Query 011338
Match_columns 488
No_of_seqs 496 out of 2880
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 06:04:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011338.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011338hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oy3_D Transcription factor in 100.0 1.3E-32 4.4E-37 265.5 11.1 246 17-311 4-270 (282)
2 2xai_A ASB-9, ankyrin repeat a 100.0 5.5E-31 1.9E-35 252.4 13.8 242 21-308 2-247 (261)
3 1yyh_A HN1;, notch 1, ankyrin 100.0 2E-31 6.9E-36 254.2 9.7 218 17-265 5-241 (253)
4 1k1a_A B-cell lymphoma 3-encod 100.0 1.5E-30 5E-35 245.3 13.5 220 17-309 4-226 (241)
5 3utm_A Tankyrase-1; tankyrase, 100.0 4E-30 1.4E-34 255.7 17.0 249 17-316 53-330 (351)
6 3b7b_A Euchromatic histone-lys 100.0 2.7E-30 9.1E-35 243.2 14.7 216 17-310 6-221 (237)
7 1n11_A Ankyrin; clathrin, BAND 100.0 1.5E-30 5E-35 267.9 13.2 284 1-308 62-386 (437)
8 2dzn_A Probable 26S proteasome 100.0 2.9E-30 9.8E-35 241.4 13.1 215 22-308 2-217 (228)
9 3d9h_A CDNA FLJ77766, highly s 100.0 5E-30 1.7E-34 249.1 13.7 211 17-308 54-264 (285)
10 1n11_A Ankyrin; clathrin, BAND 100.0 5.3E-30 1.8E-34 263.7 13.8 226 2-265 30-263 (437)
11 4g8k_A 2-5A-dependent ribonucl 100.0 6.2E-30 2.1E-34 254.1 12.8 239 1-266 40-320 (337)
12 3aji_A 26S proteasome non-ATPa 100.0 1.2E-29 4.2E-34 237.7 14.0 215 19-311 3-217 (231)
13 2f8y_A Notch homolog 1, transl 100.0 3E-29 1E-33 233.8 15.5 204 1-265 6-209 (223)
14 3ljn_A Hypothetical protein; a 100.0 1.3E-29 4.4E-34 254.6 13.0 217 17-266 15-263 (364)
15 2fo1_E LIN-12 protein; beta-ba 100.0 1.6E-29 5.4E-34 255.2 12.6 222 18-266 120-365 (373)
16 4b93_B Ankyrin repeat domain-c 100.0 7.5E-30 2.6E-34 245.8 8.5 215 17-308 6-227 (269)
17 1wdy_A 2-5A-dependent ribonucl 100.0 5.6E-29 1.9E-33 239.8 13.1 243 21-309 4-263 (285)
18 1wdy_A 2-5A-dependent ribonucl 100.0 8.4E-29 2.9E-33 238.6 14.3 231 1-265 20-271 (285)
19 1ikn_D Protein (I-kappa-B-alph 100.0 8.4E-30 2.9E-34 240.0 6.7 222 17-308 3-228 (236)
20 1s70_B 130 kDa myosin-binding 100.0 3.8E-29 1.3E-33 243.8 9.9 219 18-314 36-280 (299)
21 1s70_B 130 kDa myosin-binding 100.0 1.3E-28 4.3E-33 240.0 13.0 220 1-256 55-274 (299)
22 1k1a_A B-cell lymphoma 3-encod 100.0 8.2E-29 2.8E-33 233.3 10.2 206 2-266 25-235 (241)
23 2rfa_A Transient receptor pote 100.0 3.7E-28 1.3E-32 227.9 14.5 209 21-266 2-216 (232)
24 3aji_A 26S proteasome non-ATPa 100.0 7.2E-29 2.4E-33 232.5 9.3 200 2-263 22-221 (231)
25 1oy3_D Transcription factor in 100.0 1.6E-28 5.6E-33 236.7 11.6 215 1-259 24-270 (282)
26 2dzn_A Probable 26S proteasome 100.0 2E-28 6.8E-33 228.8 11.4 198 2-257 18-218 (228)
27 3b7b_A Euchromatic histone-lys 100.0 5E-28 1.7E-32 227.6 14.0 198 1-260 26-223 (237)
28 3hra_A Ankyrin repeat family p 100.0 3.9E-28 1.3E-32 222.4 12.5 188 20-264 3-195 (201)
29 3d9h_A CDNA FLJ77766, highly s 99.9 2.1E-28 7E-33 237.7 10.7 191 1-256 74-264 (285)
30 4gpm_A Engineered protein OR26 99.9 6.9E-28 2.4E-32 215.4 12.6 150 24-266 6-155 (169)
31 3kea_A K1L; tropism, ANK repea 99.9 9.9E-28 3.4E-32 232.9 12.5 187 17-266 26-214 (285)
32 4b93_B Ankyrin repeat domain-c 99.9 1.2E-27 4E-32 230.4 11.7 183 17-259 47-230 (269)
33 2etb_A Transient receptor pote 99.9 2.1E-27 7.1E-32 226.4 11.4 214 21-266 1-240 (256)
34 4g8k_A 2-5A-dependent ribonucl 99.9 1.4E-27 4.9E-32 237.1 10.4 243 18-309 21-283 (337)
35 2fo1_E LIN-12 protein; beta-ba 99.9 8.2E-28 2.8E-32 242.6 8.5 248 17-309 89-356 (373)
36 3utm_A Tankyrase-1; tankyrase, 99.9 9.3E-27 3.2E-31 231.3 15.5 221 1-256 73-322 (351)
37 2rfm_A Putative ankyrin repeat 99.9 9.6E-27 3.3E-31 212.0 12.9 156 17-265 30-185 (192)
38 2pnn_A Transient receptor pote 99.9 9.9E-27 3.4E-31 224.0 12.1 220 17-266 8-252 (273)
39 3eu9_A Huntingtin-interacting 99.9 1.3E-26 4.6E-31 217.5 12.3 218 18-265 5-228 (240)
40 3v30_A DNA-binding protein rfx 99.9 1.7E-26 5.7E-31 206.4 11.3 152 22-265 2-153 (172)
41 2xai_A ASB-9, ankyrin repeat a 99.9 3.6E-27 1.2E-31 225.8 6.7 226 1-261 18-252 (261)
42 1sw6_A Regulatory protein SWI6 99.9 1.9E-26 6.6E-31 228.3 12.1 210 2-258 113-327 (327)
43 2vge_A RELA-associated inhibit 99.9 2.8E-27 9.4E-32 222.3 4.0 176 2-265 1-206 (229)
44 4hbd_A KN motif and ankyrin re 99.9 5.7E-26 2E-30 219.5 13.0 161 18-265 107-268 (276)
45 3v31_A Ankyrin repeat family A 99.9 6E-26 2.1E-30 201.8 11.9 153 21-266 2-154 (167)
46 3jxi_A Vanilloid receptor-rela 99.9 6.4E-26 2.2E-30 216.5 11.2 217 19-266 2-244 (260)
47 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.3E-25 4.6E-30 200.2 12.5 155 17-264 9-163 (169)
48 3twr_A Tankyrase-2; ankyrin re 99.9 3.7E-26 1.3E-30 202.7 8.7 154 18-264 4-157 (165)
49 1awc_B Protein (GA binding pro 99.9 1E-25 3.4E-30 197.5 11.3 150 21-264 1-150 (153)
50 2f8y_A Notch homolog 1, transl 99.9 2.7E-26 9.3E-31 213.7 8.0 201 32-309 1-201 (223)
51 1bd8_A P19INK4D CDK4/6 inhibit 99.9 1.4E-25 4.8E-30 197.0 11.9 150 21-264 1-150 (156)
52 3ljn_A Hypothetical protein; a 99.9 8.2E-27 2.8E-31 234.1 4.2 245 1-263 35-305 (364)
53 4gpm_A Engineered protein OR26 99.9 1.5E-25 5.3E-30 200.1 11.5 143 1-235 19-161 (169)
54 1ihb_A P18-INK4C(INK6), cyclin 99.9 2E-25 6.9E-30 197.1 10.3 152 21-265 4-155 (162)
55 3f6q_A Integrin-linked protein 99.9 1.8E-25 6.1E-30 201.2 8.2 152 20-263 3-154 (179)
56 1sw6_A Regulatory protein SWI6 99.9 6E-26 2E-30 224.8 5.4 215 1-308 34-325 (327)
57 1yyh_A HN1;, notch 1, ankyrin 99.9 8.4E-25 2.9E-29 208.2 12.2 203 1-233 38-246 (253)
58 2rfa_A Transient receptor pote 99.9 3E-24 1E-28 201.2 13.9 190 2-235 19-222 (232)
59 1ikn_D Protein (I-kappa-B-alph 99.9 6E-25 2E-29 206.7 8.0 205 1-257 23-229 (236)
60 3kea_A K1L; tropism, ANK repea 99.9 6.3E-25 2.1E-29 213.1 7.6 192 1-265 46-239 (285)
61 3hra_A Ankyrin repeat family p 99.9 1.5E-23 5E-28 191.8 12.6 175 2-233 21-201 (201)
62 3eu9_A Huntingtin-interacting 99.9 1.3E-23 4.5E-28 197.0 11.2 205 1-235 24-235 (240)
63 2pnn_A Transient receptor pote 99.9 1.2E-23 4.1E-28 202.4 9.5 193 18-250 50-270 (273)
64 3v30_A DNA-binding protein rfx 99.9 2.4E-23 8.3E-28 185.8 10.0 154 2-250 18-171 (172)
65 1ihb_A P18-INK4C(INK6), cyclin 99.9 2.3E-23 7.8E-28 183.9 9.4 143 1-235 20-162 (162)
66 2etb_A Transient receptor pote 99.9 2E-23 7E-28 198.7 9.4 195 3-235 23-246 (256)
67 4hbd_A KN motif and ankyrin re 99.9 1.8E-23 6.1E-28 201.9 8.4 178 22-309 76-260 (276)
68 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.6E-23 5.3E-28 197.8 7.8 154 19-266 2-158 (239)
69 1bi7_B P16INK4A, MTS1, multipl 99.9 3.7E-23 1.3E-27 181.9 9.2 144 17-254 7-151 (156)
70 3jxi_A Vanilloid receptor-rela 99.9 3.4E-23 1.2E-27 197.5 8.3 181 18-235 42-250 (260)
71 1d9s_A Cyclin-dependent kinase 99.9 2E-22 7E-27 172.8 9.9 128 17-234 7-135 (136)
72 3t8k_A Uncharacterized protein 99.9 2.8E-23 9.4E-28 188.5 4.6 152 22-264 6-171 (186)
73 2y1l_E Darpin-8.4; hydrolase-i 99.9 3.3E-22 1.1E-26 178.1 11.5 141 1-233 29-169 (169)
74 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.3E-22 4.6E-27 191.4 5.7 165 2-259 21-193 (239)
75 2rfm_A Putative ankyrin repeat 99.9 9.1E-22 3.1E-26 178.9 9.6 141 1-233 50-190 (192)
76 1awc_B Protein (GA binding pro 99.9 1.1E-21 3.8E-26 171.6 9.7 135 2-229 18-152 (153)
77 2aja_A Ankyrin repeat family p 99.9 1.1E-22 3.6E-27 204.5 2.8 158 18-233 88-248 (376)
78 3v31_A Ankyrin repeat family A 99.8 1.7E-21 5.7E-26 172.9 10.1 141 2-234 19-159 (167)
79 2jab_A H10-2-G3; HER2, darpin, 99.8 3.2E-21 1.1E-25 165.3 10.9 127 18-233 10-136 (136)
80 3f6q_A Integrin-linked protein 99.8 1.1E-21 3.8E-26 176.3 8.4 151 2-247 21-171 (179)
81 1bd8_A P19INK4D CDK4/6 inhibit 99.8 2.3E-21 7.8E-26 169.9 9.2 138 2-232 18-155 (156)
82 3twr_A Tankyrase-2; ankyrin re 99.8 2E-21 6.9E-26 172.0 8.8 141 2-234 24-164 (165)
83 1n0r_A 4ANK, 4 ankyrin repeats 99.8 7.3E-21 2.5E-25 159.8 11.4 126 21-235 1-126 (126)
84 1d9s_A Cyclin-dependent kinase 99.8 1.7E-21 5.8E-26 167.0 6.9 102 154-264 26-128 (136)
85 2b0o_E UPLC1; arfgap, structur 99.8 8.5E-21 2.9E-25 185.4 9.7 145 20-260 149-299 (301)
86 1bi7_B P16INK4A, MTS1, multipl 99.8 6E-21 2.1E-25 167.6 5.2 122 155-304 27-149 (156)
87 3deo_A Signal recognition part 99.8 5.7E-21 1.9E-25 172.5 4.8 47 19-67 41-87 (183)
88 3c5r_A BARD-1, BRCA1-associate 99.8 6.7E-21 2.3E-25 163.4 4.8 50 17-67 5-54 (137)
89 3ui2_A Signal recognition part 99.8 5.9E-21 2E-25 180.8 4.7 137 19-266 42-179 (244)
90 3c5r_A BARD-1, BRCA1-associate 99.8 1.3E-20 4.5E-25 161.5 5.7 102 155-264 25-126 (137)
91 3deo_A Signal recognition part 99.8 9.1E-21 3.1E-25 171.2 4.0 88 172-263 72-159 (183)
92 2jab_A H10-2-G3; HER2, darpin, 99.8 3.8E-20 1.3E-24 158.6 7.7 88 172-264 43-130 (136)
93 3aaa_C Myotrophin, protein V-1 99.8 7.7E-20 2.6E-24 153.7 7.0 81 172-257 36-116 (123)
94 3ui2_A Signal recognition part 99.8 2E-20 6.8E-25 177.1 3.5 84 172-259 73-156 (244)
95 3t8k_A Uncharacterized protein 99.8 2.3E-20 7.8E-25 169.2 3.1 131 20-233 36-177 (186)
96 1n0r_A 4ANK, 4 ankyrin repeats 99.8 2E-19 6.8E-24 150.9 8.7 88 172-264 31-118 (126)
97 3ehr_A Osteoclast-stimulating 99.8 5.9E-20 2E-24 170.9 6.0 63 172-235 136-198 (222)
98 3aaa_C Myotrophin, protein V-1 99.8 1.3E-19 4.4E-24 152.3 7.2 115 18-221 3-117 (123)
99 2vge_A RELA-associated inhibit 99.8 4.7E-20 1.6E-24 172.8 4.5 104 155-266 36-142 (229)
100 3ehr_A Osteoclast-stimulating 99.8 2E-19 6.8E-24 167.4 4.4 105 155-266 88-192 (222)
101 2aja_A Ankyrin repeat family p 99.8 6.8E-20 2.3E-24 184.1 0.5 113 1-135 107-222 (376)
102 3jue_A Arfgap with coiled-coil 99.7 3E-18 1E-22 171.5 10.5 151 18-258 195-348 (368)
103 1n0q_A 3ANK, 3 ankyrin repeats 99.7 2.6E-18 9E-23 136.8 6.6 85 175-264 1-85 (93)
104 3lvq_E ARF-GAP with SH3 domain 99.7 1.1E-17 3.9E-22 174.8 12.2 140 21-256 131-276 (497)
105 1dcq_A PYK2-associated protein 99.7 1.2E-17 3.9E-22 161.2 11.2 129 21-234 129-262 (278)
106 3jue_A Arfgap with coiled-coil 99.7 2E-17 6.9E-22 165.5 9.5 114 174-308 233-346 (368)
107 1dcq_A PYK2-associated protein 99.7 4.8E-17 1.6E-21 156.9 11.4 88 172-264 165-255 (278)
108 1n0q_A 3ANK, 3 ankyrin repeats 99.7 4E-17 1.4E-21 129.9 8.5 46 21-67 1-46 (93)
109 2b0o_E UPLC1; arfgap, structur 99.7 5.1E-17 1.7E-21 158.5 10.0 107 172-308 186-295 (301)
110 2l6b_A NR1C; ankyrin, consensu 99.7 5.2E-17 1.8E-21 134.4 6.3 89 155-251 24-112 (115)
111 2l6b_A NR1C; ankyrin, consensu 99.7 2.7E-17 9.1E-22 136.2 4.4 108 172-303 5-112 (115)
112 2zgd_A 3 repeat synthetic anky 99.6 1.4E-16 4.9E-21 131.0 6.5 87 172-263 20-106 (110)
113 3lvq_E ARF-GAP with SH3 domain 99.6 1.9E-15 6.6E-20 157.8 9.4 89 173-266 168-259 (497)
114 2zgd_A 3 repeat synthetic anky 99.5 1.5E-14 5.2E-19 118.7 8.6 51 16-67 18-68 (110)
115 2k1a_A Integrin alpha-IIB; sin 29.0 1E+02 0.0034 19.5 4.4 11 470-480 31-41 (42)
116 2l8s_A Integrin alpha-1; trans 26.1 50 0.0017 22.2 2.7 10 473-482 33-42 (54)
No 1
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.97 E-value=1.3e-32 Score=265.53 Aligned_cols=246 Identities=13% Similarity=-0.026 Sum_probs=170.4
Q ss_pred CCCCCchhHHHHHHHcCCccHHHHHHHhCcc--ccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccc
Q 011338 17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRK--LAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYA 94 (488)
Q Consensus 17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~--~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~ 94 (488)
.+|.+|+||||+||..|+.+++++|++.++. .++.+|..|+||||+||..| +.++++.|+.....+
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g-------~~~~v~~Ll~~ga~~----- 71 (282)
T 1oy3_D 4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG-------EASTVEKLYAAGAGV----- 71 (282)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHT-------CHHHHHHHHHTTCCS-----
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcC-------CHHHHHHHHHcCCCC-----
Confidence 4789999999999999999999999988543 47889999999999999999 467788777654322
Q ss_pred cCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHH--------HH------HhhH-----hHHHH
Q 011338 95 SNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYE--------VK------LAHV-----QTQEL 155 (488)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~--------~~------~~h~-----~~~~i 155 (488)
...+..|.||||.|+..++.++++.+++.+......... .. ..+. .....
T Consensus 72 -----------~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (282)
T 1oy3_D 72 -----------LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEE 140 (282)
T ss_dssp -----------SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC--------------------------------
T ss_pred -----------CCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhh
Confidence 123557899999999999999999999876431100000 00 0000 00011
Q ss_pred HHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCc
Q 011338 156 LSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAK 235 (488)
Q Consensus 156 l~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~ 235 (488)
...+.......+ .++..|.||||+|+..|+.+++++|++.+++.....+..|+||||+|+.+|+.+++++|++.|++
T Consensus 141 ~~~~~~~~~~~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad 217 (282)
T 1oy3_D 141 EPRDEDWRLQLE---AENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217 (282)
T ss_dssp ---CCCGGGGTT---CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred hhhhhhhhhcCC---CcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 111111111122 25778999999999999999999999999887655335699999999999999999999999887
Q ss_pred cccccccccCCCCcHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhHHHH
Q 011338 236 KNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQHK 311 (488)
Q Consensus 236 ~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~~~~ 311 (488)
++.+|.+|+||||+|+..|+.++++.|. + .....+.+|++|.||++.+.....
T Consensus 218 ----~~~~d~~g~tpL~~A~~~~~~~~v~~Ll----------------~---~ga~~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 218 ----PTARMYGGRTPLGSALLRPNPILARLLR----------------A---HGAPEPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp ----TTCCCTTSCCHHHHHHTSSCHHHHHHHH----------------H---TTCCCCCCC---------------
T ss_pred ----CcccccCCCCHHHHHHHcCCcHHHHHHH----------------H---cCCCcCcCCCcccccccccCCccc
Confidence 7999999999999999999876653321 0 223456889999999999866543
No 2
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.97 E-value=5.5e-31 Score=252.38 Aligned_cols=242 Identities=8% Similarity=-0.027 Sum_probs=177.5
Q ss_pred CchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCC
Q 011338 21 NGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISH 100 (488)
Q Consensus 21 ~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~ 100 (488)
+|+||||+|+..|+.+++++|++.+ ..++.+|.+|.||||+|+..| ..++++.++....++
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g-------~~~~v~~Ll~~g~~~----------- 62 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQG-WAVNIITADHVSPLHEACLGG-------HLSCVKILLKHGAQV----------- 62 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCTTCCCHHHHHHHHT-------CHHHHHHHHHTTCCT-----------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcC-------CHHHHHHHHHCCCCC-----------
Confidence 5789999999999999999999884 457888889999999999888 456677666543222
Q ss_pred CCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhh----HhHHHHHHHHhhhhcccCchhhhhcCc
Q 011338 101 GDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAH----VQTQELLSCVCREISTQGESQFEKVGI 176 (488)
Q Consensus 101 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h----~~~~~il~~l~~~~~~~~~~~~~~~~g 176 (488)
...+..|.||+|.|+..++.++++.+++.+.............| .+..++++.|++.+.+.+. +|..|
T Consensus 63 -----~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~---~~~~g 134 (261)
T 2xai_A 63 -----NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDH---KISHL 134 (261)
T ss_dssp -----TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC---CBTTT
T ss_pred -----CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCc---CCCCC
Confidence 12345678899999999999999999887643211111111112 2345778888887766554 67889
Q ss_pred chHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHH
Q 011338 177 KKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAF 256 (488)
Q Consensus 177 ~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~ 256 (488)
.||||+|+..|+.+++++|++.+++.. .|..|+||||+|+.+|+.+++++|++.|++ ++.+|.+|+||||+|+.
T Consensus 135 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad----~~~~d~~g~tpl~~A~~ 208 (261)
T 2xai_A 135 GTPLYLACENQQRACVKKLLESGADVN--QGKGQDSPLHAVARTASEELACLLMDFGAD----TQAKNAEGKRPVELVPP 208 (261)
T ss_dssp BCHHHHHHHTTCHHHHHHHHHHTCCTT--CCBTTBCHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTSCCGGGGSCT
T ss_pred CCHHHHHHHhCCHHHHHHHHHcCCCCC--CCCCCCChHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCCChhhhccc
Confidence 999999999999999999999998865 388999999999999999999999999987 79999999999999996
Q ss_pred hCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhH
Q 011338 257 LAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSD 308 (488)
Q Consensus 257 ~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~ 308 (488)
.++ +++.+... .....+.......++|..|+||++.+.+
T Consensus 209 ~~~--~~~~ll~~-----------~~~~~l~~~~~~~~r~~~g~t~l~~~~~ 247 (261)
T 2xai_A 209 ESP--LAQLFLER-----------EGPPSLMQLCRLRIRKCFGIQQHHKITK 247 (261)
T ss_dssp TCT--HHHHHHHC------------CCCCHHHHHHHHHHTTSCTTCGGGGGG
T ss_pred ccc--HHHHHHhc-----------cCCccHHHHHHHHHHHHhchhccccCcc
Confidence 543 32211000 0000000113456889999999998764
No 3
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.97 E-value=2e-31 Score=254.15 Aligned_cols=218 Identities=10% Similarity=-0.028 Sum_probs=146.7
Q ss_pred CCCCCchhHHHHHHHcC-------------CccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHh
Q 011338 17 DKGTNGAMLLTSCIIDD-------------IFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWI 83 (488)
Q Consensus 17 ~~d~~G~T~LH~A~~~g-------------~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li 83 (488)
.+|.+|+||||+|+..| +.+++++|++.+++..+..|.+|+||||+||..| ..+.++.++
T Consensus 5 ~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g-------~~~~v~~Ll 77 (253)
T 1yyh_A 5 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS-------RSDAAKRLL 77 (253)
T ss_dssp -----------------------------------------------CCCTTSCCHHHHHHHTT-------CHHHHHHHH
T ss_pred CCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcC-------CHHHHHHHH
Confidence 37889999999999987 8999999999988776777999999999999999 466777777
Q ss_pred hhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHH--hh----HhHHHHHH
Q 011338 84 YSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKL--AH----VQTQELLS 157 (488)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~--~h----~~~~~il~ 157 (488)
....++ ...+..|.||||.|+..++.++++.+++.+...+...+..+. .| .+..++++
T Consensus 78 ~~g~~~----------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 141 (253)
T 1yyh_A 78 EASADA----------------NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLE 141 (253)
T ss_dssp HTTCCT----------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHH
T ss_pred HcCCCC----------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHH
Confidence 543322 123557889999999999999999999877533322211111 12 23346777
Q ss_pred HHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccc
Q 011338 158 CVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKN 237 (488)
Q Consensus 158 ~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~ 237 (488)
.|++.+.+.+. +|..|.||||+|+..|+.+++++|++.+++. +.+|..|+||||+|+.+|+.+++++|++.|++
T Consensus 142 ~Ll~~g~~~~~---~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-- 215 (253)
T 1yyh_A 142 DLINSHADVNA---VDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDHFAN-- 215 (253)
T ss_dssp HHHHTTCCTTC---BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC--
T ss_pred HHHHcCCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC--
Confidence 88887766554 6788999999999999999999999998875 45699999999999999999999999999987
Q ss_pred cccccccCCCCcHHHHHHHhCCCCCccc
Q 011338 238 SVATNWDKAHNNILHQAAFLAPSSQLDR 265 (488)
Q Consensus 238 ~~~~~~D~~G~TpLhlA~~~~~~~~v~~ 265 (488)
++.+|..|+||||+|++.|+.++++.
T Consensus 216 --~~~~d~~g~tpl~~A~~~g~~~i~~~ 241 (253)
T 1yyh_A 216 --RDITDHMDRLPRDIAQERMHHDIVRL 241 (253)
T ss_dssp --TTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred --ccccccCCCCHHHHHHHcCCHHHHHH
Confidence 78999999999999999999877643
No 4
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.97 E-value=1.5e-30 Score=245.32 Aligned_cols=220 Identities=11% Similarity=0.019 Sum_probs=174.0
Q ss_pred CCCCCchhHHHHHHHcCCccHHHHHHH---hCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhcc
Q 011338 17 DKGTNGAMLLTSCIIDDIFDIPLDLLQ---RYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAY 93 (488)
Q Consensus 17 ~~d~~G~T~LH~A~~~g~~div~~LL~---~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~ 93 (488)
.+|.+|+||||+||..|+.+++++|++ ..+..++.+|.+|.||||+|+..| ..++++.++.....+
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~-------~~~~v~~Ll~~g~~~---- 72 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITT-------LPSVVRLLVTAGASP---- 72 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTT-------CHHHHHHHHHTTCCT----
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcC-------CHHHHHHHHHcCCCc----
Confidence 478999999999999999999999998 356678899999999999999999 466777777543322
Q ss_pred ccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhh
Q 011338 94 ASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEK 173 (488)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~ 173 (488)
...+..|.||+|.|+..++.++++.+++.+.... ...+ .++
T Consensus 73 ------------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~------------------------~~~~---~~~ 113 (241)
T 1k1a_A 73 ------------MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGT------------------------LDLE---ARN 113 (241)
T ss_dssp ------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTS------------------------CCTT---CCC
T ss_pred ------------cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc------------------------cccc---ccC
Confidence 1235578899999999888888887776553110 0111 256
Q ss_pred cCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHH
Q 011338 174 VGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQ 253 (488)
Q Consensus 174 ~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhl 253 (488)
..|.||||+|+..|+.+++++|++.+++.....+..|+||||+|+.+|+.+++++|++.|++ ++.+|.+|+||||+
T Consensus 114 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~ 189 (241)
T 1k1a_A 114 YDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN----VNAQMYSGSSALHS 189 (241)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCBCTTSCBHHHH
T ss_pred cCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCCCHHHH
Confidence 77999999999999999999999999886544237899999999999999999999999876 79999999999999
Q ss_pred HHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhHH
Q 011338 254 AAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQ 309 (488)
Q Consensus 254 A~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~~ 309 (488)
|+..|+.++++.+. + ...+.+.+|++|+||++++.+.
T Consensus 190 A~~~~~~~~v~~Ll----------------~---~ga~~~~~~~~g~tpl~~A~~~ 226 (241)
T 1k1a_A 190 ASGRGLLPLVRTLV----------------R---SGADSSLKNCHNDTPLMVARSR 226 (241)
T ss_dssp HHHHTCHHHHHHHH----------------H---TTCCTTCCCTTSCCTTTTCSSH
T ss_pred HHHcCCHHHHHHHH----------------h---cCCCCCCcCCCCCCHHHHHHhc
Confidence 99999866553221 1 2234567899999999998654
No 5
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.97 E-value=4e-30 Score=255.67 Aligned_cols=249 Identities=10% Similarity=-0.016 Sum_probs=187.6
Q ss_pred CCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccC
Q 011338 17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASN 96 (488)
Q Consensus 17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~ 96 (488)
.+|.+|.||||+|+..|+.+++++|++.+ ..++.+|.+|+||||+|+..| +.++++.++.....+
T Consensus 53 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g-------~~~iv~~Ll~~g~~~------- 117 (351)
T 3utm_A 53 ASDGRKSTPLHLAAGYNRVRIVQLLLQHG-ADVHAKDKGGLVPLHNACSYG-------HYEVTELLLKHGACV------- 117 (351)
T ss_dssp CSSTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTT-------CHHHHHHHHHTTCCT-------
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCcHHHHHHHCC-------CHHHHHHHHHCCCCC-------
Confidence 37889999999999999999999999985 457899999999999999999 467788777654322
Q ss_pred CCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhh-hhHHH-------------------HH--Hh----hH
Q 011338 97 NISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAI-KHIYE-------------------VK--LA----HV 150 (488)
Q Consensus 97 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~-~~~~~-------------------~~--~~----h~ 150 (488)
...+..|.||+|.|+..++.++++.+++.+.... ..... .. .. ..
T Consensus 118 ---------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 188 (351)
T 3utm_A 118 ---------NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAARE 188 (351)
T ss_dssp ---------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHh
Confidence 1234578899999999999999999998764210 00000 00 00 01
Q ss_pred hHHHHHHHHhhhhcccCchhhhhcCcchHHHHHHHc---CcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHH
Q 011338 151 QTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKH---GIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFN 227 (488)
Q Consensus 151 ~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~---G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~ 227 (488)
...+.+..++..... ....+..|.||||+|+.. +..+++++|++.+.+. +.+|.+|+||||+|+.+|+.++++
T Consensus 189 ~~~~~~~~~l~~~~~---~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~ 264 (351)
T 3utm_A 189 ADLAKVKKTLALEII---NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVME 264 (351)
T ss_dssp TCHHHHHHHTTTCCT---TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHhhcc---cccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHHcCCHHHHH
Confidence 112233333332111 111466799999999999 6689999999998875 456999999999999999999999
Q ss_pred HHHhcCCccccccccccCCCCcHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhh
Q 011338 228 LIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFS 307 (488)
Q Consensus 228 ~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~ 307 (488)
+|++.|++ +|.+|..|+||||+|+..|+.++++.|. + ...+.+.+|++|+||++++.
T Consensus 265 ~Ll~~ga~----~n~~d~~g~t~L~~A~~~~~~~~v~~Ll----------------~---~gad~~~~~~~g~tal~~a~ 321 (351)
T 3utm_A 265 VLHKHGAK----MNALDSLGQTALHRAALAGHLQTCRLLL----------------S---YGSDPSIISLQGFTAAQMGN 321 (351)
T ss_dssp HHHHTTCC----TTCCCTTSCCHHHHHHHHTCHHHHHHHH----------------H---TTCCTTCCCTTSCCHHHHSC
T ss_pred HHHHCCCC----CCCcCCCCCCHHHHHHHcCcHHHHHHHH----------------H---cCCCCCCcCCCCCChhhhhh
Confidence 99999876 7999999999999999999876653321 0 22346788999999999987
Q ss_pred HHHHHHHHh
Q 011338 308 DQHKKLVEQ 316 (488)
Q Consensus 308 ~~~~~l~~~ 316 (488)
+...++..+
T Consensus 322 ~~~~~~l~~ 330 (351)
T 3utm_A 322 EAVQQILSE 330 (351)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 766665544
No 6
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.97 E-value=2.7e-30 Score=243.20 Aligned_cols=216 Identities=14% Similarity=0.001 Sum_probs=173.4
Q ss_pred CCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccC
Q 011338 17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASN 96 (488)
Q Consensus 17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~ 96 (488)
.+|.+|.||||+|+..|+.+++++|++.+. .++..|.+|.||||+|+..| ..+.++.++.....+
T Consensus 6 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~-------~~~~v~~Ll~~g~~~------- 70 (237)
T 3b7b_A 6 MEHQNKRSPLHAAAEAGHVDICHMLVQAGA-NIDTCSEDQRTPLMEAAENN-------HLEAVKYLIKAGALV------- 70 (237)
T ss_dssp CSSCCSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHHTT-------CHHHHHHHHTTTCCC-------
T ss_pred cccCCCCCHHHHHHHcCcHHHHHHHHHcCC-CcCccCCCCCCHHHHHHHhC-------CHHHHHHHHhCCCCC-------
Confidence 478899999999999999999999999854 57889999999999999999 466777776433211
Q ss_pred CCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCc
Q 011338 97 NISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGI 176 (488)
Q Consensus 97 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g 176 (488)
...+..+.||+|.|+..++.++++.+++.+... .+ .++..|
T Consensus 71 ---------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~---------------------------~~---~~~~~g 111 (237)
T 3b7b_A 71 ---------DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD---------------------------VN---CQDDGG 111 (237)
T ss_dssp ---------CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC---------------------------TT---CCCTTS
T ss_pred ---------CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC---------------------------cc---cCCCCC
Confidence 123457889999999988888887777655211 11 146679
Q ss_pred chHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHH
Q 011338 177 KKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAF 256 (488)
Q Consensus 177 ~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~ 256 (488)
.||||+|+..|+.+++++|++.+++. ..+|..|+||||+|+..|+.+++++|++.|.+ ++.+|.+|+||||+|+.
T Consensus 112 ~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~g~t~L~~A~~ 186 (237)
T 3b7b_A 112 WTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLAAKCD----LHAVNIHGDSPLHIAAR 186 (237)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCC----TTCCCTTCCCHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHH
Confidence 99999999999999999999998875 45689999999999999999999999999876 78999999999999999
Q ss_pred hCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhHHH
Q 011338 257 LAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQH 310 (488)
Q Consensus 257 ~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~~~ 310 (488)
.|+.++++.+. + ...+.+.+|++|+||++++....
T Consensus 187 ~~~~~~v~~Ll----------------~---~gad~~~~d~~g~t~l~~A~~~~ 221 (237)
T 3b7b_A 187 ENRYDCVVLFL----------------S---RDSDVTLKNKEGETPLQCASLNS 221 (237)
T ss_dssp TTCHHHHHHHH----------------T---TTCCTTCCCTTSCCHHHHSCTTC
T ss_pred hCCHhHHHHHH----------------H---cCCCCCccCCCCCCHHHHHHHHH
Confidence 99866543221 0 22445678999999999986543
No 7
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.97 E-value=1.5e-30 Score=267.88 Aligned_cols=284 Identities=11% Similarity=0.035 Sum_probs=175.5
Q ss_pred CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338 1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK 80 (488)
Q Consensus 1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~ 80 (488)
+|++|++.+.+.+. +|.+|+||||+|+..|+.+++++|++.+. .++..|..|.||||+|+..|+ .+.++
T Consensus 62 ~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~~~g~t~L~~A~~~g~-------~~~v~ 130 (437)
T 1n11_A 62 VAKYLLQNKAKVNA---KAKDDQTPLHCAARIGHTNMVKLLLENNA-NPNLATTAGHTPLHIAAREGH-------VETVL 130 (437)
T ss_dssp HHHHHHHHTCCSSC---CCTTSCCHHHHHHHHTCHHHHHHHHHHTC-CTTCCCTTCCCHHHHHHHHTC-------HHHHH
T ss_pred HHHHHHhCCCCCCC---CCCCCCCHHHHHHHCCCHHHHHHHHhCCC-CCCCCCCCCCcHHHHHHHcCC-------HHHHH
Confidence 46788888776554 68889999999999999999999998854 467888889999999998883 44555
Q ss_pred HHhhhhhhhh----------------------hccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchh
Q 011338 81 KWIYSFIYIR----------------------SAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPA 138 (488)
Q Consensus 81 ~li~~~~~v~----------------------~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~ 138 (488)
.++....... +..++.. ......+..|.||+|.|+..++.++++.+++.+...
