BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011339
(488 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 149/498 (29%), Positives = 231/498 (46%), Gaps = 69/498 (13%)
Query: 7 CQQPHFVLFPFLAQGHMIPMIDTA-RLLAQHGAAITIVTT---PANAARFKTVVARAMQS 62
+ PH + P GH+IP+++ A RL+ HG +T V P + A+ R +
Sbjct: 4 SKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQ------RTVLD 57
Query: 63 GLPLQLIEIQFPYQEAGVPEGCENFDMLHSTDLVSNFFKSXXXXXXXXXXXXXXXTPK-- 120
LP + + P + D+ ST + S +
Sbjct: 58 SLPSSISSVFLP--------PVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGR 109
Query: 121 -PSCIVSDTCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSTVQENVTSN----SD 175
P+ +V D D A F++P F+ + L + LH + E V+ ++
Sbjct: 110 LPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLS--FFLHLPKLDETVSCEFRELTE 167
Query: 176 YLVVPG-LP----DQIEMTKVREKWKDFGEMVLAADMKSY----GIIINTFEELELEYVK 226
L++PG +P D ++ + R KD L + K Y GI++NTF ELE +K
Sbjct: 168 PLMLPGCVPVAGKDFLDPAQDR---KDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIK 224
Query: 227 ECKKTKGGK--VWCLGPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLG 284
++ K V+ +GP+ KQ+ + E SECL WLD+ P SV+YV G
Sbjct: 225 ALQEPGLDKPPVYPVGPLVNIGKQEAKQTEE--------SECLKWLDNQPLGSVLYVSFG 276
Query: 285 SICNLTSSQMIELGLGLEASKKPFIWVIRGG---------NNTSKEIQEWLLEEKFEERV 335
S LT Q+ EL LGL S++ F+WVIR ++ S+ L F ER
Sbjct: 277 SGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERT 336
Query: 336 KGRGILILGWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQFWNEKLI 395
K RG +I WAPQ +L+HPS GGFLTHC WNS+LE + +G+PLI WPLY +Q N L+
Sbjct: 337 KKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLL 396
Query: 396 VQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIM 455
+ + +R G++ LV++E+V + + LM EG E R + +E +
Sbjct: 397 SEDIRAALRPRA------GDDG----LVRREEVARVVKGLM-EGEEGKGVRNKMKELKEA 445
Query: 456 AKRATEETRSSSLMIKLL 473
A R ++ +S+ + L+
Sbjct: 446 ACRVLKDDGTSTKALSLV 463
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 178 bits (452), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 146/505 (28%), Positives = 222/505 (43%), Gaps = 67/505 (13%)
Query: 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARF-KTVVARAMQSGLPL 66
++PH V+ P+ QGH+ P+ A+LL G IT V T N R K+ +A
Sbjct: 7 RKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDF 66
Query: 67 QLIEIQ---FPYQEAG-----VPEGCENFDMLHSTDLVSNFFKSXXXXXXXXXXXXXXXT 118
I P + G VP C++ + NF K
Sbjct: 67 NFESIPDGLTPMEGDGDVSQDVPTLCQS--------VRKNFLKPYCELLTRLNHSTN--V 116
Query: 119 PKPSCIVSDTCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSTVQENVTSNSD--Y 176
P +C+VSD C +T+ A F +P + + S LL + + S V+ + D Y
Sbjct: 117 PPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFR-SFVERGIIPFKDESY 175
Query: 177 LV----------VPGLP--------DQIEMTKVREKWKDFGEMVLAADMKSYGIIINTFE 218
L +PGL D I T + +F V K I++NTF
Sbjct: 176 LTNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFN 235
Query: 219 ELELEYVKECKKTKGGKVWCLGPVSLCNKQ-----DIDKAERGKKAAVDISECLNWLDSW 273
ELE + + T ++ +GP+ KQ +D + + +ECL+WL+S
Sbjct: 236 ELESDVINALSSTIPS-IYPIGPLPSLLKQTPQIHQLDSLD--SNLWKEDTECLDWLESK 292
Query: 274 PPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEE 333
P SVVYV GS +T Q++E GL KK F+W+IR + + +F
Sbjct: 293 EPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSV---IFSSEFTN 349
Query: 334 RVKGRGILILGWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQFWNEK 393
+ RG LI W PQ +L+HPSIGGFLTHC WNS+ E I AGVP++ WP + DQ + +
Sbjct: 350 EIADRG-LIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCR 408
Query: 394 LIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQ 453
I IG+ EI VK+E++ K IN ++ G + +++A E +
Sbjct: 409 FICNEWEIGM--------------EIDTNVKREELAKLINEVI-AGDKGKKMKQKAMELK 453
Query: 454 IMAKRATEETRSSSLMIKLLIQDIM 478
A+ T S + + +I+D++
