred eEEEEEhhhcCccCc
Confidence 998776655544443
No 68
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=58.83 E-value=1e+02 Score=27.64 Aligned_cols=111 Identities=13% Similarity=0.069 Sum_probs=51.7
Q ss_pred CCEEEEEeC-CceeEEEEcCCc-EEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecCCeeEEEEeCCcE-EE
Q 011336 163 AHVVQVSAS-ENHAAFVLQSGQ-VFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHV-HT 239 (488)
Q Consensus 163 ~~i~~i~~G-~~~~~~lt~~G~-vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~lt~~G~v-y~ 239 (488)
.++.-..++ ....++++.+|+ ++.++.... . . .....|..+....+-.+.-...+.....+++.+|++ |.
T Consensus 88 G~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~----~--~-~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~ 160 (276)
T 3no2_A 88 GNALVAWCGHPSTILEVNMKGEVLSKTEFETG----I--E-RPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNS 160 (276)
T ss_dssp SCEEEEEESTTEEEEEECTTSCEEEEEEECCS----C--S-SGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEE
T ss_pred CCEEEEecCCCCEEEEEeCCCCEEEEEeccCC----C--C-cccccccCceECCCCCEEEEecCCCEEEEECCCCCEEEE
Confidence 345444555 555666777777 456654221 0 0 011122222222333444334445556677777764 55
Q ss_pred EECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCeEEEEEcC-C-cEEEec
Q 011336 240 CGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGN-G-VVYSFG 294 (488)
Q Consensus 240 wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~-G-~v~~wG 294 (488)
++.. ..|..+..+.. .++.-........++++.+ | .+|.++
T Consensus 161 ~~~~-------------~~~~~~~~~~~-g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 161 VKLS-------------GTPFSSAFLDN-GDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp EECS-------------SCCCEEEECTT-SCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred EECC-------------CCccceeEcCC-CCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 5432 01222222222 3455344444456777776 6 445554
No 69
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=58.38 E-value=1.3e+02 Score=28.59 Aligned_cols=157 Identities=16% Similarity=0.113 Sum_probs=76.0
Q ss_pred CCEEEEEeCC--ceeEEEEcCCcEEEEeCC--CCCcccCCCCCCceeCCEEeccC------CCCCeEEEEec----CCee
Q 011336 163 AHVVQVSASE--NHAAFVLQSGQVFTCGDN--SSFCCGHRDTNRPIFRPRLVEAL------KGVPCKQVTAG----LNFT 228 (488)
Q Consensus 163 ~~i~~i~~G~--~~~~~lt~~G~vy~wG~n--~~gqlG~~~~~~~~~~p~~v~~~------~~~~i~~V~~G----~~h~ 228 (488)
..|..++... ...+.-..||.|..|-.. ..+++- .......+..+ ....+..+..- ....
T Consensus 112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (437)
T 3gre_A 112 STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEV------KFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLL 185 (437)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEE------EEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEE
T ss_pred CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCcee------eccccceeEEEEccCcccccCceEEEEEEcCCCCEE
Confidence 3577776643 445555678999888543 111110 00011111110 22334444421 3445
Q ss_pred EEEEeCCcEEEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeC--CCeEEEEEcCCcEEEecCCCCCccCCCCC
Q 011336 229 GFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQ 306 (488)
Q Consensus 229 ~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G--~~~~~~lt~~G~v~~wG~n~~gqlG~~~~ 306 (488)
+.-+.+|.|+.|-.... .....+........|..++.. ....+.-..+|.|..|-....
T Consensus 186 ~~~~~d~~i~iwd~~~~-----------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-------- 246 (437)
T 3gre_A 186 VALTNLSRVIIFDIRTL-----------ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN-------- 246 (437)
T ss_dssp EEEETTSEEEEEETTTC-----------CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT--------
T ss_pred EEEeCCCeEEEEeCCCC-----------eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc--------
Confidence 55577899999943221 111122221112567777764 344555678889999965321
Q ss_pred CCCcCceeeeecc-cCCeeEEEEEeCC----C--eEEEEeCCCcEEEEecC
Q 011336 307 HDELQPRAIQTFR-RKGIHVVRVSAGD----E--HVVALDSSGYVYTWGKG 350 (488)
Q Consensus 307 ~~~~~p~~i~~~~-~~~~~i~~i~~g~----~--h~~~lt~~G~vy~wG~n 350 (488)
..+..+. .....|..++... + ..+.-..||.|..|-..
T Consensus 247 ------~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 291 (437)
T 3gre_A 247 ------VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV 291 (437)
T ss_dssp ------EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred ------cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence 1122111 1223566664332 2 22334567888888654
No 70
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=57.57 E-value=1.3e+02 Score=28.58 Aligned_cols=136 Identities=17% Similarity=0.134 Sum_probs=74.0
Q ss_pred eCCCCCCEEE--EEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEec-----CCeeEE
Q 011336 158 NFPSAAHVVQ--VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG-----LNFTGF 230 (488)
Q Consensus 158 ~~~~~~~i~~--i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G-----~~h~~~ 230 (488)
.+.....+.. ++.+..+.+++|+.|++|.+-...--..|....+. ..-..+..-++.+|+.+..- ..+.++
T Consensus 41 ~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~--~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~ 118 (370)
T 3l6v_A 41 STKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGR--PIINWIPLESGERVQAVLPVREYADNRYVFM 118 (370)
T ss_dssp ECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCE--EGGGSCCCCTTCCEEEEEEESCCCTTCEEEE
T ss_pred ccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCc--CHhhccCCCCCCEEEEEEEeccCCCCcEEEE
Confidence 3343334443 44455668889999999988655433222222211 11111222346678877653 346788
Q ss_pred EEeCCcEEEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEE--EeCCCeEEEEEcCCcEEEecCCCCCccC
Q 011336 231 LTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQI--AAGPSYMLAVTGNGVVYSFGSGSNFCLG 302 (488)
Q Consensus 231 lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i--~~G~~~~~~lt~~G~v~~wG~n~~gqlG 302 (488)
+|++|.+.-.-...+-... ..-.....+.+...++.+ ..+..+.+++|++|.+..+-...-..+|
T Consensus 119 ~T~~G~vKrt~l~e~~~~~-------~~G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~g 185 (370)
T 3l6v_A 119 ATRNGTVKKTPLSEFAFRL-------ARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMG 185 (370)
T ss_dssp EETTSEEEEEEGGGGCSCC-------TTCEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred EeCCCeEEEeEHHHhhccc-------CCceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccC
Confidence 8999988766543332110 111122222233445443 3466789999999999887654433333
No 71
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=57.53 E-value=1.1e+02 Score=27.85 Aligned_cols=22 Identities=0% Similarity=-0.040 Sum_probs=15.3
Q ss_pred eCCceeEEEEcCCcEEEEeCCC
Q 011336 170 ASENHAAFVLQSGQVFTCGDNS 191 (488)
Q Consensus 170 ~G~~~~~~lt~~G~vy~wG~n~ 191 (488)
.+.-..++++.+|++|..+...
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~ 44 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGD 44 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCC
Confidence 3444566778888998877655
No 72
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=57.30 E-value=1.1e+02 Score=27.70 Aligned_cols=209 Identities=8% Similarity=-0.023 Sum_probs=104.4
Q ss_pred CCCEEEEEeC------CceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEecc-CCCCCeEEEEecCC------ee
Q 011336 162 AAHVVQVSAS------ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEA-LKGVPCKQVTAGLN------FT 228 (488)
Q Consensus 162 ~~~i~~i~~G------~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~-~~~~~i~~V~~G~~------h~ 228 (488)
...|..|+.. ....++-..+|.|..|-...... ......... .....|..++-... ..
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l 88 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE---------IRLLQSYVDADADENFYTCAWTYDSNTSHPLL 88 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC---------EEEEEEEECSCTTCCEEEEEEEECTTTCCEEE
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE---------EEeeeeccccCCCCcEEEEEeccCCCCCCCEE
Confidence 3467777765 45566777788899996553211 111111111 12234555554333 44
Q ss_pred EEEEeCCcEEEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeC---CCeEEEEEcCCcEEEecCCCCCccCCCC
Q 011336 229 GFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG---PSYMLAVTGNGVVYSFGSGSNFCLGHGE 305 (488)
Q Consensus 229 ~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G---~~~~~~lt~~G~v~~wG~n~~gqlG~~~ 305 (488)
+.-..+|.|..|-.... .....+.. ....|..++.. ....+.-..+|.|+.|-......
T Consensus 89 ~~~~~dg~i~v~d~~~~-----------~~~~~~~~--~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----- 150 (366)
T 3k26_A 89 AVAGSRGIIRIINPITM-----------QCIKHYVG--HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL----- 150 (366)
T ss_dssp EEEETTCEEEEECTTTC-----------CEEEEEES--CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE-----
T ss_pred EEecCCCEEEEEEchhc-----------eEeeeecC--CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE-----
Confidence 55567899999943211 01111221 12567777764 35566667899999996532110
Q ss_pred CCCCcCceeeeecccCCeeEEEEEeCC--CeEEEEeCCCcEEEEecCCCCCCC-------CCC--CC------Ccccce-
Q 011336 306 QHDELQPRAIQTFRRKGIHVVRVSAGD--EHVVALDSSGYVYTWGKGYCGALG-------HGD--EI------DKTLPE- 367 (488)
Q Consensus 306 ~~~~~~p~~i~~~~~~~~~i~~i~~g~--~h~~~lt~~G~vy~wG~n~~gqlG-------~~~--~~------~~~~p~- 367 (488)
...+..+......|..++... .+.+....+|.|+.|-......+. ... .. ....|.
T Consensus 151 ------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (366)
T 3k26_A 151 ------VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDF 224 (366)
T ss_dssp ------EEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSE
T ss_pred ------EEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcc
Confidence 111111122333566666543 344555788999999754311100 000 00 000000
Q ss_pred eecCCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCC
Q 011336 368 PLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMG 403 (488)
Q Consensus 368 ~v~~~~~~~i~~v~~G~~~t~~lt~~G~vy~wG~n~ 403 (488)
.........|..++......+.-..+|.|..|-...
T Consensus 225 ~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~ 260 (366)
T 3k26_A 225 STRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGK 260 (366)
T ss_dssp EECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESS
T ss_pred ccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCC
Confidence 001112334555555566666677889999998544
No 73
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=57.19 E-value=1.1e+02 Score=27.68 Aligned_cols=198 Identities=9% Similarity=0.039 Sum_probs=92.1
Q ss_pred CceEEEecCce-eEee--eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeC--CceeEEEEcCCcEEE
Q 011336 112 GNMQITTGRYH-TLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS--ENHAAFVLQSGQVFT 186 (488)
Q Consensus 112 ~i~~i~~G~~h-~~~l--~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G--~~~~~~lt~~G~vy~ 186 (488)
.|..++.-... .++. .||.|+.|-.... + ....+. .....|..++.. +...+....||.|+.
T Consensus 34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~-----------~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNG-E-----------RLGTLD-GHTGTIWSIDVDCFTKYCVTGSADYSIKL 100 (369)
T ss_dssp CEEEEEECTTSCEEEEEESSSCEEEEETTTC-C-----------EEEEEC-CCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-h-----------hhhhhh-hcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 35555554322 2333 7889999954321 0 111111 122356666654 345555667899999
Q ss_pred EeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEe--cCCeeEEEEeC-----CcEEEEECCCCCccCCCCCCCCCCc
Q 011336 187 CGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLNFTGFLTIR-----GHVHTCGSNTHGQLGHGDTLDRPTP 259 (488)
Q Consensus 187 wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~--G~~h~~~lt~~-----G~vy~wG~n~~gqlG~~~~~~~~~p 259 (488)
|-..... ... .+. ....|..++. ...+.++...+ |.|+.|-.........-........
T Consensus 101 wd~~~~~---------~~~---~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~ 166 (369)
T 3zwl_B 101 WDVSNGQ---------CVA---TWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI 166 (369)
T ss_dssp EETTTCC---------EEE---EEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred EECCCCc---------EEE---Eee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence 9654311 111 111 1223444443 23334444455 7888885432221110000000111
Q ss_pred eeecCCCCCCCEEEEEeC--CCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCCC--eE
Q 011336 260 KSIAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE--HV 335 (488)
Q Consensus 260 ~~i~~~~~~~~i~~i~~G--~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~--h~ 335 (488)
..+........+..++.. ..+.++-..+|.|+.|-....+ ..+..+......|..++...+ ..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~~~l 233 (369)
T 3zwl_B 167 HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY-------------EYVDSIDLHEKSISDMQFSPDLTYF 233 (369)
T ss_dssp EEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT-------------EEEEEEECCSSCEEEEEECTTSSEE
T ss_pred eeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc-------------EeEEEEecCCCceeEEEECCCCCEE
Confidence 111111111255555544 3355566778899988643311 122222222335666655433 34
Q ss_pred EEEeCCCcEEEEec
Q 011336 336 VALDSSGYVYTWGK 349 (488)
Q Consensus 336 ~~lt~~G~vy~wG~ 349 (488)
+....+|.|+.|-.
T Consensus 234 ~~~~~d~~i~v~d~ 247 (369)
T 3zwl_B 234 ITSSRDTNSFLVDV 247 (369)
T ss_dssp EEEETTSEEEEEET
T ss_pred EEecCCceEEEEEC
Confidence 44567888888865
No 74
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=56.79 E-value=1.1e+02 Score=27.39 Aligned_cols=172 Identities=12% Similarity=0.074 Sum_probs=81.7
Q ss_pred eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeCCc--eeEEEEcCCcEEEEeCCCCCcccCCCCCCce
Q 011336 127 SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN--HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPI 204 (488)
Q Consensus 127 ~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G~~--~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~ 204 (488)
.||.|..|..... + ....+ ......|..++.... ..+.-..||.|..|-...... .
T Consensus 43 ~dg~i~iw~~~~~-~-----------~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~---------~ 100 (312)
T 4ery_A 43 ADKLIKIWGAYDG-K-----------FEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---------L 100 (312)
T ss_dssp TTSCEEEEETTTC-C-----------EEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE---------E
T ss_pred CCCeEEEEeCCCc-c-----------cchhh-ccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcE---------E
Confidence 7899999975421 1 01111 112235666665433 344445788899996543110 0
Q ss_pred eCCEEeccCCCCCeEEEEec--CCeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC--Ce
Q 011336 205 FRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SY 280 (488)
Q Consensus 205 ~~p~~v~~~~~~~i~~V~~G--~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~--~~ 280 (488)
..+.. ....|..++.. ....+.-..+|.|..|-..... ....+... ...|..++... ..
T Consensus 101 ---~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------~~~~~~~~--~~~v~~~~~~~~~~~ 163 (312)
T 4ery_A 101 ---KTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-----------CLKTLPAH--SDPVSAVHFNRDGSL 163 (312)
T ss_dssp ---EEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-----------EEEEECCC--SSCEEEEEECTTSSE
T ss_pred ---EEEcC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-----------EEEEecCC--CCcEEEEEEcCCCCE
Confidence 01111 11234444432 2334444678889888432110 01111111 13566665543 34
Q ss_pred EEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEe--CCCeEEEEeCCCcEEEEecC
Q 011336 281 MLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSA--GDEHVVALDSSGYVYTWGKG 350 (488)
Q Consensus 281 ~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~--g~~h~~~lt~~G~vy~wG~n 350 (488)
.+.-..+|.|..|-......+ ..+. ......+..++. ...+.++-..+|.|..|-..