T Consensus 131 ~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 205 (437)
T 1n11_A 131 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD-----AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP 205 (437)
T ss_dssp HHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCS
T ss_pred HHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCC-----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Confidence 5544322110 0000100 011123446677777777777777777777765321
Q ss_pred -hhhHHHHHHhh----HhHHHHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccH
Q 011338 139 -IKHIYEVKLAH----VQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHI 213 (488)
Q Consensus 139 -~~~~~~~~~~h----~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~ 213 (488)
..........| .+..++++.|++.+...+. ++..|.||||+|+..|+.+++++|++.+++. +..|..|+||
T Consensus 206 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~ 281 (437)
T 1n11_A 206 HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANA---ESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTP 281 (437)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC---CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCH
T ss_pred CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCCCCH
Confidence 00000000111 2234666666666554433 4566778888888888888888887776664 3447777778
Q ss_pred HHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCCCcccccc-------------hHHhhHHHHhHH
Q 011338 214 FSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSG-------------AALQMQRELQWF 280 (488)
Q Consensus 214 Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l~~-------------~~l~~~~~l~~~ 280 (488)
||+|+..|+.+++++|++.|.+ ++.+|..|+||||+|+..|+.++++.|.. .++.....-...
T Consensus 282 L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~ 357 (437)
T 1n11_A 282 LHLVAQEGHVPVADVLIKHGVM----VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT 357 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCC----TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHhCCcc----CCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChH
Confidence 8888777777777777777665 67777778888888887777776654411 112211111112
Q ss_pred HHHHhhcc-chhHHHhhcCCCCchhhhhH
Q 011338 281 KEVESIVQ-PKYKEMVNLHYKTPRALFSD 308 (488)
Q Consensus 281 ~~v~~~~~-~~~~~~~n~~G~tp~~l~~~ 308 (488)
+.++.++. ..+.+.+|++|+||++++.+
T Consensus 358 ~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~ 386 (437)
T 1n11_A 358 DIVTLLLKNGASPNEVSSDGTTPLAIAKR 386 (437)
T ss_dssp HHHHHHHHTTCCSCCCCSSSCCHHHHHHH
T ss_pred HHHHHHHHCcCCCCCCCCCCCCHHHHHHH
Confidence 23333322 23455667778888877654
No 8
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.97 E-value=2.9e-30 Score=241.37 Aligned_cols=215 Identities=12% Similarity=0.049 Sum_probs=170.9
Q ss_pred chhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCC
Q 011338 22 GAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHG 101 (488)
Q Consensus 22 G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~ 101 (488)
|+||||.|+..|+.+++++|++.++...+.+|.+|+||||+|+..| ..++++.++.......
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~-------~~~~v~~Ll~~~~~~~----------- 63 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQ-------AHEITSFLLSKMENVN----------- 63 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTT-------CHHHHHHHHHTCTTCC-----------
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcC-------CHHHHHHHHhcccccc-----------
Confidence 7899999999999999999999998888889999999999999999 4667777775532110
Q ss_pred CCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHHH
Q 011338 102 DIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVF 181 (488)
Q Consensus 102 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh 181 (488)
. ....+..|.||+|.|+..++.++++.+++.+.. ...+ .++..|.||||
T Consensus 64 -~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--------------------------~~~~---~~~~~g~t~L~ 112 (228)
T 2dzn_A 64 -L-DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLK--------------------------PDLN---KITNQGVTCLH 112 (228)
T ss_dssp -G-GGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSC--------------------------CCTT---CCCTTCCCHHH
T ss_pred -c-cccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC--------------------------cccc---cCCcCCCCHHH
Confidence 0 001345788999999988888777777665410 1111 15677999999
Q ss_pred HHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcC-CccccccccccCCCCcHHHHHHHhCCC
Q 011338 182 IAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMG-AKKNSVATNWDKAHNNILHQAAFLAPS 260 (488)
Q Consensus 182 ~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~-~~~~~~~~~~D~~G~TpLhlA~~~~~~ 260 (488)
+|+..|+.+++++|++.+.+. +.+|..|+||||+|+..|+.+++++|++.+ .+ ++.+|.+|+||||+|+..|+.
T Consensus 113 ~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----~~~~d~~g~t~L~~A~~~~~~ 187 (228)
T 2dzn_A 113 LAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA----VNWQDKQGWTPLFHALAEGHG 187 (228)
T ss_dssp HHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC----SCCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhcCccc----ccCcCCCCCCHHHHHHHcCCH
Confidence 999999999999999998775 466999999999999999999999999998 54 799999999999999999986
Q ss_pred CCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhH
Q 011338 261 SQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSD 308 (488)
Q Consensus 261 ~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~ 308 (488)
++++.+.. + .+.+.+.+|++|+||++++.+
T Consensus 188 ~~v~~Ll~---------------~---~ga~~~~~~~~g~t~l~~A~~ 217 (228)
T 2dzn_A 188 DAAVLLVE---------------K---YGAEYDLVDNKGAKAEDVALN 217 (228)
T ss_dssp HHHHHHHH---------------H---HCCCSCCBCTTSCBGGGGCSS
T ss_pred HHHHHHHH---------------h---cCCCCCccCCCCCcHHHHHHH
Confidence 65532210 0 134466789999999999865
No 9
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.96 E-value=5e-30 Score=249.14 Aligned_cols=211 Identities=12% Similarity=0.011 Sum_probs=170.5
Q ss_pred CCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccC
Q 011338 17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASN 96 (488)
Q Consensus 17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~ 96 (488)
.+|.+|+||||+|+..|+.+++++|++.+ ..++.+|.+|+||||+||..| ..++++.++.....+
T Consensus 54 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g-------~~~~v~~Ll~~ga~~------- 118 (285)
T 3d9h_A 54 GDAVSDWSPMHEAAIHGHQLSLRNLISQG-WAVNIITADHVSPLHEACLGG-------HLSCVKILLKHGAQV------- 118 (285)
T ss_dssp SSSCCSCCHHHHHHHTTCHHHHHHHHHTT-CCSCEECTTCCCHHHHHHHTT-------CHHHHHHHHHTTCCS-------
T ss_pred CCCccCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHCC-------cHHHHHHHHHCCCCC-------
Confidence 47899999999999999999999999985 457899999999999999999 466777777543221
Q ss_pred CCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCc
Q 011338 97 NISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGI 176 (488)
Q Consensus 97 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g 176 (488)
...+..|.||+|.|+..++.++++.+++.+ ...+ .+.+|
T Consensus 119 ---------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----------------------------~~~~----~~~~g 157 (285)
T 3d9h_A 119 ---------NGVTADWHTPLFNACVSGSWDCVNLLLQHG----------------------------ASVQ----PESDL 157 (285)
T ss_dssp ---------SCCCTTCCCHHHHHHHHTCHHHHHHHHHTT----------------------------CCSS----CSCTT
T ss_pred ---------CCCCCCCCCHHHHHHHcCHHHHHHHHHHCC----------------------------CCCC----CCCCC
Confidence 124567889999999888887777766554 2222 23348
Q ss_pred chHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHH
Q 011338 177 KKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAF 256 (488)
Q Consensus 177 ~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~ 256 (488)
.||||+|+..|+.+++++|++.+++. +.+|.+|+||||+|+.+|+.+++++|++.|++ ++ +|.+|+||||+|+.
T Consensus 158 ~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~-~~~~g~t~L~~A~~ 231 (285)
T 3d9h_A 158 ASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESGAD----VN-QGKGQDSPLHAVVR 231 (285)
T ss_dssp SCHHHHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC----TT-CCBTTBCHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC----CC-CCCCCCCHHHHHHH
Confidence 99999999999999999999998875 45699999999999999999999999999876 45 48999999999999
Q ss_pred hCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhH
Q 011338 257 LAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSD 308 (488)
Q Consensus 257 ~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~ 308 (488)
.|+.++++.|. + ...+.+.+|++|+||++++.+
T Consensus 232 ~~~~~~v~~Ll----------------~---~gad~~~~d~~g~t~l~~A~~ 264 (285)
T 3d9h_A 232 TASEELACLLM----------------D---FGADTQAKNAEGKRPVELVPP 264 (285)
T ss_dssp TTCHHHHHHHH----------------H---TTCCTTCCCTTSCCGGGGSCT
T ss_pred cCCHHHHHHHH----------------H---CCCCCCCcCCCCCCHHHHhcC
Confidence 99866553221 0 234567889999999999874
No 10
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.96 E-value=5.3e-30 Score=263.74 Aligned_cols=226 Identities=13% Similarity=0.020 Sum_probs=141.4
Q ss_pred cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338 2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK 81 (488)
Q Consensus 2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~ 81 (488)
|++|++++.+.+. +|..|.||||+|+..|+.+++++|++.+. .++.+|.+|+||||+||..| +.++++.
T Consensus 30 v~~Ll~~g~~~~~---~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~g-------~~~~v~~ 98 (437)
T 1n11_A 30 VKNLLQRGASPNV---SNVKVETPLHMAARAGHTEVAKYLLQNKA-KVNAKAKDDQTPLHCAARIG-------HTNMVKL 98 (437)
T ss_dssp HHHHHHTTCCSCC---SSSCCCCHHHHHHHHTCHHHHHHHHHHTC-CSSCCCTTSCCHHHHHHHHT-------CHHHHHH
T ss_pred HHHHHHcCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHhCCC-CCCCCCCCCCCHHHHHHHCC-------CHHHHHH
Confidence 5667766655443 56667777777777777777777777643 45667777777777777777 3555666
Q ss_pred HhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhh--------hhHHHHHHhhHhHH
Q 011338 82 WIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAI--------KHIYEVKLAHVQTQ 153 (488)
Q Consensus 82 li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~--------~~~~~~~~~h~~~~ 153 (488)
|+....++ ...+..|.||+|.|+..++.++++.+++.+.... ....+.. .+..
T Consensus 99 Ll~~ga~~----------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~---~g~~ 159 (437)
T 1n11_A 99 LLENNANP----------------NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAK---YGKV 159 (437)
T ss_dssp HHHHTCCT----------------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH---TTCH
T ss_pred HHhCCCCC----------------CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHH---cCCH
Confidence 65443211 1133456677777777777777777776553210 0111111 2234
Q ss_pred HHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcC
Q 011338 154 ELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMG 233 (488)
Q Consensus 154 ~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~ 233 (488)
++++.|++.+...+. .+..|.||||+|+..|+.+++++|++.+.+.. ..+.+|+||||+|+..|+.+++++|++.+
T Consensus 160 ~~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 235 (437)
T 1n11_A 160 RVAELLLERDAHPNA---AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH-SPAWNGYTPLHIAAKQNQVEVARSLLQYG 235 (437)
T ss_dssp HHHHHHHHTTCCTTC---CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 566666665544433 45567777777777777777777777766543 34667777777777777777777777776
Q ss_pred CccccccccccCCCCcHHHHHHHhCCCCCccc
Q 011338 234 AKKNSVATNWDKAHNNILHQAAFLAPSSQLDR 265 (488)
Q Consensus 234 ~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~ 265 (488)
.+ ++.+|.+|+||||+|+..|+.++++.
T Consensus 236 ~~----~~~~~~~g~t~L~~A~~~g~~~~v~~ 263 (437)
T 1n11_A 236 GS----ANAESVQGVTPLHLAAQEGHAEMVAL 263 (437)
T ss_dssp CC----TTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred CC----CCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence 54 56677777777777777777665543
No 11
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.96 E-value=6.2e-30 Score=254.14 Aligned_cols=239 Identities=12% Similarity=0.017 Sum_probs=174.9
Q ss_pred CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCcc--------------------------------c
Q 011338 1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRK--------------------------------L 48 (488)
Q Consensus 1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~--------------------------------~ 48 (488)
+|++|++++++.+. ..+..|+||||+||..|+.++|++||+.+.+ .
T Consensus 40 ~V~~LL~~Gadvn~--~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (337)
T 4g8k_A 40 LVQQLLEGGANVNF--QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGAD 117 (337)
T ss_dssp HHHHHHHHTCCTTC--CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC
T ss_pred HHHHHHHCCCCCCc--cCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccch
Confidence 47899998876654 2345699999999999999999999987532 3
Q ss_pred cccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHH
Q 011338 49 AYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMV 128 (488)
Q Consensus 49 ~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~ 128 (488)
++.+|..|.||||+|+..| ....++.++.....+.... ............|.||||.|+..++.+++
T Consensus 118 ~~~~d~~g~t~l~~A~~~~-------~~~~~~~ll~~ga~~~~~~------~~~~~~~~~~~~g~T~L~~A~~~g~~~~v 184 (337)
T 4g8k_A 118 VNECDFYGFTAFMEAAVYG-------KVKALKFLYKRGANVNLRR------KTKEDQERLRKGGATALMDAAEKGHVEVL 184 (337)
T ss_dssp TTCBCTTCCBHHHHHHHTT-------CHHHHHHHHHTTCCTTCCC------CCC-----CTTCSCCHHHHHHHHTCHHHH
T ss_pred hhhhccCCCCHHHHHHHcC-------cHHHHHHHHHcCCCcchhh------ccccccccccCCCCcHHHHHHHCCCHHHH
Confidence 4566788889999999888 4556666665544332100 00011122355789999999999999999
Q ss_pred HHHhhccchhhhhHH---------HHHHhh-HhHHHHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHh
Q 011338 129 WKSLNLFVPAIKHIY---------EVKLAH-VQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKH 198 (488)
Q Consensus 129 ~~ll~~~~~~~~~~~---------~~~~~h-~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~ 198 (488)
+.|++.....++..+ .....+ .....+++.|++.+.+++. +|.+|+||||+|++.|+.++++.|++.
T Consensus 185 ~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~---~d~~g~t~L~~a~~~~~~~~v~~Ll~~ 261 (337)
T 4g8k_A 185 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV---RGERGKTPLILAVEKKHLGLVQRLLEQ 261 (337)
T ss_dssp HHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTC---CCGGGCCHHHHHHHTTCHHHHHHHHTS
T ss_pred HHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCC---cCCCCCCHHHHHHHhhhhHHHHHHHHh
Confidence 999965322222111 111111 2234577778888776654 678899999999999999999999987
Q ss_pred CCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCCCcccc
Q 011338 199 YPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRV 266 (488)
Q Consensus 199 ~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l 266 (488)
....++.+|.+|+||||+|+++|+.++|++|+++|++ +| +.||||+|++.|+.++|+.|
T Consensus 262 ~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd----~n-----~~~~L~~A~~~~~~~iv~~L 320 (337)
T 4g8k_A 262 EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS----TD-----CGDLVMTARRNYDHSLVKVL 320 (337)
T ss_dssp TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCS----ST-----TCCHHHHHHHTTCHHHHHHH
T ss_pred cCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CC-----CCCHHHHHHHcCCHHHHHHH
Confidence 5555667799999999999999999999999999876 33 45699999999998776544
No 12
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.96 E-value=1.2e-29 Score=237.69 Aligned_cols=215 Identities=13% Similarity=0.039 Sum_probs=175.1
Q ss_pred CCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCC
Q 011338 19 GTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNI 98 (488)
Q Consensus 19 d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~ 98 (488)
+..++||||.|+..|+.+.++.|++.++...+.+|.+|.||||+|+..| +.+.++.++.....+
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g-------~~~~v~~Ll~~g~~~--------- 66 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAG-------HTEIVEFLLQLGVPV--------- 66 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHT-------CHHHHHHHHHTTCCS---------
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcC-------cHHHHHHHHHhCCCC---------
Confidence 4568899999999999999999999999888999999999999999999 467777777543221
Q ss_pred CCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcch
Q 011338 99 SHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKK 178 (488)
Q Consensus 99 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~t 178 (488)
...+..|.||+|.|+..++.++++.+++.+ ...+. +|..|.|
T Consensus 67 -------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----------------------------~~~~~---~~~~g~t 108 (231)
T 3aji_A 67 -------NDKDDAGWSPLHIAASAGXDEIVKALLVKG----------------------------AHVNA---VNQNGCT 108 (231)
T ss_dssp -------CCCCTTSCCHHHHHHHHTCHHHHHHHHHTT----------------------------CCTTC---CCTTSCC
T ss_pred -------CCcCCCCCCHHHHHHHcCHHHHHHHHHHcC----------------------------CCCCC---CCCCCCC
Confidence 124557899999999888777777766554 22222 5677999
Q ss_pred HHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhC
Q 011338 179 VVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLA 258 (488)
Q Consensus 179 pLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~ 258 (488)
|||+|+..|+.+++++|++.+.+. ...|..|+||||+|+..|+.+++++|++.+.+ ++.+|.+|+||||+|+..|
T Consensus 109 ~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~ 183 (231)
T 3aji_A 109 PLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLFYKAS----TNIQDTEGNTPLHLACDEE 183 (231)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----SCCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC----ccccCCCCCCHHHHHHHCC
Confidence 999999999999999999998775 45689999999999999999999999999876 7899999999999999999
Q ss_pred CCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhHHHH
Q 011338 259 PSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQHK 311 (488)
Q Consensus 259 ~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~~~~ 311 (488)
+.++++.+. + ...+.+.+|++|+||++++.+...
T Consensus 184 ~~~~v~~Ll----------------~---~ga~~~~~~~~g~t~l~~A~~~~~ 217 (231)
T 3aji_A 184 RVEEAKFLV----------------T---QGASIYIENKEEKTPLQVAKGGLG 217 (231)
T ss_dssp CHHHHHHHH----------------H---TTCCSCCCCTTSCCHHHHSCHHHH
T ss_pred CHHHHHHHH----------------H---CCCCCCCCCCCCCCHHHHHHhhHH
Confidence 866553221 1 123456788999999999876543
No 13
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.96 E-value=3e-29 Score=233.77 Aligned_cols=204 Identities=11% Similarity=-0.030 Sum_probs=167.3
Q ss_pred CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338 1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK 80 (488)
Q Consensus 1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~ 80 (488)
++++|++++.+... ..|.+|+||||+|+..|+.+++++|++.+ ..++.+|.+|+||||+|+..| ..++++
T Consensus 6 ~i~~Ll~~g~~~~~--~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~-------~~~~v~ 75 (223)
T 2f8y_A 6 VISDFIYQGASLHN--QTDRTGETALHLAARYSRSDAAKRLLEAS-ADANIQDNMGRTPLHAAVSAD-------AQGVFQ 75 (223)
T ss_dssp CEETTEETTCCTTC--CCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTT-------CHHHHH
T ss_pred HHHHHHHcCCCccc--ccCCCCCchHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcC-------CHHHHH
Confidence 57899998875443 36889999999999999999999999985 457889999999999999999 466777
Q ss_pred HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHh
Q 011338 81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVC 160 (488)
Q Consensus 81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~ 160 (488)
.++.... .. ....+..+.||+|.|+..++.++++.+++.+
T Consensus 76 ~Ll~~~~-----------~~----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g------------------------- 115 (223)
T 2f8y_A 76 ILIRNRA-----------TD----LDARMHDGTTPLILAARLAVEGMLEDLINSH------------------------- 115 (223)
T ss_dssp HHHHBTT-----------SC----TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-------------------------
T ss_pred HHHHcCC-----------CC----cccCCCCCCcHHHHHHHhCcHHHHHHHHHcC-------------------------
Confidence 7765321 01 1123557889999999888777777666544
Q ss_pred hhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCcccccc
Q 011338 161 REISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVA 240 (488)
Q Consensus 161 ~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~ 240 (488)
...+. +|..|.||||+|+..|+.+++++|++.+++. +.+|..|+||||+|+.+|+.+++++|++.|++ +
T Consensus 116 ---~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~ 184 (223)
T 2f8y_A 116 ---ADVNA---VDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDHFAN----R 184 (223)
T ss_dssp ---CCTTC---BCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----T
T ss_pred ---CCCcC---cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC----C
Confidence 22222 5677999999999999999999999998775 45699999999999999999999999999886 6
Q ss_pred ccccCCCCcHHHHHHHhCCCCCccc
Q 011338 241 TNWDKAHNNILHQAAFLAPSSQLDR 265 (488)
Q Consensus 241 ~~~D~~G~TpLhlA~~~~~~~~v~~ 265 (488)
+.+|.+|+||||+|+..++.++++.
T Consensus 185 ~~~~~~g~t~l~~A~~~~~~~i~~~ 209 (223)
T 2f8y_A 185 DITDHMDRLPRDIAQERMHHDIVRL 209 (223)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred ccccccCCCHHHHHHHhcchHHHHH
Confidence 8999999999999999998766543
No 14
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.96 E-value=1.3e-29 Score=254.58 Aligned_cols=217 Identities=12% Similarity=-0.025 Sum_probs=176.6
Q ss_pred CCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccC
Q 011338 17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASN 96 (488)
Q Consensus 17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~ 96 (488)
..|.+|.||||+||..|+.+++++|++.+ ..++.+|.+|.||||+||..| +.++++.|+.....+
T Consensus 15 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~g-------~~~~v~~Ll~~g~~~------- 79 (364)
T 3ljn_A 15 KSDDENMEKIHVAARKGQTDEVRRLIETG-VSPTIQNRFGCTALHLACKFG-------CVDTAKYLASVGEVH------- 79 (364)
T ss_dssp -CCHHHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHHC-------CHHHHHHHHHHCCCC-------
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCcHHHHHHHcC-------CHHHHHHHHHCCCCc-------
Confidence 46889999999999999999999999985 457899999999999999999 467788777654311
Q ss_pred CCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccch---hhhh-----------------H--HHHHHhh----H
Q 011338 97 NISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVP---AIKH-----------------I--YEVKLAH----V 150 (488)
Q Consensus 97 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~---~~~~-----------------~--~~~~~~h----~ 150 (488)
....|.||||.|+..++.++++.|++.+.. ..+. . ......| .
T Consensus 80 -----------~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~ 148 (364)
T 3ljn_A 80 -----------SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGL 148 (364)
T ss_dssp -----------CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHS
T ss_pred -----------cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHc
Confidence 234689999999999999999999987311 0100 0 0011112 2
Q ss_pred h--HHHHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCc----eeeccCCCccHHHHHHhcCChh
Q 011338 151 Q--TQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDI----IWCYDDYNRHIFSYATLQRQEK 224 (488)
Q Consensus 151 ~--~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~----~~~~d~~g~t~Lh~A~~~~~~~ 224 (488)
+ ..++++.|++.+.+.+. +|..|.||||+|+..|+.+++++|++.+++. .+..|..|+||||+|+.+|+.+
T Consensus 149 g~~~~~~v~~Ll~~ga~~~~---~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~ 225 (364)
T 3ljn_A 149 GPEYLEMIKILVQLGASPTA---KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWED 225 (364)
T ss_dssp CGGGHHHHHHHHHHTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHH
T ss_pred CCchHHHHHHHHHcCCCCcc---cCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHH
Confidence 3 57888888888776654 6788999999999999999999999998872 4456899999999999999999
Q ss_pred HHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCCCcccc
Q 011338 225 IFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRV 266 (488)
Q Consensus 225 iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l 266 (488)
++++|++.|++ ++.+|.+|+||||+|+..|+.++++.|
T Consensus 226 ~v~~Ll~~gad----~~~~d~~g~tpL~~A~~~g~~~~v~~L 263 (364)
T 3ljn_A 226 VAMRFVEMGID----VNMEDNEHTVPLYLSVRAAMVLLTKEL 263 (364)
T ss_dssp HHHHHHTTTCC----TTCCCTTSCCHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHcCCC----CCCCCCCCCCHHHHHHHhChHHHHHHH
Confidence 99999999887 799999999999999999998877554
No 15
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.96 E-value=1.6e-29 Score=255.18 Aligned_cols=222 Identities=10% Similarity=-0.011 Sum_probs=177.2
Q ss_pred CC-CCchhHHHHHHHcCCccHHHHHHH-------hCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhh
Q 011338 18 KG-TNGAMLLTSCIIDDIFDIPLDLLQ-------RYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYI 89 (488)
Q Consensus 18 ~d-~~G~T~LH~A~~~g~~div~~LL~-------~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v 89 (488)
+| .+|+||||+|+..|+.+++++|+. ..+.+++.+|.+|.||||+|+..| +.++++.|+....++
T Consensus 120 ~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g-------~~~iv~~Ll~~ga~~ 192 (373)
T 2fo1_E 120 IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLAR-------RRRLVAYLMKAGADP 192 (373)
T ss_dssp CCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHT-------CHHHHHHHHHTTCCS
T ss_pred cCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcC-------hHHHHHHHHHCCCCC
Confidence 44 789999999999999999998874 346678999999999999999999 467777777553322
Q ss_pred hhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccc--hhhhhH---------HHHHHhhHhHHHHHHH
Q 011338 90 RSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFV--PAIKHI---------YEVKLAHVQTQELLSC 158 (488)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~--~~~~~~---------~~~~~~h~~~~~il~~ 158 (488)
...+..|.||||.|+..++.++++.+++.+. ..++.. .+....+....++++.
T Consensus 193 ----------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~ 256 (373)
T 2fo1_E 193 ----------------TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKL 256 (373)
T ss_dssp ----------------CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHH
T ss_pred ----------------cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHH
Confidence 1245578899999999999999999998762 111111 1121111226788888
Q ss_pred HhhhhcccCchh-----hhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcC
Q 011338 159 VCREISTQGESQ-----FEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMG 233 (488)
Q Consensus 159 l~~~~~~~~~~~-----~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~ 233 (488)
|++.+.+.+... .+|..|.||||+|+..|+.+++++|++.++...+.+|.+|+||||+|+.+|+.+++++|++.|
T Consensus 257 Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g 336 (373)
T 2fo1_E 257 LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG 336 (373)
T ss_dssp HHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 888877665321 246689999999999999999999999885556677999999999999999999999999998
Q ss_pred CccccccccccCCCCcHHHHHHHhCCCCCcccc
Q 011338 234 AKKNSVATNWDKAHNNILHQAAFLAPSSQLDRV 266 (488)
Q Consensus 234 ~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l 266 (488)
++ ++.+|.+|+||||+|+..|+.++++.|
T Consensus 337 ad----~~~~d~~g~t~l~~A~~~g~~~iv~~L 365 (373)
T 2fo1_E 337 AS----VEAVDATDHTARQLAQANNHHNIVDIF 365 (373)
T ss_dssp CC----SSCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred CC----ccCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 87 799999999999999999997766443
No 16
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.96 E-value=7.5e-30 Score=245.80 Aligned_cols=215 Identities=13% Similarity=0.045 Sum_probs=123.3
Q ss_pred CCCCCchhHHHHHHHcCCccHHHHHHHhCccc-------cccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhh
Q 011338 17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKL-------AYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYI 89 (488)
Q Consensus 17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~-------~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v 89 (488)
++|..+.+|||.||..|+.++|++||+.+... ++..|..|.||||.|+..++.. ..++.++....++
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~------~~v~~Ll~~Gadv 79 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQ------KRLAKVPASGLGV 79 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------------CCCCT
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHH------HHHHHHHHCCCCC
Confidence 37888999999999999999999999886542 4567888999999999877321 1233333222211
Q ss_pred hhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCch
Q 011338 90 RSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGES 169 (488)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~ 169 (488)
...+..|.||||.|+..++.++++.|++.+. +.+.
T Consensus 80 ----------------n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a----------------------------~~~~- 114 (269)
T 4b93_B 80 ----------------NVTSQDGSSPLHVAALHGRADLIPLLLKHGA----------------------------NAGA- 114 (269)
T ss_dssp ----------------TCCCTTSCCHHHHHHHTTCTTHHHHHHHTTC----------------------------CTTC-
T ss_pred ----------------CCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC----------------------------CcCc-
Confidence 1245678999999999988888887776552 1111
Q ss_pred hhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCc
Q 011338 170 QFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNN 249 (488)
Q Consensus 170 ~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~T 249 (488)
++.+|.||+|+|+..|+.++++.|++.+++. +.+|..|+||||+|+.+|+.+++++|++.|++ +|.+|.+|+|
T Consensus 115 --~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad----vn~~~~~g~t 187 (269)
T 4b93_B 115 --RNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSGGHHELVALLLQHGAS----INASNNKGNT 187 (269)
T ss_dssp --CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCC----TTCBCTTSCB
T ss_pred --cCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC----CCccccCCCc
Confidence 3455677777777777777777777766654 34466777777777777777777777776655 5667777777
Q ss_pred HHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhH
Q 011338 250 ILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSD 308 (488)
Q Consensus 250 pLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~ 308 (488)
|||+|+..|+.++++.|. + ...+++.+|++|+||++++.+
T Consensus 188 ~Lh~A~~~g~~~~v~~Ll----------------~---~Gad~~~~d~~G~TpL~~A~~ 227 (269)
T 4b93_B 188 ALHEAVIEKHVFVVELLL----------------L---HGASVQVLNKRQRTAVDCAEQ 227 (269)
T ss_dssp HHHHHHHTTCHHHHHHHH----------------H---TTCCSCCCCTTSCCSGGGSCT
T ss_pred HHHHHHHcCCHHHHHHHH----------------H---CCCCCCCcCCCCCCHHHHHHh
Confidence 777777776655443220 0 122345666677777776643
No 17
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.96 E-value=5.6e-29 Score=239.80 Aligned_cols=243 Identities=14% Similarity=0.067 Sum_probs=159.9
Q ss_pred CchhHHHHHHHcCCccHHHHHHHhCccccccc-cCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCC
Q 011338 21 NGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQ-DNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNIS 99 (488)
Q Consensus 21 ~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~-d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~ 99 (488)
+|+||||.|+..|+.+++++|++.+++ ++.+ +..|+||||+|+..| +.++++.++.....+
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~g-------~~~~v~~Ll~~g~~~---------- 65 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMS-------REDIVELLLRHGADP---------- 65 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTT-------CHHHHHHHHHTTCCT----------
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCC-cccccCCCCCcHHHHHHHcC-------CHHHHHHHHHcCCCC----------
Confidence 466677777777777777777766544 3333 566667777777666 345555555432211
Q ss_pred CCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchh-hhhHHHHHHhh----HhHHHHHHHHhhhhcccCchh----
Q 011338 100 HGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPA-IKHIYEVKLAH----VQTQELLSCVCREISTQGESQ---- 170 (488)
Q Consensus 100 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~h----~~~~~il~~l~~~~~~~~~~~---- 170 (488)
...+..|.||+|.|+..++.++++.+++.+... ..........| .+..++++.+++.+...+...
T Consensus 66 ------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~ 139 (285)
T 1wdy_A 66 ------VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 139 (285)
T ss_dssp ------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCH
T ss_pred ------cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHH
Confidence 112345666777777666677776666654211 00000000011 123455666666554443211
Q ss_pred ---hhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCC----hhHHHHHHhcCCccccccccc
Q 011338 171 ---FEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQ----EKIFNLIYTMGAKKNSVATNW 243 (488)
Q Consensus 171 ---~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~----~~iv~~Ll~~~~~~~~~~~~~ 243 (488)
..+..|.||||+|+..|+.+++++|++..+...+..|..|+||||+|+..++ .+++++|++.|.+ ++.+
T Consensus 140 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~----~~~~ 215 (285)
T 1wdy_A 140 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD----VNVR 215 (285)
T ss_dssp HHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC----SSCC
T ss_pred HHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCC----CCCc
Confidence 1267799999999999999999999998444456679999999999999999 8999999999876 7899
Q ss_pred cCCCCcHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhHH
Q 011338 244 DKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQ 309 (488)
Q Consensus 244 D~~G~TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~~ 309 (488)
|.+|+||||+|+..|+.++++.+. + ..+.+.+.+|.+|+||++++.+.
T Consensus 216 ~~~g~t~L~~A~~~~~~~~v~~Ll----------------~--~~g~~~~~~~~~g~t~l~~A~~~ 263 (285)
T 1wdy_A 216 GERGKTPLILAVEKKHLGLVQRLL----------------E--QEHIEINDTDSDGKTALLLAVEL 263 (285)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHH----------------H--SSSCCTTCCCTTSCCHHHHHHHT
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHH----------------h--ccCCCccccCCCCCcHHHHHHHc
Confidence 999999999999999865543221 0 02344677889999999998663
No 18
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.96 E-value=8.4e-29 Score=238.55 Aligned_cols=231 Identities=11% Similarity=0.008 Sum_probs=182.3
Q ss_pred CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338 1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK 80 (488)
Q Consensus 1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~ 80 (488)
+|++|++++++.+. ..+..|.||||+|+..|+.+++++|++.+ ..++.+|.+|.||||+|+..| ..++++
T Consensus 20 ~v~~Ll~~g~~~~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~-------~~~~v~ 89 (285)
T 1wdy_A 20 LVQQLLEGGANVNF--QEEEGGWTPLHNAVQMSREDIVELLLRHG-ADPVLRKKNGATPFLLAAIAG-------SVKLLK 89 (285)
T ss_dssp HHHHHHHTTCCTTC--CCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHHT-------CHHHHH
T ss_pred HHHHHHHcCCCccc--ccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcC-------CHHHHH
Confidence 36788888875543 34788999999999999999999999985 457889999999999999999 466777
Q ss_pred HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhh---------HHH--HHHhh
Q 011338 81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKH---------IYE--VKLAH 149 (488)
Q Consensus 81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~---------~~~--~~~~h 149 (488)
.++.....+ ...+..|.||+|.|+..++.++++.+++.+...-.. ... ....|
T Consensus 90 ~Ll~~g~~~----------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~ 153 (285)
T 1wdy_A 90 LFLSKGADV----------------NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM 153 (285)
T ss_dssp HHHHTTCCT----------------TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHH
T ss_pred HHHHcCCCC----------------CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHH
Confidence 777543322 123557889999999999999999999876421100 000 01112
Q ss_pred ----HhHHHHHHHHhhh-hcccCchhhhhcCcchHHHHHHHcCc----HHHHHHHHHhCCCceeeccCCCccHHHHHHhc
Q 011338 150 ----VQTQELLSCVCRE-ISTQGESQFEKVGIKKVVFIAVKHGI----VEFITEIMKHYPDIIWCYDDYNRHIFSYATLQ 220 (488)
Q Consensus 150 ----~~~~~il~~l~~~-~~~~~~~~~~~~~g~tpLh~Aa~~G~----~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 220 (488)
.+..++++.+++. +...+. +|..|.||||+|+..|+ .+++++|++.+.+. +.+|..|+||||+|+.+
T Consensus 154 ~A~~~~~~~~v~~Ll~~~~~~~~~---~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 229 (285)
T 1wdy_A 154 DAAEKGHVEVLKILLDEMGADVNA---CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEK 229 (285)
T ss_dssp HHHHHTCHHHHHHHHHTSCCCTTC---CCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHhcCCCCCc---cCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHc
Confidence 3346788888875 544443 67789999999999999 99999999998875 45699999999999999
Q ss_pred CChhHHHHHHh-cCCccccccccccCCCCcHHHHHHHhCCCCCccc
Q 011338 221 RQEKIFNLIYT-MGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDR 265 (488)
Q Consensus 221 ~~~~iv~~Ll~-~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~ 265 (488)
|+.+++++|++ .+.+ ++.+|.+|+||||+|+..|+.++++.
T Consensus 230 ~~~~~v~~Ll~~~g~~----~~~~~~~g~t~l~~A~~~~~~~i~~~ 271 (285)
T 1wdy_A 230 KHLGLVQRLLEQEHIE----INDTDSDGKTALLLAVELKLKKIAEL 271 (285)
T ss_dssp TCHHHHHHHHHSSSCC----TTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHhccCCC----ccccCCCCCcHHHHHHHcCcHHHHHH
Confidence 99999999999 5665 79999999999999999998766643
No 19
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.96 E-value=8.4e-30 Score=240.02 Aligned_cols=222 Identities=9% Similarity=0.040 Sum_probs=166.4
Q ss_pred CCCCCchhHHHHHHHcCCccHHHHHHHhCcc---ccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhcc
Q 011338 17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRK---LAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAY 93 (488)
Q Consensus 17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~---~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~ 93 (488)
.+|.+|+||||+|+..|+.+++++|++..+. .++.+|..|+||||+|+..| ..++++.++....
