BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011338
(488 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GAB|A Chain A, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form I
pdb|3GAB|B Chain B, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form I
pdb|3GAB|C Chain C, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form I
pdb|3GAB|D Chain D, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form I
pdb|3KDG|A Chain A, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form
Ii
pdb|3KDG|B Chain B, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form
Ii
pdb|3KDK|A Chain A, Structure Of The C-Terminal Domain Of Bacillus Subtilis
Mutl Bound To Zn2+
pdb|3KDK|B Chain B, Structure Of The C-Terminal Domain Of Bacillus Subtilis
Mutl Bound To Zn2+
Length = 197
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 270 ALQMQRELQWFKEVESIVQPKYKEMV---NLHYKTPRALFSDQHKKLVE 315
A Q + + ++F+E V+P+ +EM+ HY T AL +QHK+ +E
Sbjct: 35 AAQERIKYEYFREKVGEVEPEVQEMIVPLTFHYSTNEALIIEQHKQELE 83
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
Length = 939
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 270 ALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQHKKLVEQGEKWMK------E 323
++ ++ L + ++S +P++ + N+ L D K+L G +W + +
Sbjct: 658 SITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGSEWCRNKDVVVD 717
Query: 324 TAESCTVVAALIATIMFSAAFTVPGGYDEYT 354
+S A +T AA VP GYDEYT
Sbjct: 718 KKQSVIFEKAGNSTDSALAAVFVPTGYDEYT 748
>pdb|3TX3|A Chain A, Cysz, A Putative Sulfate Permease
pdb|3TX3|B Chain B, Cysz, A Putative Sulfate Permease
Length = 249
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 27/171 (15%)
Query: 299 YKTPRALFSDQHKKLVEQGEKWMKETA-ESCTVVAALIATIMFSAAFTVPGGYDEY---- 353
Y +A +S+ + +G + ++ VV L I+FS AFT G +Y
Sbjct: 2 YVMQKAAYSNSGLAYIGRGLELIRTKGLRRYVVVPILTNLILFSLAFTWLYGEVDYWLNR 61
Query: 354 --TGIPLYLHRNSFMVF--IVSDAMSLFSSCTSVLM------FLGIL---TSRY------ 394
+ +P + F+++ V ++LFS S +M F G+L RY
Sbjct: 62 FMSWLPDFFQWLEFILWPLAVITIIALFSFIFSTIMHLIAAPFNGLLAEKVERYESGESL 121
Query: 395 GEEDFL---KSLPRQLIIGLSSLFFSIATMMVTFGVTLVIILKARIAWVSF 442
G+E FL K +PR L + L + I + F ++LVI + ++ W F
Sbjct: 122 GDEGFLGLFKDIPRTLKREMQKLMYYIPRALGFFLLSLVIPVIGQVLWYIF 172
>pdb|1N57|A Chain A, Crystal Structure Of Chaperone Hsp31
Length = 291
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 306 FSDQHKKLVEQGEKWMKETAESCTVVAALIATIMFSAAFTVPGGYDEYTGIPLYLHRNSF 365
F +QHK L +K VVA+L A ++A F VPGG+ G+P +
Sbjct: 119 FFEQHKSLFRNPKKL-------ADVVASLNADSEYAAIF-VPGGHGALIGLPESQDVAAA 170
Query: 366 MVFIVSDAMSLFSSCTSVLMFLGILTSRYGE 396
+ + + + + S C FL + R+G+
Sbjct: 171 LQWAIKNDRFVISLCHGPAAFLAL---RHGD 198
>pdb|1IZY|A Chain A, Crystal Structure Of Hsp31
pdb|1IZY|B Chain B, Crystal Structure Of Hsp31
Length = 283
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 306 FSDQHKKLVEQGEKWMKETAESCTVVAALIATIMFSAAFTVPGGYDEYTGIPLYLHRNSF 365
F +QHK L +K VVA+L A ++A F VPGG+ G+P +
Sbjct: 119 FFEQHKSLFRNPKKL-------ADVVASLNADSEYAAIF-VPGGHGALIGLPESQDVAAA 170
Query: 366 MVFIVSDAMSLFSSCTSVLMFLGILTSRYGE 396
+ + + + + S C FL + R+G+
Sbjct: 171 LQWAIKNDRFVISLCHGPAAFLAL---RHGD 198
>pdb|1PV2|A Chain A, Native Form 2 E.Coli Chaperone Hsp31
pdb|1PV2|B Chain B, Native Form 2 E.Coli Chaperone Hsp31
pdb|1PV2|C Chain C, Native Form 2 E.Coli Chaperone Hsp31
pdb|1PV2|D Chain D, Native Form 2 E.Coli Chaperone Hsp31
pdb|1PV2|E Chain E, Native Form 2 E.Coli Chaperone Hsp31
pdb|1PV2|F Chain F, Native Form 2 E.Coli Chaperone Hsp31
pdb|1PV2|G Chain G, Native Form 2 E.Coli Chaperone Hsp31
pdb|1PV2|H Chain H, Native Form 2 E.Coli Chaperone Hsp31
Length = 283
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 306 FSDQHKKLVEQGEKWMKETAESCTVVAALIATIMFSAAFTVPGGYDEYTGIPLYLHRNSF 365
F +QHK L +K VVA+L A ++A F VPGG+ G+P +
Sbjct: 119 FFEQHKSLFRNPKKL-------ADVVASLNADSEYAAIF-VPGGHGALIGLPESQDVAAA 170
Query: 366 MVFIVSDAMSLFSSCTSVLMFLGILTSRYGE 396
+ + + + + S C FL + R+G+
Sbjct: 171 LQWAIKNDRFVISLCHGPAAFLAL---RHGD 198
>pdb|1ONS|A Chain A, Crystal Structure Of Escherichia Coli Heat Shock Protein
Yedu
Length = 282
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 306 FSDQHKKLVEQGEKWMKETAESCTVVAALIATIMFSAAFTVPGGYDEYTGIPLYLHRNSF 365
F +QHK L +K VVA+L A ++A F VPGG+ G+P +
Sbjct: 118 FFEQHKSLFRNPKKL-------ADVVASLNADSEYAAIF-VPGGHGALIGLPESQDVAAA 169
Query: 366 MVFIVSDAMSLFSSCTSVLMFLGILTSRYGE 396
+ + + + + S C FL + R+G+
Sbjct: 170 LQWAIKNDRFVISLCHGPAAFLAL---RHGD 197
>pdb|1HU3|A Chain A, Middle Domain Of Human Eif4gii
Length = 260
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 132 LNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGES-QFEKV 174
L AI H VKL +E L C+CR ++T G+ FEK
Sbjct: 159 LKXLTEAIXHDCVVKLLKNHDEESLECLCRLLTTIGKDLDFEKA 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,831,798
Number of Sequences: 62578
Number of extensions: 527408
Number of successful extensions: 1503
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1501
Number of HSP's gapped (non-prelim): 10
length of query: 488
length of database: 14,973,337
effective HSP length: 103
effective length of query: 385
effective length of database: 8,527,803
effective search space: 3283204155
effective search space used: 3283204155
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)