T Consensus 164 l~~~~~d~~i~~wd~~~~~~~-----------~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 222 (312)
T 4ery_A 164 IVSSSYDGLCRIWDTASGQCL-----------KTLI--DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222 (312)
T ss_dssp EEEEETTSCEEEEETTTCCEE-----------EEEC--CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred EEEEeCCCcEEEEECCCCcee-----------eEEe--ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 555667888888864321100 0110 111123433333 33445556788889888653
No 75
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=56.44 E-value=1.3e+02 Score=28.03 Aligned_cols=225 Identities=15% Similarity=0.131 Sum_probs=116.4
Q ss_pred EEEecCCeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCc--eeecCCCCCCCEEEEEeCC-----CeEEEEEcCCcEEE
Q 011336 220 QVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTP--KSIAPLEEVGSVVQIAAGP-----SYMLAVTGNGVVYS 292 (488)
Q Consensus 220 ~V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p--~~i~~~~~~~~i~~i~~G~-----~~~~~lt~~G~v~~ 292 (488)
.++.+..+.+++|+.|++|..-....-..+. ...-.| ..+ .+.+.++|+.+..-. .+.+++|++|.+.-
T Consensus 45 ~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r---~a~G~~i~~~i-~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKr 120 (323)
T 1wp5_A 45 LEMNTKDVLLLFTNKGNYLYCPVHELPDIRW---KDLGQHIANII-PIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKK 120 (323)
T ss_dssp EEEETTSEEEEEETTSEEEEEEGGGSCBCCT---TSCCEEGGGTS-CCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEE
T ss_pred EEECCCCEEEEEECCCEEEEEEHHHCcCCCC---CCCCcChhhcc-CCCCCCEEEEEEEecccCCCceEEEEeCCCeEEE
Confidence 3556778889999999999986543222211 111111 112 233446777765432 35888999998877
Q ss_pred ecCCCCCccCCCCCCCCcCceeeeecccCCeeEEE--EEeCCCeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeec
Q 011336 293 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVR--VSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLS 370 (488)
Q Consensus 293 wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~--i~~g~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~ 370 (488)
.-..++-... .........+... ..++. +..+.++.+++|++|+++.+-.++.-.+|... .....-
T Consensus 121 t~l~e~~~~~------r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a-----~GV~~i 188 (323)
T 1wp5_A 121 TELKHYKAQR------YSKPLTGINLKND-DQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRA-----AGVKGM 188 (323)
T ss_dssp EEGGGGCCSC------CSSCEECSCCCTT-CCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSC-----CCEECC
T ss_pred eEHHHhhhcc------ccCceEEEEeCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCC-----cCEEEE
Confidence 6543332110 0111111112211 23333 33467788899999999998876544444321 112222
Q ss_pred C-CCCCcEEEEEee--CC-eEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceEcCccCCCCEEEE--EecCCeEEE
Q 011336 371 S-LKSHLAVQVCAR--KR-KTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQI--STGLYHTVV 444 (488)
Q Consensus 371 ~-~~~~~i~~v~~G--~~-~t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~v--~~G~~ht~~ 444 (488)
. ..+..|+.+..= .. ..+.+|++|..--.-..++-.-+.+... +..+...+. .+..++.+ ..+..+.++
T Consensus 189 ~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kG----v~~~~~~~~-~~~~l~~~~~v~~~~~i~~ 263 (323)
T 1wp5_A 189 NLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRG----VVILRELKA-NPHRISGFVVAQDSDTIYL 263 (323)
T ss_dssp CCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCC----EECSCCCSS-SCCCEEEEEEECTTCEEEE
T ss_pred EeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCC----EECeeecCC-CCceEEEEEEeCCCCeEEE
Confidence 2 234456665432 22 5666777776444433333222222110 111211111 12244432 345678899
Q ss_pred EEcCCCEEEEeCCCCCCCCCC
Q 011336 445 VTDRGRLFGFGDNERAQLGHD 465 (488)
Q Consensus 445 l~~~G~v~~wG~n~~GqLG~g 465 (488)
++++|++.-.-.++--..|..
T Consensus 264 it~~g~~ir~~~~~i~~~~R~ 284 (323)
T 1wp5_A 264 QTEKSFIETIKVGDIRFSDRY 284 (323)
T ss_dssp EETTSCEEEEEGGGSCBCCSS
T ss_pred EeCCCeEEEEEhhhcCccCcc
Confidence 999999988776665555543
No 76
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=55.38 E-value=1.1e+02 Score=26.97 Aligned_cols=16 Identities=6% Similarity=-0.105 Sum_probs=10.2
Q ss_pred eEEEEEcCCcEEEEEc
Q 011336 386 KTFVLVDTGSVYGFGW 401 (488)
Q Consensus 386 ~t~~lt~~G~vy~wG~ 401 (488)
..+++..+|++|+-..
T Consensus 210 ~~i~~d~~G~l~v~~~ 225 (286)
T 1q7f_A 210 IGVGINSNGEILIADN 225 (286)
T ss_dssp EEEEECTTCCEEEEEC
T ss_pred cEEEECCCCCEEEEeC
Confidence 3466666777777653
No 77
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=53.72 E-value=1.4e+02 Score=27.64 Aligned_cols=257 Identities=12% Similarity=-0.023 Sum_probs=120.0
Q ss_pred CCEEEEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecC---------CeeEEEEe
Q 011336 163 AHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL---------NFTGFLTI 233 (488)
Q Consensus 163 ~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~---------~h~~~lt~ 233 (488)
..|..|+......+.-..||.|+.|-..... . .........+.. ....|..++... .+.+.-..
T Consensus 17 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~----~--~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~g~~~~~l~s~~~ 89 (397)
T 1sq9_A 17 ADIFSVSACNSFTVSCSGDGYLKVWDNKLLD----N--ENPKDKSYSHFV-HKSGLHHVDVLQAIERDAFELCLVATTSF 89 (397)
T ss_dssp SCEEEEEECSSEEEEEETTSEEEEEESBCCT----T--CCGGGGEEEEEC-CTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred cCeEEEEecCCeEEEEcCCCEEEEEECCCcc----c--ccCCCcceEEec-CCCcEEEEEEecccccCCccccEEEEEcC
Confidence 3788888777666666789999999765421 0 001111112221 223456555432 34444567
Q ss_pred CCcEEEEECCCCCccCCCCCCCCCCceeecCCCC---CCCEEEEEeC------CCe-EEEEEcCCcEEEecCCCCCccCC
Q 011336 234 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEE---VGSVVQIAAG------PSY-MLAVTGNGVVYSFGSGSNFCLGH 303 (488)
Q Consensus 234 ~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~---~~~i~~i~~G------~~~-~~~lt~~G~v~~wG~n~~gqlG~ 303 (488)
+|.|+.|-...... ........+..... ...|..++.. ..+ .+.-..+|.|+.|-......-+.
T Consensus 90 dg~i~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 90 SGDLLFYRITREDE------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp TSCEEEEEEEECTT------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred CCCEEEEEccCCcc------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 89999984322110 00000122222210 1456666654 445 55567889999986543100000
Q ss_pred CCCCCCcCce-eeee----cccCCeeEEEEEeCCC-eEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCC--C--
Q 011336 304 GEQHDELQPR-AIQT----FRRKGIHVVRVSAGDE-HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSL--K-- 373 (488)
Q Consensus 304 ~~~~~~~~p~-~i~~----~~~~~~~i~~i~~g~~-h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~--~-- 373 (488)
+. .....|. .+.. .......|..++.... ..+.-..+|.|+.|-.... .....+... .
T Consensus 164 ~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----------~~~~~~~~~~~h~~ 231 (397)
T 1sq9_A 164 SL-TLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTL-----------RPLYNFESQHSMIN 231 (397)
T ss_dssp HT-TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTT-----------EEEEEEECCC---C
T ss_pred cc-eeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCC-----------ceeEEEeccccccc
Confidence 00 0011121 1110 0111223455544433 3334467888888865321 001111110 1
Q ss_pred -CCcEEEEEee--CCeEEEEEcC---CcEEEEEcCCCCCCCCCCCCCCCceecceEcCc------------cCCCCEEEE
Q 011336 374 -SHLAVQVCAR--KRKTFVLVDT---GSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDS------------LRAHHVSQI 435 (488)
Q Consensus 374 -~~~i~~v~~G--~~~t~~lt~~---G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~------------~~~~~v~~v 435 (488)
...|..++.. ..+.++-..+ |.|+.|-...... ...+.. .....|..+
T Consensus 232 ~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~v~~~ 297 (397)
T 1sq9_A 232 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER--------------IGSLSVPTHSSQASLGEFAHSSWVMSL 297 (397)
T ss_dssp CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE--------------EEEECBC--------CCBSBSSCEEEE
T ss_pred cCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc--------------cceeccCcccccccccccccCCcEEEE
Confidence 3346665553 3344445566 8888887432110 111111 023456666
Q ss_pred Eec--CCeEEEEEcCCCEEEEeCCC
Q 011336 436 STG--LYHTVVVTDRGRLFGFGDNE 458 (488)
Q Consensus 436 ~~G--~~ht~~l~~~G~v~~wG~n~ 458 (488)
+.. ....+.-..||.|+.|=...
T Consensus 298 ~~~~~~~~l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 298 SFNDSGETLCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTT
T ss_pred EECCCCCEEEEEeCCCeEEEEEcCC
Confidence 654 34445556788888886543
No 78
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=53.21 E-value=88 Score=25.24 Aligned_cols=106 Identities=14% Similarity=0.058 Sum_probs=60.8
Q ss_pred CCEEEEEeCC-CeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeC-CCeEEEEeCCCcEEE
Q 011336 269 GSVVQIAAGP-SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAG-DEHVVALDSSGYVYT 346 (488)
Q Consensus 269 ~~i~~i~~G~-~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g-~~h~~~lt~~G~vy~ 346 (488)
....++.|-. .+-+-+..||.|-...... +...-.++... ...++.|.|- ..+.+++..+|+||.
T Consensus 30 ~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~----------~~~s~lei~sv---~~G~V~L~g~~sg~yL~mn~~G~l~G 96 (142)
T 3p6j_A 30 NGEVLLKSTETGQYLRINPDGTVDGTRDRS----------DTHIQFQISPE---GNGEVLLKSTETGQYLRINPDGTVDG 96 (142)
T ss_dssp TTCEEEEETTTCCEEEECTTSBEEEECCTT----------CGGGCEEEEEE---ETTEEEEEETTTTEEEEECTTSBEEE
T ss_pred CcEEEEEEeCCCEEEEECCCCCEeeecCCC----------CCceEEEEEEc---cCCEEEEEEecCCEEEeECCCCCEee
Confidence 6788999976 6777888899998654321 11111222221 1247788875 567888999999997
Q ss_pred EecCCCCCCCCCCCCCcccceeecC-CCCCcEEEEEeeCCeEEEEEcCCcEEE
Q 011336 347 WGKGYCGALGHGDEIDKTLPEPLSS-LKSHLAVQVCARKRKTFVLVDTGSVYG 398 (488)
Q Consensus 347 wG~n~~gqlG~~~~~~~~~p~~v~~-~~~~~i~~v~~G~~~t~~lt~~G~vy~ 398 (488)
--. .......-+.+.. .-...+..+.. ...+|+.++|++|+
T Consensus 97 s~~---------~t~ecsflEi~~en~y~v~i~g~~s--g~YLamnk~Grlyg 138 (142)
T 3p6j_A 97 TRD---------RSDTHIQFQISPEGNGEVLLKSTET--GQYLRINPDGTVDG 138 (142)
T ss_dssp ECC---------TTCGGGCEEEEECSTTCEEEEETTT--CCEEEECTTSBEEE
T ss_pred ccc---------CCCCceEEEEEeecCcEEEEEEecC--CEEEEECCCcCCcc
Confidence 421 0111122222221 11212232323 34899999999995
No 79
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=52.42 E-value=91 Score=25.16 Aligned_cols=108 Identities=14% Similarity=0.086 Sum_probs=60.5
Q ss_pred CCCeEEEEecC-CeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeC-CCeEEEEEcCCcEEE
Q 011336 215 GVPCKQVTAGL-NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG-PSYMLAVTGNGVVYS 292 (488)
Q Consensus 215 ~~~i~~V~~G~-~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G-~~~~~~lt~~G~v~~ 292 (488)
..+.+++-|-. .+-+-+..||.|-..... .+...-..+.... ..++.|.|- ..+-+++..+|+||.
T Consensus 29 ~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~----------~~~~s~lei~sv~--~G~V~L~g~~sg~yL~mn~~G~l~G 96 (142)
T 3p6j_A 29 GNGEVLLKSTETGQYLRINPDGTVDGTRDR----------SDTHIQFQISPEG--NGEVLLKSTETGQYLRINPDGTVDG 96 (142)
T ss_dssp STTCEEEEETTTCCEEEECTTSBEEEECCT----------TCGGGCEEEEEEE--TTEEEEEETTTTEEEEECTTSBEEE
T ss_pred cCcEEEEEEeCCCEEEEECCCCCEeeecCC----------CCCceEEEEEEcc--CCEEEEEEecCCEEEeECCCCCEee
Confidence 44668888865 566777889998765321 1111222222221 357888876 578889999999997
Q ss_pred ecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCCCeEEEEeCCCcEEE
Q 011336 293 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYT 346 (488)
Q Consensus 293 wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~ 346 (488)
--.- .+.....++.....-..-+..+..| ..+|++++|++|.
T Consensus 97 s~~~----------t~ecsflEi~~en~y~v~i~g~~sg--~YLamnk~Grlyg 138 (142)
T 3p6j_A 97 TRDR----------SDTHIQFQISPEGNGEVLLKSTETG--QYLRINPDGTVDG 138 (142)
T ss_dssp ECCT----------TCGGGCEEEEECSTTCEEEEETTTC--CEEEECTTSBEEE
T ss_pred cccC----------CCCceEEEEEeecCcEEEEEEecCC--EEEEECCCcCCcc
Confidence 4221 1112222222211111222222233 4789999999996
No 80
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=51.66 E-value=1.5e+02 Score=27.31 Aligned_cols=216 Identities=15% Similarity=0.110 Sum_probs=112.5
Q ss_pred EEEecCCeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCc--eeecCCCCCCCEEEEEe-----CCCeEEEEEcCCcEEE
Q 011336 220 QVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTP--KSIAPLEEVGSVVQIAA-----GPSYMLAVTGNGVVYS 292 (488)
Q Consensus 220 ~V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p--~~i~~~~~~~~i~~i~~-----G~~~~~~lt~~G~v~~ 292 (488)
.++.+..+.+++|+.|++|..-..+.-..+. ...-.| ..+ .+...++|+.+.. ...+.+++|++|.+.-
T Consensus 48 ~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~---~a~G~~i~~~l-~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Kr 123 (307)
T 1zi0_A 48 LVANTHDHILCFSSRGRVYSMKVYQLPEATR---GARGRPIVNLL-PLEQDERITAILPVTEFEEGVKVFMATANGTVKK 123 (307)
T ss_dssp EEEETTCEEEEEETTSEEEEEEGGGSCCCCS---SSCCEEGGGTS-CCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEE
T ss_pred EEECCCCEEEEEECCCEEEEEEhhHCcCCCC---CCCCeEhhhcc-CCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEE
Confidence 3456778889999999999986543222111 111222 112 2334467887755 2346788899998876
Q ss_pred ecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEE--EeCCCeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeec
Q 011336 293 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRV--SAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLS 370 (488)
Q Consensus 293 wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i--~~g~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~ 370 (488)
.-..++-... ........+... ..++.+ ..+..+.+++|++|+++.+-..+.-.+|....- ...+.
T Consensus 124 t~l~e~~~~~-------r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~G----v~~i~ 191 (307)
T 1zi0_A 124 TVLTEFNRLR-------TAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG----VRGIR 191 (307)
T ss_dssp EEGGGGTTCC-------TTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCC----EECCC
T ss_pred EEHHHhhccc-------cCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCC----eEeEE
Confidence 6433321110 011111112211 234332 335677888999999999876554444432211 11222
Q ss_pred CCCCCcEEEEEee--CCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceEcCcc--CCCCEEEEEe--cCCeEEE
Q 011336 371 SLKSHLAVQVCAR--KRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSL--RAHHVSQIST--GLYHTVV 444 (488)
Q Consensus 371 ~~~~~~i~~v~~G--~~~t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~--~~~~v~~v~~--G~~ht~~ 444 (488)
...+..|+.+..- ....+++|++|.+--.--.++-.-+.+.. -+....+ .+..++.+.. .....++
T Consensus 192 L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~k--------G~~~~~~~~~~~~lv~~~~v~~~~~l~~ 263 (307)
T 1zi0_A 192 LGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATK--------GVISIKVTERNGLVVGAVQVDDCDQIMM 263 (307)
T ss_dssp CCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSC--------CEESSCCCTTTCSEEEEEEECTTCEEEE
T ss_pred eCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCC--------CEEeeEecCCCCeEEEEEEeCCCceEEE
Confidence 2345567776542 23456777777654433222221111110 1111111 1234555443 5667889
Q ss_pred EEcCCCEEEEeCCCC
Q 011336 445 VTDRGRLFGFGDNER 459 (488)
Q Consensus 445 l~~~G~v~~wG~n~~ 459 (488)
++++|++.-+-.++-
T Consensus 264 ~t~~g~~ir~~~~~i 278 (307)
T 1zi0_A 264 ITDAGTLVRTRVSEI 278 (307)
T ss_dssp EESSCCEEEEEGGGS
T ss_pred EcCCCcEEEEecccc
Confidence 999999887765554
No 81
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=50.46 E-value=49 Score=29.96 Aligned_cols=17 Identities=12% Similarity=0.159 Sum_probs=13.1
Q ss_pred ceeEeeeCCcEEEEeCC
Q 011336 121 YHTLLISNSSVFSCGSS 137 (488)
Q Consensus 121 ~h~~~l~~g~vy~wG~n 137 (488)
.|++++.++++|++|-.