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~-------~~~~v~~Ll~~g~------ 69 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITN-------QPEIAEALLGAGC------ 69 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTT-------CHHHHHCCCSCCC------
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcC-------CHHHHHHHHHcCC------
Confidence 4688999999999999999999999988653 58899999999999999999 3555555543221
Q ss_pred ccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhh
Q 011338 94 ASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEK 173 (488)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~ 173 (488)
+....+..|.||||.|+..++.++++.+++.+.... ........+
T Consensus 70 ----------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-------------------------~~~~~~~~~ 114 (236)
T 1ikn_D 70 ----------DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH-------------------------LHSILKATN 114 (236)
T ss_dssp ----------CSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTS-------------------------SSCGGGCCC
T ss_pred ----------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchh-------------------------HHHHhhccC
Confidence 112245678999999999999988888887653210 000011256
Q ss_pred cCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccC-CCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHH
Q 011338 174 VGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDD-YNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILH 252 (488)
Q Consensus 174 ~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLh 252 (488)
..|.||||+|+..|+.+++++|++.+++... +|. .|+||||+|+..|+.+++++|++.|++ ++.+|.+|+||||
T Consensus 115 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~tpl~ 189 (236)
T 1ikn_D 115 YNGHTCLHLASIHGYLGIVELLVSLGADVNA-QEPCNGRTALHLAVDLQNPDLVSLLLKCGAD----VNRVTYQGYSPYQ 189 (236)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC----SCCCCTTCCCGGG
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCcccCCCCCHHH
Confidence 7799999999999999999999999988654 466 999999999999999999999999887 7999999999999
Q ss_pred HHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhH
Q 011338 253 QAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSD 308 (488)
Q Consensus 253 lA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~ 308 (488)
+|+..|+.++++.|.. .-........|.+|.||.+...+
T Consensus 190 ~A~~~~~~~~~~~Ll~-----------------~ga~~~~~~~~~~~~~~~~~~~~ 228 (236)
T 1ikn_D 190 LTWGRPSTRIQQQLGQ-----------------LTLENLQMLPESEDEESYDTESE 228 (236)
T ss_dssp GCTTSSCHHHHHHHHT-----------------TSCGGGSSCCCCCTTTCCCCC--
T ss_pred HHHccCchHHHHHHHH-----------------cchhhhhcCCccchHHHHhhhcc
Confidence 9999998766543311 00112234678899999887543
No 20
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.95 E-value=3.8e-29 Score=243.76 Aligned_cols=219 Identities=13% Similarity=-0.009 Sum_probs=166.1
Q ss_pred CCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCC
Q 011338 18 KGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNN 97 (488)
Q Consensus 18 ~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~ 97 (488)
.+.+|.||||.||..|+.+++++|++.+. .++.+|.+|.||||+||..| +.++++.|+.....+
T Consensus 36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~g-------~~~~v~~Ll~~ga~~-------- 99 (299)
T 1s70_B 36 VKFDDGAVFLAACSSGDTEEVLRLLERGA-DINYANVDGLTALHQACIDD-------NVDMVKFLVENGANI-------- 99 (299)
T ss_dssp CEECHHHHHHHHHHHTCHHHHHHHHHHCC-CTTCBCTTCCBHHHHHHHTT-------CHHHHHHHHHTTCCT--------
T ss_pred cccCCccHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCCCHHHHHHHcC-------CHHHHHHHHHCCCCC--------
Confidence 45678999999999999999999999964 57899999999999999999 467788777654322
Q ss_pred CCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcc
Q 011338 98 ISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIK 177 (488)
Q Consensus 98 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~ 177 (488)
...+..|.||||.|+..++.++++.|++.+. ..+. .+.+|.
T Consensus 100 --------~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~----------------------------~~~~---~~~~g~ 140 (299)
T 1s70_B 100 --------NQPDNEGWIPLHAAASCGYLDIAEYLISQGA----------------------------HVGA---VNSEGD 140 (299)
T ss_dssp --------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC----------------------------CTTC---CCTTSC
T ss_pred --------CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC----------------------------CCCC---cCCCCC
Confidence 1235578999999999888877777766542 2221 466788
Q ss_pred hHHHHHHHcCcHHHHHHHHHhCCCc--------------------------eeeccCCCccHHHHHHhcCChhHHHHHHh
Q 011338 178 KVVFIAVKHGIVEFITEIMKHYPDI--------------------------IWCYDDYNRHIFSYATLQRQEKIFNLIYT 231 (488)
Q Consensus 178 tpLh~Aa~~G~~~~v~~Ll~~~~~~--------------------------~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~ 231 (488)
||||+|+..|+.++++.++...... ....+..|+||||+|+.+|+.+++++|++
T Consensus 141 t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 220 (299)
T 1s70_B 141 TPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ 220 (299)
T ss_dssp CHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred CHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHH
Confidence 9999999888888888777543221 22346788999999999999999999998
Q ss_pred cCCccccccccccCCCCcHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhHHHH
Q 011338 232 MGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQHK 311 (488)
Q Consensus 232 ~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~~~~ 311 (488)
.|++ +|.+|.+|+||||+|+..|+.++++.|. + ...+.+.+|++|+||++++.+...
T Consensus 221 ~g~d----~~~~d~~g~tpL~~A~~~~~~~~v~~Ll----------------~---~gad~~~~d~~g~t~l~~A~~~~~ 277 (299)
T 1s70_B 221 ARYD----VNIKDYDGWTPLHAAAHWGKEEACRILV----------------E---NLCDMEAVNKVGQTAFDVADEDIL 277 (299)
T ss_dssp TTCC----TTCCCTTCCCHHHHHHHTTCHHHHHHHH----------------H---TTCCTTCCCTTSCCTTTSCCSGGG
T ss_pred cCCC----CCCcCCCCCcHHHHHHhcCCHHHHHHHH----------------H---cCCCCCCcCCCCCCHHHHHHHHHH
Confidence 8876 7888999999999999988866553221 0 123456788899999998876544
Q ss_pred HHH
Q 011338 312 KLV 314 (488)
Q Consensus 312 ~l~ 314 (488)
+..
T Consensus 278 ~~l 280 (299)
T 1s70_B 278 GYL 280 (299)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 21
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.95 E-value=1.3e-28 Score=240.04 Aligned_cols=220 Identities=12% Similarity=-0.010 Sum_probs=172.5
Q ss_pred CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338 1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK 80 (488)
Q Consensus 1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~ 80 (488)
+|++|++.+.+.+. .|.+|.||||+|+..|+.+++++|++.+ ..++.+|.+|+||||+|+..| ..++++
T Consensus 55 ~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~tpL~~A~~~g-------~~~~v~ 123 (299)
T 1s70_B 55 EVLRLLERGADINY---ANVDGLTALHQACIDDNVDMVKFLVENG-ANINQPDNEGWIPLHAAASCG-------YLDIAE 123 (299)
T ss_dssp HHHHHHHHCCCTTC---BCTTCCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHT-------CHHHHH
T ss_pred HHHHHHHcCCCCcc---cCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHcC-------CHHHHH
Confidence 36788888876544 7889999999999999999999999984 557899999999999999999 466777
Q ss_pred HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHh
Q 011338 81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVC 160 (488)
Q Consensus 81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~ 160 (488)
.++.....+ ...+..|.||+|.|+..++.++++.++......+......... .....+..++
T Consensus 124 ~Ll~~g~~~----------------~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~--~~~~~~~~~l 185 (299)
T 1s70_B 124 YLISQGAHV----------------GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEER--IMLRDARQWL 185 (299)
T ss_dssp HHHHTTCCT----------------TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHhCCCCC----------------CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhh--HHHHHHHHHH
Confidence 777543322 1245578999999999999999998887665444333222211 1223334444
Q ss_pred hhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCcccccc
Q 011338 161 REISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVA 240 (488)
Q Consensus 161 ~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~ 240 (488)
......+. ..+..|.||||+|+..|+.+++++|++.+++. +.+|..|+||||+|+.+|+.+++++|++.|++ +
T Consensus 186 ~~~~~~~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad----~ 258 (299)
T 1s70_B 186 NSGHINDV--RHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENLCD----M 258 (299)
T ss_dssp HHTCCCCC--CCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----T
T ss_pred hccCcchh--hhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCC----C
Confidence 43322221 24677999999999999999999999998775 45699999999999999999999999999987 7
Q ss_pred ccccCCCCcHHHHHHH
Q 011338 241 TNWDKAHNNILHQAAF 256 (488)
Q Consensus 241 ~~~D~~G~TpLhlA~~ 256 (488)
+.+|.+|+||||+|+.
T Consensus 259 ~~~d~~g~t~l~~A~~ 274 (299)
T 1s70_B 259 EAVNKVGQTAFDVADE 274 (299)
T ss_dssp TCCCTTSCCTTTSCCS
T ss_pred CCcCCCCCCHHHHHHH
Confidence 8999999999999965
No 22
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.95 E-value=8.2e-29 Score=233.32 Aligned_cols=206 Identities=12% Similarity=0.015 Sum_probs=163.0
Q ss_pred cccccc----cCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhh
Q 011338 2 VRYLYR----ETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLA 77 (488)
Q Consensus 2 v~~L~~----~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~ 77 (488)
+++|++ .+.+.+ .+|.+|.||||+|+..|+.+++++|++.+ ..++.+|.+|.||||+|+..| ..+
T Consensus 25 v~~Ll~~~~~~~~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~-------~~~ 93 (241)
T 1k1a_A 25 VHRLVNLFQQGGRELD---IYNNLRQTPLHLAVITTLPSVVRLLVTAG-ASPMALDRHGQTAAHLACEHR-------SPT 93 (241)
T ss_dssp HHHHHHHHHHTTCCSC---CCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTT-------CHH
T ss_pred HHHHHHHHHhcCCCCC---cccccCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcC-------CHH
Confidence 455655 333333 37889999999999999999999999985 557889999999999999998 456
Q ss_pred HHHHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHH
Q 011338 78 FWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLS 157 (488)
Q Consensus 78 ~~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~ 157 (488)
.++.++..... ........+..|.||+|.|+..++.++++.+++.+
T Consensus 94 ~~~~Ll~~~~~------------~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g---------------------- 139 (241)
T 1k1a_A 94 CLRALLDSAAP------------GTLDLEARNYDGLTALHVAVNTECQETVQLLLERG---------------------- 139 (241)
T ss_dssp HHHHHHHHSCT------------TSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT----------------------
T ss_pred HHHHHHHcCCC------------ccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcC----------------------
Confidence 67766654321 01111224567899999999888777777666554
Q ss_pred HHhhhhcccCchhhhh-cCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCcc
Q 011338 158 CVCREISTQGESQFEK-VGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKK 236 (488)
Q Consensus 158 ~l~~~~~~~~~~~~~~-~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~ 236 (488)
.+.+. .+ ..|.||||+|++.|+.+++++|++.+.+. +..|..|+||||+|+.+|+.+++++|++.|++
T Consensus 140 ------~~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~- 208 (241)
T 1k1a_A 140 ------ADIDA---VDIKSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRSGAD- 208 (241)
T ss_dssp ------CCTTC---CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-
T ss_pred ------CCccc---ccccCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-
Confidence 22222 33 56999999999999999999999998875 45699999999999999999999999999987
Q ss_pred ccccccccCCCCcHHHHHHHhCCCCCcccc
Q 011338 237 NSVATNWDKAHNNILHQAAFLAPSSQLDRV 266 (488)
Q Consensus 237 ~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l 266 (488)
++.+|.+|+||||+|+..|+.++++.+
T Consensus 209 ---~~~~~~~g~tpl~~A~~~~~~~i~~~l 235 (241)
T 1k1a_A 209 ---SSLKNCHNDTPLMVARSRRVIDILRGK 235 (241)
T ss_dssp ---TTCCCTTSCCTTTTCSSHHHHHHHTC-
T ss_pred ---CCCcCCCCCCHHHHHHhcCcHHHHhhh
Confidence 789999999999999999887776554
No 23
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.95 E-value=3.7e-28 Score=227.90 Aligned_cols=209 Identities=11% Similarity=-0.010 Sum_probs=162.7
Q ss_pred CchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCC
Q 011338 21 NGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISH 100 (488)
Q Consensus 21 ~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~ 100 (488)
.|+||||.|+..|+.+++++|++..+.+++.+|.+|+||||+|+..| ..++++.++.....+...
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g-------~~~~v~~Ll~~~~~~~~~-------- 66 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYD-------NLEAAMVLMEAAPELVFE-------- 66 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTT-------CHHHHHHHHHHCGGGGGC--------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcC-------CHHHHHHHHHcCchhccc--------
Confidence 48999999999999999999999877788999999999999999999 467888887665433110
Q ss_pred CCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHH
Q 011338 101 GDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVV 180 (488)
Q Consensus 101 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpL 180 (488)
.....+..|.||||.|+..++.++++.+++.+...- ....... . .. .....|..|.|||
T Consensus 67 ---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~~------------~----~~-~~~~~~~~g~t~L 125 (232)
T 2rfa_A 67 ---PMTSELYEGQTALHIAVINQNVNLVRALLARGASVS-ARATGSV------------F----HY-RPHNLIYYGEHPL 125 (232)
T ss_dssp ---CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCSGG------------G----SC-CTTCSCCCCSSHH
T ss_pred ---cccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCC-cccCCcc------------e----ee-cccccccCCCCHH
Confidence 112235578999999999999999999888763211 0000000 0 00 0111456799999
Q ss_pred HHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHH----HHHHhcCCccc--cccccccCCCCcHHHHH
Q 011338 181 FIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIF----NLIYTMGAKKN--SVATNWDKAHNNILHQA 254 (488)
Q Consensus 181 h~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv----~~Ll~~~~~~~--~~~~~~D~~G~TpLhlA 254 (488)
|+|+..|+.+++++|++.+++. +.+|.+|+||||+|+.+|+.+++ ++|++.|++.. .+.+.+|.+|+||||+|
T Consensus 126 ~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A 204 (232)
T 2rfa_A 126 SFAACVGSEEIVRLLIEHGADI-RAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLA 204 (232)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHH
Confidence 9999999999999999998875 45699999999999999999988 99999987521 22368999999999999
Q ss_pred HHhCCCCCcccc
Q 011338 255 AFLAPSSQLDRV 266 (488)
Q Consensus 255 ~~~~~~~~v~~l 266 (488)
+..|+.++++.|
T Consensus 205 ~~~g~~~~v~~L 216 (232)
T 2rfa_A 205 GVEGNIVMFQHL 216 (232)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHcCCHHHHHHH
Confidence 999998776543
No 24
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.95 E-value=7.2e-29 Score=232.47 Aligned_cols=200 Identities=11% Similarity=-0.057 Sum_probs=161.8
Q ss_pred cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338 2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK 81 (488)
Q Consensus 2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~ 81 (488)
+++|+...+.. ...+|.+|.||||+|+..|+.+++++|++.+ ..++.+|..|+||||+|+..| ..++++.
T Consensus 22 v~~ll~~~~~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~-------~~~~v~~ 91 (231)
T 3aji_A 22 LKERILADKSL--ATRTDQDSRTALHWACSAGHTEIVEFLLQLG-VPVNDKDDAGWSPLHIAASAG-------XDEIVKA 91 (231)
T ss_dssp HHHHHHHCGGG--GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHHT-------CHHHHHH
T ss_pred HHHHHHhchhh--hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhC-CCCCCcCCCCCCHHHHHHHcC-------HHHHHHH
Confidence 45666665532 2247889999999999999999999999985 457889999999999999998 4667777
Q ss_pred HhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhh
Q 011338 82 WIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCR 161 (488)
Q Consensus 82 li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~ 161 (488)
++.....+ ...+..|.||+|.|+..++.++++.+++.+
T Consensus 92 Ll~~g~~~----------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-------------------------- 129 (231)
T 3aji_A 92 LLVKGAHV----------------NAVNQNGCTPLHYAASKNRHEIAVMLLEGG-------------------------- 129 (231)
T ss_dssp HHHTTCCT----------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--------------------------
T ss_pred HHHcCCCC----------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC--------------------------
Confidence 76543322 123557889999999888777777666543
Q ss_pred hhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccc
Q 011338 162 EISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVAT 241 (488)
Q Consensus 162 ~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~ 241 (488)
...+. ++..|.||||+|+..|+.+++++|++.+.+. +.+|..|+||||+|+.+|+.+++++|++.|++ ++
T Consensus 130 --~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~ 199 (231)
T 3aji_A 130 --ANPDA---KDHYDATAMHRAAAKGNLKMVHILLFYKAST-NIQDTEGNTPLHLACDEERVEEAKFLVTQGAS----IY 199 (231)
T ss_dssp --CCTTC---CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----SC
T ss_pred --CCCCC---cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc-cccCCCCCCHHHHHHHCCCHHHHHHHHHCCCC----CC
Confidence 22222 5677999999999999999999999998775 45699999999999999999999999999887 78
Q ss_pred cccCCCCcHHHHHHHhCCCCCc
Q 011338 242 NWDKAHNNILHQAAFLAPSSQL 263 (488)
Q Consensus 242 ~~D~~G~TpLhlA~~~~~~~~v 263 (488)
.+|.+|+||||+|+..++.+++
T Consensus 200 ~~~~~g~t~l~~A~~~~~~~i~ 221 (231)
T 3aji_A 200 IENKEEKTPLQVAKGGLGLILK 221 (231)
T ss_dssp CCCTTSCCHHHHSCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHhhHHHHHH
Confidence 9999999999999988765444
No 25
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.95 E-value=1.6e-28 Score=236.69 Aligned_cols=215 Identities=11% Similarity=-0.027 Sum_probs=148.1
Q ss_pred CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338 1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK 80 (488)
Q Consensus 1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~ 80 (488)
+|++|++.++.......+|..|+||||+|+..|+.+++++|++.+ ..++.+|.+|+||||+|+..| ...+++
T Consensus 24 ~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~tpL~~A~~~~-------~~~~v~ 95 (282)
T 1oy3_D 24 FLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG-AGVLVAERGGHTALHLACRVR-------AHTCAC 95 (282)
T ss_dssp HHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCTTSCCHHHHHTTTT-------CHHHHH
T ss_pred HHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcC-------CcchhH
Confidence 367888877764333357899999999999999999999999985 457899999999999999998 355666
Q ss_pred HHhhhhhhhhhccc-------------------------------cCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHH
Q 011338 81 KWIYSFIYIRSAYA-------------------------------SNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVW 129 (488)
Q Consensus 81 ~li~~~~~v~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~ 129 (488)
.++........... ..............+..|.||||.|+..++.++++
T Consensus 96 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~ 175 (282)
T 1oy3_D 96 VLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR 175 (282)
T ss_dssp HHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred hhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHH
Confidence 66543211100000 00000000112234557889999998877776666
Q ss_pred HHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhh-cCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccC
Q 011338 130 KSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEK-VGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDD 208 (488)
Q Consensus 130 ~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~-~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~ 208 (488)
.|++.+ ...+. ++ ..|+||||+|++.|+.+++++|++.+.+. +.+|.
T Consensus 176 ~Ll~~g----------------------------~~~~~---~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~-~~~d~ 223 (282)
T 1oy3_D 176 LLRDAG----------------------------ADLNK---PEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMY 223 (282)
T ss_dssp HHHHHT----------------------------CCTTC---CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT
T ss_pred HHHHcC----------------------------CCCCC---CCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-ccccc
Confidence 665543 23322 33 34999999999999999999999998875 45699
Q ss_pred CCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCC
Q 011338 209 YNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAP 259 (488)
Q Consensus 209 ~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~ 259 (488)
.|+||||+|+.+|+.+++++|++.|++ ++.+|.+|.|||++|....+
T Consensus 224 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 224 GGRTPLGSALLRPNPILARLLRAHGAP----EPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp TSCCHHHHHHTSSCHHHHHHHHHTTCC----CCCCC---------------
T ss_pred CCCCHHHHHHHcCCcHHHHHHHHcCCC----cCcCCCcccccccccCCccc
Confidence 999999999999999999999999987 79999999999999988754
No 26
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.95 E-value=2e-28 Score=228.80 Aligned_cols=198 Identities=14% Similarity=0.012 Sum_probs=158.0
Q ss_pred cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhC--ccccccccCCCChHHHHHhhCCCCCCCCchhhHH
Q 011338 2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRY--RKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFW 79 (488)
Q Consensus 2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~--~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~ 79 (488)
|++|+++++.... .+|.+|.||||+|+..|+.+++++|++.+ ++.....|..|+||||+|+..| ..+++
T Consensus 18 v~~Ll~~~~~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~-------~~~~~ 88 (228)
T 2dzn_A 18 VQELLHSKPSLLL--QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG-------NLEVV 88 (228)
T ss_dssp HHHHHHHCGGGTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHC-------CHHHH
T ss_pred HHHHHhcCccccc--cCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcC-------CHHHH
Confidence 5778877764332 37899999999999999999999999997 4433338899999999999998 45666
Q ss_pred HHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHH
Q 011338 80 KKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCV 159 (488)
Q Consensus 80 ~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l 159 (488)
+.++.... .......+..|.||+|.|+..++.++++.+++.+
T Consensus 89 ~~Ll~~g~--------------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g------------------------ 130 (228)
T 2dzn_A 89 KSLYDRPL--------------KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG------------------------ 130 (228)
T ss_dssp HHHHSSSS--------------CCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT------------------------
T ss_pred HHHHhCCC--------------CcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcC------------------------
Confidence 76664321 0111224557899999999887776666665543
Q ss_pred hhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHH-hcCCcccc
Q 011338 160 CREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIY-TMGAKKNS 238 (488)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll-~~~~~~~~ 238 (488)
.+.+. +|..|.||||+|+..|+.+++++|++.++...+.+|..|+||||+|+..|+.+++++|+ +.|++
T Consensus 131 ----~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~--- 200 (228)
T 2dzn_A 131 ----ASVRI---KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE--- 200 (228)
T ss_dssp ----CCSCC---CCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC---
T ss_pred ----CCccc---cCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC---
Confidence 23322 56789999999999999999999999995556777999999999999999999999999 77876
Q ss_pred ccccccCCCCcHHHHHHHh
Q 011338 239 VATNWDKAHNNILHQAAFL 257 (488)
Q Consensus 239 ~~~~~D~~G~TpLhlA~~~ 257 (488)
++.+|.+|+||||+|+..
T Consensus 201 -~~~~~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 201 -YDLVDNKGAKAEDVALNE 218 (228)
T ss_dssp -SCCBCTTSCBGGGGCSST
T ss_pred -CCccCCCCCcHHHHHHHH
Confidence 799999999999999764
No 27
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.95 E-value=5e-28 Score=227.59 Aligned_cols=198 Identities=12% Similarity=0.056 Sum_probs=162.6
Q ss_pred CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338 1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK 80 (488)
Q Consensus 1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~ 80 (488)
++++|++++.+.+. .|.+|.||||+|+..|+.+++++|++.+ ..++.+|.+|.||||+|+..| ..++++
T Consensus 26 ~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~-------~~~~~~ 94 (237)
T 3b7b_A 26 ICHMLVQAGANIDT---CSEDQRTPLMEAAENNHLEAVKYLIKAG-ALVDPKDAEGSTCLHLAAKKG-------HYEVVQ 94 (237)
T ss_dssp HHHHHHHTTCCTTC---CCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCCCCCCTTSCCHHHHHHHTT-------CHHHHH
T ss_pred HHHHHHHcCCCcCc---cCCCCCCHHHHHHHhCCHHHHHHHHhCC-CCCCCCCCCCCcHHHHHHHcC-------CHHHHH
Confidence 46788888876554 6889999999999999999999999884 457889999999999999999 456667
Q ss_pred HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHh
Q 011338 81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVC 160 (488)
Q Consensus 81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~ 160 (488)
.++... .......+..|.||+|.|+..++.++++.+++.+
T Consensus 95 ~Ll~~~---------------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g------------------------- 134 (237)
T 3b7b_A 95 YLLSNG---------------QMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG------------------------- 134 (237)
T ss_dssp HHHTTT---------------CCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-------------------------
T ss_pred HHHhCC---------------CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCC-------------------------
Confidence 666432 0111224557889999999887777777666544
Q ss_pred hhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCcccccc
Q 011338 161 REISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVA 240 (488)
Q Consensus 161 ~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~ 240 (488)
...+. ++..|.||||+|+..|+.+++++|++.+++.. .+|..|+||||+|+.+|+.+++++|++.|++ +
T Consensus 135 ---~~~~~---~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad----~ 203 (237)
T 3b7b_A 135 ---SDINI---RDNEENICLHWAAFSGCVDIAEILLAAKCDLH-AVNIHGDSPLHIAARENRYDCVVLFLSRDSD----V 203 (237)
T ss_dssp ---CCTTC---CCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC----T
T ss_pred ---CCCCc---cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHhCCHhHHHHHHHcCCC----C
Confidence 22222 56779999999999999999999999988754 5599999999999999999999999999887 7
Q ss_pred ccccCCCCcHHHHHHHhCCC
Q 011338 241 TNWDKAHNNILHQAAFLAPS 260 (488)
Q Consensus 241 ~~~D~~G~TpLhlA~~~~~~ 260 (488)
+.+|.+|+||||+|+..++.
T Consensus 204 ~~~d~~g~t~l~~A~~~~~~ 223 (237)
T 3b7b_A 204 TLKNKEGETPLQCASLNSQV 223 (237)
T ss_dssp TCCCTTSCCHHHHSCTTCHH
T ss_pred CccCCCCCCHHHHHHHHHHH
Confidence 89999999999999998864
No 28
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.95 E-value=3.9e-28 Score=222.39 Aligned_cols=188 Identities=13% Similarity=0.072 Sum_probs=158.2
Q ss_pred CCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCC
Q 011338 20 TNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNIS 99 (488)
Q Consensus 20 ~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~ 99 (488)
..|.||||.|+..|+.+.++.|++.++..++.+|.+|.||||+|+..| ..++++.++....++
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~-------~~~~v~~Ll~~g~~~---------- 65 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNN-------DIEIAKALIDRGADI---------- 65 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHT-------CHHHHHHHHHTTCCT----------
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC-------CHHHHHHHHHcCCCC----------
Confidence 467899999999999999999999988789999999999999999999 467778777653322
Q ss_pred CCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchH
Q 011338 100 HGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKV 179 (488)
Q Consensus 100 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tp 179 (488)
...+..+.||+|.|+..++.++++.+++.+.. ..+ .++..|.||
T Consensus 66 ------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~---------------------------~~~---~~~~~g~t~ 109 (201)
T 3hra_A 66 ------NLQNSISDSPYLYAGAQGRTEILAYMLKHATP---------------------------DLN---KHNRYGGNA 109 (201)
T ss_dssp ------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC---------------------------CTT---CCCTTSCCS
T ss_pred ------CCCCCCCCCHHHHHHHcCCHHHHHHHHhccCc---------------------------ccc---cccCCCCcH
Confidence 12455788999999998888888777644321 111 156779999
Q ss_pred HHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCC-----hhHHHHHHhcCCccccccccccCCCCcHHHHH
Q 011338 180 VFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQ-----EKIFNLIYTMGAKKNSVATNWDKAHNNILHQA 254 (488)
Q Consensus 180 Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-----~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA 254 (488)
||+|+..|+.+++++|++.++...+.+|..|+||||+|+..++ .+++++|++.|++ ++.+|.+|+||||+|
T Consensus 110 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~A 185 (201)
T 3hra_A 110 LIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD----QSIKDNSGRTAMDYA 185 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCC----TTCCCTTSCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCC----CCccCCCCCCHHHHH
Confidence 9999999999999999999955566779999999999999998 8999999999887 799999999999999
Q ss_pred HHhCCCCCcc
Q 011338 255 AFLAPSSQLD 264 (488)
Q Consensus 255 ~~~~~~~~v~ 264 (488)
+..|+.++++
T Consensus 186 ~~~~~~~~~~ 195 (201)
T 3hra_A 186 NQKGYTEISK 195 (201)
T ss_dssp HHHTCHHHHH
T ss_pred HHcCCHhHHH
Confidence 9999976654
No 29
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.95 E-value=2.1e-28 Score=237.71 Aligned_cols=191 Identities=8% Similarity=0.002 Sum_probs=159.1
Q ss_pred CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338 1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK 80 (488)
Q Consensus 1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~ 80 (488)
+|++|++.+.+.+. +|.+|+||||+|+..|+.+++++|++. +..++.+|.+|+||||+|+..| ..++++
T Consensus 74 ~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t~L~~A~~~~-------~~~~v~ 142 (285)
T 3d9h_A 74 SLRNLISQGWAVNI---ITADHVSPLHEACLGGHLSCVKILLKH-GAQVNGVTADWHTPLFNACVSG-------SWDCVN 142 (285)
T ss_dssp HHHHHHHTTCCSCE---ECTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSSCCCTTCCCHHHHHHHHT-------CHHHHH
T ss_pred HHHHHHHCCCCCCC---cCCCCCCHHHHHHHCCcHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcC-------HHHHHH
Confidence 36788888766544 788999999999999999999999998 4557899999999999999998 466777
Q ss_pred HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHh
Q 011338 81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVC 160 (488)
Q Consensus 81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~ 160 (488)
.++.....+ .....|.||+|.|+..++.++++.+++.+
T Consensus 143 ~Ll~~g~~~-----------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g------------------------- 180 (285)
T 3d9h_A 143 LLLQHGASV-----------------QPESDLASPIHEAARRGHVECVNSLIAYG------------------------- 180 (285)
T ss_dssp HHHHTTCCS-----------------SCSCTTSCHHHHHHHHTCHHHHHHHHHTT-------------------------
T ss_pred HHHHCCCCC-----------------CCCCCCCCHHHHHHHcCCHHHHHHHHHCC-------------------------
Confidence 776543221 12334889999999888877777766544
Q ss_pred hhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCcccccc
Q 011338 161 REISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVA 240 (488)
Q Consensus 161 ~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~ 240 (488)
.+.+. +|..|.||||+|+..|+.+++++|++.+++.. .|..|+||||+|+.+|+.+++++|++.|++ +
T Consensus 181 ---~~~~~---~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad----~ 248 (285)
T 3d9h_A 181 ---GNIDH---KISHLGTPLYLACENQQRACVKKLLESGADVN--QGKGQDSPLHAVVRTASEELACLLMDFGAD----T 248 (285)
T ss_dssp ---CCTTC---CBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT--CCBTTBCHHHHHHHTTCHHHHHHHHHTTCC----T
T ss_pred ---CCCCC---cCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----C
Confidence 22222 57789999999999999999999999988765 388999999999999999999999999886 7
Q ss_pred ccccCCCCcHHHHHHH
Q 011338 241 TNWDKAHNNILHQAAF 256 (488)
Q Consensus 241 ~~~D~~G~TpLhlA~~ 256 (488)
+.+|.+|+||||+|+.
T Consensus 249 ~~~d~~g~t~l~~A~~ 264 (285)
T 3d9h_A 249 QAKNAEGKRPVELVPP 264 (285)
T ss_dssp TCCCTTSCCGGGGSCT
T ss_pred CCcCCCCCCHHHHhcC
Confidence 9999999999999994
No 30
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.95 E-value=6.9e-28 Score=215.36 Aligned_cols=150 Identities=16% Similarity=0.146 Sum_probs=129.1
Q ss_pred hHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCCCC
Q 011338 24 MLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDI 103 (488)
Q Consensus 24 T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~~~ 103 (488)
++|+.||+.|+.++|+.||+.+ .+++.+|.+|+||||+|+..++
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~G-advn~~d~~g~t~l~~a~~~~~----------------------------------- 49 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENG-ADVNASDSDGRTPLHHAAENGH----------------------------------- 49 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTC-----------------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCC-----------------------------------
Confidence 5799999999999999999985 5589999999999999999982
Q ss_pred CCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHHHHH
Q 011338 104 ERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVFIA 183 (488)
Q Consensus 104 ~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~A 183 (488)
.++++.+++.+.+++. +|.+|+||||+|
T Consensus 50 -------------------------------------------------~~~~~~ll~~gad~~~---~d~~g~TpLh~A 77 (169)
T 4gpm_A 50 -------------------------------------------------KEVVKLLISKGADVNA---KDSDGRTPLHHA 77 (169)
T ss_dssp -------------------------------------------------HHHHHHHHHTTCCTTC---CCTTSCCHHHHH
T ss_pred -------------------------------------------------HHHHHHHHhcccchhh---hccCCCCHHHHH
Confidence 1233344444444433 677899999999
Q ss_pred HHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCCCc
Q 011338 184 VKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQL 263 (488)
Q Consensus 184 a~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v 263 (488)
++.|+.+++++|++.+++. +.+|.+|+||||+|+.+|+.+++++|++.|++ ++.+|.+|+||||+|+..|+.+++
T Consensus 78 ~~~g~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad----~~~~d~~G~TpL~~A~~~g~~~iv 152 (169)
T 4gpm_A 78 AENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGAD----VNTSDSDGRTPLDLAREHGNEEVV 152 (169)
T ss_dssp HHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----ccccCCCCCCHHHHHHHcCCHHHH
Confidence 9999999999999999885 45699999999999999999999999999887 799999999999999999998777
Q ss_pred ccc
Q 011338 264 DRV 266 (488)
Q Consensus 264 ~~l 266 (488)
+.|
T Consensus 153 ~~L 155 (169)
T 4gpm_A 153 KLL 155 (169)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 31
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.95 E-value=9.9e-28 Score=232.93 Aligned_cols=187 Identities=9% Similarity=-0.048 Sum_probs=154.2
Q ss_pred CCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccC
Q 011338 17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASN 96 (488)
Q Consensus 17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~ 96 (488)
.+|.+|.||||+|+..|+.+++++|++.+.+ ++.+ +|+||||+|+..| ..++++.++....++
T Consensus 26 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~--~g~t~L~~A~~~g-------~~~~v~~Ll~~ga~~------- 88 (285)
T 3kea_A 26 KADVHGHSASYYAIADNNVRLVCTLLNAGAL-KNLL--ENEFPLHQAATLE-------DTKIVKILLFSGLDD------- 88 (285)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG-GSCC--TTCCHHHHHTTSS-------SCHHHHHHHHTTCCT-------
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCC--CCCCHHHHHHHcC-------CHHHHHHHHHCCCCC-------
Confidence 4789999999999999999999999999544 5655 5999999999999 466778777654322
Q ss_pred CCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCc
Q 011338 97 NISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGI 176 (488)
Q Consensus 97 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g 176 (488)
...+..|.||||.|+..++.++++.+++.+ .+.+. ++..|
T Consensus 89 ---------~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g----------------------------a~~~~---~~~~g 128 (285)
T 3kea_A 89 ---------SQFDDKGNTALYYAVDSGNMQTVKLFVKKN----------------------------WRLMF---YGKTG 128 (285)
T ss_dssp ---------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHC----------------------------GGGGG---CSSSG
T ss_pred ---------CCcCCCCCcHHHHHHHcCCHHHHHHHHhcC----------------------------CCCCc---cCCCC
Confidence 124557899999999888887777776654 22221 56667
Q ss_pred -chHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcH-HHHH
Q 011338 177 -KKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNI-LHQA 254 (488)
Q Consensus 177 -~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~Tp-LhlA 254 (488)
.||||+|+..|+.+++++|++.+++... ...|+||||+|+.+|+.+++++|++.|++ ++.+|.+|+|| ||+|
T Consensus 129 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~gad----~n~~~~~g~t~~L~~A 202 (285)
T 3kea_A 129 WKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDMMILLLDYMTS----TNTNNSLLFIPDIKLA 202 (285)
T ss_dssp GGSHHHHHHHTTCHHHHHHHHTTSCTTCC--CSTHHHHHHHHHHTTCHHHHHHHHHHHHH----TCTTCCCBCCTTHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCcccc--ccCCccHHHHHHHcChHHHHHHHHHcCCC----CCcccCCCCChHHHHH
Confidence 7999999999999999999999887522 22899999999999999999999999876 79999999998 9999
Q ss_pred HHhCCCCCcccc
Q 011338 255 AFLAPSSQLDRV 266 (488)
Q Consensus 255 ~~~~~~~~v~~l 266 (488)
+..|+.++++.+
T Consensus 203 ~~~~~~~~v~~L 214 (285)
T 3kea_A 203 IDNKDIEMLQAL 214 (285)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHcCCHHHHHHH
Confidence 999998888765
No 32
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.94 E-value=1.2e-27 Score=230.44 Aligned_cols=183 Identities=10% Similarity=0.052 Sum_probs=127.0
Q ss_pred CCCCCchhHHHHHHHcCCcc-HHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhcccc
Q 011338 17 DKGTNGAMLLTSCIIDDIFD-IPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYAS 95 (488)
Q Consensus 17 ~~d~~G~T~LH~A~~~g~~d-iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~ 95 (488)
..|..|.||||.|+..++.+ ++++|++. +.+++.+|.+|+||||+||..|+ .++++.|+....++
T Consensus 47 ~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~-Gadvn~~d~~G~TpLh~A~~~g~-------~~~v~~Ll~~~a~~------ 112 (269)
T 4b93_B 47 AADPEFCHPLCQCPKCAPAQKRLAKVPAS-GLGVNVTSQDGSSPLHVAALHGR-------ADLIPLLLKHGANA------ 112 (269)
T ss_dssp ----------------------------C-CCCTTCCCTTSCCHHHHHHHTTC-------TTHHHHHHHTTCCT------
T ss_pred ccCccCCCHHHHHHHhCCHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCc-------HHHHHHHHhcCCCc------
Confidence 36788999999999988765 77788877 55689999999999999999994 55777776543322
Q ss_pred CCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcC
Q 011338 96 NNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVG 175 (488)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~ 175 (488)
......|.||+|.++..++.++++.+++.+ .+.+. +|..
