BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011338
(488 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana
GN=At3g12360 PE=2 SV=1
Length = 590
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 123/275 (44%), Gaps = 23/275 (8%)
Query: 159 VCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYAT 218
+ R I +G++ + +AVK E + ++ P I+ D AT
Sbjct: 258 LARRIDKKGQT---------ALHMAVKGQSSEVVKLLLDADPAIVMQPDKSCNTALHVAT 308
Query: 219 LQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVS-----GAALQM 273
+++ +I L+ ++ ++ A + H L A L S + + AL+
Sbjct: 309 RKKRAEIVELLLSL---PDTNANTLTRDHKTALDIAEGLPLSEESSYIKECLARSGALRA 365
Query: 274 QRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQH---KKLVEQGEKWMKETAESCTV 330
Q E+ S V + K V++ + + + H K+L + + + S TV
Sbjct: 366 NELNQPRDELRSTV-TQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTV 424
Query: 331 VAALIATIMFSAAFTVPGGYDEYTGIPLYLHRNSFMVFIVSDAMSLFSSCTSVLMFLGIL 390
VA L AT+ F+A FTVPGG D G + + R SF +F + +A++LF+S V++ + ++
Sbjct: 425 VAVLFATVAFAAIFTVPGG-DNNDGSAVVVGRASFKIFFIFNALALFTSLAVVVVQITLV 483
Query: 391 TSRYGEEDFLKSLPRQLIIGLSSLFFSIATMMVTF 425
E + + +L+ L+S+ S+A + ++
Sbjct: 484 RGETKAEKRVVEVINKLMW-LASMCTSVAFLASSY 517
>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana
GN=At2g01680 PE=1 SV=1
Length = 532
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 126/294 (42%), Gaps = 28/294 (9%)
Query: 174 VGIKK-----VVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNL 228
VG+K + +AVK +E + EI++ I+ D AT + + +I +L
Sbjct: 189 VGVKDKKGQTALHMAVKGRSLEVVEEILQADYTILNERDRKGNTALHIATRKARPQITSL 248
Query: 229 IYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRV-------SGAALQMQRELQWFK 281
+ T A + + N + ++ + + + +++ G + + E + K
Sbjct: 249 LLTFTAIEVNAINNQKETAMDLADKLQYSESALEINEALVEAGAKHGRFIGREDEARALK 308
Query: 282 EVESIVQPKYKEMVNLHYKTPRALFSDQHKKLVEQGEKWMKETAESCTVVAALIATIMFS 341
S ++ + + + + KT R + S K+L + + ++ T S TVVA L A+I F
Sbjct: 309 RAVSDIKHEVQSQLLQNEKTNRRV-SGIAKELRKLHREAVQNTTNSITVVAVLFASIAFL 367
Query: 342 AAFTVPGGY---DEYTGIPLYLHRNSFMVFIVSDAMSLFSSCTSVLMFLGILTSRYGEED 398
A F +PG Y + G R F VF + +A SLF S V++ + ++ +
Sbjct: 368 AIFNLPGQYFTEGSHVGQANIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQK 427
Query: 399 FLKSLPRQLIIGLSSLFFSIATMMVTFGVTLVI---ILKARIAWVSFPIILLAS 449
+ S+ +L+ A TFG L I ++ +W++ I LL +
Sbjct: 428 KVVSVVNKLM---------WAACACTFGAFLAIAFAVVGKGNSWMAITITLLGA 472
>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana
GN=At5g02620 PE=1 SV=1
Length = 524
Score = 40.4 bits (93), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 9/62 (14%)
Query: 327 SCTVVAALIATIMFSAAFTVPGGY-DEYTGIP--------LYLHRNSFMVFIVSDAMSLF 377
S T+VA LIAT+ F+A F VPG Y D+ +P R F++F+V D+ +LF
Sbjct: 352 STTLVAILIATVAFAAIFNVPGQYTDDPKDVPPGYSLGEARAAPRPEFLIFVVFDSFALF 411
Query: 378 SS 379
S
Sbjct: 412 IS 413
>sp|Q0P5W1|VPS8_MOUSE Vacuolar protein sorting-associated protein 8 homolog OS=Mus musculus
GN=Vps8 PE=2 SV=1
Length = 1427
Score = 37.0 bits (84), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 28/145 (19%)
Query: 167 GESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIF 226
G QFE+ + ++ A + I EF+ E Y II CY R+E++F
Sbjct: 885 GIVQFEESRLIRMAEKAEFYQICEFMYEREHQYDKIIDCY---------LHDPLREEEVF 935
Query: 227 NLIYTM----GAKKNSVATNWDKAHNNILHQAAFLAP-----------SSQLDRVSGAAL 271
N I+ + G + W KA N+ + + L P S Q++ V G
Sbjct: 936 NYIHNILSIPGHSAEEKQSVWQKAMNH-MEELVSLKPCKAAELVATHFSEQIEVVIG--- 991
Query: 272 QMQRELQWFKEVESIVQPKYKEMVN 296
Q+Q +L FK + S++ P+ VN
Sbjct: 992 QLQNQLLLFKFLRSLLDPREGVHVN 1016
>sp|Q8N3P4|VPS8_HUMAN Vacuolar protein sorting-associated protein 8 homolog OS=Homo sapiens
GN=VPS8 PE=1 SV=3
Length = 1428
Score = 32.3 bits (72), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 20/141 (14%)
Query: 167 GESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIF 226
G QFE+ + ++ A + I EF+ E Y II CY R+E++F
Sbjct: 887 GIVQFEESRLIRMAEKAEFYQICEFMYEREHQYDKIIDCY---------LRDPLREEEVF 937
Query: 227 NLIYTM----GAKKNSVATNWDKAHNNILH-------QAAFLAPSSQLDRVSGAALQMQR 275
N I+ + G + W KA ++I +AA L + + ++Q
Sbjct: 938 NYIHNILSIPGHSAEEKQSVWQKAMDHIEELVSLKPCKAAELVATHFSGHIETVIKKLQN 997
Query: 276 ELQWFKEVESIVQPKYKEMVN 296
++ FK + S++ P+ VN
Sbjct: 998 QVLLFKFLRSLLDPREGIHVN 1018
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 178,688,089
Number of Sequences: 539616
Number of extensions: 7191285
Number of successful extensions: 20830
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 20819
Number of HSP's gapped (non-prelim): 16
length of query: 488
length of database: 191,569,459
effective HSP length: 121
effective length of query: 367
effective length of database: 126,275,923
effective search space: 46343263741
effective search space used: 46343263741
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)