T Consensus 101 ~~~~~~~~~~iyv~GG~ 117 (302)
T 2xn4_A 101 TLGAAVLNGLLYAVGGF 117 (302)
T ss_dssp SCEEEEETTEEEEEEEE
T ss_pred ceEEEEECCEEEEEcCC
Confidence 56666688999999854
No 82
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=49.52 E-value=1.6e+02 Score=27.28 Aligned_cols=120 Identities=9% Similarity=0.063 Sum_probs=54.9
Q ss_pred CeEEEEecC--CeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeC---CCeEEEEEcCCcEE
Q 011336 217 PCKQVTAGL--NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG---PSYMLAVTGNGVVY 291 (488)
Q Consensus 217 ~i~~V~~G~--~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G---~~~~~~lt~~G~v~ 291 (488)
.|..++... ...+.-..+|.|..|-...... .......+.. ....|..++.. ....+.-..+|.|+
T Consensus 69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-------~~~~~~~~~~--h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 139 (416)
T 2pm9_A 69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-------AINSMARFSN--HSSSVKTVKFNAKQDNVLASGGNNGEIF 139 (416)
T ss_dssp CEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-------CCCEEEECCC--SSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred ceEEEEECCCCCeEEEEccCCeEEEeecccccc-------cccchhhccC--CccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence 455555432 3334445789999994322100 0001111111 11356566554 44555566788999
Q ss_pred EecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCCC---eEEEEeCCCcEEEEecC
Q 011336 292 SFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE---HVVALDSSGYVYTWGKG 350 (488)
Q Consensus 292 ~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~---h~~~lt~~G~vy~wG~n 350 (488)
.|-........ ....+..+.........|..++.... ..+.-..+|.|..|-..
T Consensus 140 iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 196 (416)
T 2pm9_A 140 IWDMNKCTESP-----SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK 196 (416)
T ss_dssp BCBTTTTSSCT-----TTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT
T ss_pred EEECCCCcccc-----ccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC
Confidence 99664422000 00011111111112224555554432 33334678889998653
No 83
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=48.94 E-value=1.7e+02 Score=27.12 Aligned_cols=229 Identities=10% Similarity=-0.027 Sum_probs=108.8
Q ss_pred CCceEEEecCceeEee--eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeCC--ceeEEEEcCCcEEE
Q 011336 111 AGNMQITTGRYHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE--NHAAFVLQSGQVFT 186 (488)
Q Consensus 111 ~~i~~i~~G~~h~~~l--~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G~--~~~~~lt~~G~vy~ 186 (488)
..|..++.-....++. .||.|..|=-.....+ .............|..|+... .+.+.-..||.|..
T Consensus 83 ~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~---------~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~i 153 (344)
T 4gqb_B 83 AGVADLTWVGERGILVASDSGAVELWELDENETL---------IVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKV 153 (344)
T ss_dssp SCEEEEEEETTTEEEEEETTSEEEEEEECTTSSC---------EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CCEEEEEEeCCCeEEEEECCCEEEEEeccCCCce---------eEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 3466666554444555 8899999954321110 011111111223566666543 33344457888888
Q ss_pred EeCCCCCcccCCCCCCceeCCEEeccCC--CCCeEEEEecC---CeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCcee
Q 011336 187 CGDNSSFCCGHRDTNRPIFRPRLVEALK--GVPCKQVTAGL---NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKS 261 (488)
Q Consensus 187 wG~n~~gqlG~~~~~~~~~~p~~v~~~~--~~~i~~V~~G~---~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~ 261 (488)
|-.... ..+..+. ...|..++... ...+.-..||.|..|=... ++ ....
T Consensus 154 wd~~~~---------------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~-~~----------~~~~ 207 (344)
T 4gqb_B 154 WDLAQQ---------------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC-PK----------PASQ 207 (344)
T ss_dssp EETTTT---------------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS-SS----------CEEE
T ss_pred EECCCC---------------cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccc-cc----------eeee
Confidence 854331 1111111 23466666533 2233345789999993221 10 0111
Q ss_pred ecCCCCCCCEEEEEeC---CCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCC---CeE
Q 011336 262 IAPLEEVGSVVQIAAG---PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD---EHV 335 (488)
Q Consensus 262 i~~~~~~~~i~~i~~G---~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~---~h~ 335 (488)
+........+..++.. ....+.-..+|.|..|-.... ..+..+......|..++... ...
T Consensus 208 ~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~--------------~~~~~~~~h~~~v~~v~fsp~g~~~l 273 (344)
T 4gqb_B 208 IGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST--------------SCVLSSAVHSQCVTGLVFSPHSVPFL 273 (344)
T ss_dssp CC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC----------------CCEEEECCSSCEEEEEECSSSSCCE
T ss_pred eecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC--------------cEEEEEcCCCCCEEEEEEccCCCeEE
Confidence 1111111345555543 223334467888998854321 11112222233577776643 233
Q ss_pred EEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEee-CCeEEE--EEcCCcEEEEEc
Q 011336 336 VALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR-KRKTFV--LVDTGSVYGFGW 401 (488)
Q Consensus 336 ~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G-~~~t~~--lt~~G~vy~wG~ 401 (488)
+.-..||.|+.|-... +++ ..... ....|..|+.. +...++ -..||+|..|=-
T Consensus 274 asgs~D~~i~vwd~~~-~~~-----------~~~~~-H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 274 ASLSEDCSLAVLDSSL-SEL-----------FRSQA-HRDFVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp EEEETTSCEEEECTTC-CEE-----------EEECC-CSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred EEEeCCCeEEEEECCC-CcE-----------EEEcC-CCCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 3457899999995421 111 11111 12347777654 222233 346899999863
No 84
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=46.81 E-value=1.6e+02 Score=26.30 Aligned_cols=164 Identities=16% Similarity=0.113 Sum_probs=77.0
Q ss_pred CCEEEEEeC-CCeEEEEEcCCc-EEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCCCeEEEEeCCCc-EE
Q 011336 269 GSVVQIAAG-PSYMLAVTGNGV-VYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGY-VY 345 (488)
Q Consensus 269 ~~i~~i~~G-~~~~~~lt~~G~-v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~-vy 345 (488)
.++.-..++ ....++++.+|+ ++.++.... .......|..+.... .+ ++.-.........+++.+|+ +|
T Consensus 88 G~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~------~~~~~~~~~~v~~~~-~G-~~lv~~~~~~~v~~~d~~G~~~w 159 (276)
T 3no2_A 88 GNALVAWCGHPSTILEVNMKGEVLSKTEFETG------IERPHAQFRQINKNK-KG-NYLVPLFATSEVREIAPNGQLLN 159 (276)
T ss_dssp SCEEEEEESTTEEEEEECTTSCEEEEEEECCS------CSSGGGSCSCCEECT-TS-CEEEEETTTTEEEEECTTSCEEE
T ss_pred CCEEEEecCCCCEEEEEeCCCCEEEEEeccCC------CCcccccccCceECC-CC-CEEEEecCCCEEEEECCCCCEEE
Confidence 456555666 556666777785 455543211 001111222222222 22 34333334455566777774 56
Q ss_pred EEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEeeCC-eEEEEEcC-Cc-EEEEEcCCCCCCCCCCCCCCCceecce
Q 011336 346 TWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKR-KTFVLVDT-GS-VYGFGWMGFGSLGFPDRGVSDKVLRPR 422 (488)
Q Consensus 346 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~-~t~~lt~~-G~-vy~wG~n~~gqLG~~~~~~~~~~~~P~ 422 (488)
.++... .|.-+..+.+-.+. |+.... ..+++..+ |+ +|.++.+... ......|.
T Consensus 160 ~~~~~~-------------~~~~~~~~~~g~~~-v~~~~~~~v~~~d~~tG~~~w~~~~~~~~---------~~~l~~~~ 216 (276)
T 3no2_A 160 SVKLSG-------------TPFSSAFLDNGDCL-VACGDAHCFVQLNLESNRIVRRVNANDIE---------GVQLFFVA 216 (276)
T ss_dssp EEECSS-------------CCCEEEECTTSCEE-EECBTTSEEEEECTTTCCEEEEEEGGGSB---------SCCCSEEE
T ss_pred EEECCC-------------CccceeEcCCCCEE-EEeCCCCeEEEEeCcCCcEEEEecCCCCC---------Cccccccc
Confidence 766521 12222223333444 444444 45666666 65 5666643211 00112244
Q ss_pred EcCccCCCCEEEEEe-c---------CCeEEEEEcCCCEEEEeCCCCCCCCC
Q 011336 423 ILDSLRAHHVSQIST-G---------LYHTVVVTDRGRLFGFGDNERAQLGH 464 (488)
Q Consensus 423 ~v~~~~~~~v~~v~~-G---------~~ht~~l~~~G~v~~wG~n~~GqLG~ 464 (488)
-+..+.+..+.-... | .-+.+.++.+|++ .|=.++....|.
T Consensus 217 ~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~-~W~~~~~~~~~~ 267 (276)
T 3no2_A 217 QLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKV-VWQLNDKVKFGM 267 (276)
T ss_dssp EEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBE-EEEECCTTTSCC
T ss_pred cceEcCCCCEEEEeccCccccccccCCceEEEECCCCCE-EEEecCcccccc
Confidence 433344445543332 2 3368889899985 444455555543
No 85
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=46.74 E-value=1.8e+02 Score=26.82 Aligned_cols=263 Identities=12% Similarity=0.103 Sum_probs=133.0
Q ss_pred ceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEE--EEecCCeeEEEEeCCcEEEEECCCCCccCC
Q 011336 173 NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQ--VTAGLNFTGFLTIRGHVHTCGSNTHGQLGH 250 (488)
Q Consensus 173 ~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~--V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~ 250 (488)
...+++|.+|.+--.-...+.....+... ..-+..-++..+.. ++.+..+.+++|+.|++|..-....-..+.
T Consensus 9 ~~~v~~T~~G~iKr~~~~~~~~~~~~~~g-----~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 9 NIVVMLTKKGFLKRLSQNEYKLQGTGGKG-----LSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp EEEEEEETTCBEEEEEGGGSCBCCSSCCC-----EECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred CEEEEEeCCCEEEEeEHHHhhccccCCCC-----ceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 44678899998876644333211111000 00111112233333 455677889999999999985532211111
Q ss_pred CCCCCCCCceeecCCCCCCCEEEEEeC-----CCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeE
Q 011336 251 GDTLDRPTPKSIAPLEEVGSVVQIAAG-----PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHV 325 (488)
Q Consensus 251 ~~~~~~~~p~~i~~~~~~~~i~~i~~G-----~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i 325 (488)
.... .+....+. +...++|+.+... ..+.+++|++|.++..-..++-.. ...-.....+.. +..+
T Consensus 84 ~~~G-~~i~~~l~-l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~-------r~~G~~~i~L~~-~d~l 153 (312)
T 1suu_A 84 ASKG-QNISELIN-LGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAV-------KSRGVIVIKLND-KDFV 153 (312)
T ss_dssp -----CBGGGTSC-CCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC-----------CEECBCCCT-TCCE
T ss_pred cCCC-cChhhccC-CCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhcc-------CCCcEEEEecCC-CCEE
Confidence 1000 01111222 3334678777664 456899999999998765443110 011112222222 2344
Q ss_pred EEEE--eCCCeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEe--eCCeEEEEEcCCcEEEEEc
Q 011336 326 VRVS--AGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCA--RKRKTFVLVDTGSVYGFGW 401 (488)
Q Consensus 326 ~~i~--~g~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~--G~~~t~~lt~~G~vy~wG~ 401 (488)
+.+. .+..+.+++|++|.+..+-.++.-..|....- -..+....+..|+.+.. ...+.++++++|.+...--
T Consensus 154 v~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~G----v~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~ 229 (312)
T 1suu_A 154 TSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQG----VCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNM 229 (312)
T ss_dssp EEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCC----EECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEG
T ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCC----eEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEH
Confidence 4443 35667888999999998876654334332111 11122223445666543 3456788889998777766
Q ss_pred CCCCCCCCCCCCCCCceecceEcCccCCCCEEEE--EecCCeEEEEEcCCCEEEEeCCCC
Q 011336 402 MGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQI--STGLYHTVVVTDRGRLFGFGDNER 459 (488)
Q Consensus 402 n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~v--~~G~~ht~~l~~~G~v~~wG~n~~ 459 (488)
.++-..+.+.... ... .+.......++.+ .......++++++|.+...-.++.
T Consensus 230 ~e~~~~~R~~kGv----~~~-~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~~i 284 (312)
T 1suu_A 230 SKISELKRGATGY----TSY-KKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGKV 284 (312)
T ss_dssp GGSCBCCTTCCCE----ECS-CTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGGGS
T ss_pred HHhcccCCCCCCE----Eee-EccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEcccC
Confidence 6554444432210 000 0110112234432 235667778888887776555443
No 86
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=44.21 E-value=2.2e+02 Score=27.20 Aligned_cols=270 Identities=10% Similarity=0.041 Sum_probs=115.0
Q ss_pred EeeCCCCCCEEEEEeCCceeEEEEcCCc-EEEEeCCC-CCcccCCCCCCceeCCEEeccCCCCCeEEEEec---------
Q 011336 156 RINFPSAAHVVQVSASENHAAFVLQSGQ-VFTCGDNS-SFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--------- 224 (488)
Q Consensus 156 ~~~~~~~~~i~~i~~G~~~~~~lt~~G~-vy~wG~n~-~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G--------- 224 (488)
.+.......+..|..|...-++++.||+ +|....-. .+.-|. ....-..+..-....+..|..+
T Consensus 63 ViD~~t~~v~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~-----~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~ 137 (386)
T 3sjl_D 63 VIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGE-----RTDYVEVFDPVTLLPTADIELPDAPRFLVGT 137 (386)
T ss_dssp EEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEE-----EEEEEEEECTTTCCEEEEEEETTCCCCCBSC
T ss_pred EEECCCCeEEEEEECCCCCcEEECCCCCEEEEEcccccccccCC-----CCCEEEEEECCCCeEEEEEECCCccccccCC
Confidence 3444444456677777655589999987 77753210 000000 0001111222223334556554
Q ss_pred CCeeEEEEeCCc-EEEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCeEEEEEcCCcEEEecCCCCCccCC
Q 011336 225 LNFTGFLTIRGH-VHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGH 303 (488)
Q Consensus 225 ~~h~~~lt~~G~-vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~wG~n~~gqlG~ 303 (488)
.-+.++++.||+ +|+.-....+.+..-+......-..|+.. ....-...|....++++.+|++........+..-.
T Consensus 138 ~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~---g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~ 214 (386)
T 3sjl_D 138 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP---DCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI 214 (386)
T ss_dssp CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC---SEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred CCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC---CcceeecCCCceeEEECCCCCEEEEECCCCCeEEE
Confidence 356789998886 67763221121111111111111111110 01111233555566888899888776654343311
Q ss_pred CCCCCCcCceeeeecccCCeeEEEEEeCCCeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCC-CcEEEEEe
Q 011336 304 GEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKS-HLAVQVCA 382 (488)
Q Consensus 304 ~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~-~~i~~v~~ 382 (488)
.......|...+.+. +. .......+.++++.+|+||..-..... .....+..+ +.. ........
T Consensus 215 -~~~~~~~~~~~~~~~----~~-~~~~~dG~~~~vs~~g~V~v~d~~~~~-------~~v~~~~~~--~~~~~~~~g~~p 279 (386)
T 3sjl_D 215 -THTEVFHPEDEFLIN----HP-AYSQKAGRLVWPTYTGKIHQIDLSSGD-------AKFLPAVEA--LTEAERADGWRP 279 (386)
T ss_dssp -EECCCCSCTTSCBCS----CC-EEETTTTEEEEEBTTSEEEEEECTTSS-------CEECCCEES--SCHHHHHTTEEE
T ss_pred -eecceeccccccccc----cc-eeEcCCCcEEEEeCCCEEEEEECCCCc-------ceeecceec--cccccccccccC
Confidence 000000010000000 11 112234466778888999987432100 000001000 000 00001223
Q ss_pred eCCeEEEEEcC-CcEEEEEcCCCCCCCCCCCCCCCceecceEcCccCCCCEEEEEecC-CeEEEEEcCCC--EEEE
Q 011336 383 RKRKTFVLVDT-GSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGL-YHTVVVTDRGR--LFGF 454 (488)
Q Consensus 383 G~~~t~~lt~~-G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~v~~G~-~ht~~l~~~G~--v~~w 454 (488)
+....++++.+ +++|+--... + .+.. ...-..-..++.-..+.+..|..|. -+.++++.||+ +|+-
T Consensus 280 ~g~q~~a~~~~~~~lyV~~~~~-~---~~~h--k~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~t 349 (386)
T 3sjl_D 280 GGWQQVAYHRALDRIYLLVDQR-D---EWRH--KTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYAL 349 (386)
T ss_dssp CSSSCEEEETTTTEEEEEEEEC-C---TTCT--TSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEE
T ss_pred CCcceeeECCCCCeEEEEeccc-c---cccc--CCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEE
Confidence 44455666644 5566632110 1 1111 1111122233333455677777774 45899999987 5653
No 87
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=43.79 E-value=1.8e+02 Score=25.98 Aligned_cols=19 Identities=5% Similarity=-0.017 Sum_probs=13.8
Q ss_pred CceeEeeeCCcEEEEeCCC
Q 011336 120 RYHTLLISNSSVFSCGSSL 138 (488)
Q Consensus 120 ~~h~~~l~~g~vy~wG~n~ 138 (488)
..|+++..++++|++|-..