T Consensus 113 ----------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g----------------------------~~~n~---~d~~ 151 (269)
T 4b93_B 113 ----------GARNADQAVPLHLACQQGHFQVVKCLLDSN----------------------------AKPNK---KDLS 151 (269)
T ss_dssp ----------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTT----------------------------CCSCC---CCTT
T ss_pred ----------CccCCCCCCccccccccChHHHHHHHHHCC----------------------------CCCCC---CCCC
Confidence 123557889999998777666666555433 33333 6778
Q ss_pred cchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHH
Q 011338 176 IKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAA 255 (488)
Q Consensus 176 g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~ 255 (488)
|+||||+||+.|+.+++++|++.+++. +.+|..|+||||+|+.+|+.+++++|++.|++ ++.+|.+|+||||+|+
T Consensus 152 g~TpL~~A~~~g~~~~v~~Ll~~gadv-n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad----~~~~d~~G~TpL~~A~ 226 (269)
T 4b93_B 152 GNTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVVELLLLHGAS----VQVLNKRQRTAVDCAE 226 (269)
T ss_dssp CCCHHHHHHHTTCGGGHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC----SCCCCTTSCCSGGGSC
T ss_pred CCCHHHHHHHCCCHHHHHHHHHCCCCC-CccccCCCcHHHHHHHcCCHHHHHHHHHCCCC----CCCcCCCCCCHHHHHH
Confidence 999999999999999999999998875 45699999999999999999999999999987 7999999999999998
Q ss_pred HhCC
Q 011338 256 FLAP 259 (488)
Q Consensus 256 ~~~~ 259 (488)
++++
T Consensus 227 ~~~~ 230 (269)
T 4b93_B 227 QNSK 230 (269)
T ss_dssp TTCH
T ss_pred hCCc
Confidence 7654
No 33
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.94 E-value=2.1e-27 Score=226.42 Aligned_cols=214 Identities=9% Similarity=-0.060 Sum_probs=154.9
Q ss_pred CchhHHHHHHHcCCccHH----HHHHHhCcccccc----ccCCCChHHHHHhhC---CCCCCCCchhhHHHHHhhhhhhh
Q 011338 21 NGAMLLTSCIIDDIFDIP----LDLLQRYRKLAYA----QDNDGDTAIDMLAQK---PSAFPSGTQLAFWKKWIYSFIYI 89 (488)
Q Consensus 21 ~G~T~LH~A~~~g~~div----~~LL~~~~~~~~~----~d~~G~TpLh~Aa~~---g~~~~s~~~l~~~~~li~~~~~v 89 (488)
.|+||||.||..|+.+.+ ++|++.+ ..++. +|.+|+||||+||.. | ..++++.|+......
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g-~~i~~~~~~~d~~g~t~L~~A~~~~~~g-------~~~~v~~Ll~~g~~~ 72 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNS-KYLTDSAYTEGSTGKTCLMKAVLNLQDG-------VNACIMPLLQIDKDS 72 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHT-CCTTSGGGSBTTTTBCHHHHHHHTCBTT-------BCTTHHHHHHHHHHT
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcC-CCcccccccCCCCCCCHHHHHHHccccc-------hHHHHHHHHhcCCcc
Confidence 389999999999999854 5555564 45676 899999999999998 7 456788888776554
Q ss_pred hhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCch
Q 011338 90 RSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGES 169 (488)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~ 169 (488)
.... ...+....+.+..|.||||.|+..++.++++.|++.+... +..+.... . ..+ .
T Consensus 73 ~~~~-----~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~------------~----~~~-~ 129 (256)
T 2etb_A 73 GNPK-----PLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRF------------F----QKH-Q 129 (256)
T ss_dssp TCSS-----CGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGG------------G----SCC-S
T ss_pred cchh-----hhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-Cccccccc------------c----ccc-c
Confidence 3211 0111112223457999999999999998888888765321 00000000 0 000 0
Q ss_pred hhhhcCcchHHHHHHHcCcHHHHHHHHH---hCCCceeeccCCCccHHHHHHh--cCChh-------HHHHHHhcCCccc
Q 011338 170 QFEKVGIKKVVFIAVKHGIVEFITEIMK---HYPDIIWCYDDYNRHIFSYATL--QRQEK-------IFNLIYTMGAKKN 237 (488)
Q Consensus 170 ~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~--~~~~~-------iv~~Ll~~~~~~~ 237 (488)
...+..|.||||+|+..|+.+++++|++ .+.+. +.+|.+|+||||+|+. +++.+ ++++|++.|++..
T Consensus 130 ~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~ 208 (256)
T 2etb_A 130 GTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL-EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLC 208 (256)
T ss_dssp SSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc-CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcc
Confidence 0123349999999999999999999999 77664 4669999999999999 88888 9999999987621
Q ss_pred ---cccccccCCCCcHHHHHHHhCCCCCcccc
Q 011338 238 ---SVATNWDKAHNNILHQAAFLAPSSQLDRV 266 (488)
Q Consensus 238 ---~~~~~~D~~G~TpLhlA~~~~~~~~v~~l 266 (488)
.+.+.+|.+|+||||+|+..|+.++++.|
T Consensus 209 ~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L 240 (256)
T 2etb_A 209 PTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240 (256)
T ss_dssp TTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cccccccccCCCCCCHHHHHHHhCCHHHHHHH
Confidence 01189999999999999999998777544
No 34
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.94 E-value=1.4e-27 Score=237.08 Aligned_cols=243 Identities=13% Similarity=0.046 Sum_probs=162.0
Q ss_pred CCCCchhHHHHHHHcCCccHHHHHHHhCccccccccC-CCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccC
Q 011338 18 KGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDN-DGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASN 96 (488)
Q Consensus 18 ~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~-~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~ 96 (488)
.+.+|+|+||.||++|+.|+|++||+.+. +++.+|. .|+||||+||..| +.++++.|+.....+.
T Consensus 21 ~~~~~~t~L~~Av~~g~~~~V~~LL~~Ga-dvn~~~~~~g~TpLh~A~~~g-------~~~iv~~Ll~~ga~~~------ 86 (337)
T 4g8k_A 21 AAVEDNHLLIKAVQNEDVDLVQQLLEGGA-NVNFQEEEGGWTPLHNAVQMS-------REDIVELLLRHGADPV------ 86 (337)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTC-CTTCCCTTTCCCHHHHHHHTT-------CHHHHHHHHHTTCCTT------
T ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHCCC-CCCccCCCCCcCHHHHHHHcC-------CHHHHHHHHHcCCchh------
Confidence 34568999999999999999999999954 5777765 5999999999999 4678888876544321
Q ss_pred CCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHH--Hhh----HhHHHHHHHHhhhhcccCc--
Q 011338 97 NISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVK--LAH----VQTQELLSCVCREISTQGE-- 168 (488)
Q Consensus 97 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~--~~h----~~~~~il~~l~~~~~~~~~-- 168 (488)
..+..+.++++.+...+.......++..+.. ++..+..+ ..| .+..++++.+++.+...+.
T Consensus 87 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~ 155 (337)
T 4g8k_A 87 ----------LRKKNGATPFILAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR 155 (337)
T ss_dssp ----------CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred ----------hhccCCCchhHHHHhcccchhhHHhhhccch-hhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhh
Confidence 1223344455555555555554444443311 00000000 001 1223444444444333221
Q ss_pred -----hhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCC----hhHHHHHHhcCCccccc
Q 011338 169 -----SQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQ----EKIFNLIYTMGAKKNSV 239 (488)
Q Consensus 169 -----~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~----~~iv~~Ll~~~~~~~~~ 239 (488)
....+..|.||||+|++.|+.+++++|+++.+...+.+|..|+|+||.++..++ ..++++|++.|++
T Consensus 156 ~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad---- 231 (337)
T 4g8k_A 156 KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD---- 231 (337)
T ss_dssp CCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC----
T ss_pred ccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC----
Confidence 112356789999999999999999999976444455678999999998876654 3578889998876
Q ss_pred cccccCCCCcHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhc--cchhHHHhhcCCCCchhhhhHH
Q 011338 240 ATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIV--QPKYKEMVNLHYKTPRALFSDQ 309 (488)
Q Consensus 240 ~~~~D~~G~TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~--~~~~~~~~n~~G~tp~~l~~~~ 309 (488)
+|.+|.+|+||||+|+..|+.++++ .++ ...+.+.+|++|+||++++.+.
T Consensus 232 ~n~~d~~g~t~L~~a~~~~~~~~v~--------------------~Ll~~~~~~vn~~d~~G~TpL~~A~~~ 283 (337)
T 4g8k_A 232 VNVRGERGKTPLILAVEKKHLGLVQ--------------------RLLEQEHIEINDTDSDGKTALLLAVEL 283 (337)
T ss_dssp TTCCCGGGCCHHHHHHHTTCHHHHH--------------------HHHTSTTCCTTCBCTTSCBHHHHHHHT
T ss_pred CCCcCCCCCCHHHHHHHhhhhHHHH--------------------HHHHhcCCcccCcCCCCCCHHHHHHHc
Confidence 7899999999999999998855442 222 2345677889999999987653
No 35
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.94 E-value=8.2e-28 Score=242.58 Aligned_cols=248 Identities=12% Similarity=0.038 Sum_probs=175.7
Q ss_pred CCCCCchhHHHHHHHcCCccHHHHHHHhCcccccccc-CCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhcccc
Q 011338 17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQD-NDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYAS 95 (488)
Q Consensus 17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d-~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~ 95 (488)
.+|..|.||||+|+..| .+++++|+.. .++.+| .+|+||||+||..|+.. .++.++...... .++
T Consensus 89 ~~~~~g~t~L~~Aa~~~-~~~~~~L~~~---~~n~~d~~~g~t~Lh~Aa~~g~~~-------~v~~Ll~~~~~~---ll~ 154 (373)
T 2fo1_E 89 EPEPESPIKLHTEAAGS-YAITEPITRE---SVNIIDPRHNRTVLHWIASNSSAE-------KSEDLIVHEAKE---CIA 154 (373)
T ss_dssp -----CCCHHHHHHHSS-SCCCSCCSTT---TTTTCCCSSCCCHHHHHHCTTCCS-------CCTTHHHHHHHH---HHH
T ss_pred CCCCCCccHHHHHhcCC-chHHHHhccc---cccccCCcCCCCHHHHHHHCCCHH-------HHHHHHHHHHHH---HHh
Confidence 46889999999999955 5888888653 467777 78999999999999543 233333211100 000
Q ss_pred CCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchh-hhhHHHHHHhh----HhHHHHHHHHhhhh---cccC
Q 011338 96 NNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPA-IKHIYEVKLAH----VQTQELLSCVCREI---STQG 167 (488)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~h----~~~~~il~~l~~~~---~~~~ 167 (488)
. . .+....+..|.||||.|+..++.++++.|++.+... ..........| .+..++++.|++.+ ...+
T Consensus 155 ~-g----a~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 229 (373)
T 2fo1_E 155 A-G----ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE 229 (373)
T ss_dssp T-C----CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTS
T ss_pred c-C----CCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChh
Confidence 0 0 011124567899999999999999999999986421 11111111112 23457778887765 3333
Q ss_pred chhhhhcCcchHHHHHHHcC---cHHHHHHHHHhCCCcee-------eccCCCccHHHHHHhcCChhHHHHHHhcC-Ccc
Q 011338 168 ESQFEKVGIKKVVFIAVKHG---IVEFITEIMKHYPDIIW-------CYDDYNRHIFSYATLQRQEKIFNLIYTMG-AKK 236 (488)
Q Consensus 168 ~~~~~~~~g~tpLh~Aa~~G---~~~~v~~Ll~~~~~~~~-------~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~-~~~ 236 (488)
. .|..|.||||+|+..| +.+++++|++.+++... ..|..|+||||+|+.+|+.+++++|++.+ .+
T Consensus 230 ~---~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~- 305 (373)
T 2fo1_E 230 E---LDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN- 305 (373)
T ss_dssp C---CCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC-
T ss_pred h---cCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC-
Confidence 2 5788999999999998 99999999999887543 24779999999999999999999999875 44
Q ss_pred ccccccccCCCCcHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhHH
Q 011338 237 NSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQ 309 (488)
Q Consensus 237 ~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~~ 309 (488)
++.+|.+|+||||+|+..|+.++++.|. + ...+.+.+|.+|+||++++.+.
T Consensus 306 ---~n~~d~~g~TpL~~A~~~g~~~iv~~Ll----------------~---~gad~~~~d~~g~t~l~~A~~~ 356 (373)
T 2fo1_E 306 ---KDKQDEDGKTPIMLAAQEGRIEVVMYLI----------------Q---QGASVEAVDATDHTARQLAQAN 356 (373)
T ss_dssp ---TTCCCTTCCCHHHHHHHHTCHHHHHHHH----------------H---TTCCSSCCCSSSCCHHHHHHHT
T ss_pred ---ccCcCCCCCCHHHHHHHcCCHHHHHHHH----------------H---cCCCccCCCCCCCCHHHHHHHc
Confidence 7999999999999999999976654321 0 2234567899999999998764
No 36
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.94 E-value=9.3e-27 Score=231.32 Aligned_cols=221 Identities=13% Similarity=0.062 Sum_probs=168.1
Q ss_pred CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338 1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK 80 (488)
Q Consensus 1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~ 80 (488)
+|++|++++.+.+. +|.+|.||||+|+..|+.+++++|++.+ ..++.+|.+|.||||+|+..| ..++++
T Consensus 73 ~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~g~~~iv~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~-------~~~~v~ 141 (351)
T 3utm_A 73 IVQLLLQHGADVHA---KDKGGLVPLHNACSYGHYEVTELLLKHG-ACVNAMDLWQFTPLHEAASKN-------RVEVCS 141 (351)
T ss_dssp HHHHHHHTTCCTTC---CCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTT-------CHHHHH
T ss_pred HHHHHHHcCCCCCc---cCCCCCcHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcC-------CHHHHH
Confidence 47889998876554 7889999999999999999999999985 457889999999999999999 467777
Q ss_pred HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHH---------------------HHHhhccchh-
Q 011338 81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMV---------------------WKSLNLFVPA- 138 (488)
Q Consensus 81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~---------------------~~ll~~~~~~- 138 (488)
.++....+.. ..+..+.++++.+...+..+.. ..++......
T Consensus 142 ~Ll~~g~~~~----------------~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 205 (351)
T 3utm_A 142 LLLSHGADPT----------------LVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINF 205 (351)
T ss_dssp HHHHTTCCTT----------------CCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTC
T ss_pred HHHHcCCCCc----------------cccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccc
Confidence 7776543221 1234556666665544444333 3333222110
Q ss_pred -------hhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCc
Q 011338 139 -------IKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNR 211 (488)
Q Consensus 139 -------~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~ 211 (488)
.....+....|....++++.|++.+.+.+. +|.+|+||||+|++.|+.+++++|++.+.+. +.+|..|+
T Consensus 206 ~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~ 281 (351)
T 3utm_A 206 KQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNE---KNKDFMTPLHVAAERAHNDVMEVLHKHGAKM-NALDSLGQ 281 (351)
T ss_dssp CCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTC---CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSC
T ss_pred cCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCC---cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCC
Confidence 111122222233557888888888776654 6788999999999999999999999998875 45699999
Q ss_pred cHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHH
Q 011338 212 HIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAF 256 (488)
Q Consensus 212 t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~ 256 (488)
||||+|+.+|+.+++++|++.|++ ++.+|.+|+||||+|..
T Consensus 282 t~L~~A~~~~~~~~v~~Ll~~gad----~~~~~~~g~tal~~a~~ 322 (351)
T 3utm_A 282 TALHRAALAGHLQTCRLLLSYGSD----PSIISLQGFTAAQMGNE 322 (351)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHSCH
T ss_pred CHHHHHHHcCcHHHHHHHHHcCCC----CCCcCCCCCChhhhhhH
Confidence 999999999999999999999987 78999999999999843
No 37
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.94 E-value=9.6e-27 Score=211.98 Aligned_cols=156 Identities=11% Similarity=0.069 Sum_probs=133.8
Q ss_pred CCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccC
Q 011338 17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASN 96 (488)
Q Consensus 17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~ 96 (488)
.+|.+|+||||+|+..|+.+++++|++.+ ..++.+|.+|+||||+|+..|+
T Consensus 30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~~~---------------------------- 80 (192)
T 2rfm_A 30 YRDSYNRTPLMVACMLGMENAIDKLVENF-DKLEDKDIEGSTALIWAVKNNR---------------------------- 80 (192)
T ss_dssp CCCTTCCCHHHHHHHHTCGGGHHHHHHHH-CCTTCCCTTSCCHHHHHHHTTC----------------------------
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHhc-cccccccccCccHHHHHHHcCC----------------------------
Confidence 47899999999999999999999999984 4578899999999999999982
Q ss_pred CCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCc
Q 011338 97 NISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGI 176 (488)
Q Consensus 97 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g 176 (488)
.++++.|++.+...+. +|..|
T Consensus 81 --------------------------------------------------------~~~v~~Ll~~g~~~~~---~~~~g 101 (192)
T 2rfm_A 81 --------------------------------------------------------LGIAEKLLSKGSNVNT---KDFSG 101 (192)
T ss_dssp --------------------------------------------------------HHHHHHHHHHTCCTTC---CCTTS
T ss_pred --------------------------------------------------------HHHHHHHHHCCCCCCC---CCCCC
Confidence 1344444444444333 57789
Q ss_pred chHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHH
Q 011338 177 KKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAF 256 (488)
Q Consensus 177 ~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~ 256 (488)
.||||+|+..|+.+++++|++.+++. +.+|..|+||||+|+..|+.+++++|++.|++ ++.+|.+|+||||+|+.
T Consensus 102 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~A~~ 176 (192)
T 2rfm_A 102 KTPLMWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGAD----ISARDLTGLTAEASARI 176 (192)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----TTCBCTTSCBHHHHHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCcCCCCCCHHHHHHH
Confidence 99999999999999999999998875 45699999999999999999999999999876 78999999999999999
Q ss_pred hCCCCCccc
Q 011338 257 LAPSSQLDR 265 (488)
Q Consensus 257 ~~~~~~v~~ 265 (488)
.|+.++++.
T Consensus 177 ~~~~~~v~~ 185 (192)
T 2rfm_A 177 FGRQEVIKI 185 (192)
T ss_dssp TTCHHHHHH
T ss_pred hCcHHHHHH
Confidence 999776543
No 38
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.94 E-value=9.9e-27 Score=223.98 Aligned_cols=220 Identities=10% Similarity=-0.034 Sum_probs=156.1
Q ss_pred CCCCCchhHHHHHHHcCCccHHHHHHHhC---ccccc----cccCCCChHHHHHhhC---CCCCCCCchhhHHHHHhhhh
Q 011338 17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRY---RKLAY----AQDNDGDTAIDMLAQK---PSAFPSGTQLAFWKKWIYSF 86 (488)
Q Consensus 17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~---~~~~~----~~d~~G~TpLh~Aa~~---g~~~~s~~~l~~~~~li~~~ 86 (488)
..|.+|+||||.||..|+.++++.|++.. +..++ .+|.+|+||||+||.. | ..++++.|+...
T Consensus 8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g-------~~~~v~~Ll~~g 80 (273)
T 2pnn_A 8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNG-------QNDTIALLLDVA 80 (273)
T ss_dssp ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTT-------BCHHHHHHHHHH
T ss_pred CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcC-------ChHHHHHHHHhh
Confidence 47899999999999999999999999852 22222 4588999999999976 6 467888888765
Q ss_pred hhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhccc
Q 011338 87 IYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQ 166 (488)
Q Consensus 87 ~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~ 166 (488)
.....+.. ..+......+..|.||||.|+..++.++++.|++.+... +..+..+ ... .
T Consensus 81 a~~~~~~~-----~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~------------~~~----~ 138 (273)
T 2pnn_A 81 RKTDSLKQ-----FVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGD------------FFK----K 138 (273)
T ss_dssp HHTTCHHH-----HHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSG------------GGS----S
T ss_pred ccccchhH-----HhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-Ccccccc------------ccc----c
Confidence 54221100 001111123457899999999999999998888776321 0000000 000 0
Q ss_pred CchhhhhcCcchHHHHHHHcCcHHHHHHHHH---hCCCceeeccCCCccHHHHHHhcCC---------hhHHHHHHhcCC
Q 011338 167 GESQFEKVGIKKVVFIAVKHGIVEFITEIMK---HYPDIIWCYDDYNRHIFSYATLQRQ---------EKIFNLIYTMGA 234 (488)
Q Consensus 167 ~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~iv~~Ll~~~~ 234 (488)
......+..|.||||+|+..|+.+++++|++ .+.+. +.+|.+|+||||+|+..|+ .+++++|++.|+
T Consensus 139 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga 217 (273)
T 2pnn_A 139 TKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA 217 (273)
T ss_dssp CSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhh
Confidence 0011134579999999999999999999999 66664 5669999999999999998 799999999986
Q ss_pred ccc---cccccccCCCCcHHHHHHHhCCCCCcccc
Q 011338 235 KKN---SVATNWDKAHNNILHQAAFLAPSSQLDRV 266 (488)
Q Consensus 235 ~~~---~~~~~~D~~G~TpLhlA~~~~~~~~v~~l 266 (488)
+.. ..++.+|.+|+||||+|+..|+.++++.|
T Consensus 218 ~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~L 252 (273)
T 2pnn_A 218 KLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYI 252 (273)
T ss_dssp HHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred hcccccccccccCCCCCCHHHHHHHhChHHHHHHH
Confidence 521 01246999999999999999997766443
No 39
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.94 E-value=1.3e-26 Score=217.47 Aligned_cols=218 Identities=10% Similarity=0.022 Sum_probs=171.0
Q ss_pred CCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCC
Q 011338 18 KGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNN 97 (488)
Q Consensus 18 ~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~ 97 (488)
.|..|.||||.|+..|+.+++++|++.+ ..++.+|.+|.||||+|+..| +.++++.++.....+.
T Consensus 5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~-------~~~~v~~Ll~~~~~~~------- 69 (240)
T 3eu9_A 5 IDDYSTWDIVKATQYGIYERCRELVEAG-YDVRQPDKENVTLLHWAAINN-------RIDLVKYYISKGAIVD------- 69 (240)
T ss_dssp CSCGGGCCHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTT-------CHHHHHHHHHTTCCTT-------
T ss_pred cccccchHHHHHHHcCChHHHHHHHHcC-CCcCCCCCCCCCHHHHHHHhC-------CHHHHHHHHHcCCcch-------
Confidence 5788999999999999999999999985 457889999999999999999 4667777775433221
Q ss_pred CCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchh-hhhHHHHHHhh----HhHHHHHHHHhhhhcccCchhhh
Q 011338 98 ISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPA-IKHIYEVKLAH----VQTQELLSCVCREISTQGESQFE 172 (488)
Q Consensus 98 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~h----~~~~~il~~l~~~~~~~~~~~~~ 172 (488)
......+.||+|.|+..++.++++.+++.+... ..........| .+..++++.|++.+...+. +
T Consensus 70 --------~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~---~ 138 (240)
T 3eu9_A 70 --------QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM---M 138 (240)
T ss_dssp --------CCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC---C
T ss_pred --------hhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccc---c
Confidence 112345789999999999999999999876321 11111111112 2345788888887666544 6
Q ss_pred hcCcchHHHHHHHcCc-HHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHH
Q 011338 173 KVGIKKVVFIAVKHGI-VEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNIL 251 (488)
Q Consensus 173 ~~~g~tpLh~Aa~~G~-~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpL 251 (488)
+..|.||||+|+..|+ .++++.|++.+++.....+..|+||||+|+.+|+.+++++|++.|++ ++.+|.+|+|||
T Consensus 139 ~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~l 214 (240)
T 3eu9_A 139 DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN----VDAQNIKGESAL 214 (240)
T ss_dssp CTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC----TTCBCTTSCBHH
T ss_pred CCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCCCHH
Confidence 7789999999997776 89999999998886554334899999999999999999999999876 789999999999
Q ss_pred HHHHHhCCCCCccc
Q 011338 252 HQAAFLAPSSQLDR 265 (488)
Q Consensus 252 hlA~~~~~~~~v~~ 265 (488)
|+|++.|+.++++.
T Consensus 215 ~~A~~~~~~~~v~~ 228 (240)
T 3eu9_A 215 DLAKQRKNVWMINH 228 (240)
T ss_dssp HHHHHTTCHHHHHH
T ss_pred HHHHHcCcHHHHHH
Confidence 99999999776643
No 40
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.93 E-value=1.7e-26 Score=206.45 Aligned_cols=152 Identities=14% Similarity=0.061 Sum_probs=130.1
Q ss_pred chhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCC
Q 011338 22 GAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHG 101 (488)
Q Consensus 22 G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~ 101 (488)
+.||||.|+..|+.++++.|++.++..++.+|.+|+||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~--------------------------------- 48 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGE--------------------------------- 48 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTC---------------------------------
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCC---------------------------------
Confidence 46899999999999999999999988889999999999999999982
Q ss_pred CCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHHH
Q 011338 102 DIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVF 181 (488)
Q Consensus 102 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh 181 (488)
.++++.|++.+.+.+. ++..|.||||
T Consensus 49 ---------------------------------------------------~~~v~~Ll~~g~~~~~---~~~~g~t~L~ 74 (172)
T 3v30_A 49 ---------------------------------------------------IETVRFLLEWGADPHI---LAKERESALS 74 (172)
T ss_dssp ---------------------------------------------------HHHHHHHHHHTCCTTC---CCTTCCCHHH
T ss_pred ---------------------------------------------------HHHHHHHHHcCCCchh---hcccCCCHHH
Confidence 2344444444444333 5677999999
Q ss_pred HHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCC
Q 011338 182 IAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSS 261 (488)
Q Consensus 182 ~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~ 261 (488)
+|+..|+.+++++|++.+++. +.+|..|+||||+|+.+|+.+++++|++.|++ ++.+|.+|+||||+|+..|+.+
T Consensus 75 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~A~~~~~~~ 149 (172)
T 3v30_A 75 LASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGAD----LTTEADSGYTPMDLAVALGYRK 149 (172)
T ss_dssp HHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHHTCHH
T ss_pred HHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----ccccCCCCCCHHHHHHHhCcHH
Confidence 999999999999999998875 45699999999999999999999999999876 7899999999999999999876
Q ss_pred Cccc
Q 011338 262 QLDR 265 (488)
Q Consensus 262 ~v~~ 265 (488)
+++.
T Consensus 150 ~~~~ 153 (172)
T 3v30_A 150 VQQV 153 (172)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 41
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.93 E-value=3.6e-27 Score=225.81 Aligned_cols=226 Identities=8% Similarity=-0.075 Sum_probs=175.6
Q ss_pred CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338 1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK 80 (488)
Q Consensus 1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~ 80 (488)
+|++|++++.+.+. +|.+|.||||+|+..|+.+++++|++.+ ..++.+|.+|+||||+|+..| ..++++
T Consensus 18 ~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~-------~~~~v~ 86 (261)
T 2xai_A 18 SLRNLISQGWAVNI---ITADHVSPLHEACLGGHLSCVKILLKHG-AQVNGVTADWHTPLFNACVSG-------SWDCVN 86 (261)
T ss_dssp HHHHHHHTTCCSSC---CCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHT-------CHHHHH
T ss_pred HHHHHHHCCCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcC-------CHHHHH
Confidence 36788888776544 7889999999999999999999999985 568899999999999999999 466777
Q ss_pred HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchh-hhhHHHHHHhh----HhHHHH
Q 011338 81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPA-IKHIYEVKLAH----VQTQEL 155 (488)
Q Consensus 81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~h----~~~~~i 155 (488)
.++....++ .....+.||+|.|+..++.++++.+++.+... ..........| .+..++
T Consensus 87 ~Ll~~g~~~-----------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 149 (261)
T 2xai_A 87 LLLQHGASV-----------------QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRAC 149 (261)
T ss_dssp HHHHTTCCS-----------------SCSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHH
T ss_pred HHHHCCCCC-----------------CCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHH
Confidence 777543321 12345889999999999999999999887421 11111111112 234678
Q ss_pred HHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCc
Q 011338 156 LSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAK 235 (488)
Q Consensus 156 l~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~ 235 (488)
++.|++.+.+.+ .+..|.||||+|+..|+.+++++|++.+.+. +.+|.+|+||||+|+.++ +++++|++.+..
T Consensus 150 v~~Ll~~g~~~~----~~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~ 222 (261)
T 2xai_A 150 VKKLLESGADVN----QGKGQDSPLHAVARTASEELACLLMDFGADT-QAKNAEGKRPVELVPPES--PLAQLFLEREGP 222 (261)
T ss_dssp HHHHHHHTCCTT----CCBTTBCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGSCTTC--THHHHHHHC-CC
T ss_pred HHHHHHcCCCCC----CCCCCCChHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCChhhhccccc--cHHHHHHhccCC
Confidence 888888877665 3678999999999999999999999998875 466999999999999655 589999998643
Q ss_pred cc----cccccccCCCCcHHHHHHHhCCCC
Q 011338 236 KN----SVATNWDKAHNNILHQAAFLAPSS 261 (488)
Q Consensus 236 ~~----~~~~~~D~~G~TpLhlA~~~~~~~ 261 (488)
.. ..++.+|..|+||||+|++...++
T Consensus 223 ~~l~~~~~~~~r~~~g~t~l~~~~~~~~p~ 252 (261)
T 2xai_A 223 PSLMQLCRLRIRKCFGIQQHHKITKLVLPE 252 (261)
T ss_dssp CCHHHHHHHHHHTTSCTTCGGGGGGSSSCH
T ss_pred ccHHHHHHHHHHHHhchhccccCcccCCcH
Confidence 21 235678999999999999876554
No 42
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.93 E-value=1.9e-26 Score=228.33 Aligned_cols=210 Identities=10% Similarity=0.013 Sum_probs=144.2
Q ss_pred cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338 2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK 81 (488)
Q Consensus 2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~ 81 (488)
+++|...+.+.+. .+|.+|+||||+|+..|+.++|++||+.+ .+++.+|.+|+||||+|+..|+.. ..+.++.
T Consensus 113 ~~~l~~~g~dvn~--~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~G-ad~n~~d~~g~TpLh~A~~~g~~~----~~~~~~~ 185 (327)
T 1sw6_A 113 NDAFPNTQLNLNI--PVDEHGNTPLHWLTSIANLELVKHLVKHG-SNRLYGDNMGESCLVKAVKSVNNY----DSGTFEA 185 (327)
T ss_dssp HHHCTTSCCCSCS--CCSTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTBCCTTCCCHHHHHHHSSHHH----HTTCHHH
T ss_pred HHHHHhcCCCccc--ccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHhcccc----cHHHHHH
Confidence 3556666554443 26899999999999999999999999995 568899999999999999998300 0233455
Q ss_pred Hhhhhhh-hhhccccCCCCCCCCCCCCCCCchhhhhHHHHH----HHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHH
Q 011338 82 WIYSFIY-IRSAYASNNISHGDIERPHQGPAEHKNFFTRAM----TKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELL 156 (488)
Q Consensus 82 li~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~----~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il 156 (488)
++..... +. ..+..|.||||.|+. .++.++++.+++.+........ .. .+.
T Consensus 186 ll~~~~~~~~----------------~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~---~~-----~i~ 241 (327)
T 1sw6_A 186 LLDYLYPCLI----------------LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ---NR-----PIQ 241 (327)
T ss_dssp HHHHHGGGGG----------------EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGG---GC-----CEE
T ss_pred HHHhhhcccc----------------CCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhccc---ch-----HHH
Confidence 5543321 11 135678999999998 7788888888776522111000 00 000
Q ss_pred HHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCcc
Q 011338 157 SCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKK 236 (488)
Q Consensus 157 ~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~ 236 (488)
..+...+.+.+ .++..|.||||.|+. +++|++.+ .+.+|.+|+||||+|+++|+.+++++|++.|++
T Consensus 242 ~~~~~~g~~~~---~~~~~g~t~L~~a~~------~~~Ll~~~---~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad- 308 (327)
T 1sw6_A 242 SGTNEKESKPN---DKNGERKDSILENLD------LKWIIANM---LNAQDSNGDTCLNIAARLGNISIVDALLDYGAD- 308 (327)
T ss_dssp EC-------------------CHHHHHCS------HHHHHHHT---TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC-
T ss_pred hhhhcccCCcc---cccccCCChhHHHHH------HHHHHHhC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-
Confidence 00011122222 267889999999996 89999984 345699999999999999999999999999987
Q ss_pred ccccccccCCCCcHHHHHHHhC
Q 011338 237 NSVATNWDKAHNNILHQAAFLA 258 (488)
Q Consensus 237 ~~~~~~~D~~G~TpLhlA~~~~ 258 (488)
++.+|.+|+||||+|++.|
T Consensus 309 ---~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 309 ---PFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp ---TTCCCTTSCCGGGGTCC--
T ss_pred ---CcccCCCCCCHHHHHHhcC
Confidence 7999999999999998764
No 43
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.93 E-value=2.8e-27 Score=222.29 Aligned_cols=176 Identities=9% Similarity=0.027 Sum_probs=126.9
Q ss_pred cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338 2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK 81 (488)
Q Consensus 2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~ 81 (488)
++.|+.++.+....+..+.+|.||||.|+..|+.+++++|++.+. +++.+|.+|+||||+||..|+ .
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~tpLh~A~~~g~-------~----- 67 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMN-DPSQPNEEGITALHNAICGAN-------Y----- 67 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSS-CTTCCCTTSCCHHHHHHHTTC-------H-----
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCC-CCCCCCCCCCCHHHHHHHcCC-------H-----
Confidence 577888888777767788999999999999999999999999855 578999999999999999982 2
Q ss_pred HhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhh
Q 011338 82 WIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCR 161 (488)
Q Consensus 82 li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~ 161 (488)
++++.|++
T Consensus 68 ------------------------------------------------------------------------~~v~~Ll~ 75 (229)
T 2vge_A 68 ------------------------------------------------------------------------SIVDFLIT 75 (229)
T ss_dssp ------------------------------------------------------------------------HHHHHHHH
T ss_pred ------------------------------------------------------------------------HHHHHHHH
Confidence 23334444
Q ss_pred hhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHH--HhcCChhHHHHHHhcCCcc---
Q 011338 162 EISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYA--TLQRQEKIFNLIYTMGAKK--- 236 (488)
Q Consensus 162 ~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A--~~~~~~~iv~~Ll~~~~~~--- 236 (488)
.+.+.+. +|..|+||||+|+..|+.+++++|++.+++.....|.+|+||||+| +..|+.+++++|++.|++.
T Consensus 76 ~ga~~n~---~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~ 152 (229)
T 2vge_A 76 AGANVNS---PDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLM 152 (229)
T ss_dssp TTCCTTC---CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccc
Confidence 4433332 4566777777777777777777777777765444345777777777 7777777777777654321
Q ss_pred -------------------------ccccccccCCCCcHHHHHHHhCCCCCccc
Q 011338 237 -------------------------NSVATNWDKAHNNILHQAAFLAPSSQLDR 265 (488)
Q Consensus 237 -------------------------~~~~~~~D~~G~TpLhlA~~~~~~~~v~~ 265 (488)
+..++.+|.+|+||||+|+..|+.++|+.