Sbjct: 454 KKAEENTRPGGCSYMNLNKVIKDVL 478
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 137/493 (27%), Positives = 224/493 (45%), Gaps = 62/493 (12%)
Query: 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVT-------TPANAARFKTVVARAM 60
+ + P GH+ ++ A+LL H + I P + K+V+A
Sbjct: 8 KNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQP 67
Query: 61 QSGLPLQLIEIQFPYQEAGVPEGCENFDMLHSTDL-VSNFFKSXXXXXXXXXXXXXXXTP 119
Q L + L E++ P QE +L S + + F +S +
Sbjct: 68 QIQL-IDLPEVEPPPQE-----------LLKSPEFYILTFLESLIPHVKATIKTIL--SN 113
Query: 120 KPSCIVSDTCYPWTVDTAARFNIPRISFH----GFSCFCLLCLYNLHTSTVQENVTSNSD 175
K +V D +D F IP F GF +L L N V ++ +
Sbjct: 114 KVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSL-MLSLKNRQIEEVFDDSDRDHQ 172
Query: 176 YLVVPGLPDQIEMTKVREKW--KDFGEMV---LAADMK-SYGIIINTFEELELEYVKEC- 228
L +PG+ +Q+ + + KD G + LA + + GII+NTF +LE +
Sbjct: 173 LLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALY 232
Query: 229 -KKTKGGKVWCLGPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSI- 286
K ++ +GP+ Q K ++ + + L WLD P SVV++C GS+
Sbjct: 233 DHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLI-----LKWLDEQPDKSVVFLCFGSMG 287
Query: 287 CNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEE--RVKGRGILILG 344
+ SQ+ E+ LGL+ S F+W N+ K++ E F E ++G+G +I G
Sbjct: 288 VSFGPSQIREIALGLKHSGVRFLW----SNSAEKKV----FPEGFLEWMELEGKG-MICG 338
Query: 345 WAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVR 404
WAPQV +L+H +IGGF++HC WNS LE + GVP++TWP+Y +Q N +V+ GV
Sbjct: 339 WAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVK--EWGVG 396
Query: 405 IGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETR 464
+G+ V G + +V E++ K + LMD+ K+ +E + M++ A +
Sbjct: 397 LGLRVDYRKGSD-----VVAAEEIEKGLKDLMDKDSIV---HKKVQEMKEMSRNAVVDGG 448
Query: 465 SSSLMIKLLIQDI 477
SS + + LI DI
Sbjct: 449 SSLISVGKLIDDI 461
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 137/493 (27%), Positives = 224/493 (45%), Gaps = 62/493 (12%)
Query: 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVT-------TPANAARFKTVVARAM 60
+ + P GH+ ++ A+LL H + I P + K+V+A
Sbjct: 8 KNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQP 67
Query: 61 QSGLPLQLIEIQFPYQEAGVPEGCENFDMLHSTDL-VSNFFKSXXXXXXXXXXXXXXXTP 119
Q L + L E++ P QE +L S + + F +S +
Sbjct: 68 QIQL-IDLPEVEPPPQE-----------LLKSPEFYILTFLESLIPHVKATIKTIL--SN 113
Query: 120 KPSCIVSDTCYPWTVDTAARFNIPRISFH----GFSCFCLLCLYNLHTSTVQENVTSNSD 175
K +V D +D F IP F GF +L L N V ++ +
Sbjct: 114 KVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSL-MLSLKNRQIEEVFDDSDRDHQ 172
Query: 176 YLVVPGLPDQIEMTKVREKW--KDFGEMV---LAADMK-SYGIIINTFEELELEYVKEC- 228
L +PG+ +Q+ + + KD G + LA + + GII+NTF +LE +
Sbjct: 173 LLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALY 232
Query: 229 -KKTKGGKVWCLGPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSI- 286
K ++ +GP+ Q K ++ + + L WLD P SVV++C GS+
Sbjct: 233 DHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLI-----LKWLDEQPDKSVVFLCFGSMG 287
Query: 287 CNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEE--RVKGRGILILG 344
+ SQ+ E+ LGL+ S F+W N+ K++ E F E ++G+G +I G
Sbjct: 288 VSFGPSQIREIALGLKHSGVRFLW----SNSAEKKV----FPEGFLEWMELEGKG-MICG 338
Query: 345 WAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVR 404
WAPQV +L+H +IGGF++HC WNS LE + GVP++TWP+Y +Q N +V+ GV
Sbjct: 339 WAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVK--EWGVG 396
Query: 405 IGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETR 464
+G+ V G + +V E++ K + LMD+ K+ +E + M++ A +
Sbjct: 397 LGLRVDYRKGSD-----VVAAEEIEKGLKDLMDKDSIV---HKKVQEMKEMSRNAVVDGG 448
Query: 465 SSSLMIKLLIQDI 477
SS + + LI DI
Sbjct: 449 SSLISVGKLIDDI 461
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 134 bits (338), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 109/383 (28%), Positives = 172/383 (44%), Gaps = 66/383 (17%)