T Consensus 104 ~~~~~~~~~~~lyv~GG~~ 122 (301)
T 2vpj_A 104 GLAGATTLGDMIYVSGGFD 122 (301)
T ss_dssp BSCEEEEETTEEEEECCBC
T ss_pred cceeEEEECCEEEEEcccC
Confidence 3566666789999998543
No 88
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=43.60 E-value=2.2e+02 Score=27.02 Aligned_cols=125 Identities=19% Similarity=0.199 Sum_probs=68.2
Q ss_pred EEecCCeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCce-eecCCCCCCCEEEEEeC-----CCeEEEEEcCCcEEEec
Q 011336 221 VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPK-SIAPLEEVGSVVQIAAG-----PSYMLAVTGNGVVYSFG 294 (488)
Q Consensus 221 V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~-~i~~~~~~~~i~~i~~G-----~~~~~~lt~~G~v~~wG 294 (488)
++.+..+.+++|+.|++|.+-....-..|. ...-.|. .+-.+...++|+.+..- ..+.+++|++|.+.-.-
T Consensus 53 ~~~t~d~ll~fT~~G~~~~~~~~eip~~~r---~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~ 129 (370)
T 3l6v_A 53 LVNTHDTLLTFTSSGKVFWLPVHQLPEAGS---NARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTP 129 (370)
T ss_dssp EECTTCEEEEEETTSEEEEEEGGGSCBCCT---TSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEE
T ss_pred EecCCCEEEEEeCCCeEEEEEHHHCcCCCc---ccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeE
Confidence 345666688899999999885433211111 1111111 11123344788888764 34788999999887765
Q ss_pred CCCCCccCCCCCCCCcCceeeeecccCCeeEEE--EEeCCCeEEEEeCCCcEEEEecCCCCCCC
Q 011336 295 SGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVR--VSAGDEHVVALDSSGYVYTWGKGYCGALG 356 (488)
Q Consensus 295 ~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~--i~~g~~h~~~lt~~G~vy~wG~n~~gqlG 356 (488)
...+-... ..-.....+.. +..++. +..+..+.+++|++|++..+-...--.+|
T Consensus 130 l~e~~~~~-------~~G~~ai~L~~-~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~g 185 (370)
T 3l6v_A 130 LSEFAFRL-------ARGKIAINLDE-GDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMG 185 (370)
T ss_dssp GGGGCSCC-------TTCEESSCCCT-TCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred HHHhhccc-------CCceEEEEeCC-CCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccC
Confidence 44432110 01111111211 223333 33466788899999999988655444343
No 89
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=43.29 E-value=1.6e+02 Score=25.39 Aligned_cols=16 Identities=19% Similarity=0.229 Sum_probs=9.7
Q ss_pred eEEEEEcCCcEEEEEc
Q 011336 386 KTFVLVDTGSVYGFGW 401 (488)
Q Consensus 386 ~t~~lt~~G~vy~wG~ 401 (488)
..+++..+|.+|+-..
T Consensus 195 ~~i~~d~~g~l~v~~~ 210 (270)
T 1rwi_B 195 WGIAVDEAGTVYVTEH 210 (270)
T ss_dssp EEEEECTTCCEEEEET
T ss_pred eEEEECCCCCEEEEEC
Confidence 3456666677776553
No 90
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=42.04 E-value=2.2e+02 Score=26.55 Aligned_cols=154 Identities=11% Similarity=0.052 Sum_probs=78.7
Q ss_pred EEecCCeeEEE---EeCCcEEEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeC---CCeEEEEEcCCcEEEec
Q 011336 221 VTAGLNFTGFL---TIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG---PSYMLAVTGNGVVYSFG 294 (488)
Q Consensus 221 V~~G~~h~~~l---t~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G---~~~~~~lt~~G~v~~wG 294 (488)
+++...+..++ ..+|.|+.|-....|++.. ..+ .+.. ....|..++.. ....+.-..+|.|..|-
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~------~~~-~~~~--h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~ 110 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDK------NVP-LVCG--HTAPVLDIAWCPHNDNVIASGSEDCTVMVWE 110 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCT------TCC-CBCC--CSSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCC------CCc-eEec--CCCCEEEEEeCCCCCCEEEEEeCCCeEEEEE
Confidence 44455554444 4579999997655544310 011 1111 11467777764 34555666789999997
Q ss_pred CCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCCC---eEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeec-
Q 011336 295 SGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE---HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLS- 370 (488)
Q Consensus 295 ~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~---h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~- 370 (488)
....+... ....+. ..+......|..++.... ..+.-..||.|+.|-..... ....+.
T Consensus 111 ~~~~~~~~-----~~~~~~--~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~ 172 (402)
T 2aq5_A 111 IPDGGLVL-----PLREPV--ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-----------AVLTLGP 172 (402)
T ss_dssp CCTTCCSS-----CBCSCS--EEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-----------EEEEECT
T ss_pred ccCCCCcc-----ccCCce--EEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-----------ccEEEec
Confidence 65432110 011121 112222335766666544 33445788999999753211 011110
Q ss_pred CCCCCcEEEEEee--CCeEEEEEcCCcEEEEEc
Q 011336 371 SLKSHLAVQVCAR--KRKTFVLVDTGSVYGFGW 401 (488)
Q Consensus 371 ~~~~~~i~~v~~G--~~~t~~lt~~G~vy~wG~ 401 (488)
......|..++.. ....+.-..||.|+.|--
T Consensus 173 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp TTCCSCEEEEEECTTSSCEEEEETTSEEEEEET
T ss_pred CCCCCceEEEEECCCCCEEEEEecCCcEEEEeC
Confidence 1123346666553 334444557888888874
No 91
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=41.71 E-value=2.2e+02 Score=26.49 Aligned_cols=101 Identities=13% Similarity=-0.027 Sum_probs=53.3
Q ss_pred eEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCCC---eEEEEeCCCcEEEEecCCCCCCC
Q 011336 280 YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE---HVVALDSSGYVYTWGKGYCGALG 356 (488)
Q Consensus 280 ~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~---h~~~lt~~G~vy~wG~n~~gqlG 356 (488)
+.++-..+|.|..|-..... .+..+. ......|..++.... ..+.-..+|.|+.|-.....+
T Consensus 261 ~l~~~~~dg~i~i~d~~~~~-----------~~~~~~--~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~-- 325 (420)
T 3vl1_A 261 YVIAGHVSGVITVHNVFSKE-----------QTIQLP--SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC-- 325 (420)
T ss_dssp EEEEEETTSCEEEEETTTCC-----------EEEEEC--CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--
T ss_pred EEEEEcCCCeEEEEECCCCc-----------eeEEcc--cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC--
Confidence 44555678888888543211 111111 112235666666444 455567889999996543111
Q ss_pred CCCCCCcccceeecCCCCCcEEEEEeeCCeEEEE-EcCCcEEEEEcCC
Q 011336 357 HGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVL-VDTGSVYGFGWMG 403 (488)
Q Consensus 357 ~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~t~~l-t~~G~vy~wG~n~ 403 (488)
....+.......|..+.......++. ..||.|..|--..
T Consensus 326 --------~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 326 --------PVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp --------CSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred --------chhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence 01122222334566666655554444 3578899998543
No 92
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=40.15 E-value=2.1e+02 Score=25.88 Aligned_cols=241 Identities=12% Similarity=-0.007 Sum_probs=116.7
Q ss_pred CEEEEEeCCc--eeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEec----CCeeEEEEeCCcE
Q 011336 164 HVVQVSASEN--HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG----LNFTGFLTIRGHV 237 (488)
Q Consensus 164 ~i~~i~~G~~--~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G----~~h~~~lt~~G~v 237 (488)
.|..++.... ..+.-..||.|+.|-.... .......+.. ....|..++.. ....+.-..||.|
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE----------THKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEETT----------EEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCCC----------cceeeeEecC-CCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 4666655433 3333346888888854320 0001111111 12356677653 4455556778999
Q ss_pred EEEECCCCCccCCCCCCCCCCceeecCC-CCCCCEEEEEeCC----CeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCc
Q 011336 238 HTCGSNTHGQLGHGDTLDRPTPKSIAPL-EEVGSVVQIAAGP----SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQP 312 (488)
Q Consensus 238 y~wG~n~~gqlG~~~~~~~~~p~~i~~~-~~~~~i~~i~~G~----~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p 312 (488)
..|-.... ....+..+ .....|..++... ...+....+|.|..|-...... ..+
T Consensus 82 ~iwd~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---------~~~ 140 (379)
T 3jrp_A 82 LIWKEENG------------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---------TSP 140 (379)
T ss_dssp EEEEEETT------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC---------CCE
T ss_pred EEEEcCCC------------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc---------eee
Confidence 99943211 00011111 1124677777653 3566677889999986543211 111
Q ss_pred eeeeecccCCeeEEEEEeCC---------------CeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcE
Q 011336 313 RAIQTFRRKGIHVVRVSAGD---------------EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLA 377 (488)
Q Consensus 313 ~~i~~~~~~~~~i~~i~~g~---------------~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i 377 (488)
..+. .....|..++... ...++-..+|.|+.|-..... ....+..........|
T Consensus 141 ~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~h~~~v 209 (379)
T 3jrp_A 141 IIID---AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------QTYVLESTLEGHSDWV 209 (379)
T ss_dssp EEEE---CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT--------TEEEEEEEECCCSSCE
T ss_pred EEec---CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC--------cceeeEEEEecccCcE
Confidence 1111 1222455555433 344556788999998643211 0011111111123346
Q ss_pred EEEEeeCC-----eEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceEcCccCCCCEEEEEecC--CeEEEEEcCCC
Q 011336 378 VQVCARKR-----KTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGL--YHTVVVTDRGR 450 (488)
Q Consensus 378 ~~v~~G~~-----~t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~v~~G~--~ht~~l~~~G~ 450 (488)
..++.... ..+....||.|..|-...... ...............|..++... ...++...||.
T Consensus 210 ~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~----------~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 279 (379)
T 3jrp_A 210 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG----------PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK 279 (379)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS----------CCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSS
T ss_pred eEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc----------cceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCc
Confidence 66666543 344456789999997543110 00001111111233566666543 34444567899
Q ss_pred EEEEeCC
Q 011336 451 LFGFGDN 457 (488)
Q Consensus 451 v~~wG~n 457 (488)
|+.|=.+
T Consensus 280 i~iw~~~ 286 (379)
T 3jrp_A 280 VTLWKEN 286 (379)
T ss_dssp EEEEEEE
T ss_pred EEEEeCC
Confidence 8888654
No 93
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=40.12 E-value=1.9e+02 Score=25.33 Aligned_cols=228 Identities=9% Similarity=0.043 Sum_probs=115.3
Q ss_pred CEEEEEe-CCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEe--cCCeeEEEEeCCcEEEE
Q 011336 164 HVVQVSA-SENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLNFTGFLTIRGHVHTC 240 (488)
Q Consensus 164 ~i~~i~~-G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~--G~~h~~~lt~~G~vy~w 240 (488)
.|..++. .+...+.-..||.|+.|-.... .....+.. ....|..++. ...+.+.-..+|.|..|
T Consensus 20 ~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~------------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 20 DVRDVVAVDDSKVASVSRDGTVRLWSKDDQ------------WLGTVVYT-GQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp CEEEEEEEETTEEEEEETTSEEEEEEESSS------------EEEEEEEE-CSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred CcEEEEecCCCEEEEEEcCCcEEEEECCCC------------EEEEEeec-CCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 5666654 2334555567899999964331 01111111 1223444443 33445555677888877
Q ss_pred ECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeeccc
Q 011336 241 GSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRR 320 (488)
Q Consensus 241 G~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~ 320 (488)
-..... .......+.. ....|..++......+.-..+|.|..|-. + ..+..+..
T Consensus 87 ~~~~~~--------~~~~~~~~~~--~~~~i~~~~~~~~~l~~~~~d~~i~~~d~---~-------------~~~~~~~~ 140 (313)
T 3odt_A 87 PLFATS--------GEDPLYTLIG--HQGNVCSLSFQDGVVISGSWDKTAKVWKE---G-------------SLVYNLQA 140 (313)
T ss_dssp ETTCCT--------TSCC-CEECC--CSSCEEEEEEETTEEEEEETTSEEEEEET---T-------------EEEEEEEC
T ss_pred EeeecC--------CCCcccchhh--cccCEEEEEecCCEEEEEeCCCCEEEEcC---C-------------cEEEeccc
Confidence 432211 0000111111 12568888887777888888999999941 0 11111111
Q ss_pred CCeeEEEEEe---CCCeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEee-CCeEEEEEcCCcE
Q 011336 321 KGIHVVRVSA---GDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR-KRKTFVLVDTGSV 396 (488)
Q Consensus 321 ~~~~i~~i~~---g~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G-~~~t~~lt~~G~v 396 (488)
....+..+.. .....+....+|.|+.|-.. .....+.......|..++.. ....++-..+|.|
T Consensus 141 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~-------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i 207 (313)
T 3odt_A 141 HNASVWDAKVVSFSENKFLTASADKTIKLWQND-------------KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLI 207 (313)
T ss_dssp CSSCEEEEEEEETTTTEEEEEETTSCEEEEETT-------------EEEEEECSSCSSCEEEEEEEETTEEEEEETTSEE
T ss_pred CCCceeEEEEccCCCCEEEEEECCCCEEEEecC-------------ceEEEEeccCcccEEEEEEcCCCeEEEccCCCeE
Confidence 2224444433 45566667888999998511 01111222133345555443 2235556678999
Q ss_pred EEEEcCCCCCCCCCCCCCCCceecceEcCccCCCCEEEEEecCC-eEEEEEcCCCEEEEeCCC
Q 011336 397 YGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLY-HTVVVTDRGRLFGFGDNE 458 (488)
Q Consensus 397 y~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~v~~G~~-ht~~l~~~G~v~~wG~n~ 458 (488)
+.|-...... ...+. .....|..++.... ..++...||.|+.|-...
T Consensus 208 ~i~d~~~~~~--------------~~~~~-~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~ 255 (313)
T 3odt_A 208 KLVDMHTGDV--------------LRTYE-GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKEN 255 (313)
T ss_dssp EEEETTTCCE--------------EEEEE-CCSSCEEEEEECTTSCEEEEETTSEEEEECTTT
T ss_pred EEEECCchhh--------------hhhhh-cCCceEEEEEEecCCCEEEEecCCEEEEEECCC
Confidence 9997432110 01111 12235666665433 455566788888885443
No 94
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=39.29 E-value=92 Score=28.31 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=13.6
Q ss_pred CceeEeeeCCcEEEEeCC
Q 011336 120 RYHTLLISNSSVFSCGSS 137 (488)
Q Consensus 120 ~~h~~~l~~g~vy~wG~n 137 (488)
..|+++..++++|++|-.
T Consensus 140 ~~~~~~~~~~~iyv~GG~ 157 (315)
T 4asc_A 140 YGHTVLSHMDLVYVIGGK 157 (315)
T ss_dssp BSCEEEEETTEEEEECCB
T ss_pred cceeEEEECCEEEEEeCC
Confidence 356666688999999964
No 95
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=38.68 E-value=3.5e+02 Score=27.97 Aligned_cols=191 Identities=9% Similarity=-0.036 Sum_probs=91.9
Q ss_pred CEEEEEe--CCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecC--CeeEEEEeCCcEEE
Q 011336 164 HVVQVSA--SENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL--NFTGFLTIRGHVHT 239 (488)
Q Consensus 164 ~i~~i~~--G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~--~h~~~lt~~G~vy~ 239 (488)
.|..++. .+...+.-..+|.|+.|-......+ ..+.. ....|..++... .+.+.-..+|.|..