T Consensus 153 ~~~~~~~l~~~~~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~ 206 (229)
T 2vge_A 153 NSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR 206 (229)
T ss_dssp GGGEEEESSCBCCSSTTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred cCCchHHHHHHhhccccccCccccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence 12267889999999999999999988864
No 44
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.93 E-value=5.7e-26 Score=219.45 Aligned_cols=161 Identities=17% Similarity=0.139 Sum_probs=123.6
Q ss_pred CCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCC
Q 011338 18 KGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNN 97 (488)
Q Consensus 18 ~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~ 97 (488)
+|.+|+||||+|+..|+.+++++|++.++..++.+|.+|.||||+|+.....
T Consensus 107 ~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~---------------------------- 158 (276)
T 4hbd_A 107 ADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLK---------------------------- 158 (276)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCC----------------------------
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhh----------------------------
Confidence 5667777777777777777777777776556677777777777777754310
Q ss_pred CCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcc
Q 011338 98 ISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIK 177 (488)
Q Consensus 98 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~ 177 (488)
..+ ..++++.+++.+...+. .+..|.
T Consensus 159 -----------------------~~~----------------------------~~~~v~~Ll~~g~~~~~---~~~~g~ 184 (276)
T 4hbd_A 159 -----------------------TQD----------------------------DIETVLQLFRLGNINAK---ASQAGQ 184 (276)
T ss_dssp -----------------------SHH----------------------------HHHHHHHHHHHSCTTCC---CTTTCC
T ss_pred -----------------------hhh----------------------------hHHHHHHHHHcCCCccc---cCCCCC
Confidence 111 23444455554433222 567799
Q ss_pred hHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHh-cCCccccccccccCCCCcHHHHHHH
Q 011338 178 KVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYT-MGAKKNSVATNWDKAHNNILHQAAF 256 (488)
Q Consensus 178 tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~-~~~~~~~~~~~~D~~G~TpLhlA~~ 256 (488)
||||+|+..|+.+++++|++.+++. +.+|.+|+||||+|+.+|+.+++++|++ .|++ ++.+|.+|+||||+|+.
T Consensus 185 tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad----~~~~d~~g~TpL~~A~~ 259 (276)
T 4hbd_A 185 TALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD----ISLTDRDGSTALMVALD 259 (276)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCC----TTCCCTTSCCHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC----CcCcCCCCCCHHHHHHH
Confidence 9999999999999999999998885 4569999999999999999999999999 6766 79999999999999999
Q ss_pred hCCCCCccc
Q 011338 257 LAPSSQLDR 265 (488)
Q Consensus 257 ~~~~~~v~~ 265 (488)
.|+.++++.
T Consensus 260 ~g~~~iv~~ 268 (276)
T 4hbd_A 260 AGQSEIASM 268 (276)
T ss_dssp HTCHHHHHH
T ss_pred cCCHHHHHH
Confidence 999776643
No 45
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.93 E-value=6e-26 Score=201.76 Aligned_cols=153 Identities=13% Similarity=0.099 Sum_probs=130.5
Q ss_pred CchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCC
Q 011338 21 NGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISH 100 (488)
Q Consensus 21 ~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~ 100 (488)
+|.||||.|+..|+.+++++|++.+ ..++.+|.+|.||||+|+..|+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~g~t~L~~A~~~~~-------------------------------- 48 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQE-NVINHTDEEGFTPLMWAAAHGQ-------------------------------- 48 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHS-SCTTCCCTTSCCHHHHHHHTTC--------------------------------
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcC-CCcCCCCCCCCCHHHHHHHCCC--------------------------------
Confidence 5789999999999999999999995 5588999999999999999982
Q ss_pred CCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHH
Q 011338 101 GDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVV 180 (488)
Q Consensus 101 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpL 180 (488)
.++++.|++.+...+. ++..|.|||
T Consensus 49 ----------------------------------------------------~~~v~~Ll~~g~~~~~---~~~~g~t~L 73 (167)
T 3v31_A 49 ----------------------------------------------------IAVVEFLLQNGADPQL---LGKGRESAL 73 (167)
T ss_dssp ----------------------------------------------------HHHHHHHHHTTCCTTC---CCTTCCCHH
T ss_pred ----------------------------------------------------HHHHHHHHHcCCCCCC---cCCCCCcHH
Confidence 2344444444433332 567799999
Q ss_pred HHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCC
Q 011338 181 FIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPS 260 (488)
Q Consensus 181 h~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~ 260 (488)
|+|+..|+.+++++|++.+++.. .+|..|+||||+|+..|+.+++++|++.|++ ++.+|.+|+||||+|+..|+.
T Consensus 74 ~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~l~~A~~~~~~ 148 (167)
T 3v31_A 74 SLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGAD----PTIETDSGYNSMDLAVALGYR 148 (167)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHCCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHHcCcH
Confidence 99999999999999999988754 5699999999999999999999999999876 689999999999999999997
Q ss_pred CCcccc
Q 011338 261 SQLDRV 266 (488)
Q Consensus 261 ~~v~~l 266 (488)
++++.+
T Consensus 149 ~~~~~L 154 (167)
T 3v31_A 149 SVQQVI 154 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766433
No 46
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.93 E-value=6.4e-26 Score=216.50 Aligned_cols=217 Identities=9% Similarity=-0.072 Sum_probs=153.1
Q ss_pred CCCchhHHHHHHHcCCccHHHHHHH----hCcccccccc----CCCChHHHHHh---hCCCCCCCCchhhHHHHHhhhhh
Q 011338 19 GTNGAMLLTSCIIDDIFDIPLDLLQ----RYRKLAYAQD----NDGDTAIDMLA---QKPSAFPSGTQLAFWKKWIYSFI 87 (488)
Q Consensus 19 d~~G~T~LH~A~~~g~~div~~LL~----~~~~~~~~~d----~~G~TpLh~Aa---~~g~~~~s~~~l~~~~~li~~~~ 87 (488)
+..|+|+||.||+.|+.+.++.|++ . +..++..+ .+|+||||+|+ +.| +.++++.++....
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~-~~~~~~~~~~~~~~g~t~L~~A~~~~~~g-------~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTH-KKRLTDEEFREPSTGKTCLPKALLNLSAG-------RNDTIPILLDIAE 73 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHH-TCCTTSGGGSCTTTCCCHHHHHHTSCBTT-------BCTHHHHHHHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCcchhhhhccCCCCcHHHHHHHHhhcC-------CHHHHHHHHHhcc
Confidence 4578999999999999997666666 5 33455554 77999999999 567 4567888887654
Q ss_pred hhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccC
Q 011338 88 YIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQG 167 (488)
Q Consensus 88 ~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~ 167 (488)
....... ..+......+..|.||||.|+..++.++++.|++.+...- ..+.. ......
T Consensus 74 ~~~~~~~-----~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~----------------~~~~~~ 131 (260)
T 3jxi_A 74 KTGNMRE-----FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH-AQARG----------------RFFQPK 131 (260)
T ss_dssp HTTCHHH-----HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCEE----------------CCCSSS
T ss_pred cccchHh-----hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC-ccccc----------------cccCcc
Confidence 3221100 0011112234588999999999998888888877652110 00000 000000
Q ss_pred chhhhhcCcchHHHHHHHcCcHHHHHHHHH---hCCCceeeccCCCccHHHHHHhcCC---------hhHHHHHHhcCCc
Q 011338 168 ESQFEKVGIKKVVFIAVKHGIVEFITEIMK---HYPDIIWCYDDYNRHIFSYATLQRQ---------EKIFNLIYTMGAK 235 (488)
Q Consensus 168 ~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~iv~~Ll~~~~~ 235 (488)
.....+..|.||||+|+..|+.+++++|++ .+.+. +.+|.+|+||||+|+..++ .+++++|++.|++
T Consensus 132 ~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~ 210 (260)
T 3jxi_A 132 DEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAK 210 (260)
T ss_dssp CCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcc
Confidence 000122579999999999999999999999 66664 4669999999999999888 6999999999865
Q ss_pred cc---cccccccCCCCcHHHHHHHhCCCCCcccc
Q 011338 236 KN---SVATNWDKAHNNILHQAAFLAPSSQLDRV 266 (488)
Q Consensus 236 ~~---~~~~~~D~~G~TpLhlA~~~~~~~~v~~l 266 (488)
.. ...+.+|.+|+||||+|+..|+.++++.|
T Consensus 211 ~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L 244 (260)
T 3jxi_A 211 LFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244 (260)
T ss_dssp HCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cccccchhhcccCCCCCHHHHHHHcCCHHHHHHH
Confidence 21 11278999999999999999998776543
No 47
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.93 E-value=1.3e-25 Score=200.19 Aligned_cols=155 Identities=14% Similarity=0.085 Sum_probs=129.6
Q ss_pred CCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccC
Q 011338 17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASN 96 (488)
Q Consensus 17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~ 96 (488)
.....+.|+||.||+.|+.+++++|++.+ ..++.+|.+|.||||+|+..|+
T Consensus 9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~---------------------------- 59 (169)
T 2y1l_E 9 HHGSDLGKKLLEAARAGRDDEVRILMANG-ADVNAEDASGWTPLHLAAFNGH---------------------------- 59 (169)
T ss_dssp ----CHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTC----------------------------
T ss_pred cCCCcccchHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCC----------------------------
Confidence 35678899999999999999999999985 4578899999999999999982
Q ss_pred CCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCc
Q 011338 97 NISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGI 176 (488)
Q Consensus 97 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g 176 (488)
.++++.|++.+.+.+. +|..|
T Consensus 60 --------------------------------------------------------~~~v~~Ll~~g~~~~~---~~~~g 80 (169)
T 2y1l_E 60 --------------------------------------------------------LEIVEVLLKNGADVNA---VDHAG 80 (169)
T ss_dssp --------------------------------------------------------HHHHHHHHHTTCCTTC---CCTTS
T ss_pred --------------------------------------------------------HHHHHHHHHcCCCCCc---cCCCC
Confidence 2344444444444333 56779
Q ss_pred chHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHH
Q 011338 177 KKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAF 256 (488)
Q Consensus 177 ~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~ 256 (488)
.||||+|+..|+.+++++|++.+++.. ..|..|+||||+|+..|+.+++++|++.|++ ++.+|.+|+||||+|+.
T Consensus 81 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~l~~A~~ 155 (169)
T 2y1l_E 81 MTPLRLAALFGHLEIVEVLLKNGADVN-ANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD----VNAQDKFGKTAFDISID 155 (169)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHH
Confidence 999999999999999999999988754 5689999999999999999999999999876 78999999999999999
Q ss_pred hCCCCCcc
Q 011338 257 LAPSSQLD 264 (488)
Q Consensus 257 ~~~~~~v~ 264 (488)
.|+.++++
T Consensus 156 ~~~~~~~~ 163 (169)
T 2y1l_E 156 NGNEDLAE 163 (169)
T ss_dssp TTCHHHHH
T ss_pred hCCHHHHH
Confidence 99876553
No 48
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.93 E-value=3.7e-26 Score=202.70 Aligned_cols=154 Identities=13% Similarity=0.044 Sum_probs=130.4
Q ss_pred CCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCC
Q 011338 18 KGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNN 97 (488)
Q Consensus 18 ~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~ 97 (488)
.|.+|.||||.|+..|+.++++.|++..+...+..|..|+||||+|+..|+
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~----------------------------- 54 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNR----------------------------- 54 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTC-----------------------------
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcCh-----------------------------
Confidence 578899999999999999999999998888888889999999999999982
Q ss_pred CCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcc
Q 011338 98 ISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIK 177 (488)
Q Consensus 98 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~ 177 (488)
.++++.|++.+.+.+. +|.+|.
T Consensus 55 -------------------------------------------------------~~~v~~Ll~~g~~~~~---~~~~g~ 76 (165)
T 3twr_A 55 -------------------------------------------------------VSVVEYLLQHGADVHA---KDKGGL 76 (165)
T ss_dssp -------------------------------------------------------HHHHHHHHHTTCCTTC---CCTTSC
T ss_pred -------------------------------------------------------HHHHHHHHhcCCCCCc---cCCCCC
Confidence 2344444454444433 577899
Q ss_pred hHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHh
Q 011338 178 KVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFL 257 (488)
Q Consensus 178 tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~ 257 (488)
||||+|+..|+.+++++|++.+.+.. .+|..|+||||+|+.+|+.+++++|++.|++ ++.+|.+|+||||+|+.
T Consensus 77 t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~a~~- 150 (165)
T 3twr_A 77 VPLHNACSYGHYEVAELLVKHGAVVN-VADLWKFTPLHEAAAKGKYEICKLLLQHGAD----PTKKNRDGNTPLDLVKD- 150 (165)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCTGGGSCT-
T ss_pred CHHHHHHHcCcHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CcccCCCCCChhHhHhc-
Confidence 99999999999999999999988754 5699999999999999999999999999876 79999999999999876
Q ss_pred CCCCCcc
Q 011338 258 APSSQLD 264 (488)
Q Consensus 258 ~~~~~v~ 264 (488)
++.++++
T Consensus 151 ~~~~i~~ 157 (165)
T 3twr_A 151 GDTDIQD 157 (165)
T ss_dssp TCHHHHH
T ss_pred CChHHHH
Confidence 7655543
No 49
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.93 E-value=1e-25 Score=197.52 Aligned_cols=150 Identities=13% Similarity=0.090 Sum_probs=126.7
Q ss_pred CchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCC
Q 011338 21 NGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISH 100 (488)
Q Consensus 21 ~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~ 100 (488)
++.|+||.|+..|+.+++++|++.++.. + .|..|.||||+|+..|+
T Consensus 1 d~~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~-------------------------------- 46 (153)
T 1awc_B 1 DLGKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGH-------------------------------- 46 (153)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTC--------------------------------
T ss_pred CccHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCC--------------------------------
Confidence 4679999999999999999999997643 3 68899999999999882
Q ss_pred CCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHH
Q 011338 101 GDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVV 180 (488)
Q Consensus 101 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpL 180 (488)
.++++.|++.+...+. ++..|.|||
T Consensus 47 ----------------------------------------------------~~~v~~Ll~~g~~~~~---~~~~g~t~L 71 (153)
T 1awc_B 47 ----------------------------------------------------FSTTEVLLRAGVSRDA---RTKVDRTPL 71 (153)
T ss_dssp ----------------------------------------------------HHHHHHHHTTTCCTTC---CCTTCCCHH
T ss_pred ----------------------------------------------------HHHHHHHHHcCCCCCC---CCCCCCCHH
Confidence 2334444444444333 567799999
Q ss_pred HHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCC
Q 011338 181 FIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPS 260 (488)
Q Consensus 181 h~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~ 260 (488)
|+|+..|+.+++++|++.+++. +.+|..|+||||+|+.+|+.+++++|++.|++ ++.+|.+|+||||+|+..|+.
T Consensus 72 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~A~~~~~~ 146 (153)
T 1awc_B 72 HMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGAD----VHTQSKFCKTAFDISIDNGNE 146 (153)
T ss_dssp HHHHHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----ccccCCCCCCHHHHHHHcCCH
Confidence 9999999999999999998875 45699999999999999999999999999876 789999999999999999987
Q ss_pred CCcc
Q 011338 261 SQLD 264 (488)
Q Consensus 261 ~~v~ 264 (488)
++++
T Consensus 147 ~i~~ 150 (153)
T 1awc_B 147 DLAE 150 (153)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 50
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.93 E-value=2.7e-26 Score=213.66 Aligned_cols=201 Identities=11% Similarity=0.101 Sum_probs=158.0
Q ss_pred cCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCCCCCCCCCCCc
Q 011338 32 DDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPA 111 (488)
Q Consensus 32 ~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 111 (488)
+|+.+++++|++++++..+..|.+|+||||+||..| +.+.++.++.....+ ...+..
T Consensus 1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g-------~~~~v~~Ll~~g~~~----------------~~~~~~ 57 (223)
T 2f8y_A 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS-------RSDAAKRLLEASADA----------------NIQDNM 57 (223)
T ss_dssp ----CCEETTEETTCCTTCCCTTTCCCHHHHHHHTT-------CHHHHHHHHHTTCCT----------------TCCCTT
T ss_pred CCcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcC-------CHHHHHHHHHcCCCC----------------CCcCCC
Confidence 478899999999988766667999999999999999 467777777543322 124567
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHH
Q 011338 112 EHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEF 191 (488)
Q Consensus 112 ~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~ 191 (488)
+.||+|.|+..++.++++.+++.+... .+ .++..|.||||+|+..|+.++
T Consensus 58 g~t~L~~A~~~~~~~~v~~Ll~~~~~~---------------------------~~---~~~~~g~t~L~~A~~~~~~~~ 107 (223)
T 2f8y_A 58 GRTPLHAAVSADAQGVFQILIRNRATD---------------------------LD---ARMHDGTTPLILAARLAVEGM 107 (223)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHBTTSC---------------------------TT---CCCTTCCCHHHHHHHHTCHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC---------------------------cc---cCCCCCCcHHHHHHHhCcHHH
Confidence 889999999988888888777654211 11 146679999999999999999
Q ss_pred HHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCCCcccccchHH
Q 011338 192 ITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAAL 271 (488)
Q Consensus 192 v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l~~~~l 271 (488)
+++|++.+++. ...|..|+||||+|+..|+.+++++|++.|++ ++.+|.+|+||||+|+..|+.++++.+.
T Consensus 108 ~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll---- 178 (223)
T 2f8y_A 108 LEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN----KDMQNNREETPLFLAAREGSYETAKVLL---- 178 (223)
T ss_dssp HHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTCCCHHHHHHHHTCHHHHHHHH----
T ss_pred HHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCcCHHHHHHHcCCHHHHHHHH----
Confidence 99999998875 45689999999999999999999999999876 7899999999999999999866553221
Q ss_pred hhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhHH
Q 011338 272 QMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQ 309 (488)
Q Consensus 272 ~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~~ 309 (488)
+ ...+.+.+|.+|.||++++.+.
T Consensus 179 ------------~---~ga~~~~~~~~g~t~l~~A~~~ 201 (223)
T 2f8y_A 179 ------------D---HFANRDITDHMDRLPRDIAQER 201 (223)
T ss_dssp ------------H---TTCCTTCCCTTCCCHHHHHHHT
T ss_pred ------------H---cCCCCccccccCCCHHHHHHHh
Confidence 1 1234567789999999998664
No 51
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.93 E-value=1.4e-25 Score=196.96 Aligned_cols=150 Identities=13% Similarity=0.073 Sum_probs=127.9
Q ss_pred CchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCC
Q 011338 21 NGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISH 100 (488)
Q Consensus 21 ~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~ 100 (488)
.|.||||.|+..|+.+++++|++..+..++.+|.+|+||||+ |..|+
T Consensus 1 r~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~-------------------------------- 47 (156)
T 1bd8_A 1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGS-------------------------------- 47 (156)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTC--------------------------------
T ss_pred CcchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCC--------------------------------
Confidence 368999999999999999999999666788999999999999 87772
Q ss_pred CCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHH
Q 011338 101 GDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVV 180 (488)
Q Consensus 101 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpL 180 (488)
.++++.+++.+.+.+. +|..|.|||
T Consensus 48 ----------------------------------------------------~~~v~~Ll~~g~~~~~---~~~~g~t~L 72 (156)
T 1bd8_A 48 ----------------------------------------------------TAIALELLKQGASPNV---QDTSGTSPV 72 (156)
T ss_dssp ----------------------------------------------------HHHHHHHHHTTCCTTC---CCTTSCCHH
T ss_pred ----------------------------------------------------HHHHHHHHHCCCCCCC---cCCCCCCHH
Confidence 2344444554444433 577899999
Q ss_pred HHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCC
Q 011338 181 FIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPS 260 (488)
Q Consensus 181 h~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~ 260 (488)
|+|+..|+.+++++|++.+++. +.+|.+|+||||+|+.+|+.+++++|++. ++ ++.+|.+|+||||+|+..|+.
T Consensus 73 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~----~~~~~~~g~t~l~~A~~~~~~ 146 (156)
T 1bd8_A 73 HDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD----LHRRDARGLTPLELALQRGAQ 146 (156)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC----TTCCCTTSCCHHHHHHHSCCH
T ss_pred HHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC----CCCcCCCCCCHHHHHHHcCcH
Confidence 9999999999999999998775 45699999999999999999999999988 54 789999999999999999987
Q ss_pred CCcc
Q 011338 261 SQLD 264 (488)
Q Consensus 261 ~~v~ 264 (488)
++++
T Consensus 147 ~~v~ 150 (156)
T 1bd8_A 147 DLVD 150 (156)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 52
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.92 E-value=8.2e-27 Score=234.09 Aligned_cols=245 Identities=9% Similarity=-0.061 Sum_probs=179.0
Q ss_pred CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338 1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK 80 (488)
Q Consensus 1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~ 80 (488)
+|++|++.+.+.+. +|.+|.||||+|+..|+.+++++|++.+. +..+.+|.||||+|+..| +.++++
T Consensus 35 ~v~~Ll~~g~~~~~---~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~---~~~~~~g~t~L~~A~~~g-------~~~~v~ 101 (364)
T 3ljn_A 35 EVRRLIETGVSPTI---QNRFGCTALHLACKFGCVDTAKYLASVGE---VHSLWHGQKPIHLAVMAN-------KTDLVV 101 (364)
T ss_dssp HHHHHHHTTCCTTC---CCTTCCCHHHHHHHHCCHHHHHHHHHHCC---CCCCBTTBCHHHHHHHTT-------CHHHHH
T ss_pred HHHHHHHcCCCccc---cCCCCCcHHHHHHHcCCHHHHHHHHHCCC---CccccCCCCHHHHHHHcC-------CHHHHH
Confidence 47889988876554 78999999999999999999999999966 334468999999999999 577888
Q ss_pred HHhhhhhh----hhhccccCCCC-CCCCCCCCCCCchhhhhHHHHHHH--HHHHHHHHhhccchhhhhHHHH--HHhh--
Q 011338 81 KWIYSFIY----IRSAYASNNIS-HGDIERPHQGPAEHKNFFTRAMTK--LLHMVWKSLNLFVPAIKHIYEV--KLAH-- 149 (488)
Q Consensus 81 ~li~~~~~----v~~~~~~~~~~-~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~--~~~h-- 149 (488)
.++..... .+......... .........+..|.||||.|+..+ +.++++.|++.+.. ++..+.. ...|
T Consensus 102 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A 180 (364)
T 3ljn_A 102 ALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS-PTAKDKADETPLMRA 180 (364)
T ss_dssp HHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC-TTCCCTTSCCHHHHH
T ss_pred HHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC-CcccCCCCCCHHHHH
Confidence 88876322 21111000000 000001113446889999999999 99999999998642 1111111 1112
Q ss_pred --HhHHHHHHHHhhhhcc-----cCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCC
Q 011338 150 --VQTQELLSCVCREIST-----QGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQ 222 (488)
Q Consensus 150 --~~~~~il~~l~~~~~~-----~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~ 222 (488)
.+..++++.|++.+.. .+. +|..|.||||+|+..|+.+++++|++++++. +.+|.+|+||||+|+.+|+
T Consensus 181 ~~~g~~~~v~~Ll~~g~~~~~~~~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~g~ 256 (364)
T 3ljn_A 181 MEFRNREALDLMMDTVPSKSSLRLDY---ANKQGNSHLHWAILINWEDVAMRFVEMGIDV-NMEDNEHTVPLYLSVRAAM 256 (364)
T ss_dssp HHTTCHHHHHHHHHHCSCSSSCCTTC---CCTTCCCTTHHHHTTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHhcccccccccccc---cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhCh
Confidence 2346788888887665 333 6788999999999999999999999998885 4669999999999999999
Q ss_pred hhHHHHHHhcCCcc--------ccccccccCCCCcHHHHHHHhCCCCCc
Q 011338 223 EKIFNLIYTMGAKK--------NSVATNWDKAHNNILHQAAFLAPSSQL 263 (488)
Q Consensus 223 ~~iv~~Ll~~~~~~--------~~~~~~~D~~G~TpLhlA~~~~~~~~v 263 (488)
.+++++|++.+++. .......|..|+|||++|+..|+.+.+
T Consensus 257 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v 305 (364)
T 3ljn_A 257 VLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEV 305 (364)
T ss_dssp HHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHH
T ss_pred HHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHH
Confidence 99999999987542 111223678899999999988764433
No 53
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.92 E-value=1.5e-25 Score=200.07 Aligned_cols=143 Identities=15% Similarity=0.167 Sum_probs=121.7
Q ss_pred CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338 1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK 80 (488)
Q Consensus 1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~ 80 (488)
+|++|++.+++.+. +|.+|+||||+|+..|+.++++.|++.+ .+++.+|.+|+||||+||..|+
T Consensus 19 ~v~~Ll~~Gadvn~---~d~~g~t~l~~a~~~~~~~~~~~ll~~g-ad~~~~d~~g~TpLh~A~~~g~------------ 82 (169)
T 4gpm_A 19 RVKDLIENGADVNA---SDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNAKDSDGRTPLHHAAENGH------------ 82 (169)
T ss_dssp HHHHHHHTTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTC------------
T ss_pred HHHHHHHCCCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHhcc-cchhhhccCCCCHHHHHHHcCC------------
Confidence 47899999887665 7999999999999999999999999985 4578999999999999999982
Q ss_pred HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHh
Q 011338 81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVC 160 (488)
Q Consensus 81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~ 160 (488)
.++++.|+
T Consensus 83 ------------------------------------------------------------------------~~~v~~Ll 90 (169)
T 4gpm_A 83 ------------------------------------------------------------------------KEVVKLLI 90 (169)
T ss_dssp ------------------------------------------------------------------------HHHHHHHH
T ss_pred ------------------------------------------------------------------------HHHHHHHH
Confidence 23455555
Q ss_pred hhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCc
Q 011338 161 REISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAK 235 (488)
Q Consensus 161 ~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~ 235 (488)
+.+.+++. +|.+|+||||+||+.|+.+++++|++.+++. ..+|.+|+||||+|+++|+.+++++|++.|++
T Consensus 91 ~~gadvn~---~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ 161 (169)
T 4gpm_A 91 SKGADVNA---KDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW 161 (169)
T ss_dssp HTTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred HCcCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 55555544 6788999999999999999999999998885 45699999999999999999999999999986
No 54
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.92 E-value=2e-25 Score=197.10 Aligned_cols=152 Identities=13% Similarity=0.087 Sum_probs=127.3
Q ss_pred CchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCC
Q 011338 21 NGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISH 100 (488)
Q Consensus 21 ~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~ 100 (488)
...||||.|+..|+.+++++|++.+. .++.+|.+|+||||+|+. |+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~~-~~-------------------------------- 49 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNV-NVNAQNGFGRTALQVMKL-GN-------------------------------- 49 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCC-CTTCCCTTSCCHHHHCCS-SC--------------------------------
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCC-CccccCccCccHHHHHHc-Cc--------------------------------
Confidence 46899999999999999999998754 578899999999999998 72
Q ss_pred CCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHH
Q 011338 101 GDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVV 180 (488)
Q Consensus 101 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpL 180 (488)
.++++.|++.+.+.+. +|..|.|||
T Consensus 50 ----------------------------------------------------~~~v~~Ll~~g~~~~~---~~~~g~t~L 74 (162)
T 1ihb_A 50 ----------------------------------------------------PEIARRLLLRGANPDL---KDRTGFAVI 74 (162)
T ss_dssp ----------------------------------------------------HHHHHHHHHTTCCTTC---CCTTSCCHH
T ss_pred ----------------------------------------------------HHHHHHHHHcCCCCCC---CCCCCCCHH
Confidence 2344444444444333 577899999
Q ss_pred HHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCC
Q 011338 181 FIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPS 260 (488)
Q Consensus 181 h~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~ 260 (488)
|+|+..|+.+++++|++.+++. +.+|.+|+||||+|+.+|+.+++++|++.+++ .++.+|.+|+||||+|+..|+.
T Consensus 75 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~~g~t~l~~A~~~~~~ 150 (162)
T 1ihb_A 75 HDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS---NVGHRNHKGDTACDLARLYGRN 150 (162)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC---CTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC---CCCCcCCCCCcHHHHHHHcCCH
Confidence 9999999999999999998775 45699999999999999999999999999865 3689999999999999999987
Q ss_pred CCccc
Q 011338 261 SQLDR 265 (488)
Q Consensus 261 ~~v~~ 265 (488)
++++.
T Consensus 151 ~~~~~ 155 (162)
T 1ihb_A 151 EVVSL 155 (162)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 55
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.92 E-value=1.8e-25 Score=201.25 Aligned_cols=152 Identities=11% Similarity=0.033 Sum_probs=128.1
Q ss_pred CCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCC
Q 011338 20 TNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNIS 99 (488)
Q Consensus 20 ~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~ 99 (488)
.++.++||.||..|+.+++++|++.++.+++.+|.+|+||||+||..|+
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~------------------------------- 51 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGR------------------------------- 51 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTC-------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCc-------------------------------
Confidence 4678999999999999999999999888899999999999999999982
Q ss_pred CCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchH
Q 011338 100 HGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKV 179 (488)
Q Consensus 100 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tp 179 (488)
.++++.|++.+.+.+. +|..|.||
T Consensus 52 -----------------------------------------------------~~~v~~Ll~~g~~~~~---~~~~g~t~ 75 (179)
T 3f6q_A 52 -----------------------------------------------------SAVVEMLIMRGARINV---MNRGDDTP 75 (179)
T ss_dssp -----------------------------------------------------HHHHHHHHHTTCCTTC---CCTTCCCH
T ss_pred -----------------------------------------------------HHHHHHHHHcCCCCCC---cCCCCCCH
Confidence 2344445554444433 57789999
Q ss_pred HHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCC
Q 011338 180 VFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAP 259 (488)
Q Consensus 180 Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~ 259 (488)
||+|+..|+.+++++|++.+++. +.+|..|+||||+|+..|+.+++++|++.|++ ++.+|.+|+||||+|+..++
T Consensus 76 L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~tpl~~A~~~~~ 150 (179)
T 3f6q_A 76 LHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGAL----VSICNKYGEMPVDKAKAPLR 150 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----SSBCCTTSCCGGGGSCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----cchhccCCCCcHHHHHHHHH
Confidence 99999999999999999998875 45699999999999999999999999999876 79999999999999998776
Q ss_pred CCCc
Q 011338 260 SSQL 263 (488)
Q Consensus 260 ~~~v 263 (488)
.+++
T Consensus 151 ~~~~ 154 (179)
T 3f6q_A 151 ELLR 154 (179)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 56
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.92 E-value=6e-26 Score=224.80 Aligned_cols=215 Identities=10% Similarity=-0.068 Sum_probs=139.3
Q ss_pred CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCc----------------------------------
Q 011338 1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYR---------------------------------- 46 (488)
Q Consensus 1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~---------------------------------- 46 (488)
+|+||++++.+... +|..|.|++| |+.++++.||+++.
T Consensus 34 lv~~ll~~ga~i~~---~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~ 105 (327)
T 1sw6_A 34 LTSDFLSSPLKIMK---ALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSF 105 (327)
T ss_dssp CCCSTTTSSCCCEE---CBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CH
T ss_pred hHHHHhhCCccccc---CCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHH
Confidence 46788888776554 5677777776 77777777776641
Q ss_pred ---------------ccccc-ccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCCCCCCCCCCC
Q 011338 47 ---------------KLAYA-QDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGP 110 (488)
Q Consensus 47 ---------------~~~~~-~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~ 110 (488)
.+++. +|.+|+||||+||..| +.++++.|+....+++ ..+.
T Consensus 106 ~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g-------~~~~v~~Ll~~Gad~n----------------~~d~ 162 (327)
T 1sw6_A 106 DSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIA-------NLELVKHLVKHGSNRL----------------YGDN 162 (327)
T ss_dssp HHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTT-------CHHHHHHHHHTTCCTT----------------BCCT
T ss_pred HhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcC-------CHHHHHHHHHcCCCCC----------------CcCC
Confidence 22344 5666777777777776 3555666654433221 1344
Q ss_pred chhhhhHHHHHHHH---HHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHHHHHHH--
Q 011338 111 AEHKNFFTRAMTKL---LHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVK-- 185 (488)
Q Consensus 111 ~~~t~l~~a~~~~~---~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~-- 185 (488)
.|.||||.|+..++ .++++.+ ++.+.. ..+ .+|..|+||||+|++
T Consensus 163 ~g~TpLh~A~~~g~~~~~~~~~~l------------------------l~~~~~---~~~---~~d~~g~tpLh~A~~~~ 212 (327)
T 1sw6_A 163 MGESCLVKAVKSVNNYDSGTFEAL------------------------LDYLYP---CLI---LEDSMNRTILHHIIITS 212 (327)
T ss_dssp TCCCHHHHHHHSSHHHHTTCHHHH------------------------HHHHGG---GGG---EECTTCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHhcccccHHHHHHH------------------------HHhhhc---ccc---CCCCCCCCHHHHHHHHc
Confidence 56677777765544 2222222 222222 122 267789999999999
Q ss_pred --cCcHHHHHHHHHh--------------------CCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccc
Q 011338 186 --HGIVEFITEIMKH--------------------YPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNW 243 (488)
Q Consensus 186 --~G~~~~v~~Ll~~--------------------~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~ 243 (488)
.|+.++++.|++. +.+ .+.+|..|+||||.|+. +++|++.+ +|.+
T Consensus 213 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~-~~~~~~~g~t~L~~a~~------~~~Ll~~~------~n~~ 279 (327)
T 1sw6_A 213 GMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK-PNDKNGERKDSILENLD------LKWIIANM------LNAQ 279 (327)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS------HHHHHHHT------TTCC
T ss_pred cccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC-cccccccCCChhHHHHH------HHHHHHhC------CCCC
Confidence 9999999999987 444 45668999999999986 89999873 7899
Q ss_pred cCCCCcHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhH
Q 011338 244 DKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSD 308 (488)
Q Consensus 244 D~~G~TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~ 308 (488)
|.+|+||||+|+..|+.++++.|. + ...+.+.+|++|+||++++.+
T Consensus 280 d~~G~TpLh~A~~~g~~~~v~~Ll----------------~---~Gad~~~~d~~G~TpL~~A~~ 325 (327)
T 1sw6_A 280 DSNGDTCLNIAARLGNISIVDALL----------------D---YGADPFIANKSGLRPVDFGAG 325 (327)
T ss_dssp CTTSCCHHHHHHHHCCHHHHHHHH----------------H---TTCCTTCCCTTSCCGGGGTCC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHH----------------H---cCCCCcccCCCCCCHHHHHHh
Confidence 999999999999999976654321 0 234567889999999999754
No 57
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.91 E-value=8.4e-25 Score=208.19 Aligned_cols=203 Identities=13% Similarity=0.099 Sum_probs=150.0
Q ss_pred CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338 1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK 80 (488)
Q Consensus 1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~ 80 (488)
++++|++++++... ..|.+|.||||+|+..|+.+++++|++.+ ..++.+|.+|+||||+|+..| ..++++
T Consensus 38 ~v~~Ll~~g~~~~~--~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~-------~~~~v~ 107 (253)
T 1yyh_A 38 VISDFIYQGASLHN--QTDRTGETALHLAARYSRSDAAKRLLEAS-ADANIQDNMGRTPLHAAVSAD-------AQGVFQ 107 (253)
T ss_dssp ----------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHT-------CHHHHH
T ss_pred HHHHHHHccCCccc--ccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcC-------CHHHHH
Confidence 46788888775432 36899999999999999999999999985 457899999999999999998 466677
Q ss_pred HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHH--HHHhh----HhHHH
Q 011338 81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYE--VKLAH----VQTQE 154 (488)
Q Consensus 81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~--~~~~h----~~~~~ 154 (488)
.++.... . .....+..|.||+|.|+..++.++++.+++.+.. ++..+. ....| .+..+
T Consensus 108 ~Ll~~~~-----------~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~ 171 (253)
T 1yyh_A 108 ILIRNRA-----------T----DLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVD 171 (253)
T ss_dssp HHHHSTT-----------S----CTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHH
T ss_pred HHHHcCC-----------C----CccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHH
Confidence 6664321 0 1112456789999999999999999999987632 111111 11112 23467
Q ss_pred HHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcC
Q 011338 155 LLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMG 233 (488)
Q Consensus 155 il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~ 233 (488)
+++.|++.+.+.+. +|..|.||||+|++.|+.+++++|++++++. ..+|..|+||||+|+++|+.+++++|....
T Consensus 172 ~v~~Ll~~ga~~~~---~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~ 246 (253)
T 1yyh_A 172 AAVVLLKNGANKDM---QNNREETPLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQERMHHDIVRLLDLEH 246 (253)
T ss_dssp HHHHHHHTTCCTTC---CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred HHHHHHHcCCCCCC---cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 88888888776654 6788999999999999999999999999885 456999999999999999999999998764
No 58
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.91 E-value=3e-24 Score=201.16 Aligned_cols=190 Identities=10% Similarity=0.011 Sum_probs=145.2
Q ss_pred ccccccc-CccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCcccc----ccccCCCChHHHHHhhCCCCCCCCchh
Q 011338 2 VRYLYRE-TPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLA----YAQDNDGDTAIDMLAQKPSAFPSGTQL 76 (488)
Q Consensus 2 v~~L~~~-~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~----~~~d~~G~TpLh~Aa~~g~~~~s~~~l 76 (488)
|++|+++ +.+.+. +|.+|+||||+|+..|+.+++++|++.+++.. +.+|.+|.||||+|+..| ..
T Consensus 19 v~~Ll~~~g~~~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~-------~~ 88 (232)
T 2rfa_A 19 LSKLLKFEGCEVHQ---RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQ-------NV 88 (232)
T ss_dssp HHHHHTTTCSCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTT-------CH
T ss_pred HHHHHHhcCCCccc---CCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcC-------CH
Confidence 5777776 544433 78999999999999999999999999977643 567789999999999999 46
Q ss_pred hHHHHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHH
Q 011338 77 AFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELL 156 (488)
Q Consensus 77 ~~~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il 156 (488)
++++.++....++..... ...........+..|.||+|.|+..++.++++.|++.+
T Consensus 89 ~~v~~Ll~~g~~~~~~~~---~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--------------------- 144 (232)
T 2rfa_A 89 NLVRALLARGASVSARAT---GSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG--------------------- 144 (232)
T ss_dssp HHHHHHHHTTCCTTCCCC---SGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTT---------------------
T ss_pred HHHHHHHhCCCCCCcccC---CcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCC---------------------
Confidence 778888776544322110 00011111223447899999999888777777666544
Q ss_pred HHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHH----HHHHHhCCCce-----eeccCCCccHHHHHHhcCChhHHH
Q 011338 157 SCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFI----TEIMKHYPDII-----WCYDDYNRHIFSYATLQRQEKIFN 227 (488)
Q Consensus 157 ~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v----~~Ll~~~~~~~-----~~~d~~g~t~Lh~A~~~~~~~iv~ 227 (488)
.+.+. +|..|+||||+|+..|+.+++ ++|++.+++.. ..+|..|+||||+|+++|+.++++
T Consensus 145 -------a~~~~---~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~ 214 (232)
T 2rfa_A 145 -------ADIRA---QDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQ 214 (232)
T ss_dssp -------CCTTC---CCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred -------CCCCC---CCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHH
Confidence 22222 577899999999999999988 99999988653 467999999999999999999999
Q ss_pred HHHhcCCc
Q 011338 228 LIYTMGAK 235 (488)
Q Consensus 228 ~Ll~~~~~ 235 (488)
+|++++..
T Consensus 215 ~Ll~~g~~ 222 (232)
T 2rfa_A 215 HLMQKRKH 222 (232)
T ss_dssp HHHHHHHH
T ss_pred HHHhcCcc
Confidence 99998743
No 59
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.91 E-value=6e-25 Score=206.71 Aligned_cols=205 Identities=11% Similarity=0.008 Sum_probs=154.6
Q ss_pred CcccccccCccc-cCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHH
Q 011338 1 MVRYLYRETPIA-ELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFW 79 (488)
Q Consensus 1 mv~~L~~~~~~~-~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~ 79 (488)
++++|+...... .....+|.+|.||||+|+..|+.+++++|++.+ ..++.+|.+|+||||+|+..| ....+
T Consensus 23 ~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~-------~~~~v 94 (236)
T 1ikn_D 23 LTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG-CDPELRDFRGNTPLHLACEQG-------CLASV 94 (236)
T ss_dssp SSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC-CCSCCCCTTCCCHHHHHHHHT-------CHHHH
T ss_pred HHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcC-------CHHHH
Confidence 467888876532 112347889999999999999999999999884 557889999999999999999 46677
Q ss_pred HHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHH
Q 011338 80 KKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCV 159 (488)
Q Consensus 80 ~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l 159 (488)
+.++..+... .........+..|.||||.|+..++.++++.|++.+
T Consensus 95 ~~Ll~~~~~~----------~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g------------------------ 140 (236)
T 1ikn_D 95 GVLTQSCTTP----------HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG------------------------ 140 (236)
T ss_dssp HHHHHSTTTT----------SSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT------------------------
T ss_pred HHHHhcccch----------hHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC------------------------
Confidence 7777554321 000011224557899999999888777776665544
Q ss_pred hhhhcccCchhhhhc-CcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCcccc
Q 011338 160 CREISTQGESQFEKV-GIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNS 238 (488)
Q Consensus 160 ~~~~~~~~~~~~~~~-~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~ 238 (488)
.+.+. ++. .|.||||+|+..|+.+++++|++.+.+. ..+|..|+||||+|+.+|+.+++++|++.|++.
T Consensus 141 ----~~~~~---~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~-- 210 (236)
T 1ikn_D 141 ----ADVNA---QEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN-- 210 (236)
T ss_dssp ----CCTTC---CCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCS-CCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGG--
T ss_pred ----CCCCC---CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccCCCCCHHHHHHccCchHHHHHHHHcchhh--
Confidence 23222 444 7999999999999999999999998875 466999999999999999999999999999752
Q ss_pred ccccccCCCCcHHHHHHHh
Q 011338 239 VATNWDKAHNNILHQAAFL 257 (488)
Q Consensus 239 ~~~~~D~~G~TpLhlA~~~ 257 (488)
....++.+|.||.+.+...
T Consensus 211 ~~~~~~~~~~~~~~~~~~~ 229 (236)
T 1ikn_D 211 LQMLPESEDEESYDTESEF 229 (236)
T ss_dssp GSSCCCCCTTTCCCCC---
T ss_pred hhcCCccchHHHHhhhccc
Confidence 3467899999998876554
No 60
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.91 E-value=6.3e-25 Score=213.13 Aligned_cols=192 Identities=12% Similarity=0.086 Sum_probs=153.6
Q ss_pred CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338 1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK 80 (488)
Q Consensus 1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~ 80 (488)
+|++|++.+.+.+. .+|+||||+|+..|+.+++++|++.+. .++.+|..|+||||+|+..| ..++++
T Consensus 46 ~v~~Ll~~g~~~~~-----~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~d~~g~t~L~~A~~~g-------~~~~v~ 112 (285)
T 3kea_A 46 LVCTLLNAGALKNL-----LENEFPLHQAATLEDTKIVKILLFSGL-DDSQFDDKGNTALYYAVDSG-------NMQTVK 112 (285)
T ss_dssp HHHHHHHTTGGGSC-----CTTCCHHHHHTTSSSCHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTT-------CHHHHH
T ss_pred HHHHHHhCCCCCCC-----CCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCcCCCCCcHHHHHHHcC-------CHHHHH
Confidence 46788888776543 259999999999999999999999854 57889999999999999999 577888
Q ss_pred HHhhhhhhhhhccccCCCCCCCCCCCCCCCch-hhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHH
Q 011338 81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAE-HKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCV 159 (488)
Q Consensus 81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l 159 (488)
.++....++.. .+..| .||+|.|+..++.++++.+++.+.
T Consensus 113 ~Ll~~ga~~~~----------------~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~----------------------- 153 (285)
T 3kea_A 113 LFVKKNWRLMF----------------YGKTGWKTSFYHAVMLNDVSIVSYFLSEIP----------------------- 153 (285)
T ss_dssp HHHHHCGGGGG----------------CSSSGGGSHHHHHHHTTCHHHHHHHHTTSC-----------------------
T ss_pred HHHhcCCCCCc----------------cCCCCCCCHHHHHHHcCCHHHHHHHHhCCC-----------------------
Confidence 88876554421 34456 899999999888877777776552
Q ss_pred hhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccH-HHHHHhcCChhHHHHHHhcCCcccc
Q 011338 160 CREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHI-FSYATLQRQEKIFNLIYTMGAKKNS 238 (488)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~-Lh~A~~~~~~~iv~~Ll~~~~~~~~ 238 (488)
... ....|.||||+|+..|+.+++++|++++++. +.+|..|+|| ||+|+.+|+.+++++|++.|++
T Consensus 154 -----~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad--- 220 (285)
T 3kea_A 154 -----STF----DLAILLSCIHITIKNGHVDMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN--- 220 (285)
T ss_dssp -----TTC----CCSTHHHHHHHHHHTTCHHHHHHHHHHHHHT-CTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBC---
T ss_pred -----ccc----cccCCccHHHHHHHcChHHHHHHHHHcCCCC-CcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC---
Confidence 111 1126899999999999999999999998774 4569999998 9999999999999999999987
Q ss_pred ccccccCCCCcHHHHHHHhCCCCCccc
Q 011338 239 VATNWDKAHNNILHQAAFLAPSSQLDR 265 (488)
Q Consensus 239 ~~~~~D~~G~TpLhlA~~~~~~~~v~~ 265 (488)
++.+|. .|+..|+.++++.
T Consensus 221 -~~~~~~-------~a~~~~~~~iv~~ 239 (285)
T 3kea_A 221 -IYSANL-------ENVLLDDAEIAKM 239 (285)
T ss_dssp -STTTTG-------GGGTTTCHHHHHH
T ss_pred -CCCCCh-------hhhhcCCHHHHHH
Confidence 677773 5566777665543
No 61
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.90 E-value=1.5e-23 Score=191.84 Aligned_cols=175 Identities=13% Similarity=0.074 Sum_probs=139.0
Q ss_pred cccccccCc-cccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338 2 VRYLYRETP-IAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK 80 (488)
Q Consensus 2 v~~L~~~~~-~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~ 80 (488)
+++|+.+++ +.+ .+|.+|.||||+|+..|+.+++++|++.+ .+++.+|..|.||||+|+..| ..++++
T Consensus 21 v~~ll~~~~~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~-------~~~~~~ 89 (201)
T 3hra_A 21 VKEILQDTTYQVD---EVDTEGNTPLNIAVHNNDIEIAKALIDRG-ADINLQNSISDSPYLYAGAQG-------RTEILA 89 (201)
T ss_dssp HHHHHTCTTCCTT---CCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTT-------CHHHHH
T ss_pred HHHHHHcCCCCCC---CCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcC-------CHHHHH
Confidence 456666665 322 37889999999999999999999999984 457889999999999999999 466777
Q ss_pred HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHh
Q 011338 81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVC 160 (488)
Q Consensus 81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~ 160 (488)
.++...- ......+..|.||+|.|+..++.++++.+++.+..
T Consensus 90 ~Ll~~~~---------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------------------- 131 (201)
T 3hra_A 90 YMLKHAT---------------PDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE----------------------- 131 (201)
T ss_dssp HHHHHSC---------------CCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCC-----------------------
T ss_pred HHHhccC---------------cccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----------------------
Confidence 7663321 01112455788999999988888777777665421
Q ss_pred hhhcccCchhhhhcCcchHHHHHHHcCc-----HHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcC
Q 011338 161 REISTQGESQFEKVGIKKVVFIAVKHGI-----VEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMG 233 (488)
Q Consensus 161 ~~~~~~~~~~~~~~~g~tpLh~Aa~~G~-----~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~ 233 (488)
..+ .+|..|.||||+|+..|+ .+++++|++.+++. +.+|.+|+||||+|+.+|+.+++++|++.|
T Consensus 132 ----~~~---~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 132 ----DID---FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQ-SIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp ----CTT---CCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred ----CcC---CCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 122 257789999999999998 99999999998875 456999999999999999999999999875
No 62
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.89 E-value=1.3e-23 Score=196.97 Aligned_cols=205 Identities=8% Similarity=-0.057 Sum_probs=155.6
Q ss_pred CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338 1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK 80 (488)
Q Consensus 1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~ 80 (488)
++++|++.+.+... +|.+|.||||+|+..|+.+++++|++.++......+..|.||||+|+..| ..++++
T Consensus 24 ~~~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~-------~~~~v~ 93 (240)
T 3eu9_A 24 RCRELVEAGYDVRQ---PDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQG-------HLSMVV 93 (240)
T ss_dssp HHHHHHHTTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHT-------CHHHHH
T ss_pred HHHHHHHcCCCcCC---CCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcC-------CHHHHH
Confidence 36788888765443 68899999999999999999999999987766666777999999999998 466777
Q ss_pred HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchh-hhhHHHHHHhhHhH-----HH
Q 011338 81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPA-IKHIYEVKLAHVQT-----QE 154 (488)
Q Consensus 81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~h~~~-----~~ 154 (488)
.++.....+ ...+..+.+|+|.|+..++.++++.+++.+... ..........|..+ .+
T Consensus 94 ~Ll~~g~~~----------------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~ 157 (240)
T 3eu9_A 94 QLMKYGADP----------------SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD 157 (240)
T ss_dssp HHHHTTCCT----------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSST
T ss_pred HHHHcCCCC----------------cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHH
Confidence 776543221 123456889999999999999999999876321 11111111112211 34
Q ss_pred HHHHHhhhhcccCchhhhhc-CcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcC
Q 011338 155 LLSCVCREISTQGESQFEKV-GIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMG 233 (488)
Q Consensus 155 il~~l~~~~~~~~~~~~~~~-~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~ 233 (488)
+++.+.+.+...+. .+. .|.||||+|+..|+.+++++|++++++. ..+|..|+||||+|+++|+.+++++|++.+
T Consensus 158 ~~~~L~~~~~~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 158 PTRLLLTFNVSVNL---GDKYHKNTALHWAVLAGNTTVISLLLEAGANV-DAQNIKGESALDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp THHHHHHTTCCTTC---CCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHhcCCCcch---hhccCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence 55566665555443 343 7999999999999999999999998875 456999999999999999999999999987
Q ss_pred Cc
Q 011338 234 AK 235 (488)
Q Consensus 234 ~~ 235 (488)
..
T Consensus 234 ~~ 235 (240)
T 3eu9_A 234 QA 235 (240)
T ss_dssp --
T ss_pred hc
Confidence 54
No 63
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.89 E-value=1.2e-23 Score=202.38 Aligned_cols=193 Identities=12% Similarity=0.012 Sum_probs=134.9
Q ss_pred CCCCchhHHHHHHHc---CCccHHHHHHHhCccc------ccc----ccCCCChHHHHHhhCCCCCCCCchhhHHHHHhh
Q 011338 18 KGTNGAMLLTSCIID---DIFDIPLDLLQRYRKL------AYA----QDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIY 84 (488)
Q Consensus 18 ~d~~G~T~LH~A~~~---g~~div~~LL~~~~~~------~~~----~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~ 84 (488)
+|.+|+||||+|+.. |+.+++++|++.+.+. ++. +|.+|+||||+|+..| ..++++.|+.
T Consensus 50 ~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g-------~~~~v~~Ll~ 122 (273)
T 2pnn_A 50 DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERR-------NMTLVTLLVE 122 (273)
T ss_dssp CTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTT-------CHHHHHHHHH
T ss_pred cCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcC-------CHHHHHHHHH
Confidence 588999999999987 9999999999985431 222 5678999999999999 5778888887
Q ss_pred hhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhc
Q 011338 85 SFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREIS 164 (488)
Q Consensus 85 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~ 164 (488)
...+++....... ............|.||||.|+..++.++++.|++.+. .+.
T Consensus 123 ~ga~~~~~~~~~~--~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-------------------------~ga 175 (273)
T 2pnn_A 123 NGADVQAAANGDF--FKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSW-------------------------QPA 175 (273)
T ss_dssp TTCCTTCCBCSGG--GSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSS-------------------------CCC
T ss_pred CCCCcCccccccc--cccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc-------------------------CCC
Confidence 6544322110000 0000011123368999999999888877777766210 122
Q ss_pred ccCchhhhhcCcchHHHHHHHcCc---------HHHHHHHHHhCCCce------eeccCCCccHHHHHHhcCChhHHHHH
Q 011338 165 TQGESQFEKVGIKKVVFIAVKHGI---------VEFITEIMKHYPDII------WCYDDYNRHIFSYATLQRQEKIFNLI 229 (488)
Q Consensus 165 ~~~~~~~~~~~g~tpLh~Aa~~G~---------~~~v~~Ll~~~~~~~------~~~d~~g~t~Lh~A~~~~~~~iv~~L 229 (488)
+.+. +|.+|+||||+|+..|+ .+++++|++.+++.. ..+|.+|+||||+|+++|+.+++++|
T Consensus 176 d~~~---~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~L 252 (273)
T 2pnn_A 176 DISA---RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYI 252 (273)
T ss_dssp CTTC---CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred Ccee---eCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHH
Confidence 2222 67789999999999998 899999999987754 24799999999999999999999999
Q ss_pred HhcCCccccccccccCCCCcH
Q 011338 230 YTMGAKKNSVATNWDKAHNNI 250 (488)
Q Consensus 230 l~~~~~~~~~~~~~D~~G~Tp 250 (488)
++.|+.. ....+..+.+|
T Consensus 253 l~~ga~d---p~~~~~~~~~~ 270 (273)
T 2pnn_A 253 LQREIHE---PECRHAAAHHH 270 (273)
T ss_dssp HHHHTC---------------
T ss_pred HHCCCCC---chhhhhhhhhc
Confidence 9998731 34444555544
No 64
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.89 E-value=2.4e-23 Score=185.77 Aligned_cols=154 Identities=10% Similarity=-0.022 Sum_probs=121.2
Q ss_pred cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338 2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK 81 (488)
Q Consensus 2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~ 81 (488)
+++|+.+++... ..+|.+|+||||+|+..|+.+++++|++.+ ..++.+|.+|.||||+|+..|+
T Consensus 18 v~~ll~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~------------- 81 (172)
T 3v30_A 18 LKEHLRKGDNLV--NKPDERGFTPLIWASAFGEIETVRFLLEWG-ADPHILAKERESALSLASTGGY------------- 81 (172)
T ss_dssp HHHHHTTCSGGG--GCCCTTSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTCCCHHHHHHHTTC-------------
T ss_pred HHHHHHcCcccc--cCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCchhhcccCCCHHHHHHHCCC-------------
Confidence 567777776421 237889999999999999999999999985 4578899999999999999982
Q ss_pred HhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhh
Q 011338 82 WIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCR 161 (488)
Q Consensus 82 li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~ 161 (488)
.++++.|++
T Consensus 82 -----------------------------------------------------------------------~~~v~~Ll~ 90 (172)
T 3v30_A 82 -----------------------------------------------------------------------TDIVGLLLE 90 (172)
T ss_dssp -----------------------------------------------------------------------HHHHHHHHT
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 133444444
Q ss_pred hhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccc
Q 011338 162 EISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVAT 241 (488)
Q Consensus 162 ~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~ 241 (488)
.+...+. +|..|.||||+|+..|+.+++++|++.+++. ..+|.+|+||||+|+.+|+.+++++|++.+.+ +.
T Consensus 91 ~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~----~~ 162 (172)
T 3v30_A 91 RDVDINI---YDWNGGTPLLYAVRGNHVKCVEALLARGADL-TTEADSGYTPMDLAVALGYRKVQQVIENHILK----LF 162 (172)
T ss_dssp TTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH----HS
T ss_pred cCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHhCcHHHHHHHHHHHHH----Hh
Confidence 4444433 5778999999999999999999999998875 45699999999999999999999999999765 57
Q ss_pred cccCCCCcH
Q 011338 242 NWDKAHNNI 250 (488)
Q Consensus 242 ~~D~~G~Tp 250 (488)
.++..|.||
T Consensus 163 ~~~~~~~~p 171 (172)
T 3v30_A 163 QSNLVPADP 171 (172)
T ss_dssp CC-------
T ss_pred cccCCCCCC
Confidence 788888887
No 65
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.89 E-value=2.3e-23 Score=183.86 Aligned_cols=143 Identities=16% Similarity=0.107 Sum_probs=119.2
Q ss_pred CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338 1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK 80 (488)
Q Consensus 1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~ 80 (488)
++++|++++.+.+. +|.+|+||||+|+. |+.+++++|++.+ ..++.+|.+|.||||+|+..|+
T Consensus 20 ~v~~Ll~~~~~~~~---~~~~g~t~L~~A~~-~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~------------ 82 (162)
T 1ihb_A 20 QLTSLLQNNVNVNA---QNGFGRTALQVMKL-GNPEIARRLLLRG-ANPDLKDRTGFAVIHDAARAGF------------ 82 (162)
T ss_dssp HHHHHTTSCCCTTC---CCTTSCCHHHHCCS-SCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTC------------
T ss_pred HHHHHHhCCCCccc---cCccCccHHHHHHc-CcHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCC------------
Confidence 36788887765543 78899999999999 9999999999984 4578899999999999999882
Q ss_pred HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHh
Q 011338 81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVC 160 (488)
Q Consensus 81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~ 160 (488)
.++++.|+
T Consensus 83 ------------------------------------------------------------------------~~~v~~Ll 90 (162)
T 1ihb_A 83 ------------------------------------------------------------------------LDTLQTLL 90 (162)
T ss_dssp ------------------------------------------------------------------------HHHHHHHH
T ss_pred ------------------------------------------------------------------------HHHHHHHH
Confidence 23444444
Q ss_pred hhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCc
Q 011338 161 REISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAK 235 (488)
Q Consensus 161 ~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~ 235 (488)
+.+.+.+. +|.+|.||||+|++.|+.+++++|++.+++.....|..|+||||+|+.+|+.+++++|+++|++
T Consensus 91 ~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 91 EFQADVNI---EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp HTTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred HcCCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 44444333 5778999999999999999999999999986677899999999999999999999999999863
No 66
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.89 E-value=2e-23 Score=198.68 Aligned_cols=195 Identities=13% Similarity=0.028 Sum_probs=139.0
Q ss_pred ccccccCccccCC-CCCCCCchhHHHHHHHc---CCccHHHHHHHhCccccc----------cccCCCChHHHHHhhCCC
Q 011338 3 RYLYRETPIAELD-PDKGTNGAMLLTSCIID---DIFDIPLDLLQRYRKLAY----------AQDNDGDTAIDMLAQKPS 68 (488)
Q Consensus 3 ~~L~~~~~~~~l~-~~~d~~G~T~LH~A~~~---g~~div~~LL~~~~~~~~----------~~d~~G~TpLh~Aa~~g~ 68 (488)
++|++.+.+.... ..+|.+|+||||+|+.. |+.+++++|++.+.+... .+|.+|+||||+|+..|
T Consensus 23 ~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g- 101 (256)
T 2etb_A 23 EYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKR- 101 (256)
T ss_dssp HHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTT-
T ss_pred HHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcC-
Confidence 4455555433210 02688999999999999 999999999998654321 23477999999999999
Q ss_pred CCCCCchhhHHHHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHh
Q 011338 69 AFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLA 148 (488)
Q Consensus 69 ~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 148 (488)
..++++.|+....+++..+... .........+..|.||||.|+..++.++++.|++.+.
T Consensus 102 ------~~~~v~~Ll~~ga~~~~~~~~~---~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~------------ 160 (256)
T 2etb_A 102 ------SLQCVKLLVENGADVHLRACGR---FFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH------------ 160 (256)
T ss_dssp ------CHHHHHHHHHTTCCTTCCCCSG---GGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS------------
T ss_pred ------CHHHHHHHHHcCCCCCcccccc---cccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc------------
Confidence 4678888876654332111000 0000000112248999999998888877777766210
Q ss_pred hHhHHHHHHHHhhhhcccCchhhhhcCcchHHHHHHH--cCcHH-------HHHHHHHhCCCce------eeccCCCccH
Q 011338 149 HVQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVK--HGIVE-------FITEIMKHYPDII------WCYDDYNRHI 213 (488)
Q Consensus 149 h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~--~G~~~-------~v~~Ll~~~~~~~------~~~d~~g~t~ 213 (488)
.+.+.+. +|.+|+||||+|+. .|+.+ ++++|++.+++.. +.+|.+|+||
T Consensus 161 -------------~ga~~n~---~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tp 224 (256)
T 2etb_A 161 -------------QPASLEA---TDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTP 224 (256)
T ss_dssp -------------CCCCTTC---CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCH
T ss_pred -------------cCCCcCc---cCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCH
Confidence 2222222 67789999999999 88988 9999999987752 5679999999
Q ss_pred HHHHHhcCChhHHHHHHhcCCc
Q 011338 214 FSYATLQRQEKIFNLIYTMGAK 235 (488)
Q Consensus 214 Lh~A~~~~~~~iv~~Ll~~~~~ 235 (488)
||+|+.+|+.+++++|+++|..
T Consensus 225 L~~A~~~g~~~~v~~Ll~~g~~ 246 (256)
T 2etb_A 225 LKLAAKEGKIEIFRHILQREFS 246 (256)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhCCCC
Confidence 9999999999999999998753
No 67
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.88 E-value=1.8e-23 Score=201.93 Aligned_cols=178 Identities=8% Similarity=-0.011 Sum_probs=142.7
Q ss_pred chhHHHHHHHcCCccHHHHHHHhCcc-ccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCC
Q 011338 22 GAMLLTSCIIDDIFDIPLDLLQRYRK-LAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISH 100 (488)
Q Consensus 22 G~T~LH~A~~~g~~div~~LL~~~~~-~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~ 100 (488)
+.+++|.|+..|+.+.++.+++...+ .++.+|.+|+||||+||..|+
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~-------------------------------- 123 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHAN-------------------------------- 123 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTC--------------------------------
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCC--------------------------------
Confidence 56788999999999999999877433 478899999999999999882
Q ss_pred CCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhc-ccCchhhhhcCcchH
Q 011338 101 GDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREIS-TQGESQFEKVGIKKV 179 (488)
Q Consensus 101 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~-~~~~~~~~~~~g~tp 179 (488)
.++++.|++.+. ..+. ++..|.||
T Consensus 124 ----------------------------------------------------~~~v~~Ll~~g~~~~~~---~~~~g~tp 148 (276)
T 4hbd_A 124 ----------------------------------------------------FPVVQQLLDSGVCKVDK---QNRAGYSP 148 (276)
T ss_dssp ----------------------------------------------------HHHHHHHHHTSCCCTTC---CCTTSCCH
T ss_pred ----------------------------------------------------HHHHHHHHHCCCCcCCC---CCCCCCCH
Confidence 133444444443 2222 57789999
Q ss_pred HHHHH-----HcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHH
Q 011338 180 VFIAV-----KHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQA 254 (488)
Q Consensus 180 Lh~Aa-----~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA 254 (488)
||+|+ ..|+.++++.|++.+... ...|..|+||||+|+.+|+.+++++|++.|++ +|.+|.+|+||||+|
T Consensus 149 L~~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad----~n~~d~~G~TpLh~A 223 (276)
T 4hbd_A 149 IMLTALATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEAD----VNVQDDDGSTALMCA 223 (276)
T ss_dssp HHHGGGCCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHH
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC----CCCCCCCCCCHHHHH
Confidence 99999 779999999999998664 45688999999999999999999999999987 799999999999999
Q ss_pred HHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhHH
Q 011338 255 AFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQ 309 (488)
Q Consensus 255 ~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~~ 309 (488)
+..|+.++++.+.. ..+.+.+.+|++|+||++++.+.
T Consensus 224 ~~~g~~~iv~~Ll~------------------~~gad~~~~d~~g~TpL~~A~~~ 260 (276)
T 4hbd_A 224 CEHGHKEIAGLLLA------------------VPSCDISLTDRDGSTALMVALDA 260 (276)
T ss_dssp HHHTCHHHHHHHHT------------------STTCCTTCCCTTSCCHHHHHHHH
T ss_pred HHCCCHHHHHHHHh------------------cCCCCCcCcCCCCCCHHHHHHHc
Confidence 99998665532210 02345678899999999998764
No 68
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.88 E-value=1.6e-23 Score=197.82 Aligned_cols=154 Identities=8% Similarity=-0.032 Sum_probs=99.8
Q ss_pred CCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCC
Q 011338 19 GTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNI 98 (488)
Q Consensus 19 d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~ 98 (488)
+..|.||||.|++.|+.++++.||+++.+ ++. +..|.||||.|+..|+
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~-~~~-~~~~~t~L~~A~~~g~------------------------------ 49 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMR-VKF-NPLPLALLLDSSLEGE------------------------------ 49 (239)
T ss_dssp -------------------------------------CHHHHHHHHHHTC------------------------------
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCC-ccc-CchhhHHHHHHHHcCC------------------------------
Confidence 34699999999999999999999998554 443 4678999999999882
Q ss_pred CCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcch
Q 011338 99 SHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKK 178 (488)
Q Consensus 99 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~t 178 (488)
.++++.|++.+.+.+. +|..|+|
T Consensus 50 ------------------------------------------------------~~~v~~Ll~~g~~~~~---~d~~g~t 72 (239)
T 1ycs_B 50 ------------------------------------------------------FDLVQRIIYEVDDPSL---PNDEGIT 72 (239)
T ss_dssp ------------------------------------------------------HHHHHHHTSTTSSCCC---CCTTSCC
T ss_pred ------------------------------------------------------HHHHHHHHHcCCCCCC---cCCCCCC
Confidence 2344555555544433 5778999
Q ss_pred HHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCC-cHHHHH--H
Q 011338 179 VVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHN-NILHQA--A 255 (488)
Q Consensus 179 pLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~-TpLhlA--~ 255 (488)
|||+||..|+.+++++|++.+++. +.+|.+|+||||+|+.+|+.+++++|++.|++ ++.+|.+|. ||||+| +
T Consensus 73 ~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~~~~t~l~~a~~~ 147 (239)
T 1ycs_B 73 ALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAA----VFAMTYSDMQTAADKCEEM 147 (239)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCSSSCCCHHHHCCSS
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----cceecCCCCcchHHHHHHh
Confidence 999999999999999999998875 45699999999999999999999999999887 788888877 999999 7
Q ss_pred HhCCCCCcccc
Q 011338 256 FLAPSSQLDRV 266 (488)
Q Consensus 256 ~~~~~~~v~~l 266 (488)
..|+.++++.|
T Consensus 148 ~~g~~~~~~~L 158 (239)
T 1ycs_B 148 EEGYTQCSQFL 158 (239)
T ss_dssp STTCCCHHHHH
T ss_pred hhccHHHHHHH
Confidence 78888877654
No 69
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.88 E-value=3.7e-23 Score=181.85 Aligned_cols=144 Identities=10% Similarity=0.047 Sum_probs=106.1
Q ss_pred CCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccC
Q 011338 17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASN 96 (488)
Q Consensus 17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~ 96 (488)
..+..|.||||+|+..|+.+++++|++.+ ..++.+|..|+||||+|+ .|+
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~-~~~---------------------------- 56 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEAG-ANPNAPNSYGRRPIQVMM-MGS---------------------------- 56 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTTT-CCTTCCCSSSCCTTTSSC-TTC----------------------------
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHH-cCC----------------------------
Confidence 36788999999999999999999999984 558899999999999985 551
Q ss_pred CCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCc
Q 011338 97 NISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGI 176 (488)
Q Consensus 97 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g 176 (488)
.++++.|++.+.+.+. +|..|
T Consensus 57 --------------------------------------------------------~~~v~~Ll~~g~~~~~---~d~~g 77 (156)
T 1bi7_B 57 --------------------------------------------------------ARVAELLLLHGAEPNC---ADPAT 77 (156)
T ss_dssp --------------------------------------------------------HHHHHHHHTTTCCCCC---CCTTT
T ss_pred --------------------------------------------------------HHHHHHHHHcCCCCCC---cCCCC
Confidence 2345555555544443 67789
Q ss_pred ch-HHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHH
Q 011338 177 KK-VVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQA 254 (488)
Q Consensus 177 ~t-pLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA 254 (488)
.| |||+|+..|+.+++++|++++++. +.+|..|+||||+|+.+|+.+++++|++.|++ ++.+|..|+||.+-+
T Consensus 78 ~ttpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 78 LTRPVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGG----TRGSNHARIDAAEGP 151 (156)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------------
T ss_pred CcHHHHHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC----CCccCcCcCcccccC
Confidence 98 999999999999999999998875 45699999999999999999999999999987 799999999998844
No 70
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.88 E-value=3.4e-23 Score=197.50 Aligned_cols=181 Identities=10% Similarity=-0.033 Sum_probs=133.9
Q ss_pred CCCCchhHHHHHH---HcCCccHHHHHHHhCcc----------ccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhh
Q 011338 18 KGTNGAMLLTSCI---IDDIFDIPLDLLQRYRK----------LAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIY 84 (488)
Q Consensus 18 ~d~~G~T~LH~A~---~~g~~div~~LL~~~~~----------~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~ 84 (488)
+|.+|.||||+|+ ..|+.+++++|++.+.+ ..+..|.+|+||||+||..| +.++++.|+.
T Consensus 42 ~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g-------~~~~v~~Ll~ 114 (260)
T 3jxi_A 42 EPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERR-------CKHYVELLVE 114 (260)
T ss_dssp CTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTT-------CHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcC-------CHHHHHHHHh
Confidence 4578999999999 77999999999998542 23445668999999999999 5778888887
Q ss_pred hhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhc
Q 011338 85 SFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREIS 164 (488)
Q Consensus 85 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~ 164 (488)
...+++..+..... ...+.......|.||||.|+..++.++++.|++.+. .+.
T Consensus 115 ~ga~~~~~~~~~~~--~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-------------------------~ga 167 (260)
T 3jxi_A 115 KGADVHAQARGRFF--QPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH-------------------------KQA 167 (260)
T ss_dssp TTCCTTCCCEECCC--SSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSS-------------------------CCC
T ss_pred CCCCcCcccccccc--CcccccccccCCCCHHHHHHHcCCHHHHHHHHhccc-------------------------cCC
Confidence 65544321110000 000011122579999999999888877777766210 122
Q ss_pred ccCchhhhhcCcchHHHHHHHcCc---------HHHHHHHHHhCCCce------eeccCCCccHHHHHHhcCChhHHHHH
Q 011338 165 TQGESQFEKVGIKKVVFIAVKHGI---------VEFITEIMKHYPDII------WCYDDYNRHIFSYATLQRQEKIFNLI 229 (488)
Q Consensus 165 ~~~~~~~~~~~g~tpLh~Aa~~G~---------~~~v~~Ll~~~~~~~------~~~d~~g~t~Lh~A~~~~~~~iv~~L 229 (488)
+.+. +|..|+||||+|++.|+ .++++.|++.+++.. ..+|.+|+||||+|+.+|+.+++++|
T Consensus 168 ~~~~---~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L 244 (260)
T 3jxi_A 168 DLRR---QDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244 (260)
T ss_dssp CTTC---CCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCcc---cCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHH
Confidence 2222 67789999999999888 799999999987652 45799999999999999999999999
Q ss_pred HhcCCc
Q 011338 230 YTMGAK 235 (488)
Q Consensus 230 l~~~~~ 235 (488)
+++|..
T Consensus 245 l~~g~~ 250 (260)
T 3jxi_A 245 IRREIA 250 (260)
T ss_dssp HHHHHH
T ss_pred HHhCCC
Confidence 998754
No 71
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.87 E-value=2e-22 Score=172.79 Aligned_cols=128 Identities=13% Similarity=0.092 Sum_probs=108.8
Q ss_pred CCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccC
Q 011338 17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASN 96 (488)
Q Consensus 17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~ 96 (488)
.+|.+|.||||+|+..|+.+++++|++.+ ..++.+|.+|+||||+|+. |+
T Consensus 7 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~-~~---------------------------- 56 (136)
T 1d9s_A 7 MLGGSSDAGLATAAARGQVETVRQLLEAG-ADPNALNRFGRRPIQVMMM-GS---------------------------- 56 (136)
T ss_dssp CCCCCCSCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCTTTTTSTT-SC----------------------------
T ss_pred CCCCCCccHHHHHHHcCCHHHHHHHHHcC-CCcCCcCCCCCCHHHHHHc-CC----------------------------
Confidence 37889999999999999999999999984 5578999999999999999 82
Q ss_pred CCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcC-
Q 011338 97 NISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVG- 175 (488)
Q Consensus 97 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~- 175 (488)
.++++.|++.+.+.+. +|..