T Consensus 57 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~------------~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~v 123 (814)
T 3mkq_A 57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV------------VDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKL 123 (814)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEE------------EEEEC-CSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred cEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE------------EEEec-CCCCEEEEEEeCCCCEEEEEcCCCEEEE
Confidence 4555544 3445566677899999965542111 11111 122355555432 33444567888988
Q ss_pred EECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC---CeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeee
Q 011336 240 CGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP---SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQ 316 (488)
Q Consensus 240 wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~---~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~ 316 (488)
|-...... ....+... ...|..++... ...+.-..+|.|..|-..... ....+.
T Consensus 124 w~~~~~~~----------~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-----------~~~~~~ 180 (814)
T 3mkq_A 124 WNWENNWA----------LEQTFEGH--EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----------PNFTLT 180 (814)
T ss_dssp EEGGGTSE----------EEEEEECC--SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-----------CSEEEE
T ss_pred EECCCCce----------EEEEEcCC--CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------ceeEEe
Confidence 84321100 11111111 14576666543 345556678999999643211 111111
Q ss_pred ecccCCeeEEEEEe--CCCeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEeeC--CeEEEEEc
Q 011336 317 TFRRKGIHVVRVSA--GDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARK--RKTFVLVD 392 (488)
Q Consensus 317 ~~~~~~~~i~~i~~--g~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~--~~t~~lt~ 392 (488)
............+. .....+.-..+|.|+.|-... + .....+.. ....|..++... ...+.-..
T Consensus 181 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~----------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 248 (814)
T 3mkq_A 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT-K----------SCVATLEG-HMSNVSFAVFHPTLPIIISGSE 248 (814)
T ss_dssp CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT-T----------EEEEEEEC-CSSCEEEEEECSSSSEEEEEET
T ss_pred cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC-C----------cEEEEEcC-CCCCEEEEEEcCCCCEEEEEeC
Confidence 11111122333332 333445557788999996432 1 01111211 122455555443 33455567
Q ss_pred CCcEEEEEcC
Q 011336 393 TGSVYGFGWM 402 (488)
Q Consensus 393 ~G~vy~wG~n 402 (488)
||.|+.|-..
T Consensus 249 dg~v~vwd~~ 258 (814)
T 3mkq_A 249 DGTLKIWNSS 258 (814)
T ss_dssp TSCEEEEETT
T ss_pred CCeEEEEECC
Confidence 8999999743
No 96
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=37.21 E-value=96 Score=28.22 Aligned_cols=17 Identities=12% Similarity=0.344 Sum_probs=12.5
Q ss_pred ceeEeeeCCcEEEEeCC
Q 011336 121 YHTLLISNSSVFSCGSS 137 (488)
Q Consensus 121 ~h~~~l~~g~vy~wG~n 137 (488)
.|++++.+++||++|-.
T Consensus 49 ~~~~~~~~~~lyv~GG~ 65 (318)
T 2woz_A 49 HSSIVTQQNQVYVVGGL 65 (318)
T ss_dssp EEEEECSSSCEEEEESS
T ss_pred ceEEEEECCEEEEECCc
Confidence 35555588999999963
No 97
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=37.15 E-value=2.4e+02 Score=25.58 Aligned_cols=17 Identities=12% Similarity=0.165 Sum_probs=11.9
Q ss_pred eeEEEEcCCcEEEEeCC
Q 011336 174 HAAFVLQSGQVFTCGDN 190 (488)
Q Consensus 174 ~~~~lt~~G~vy~wG~n 190 (488)
+.++++.+|++|.....
T Consensus 94 ~gia~d~~g~l~v~d~~ 110 (329)
T 3fvz_A 94 HGLSIDTDGNYWVTDVA 110 (329)
T ss_dssp EEEEECTTSCEEEEETT
T ss_pred eEEEECCCCCEEEEECC
Confidence 45777778888877654
No 98
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=36.94 E-value=4.7e+02 Score=28.89 Aligned_cols=184 Identities=10% Similarity=-0.018 Sum_probs=85.4
Q ss_pred CeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC-CeEEEEEcCCcEEEecCCCCCccCCC
Q 011336 226 NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP-SYMLAVTGNGVVYSFGSGSNFCLGHG 304 (488)
Q Consensus 226 ~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~-~~~~~lt~~G~v~~wG~n~~gqlG~~ 304 (488)
.+.+.-..||.|..|-..... .+........|..++... ...++...+|.|+.|-....-
T Consensus 1016 ~~l~s~~~dg~i~vwd~~~~~--------------~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~----- 1076 (1249)
T 3sfz_A 1016 KTLISSSEDSVIQVWNWQTGD--------------YVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGR----- 1076 (1249)
T ss_dssp SCEEEECSSSBEEEEETTTTE--------------EECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTC-----
T ss_pred CEEEEEcCCCEEEEEECCCCc--------------eEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCc-----
Confidence 344445678899999543211 111111124566665543 455666788899999653311
Q ss_pred CCCCCcCceeeeecccCCeeEEEEEeC--CCeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEe
Q 011336 305 EQHDELQPRAIQTFRRKGIHVVRVSAG--DEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCA 382 (488)
Q Consensus 305 ~~~~~~~p~~i~~~~~~~~~i~~i~~g--~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~ 382 (488)
....+. .....|..++.. ....+.-..+|.|+.|-......+ ..+. .....|..++.
T Consensus 1077 ------~~~~~~---~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~-----------~~l~-~h~~~v~~~~~ 1135 (1249)
T 3sfz_A 1077 ------IERDFT---CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL-----------HELK-GHNGCVRCSAF 1135 (1249)
T ss_dssp ------CCEEEE---CCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCS-----------BCCC-CCSSCEEEEEE
T ss_pred ------eeEEEc---ccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCccee-----------eeec-cCCCcEEEEEE
Confidence 011111 111123333332 223444566777777754321111 0011 11223555554
Q ss_pred eCC--eEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceEcC---ccCCCCEEEEEecCCeEEEEEcCCCEEEEeCC
Q 011336 383 RKR--KTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILD---SLRAHHVSQISTGLYHTVVVTDRGRLFGFGDN 457 (488)
Q Consensus 383 G~~--~t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~---~~~~~~v~~v~~G~~ht~~l~~~G~v~~wG~n 457 (488)
... ..+.-..||.|+.|-......+.. ..|.... ......|..++.......+++.+|.|..|-..
T Consensus 1136 s~dg~~lat~~~dg~i~vwd~~~~~~~~~---------~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g~v~vwd~~ 1206 (1249)
T 3sfz_A 1136 SLDGILLATGDDNGEIRIWNVSDGQLLHS---------CAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVA 1206 (1249)
T ss_dssp CSSSSEEEEEETTSCCCEEESSSSCCCCC---------CCCCC-------CCSCCCEEEECTTSSCEEEESSSEEEBCSS
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCceEEE---------eccccccccccccCceEEEEEECCCCCEEEECCCeEEEEECC
Confidence 332 333345678888887543222211 0111110 11223466666665555555556888888655
Q ss_pred C
Q 011336 458 E 458 (488)
Q Consensus 458 ~ 458 (488)
.
T Consensus 1207 ~ 1207 (1249)
T 3sfz_A 1207 T 1207 (1249)
T ss_dssp S
T ss_pred C
Confidence 4
No 99
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=36.78 E-value=2.7e+02 Score=26.05 Aligned_cols=27 Identities=22% Similarity=0.301 Sum_probs=13.8
Q ss_pred CEEEEEeCCceeEEE--EcCCcEEEEeCC
Q 011336 164 HVVQVSASENHAAFV--LQSGQVFTCGDN 190 (488)
Q Consensus 164 ~i~~i~~G~~~~~~l--t~~G~vy~wG~n 190 (488)
.|..++......+++ ..+|.|+.|-..
T Consensus 171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~ 199 (433)
T 3bws_A 171 FVETISIPEHNELWVSQMQANAVHVFDLK 199 (433)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETT
T ss_pred ceeEEEEcCCCEEEEEECCCCEEEEEECC
Confidence 455555533222222 346788888543
No 100
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=36.76 E-value=2.5e+02 Score=25.75 Aligned_cols=158 Identities=15% Similarity=0.063 Sum_probs=75.4
Q ss_pred CCEEEEEeCCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCCCeEEEE---eCCCcEE
Q 011336 269 GSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVAL---DSSGYVY 345 (488)
Q Consensus 269 ~~i~~i~~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~l---t~~G~vy 345 (488)
..|..++...+..++. .++.|+.|-.....++ +..+.. ...+..++. ..+++ ..+|.|.
T Consensus 101 ~~v~~v~~~~~~~~~~-~~~~i~i~d~~~~~~~-------------~~~~~~-~~~~~~~s~---~~la~~sg~~~g~v~ 162 (355)
T 3vu4_A 101 APVKDLFLSREFIVVS-YGDVISVFKFGNPWKR-------------ITDDIR-FGGVCEFSN---GLLVYSNEFNLGQIH 162 (355)
T ss_dssp SCEEEEEECSSEEEEE-ETTEEEEEESSTTCCB-------------SSCCEE-EEEEEEEET---TEEEEEESSCTTCEE
T ss_pred CceEEEEEcCCEEEEE-EcCEEEEEECCCCcee-------------eEEecc-CCceEEEEc---cEEEEeCCCcCcEEE
Confidence 5788888877665544 5788999965442110 000000 112344443 33333 5789999
Q ss_pred EEecCCCCCCCCCCC---CCcccc-eeecCCCCCcEEEEEeeCCe--EEEEEcCCc-EEEEEcCCCCCCCCCCCCCCCce
Q 011336 346 TWGKGYCGALGHGDE---IDKTLP-EPLSSLKSHLAVQVCARKRK--TFVLVDTGS-VYGFGWMGFGSLGFPDRGVSDKV 418 (488)
Q Consensus 346 ~wG~n~~gqlG~~~~---~~~~~p-~~v~~~~~~~i~~v~~G~~~--t~~lt~~G~-vy~wG~n~~gqLG~~~~~~~~~~ 418 (488)
.|-.....+...... .....| .....-....|..++....- .+.-..||. |..|-.....
T Consensus 163 iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~------------- 229 (355)
T 3vu4_A 163 ITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV------------- 229 (355)
T ss_dssp EEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC-------------
T ss_pred EEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc-------------
Confidence 997654322111100 001122 11111223356666664433 333456787 8888743211
Q ss_pred ecceEcC-ccCCCCEEEEEecC--CeEEEEEcCCCEEEEeCCC
Q 011336 419 LRPRILD-SLRAHHVSQISTGL--YHTVVVTDRGRLFGFGDNE 458 (488)
Q Consensus 419 ~~P~~v~-~~~~~~v~~v~~G~--~ht~~l~~~G~v~~wG~n~ 458 (488)
....+. ......|..++... .+.+.-..||+|..|-...
T Consensus 230 -~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 230 -LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp -EEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred -EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence 011121 11234576776653 3444556788999997544
No 101
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=36.49 E-value=3.9e+02 Score=27.81 Aligned_cols=198 Identities=12% Similarity=0.004 Sum_probs=97.4
Q ss_pred CEEEEEeCC--ceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEec----CCeeEEEEeCCcE
Q 011336 164 HVVQVSASE--NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG----LNFTGFLTIRGHV 237 (488)
Q Consensus 164 ~i~~i~~G~--~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G----~~h~~~lt~~G~v 237 (488)
.|..++... ...+.-..||.|..|-.... .......+.. ....|..|+.. ....+.-..||.|
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~----------~~~~~~~l~~-h~~~V~~l~~s~~~~~~~l~s~s~Dg~I 79 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE----------THKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKV 79 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEETT----------EEEEEEEECC-CSSCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCCC----------CCccceeccC-CcCceEEEEecCCCCCCEEEEEeCCCeE
Confidence 355554432 23333456898988853310 0001111111 12356777653 3455556778999
Q ss_pred EEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC----CeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCce
Q 011336 238 HTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP----SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPR 313 (488)
Q Consensus 238 y~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~----~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~ 313 (488)
+.|-..... ......+. .....|..++... ...+.-..+|.|..|-...... ..+.
T Consensus 80 ~vwd~~~~~---------~~~~~~~~--~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~---------~~~~ 139 (753)
T 3jro_A 80 LIWKEENGR---------WSQIAVHA--VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---------TSPI 139 (753)
T ss_dssp EEEEEETTE---------EEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC---------CCCE
T ss_pred EEEECCCCc---------cccccccc--CCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC---------ccee
Confidence 999532110 00011111 1124677777653 4666777889999996543211 1111
Q ss_pred eeeecccCCeeEEEEEeCC---------------CeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEE
Q 011336 314 AIQTFRRKGIHVVRVSAGD---------------EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAV 378 (488)
Q Consensus 314 ~i~~~~~~~~~i~~i~~g~---------------~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~ 378 (488)
.+.. ....|..++... ...+.-..+|.|..|-..... ....+..........|.
T Consensus 140 ~~~~---~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~--------~~~~~~~~~~~h~~~V~ 208 (753)
T 3jro_A 140 IIDA---HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------QTYVLESTLEGHSDWVR 208 (753)
T ss_dssp EEEC---CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT--------TEEEEEEEECCCSSCEE
T ss_pred Eeec---CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc--------ccceeeeeecCCCCcEE
Confidence 1111 122455555433 344555778999988653211 00111111111233577
Q ss_pred EEEeeCC-----eEEEEEcCCcEEEEEcCC
Q 011336 379 QVCARKR-----KTFVLVDTGSVYGFGWMG 403 (488)
Q Consensus 379 ~v~~G~~-----~t~~lt~~G~vy~wG~n~ 403 (488)
.++.... ..+.-..||.|+.|-...
T Consensus 209 ~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 209 DVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp EEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred EEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 7766543 344455789999997543
No 102
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=36.47 E-value=1.1e+02 Score=24.17 Aligned_cols=104 Identities=14% Similarity=0.037 Sum_probs=51.1
Q ss_pred EEEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEE-ecCCeeEEEEeCCcEEEEECCC
Q 011336 166 VQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVT-AGLNFTGFLTIRGHVHTCGSNT 244 (488)
Q Consensus 166 ~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~-~G~~h~~~lt~~G~vy~wG~n~ 244 (488)
.--.|...+.+-+..||+|-...... ..........+.. .++.|. .-..+.+++..+|+||.--..
T Consensus 9 ~~~~~~~g~~L~I~~dG~V~Gt~~~~--------~~~s~l~~~~v~~----G~V~I~g~~sg~yL~m~~~G~v~Gs~~~- 75 (132)
T 3q7x_A 9 LLRSTETGQFLRINPDGTVDGTRDRS--------DPGIQFQISPEGN----GEVLLRSTETGQFLRINPDGTVDGTRDR- 75 (132)
T ss_dssp EEEETTTCCEEEECTTSBEEEECCTT--------CGGGCEEEEEEET----TEEEEEETTTCCEEEECTTSBEEEECC--
T ss_pred eeeeccCcEEEEECCCCcEEeecCCC--------CCCcEEEEEeccc----CEEEEEEEcccEEEEECCCCCEeeccCC-
Confidence 33456666677778899998664321 0011111222211 233333 234456788899999975211
Q ss_pred CCccCCCCCCCCCCceeecCCCCCCCEEEEE-eCCCeEEEEEcCCcEEEe
Q 011336 245 HGQLGHGDTLDRPTPKSIAPLEEVGSVVQIA-AGPSYMLAVTGNGVVYSF 293 (488)
Q Consensus 245 ~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~-~G~~~~~~lt~~G~v~~w 293 (488)
.+......+.... ...+.+. .-....++++.+|++|.-
T Consensus 76 ---------s~ec~flE~~~~~--~g~v~ikg~~sg~YLamnk~G~lygs 114 (132)
T 3q7x_A 76 ---------SDPGIQFQISPEG--NGEVLLRSTETGQFLRINPDGTVDGT 114 (132)
T ss_dssp ---------CCGGGCEEEEEEE--TTEEEEEETTTCCEEEECTTSBEEEE
T ss_pred ---------CCCceeEEEEeec--CcEEEEEeccCCeEEEECCCCcCcCC
Confidence 1111111111111 1223332 223348899999999963
No 103
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=36.12 E-value=2.4e+02 Score=25.21 Aligned_cols=160 Identities=8% Similarity=-0.076 Sum_probs=82.9
Q ss_pred CCEEEEEeC--Cc-eeEEEEcCCcEEEEeC-CCCCcccCCCCCCceeCCEEecc-CCCCCeEEEEec-CCeeEEEEeCCc
Q 011336 163 AHVVQVSAS--EN-HAAFVLQSGQVFTCGD-NSSFCCGHRDTNRPIFRPRLVEA-LKGVPCKQVTAG-LNFTGFLTIRGH 236 (488)
Q Consensus 163 ~~i~~i~~G--~~-~~~~lt~~G~vy~wG~-n~~gqlG~~~~~~~~~~p~~v~~-~~~~~i~~V~~G-~~h~~~lt~~G~ 236 (488)
..|..++.. +. ..+.-..+|.|+.|-. .. +++ ..+.. .....|..++.. ....+.-..+|.