T Consensus 57 --------------------------------------------------------~~~v~~Ll~~g~~~~~---~~~~~ 77 (136)
T 1d9s_A 57 --------------------------------------------------------AQVAELLLLHGAEPNC---ADPAT 77 (136)
T ss_dssp --------------------------------------------------------HHHHHHHHHHTCCSSC---CBTTT
T ss_pred --------------------------------------------------------HHHHHHHHHCCCCCCC---cCCCC
Confidence 2344445555444443 5677
Q ss_pred cchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCC
Q 011338 176 IKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGA 234 (488)
Q Consensus 176 g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~ 234 (488)
|.||||+|+..|+.+++++|++.+++. ..+|..|+||||+|+.+++.+++++|++.|+
T Consensus 78 g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 78 LTRPVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp TBCHHHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 899999999999999999999998875 4669999999999999999999999999875
No 72
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.87 E-value=2.8e-23 Score=188.45 Aligned_cols=152 Identities=10% Similarity=0.022 Sum_probs=126.3
Q ss_pred chhHHHHHHHcCCccHHHHHHHhCcccccccc-CCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCC
Q 011338 22 GAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQD-NDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISH 100 (488)
Q Consensus 22 G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d-~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~ 100 (488)
+.++||.|++.|+.+.++.+++.++ +.+| ..|+||||+|+..|+.
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~---~~~~~~~g~T~Lh~A~~~~~~------------------------------- 51 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGY---EDKESVLKSNILYDVLRNNND------------------------------- 51 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSS---SCHHHHHTTTHHHHHTTCSCH-------------------------------
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCc---ccccccCCCCHHHHHHHcCCc-------------------------------
Confidence 5689999999999999999998754 3445 7899999999998820
Q ss_pred CCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHH
Q 011338 101 GDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVV 180 (488)
Q Consensus 101 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpL 180 (488)
....++++.|++.+.+++. +|.+|+|||
T Consensus 52 -------------------------------------------------~~~~~iv~~Ll~~Gadvn~---~d~~g~TpL 79 (186)
T 3t8k_A 52 -------------------------------------------------EARYKISMFLINKGADIKS---RTKEGTTLF 79 (186)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHTTCCSSC---CCTTCCCTH
T ss_pred -------------------------------------------------chHHHHHHHHHHCCCCCCC---CCCCCCcHH
Confidence 0123567777777777665 678899999
Q ss_pred HHHHHcCc------HHHHHHHHHhCCCceeeccCCCc-cHHHHHHhcCC-----hhHHHHHHh-cCCccccccccccCCC
Q 011338 181 FIAVKHGI------VEFITEIMKHYPDIIWCYDDYNR-HIFSYATLQRQ-----EKIFNLIYT-MGAKKNSVATNWDKAH 247 (488)
Q Consensus 181 h~Aa~~G~------~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~~~~-----~~iv~~Ll~-~~~~~~~~~~~~D~~G 247 (488)
|+|+..|+ .+++++|++++.+. +.+|..|+ ||||+|+..+. .+++++|++ .|++ ++.+|.+|
T Consensus 80 h~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad----~~~~d~~G 154 (186)
T 3t8k_A 80 FPLFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ----LLIKDKWG 154 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC----TTCCCTTS
T ss_pred HHHHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC----CcccCCCC
Confidence 99999997 68999999999885 45699999 99999999554 469999999 8887 79999999
Q ss_pred CcHHHHHHHhCCCCCcc
Q 011338 248 NNILHQAAFLAPSSQLD 264 (488)
Q Consensus 248 ~TpLhlA~~~~~~~~v~ 264 (488)
+||||+|++.|+.++++
T Consensus 155 ~TpL~~A~~~~~~~~v~ 171 (186)
T 3t8k_A 155 LTALEFVKRCQKPIALK 171 (186)
T ss_dssp CCHHHHHHTTTCHHHHH
T ss_pred CCHHHHHHHcCCHHHHH
Confidence 99999999999876654
No 73
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.87 E-value=3.3e-22 Score=178.11 Aligned_cols=141 Identities=16% Similarity=0.196 Sum_probs=117.7
Q ss_pred CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338 1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK 80 (488)
Q Consensus 1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~ 80 (488)
+|++|++++.+.+. +|.+|.||||+|+..|+.+++++|++.+ ..++.+|.+|.||||+|+..|+
T Consensus 29 ~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~------------ 92 (169)
T 2y1l_E 29 EVRILMANGADVNA---EDASGWTPLHLAAFNGHLEIVEVLLKNG-ADVNAVDHAGMTPLRLAALFGH------------ 92 (169)
T ss_dssp HHHHHHHTTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTC------------
T ss_pred HHHHHHHCCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCC------------
Confidence 46889988876554 7889999999999999999999999985 4578899999999999999982
Q ss_pred HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHh
Q 011338 81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVC 160 (488)
Q Consensus 81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~ 160 (488)
.++++.|+
T Consensus 93 ------------------------------------------------------------------------~~~~~~Ll 100 (169)
T 2y1l_E 93 ------------------------------------------------------------------------LEIVEVLL 100 (169)
T ss_dssp ------------------------------------------------------------------------HHHHHHHH
T ss_pred ------------------------------------------------------------------------HHHHHHHH
Confidence 13344444
Q ss_pred hhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcC
Q 011338 161 REISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMG 233 (488)
Q Consensus 161 ~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~ 233 (488)
+.+.+.+. +|..|.||||+|+..|+.+++++|++++.+. ..+|..|+||||+|+.+|+.+++++|++.|
T Consensus 101 ~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 101 KNGADVNA---NDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp HTTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred HcCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 44444433 5778999999999999999999999998875 456999999999999999999999999864
No 74
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.86 E-value=1.3e-22 Score=191.40 Aligned_cols=165 Identities=9% Similarity=0.001 Sum_probs=122.1
Q ss_pred cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338 2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK 81 (488)
Q Consensus 2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~ 81 (488)
++.|++++.+... +..|.||||.|+..|+.+++++|++.++ +++.+|.+|+||||+||..|+
T Consensus 21 ~~~ll~~g~~~~~----~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~t~L~~A~~~g~------------- 82 (239)
T 1ycs_B 21 GSERIAHGMRVKF----NPLPLALLLDSSLEGEFDLVQRIIYEVD-DPSLPNDEGITALHNAVCAGH------------- 82 (239)
T ss_dssp --------------------CHHHHHHHHHHTCHHHHHHHTSTTS-SCCCCCTTSCCHHHHHHHHTC-------------
T ss_pred HHHHhccCCCccc----CchhhHHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHHcCC-------------
Confidence 6778888876654 5788999999999999999999998865 689999999999999999882
Q ss_pred HhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhh
Q 011338 82 WIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCR 161 (488)
Q Consensus 82 li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~ 161 (488)
.++++.|++
T Consensus 83 -----------------------------------------------------------------------~~~v~~Ll~ 91 (239)
T 1ycs_B 83 -----------------------------------------------------------------------TEIVKFLVQ 91 (239)
T ss_dssp -----------------------------------------------------------------------HHHHHHHHH
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 234445555
Q ss_pred hhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCc-cHHHHH--HhcCChhHHHHHHhcCCcccc
Q 011338 162 EISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNR-HIFSYA--TLQRQEKIFNLIYTMGAKKNS 238 (488)
Q Consensus 162 ~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A--~~~~~~~iv~~Ll~~~~~~~~ 238 (488)
.+.+.+. +|.+|+||||+|+..|+.+++++|++++++.... |..|. ||||+| +.+|+.+++++|++.+++...
T Consensus 92 ~ga~~~~---~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~ 167 (239)
T 1ycs_B 92 FGVNVNA---ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM-TYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGI 167 (239)
T ss_dssp HTCCTTC---CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTT
T ss_pred cCCCCCc---cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccee-cCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccc
Confidence 5544443 6778999999999999999999999999886544 65555 999999 889999999999998765211
Q ss_pred -----ccccccCCCCcHHHHHHHhCC
Q 011338 239 -----VATNWDKAHNNILHQAAFLAP 259 (488)
Q Consensus 239 -----~~~~~D~~G~TpLhlA~~~~~ 259 (488)
.....|..|.||++++...|.
T Consensus 168 ~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 168 MNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp TGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred cccceEEEEeccCCCCCCcccccCCC
Confidence 122338889999999998886
No 75
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.85 E-value=9.1e-22 Score=178.89 Aligned_cols=141 Identities=14% Similarity=0.114 Sum_probs=117.7
Q ss_pred CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338 1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK 80 (488)
Q Consensus 1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~ 80 (488)
++++|++.+.+... +|.+|+||||+|+..|+.+++++|++.+. .++.+|.+|.||||+|+..|+
T Consensus 50 ~v~~Ll~~~~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~------------ 113 (192)
T 2rfm_A 50 AIDKLVENFDKLED---KDIEGSTALIWAVKNNRLGIAEKLLSKGS-NVNTKDFSGKTPLMWSIIFGY------------ 113 (192)
T ss_dssp GHHHHHHHHCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHHTC-CTTCCCTTSCCHHHHHHHHTC------------
T ss_pred HHHHHHHhcccccc---ccccCccHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCcHHHHHHHcCC------------
Confidence 46788887765443 78899999999999999999999999954 578899999999999998882
Q ss_pred HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHh
Q 011338 81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVC 160 (488)
Q Consensus 81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~ 160 (488)
.++++.|+
T Consensus 114 ------------------------------------------------------------------------~~~v~~Ll 121 (192)
T 2rfm_A 114 ------------------------------------------------------------------------SEMSYFLL 121 (192)
T ss_dssp ------------------------------------------------------------------------HHHHHHHH
T ss_pred ------------------------------------------------------------------------HHHHHHHH
Confidence 23444445
Q ss_pred hhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcC
Q 011338 161 REISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMG 233 (488)
Q Consensus 161 ~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~ 233 (488)
+.+.+.+. +|..|.||||+|+..|+.+++++|++.+++. ..+|..|+||||+|+.+|+.+++++|++.+
T Consensus 122 ~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 122 EHGANVND---RNLEGETPLIVASKYGRSEIVKKLLELGADI-SARDLTGLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp HTTCCSSC---CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred HCCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence 54444443 6778999999999999999999999998875 456999999999999999999999999864
No 76
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.85 E-value=1.1e-21 Score=171.57 Aligned_cols=135 Identities=14% Similarity=0.118 Sum_probs=112.4
Q ss_pred cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338 2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK 81 (488)
Q Consensus 2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~ 81 (488)
+++|++++++.. .|..|.||||+|+..|+.+++++|++.+. .++.+|.+|+||||+|+..|+
T Consensus 18 v~~Ll~~g~~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~------------- 79 (153)
T 1awc_B 18 VRILMANGAPFT----TDWLGTSPLHLAAQYGHFSTTEVLLRAGV-SRDARTKVDRTPLHMAASEGH------------- 79 (153)
T ss_dssp HHHHHHHTCCCC----CCTTCCCHHHHHHHHTCHHHHHHHHTTTC-CTTCCCTTCCCHHHHHHHHTC-------------
T ss_pred HHHHHHcCCCCC----cCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHcCh-------------
Confidence 678888876432 58899999999999999999999999854 578899999999999998882
Q ss_pred HhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhh
Q 011338 82 WIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCR 161 (488)
Q Consensus 82 li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~ 161 (488)
.++++.|++
T Consensus 80 -----------------------------------------------------------------------~~~v~~Ll~ 88 (153)
T 1awc_B 80 -----------------------------------------------------------------------ANIVEVLLK 88 (153)
T ss_dssp -----------------------------------------------------------------------HHHHHHHHT
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 134444444
Q ss_pred hhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHH
Q 011338 162 EISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLI 229 (488)
Q Consensus 162 ~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~L 229 (488)
.+.+.+. +|..|.||||+|+..|+.+++++|++.+++. ..+|..|+||||+|+.+|+.+++++|
T Consensus 89 ~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 89 HGADVNA---KDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp TTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 4444433 5778999999999999999999999998875 45699999999999999999999987
No 77
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.85 E-value=1.1e-22 Score=204.53 Aligned_cols=158 Identities=11% Similarity=-0.050 Sum_probs=109.2
Q ss_pred CCCCchhHHHHHHHcCCccHHHHHHHhCcc--ccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhcccc
Q 011338 18 KGTNGAMLLTSCIIDDIFDIPLDLLQRYRK--LAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYAS 95 (488)
Q Consensus 18 ~d~~G~T~LH~A~~~g~~div~~LL~~~~~--~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~ 95 (488)
++.+++||||+|++.|+.+++++|++.+.. ..+..|..|.||||+||+.| +.++++.|+....+.....
T Consensus 88 ~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G-------~~eiv~~Ll~~gad~~~~~-- 158 (376)
T 2aja_A 88 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENG-------HLHVLNRLCELAPTEIMAM-- 158 (376)
T ss_dssp HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTT-------CHHHHHHHHHSCTTTHHHH--
T ss_pred cCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcC-------CHHHHHHHHhCCCCccccc--
Confidence 456788999999999999999999998642 12245567899999999999 5778888876542110000
Q ss_pred CCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcC
Q 011338 96 NNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVG 175 (488)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~ 175 (488)
......||||.|+..|+.++++.|++.+..... ...|.+
T Consensus 159 ------------i~~~~~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~-----------------------------~~~d~~ 197 (376)
T 2aja_A 159 ------------IQAENYHAFRLAAENGHLHVLNRLCELAPTEAT-----------------------------AMIQAE 197 (376)
T ss_dssp ------------HSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHH-----------------------------HHHHHH
T ss_pred ------------cCCCCCCHHHHHHHCCCHHHHHHHHHcCCccch-----------------------------hccCCC
Confidence 011128999999999999999988887632110 013344
Q ss_pred cchHHHHHH-HcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcC
Q 011338 176 IKKVVFIAV-KHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMG 233 (488)
Q Consensus 176 g~tpLh~Aa-~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~ 233 (488)
|.||||+|| ..|+.+++++|++.+. .|+||||+|+.+|+.+++++|++.|
T Consensus 198 g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~~g 248 (376)
T 2aja_A 198 NYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFIARHV 248 (376)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHHHhcC
Confidence 677777777 7777777777776431 2677777777777777777777654
No 78
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.85 E-value=1.7e-21 Score=172.92 Aligned_cols=141 Identities=11% Similarity=0.010 Sum_probs=117.2
Q ss_pred cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338 2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK 81 (488)
Q Consensus 2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~ 81 (488)
+++|++.+.+.+ .+|.+|.||||+|+..|+.+++++|++.+ ..++.+|..|.||||+|+..|+
T Consensus 19 v~~ll~~~~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~------------- 81 (167)
T 3v31_A 19 LATRIEQENVIN---HTDEEGFTPLMWAAAHGQIAVVEFLLQNG-ADPQLLGKGRESALSLACSKGY------------- 81 (167)
T ss_dssp HHHHHHHSSCTT---CCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHHTC-------------
T ss_pred HHHHHHcCCCcC---CCCCCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHcCC-------------
Confidence 677887776543 37889999999999999999999999984 5578899999999999999882
Q ss_pred HhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhh
Q 011338 82 WIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCR 161 (488)
Q Consensus 82 li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~ 161 (488)
.++++.|++
T Consensus 82 -----------------------------------------------------------------------~~~v~~Ll~ 90 (167)
T 3v31_A 82 -----------------------------------------------------------------------TDIVKMLLD 90 (167)
T ss_dssp -----------------------------------------------------------------------HHHHHHHHH
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 133444444
Q ss_pred hhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCC
Q 011338 162 EISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGA 234 (488)
Q Consensus 162 ~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~ 234 (488)
.+.+.+. +|..|.||||+|+..|+.+++++|++.+++. ..+|..|+||||+|+..|+.+++++|++++.
T Consensus 91 ~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~ 159 (167)
T 3v31_A 91 CGVDVNE---YDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGYRSVQQVIESHLL 159 (167)
T ss_dssp HTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCCCc---CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHHHH
Confidence 4444433 5778999999999999999999999998875 4569999999999999999999999998854
No 79
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.85 E-value=3.2e-21 Score=165.33 Aligned_cols=127 Identities=14% Similarity=0.118 Sum_probs=104.2
Q ss_pred CCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCC
Q 011338 18 KGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNN 97 (488)
Q Consensus 18 ~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~ 97 (488)
....|.||||+|+..|+.+++++|++.+ ..++.+|.+|+||||+|+..|+
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~----------------------------- 59 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANG-ADVNAKDEYGLTPLYLATAHGH----------------------------- 59 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTC-----------------------------
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCC-----------------------------
Confidence 5678999999999999999999999985 4578899999999999998872
Q ss_pred CCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcc
Q 011338 98 ISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIK 177 (488)
Q Consensus 98 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~ 177 (488)
.++++.|++.+.+.+. +|..|.
T Consensus 60 -------------------------------------------------------~~~v~~Ll~~g~~~~~---~d~~g~ 81 (136)
T 2jab_A 60 -------------------------------------------------------LEIVEVLLKNGADVNA---VDAIGF 81 (136)
T ss_dssp -------------------------------------------------------HHHHHHHHHTTCCTTC---CCTTCC
T ss_pred -------------------------------------------------------HHHHHHHHHcCCCCCc---CCCCCC
Confidence 2344444454444433 567899
Q ss_pred hHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcC
Q 011338 178 KVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMG 233 (488)
Q Consensus 178 tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~ 233 (488)
||||+|+..|+.+++++|++.+++. ...|.+|+||||+|+.+|+.+++++|++.|
T Consensus 82 t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 82 TPLHLAAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 9999999999999999999998775 456899999999999999999999998864
No 80
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.85 E-value=1.1e-21 Score=176.30 Aligned_cols=151 Identities=12% Similarity=0.046 Sum_probs=122.9
Q ss_pred cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338 2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK 81 (488)
Q Consensus 2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~ 81 (488)
|++|++..+.. + ..+|.+|.||||+|+..|+.+++++|++.+ ..++.+|.+|+||||+|+..|+
T Consensus 21 v~~ll~~~~~~-~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~------------- 84 (179)
T 3f6q_A 21 VRLWLDNTEND-L-NQGDDHGFSPLHWACREGRSAVVEMLIMRG-ARINVMNRGDDTPLHLAASHGH------------- 84 (179)
T ss_dssp HHHHHHCTTSC-T-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTC-------------
T ss_pred HHHHHhcCccc-c-cccCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCC-------------
Confidence 56777765432 2 247889999999999999999999999985 5578899999999999999982
Q ss_pred HhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhh
Q 011338 82 WIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCR 161 (488)
Q Consensus 82 li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~ 161 (488)
.++++.|++
T Consensus 85 -----------------------------------------------------------------------~~~v~~Ll~ 93 (179)
T 3f6q_A 85 -----------------------------------------------------------------------RDIVQKLLQ 93 (179)
T ss_dssp -----------------------------------------------------------------------HHHHHHHHH
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 234444455
Q ss_pred hhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccc
Q 011338 162 EISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVAT 241 (488)
Q Consensus 162 ~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~ 241 (488)
.+.+.+. +|..|.||||+|+..|+.+++++|++.+.+. ..+|..|+||||+|+..++.+++++|++.|++ ++
T Consensus 94 ~g~~~~~---~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~----~~ 165 (179)
T 3f6q_A 94 YKADINA---VNEHGNVPLHYACFWGQDQVAEDLVANGALV-SICNKYGEMPVDKAKAPLRELLRERAEKMGQN----LN 165 (179)
T ss_dssp TTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-SBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCC----CS
T ss_pred cCCCCCc---cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-chhccCCCCcHHHHHHHHHHHHHHHHHHhhcC----cc
Confidence 4444433 5778999999999999999999999998875 46699999999999999999999999999876 45
Q ss_pred cccCCC
Q 011338 242 NWDKAH 247 (488)
Q Consensus 242 ~~D~~G 247 (488)
..+.++
T Consensus 166 ~~~~~~ 171 (179)
T 3f6q_A 166 RIPYKD 171 (179)
T ss_dssp CBCCCC
T ss_pred cCCccc
Confidence 555444
No 81
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.84 E-value=2.3e-21 Score=169.91 Aligned_cols=138 Identities=14% Similarity=0.145 Sum_probs=112.3
Q ss_pred cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338 2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK 81 (488)
Q Consensus 2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~ 81 (488)
+++|+++ ...+. ..+|.+|.||||+ +..|+.+++++|++.+ ..++.+|.+|.||||+|+..|+
T Consensus 18 v~~ll~~-~~~~~-~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~------------- 80 (156)
T 1bd8_A 18 VRRLLHR-ELVHP-DALNRFGKTALQV-MMFGSTAIALELLKQG-ASPNVQDTSGTSPVHDAARTGF------------- 80 (156)
T ss_dssp HHHHHHT-TCCCT-TCCCTTSCCHHHH-SCTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTC-------------
T ss_pred HHHHHHh-hCcCc-cccCCCCCcHHHH-HHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCc-------------
Confidence 5677777 32222 2478899999999 9999999999999984 4578999999999999999982
Q ss_pred HhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhh
Q 011338 82 WIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCR 161 (488)
Q Consensus 82 li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~ 161 (488)
.++++.|++
T Consensus 81 -----------------------------------------------------------------------~~~v~~Ll~ 89 (156)
T 1bd8_A 81 -----------------------------------------------------------------------LDTLKVLVE 89 (156)
T ss_dssp -----------------------------------------------------------------------HHHHHHHHH
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 234444555
Q ss_pred hhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhc
Q 011338 162 EISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTM 232 (488)
Q Consensus 162 ~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~ 232 (488)
.+.+.+. +|.+|.||||+|++.|+.+++++|++. .+ ...+|.+|+||||+|+.+|+.+++++|+++
T Consensus 90 ~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 90 HGADVNV---PDGTGALPIHLAVQEGHTAVVSFLAAE-SD-LHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp TTCCSCC---CCTTSCCHHHHHHHHTCHHHHHHHHTT-SC-TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred cCCCCCC---cCCCCCcHHHHHHHhChHHHHHHHHhc-cC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 5444443 577899999999999999999999998 55 456699999999999999999999999874
No 82
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.84 E-value=2e-21 Score=172.03 Aligned_cols=141 Identities=13% Similarity=0.019 Sum_probs=113.3
Q ss_pred cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338 2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK 81 (488)
Q Consensus 2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~ 81 (488)
+++|++..+.. . ...+..|.||||+|+..|+.+++++|++.+ ..++.+|.+|+||||+|+..|+
T Consensus 24 v~~ll~~~~~~-~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~------------- 87 (165)
T 3twr_A 24 VKKLCTVQSVN-C-RDIEGRQSTPLHFAAGYNRVSVVEYLLQHG-ADVHAKDKGGLVPLHNACSYGH------------- 87 (165)
T ss_dssp HHHHCCTTTTT-C-CCTTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTC-------------
T ss_pred HHHHHHcCCCC-c-cccccCCCCHHHHHHHcChHHHHHHHHhcC-CCCCccCCCCCCHHHHHHHcCc-------------
Confidence 56777765422 2 246788999999999999999999999985 4578999999999999999982
Q ss_pred HhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhh
Q 011338 82 WIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCR 161 (488)
Q Consensus 82 li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~ 161 (488)
.++++.|++
T Consensus 88 -----------------------------------------------------------------------~~~v~~Ll~ 96 (165)
T 3twr_A 88 -----------------------------------------------------------------------YEVAELLVK 96 (165)
T ss_dssp -----------------------------------------------------------------------HHHHHHHHH
T ss_pred -----------------------------------------------------------------------HHHHHHHHh
Confidence 134444445
Q ss_pred hhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCC
Q 011338 162 EISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGA 234 (488)
Q Consensus 162 ~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~ 234 (488)
.+.+.+. +|..|.||||+|+..|+.+++++|++.+.+. ..+|.+|+||||+|+. ++.+++++|++.|+
T Consensus 97 ~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 97 HGAVVNV---ADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp TTCCTTC---CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred CCCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence 4444433 5778999999999999999999999998875 4569999999999877 89999999998764
No 83
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.84 E-value=7.3e-21 Score=159.81 Aligned_cols=126 Identities=17% Similarity=0.218 Sum_probs=105.1
Q ss_pred CchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCC
Q 011338 21 NGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISH 100 (488)
Q Consensus 21 ~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~ 100 (488)
+|+||||.|+..|+.+++++|++.++ .++.+|..|.||||+|+..++
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~~~~~-------------------------------- 47 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNGH-------------------------------- 47 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTC-CTTCCCTTSCCHHHHHHHHTC--------------------------------
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCC-CCCCcCCCCCcHHHHHHHcCc--------------------------------
Confidence 58999999999999999999999854 478889999999999998872
Q ss_pred CCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHH
Q 011338 101 GDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVV 180 (488)
Q Consensus 101 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpL 180 (488)
.++++.+++.+...+. +|..|.|||
T Consensus 48 ----------------------------------------------------~~~~~~Ll~~g~~~~~---~~~~g~t~l 72 (126)
T 1n0r_A 48 ----------------------------------------------------LEVVKLLLEAGADVNA---KDKNGRTPL 72 (126)
T ss_dssp ----------------------------------------------------HHHHHHHHHTTCCTTC---CCTTSCCHH
T ss_pred ----------------------------------------------------HHHHHHHHHcCCCCcc---cCCCCCcHH
Confidence 1334444444433332 567799999
Q ss_pred HHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCc
Q 011338 181 FIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAK 235 (488)
Q Consensus 181 h~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~ 235 (488)
|+|+..|+.+++++|++.+++. ..+|..|+||||+|+..|+.+++++|++.|++
T Consensus 73 ~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 73 HLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHHcChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 9999999999999999998875 45689999999999999999999999998863
No 84
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.84 E-value=1.7e-21 Score=167.04 Aligned_cols=102 Identities=10% Similarity=-0.019 Sum_probs=85.9
Q ss_pred HHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCC-CccHHHHHHhcCChhHHHHHHhc
Q 011338 154 ELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDY-NRHIFSYATLQRQEKIFNLIYTM 232 (488)
Q Consensus 154 ~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~-g~t~Lh~A~~~~~~~iv~~Ll~~ 232 (488)
++++.|++.+.+.+. +|..|+||||+|+. |+.+++++|++.+++.. .+|.. |+||||+|+..|+.+++++|++.
T Consensus 26 ~~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 100 (136)
T 1d9s_A 26 ETVRQLLEAGADPNA---LNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN-CADPATLTRPVHDAAREGFLDTLVVLHRA 100 (136)
T ss_dssp HHHHHHHHTTCCTTC---CCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSS-CCBTTTTBCHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcCC---cCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 344445554444433 57789999999999 99999999999988854 55888 99999999999999999999999
Q ss_pred CCccccccccccCCCCcHHHHHHHhCCCCCcc
Q 011338 233 GAKKNSVATNWDKAHNNILHQAAFLAPSSQLD 264 (488)
Q Consensus 233 ~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~ 264 (488)
|++ ++.+|.+|+||||+|+..++.++++
T Consensus 101 ga~----~~~~d~~g~tpl~~A~~~~~~~~~~ 128 (136)
T 1d9s_A 101 GAR----LDVCDAWGRLPVDLAEEQGHRDIAR 128 (136)
T ss_dssp CCC----CCCCSSSSSCHHHHHHHHTCHHHHH
T ss_pred CCC----CCccCCCCCCHHHHHHHcCCHHHHH
Confidence 876 7999999999999999999876654
No 85
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.83 E-value=8.5e-21 Score=185.40 Aligned_cols=145 Identities=9% Similarity=0.015 Sum_probs=112.7
Q ss_pred CCchhHHHHHHHcCCccHHHHHHHhCcccccc------ccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhcc
Q 011338 20 TNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYA------QDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAY 93 (488)
Q Consensus 20 ~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~------~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~ 93 (488)
..+.++||.|+..|+.+.++.|++.+++ ++. .|.+|+||||+|+..++.
T Consensus 149 ~~~~~~L~~A~~~g~~~~v~~ll~~g~d-~~~~~~~~~~~~~g~t~Lh~A~~~~~~------------------------ 203 (301)
T 2b0o_E 149 TPEPQRLWTAICNRDLLSVLEAFANGQD-FGQPLPGPDAQAPEELVLHLAVKVANQ------------------------ 203 (301)
T ss_dssp C-CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCEECSSSCSCEECHHHHHHHTCCT------------------------
T ss_pred CchHHHHhhhhhccCHHHHHHHHhcCCc-ccccCCCcccCCCCccHHHHHHHhccc------------------------
Confidence 3456889999999999999999988655 454 688999999999987510
Q ss_pred ccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhh
Q 011338 94 ASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEK 173 (488)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~ 173 (488)
+..++++.|++.+.+++. +|
T Consensus 204 ---------------------------------------------------------~~~~iv~~Ll~~gadvn~---~d 223 (301)
T 2b0o_E 204 ---------------------------------------------------------ASLPLVDFIIQNGGHLDA---KA 223 (301)
T ss_dssp ---------------------------------------------------------TTHHHHHHHHHHSSCTTC---CC
T ss_pred ---------------------------------------------------------CcHHHHHHHHhcCCCCCC---CC
Confidence 113455666666555544 67
Q ss_pred cCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHH
Q 011338 174 VGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQ 253 (488)
Q Consensus 174 ~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhl 253 (488)
.+|.||||+|+..|+.+++++|++.+++. ..+|.+|+||||+|+..|+.+++++|++.+++ .|+||||+
T Consensus 224 ~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~----------~g~tpLh~ 292 (301)
T 2b0o_E 224 ADGNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG----------TFAFPLHV 292 (301)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH----------TTSSCCC-
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC----------CCCChhHH
Confidence 88999999999999999999999998875 46699999999999999999999999998642 58999999
Q ss_pred HHHhCCC
Q 011338 254 AAFLAPS 260 (488)
Q Consensus 254 A~~~~~~ 260 (488)
|+..|+.
T Consensus 293 A~~~g~~ 299 (301)
T 2b0o_E 293 DYSWVIS 299 (301)
T ss_dssp -------
T ss_pred HHhcCCc
Confidence 9999874
No 86
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.81 E-value=6e-21 Score=167.62 Aligned_cols=122 Identities=9% Similarity=-0.029 Sum_probs=85.7
Q ss_pred HHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCcc-HHHHHHhcCChhHHHHHHhcC
Q 011338 155 LLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRH-IFSYATLQRQEKIFNLIYTMG 233 (488)
Q Consensus 155 il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t-~Lh~A~~~~~~~iv~~Ll~~~ 233 (488)
+++.|++.+...+. +|..|+||||+|+ .|+.+++++|++.+.+. +.+|..|+| |||+|+.+|+.+++++|++.|
T Consensus 27 ~v~~Ll~~g~~~~~---~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~g 101 (156)
T 1bi7_B 27 EVRALLEAGANPNA---PNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAAREGFLDTLVVLHRAG 101 (156)
T ss_dssp HHHHHHTTTCCTTC---CCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCC---CCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHHCCCHHHHHHHHHcC
Confidence 44444444433333 5778999999985 99999999999998774 466999999 999999999999999999998
Q ss_pred CccccccccccCCCCcHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchh
Q 011338 234 AKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRA 304 (488)
Q Consensus 234 ~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~ 304 (488)
++ ++.+|.+|+||||+|+..|+.++++.|.. .....+.+|..|.||.+
T Consensus 102 a~----~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~-------------------~ga~~~~~~~~g~t~~~ 149 (156)
T 1bi7_B 102 AR----LDVRDAWGRLPVDLAEELGHRDVARYLRA-------------------AAGGTRGSNHARIDAAE 149 (156)
T ss_dssp CC----SSCCCTTCCCHHHHHHHHTCHHHHHHHSS-------------------CC---------------
T ss_pred CC----CcccCCCCCCHHHHHHHhCHHHHHHHHHH-------------------cCCCCCccCcCcCcccc
Confidence 76 79999999999999999998665533211 23456777888888865
No 87
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.81 E-value=5.7e-21 Score=172.50 Aligned_cols=47 Identities=17% Similarity=0.010 Sum_probs=34.9
Q ss_pred CCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCC
Q 011338 19 GTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKP 67 (488)
Q Consensus 19 d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g 67 (488)
+.+|.||||.|+..|+.++++.|++ +.+++.+|.+|+||||+|+..|
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~ 87 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLG 87 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcC
Confidence 4577888888888888888888887 4456677777777777777666
No 88
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.81 E-value=6.7e-21 Score=163.36 Aligned_cols=50 Identities=20% Similarity=0.083 Sum_probs=39.0
Q ss_pred CCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCC
Q 011338 17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKP 67 (488)
Q Consensus 17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g 67 (488)
.+|.+|+||||+|+..|+.+++++|++.+ ..++.+|.+|+||||+|+..|
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~ 54 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNG-SDPNVKDHAGWTPLHEACNHG 54 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTT
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHHHcC
Confidence 36888889999999999999998888874 346677777777777777666
No 89
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.81 E-value=5.9e-21 Score=180.76 Aligned_cols=137 Identities=12% Similarity=0.033 Sum_probs=99.5
Q ss_pred CCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCC
Q 011338 19 GTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNI 98 (488)
Q Consensus 19 d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~ 98 (488)
+.+|.||||+|+..|+.++++.|++ +.+++.+|.+|+||||+||..|+
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~g~------------------------------ 89 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGS------------------------------ 89 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHHHHHHTC------------------------------
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCC------------------------------
Confidence 4578888888888888888888888 44577888888888888888772
Q ss_pred CCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhh-cCcc
Q 011338 99 SHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEK-VGIK 177 (488)
Q Consensus 99 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~-~~g~ 177 (488)
.++++.|++.+.+.+. ++ ..|.
T Consensus 90 ------------------------------------------------------~~~v~~Ll~~ga~~~~---~~~~~g~ 112 (244)
T 3ui2_A 90 ------------------------------------------------------DKCVRLLAEAGADLDH---RDMRGGL 112 (244)
T ss_dssp ------------------------------------------------------HHHHHHHHHTTCCTTC---CCSSSCC
T ss_pred ------------------------------------------------------HHHHHHHHHcCCCCCc---CCCCCCC
Confidence 1344444444444433 33 5688
Q ss_pred hHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHh
Q 011338 178 KVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFL 257 (488)
Q Consensus 178 tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~ 257 (488)
||||+|+..|+.+++++|++++++. +.+|..|+||||+|+..++ +..|.||||+|+..
T Consensus 113 t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~---------------------~~~~~~~l~~a~~~ 170 (244)
T 3ui2_A 113 TALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK---------------------TTPKGNPMQFGRRI 170 (244)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT---------------------TCCCSSHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh---------------------ccCCCCHHHHHHHc
Confidence 8888888888888888888887764 3558888888888875221 14578888888888
Q ss_pred CCCCCcccc
Q 011338 258 APSSQLDRV 266 (488)
Q Consensus 258 ~~~~~v~~l 266 (488)
|+.++++.+
T Consensus 171 g~~~iv~~L 179 (244)
T 3ui2_A 171 GLEKVINVL 179 (244)
T ss_dssp HHHHHHHHH
T ss_pred ChHHHHHHH
Confidence 876665443
No 90
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.81 E-value=1.3e-20 Score=161.52 Aligned_cols=102 Identities=13% Similarity=0.028 Sum_probs=84.5
Q ss_pred HHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCC
Q 011338 155 LLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGA 234 (488)
Q Consensus 155 il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~ 234 (488)
+++.+++.+...+. +|..|.||||+|+..|+.+++++|++.+.+. ..+|..|+||||+|+.+|+.+++++|++.|+
T Consensus 25 ~~~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga 100 (137)
T 3c5r_A 25 SVEYLLQNGSDPNV---KDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA 100 (137)
T ss_dssp HHHHHHHTTCCSCC---CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCCCc---CCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 34444444444433 5778999999999999999999999998774 4568999999999999999999999999987
Q ss_pred ccccccccccCCCCcHHHHHHHhCCCCCcc
Q 011338 235 KKNSVATNWDKAHNNILHQAAFLAPSSQLD 264 (488)
Q Consensus 235 ~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~ 264 (488)
+ ++.+|.+|+||||+|+..+..++++
T Consensus 101 ~----~~~~~~~g~tpl~~A~~~~~~~~l~ 126 (137)
T 3c5r_A 101 S----RNAVNIFGLRPVDYTDDESMKSLLL 126 (137)
T ss_dssp C----TTCCCTTSCCGGGGCCCHHHHHHHS
T ss_pred C----CCCCCCCCCCHHHHHhhccHHHHHh
Confidence 6 7999999999999999877655443
No 91
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.80 E-value=9.1e-21 Score=171.15 Aligned_cols=88 Identities=9% Similarity=-0.007 Sum_probs=78.8
Q ss_pred hhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHH
Q 011338 172 EKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNIL 251 (488)
Q Consensus 172 ~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpL 251 (488)
+|.+|+||||+|+..|+.+++++|++.+++.....+..|+||||+|+..|+.+++++|++.|++ ++.+|.+|+|||
T Consensus 72 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~----~~~~d~~g~tpl 147 (183)
T 3deo_A 72 VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD----IEVEDERGLTAL 147 (183)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCC----TTCCCTTSCCHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCC----CcCCCCCCCCHH
Confidence 5778999999999999999999999999886544338999999999999999999999999876 789999999999
Q ss_pred HHHHHhCCCCCc
Q 011338 252 HQAAFLAPSSQL 263 (488)
Q Consensus 252 hlA~~~~~~~~v 263 (488)
|+|++.++.+..