T Consensus 57 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~------------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~ 123 (342)
T 1yfq_A 57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS-PSF------------QALTNNEANLGICRICKYGDDKLIAASWDGL 123 (342)
T ss_dssp SCEEEEEEEESSSEEEEEEETTSCEEEECSSSS-SSE------------EECBSCCCCSCEEEEEEETTTEEEEEETTSE
T ss_pred CceEEEEECCCCCcEEEEEcCCCeEEEEEeccC-Cce------------EeccccCCCCceEEEEeCCCCEEEEEcCCCe
Confidence 356665543 44 5666677899999965 32 211 11211 012345555543 455566677899
Q ss_pred EEEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeee
Q 011336 237 VHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQ 316 (488)
Q Consensus 237 vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~ 316 (488)
|+.|-...... .. .......+..+.....|..++...+..++-+.+|.|+.|-....+. .......
T Consensus 124 i~iwd~~~~~~---~~--~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---------~~~~~~~ 189 (342)
T 1yfq_A 124 IEVIDPRNYGD---GV--IAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED---------DNGTIEE 189 (342)
T ss_dssp EEEECHHHHTT---BC--EEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT---------CCCEEEE
T ss_pred EEEEccccccc---cc--ccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCcccc---------ccceeee
Confidence 99993221000 00 0000001111112257888888888877788899999997543111 0011111
Q ss_pred ecccCCeeEEEEEeCC---CeEEEEeCCCcEEEEecCC
Q 011336 317 TFRRKGIHVVRVSAGD---EHVVALDSSGYVYTWGKGY 351 (488)
Q Consensus 317 ~~~~~~~~i~~i~~g~---~h~~~lt~~G~vy~wG~n~ 351 (488)
. .....|..++... ...++-..+|.+..|-...
T Consensus 190 ~--~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~ 225 (342)
T 1yfq_A 190 S--GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD 225 (342)
T ss_dssp C--SCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred c--CCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcC
Confidence 1 1122455555543 3445557888888887644
No 104
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=35.34 E-value=2.8e+02 Score=25.79 Aligned_cols=152 Identities=13% Similarity=0.072 Sum_probs=77.3
Q ss_pred EEeCCceeEEE---EcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEec---CCeeEEEEeCCcEEEEE
Q 011336 168 VSASENHAAFV---LQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG---LNFTGFLTIRGHVHTCG 241 (488)
Q Consensus 168 i~~G~~~~~~l---t~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G---~~h~~~lt~~G~vy~wG 241 (488)
+++......++ ..+|.|+.|-.+..+.+.... + .+.. ....|..++.. ....+.-..||.|..|-
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~-------~-~~~~-h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~ 110 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNV-------P-LVCG-HTAPVLDIAWCPHNDNVIASGSEDCTVMVWE 110 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTC-------C-CBCC-CSSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCC-------c-eEec-CCCCEEEEEeCCCCCCEEEEEeCCCeEEEEE
Confidence 44445444444 458999999766544331100 0 0111 12346666653 34444556789999996
Q ss_pred CCCCCccCCCCCCCCCCc-eeecCCCCCCCEEEEEeCCC---eEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeee
Q 011336 242 SNTHGQLGHGDTLDRPTP-KSIAPLEEVGSVVQIAAGPS---YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQT 317 (488)
Q Consensus 242 ~n~~gqlG~~~~~~~~~p-~~i~~~~~~~~i~~i~~G~~---~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~ 317 (488)
....+... ....+ ..+... ...|..++.... ..+.-..+|.|+.|-.... ..+..
T Consensus 111 ~~~~~~~~-----~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~--------------~~~~~ 169 (402)
T 2aq5_A 111 IPDGGLVL-----PLREPVITLEGH--TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG--------------AAVLT 169 (402)
T ss_dssp CCTTCCSS-----CBCSCSEEEECC--SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT--------------EEEEE
T ss_pred ccCCCCcc-----ccCCceEEecCC--CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC--------------CccEE
Confidence 54322110 00011 122211 146777776543 4555567899999965321 11122
Q ss_pred c--ccCCeeEEEEEeC--CCeEEEEeCCCcEEEEec
Q 011336 318 F--RRKGIHVVRVSAG--DEHVVALDSSGYVYTWGK 349 (488)
Q Consensus 318 ~--~~~~~~i~~i~~g--~~h~~~lt~~G~vy~wG~ 349 (488)
+ ......|..++.. ....+.-..+|.|+.|-.
T Consensus 170 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 170 LGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp ECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEET
T ss_pred EecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeC
Confidence 2 1122346666554 234444567888999865
No 105
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=34.14 E-value=2.5e+02 Score=24.94 Aligned_cols=156 Identities=13% Similarity=0.087 Sum_probs=82.9
Q ss_pred eEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEE--EecCCeeEEEEeCCcEEEEECCCCCccCCCC
Q 011336 175 AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQV--TAGLNFTGFLTIRGHVHTCGSNTHGQLGHGD 252 (488)
Q Consensus 175 ~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V--~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~ 252 (488)
++++|++|.+-......++.. .+..-++..+..+ +....+.+++|+.|++|..-.... -.+
T Consensus 5 ~v~lT~~G~iKr~~~~~~~~~-------------~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~el---p~~- 67 (256)
T 1zvt_A 5 TIVLSQMGWVRSAKGHDIDAP-------------GLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITL---PSA- 67 (256)
T ss_dssp EEEEETTSEEEEEESSCCCST-------------TSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGS---CCS-
T ss_pred EEEEeCCCEEEEeeCCcCCce-------------eccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHC---CCc-
Confidence 467888888765543222100 0111122334443 446667899999999999855432 111
Q ss_pred CCCCCCc--eeecCCCCCCCEEEEEeC--CCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEE
Q 011336 253 TLDRPTP--KSIAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRV 328 (488)
Q Consensus 253 ~~~~~~p--~~i~~~~~~~~i~~i~~G--~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i 328 (488)
...-.| ..+ .+...++|+.+... ..+.+++|++|.+.-.-..++-... ..-..+..+.. +..++.+
T Consensus 68 -r~~G~~i~~~i-~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~-------r~G~~~i~L~~-~d~lv~~ 137 (256)
T 1zvt_A 68 -RGQGEPLTGKL-TLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARN-------RAGKALITLPE-NAHVMPP 137 (256)
T ss_dssp -SSCCEEGGGTC-CCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCS-------TTCEECBCCCT-TCCBCCC
T ss_pred -CCCCeEeeeee-cCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccC-------cCceEEEEECC-CCEEEEE
Confidence 111111 122 23444788888763 4457888999987766544331100 11111222221 1133322
Q ss_pred -E--eCCCeEEEEeCCCcEEEEecCCCCCCCC
Q 011336 329 -S--AGDEHVVALDSSGYVYTWGKGYCGALGH 357 (488)
Q Consensus 329 -~--~g~~h~~~lt~~G~vy~wG~n~~gqlG~ 357 (488)
. .+..+.+++|++|++..+-.++.-.+|.
T Consensus 138 ~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 138 VVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 169 (256)
T ss_dssp EECCCTTCEEEEEETTSEEEEEEGGGSCBCSS
T ss_pred EEecCCCCEEEEEcCCCeEEEEEHHHCCCcCc
Confidence 2 2567888899999999888766544443
No 106
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=33.85 E-value=2.8e+02 Score=25.37 Aligned_cols=224 Identities=14% Similarity=0.127 Sum_probs=115.4
Q ss_pred EEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEe-----cCCeeEEEEeCCcEEEEE
Q 011336 167 QVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA-----GLNFTGFLTIRGHVHTCG 241 (488)
Q Consensus 167 ~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~-----G~~h~~~lt~~G~vy~wG 241 (488)
.++.+..+.+++|+.|++|..-..+--..+....+.+ ....+...++.+|+.+.. ...+.+++|++|.+.-.-
T Consensus 48 ~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~--i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~ 125 (307)
T 1zi0_A 48 LVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRP--IVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTV 125 (307)
T ss_dssp EEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEE--GGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEE
T ss_pred EEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeE--hhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEE
Confidence 3556678899999999999987655333332211111 111222234666777654 233577789999887664
Q ss_pred CCCCCccCCCCCCCCCCceeecCCCCCCCEEEEE--eCCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecc
Q 011336 242 SNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIA--AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFR 319 (488)
Q Consensus 242 ~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~--~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~ 319 (488)
..++-.. .........+.+...++.+. .+.++.+++|++|.++.+-..+-...|... .-++...+.
T Consensus 126 l~e~~~~-------~r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a-----~Gv~~i~L~ 193 (307)
T 1zi0_A 126 LTEFNRL-------RTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNT-----TGVRGIRLG 193 (307)
T ss_dssp GGGGTTC-------CTTCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTC-----CCEECCCCC
T ss_pred HHHhhcc-------ccCCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCC-----CCeEeEEeC
Confidence 3222111 01122222222334555443 356789999999999988765544443311 111222222
Q ss_pred cCCeeEEEEEeC--CCeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEe--eCCeEEEEEcCCc
Q 011336 320 RKGIHVVRVSAG--DEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCA--RKRKTFVLVDTGS 395 (488)
Q Consensus 320 ~~~~~i~~i~~g--~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~--G~~~t~~lt~~G~ 395 (488)
.+..|+.+..- ....+++|++|.+-..-...+-.-+.+... ...+. +. -....++.+.. .....+++|++|.
T Consensus 194 -~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG-~~~~~-~~-~~~~~lv~~~~v~~~~~l~~~t~~g~ 269 (307)
T 1zi0_A 194 -EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG-VISIK-VT-ERNGLVVGAVQVDDCDQIMMITDAGT 269 (307)
T ss_dssp -TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCC-EESSC-CC-TTTCSEEEEEEECTTCEEEEEESSCC
T ss_pred -CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCC-EEeeE-ec-CCCCeEEEEEEeCCCceEEEEcCCCc
Confidence 23456666542 234566788886555433333211111110 00111 11 11134544433 5566789999999
Q ss_pred EEEEEcCCCCCCC
Q 011336 396 VYGFGWMGFGSLG 408 (488)
Q Consensus 396 vy~wG~n~~gqLG 408 (488)
+.-+--++....|
T Consensus 270 ~ir~~~~~i~~~~ 282 (307)
T 1zi0_A 270 LVRTRVSEISIVG 282 (307)
T ss_dssp EEEEEGGGSCBCC
T ss_pred EEEEecccccccC
Confidence 9877655543333
No 107
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=33.53 E-value=97 Score=29.75 Aligned_cols=69 Identities=13% Similarity=0.233 Sum_probs=42.9
Q ss_pred CCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceEcCccCCCCEEEEEecCCeEEEEEcCCC
Q 011336 371 SLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGR 450 (488)
Q Consensus 371 ~~~~~~i~~v~~G~~~t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~v~~G~~ht~~l~~~G~ 450 (488)
.++. |.+|+. +...+++.++|.|..|=-....+. .....+ ...+.++.+-....++++.||+
T Consensus 86 ~lp~--V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~~--------------~~~~~~-~~~v~~i~~~~p~~av~~~dG~ 147 (388)
T 1xip_A 86 EIPD--VIFVCF-HGDQVLVSTRNALYSLDLEELSEF--------------RTVTSF-EKPVFQLKNVNNTLVILNSVND 147 (388)
T ss_dssp ECTT--EEEEEE-ETTEEEEEESSEEEEEESSSTTCE--------------EEEEEC-SSCEEEEEECSSEEEEEETTSE
T ss_pred eCCC--eeEEEE-CCCEEEEEcCCcEEEEEchhhhcc--------------Ccccee-ecceeeEEecCCCEEEEECCCC
Confidence 3444 889999 878888889999999874332210 001111 1235555555555777788899
Q ss_pred EEEEeCC
Q 011336 451 LFGFGDN 457 (488)
Q Consensus 451 v~~wG~n 457 (488)
|+.|=-.
T Consensus 148 L~v~dl~ 154 (388)
T 1xip_A 148 LSALDLR 154 (388)
T ss_dssp EEEEETT
T ss_pred EEEEEcc
Confidence 8888443
No 108
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=33.19 E-value=1.3e+02 Score=27.70 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=13.5
Q ss_pred CCeeEEEEeCCcEEEEECC
Q 011336 225 LNFTGFLTIRGHVHTCGSN 243 (488)
Q Consensus 225 ~~h~~~lt~~G~vy~wG~n 243 (488)
..|+++. .+++||++|..
T Consensus 110 ~~~~~~~-~~~~iyv~GG~ 127 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGGV 127 (357)
T ss_dssp SSEEEEE-ETTEEEEEECC
T ss_pred ccceEEE-ECCEEEEEeCc
Confidence 4566666 78999999953
No 109
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=32.44 E-value=3.7e+02 Score=26.40 Aligned_cols=230 Identities=7% Similarity=-0.057 Sum_probs=112.0
Q ss_pred CCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecCCeeEEEEeCCcEEEEECCCCCccCC
Q 011336 171 SENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGH 250 (488)
Q Consensus 171 G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~ 250 (488)
.....+.-+.+|.|+.|-.... .+..........|..++. .. .+.-..+|.|..|-..
T Consensus 308 ~~~~l~~~~~~g~i~~~d~~~~-------------~~~~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~~------- 365 (615)
T 1pgu_A 308 GNGRIISLSLDGTLNFYELGHD-------------EVLKTISGHNKGITALTV-NP-LISGSYDGRIMEWSSS------- 365 (615)
T ss_dssp ETTEEEEEETTSCEEEEETTEE-------------EEEEEECCCSSCEEEEET-TT-TEEEETTSCEEETTTT-------
T ss_pred CCCeEEEEECCCCEEEEECCCC-------------cEEEEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEEch-------
Confidence 4556677778899999854331 111111112345778887 66 6666788999998322
Q ss_pred CCCCCCCCceeecCCCCCCCEEEEEeC-CCeEEEEEcCCcEEEecCCCCCccC-----------------CCCCC---CC
Q 011336 251 GDTLDRPTPKSIAPLEEVGSVVQIAAG-PSYMLAVTGNGVVYSFGSGSNFCLG-----------------HGEQH---DE 309 (488)
Q Consensus 251 ~~~~~~~~p~~i~~~~~~~~i~~i~~G-~~~~~~lt~~G~v~~wG~n~~gqlG-----------------~~~~~---~~ 309 (488)
+ +. ......|..++.. ....+....+|.|..|-........ ..... ..
T Consensus 366 --------~--~~-~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 434 (615)
T 1pgu_A 366 --------S--MH-QDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQS 434 (615)
T ss_dssp --------E--EE-CCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEET
T ss_pred --------h--hc-CcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEec
Confidence 1 11 1112455555553 3344455566666666432110000 00000 00
Q ss_pred cCceeeeecccCCeeEEEEEeCCCeEEEEeC-CCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEee--CCe
Q 011336 310 LQPRAIQTFRRKGIHVVRVSAGDEHVVALDS-SGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR--KRK 386 (488)
Q Consensus 310 ~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~-~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G--~~~ 386 (488)
.....+..+. ....+..++......++-.. +|.|+.|-.... ++ .+..+ ......|..++.. ..+
T Consensus 435 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~-~~---------~~~~~-~~~~~~v~~~~~s~~g~~ 502 (615)
T 1pgu_A 435 FTGDIIKSVR-LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL-EV---------SFDLK-TPLRAKPSYISISPSETY 502 (615)
T ss_dssp TTCCEEEEEE-CSSCEEEEEECSSEEEEEETTTSCEEEEETTEE-EE---------EEECS-SCCSSCEEEEEECTTSSE
T ss_pred cCCceeeecc-cCCCceEEEEcCCEEEEeecCCCeEEEEECCCc-cc---------ccccc-CCccCceEEEEECCCCCE
Confidence 0001111111 12245555555444445566 888888865321 00 00111 1122346666553 344
Q ss_pred EEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceEcCccCCCCEEEEEec------------CCeEEEEEcCCCEEEE
Q 011336 387 TFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTG------------LYHTVVVTDRGRLFGF 454 (488)
Q Consensus 387 t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~v~~G------------~~ht~~l~~~G~v~~w 454 (488)
.+.-..||.|+.|-...... ...+.......|..++.. ....+.-..||.|+.|
T Consensus 503 l~~~~~dg~i~iw~~~~~~~--------------~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw 568 (615)
T 1pgu_A 503 IAAGDVMGKILLYDLQSREV--------------KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIY 568 (615)
T ss_dssp EEEEETTSCEEEEETTTTEE--------------EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEE
T ss_pred EEEcCCCCeEEEeeCCCCcc--------------eeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEE
Confidence 55556789999997432111 111111123456666663 3444455678999999
Q ss_pred eCCCC
Q 011336 455 GDNER 459 (488)
Q Consensus 455 G~n~~ 459 (488)
-....
T Consensus 569 ~~~~~ 573 (615)
T 1pgu_A 569 SVKRP 573 (615)
T ss_dssp ESSCT
T ss_pred ECCCC
Confidence 87654
No 110
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=31.85 E-value=2.7e+02 Score=24.68 Aligned_cols=119 Identities=16% Similarity=0.143 Sum_probs=65.5
Q ss_pred EEeCCCeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEee--CCeEEEEEcCCcEEEEEcCCCC
Q 011336 328 VSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR--KRKTFVLVDTGSVYGFGWMGFG 405 (488)
Q Consensus 328 i~~g~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G--~~~t~~lt~~G~vy~wG~n~~g 405 (488)
.....++.+++|+.|++|..-..+. -.+...-......+...++.+|+.+... ..+.+++|++|.+.-.=-.++-
T Consensus 40 ~~~t~~~ll~~T~~Gr~~~~~~~el---p~~r~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~ 116 (256)
T 1zvt_A 40 KGKSNQPVVFVDSTGRSYAIDPITL---PSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLV 116 (256)
T ss_dssp EEETTSCEEEEETTSEEEEECGGGS---CCSSSCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGC
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHC---CCcCCCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhc
Confidence 3445667889999999999876432 1111111111123333346678888763 3456778899988766543331
Q ss_pred CCCCCCCCCCCceecceEcCcc-CCCCEEEE-E--ecCCeEEEEEcCCCEEEEeCCCC
Q 011336 406 SLGFPDRGVSDKVLRPRILDSL-RAHHVSQI-S--TGLYHTVVVTDRGRLFGFGDNER 459 (488)
Q Consensus 406 qLG~~~~~~~~~~~~P~~v~~~-~~~~v~~v-~--~G~~ht~~l~~~G~v~~wG~n~~ 459 (488)
....+ -..+-.+ .+..++.+ . .+..+.++++++|.+.-+-.++-
T Consensus 117 ~~~r~----------G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ei 164 (256)
T 1zvt_A 117 ARNRA----------GKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDL 164 (256)
T ss_dssp CCSTT----------CEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGS
T ss_pred ccCcC----------ceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHHC
Confidence 11100 0111111 11233332 2 25778999999999888866554
No 111
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=31.82 E-value=2.7e+02 Score=24.56 Aligned_cols=103 Identities=7% Similarity=-0.147 Sum_probs=53.0
Q ss_pred eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeC----CceeEEEEcCCcEEEEeCCCCCcccCCCCCC
Q 011336 127 SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS----ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNR 202 (488)
Q Consensus 127 ~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G----~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~ 202 (488)
.||.|..|=...... . ......+. .....|..++.. ....+.-..||.|..|-......... .
T Consensus 31 ~dg~i~iw~~~~~~~------~--~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~----~ 97 (351)
T 3f3f_A 31 SDQHIKVFKLDKDTS------N--WELSDSWR-AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECS----G 97 (351)
T ss_dssp TTSEEEEEEECSSSC------C--EEEEEEEE-CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTS----S
T ss_pred CCCeEEEEECCCCCC------c--ceecceec-cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccc----c
Confidence 688899996442110 0 00111111 223467777765 34455567799999997655211100 0
Q ss_pred ceeCCEEeccCCCCCeEEEEecC----CeeEEEEeCCcEEEEEC
Q 011336 203 PIFRPRLVEALKGVPCKQVTAGL----NFTGFLTIRGHVHTCGS 242 (488)
Q Consensus 203 ~~~~p~~v~~~~~~~i~~V~~G~----~h~~~lt~~G~vy~wG~ 242 (488)
....+..........|..++... .+.+.-..+|.|+.|=.
T Consensus 98 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~ 141 (351)
T 3f3f_A 98 RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA 141 (351)
T ss_dssp CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEEC
T ss_pred cCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecC
Confidence 00111111111234577776653 45566678899999954
No 112
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=30.73 E-value=2.9e+02 Score=24.68 Aligned_cols=17 Identities=12% Similarity=0.345 Sum_probs=11.8
Q ss_pred eEEEEEcCCC-EEEEeCC
Q 011336 441 HTVVVTDRGR-LFGFGDN 457 (488)
Q Consensus 441 ht~~l~~~G~-v~~wG~n 457 (488)
+.+++..||+ +|.-..+
T Consensus 317 ~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 317 NSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEEEECTTSCEEEEEEEC
T ss_pred CeEEEcCCCCEEEEEEcc
Confidence 5677888888 6665544
No 113
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=30.07 E-value=1.6e+02 Score=26.59 Aligned_cols=17 Identities=6% Similarity=0.114 Sum_probs=13.2
Q ss_pred ceeEeeeCCcEEEEeCC
Q 011336 121 YHTLLISNSSVFSCGSS 137 (488)
Q Consensus 121 ~h~~~l~~g~vy~wG~n 137 (488)
.|+++..++++|++|-.
T Consensus 102 ~~~~~~~~~~iyv~GG~ 118 (318)
T 2woz_A 102 LFGLGEVDDKIYVVAGK 118 (318)
T ss_dssp SCEEEEETTEEEEEEEE
T ss_pred ccceEEECCEEEEEcCc
Confidence 56666688999999954
No 114
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=29.70 E-value=3.4e+02 Score=25.17 Aligned_cols=203 Identities=12% Similarity=0.015 Sum_probs=85.8
Q ss_pred EEEEEeCC--ceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEec--CCeeEEEEeCCcEEEE
Q 011336 165 VVQVSASE--NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHTC 240 (488)
Q Consensus 165 i~~i~~G~--~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G--~~h~~~lt~~G~vy~w 240 (488)
|..++... ...+.-..||.|..|-...... ...+.. ....|..++.. ..+.+.-..||.|..|
T Consensus 126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~------------~~~~~~-h~~~v~~~~~~p~~~~l~s~s~d~~v~iw 192 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKI------------VMILQG-HEQDIYSLDYFPSGDKLVSGSGDRTVRIW 192 (393)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEE------------EEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCCcE------------EEEEcc-CCCCEEEEEEcCCCCEEEEecCCCcEEEE
Confidence 55665543 3333445678888885433100 011111 12235555542 2344445678889998
Q ss_pred ECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC---CeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeee
Q 011336 241 GSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP---SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQT 317 (488)
Q Consensus 241 G~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~---~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~ 317 (488)
-... ++ ....+. ....+..++... ...+.-..+|.|..|-......+. ... .....
T Consensus 193 d~~~-~~----------~~~~~~---~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~------~~~-~~~~~ 251 (393)
T 1erj_A 193 DLRT-GQ----------CSLTLS---IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE------RLD-SENES 251 (393)
T ss_dssp ETTT-TE----------EEEEEE---CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEE------EEC------
T ss_pred ECCC-Ce----------eEEEEE---cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE------eec-ccccC
Confidence 4321 11 011111 113465555532 345555678888888543211100 000 00000
Q ss_pred cccCCeeEEEEEeCCC--eEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEeeC--CeEEEEEcC
Q 011336 318 FRRKGIHVVRVSAGDE--HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARK--RKTFVLVDT 393 (488)
Q Consensus 318 ~~~~~~~i~~i~~g~~--h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~--~~t~~lt~~ 393 (488)
.......|..++...+ +.+.-..||.|..|-.......................-....|..++... .+.+.-..|
T Consensus 252 ~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D 331 (393)
T 1erj_A 252 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD 331 (393)
T ss_dssp -CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT
T ss_pred CCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCC
Confidence 0111224666655433 334456788888886533221110000000000000001122355555543 334445678
Q ss_pred CcEEEEEc
Q 011336 394 GSVYGFGW 401 (488)
Q Consensus 394 G~vy~wG~ 401 (488)
|.|+.|-.
T Consensus 332 ~~v~iwd~ 339 (393)
T 1erj_A 332 RGVLFWDK 339 (393)
T ss_dssp SEEEEEET
T ss_pred CeEEEEEC
Confidence 88999863
No 115
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=29.58 E-value=3.1e+02 Score=24.56 Aligned_cols=199 Identities=8% Similarity=-0.053 Sum_probs=91.1
Q ss_pred CEEEEEeCCc--eeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEec--CCeeEEEEeCCcEEE
Q 011336 164 HVVQVSASEN--HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHT 239 (488)
Q Consensus 164 ~i~~i~~G~~--~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G--~~h~~~lt~~G~vy~ 239 (488)
.|..++.... ..+.-..||.|+.|-...... ...+.. ....|..++.. ..+.+....+|.|+.
T Consensus 34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~------------~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER------------LGTLDG-HTGTIWSIDVDCFTKYCVTGSADYSIKL 100 (369)
T ss_dssp CEEEEEECTTSCEEEEEESSSCEEEEETTTCCE------------EEEECC-CSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh------------hhhhhh-cCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 5766666543 334445688999996443110 111111 12345655543 345555677899999
Q ss_pred EECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC--CeEEEEEcC-----CcEEEecCCCCCccCCCCCCCCcCc
Q 011336 240 CGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGN-----GVVYSFGSGSNFCLGHGEQHDELQP 312 (488)
Q Consensus 240 wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~--~~~~~lt~~-----G~v~~wG~n~~gqlG~~~~~~~~~p 312 (488)
|-..... ....+. ....|..++... .+.++...+ |.|+.|-.........-........
T Consensus 101 wd~~~~~-----------~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~ 166 (369)
T 3zwl_B 101 WDVSNGQ-----------CVATWK---SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI 166 (369)
T ss_dssp EETTTCC-----------EEEEEE---CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred EECCCCc-----------EEEEee---cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence 9432111 011111 124565555443 344455555 7888886543221110000000001
Q ss_pred eeeeecccCCeeEEEEEeC--CCeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEee--CCeEE
Q 011336 313 RAIQTFRRKGIHVVRVSAG--DEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR--KRKTF 388 (488)
Q Consensus 313 ~~i~~~~~~~~~i~~i~~g--~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G--~~~t~ 388 (488)
..+... .....+..++.. ....++-..+|.|+.|-....+ .+..........|..++.. ....+
T Consensus 167 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~ 234 (369)
T 3zwl_B 167 HKIITH-EGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY-----------EYVDSIDLHEKSISDMQFSPDLTYFI 234 (369)
T ss_dssp EEEECC-TTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT-----------EEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred eeccCC-cCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc-----------EeEEEEecCCCceeEEEECCCCCEEE
Confidence 111110 011134444333 3344555788888888653211 1111111123346666553 23344
Q ss_pred EEEcCCcEEEEEc
Q 011336 389 VLVDTGSVYGFGW 401 (488)
Q Consensus 389 ~lt~~G~vy~wG~ 401 (488)
+-..+|.|+.|-.
T Consensus 235 ~~~~d~~i~v~d~ 247 (369)
T 3zwl_B 235 TSSRDTNSFLVDV 247 (369)
T ss_dssp EEETTSEEEEEET
T ss_pred EecCCceEEEEEC
Confidence 4556888888864
No 116
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=29.09 E-value=1.6e+02 Score=26.68 Aligned_cols=17 Identities=18% Similarity=0.215 Sum_probs=13.1
Q ss_pred ceeEeeeCCcEEEEeCC
Q 011336 121 YHTLLISNSSVFSCGSS 137 (488)
Q Consensus 121 ~h~~~l~~g~vy~wG~n 137 (488)
.|+++..++++|++|-.
T Consensus 91 ~~~~~~~~~~lyv~GG~ 107 (315)
T 4asc_A 91 LFGLGEALNSIYVVGGR 107 (315)
T ss_dssp SCEEEEETTEEEEECCE
T ss_pred ceeEEEECCEEEEEeCC
Confidence 46666688999999963
No 117
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=28.42 E-value=5.2e+02 Score=26.88 Aligned_cols=123 Identities=15% Similarity=0.085 Sum_probs=68.5
Q ss_pred EeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEec--CCeeEEEEeCCcEEEEECCCCC
Q 011336 169 SASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHTCGSNTHG 246 (488)
Q Consensus 169 ~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G--~~h~~~lt~~G~vy~wG~n~~g 246 (488)
+....+.+++|+.|++|..-...--. + ...-......+..-++.+|+.+-+. ..+.++.|++|.+.-.-...+-
T Consensus 511 ~~t~d~ll~ft~~Gr~y~~~~~~lP~---~-~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~ 586 (716)
T 1zvu_A 511 GKSNQPVVFVDSTGRSYAIDPITLPS---A-RGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLV 586 (716)
T ss_dssp CCSSSCEEEEETTSEEEEECTTTSCC---C-C---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGC
T ss_pred ecCCCEEEEEecCCcEEEEEeeeccc---c-cccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhc
Confidence 33456678999999999886544211 1 1011111122233356778887664 3456777888988766432221
Q ss_pred ccCCCCCCCCCCceeecCCCCCCCEEEE---EeCCCeEEEEEcCCcEEEecCCCCCccC
Q 011336 247 QLGHGDTLDRPTPKSIAPLEEVGSVVQI---AAGPSYMLAVTGNGVVYSFGSGSNFCLG 302 (488)
Q Consensus 247 qlG~~~~~~~~~p~~i~~~~~~~~i~~i---~~G~~~~~~lt~~G~v~~wG~n~~gqlG 302 (488)
...........+.+...++.+ ..+..+.++++++|.+..+-.++--.+|
T Consensus 587 -------~~~~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~g 638 (716)
T 1zvu_A 587 -------ARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS 638 (716)
T ss_dssp -------CCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCS
T ss_pred -------ccCccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCccC
Confidence 111122223333333344433 2367899999999999998876544443
No 118
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=27.81 E-value=3.6e+02 Score=24.73 Aligned_cols=234 Identities=11% Similarity=-0.042 Sum_probs=108.0
Q ss_pred CEEEEEeC-CceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecC--CeeEEEEeCCcEEEE
Q 011336 164 HVVQVSAS-ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL--NFTGFLTIRGHVHTC 240 (488)
Q Consensus 164 ~i~~i~~G-~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~--~h~~~lt~~G~vy~w 240 (488)
.|..++-. ....++-..+|.|..|-...... .........-....|..|+... .+.+.-..+|.|..|
T Consensus 96 ~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~---------~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw 166 (357)
T 4g56_B 96 GVTDVAWVSEKGILVASDSGAVELWEILEKES---------LLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW 166 (357)
T ss_dssp CEEEEEEETTTEEEEEETTSCEEEC-----------------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred CEEEEEEcCCCCEEEEECCCEEEEeeccccce---------eEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 46666533 33445556678888884332110 0000000000122456655433 334444678889988
Q ss_pred ECCCCCccCCCCCCCCCCceeecCCC-CCCCEEEEEeC---CCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeee
Q 011336 241 GSNTHGQLGHGDTLDRPTPKSIAPLE-EVGSVVQIAAG---PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQ 316 (488)
Q Consensus 241 G~n~~gqlG~~~~~~~~~p~~i~~~~-~~~~i~~i~~G---~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~ 316 (488)
-... ...+..+. ....|..|+.. ....+.-..+|.|..|-..... +....