T Consensus 148 ~~A~~~~~~~~~ 159 (183)
T 3deo_A 148 ELAREILKTTPK 159 (183)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHhccCccc
Confidence 999998765543
No 92
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.80 E-value=3.8e-20 Score=158.57 Aligned_cols=88 Identities=15% Similarity=0.150 Sum_probs=80.0
Q ss_pred hhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHH
Q 011338 172 EKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNIL 251 (488)
Q Consensus 172 ~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpL 251 (488)
+|..|.||||+|+..|+.+++++|++.+++. +..|..|+||||+|+..|+.+++++|++.|++ ++.+|.+|+|||
T Consensus 43 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~tpl 117 (136)
T 2jab_A 43 KDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD----VNAQDKFGKTAF 117 (136)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTSCCHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CcCcCCCCCCHH
Confidence 5677999999999999999999999998875 45689999999999999999999999999876 789999999999
Q ss_pred HHHHHhCCCCCcc
Q 011338 252 HQAAFLAPSSQLD 264 (488)
Q Consensus 252 hlA~~~~~~~~v~ 264 (488)
|+|+..|+.++++
T Consensus 118 ~~A~~~~~~~~~~ 130 (136)
T 2jab_A 118 DISIGNGNEDLAE 130 (136)
T ss_dssp HHHHHTTCHHHHH
T ss_pred HHHHHCCCHHHHH
Confidence 9999999876553
No 93
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.79 E-value=7.7e-20 Score=153.70 Aligned_cols=81 Identities=16% Similarity=0.092 Sum_probs=74.0
Q ss_pred hhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHH
Q 011338 172 EKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNIL 251 (488)
Q Consensus 172 ~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpL 251 (488)
+|..|+||||+|+..|+.+++++|++.+++. +.+|..|+||||+|+..|+.+++++|++.|++ ++.+|.+|+|||
T Consensus 36 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l 110 (123)
T 3aaa_C 36 TLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD----KTVKGPDGLTAF 110 (123)
T ss_dssp CCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTSCCHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCCCHH
Confidence 5778999999999999999999999998875 45699999999999999999999999999876 789999999999
Q ss_pred HHHHHh
Q 011338 252 HQAAFL 257 (488)
Q Consensus 252 hlA~~~ 257 (488)
|+|...
T Consensus 111 ~~A~~~ 116 (123)
T 3aaa_C 111 EATDNQ 116 (123)
T ss_dssp HHCCCH
T ss_pred HHhCCH
Confidence 999544
No 94
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.79 E-value=2e-20 Score=177.11 Aligned_cols=84 Identities=10% Similarity=-0.010 Sum_probs=76.3
Q ss_pred hhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHH
Q 011338 172 EKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNIL 251 (488)
Q Consensus 172 ~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpL 251 (488)
+|..|+||||+||..|+.+++++|++.+++.....+..|+||||+|+.+|+.+++++|++.|++ ++.+|.+|+|||
T Consensus 73 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~----~~~~d~~g~t~l 148 (244)
T 3ui2_A 73 VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD----IEVEDERGLTAL 148 (244)
T ss_dssp BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTCCCHH
T ss_pred cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCCCCCCCcHH
Confidence 6778999999999999999999999999886555348899999999999999999999999887 789999999999
Q ss_pred HHHHHhCC
Q 011338 252 HQAAFLAP 259 (488)
Q Consensus 252 hlA~~~~~ 259 (488)
|+|+..++
T Consensus 149 ~~A~~~~~ 156 (244)
T 3ui2_A 149 ELAREILK 156 (244)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998655
No 95
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.79 E-value=2.3e-20 Score=169.18 Aligned_cols=131 Identities=11% Similarity=0.017 Sum_probs=108.5
Q ss_pred CCchhHHHHHHHcCCc----cHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhcccc
Q 011338 20 TNGAMLLTSCIIDDIF----DIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYAS 95 (488)
Q Consensus 20 ~~G~T~LH~A~~~g~~----div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~ 95 (488)
..|+||||+|+..|+. +++++||+. +.+++.+|.+|+||||+|+..++..
T Consensus 36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~-Gadvn~~d~~g~TpLh~a~~~~~~~------------------------- 89 (186)
T 3t8k_A 36 VLKSNILYDVLRNNNDEARYKISMFLINK-GADIKSRTKEGTTLFFPLFQGGGND------------------------- 89 (186)
T ss_dssp HHTTTHHHHHTTCSCHHHHHHHHHHHHHT-TCCSSCCCTTCCCTHHHHHHHCTTC-------------------------
T ss_pred cCCCCHHHHHHHcCCcchHHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCcc-------------------------
Confidence 6799999999999975 599999998 5568999999999999999887210
Q ss_pred CCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcC
Q 011338 96 NNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVG 175 (488)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~ 175 (488)
-....++++.|++.+.+++. +|..
T Consensus 90 -----------------------------------------------------~~~~~~iv~~Ll~~Gadin~---~d~~ 113 (186)
T 3t8k_A 90 -----------------------------------------------------ITGTTELCKIFLEKGADITA---LYKP 113 (186)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHHTTCCSSS---CBGG
T ss_pred -----------------------------------------------------hhhHHHHHHHHHHCCCCCCc---cCCC
Confidence 00124677777887777665 6888
Q ss_pred cc-hHHHHHHHc-----CcHHHHHHHHH-hCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcC
Q 011338 176 IK-KVVFIAVKH-----GIVEFITEIMK-HYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMG 233 (488)
Q Consensus 176 g~-tpLh~Aa~~-----G~~~~v~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~ 233 (488)
|+ ||||+|+.. ++.+++++|++ .+++. +.+|..|+||||+|++.|+.+++++|.+..
T Consensus 114 g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~-~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~ 177 (186)
T 3t8k_A 114 YKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDKWGLTALEFVKRCQKPIALKMMEDYI 177 (186)
T ss_dssp GTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT-TCCCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 99 999999994 45679999999 88775 566999999999999999999999999764
No 96
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.79 E-value=2e-19 Score=150.93 Aligned_cols=88 Identities=18% Similarity=0.217 Sum_probs=79.8
Q ss_pred hhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHH
Q 011338 172 EKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNIL 251 (488)
Q Consensus 172 ~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpL 251 (488)
++..|.||||+|+..|+.+++++|++.+++. ..+|..|+||||+|+..|+.+++++|++.|.+ ++.+|.+|+|||
T Consensus 31 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~g~t~l 105 (126)
T 1n0r_A 31 KDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD----VNAKDKNGRTPL 105 (126)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHH
T ss_pred cCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHcChHHHHHHHHHcCCC----CcccCCCCCCHH
Confidence 5677999999999999999999999998775 45689999999999999999999999999876 789999999999
Q ss_pred HHHHHhCCCCCcc
Q 011338 252 HQAAFLAPSSQLD 264 (488)
Q Consensus 252 hlA~~~~~~~~v~ 264 (488)
|+|+..|+.++++
T Consensus 106 ~~A~~~~~~~~~~ 118 (126)
T 1n0r_A 106 HLAARNGHLEVVK 118 (126)
T ss_dssp HHHHHTTCHHHHH
T ss_pred HHHHHcCcHHHHH
Confidence 9999999876654
No 97
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.79 E-value=5.9e-20 Score=170.92 Aligned_cols=63 Identities=10% Similarity=-0.012 Sum_probs=36.0
Q ss_pred hhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCc
Q 011338 172 EKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAK 235 (488)
Q Consensus 172 ~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~ 235 (488)
+|..|.||||+|+..|+.+++++|++.+++. +.+|.+|+||||+|+..++.++++.|++.++.
T Consensus 136 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~ 198 (222)
T 3ehr_A 136 QNKLGDTALHAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDAV 198 (222)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC--------
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccchh
Confidence 4555666777766666666666666666553 34466666677766666666666666666543
No 98
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.78 E-value=1.3e-19 Score=152.33 Aligned_cols=115 Identities=12% Similarity=0.016 Sum_probs=92.3
Q ss_pred CCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCC
Q 011338 18 KGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNN 97 (488)
Q Consensus 18 ~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~ 97 (488)
.+..|.||||.|+..|+.+++++|++.++ .++.+|.+|+||||+|+..|+
T Consensus 3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~-~~~~~~~~g~t~L~~A~~~~~----------------------------- 52 (123)
T 3aaa_C 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGE-DVNRTLEGGRKPLHYAADCGQ----------------------------- 52 (123)
T ss_dssp ----CHHHHHHHHHTTCHHHHHHHHHTTC-CTTSCCTTSSCHHHHHHHTTC-----------------------------
T ss_pred cccccchHHHHHHHcCCHHHHHHHHHcCC-CcCccCCCCCcHHHHHHHcCC-----------------------------
Confidence 35678999999999999999999999865 578999999999999999982
Q ss_pred CCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcc
Q 011338 98 ISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIK 177 (488)
Q Consensus 98 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~ 177 (488)
.++++.|++.+.+.+. +|..|+
T Consensus 53 -------------------------------------------------------~~~v~~Ll~~g~~~~~---~d~~g~ 74 (123)
T 3aaa_C 53 -------------------------------------------------------LEILEFLLLKGADINA---PDKHHI 74 (123)
T ss_dssp -------------------------------------------------------HHHHHHHHTTTCCTTC---CCTTSC
T ss_pred -------------------------------------------------------HHHHHHHHHcCCCCCc---CCCCCC
Confidence 2344445554444433 677899
Q ss_pred hHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcC
Q 011338 178 KVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQR 221 (488)
Q Consensus 178 tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~ 221 (488)
||||+|+..|+.+++++|++.+++. ..+|.+|+||||+|...+
T Consensus 75 tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~ 117 (123)
T 3aaa_C 75 TPLLSAVYEGHVSCVKLLLSKGADK-TVKGPDGLTAFEATDNQA 117 (123)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCCHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHhCCHH
Confidence 9999999999999999999998875 456999999999995443
No 99
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.78 E-value=4.7e-20 Score=172.82 Aligned_cols=104 Identities=7% Similarity=-0.027 Sum_probs=87.2
Q ss_pred HHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCC
Q 011338 155 LLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGA 234 (488)
Q Consensus 155 il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~ 234 (488)
+++.|++.+.+.+. +|.+|+||||+||..|+.+++++|++.+++. +.+|..|+||||+|+.+|+.+++++|++.|+
T Consensus 36 ~v~~Ll~~g~~~~~---~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga 111 (229)
T 2vge_A 36 VVQQAVKEMNDPSQ---PNEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAASCNDTVICMALVQHGA 111 (229)
T ss_dssp HHHHHHHHSSCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred HHHHHHhcCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 44444444444333 6778999999999999999999999998875 4569999999999999999999999999987
Q ss_pred cccccccccc-CCCCcHHHHH--HHhCCCCCcccc
Q 011338 235 KKNSVATNWD-KAHNNILHQA--AFLAPSSQLDRV 266 (488)
Q Consensus 235 ~~~~~~~~~D-~~G~TpLhlA--~~~~~~~~v~~l 266 (488)
+ ++.+| .+|+||||+| +..|+.++++.+
T Consensus 112 ~----~~~~~~~~g~tpL~~A~a~~~~~~~~v~~L 142 (229)
T 2vge_A 112 A----IFATTLSDGATAFEKCDPYREGYADCATYL 142 (229)
T ss_dssp C----TTCCCSSTTCCTGGGCCTTSTTHHHHHHHH
T ss_pred C----cccccCCCCCCHHHHHHHHhcChHHHHHHH
Confidence 6 68876 6999999999 888888887665
No 100
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.76 E-value=2e-19 Score=167.36 Aligned_cols=105 Identities=11% Similarity=0.051 Sum_probs=85.2
Q ss_pred HHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCC
Q 011338 155 LLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGA 234 (488)
Q Consensus 155 il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~ 234 (488)
+++.|++.+.+.+. +|..|+||||+||..|+.+++++|++......+.+|..|+||||+|+..|+.+++++|++.|+
T Consensus 88 ~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga 164 (222)
T 3ehr_A 88 WLRECLDNRVGVNG---LDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164 (222)
T ss_dssp HHHHHHHTTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred HHHHHHhCCCCccc---cCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 33344444433332 577899999999999999999999998333356679999999999999999999999999988
Q ss_pred ccccccccccCCCCcHHHHHHHhCCCCCcccc
Q 011338 235 KKNSVATNWDKAHNNILHQAAFLAPSSQLDRV 266 (488)
Q Consensus 235 ~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l 266 (488)
+ ++.+|.+|+||||+|+..++.++++.+
T Consensus 165 ~----~~~~~~~g~t~l~~A~~~~~~~~l~~l 192 (222)
T 3ehr_A 165 R----TDLRNIEKKLAFDMATNAACASLLKKK 192 (222)
T ss_dssp C----SCCCCTTSCCHHHHCCSHHHHHHHC--
T ss_pred C----CccccCCCCCHHHHhcchhHHHHHHHH
Confidence 7 789999999999999998876666544
No 101
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.75 E-value=6.8e-20 Score=184.08 Aligned_cols=113 Identities=11% Similarity=-0.082 Sum_probs=82.1
Q ss_pred CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccc--cccccCCCChHHHHHhhCCCCCCCCchhhH
Q 011338 1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKL--AYAQDNDGDTAIDMLAQKPSAFPSGTQLAF 78 (488)
Q Consensus 1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~--~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~ 78 (488)
+|++|+++++........|..|.||||+|+..|+.|+|++|++.+++. .+..+.+ .||||+||..| +.++
T Consensus 107 ~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G-------~~ei 178 (376)
T 2aja_A 107 ALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENG-------HLHV 178 (376)
T ss_dssp HHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTT-------CHHH
T ss_pred HHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCC-------CHHH
Confidence 478888888744333345778999999999999999999999997531 1222333 99999999999 5778
Q ss_pred HHHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHH-HHHHHHHHHHHhhcc
Q 011338 79 WKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRA-MTKLLHMVWKSLNLF 135 (488)
Q Consensus 79 ~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~-~~~~~~~~~~ll~~~ 135 (488)
++.|+....++..- ..+..|.||||.|+ ..++.++++.|++.+
T Consensus 179 v~~Ll~~ga~~~~~--------------~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g 222 (376)
T 2aja_A 179 LNRLCELAPTEATA--------------MIQAENYYAFRWAAVGRGHHNVINFLLDCP 222 (376)
T ss_dssp HHHHHHSCGGGHHH--------------HHHHHHHHHHHHHHSTTCCHHHHHHHTTSH
T ss_pred HHHHHHcCCccchh--------------ccCCCCCCHHHHHHHHCCCHHHHHHHHhCC
Confidence 88888665432210 01345899999999 999999999998855
No 102
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.74 E-value=3e-18 Score=171.49 Aligned_cols=151 Identities=12% Similarity=0.010 Sum_probs=105.8
Q ss_pred CCCCchhHHHHHHHc-CCccHHHHHHHhCcccccccc--CCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccc
Q 011338 18 KGTNGAMLLTSCIID-DIFDIPLDLLQRYRKLAYAQD--NDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYA 94 (488)
Q Consensus 18 ~d~~G~T~LH~A~~~-g~~div~~LL~~~~~~~~~~d--~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~ 94 (488)
.+..+.|+||.|+.. |+.++++.||+.+. +++..| .+|.||||+||..|+
T Consensus 195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Ga-dvn~~~~~~~g~TpLh~Aa~~g~-------------------------- 247 (368)
T 3jue_A 195 GSLHPGALLFRASGHPPSLPTMADALAHGA-DVNWVNGGQDNATPLIQATAANS-------------------------- 247 (368)
T ss_dssp --CCHHHHHHHHTSSSCCHHHHHHHHHTTC-CTTCCCTTTTCCCHHHHHHHTTC--------------------------
T ss_pred ccCCCCcHHHHHHHccCCHHHHHHHHHcCC-CCCccccccCCCCHHHHHHHCCC--------------------------
Confidence 345678999999999 99999999999854 577777 889999999999882
Q ss_pred cCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhc
Q 011338 95 SNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKV 174 (488)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~ 174 (488)
.++++.|++.+.+++. +|.
T Consensus 248 ----------------------------------------------------------~~iv~~LL~~Gadvn~---~d~ 266 (368)
T 3jue_A 248 ----------------------------------------------------------LLACEFLLQNGANVNQ---ADS 266 (368)
T ss_dssp ----------------------------------------------------------HHHHHHHHHTTCCTTC---CCT
T ss_pred ----------------------------------------------------------HHHHHHHHHcCCCCCC---CCC
Confidence 2344555555555443 677
Q ss_pred CcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHH
Q 011338 175 GIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQA 254 (488)
Q Consensus 175 ~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA 254 (488)
.|.||||+|+..|+.+++++|++++++. +.+|.+|+||||+|+..|+.+++++|++.+.. .......+..|.|+|+++
T Consensus 267 ~G~TpLh~A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~-~~~~~~~~~~~~t~l~i~ 344 (368)
T 3jue_A 267 AGRGPLHHATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMR-EAEAAQGQAGDETYLDIF 344 (368)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------------
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-cccccccCCCCCCHHHHH
Confidence 8999999999999999999999998875 45699999999999999999999999987643 223345677888999887
Q ss_pred HHhC
Q 011338 255 AFLA 258 (488)
Q Consensus 255 ~~~~ 258 (488)
....
T Consensus 345 ~~~~ 348 (368)
T 3jue_A 345 RDFS 348 (368)
T ss_dssp ----
T ss_pred HHHH
Confidence 6543
No 103
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.73 E-value=2.6e-18 Score=136.79 Aligned_cols=85 Identities=19% Similarity=0.225 Sum_probs=76.8
Q ss_pred CcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHH
Q 011338 175 GIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQA 254 (488)
Q Consensus 175 ~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA 254 (488)
+|+||||+|+..|+.+++++|++.+++. +.+|..|+||||+|+.+|+.+++++|++.|++ ++.+|.+|+||||+|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~d~~g~t~l~~A 75 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD----VNAKDKNGRTPLHLA 75 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCccCCCCCCHHHHH
Confidence 4899999999999999999999998875 45699999999999999999999999999876 799999999999999
Q ss_pred HHhCCCCCcc
Q 011338 255 AFLAPSSQLD 264 (488)
Q Consensus 255 ~~~~~~~~v~ 264 (488)
+..|+.++++
T Consensus 76 ~~~~~~~~~~ 85 (93)
T 1n0q_A 76 ARNGHLEVVK 85 (93)
T ss_dssp HHTTCHHHHH
T ss_pred HHcCCHHHHH
Confidence 9999876654
No 104
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.73 E-value=1.1e-17 Score=174.75 Aligned_cols=140 Identities=8% Similarity=-0.007 Sum_probs=106.0
Q ss_pred CchhHHHHHHHcCCccHHHHHHHhCccccccc------cCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccc
Q 011338 21 NGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQ------DNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYA 94 (488)
Q Consensus 21 ~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~------d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~ 94 (488)
...+.||.|+..|+.+.++.||+.+. +++.+ |..|+||||+||....
T Consensus 131 ~~~~~L~~A~~~g~~~~v~~ll~~g~-~~n~~~~~~~~~~~g~t~Lh~A~~~a~-------------------------- 183 (497)
T 3lvq_E 131 PEPQRLWTAICNRDLLSVLEAFANGQ-DFGQPLPGPDAQAPEELVLHLAVKVAN-------------------------- 183 (497)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHHHTTC-CSSSCBCCSSSCCSCBCHHHHHHHTCC--------------------------
T ss_pred ccHHHHHHHHhccCHHHHHHHHhhcc-cccCCCCCcccccccchHHHHHHHhcc--------------------------
Confidence 34578999999999999999999964 45655 8899999999976320
Q ss_pred cCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhc
Q 011338 95 SNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKV 174 (488)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~ 174 (488)
.+..++++.|++.+.+.+. +|.
T Consensus 184 -------------------------------------------------------~g~~~~v~~Ll~~ga~vn~---~d~ 205 (497)
T 3lvq_E 184 -------------------------------------------------------QASLPLVDFIIQNGGHLDA---KAA 205 (497)
T ss_dssp -------------------------------------------------------TTTHHHHHHHHHHSCCTTC---CCS
T ss_pred -------------------------------------------------------cccHHHHHHHHHcCCCCCc---cCC
Confidence 0113556666666665554 688
Q ss_pred CcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHH
Q 011338 175 GIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQA 254 (488)
Q Consensus 175 ~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA 254 (488)
+|+||||+||..|+.+++++|++++++. +.+|.+|+||||+|+..|+.+++++|++.|++ ++. ||+|.+
T Consensus 206 ~g~TpLh~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~----~~~------~~~h~~ 274 (497)
T 3lvq_E 206 DGNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG----TFA------FPLHVD 274 (497)
T ss_dssp SSCCHHHHHTTTTCHHHHHHHHHTCCCC-SCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC--------------------
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCC----CCC------Ccceee
Confidence 8999999999999999999999999885 45699999999999999999999999999876 333 688876
Q ss_pred HH
Q 011338 255 AF 256 (488)
Q Consensus 255 ~~ 256 (488)
..
T Consensus 275 ~~ 276 (497)
T 3lvq_E 275 YS 276 (497)
T ss_dssp --
T ss_pred cc
Confidence 54
No 105
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.72 E-value=1.2e-17 Score=161.25 Aligned_cols=129 Identities=8% Similarity=0.011 Sum_probs=98.2
Q ss_pred CchhHHHHHHHcCCccHHHHHHHhCccc-----cccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhcccc
Q 011338 21 NGAMLLTSCIIDDIFDIPLDLLQRYRKL-----AYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYAS 95 (488)
Q Consensus 21 ~G~T~LH~A~~~g~~div~~LL~~~~~~-----~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~ 95 (488)
...++||.|+..|+.+.++.+++.+.+. ++..|..|+||||+||..|+.
T Consensus 129 ~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~-------------------------- 182 (278)
T 1dcq_A 129 AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDR-------------------------- 182 (278)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCT--------------------------
T ss_pred hhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhccc--------------------------
Confidence 3467888999999988888888886653 344577888999988887410
Q ss_pred CCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcC
Q 011338 96 NNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVG 175 (488)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~ 175 (488)
+..++++.|++.+.+++. +|.+
T Consensus 183 -------------------------------------------------------~~~~~v~~Ll~~ga~in~---~d~~ 204 (278)
T 1dcq_A 183 -------------------------------------------------------TSLHIVDFLVQNSGNLDK---QTGK 204 (278)
T ss_dssp -------------------------------------------------------TTHHHHHHHHHHCSCTTC---CCTT
T ss_pred -------------------------------------------------------chHHHHHHHHHCCCCccc---cCCC
Confidence 013455555555555443 5778
Q ss_pred cchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCC
Q 011338 176 IKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGA 234 (488)
Q Consensus 176 g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~ 234 (488)
|+||||+|+..|+.+++++|++.+++. +.+|.+|+||||+|+..|+.+++++|++.|+
T Consensus 205 g~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga 262 (278)
T 1dcq_A 205 GSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALS 262 (278)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 899999999999999999999988775 4568899999999999999999999988864
No 106
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.70 E-value=2e-17 Score=165.50 Aligned_cols=114 Identities=14% Similarity=0.028 Sum_probs=81.2
Q ss_pred cCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHH
Q 011338 174 VGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQ 253 (488)
Q Consensus 174 ~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhl 253 (488)
..|.||||+|+..|+.+++++|++++.+.. ..|..|+||||+|+..|+.+++++|++.|++ ++.+|.+|+||||+
T Consensus 233 ~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn-~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad----~~~~d~~G~TpL~~ 307 (368)
T 3jue_A 233 QDNATPLIQATAANSLLACEFLLQNGANVN-QADSAGRGPLHHATILGHTGLACLFLKRGAD----LGARDSEGRDPLTI 307 (368)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTSCCHHHH
T ss_pred cCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCcHHHHHHHHHCcCC----CCCcCCCCCCHHHH
Confidence 679999999999999999999999988754 6699999999999999999999999999887 79999999999999
Q ss_pred HHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhH
Q 011338 254 AAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSD 308 (488)
Q Consensus 254 A~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~ 308 (488)
|+..|+.++++.|.... .........+..+.|+++++..
T Consensus 308 A~~~g~~~iv~lLl~~~----------------~~~~~~~~~~~~~~t~l~i~~~ 346 (368)
T 3jue_A 308 AMETANADIVTLLRLAK----------------MREAEAAQGQAGDETYLDIFRD 346 (368)
T ss_dssp HHHTTCHHHHHHHHHHH----------------C---------------------
T ss_pred HHHCCCHHHHHHHHHcC----------------CCcccccccCCCCCCHHHHHHH
Confidence 99999977664431110 1112223456678899888754
No 107
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.70 E-value=4.8e-17 Score=156.89 Aligned_cols=88 Identities=10% Similarity=0.076 Sum_probs=80.4
Q ss_pred hhcCcchHHHHHHHc---CcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCC
Q 011338 172 EKVGIKKVVFIAVKH---GIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHN 248 (488)
Q Consensus 172 ~~~~g~tpLh~Aa~~---G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~ 248 (488)
.+..|+||||+|+.. |+.+++++|++++++. +.+|.+|+||||+|+.+|+.+++++|++.|++ ++.+|.+|+
T Consensus 165 ~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad----~~~~d~~g~ 239 (278)
T 1dcq_A 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYCCLTDNAECLKLLLRGKAS----IEIANESGE 239 (278)
T ss_dssp CSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSC
T ss_pred cccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCccCCCC
Confidence 467799999999999 9999999999999885 45699999999999999999999999999987 799999999
Q ss_pred cHHHHHHHhCCCCCcc
Q 011338 249 NILHQAAFLAPSSQLD 264 (488)
Q Consensus 249 TpLhlA~~~~~~~~v~ 264 (488)
||||+|+..|+.++++
T Consensus 240 tpL~~A~~~~~~~~v~ 255 (278)
T 1dcq_A 240 TPLDIAKRLKHEHCEE 255 (278)
T ss_dssp CHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHcCCHHHHH
Confidence 9999999999876653
No 108
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.69 E-value=4e-17 Score=129.87 Aligned_cols=46 Identities=22% Similarity=0.245 Sum_probs=28.0
Q ss_pred CchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCC
Q 011338 21 NGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKP 67 (488)
Q Consensus 21 ~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g 67 (488)
+|+||||+|+..|+.+++++|++.+. .++.+|.+|+||||+|+..|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~n~~d~~g~t~L~~A~~~~ 46 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNG 46 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCCCHHHHHHHcC
Confidence 46777777777777777777777633 34555555555555555544
No 109
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.69 E-value=5.1e-17 Score=158.54 Aligned_cols=107 Identities=14% Similarity=0.083 Sum_probs=88.1
Q ss_pred hhcCcchHHHHHHHc---CcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCC
Q 011338 172 EKVGIKKVVFIAVKH---GIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHN 248 (488)
Q Consensus 172 ~~~~g~tpLh~Aa~~---G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~ 248 (488)
.+..|.||||+|+.. |+.+++++|++.+++. +.+|.+|+||||+|+..|+.+++++|++.|++ ++.+|.+|+
T Consensus 186 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad----~~~~d~~G~ 260 (301)
T 2b0o_E 186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTALHYAALYNQPDCLKLLLKGRAL----VGTVNEAGE 260 (301)
T ss_dssp SCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----CSCCCTTSC
T ss_pred cCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCC
Confidence 366799999999997 9999999999998875 45699999999999999999999999999887 799999999
Q ss_pred cHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhH
Q 011338 249 NILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSD 308 (488)
Q Consensus 249 TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~ 308 (488)
||||+|+..|+.++++.| .+...+.|.||++++.+
T Consensus 261 TpL~~A~~~~~~~iv~~L-------------------------l~~ga~~g~tpLh~A~~ 295 (301)
T 2b0o_E 261 TALDIARKKHHKECEELL-------------------------EQAQAGTFAFPLHVDYS 295 (301)
T ss_dssp CHHHHHHHHTCHHHHHHH-------------------------HHHHHHTTSSCCC----
T ss_pred CHHHHHHHcCCHHHHHHH-------------------------HHhcCCCCCChhHHHHh
Confidence 999999999986655322 11222478999999765
No 110
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.67 E-value=5.2e-17 Score=134.45 Aligned_cols=89 Identities=11% Similarity=0.073 Sum_probs=66.3
Q ss_pred HHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCC
Q 011338 155 LLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGA 234 (488)
Q Consensus 155 il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~ 234 (488)
+++.|++.+.+.+. +|..|.||||+|+..|+.+++++|++.+++. ..+|..|+||||+|+..|+.+++++|++.|+
T Consensus 24 ~~~~Ll~~g~~~~~---~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga 99 (115)
T 2l6b_A 24 EVKKLLSKGADVNA---RSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99 (115)
T ss_dssp HHHHHTTTTCCSSC---CCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHHHHTTTCHHHHHHHHTTSS
T ss_pred HHHHHHHcCCCCCC---cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence 34444444433333 5677889999999999999999998887774 4558888999999999999999999988887
Q ss_pred ccccccccccCCCCcHH
Q 011338 235 KKNSVATNWDKAHNNIL 251 (488)
Q Consensus 235 ~~~~~~~~~D~~G~TpL 251 (488)
+ +|.+|..|.||=
T Consensus 100 ~----~n~~~~~~~~~~ 112 (115)
T 2l6b_A 100 D----VNARSWGSSHHH 112 (115)
T ss_dssp S----HHHHSCCCC---
T ss_pred C----CCcCCccccccc
Confidence 6 688888888873
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.66 E-value=2.7e-17 Score=136.23 Aligned_cols=108 Identities=13% Similarity=0.072 Sum_probs=89.7
Q ss_pred hhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHH
Q 011338 172 EKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNIL 251 (488)
Q Consensus 172 ~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpL 251 (488)
+|.+|+||||+|+..|+.++++.|++.+++. +.+|..|+||||+|+..|+.+++++|++.|++ ++.+|.+|+|||
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~d~~g~tpl 79 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD----VNARSKDGNTPE 79 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC----TTCCCTTCCCTT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC----CcccCCCCCCHH
Confidence 5778999999999999999999999998874 45699999999999999999999999999876 789999999999
Q ss_pred HHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCch
Q 011338 252 HQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPR 303 (488)
Q Consensus 252 hlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~ 303 (488)
|+|+..++.++++.+. -...+.+.++..|.||.
T Consensus 80 ~~A~~~~~~~~~~~Ll-------------------~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 80 HLAKKNGHHEIVKLLD-------------------AKGADVNARSWGSSHHH 112 (115)
T ss_dssp HHHHTTTCHHHHHHHH-------------------TTSSSHHHHSCCCC---
T ss_pred HHHHHCCCHHHHHHHH-------------------HcCCCCCcCCccccccc
Confidence 9999999865543221 02345677888888874
No 112
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.64 E-value=1.4e-16 Score=130.98 Aligned_cols=87 Identities=14% Similarity=0.093 Sum_probs=78.2
Q ss_pred hhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHH
Q 011338 172 EKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNIL 251 (488)
Q Consensus 172 ~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpL 251 (488)
.|.+|.||||+|+..|+.+++++|++.+++. +.+|..|+||||+|+.+|+.+++++|++.|++ ++.+|.+|+|||
T Consensus 20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~----~~~~d~~g~tpl 94 (110)
T 2zgd_A 20 MGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD----VXAQDKFGKTAF 94 (110)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHH
T ss_pred cCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----ccccccCCCcHH
Confidence 4778999999999999999999999998775 45699999999999999999999999999876 799999999999
Q ss_pred HHHHHhCCCCCc
Q 011338 252 HQAAFLAPSSQL 263 (488)
Q Consensus 252 hlA~~~~~~~~v 263 (488)
|+|+..|+.+++
T Consensus 95 ~~A~~~~~~~~~ 106 (110)
T 2zgd_A 95 DISIDNGNEDLA 106 (110)
T ss_dssp HHHHHHTCHHHH
T ss_pred HHHHHcCCHHHH
Confidence 999999986654
No 113
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.58 E-value=1.9e-15 Score=157.81 Aligned_cols=89 Identities=16% Similarity=0.116 Sum_probs=81.9
Q ss_pred hcCcchHHHHHHH---cCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCc
Q 011338 173 KVGIKKVVFIAVK---HGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNN 249 (488)
Q Consensus 173 ~~~g~tpLh~Aa~---~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~T 249 (488)
|..|.||||+||. .|+.+++++|++.+++. +.+|.+|+||||+|+.+|+.+++++|++.|++ ++.+|.+|+|
T Consensus 168 ~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~----~~~~d~~g~t 242 (497)
T 3lvq_E 168 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTALHYAALYNQPDCLKLLLKGRAL----VGTVNEAGET 242 (497)
T ss_dssp CCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCC----CSCCCTTCCC
T ss_pred ccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCCC
Confidence 6789999999976 99999999999999875 45699999999999999999999999999987 7999999999
Q ss_pred HHHHHHHhCCCCCcccc
Q 011338 250 ILHQAAFLAPSSQLDRV 266 (488)
Q Consensus 250 pLhlA~~~~~~~~v~~l 266 (488)
|||+|+..|+.++++.|
T Consensus 243 pl~~A~~~~~~~~~~~L 259 (497)
T 3lvq_E 243 ALDIARKKHHKECEELL 259 (497)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHH
Confidence 99999999998887655
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.53 E-value=1.5e-14 Score=118.72 Aligned_cols=51 Identities=18% Similarity=0.106 Sum_probs=34.6
Q ss_pred CCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCC
Q 011338 16 PDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKP 67 (488)
Q Consensus 16 ~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g 67 (488)
...|.+|.||||+|+..|+.+++++|++.+ .+++.+|.+|+||||+||..|
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~i~~~d~~g~tpLh~A~~~~ 68 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMANG-ADVAAKDKNGSTPLHLAARNG 68 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTT
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcC
Confidence 356788889999999988888888888774 345556666666666665555
No 115
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=28.95 E-value=1e+02 Score=19.51 Aligned_cols=11 Identities=18% Similarity=0.622 Sum_probs=7.3
Q ss_pred hhCCCCCCCCC
Q 011338 470 TYGPGIFNKPK 480 (488)
Q Consensus 470 ~~~~~~~~~~~ 480 (488)
-|-.|+|.|++
T Consensus 31 LwK~GFFkR~~ 41 (42)
T 2k1a_A 31 MWKVGFFKRNR 41 (42)
T ss_dssp HHHTTTTCCCC
T ss_pred HHHcCcccCCC
Confidence 34558888765
No 116
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=26.06 E-value=50 Score=22.16 Aligned_cols=10 Identities=40% Similarity=0.690 Sum_probs=6.8
Q ss_pred CCCCCCCCcc
Q 011338 473 PGIFNKPKKW 482 (488)
Q Consensus 473 ~~~~~~~~~~ 482 (488)
.|+|.|+++.
T Consensus 33 ~GFFKR~~~~ 42 (54)
T 2l8s_A 33 IGFFKRPLKK 42 (54)
T ss_dssp HHHTTSCCSC
T ss_pred cCcccCCCcc
Confidence 3788777654
Done!