T Consensus 167 d~~~--------------~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~------------~~~~~ 220 (357)
T 4g56_B 167 DLSQ--------------KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK------------PATRI 220 (357)
T ss_dssp ETTT--------------TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSS------------CBCBC
T ss_pred ECCC--------------CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCc------------eeeee
Confidence 4321 11111111 12467777663 2345566788999999543211 11111
Q ss_pred ecccCCeeEEEEEeCC--CeEEE-EeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEee---CCeEEEE
Q 011336 317 TFRRKGIHVVRVSAGD--EHVVA-LDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR---KRKTFVL 390 (488)
Q Consensus 317 ~~~~~~~~i~~i~~g~--~h~~~-lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G---~~~t~~l 390 (488)
.+......+..++... .+.++ -..+|.|+.|-... + .....+. .....|..++.. ....+.-
T Consensus 221 ~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~-~----------~~~~~~~-~~~~~v~~l~~sp~~~~~lasg 288 (357)
T 4g56_B 221 DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN-P----------DSAQTSA-VHSQNITGLAYSYHSSPFLASI 288 (357)
T ss_dssp CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC-G----------GGCEEEC-CCSSCEEEEEECSSSSCCEEEE
T ss_pred eeccccccccchhhhhcccceEEEeecccceeEEECCC-C----------cEeEEEe-ccceeEEEEEEcCCCCCEEEEE
Confidence 1111122455555432 23333 36788898886432 1 0111111 123356666653 2333345
Q ss_pred EcCCcEEEEEcCCCCCCCCCCCCCCCceecceEcCccCCCCEEEEEec---CCeEEEEEcCCCEEEEeCCCCC
Q 011336 391 VDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTG---LYHTVVVTDRGRLFGFGDNERA 460 (488)
Q Consensus 391 t~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~v~~G---~~ht~~l~~~G~v~~wG~n~~G 460 (488)
..||.|+.|-... + . ...... ....|..|+.. ....+.-..||+|..|=....|
T Consensus 289 s~D~~i~iwd~~~-~-----------~---~~~~~~-H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 289 SEDCTVAVLDADF-S-----------E---VFRDLS-HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp ETTSCEEEECTTS-C-----------E---EEEECC-CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred eCCCEEEEEECCC-C-----------c---EeEECC-CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 6789999995321 1 0 111111 12357777754 2233334578999999665544
No 119
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=27.40 E-value=2e+02 Score=25.67 Aligned_cols=18 Identities=11% Similarity=0.224 Sum_probs=13.5
Q ss_pred ceeEeeeCCcEEEEeCCC
Q 011336 121 YHTLLISNSSVFSCGSSL 138 (488)
Q Consensus 121 ~h~~~l~~g~vy~wG~n~ 138 (488)
.|+++..++++|++|-..
T Consensus 94 ~~~~~~~~~~iyv~GG~~ 111 (306)
T 3ii7_A 94 SLAACAAEGKIYTSGGSE 111 (306)
T ss_dssp SCEEEEETTEEEEECCBB
T ss_pred ceeEEEECCEEEEECCCC
Confidence 566666889999998643
No 120
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=26.89 E-value=4.2e+02 Score=25.22 Aligned_cols=170 Identities=8% Similarity=0.032 Sum_probs=78.7
Q ss_pred ceEEEecCceeEee-eCCc-EEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeC---------CceeEEEEcC
Q 011336 113 NMQITTGRYHTLLI-SNSS-VFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS---------ENHAAFVLQS 181 (488)
Q Consensus 113 i~~i~~G~~h~~~l-~~g~-vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G---------~~~~~~lt~~ 181 (488)
+..|..|....+++ .||+ +|+.-... .+.-.|.. ......+.......+..|..+ .-+.++++.|
T Consensus 72 ~~~I~vG~~P~va~spDG~~lyVan~~~-~r~~~G~~---~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spD 147 (386)
T 3sjl_D 72 IGMIDGGFLPNPVVADDGSFIAHASTVF-SRIARGER---TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD 147 (386)
T ss_dssp EEEEEECSSCEEEECTTSSCEEEEEEEE-EETTEEEE---EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTT
T ss_pred EEEEECCCCCcEEECCCCCEEEEEcccc-cccccCCC---CCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCC
Confidence 45677776555777 6665 88753210 00000000 113344555555566777765 3567899999
Q ss_pred Cc-EEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecCCeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCce
Q 011336 182 GQ-VFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPK 260 (488)
Q Consensus 182 G~-vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~ 260 (488)
|+ +|.......+.+..-+.... ..-..++. .+. ......|..-.++++.||++........|.+-... .....+.
T Consensus 148 Gk~lyVan~~~~~~VsVID~~t~-~vv~tI~v-~g~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~-~~~~~~~ 223 (386)
T 3sjl_D 148 GKTLLFYQFSPAPAVGVVDLEGK-AFKRMLDV-PDC-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH-TEVFHPE 223 (386)
T ss_dssp SSEEEEEECSSSCEEEEEETTTT-EEEEEEEC-CSE-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE-CCCCSCT
T ss_pred CCEEEEEEcCCCCeEEEEECCCC-cEEEEEEC-CCc-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee-cceeccc
Confidence 87 67764432222221111100 00001110 010 11123455556688899998887665444431100 0000000
Q ss_pred eecCCCCCCCEEEEEeCCCeEEEEEcCCcEEEec
Q 011336 261 SIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFG 294 (488)
Q Consensus 261 ~i~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~wG 294 (488)
....+ ... .......+.++++.+|+||+.-
T Consensus 224 ~~~~~---~~~-~~~~~dG~~~~vs~~g~V~v~d 253 (386)
T 3sjl_D 224 DEFLI---NHP-AYSQKAGRLVWPTYTGKIHQID 253 (386)
T ss_dssp TSCBC---SCC-EEETTTTEEEEEBTTSEEEEEE
T ss_pred ccccc---ccc-eeEcCCCcEEEEeCCCEEEEEE
Confidence 00000 011 1222344667788889999874
No 121
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=25.57 E-value=3.9e+02 Score=24.49 Aligned_cols=243 Identities=10% Similarity=0.003 Sum_probs=110.6
Q ss_pred CCEEEEEeCCc--eeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEec---CCeeEEEEeCCcE
Q 011336 163 AHVVQVSASEN--HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG---LNFTGFLTIRGHV 237 (488)
Q Consensus 163 ~~i~~i~~G~~--~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G---~~h~~~lt~~G~v 237 (488)
..|..++.... ..+.-..||.|..|-..... .+ ......+.. ....|..++.. ....+.-..+|.|
T Consensus 68 ~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~---~~-----~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg~v 138 (416)
T 2pm9_A 68 SKFNDLDWSHNNKIIAGALDNGSLELYSTNEAN---NA-----INSMARFSN-HSSSVKTVKFNAKQDNVLASGGNNGEI 138 (416)
T ss_dssp SCEEEEEECSSSSCEEEEESSSCEEEECCSSTT---SC-----CCEEEECCC-SSSCCCEEEECSSSTTBEEEECSSSCE
T ss_pred CceEEEEECCCCCeEEEEccCCeEEEeeccccc---cc-----ccchhhccC-CccceEEEEEcCCCCCEEEEEcCCCeE
Confidence 35666665433 33334568999999544310 00 000111111 12235555543 3444555678899
Q ss_pred EEEECCCCCccCCCCCCCCCCceeecC-CCCCCCEEEEEeCC---CeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCce
Q 011336 238 HTCGSNTHGQLGHGDTLDRPTPKSIAP-LEEVGSVVQIAAGP---SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPR 313 (488)
Q Consensus 238 y~wG~n~~gqlG~~~~~~~~~p~~i~~-~~~~~~i~~i~~G~---~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~ 313 (488)
+.|-....... .....+..+.. ......|..++... ...+.-..+|.|..|-.... .
T Consensus 139 ~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~--------------~ 199 (416)
T 2pm9_A 139 FIWDMNKCTES-----PSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK--------------K 199 (416)
T ss_dssp EBCBTTTTSSC-----TTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT--------------E
T ss_pred EEEECCCCccc-----cccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC--------------C
Confidence 99854322100 00001111100 11113566666543 33444457888988864331 1
Q ss_pred eeeecccC------CeeEEEEEeCCC---eEEEEeCCC---cEEEEecCCCCCCCCCCCCCcccceeecC-CCCCcEEEE
Q 011336 314 AIQTFRRK------GIHVVRVSAGDE---HVVALDSSG---YVYTWGKGYCGALGHGDEIDKTLPEPLSS-LKSHLAVQV 380 (488)
Q Consensus 314 ~i~~~~~~------~~~i~~i~~g~~---h~~~lt~~G---~vy~wG~n~~gqlG~~~~~~~~~p~~v~~-~~~~~i~~v 380 (488)
.+..+... ...|..++.... ..+.-..+| .|+.|-.....+ |..... .....|..+
T Consensus 200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-----------~~~~~~~~~~~~v~~~ 268 (416)
T 2pm9_A 200 EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-----------PLQTLNQGHQKGILSL 268 (416)
T ss_dssp EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-----------CSBCCCSCCSSCEEEE
T ss_pred cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-----------CcEEeecCccCceeEE
Confidence 11111111 234665555433 333345566 777776533111 111111 122346666
Q ss_pred Ee---eCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceEcCccCCCCEEEEEecC---CeEEEEEcCCCEEEE
Q 011336 381 CA---RKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGL---YHTVVVTDRGRLFGF 454 (488)
Q Consensus 381 ~~---G~~~t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~v~~G~---~ht~~l~~~G~v~~w 454 (488)
+. .....+.-..||.|+.|-...... ...+. .....|..++... ...+.-..||.|..|
T Consensus 269 ~~s~~~~~~l~s~~~dg~v~~wd~~~~~~--------------~~~~~-~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw 333 (416)
T 2pm9_A 269 DWCHQDEHLLLSSGRDNTVLLWNPESAEQ--------------LSQFP-ARGNWCFKTKFAPEAPDLFACASFDNKIEVQ 333 (416)
T ss_dssp EECSSCSSCEEEEESSSEEEEECSSSCCE--------------EEEEE-CSSSCCCCEEECTTCTTEEEECCSSSEEEEE
T ss_pred EeCCCCCCeEEEEeCCCCEEEeeCCCCcc--------------ceeec-CCCCceEEEEECCCCCCEEEEEecCCcEEEE
Confidence 65 345555666789999986322100 01111 1122344454443 333444567888888
Q ss_pred eCCCC
Q 011336 455 GDNER 459 (488)
Q Consensus 455 G~n~~ 459 (488)
-....
T Consensus 334 ~~~~~ 338 (416)
T 2pm9_A 334 TLQNL 338 (416)
T ss_dssp ESCCC
T ss_pred EccCC
Confidence 76554
No 122
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=25.26 E-value=3.6e+02 Score=23.97 Aligned_cols=196 Identities=11% Similarity=-0.015 Sum_probs=97.4
Q ss_pred CCEEEEEeCCc-----eeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEe--------cCCeeE
Q 011336 163 AHVVQVSASEN-----HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--------GLNFTG 229 (488)
Q Consensus 163 ~~i~~i~~G~~-----~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~--------G~~h~~ 229 (488)
..|..++.... ..+.-..+|.|..|-.....+ ....+.. ....|..+.. ...+.+
T Consensus 66 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----------~~~~~~~-~~~~v~~~~~~~~~~~s~~~~~l~ 133 (357)
T 3i2n_A 66 KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM-----------PVYSVKG-HKEIINAIDGIGGLGIGEGAPEIV 133 (357)
T ss_dssp SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS-----------CSEEECC-CSSCEEEEEEESGGGCC-CCCEEE
T ss_pred CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc-----------cEEEEEe-cccceEEEeeccccccCCCccEEE
Confidence 46777776543 344456689999996544210 0111111 1223555532 233455
Q ss_pred EEEeCCcEEEEECCCCCccCCCCCCCCCCceeecCCCC--CCCEEEEE------eCCCeEEEEEcCCcEEEecCCCCCcc
Q 011336 230 FLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEE--VGSVVQIA------AGPSYMLAVTGNGVVYSFGSGSNFCL 301 (488)
Q Consensus 230 ~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~--~~~i~~i~------~G~~~~~~lt~~G~v~~wG~n~~gql 301 (488)
.-..+|.|..|-..... .....+..... ...+..++ ....+.+.-..+|.|+.|-.....
T Consensus 134 ~~~~d~~i~vwd~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-- 201 (357)
T 3i2n_A 134 TGSRDGTVKVWDPRQKD----------DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA-- 201 (357)
T ss_dssp EEETTSCEEEECTTSCS----------SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE--
T ss_pred EEeCCCeEEEEeCCCCC----------CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc--
Confidence 55678999999432211 01111211111 13566665 344556666778999999653311
Q ss_pred CCCCCCCCcCceeeeecccCCeeEEEEEeCC-----CeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCc
Q 011336 302 GHGEQHDELQPRAIQTFRRKGIHVVRVSAGD-----EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHL 376 (488)
Q Consensus 302 G~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~-----~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~ 376 (488)
+..... ....|..++... ...++-..+|.|+.|-......+ ...+..........
T Consensus 202 ----------~~~~~~---~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~~~~~~~ 261 (357)
T 3i2n_A 202 ----------LRWETN---IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT-------KGFASVSEKAHKST 261 (357)
T ss_dssp ----------EEEEEE---CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT-------TEEEEEEEECCSSC
T ss_pred ----------eeeecC---CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc-------cceeeeccCCCcCC
Confidence 111111 122566666543 44455678899988865321100 00110010122335
Q ss_pred EEEEEeeCCe---EEEEEcCCcEEEEEcC
Q 011336 377 AVQVCARKRK---TFVLVDTGSVYGFGWM 402 (488)
Q Consensus 377 i~~v~~G~~~---t~~lt~~G~vy~wG~n 402 (488)
|..++..... .+.-..||.|+.|-..
T Consensus 262 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 262 VWQVRHLPQNRELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence 7777665543 3444578999999854
No 123
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=21.34 E-value=4.3e+02 Score=23.45 Aligned_cols=17 Identities=18% Similarity=0.188 Sum_probs=12.0
Q ss_pred eEEEEEcCCc-EEEEEcC
Q 011336 386 KTFVLVDTGS-VYGFGWM 402 (488)
Q Consensus 386 ~t~~lt~~G~-vy~wG~n 402 (488)
+.++++.+|+ +|+-...
T Consensus 317 ~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 317 NSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEEEECTTSCEEEEEEEC
T ss_pred CeEEEcCCCCEEEEEEcc
Confidence 5677888887 7776543
No 124
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=21.26 E-value=4.5e+02 Score=23.56 Aligned_cols=207 Identities=11% Similarity=-0.057 Sum_probs=96.4
Q ss_pred CEEEEEeC--CceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEec--CCeeEEEEeCCcEEE
Q 011336 164 HVVQVSAS--ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHT 239 (488)
Q Consensus 164 ~i~~i~~G--~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G--~~h~~~lt~~G~vy~ 239 (488)
.|..++.. +...+.-..||.|+.|-... ++ ..+..........|..++.. ....++-..+|.|+.
T Consensus 54 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i 122 (372)
T 1k8k_C 54 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKG-RT----------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 122 (372)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEEET-TE----------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEE
T ss_pred cccEEEEeCCCCEEEEEcCCCeEEEEECCC-Ce----------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEE
Confidence 56666554 34445556788888885432 10 11111111112345555543 334445567788888
Q ss_pred EECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC--CeEEEEEcCCcEEEecCCCCCccCCCCC-----CCCcCc
Q 011336 240 CGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQ-----HDELQP 312 (488)
Q Consensus 240 wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~--~~~~~lt~~G~v~~wG~n~~gqlG~~~~-----~~~~~p 312 (488)
|-...... ......+.. .....|..++... ...+.-..+|.|+.|-..... +..... ......
T Consensus 123 ~d~~~~~~--------~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~~~~~~ 192 (372)
T 1k8k_C 123 CYFEQEND--------WWVCKHIKK-PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE-VEERPAPTPWGSKMPFG 192 (372)
T ss_dssp EEEETTTT--------EEEEEEECT-TCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTT-TSCCCCCBTTBSCCCTT
T ss_pred EEecCCCc--------ceeeeeeec-ccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccc-ccccccccccccccchh
Confidence 74321110 000111111 1124677776643 355556678999999743211 000000 000111
Q ss_pred eeeeecccCCeeEEEEEeCC--CeEEEEeCCCcEEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEee-CCeEEE
Q 011336 313 RAIQTFRRKGIHVVRVSAGD--EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR-KRKTFV 389 (488)
Q Consensus 313 ~~i~~~~~~~~~i~~i~~g~--~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G-~~~t~~ 389 (488)
..+..+......|..++... .+.+....+|.|..|-...... ...+. .....|..++.. +...++
T Consensus 193 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~~~l~ 260 (372)
T 1k8k_C 193 ELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA-----------VATLA-SETLPLLAVTFITESSLVA 260 (372)
T ss_dssp CEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE-----------EEEEE-CSSCCEEEEEEEETTEEEE
T ss_pred hheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCce-----------eEEEc-cCCCCeEEEEEecCCCEEE
Confidence 22222322333566666543 3445557788888886532110 11111 112245555443 445566
Q ss_pred EEcCCcEEEEEcCC
Q 011336 390 LVDTGSVYGFGWMG 403 (488)
Q Consensus 390 lt~~G~vy~wG~n~ 403 (488)
...+|.|+.|-...
T Consensus 261 ~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 261 AGHDCFPVLFTYDS 274 (372)
T ss_dssp EETTSSCEEEEEET
T ss_pred EEeCCeEEEEEccC
Confidence 66788888887543
Done!