Query: 122 SCIVSDTCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSTVQENV-----TSNSDY 176
SC+V+D + D AA + + F L +++ ++E + D
Sbjct: 114 SCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLST--HVYIDEIREKIGVSGIQGREDE 171
Query: 177 LV--VPGLPDQIEMTKVREKWKDFGEMVLAADM----------------KSYGIIINTFE 218
L+ +PG M+KVR ++D E ++ ++ K+ + IN+FE
Sbjct: 172 LLNFIPG------MSKVR--FRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFE 223
Query: 219 ELELEYVKECKKTKGGKVWCLGPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSV 278
EL+ + K +K +GP +L + G CL WL P SV
Sbjct: 224 ELDDSLTNDLK-SKLKTYLNIGPFNLITPPPVVPNTTG---------CLQWLKERKPTSV 273
Query: 279 VYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGR 338
VY+ G++ ++++ L LEAS+ PFIW +R L E F E+ +G
Sbjct: 274 VYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVH-------LPEGFLEKTRGY 326
Query: 339 GILILGWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQV 398
G +++ WAPQ +L+H ++G F+THC WNS E ++ GVPLI P +GDQ N +++ V
Sbjct: 327 G-MVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDV 385
Query: 399 LNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKR 458
L IGVRI E GV K + IL E G+ R+ R + A R
Sbjct: 386 LEIGVRI------------EGGVFTKSGLMSCFDQILSQEKGK--KLRENLRALRETADR 431
Query: 459 ATEETRSSSLMIKLLIQDIMQQP 481
A SS+ L+ D++ +P
Sbjct: 432 AVGPKGSSTENFITLV-DLVSKP 453
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 108/368 (29%), Positives = 164/368 (44%), Gaps = 50/368 (13%)
Query: 122 SCIVSDTCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSTVQENVTSNSDYLV--- 178
+C+V+D + + D A + + LL +++T ++E S + V
Sbjct: 119 TCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLT--HVYTDLIREKTGSKEVHDVKSI 176
Query: 179 --VPGLPDQIEMTKVREKWKD----FGEMVLAADM---KSYGIIINTFEELELEYVKECK 229
+PG P+ KD F M+ + ++ + IN+F + ++
Sbjct: 177 DVLPGFPELKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIH-PLIENEL 235
Query: 230 KTKGGKVWCLGPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNL 289
+K + +GP +L Q E G CL WLD +SVVY+ GS+
Sbjct: 236 NSKFKLLLNVGPFNLTTPQRKVSDEHG---------CLEWLDQHENSSVVYISFGSVVTP 286
Query: 290 TSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQV 349
++ L LE PFIW RG L + F ER K +G I+ WAPQV
Sbjct: 287 PPHELTALAESLEECGFPFIWSFRGDPKEK-------LPKGFLERTKTKG-KIVAWAPQV 338
Query: 350 LILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEV 409
IL H S+G FLTH WNS LE I GVP+I+ P +GDQ N L VL IGV +
Sbjct: 339 EILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGV---- 394
Query: 410 PLDFGEEEEIGVLVKKEDVVKAINILM--DEGGETDDRRKRAREFQIMAKRATEETRSSS 467
+ GVL KE + KA+ + M ++GG R++ + + A +A E+ +S+
Sbjct: 395 --------DNGVLT-KESIKKALELTMSSEKGG---IMRQKIVKLKESAFKAVEQNGTSA 442
Query: 468 LMIKLLIQ 475
+ LIQ
Sbjct: 443 MDFTTLIQ 450
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 47/125 (37%), Gaps = 17/125 (13%)
Query: 265 ECLNWLDSWPPNSVVYVCLGS-ICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQ 323
E +++ S N VV LGS + N T + + L + +W G
Sbjct: 10 EXEDFVQSSGENGVVVFSLGSXVSNXTEERANVIASALAQIPQKVLWRFDGN-------- 61
Query: 324 EWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWP 383
+ G + W PQ +L HP F+TH N E I G+P + P
Sbjct: 62 --------KPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIP 113
Query: 384 LYGDQ 388
L+ DQ
Sbjct: 114 LFADQ 118
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 345 WAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVR 404
W PQ+ IL+ S F+TH S++E +S VP++ P +Q N + IV+ L +G
Sbjct: 312 WVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVE-LGLGRH 368
Query: 405 I 405
I
Sbjct: 369 I 369
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 5/120 (4%)
Query: 345 WAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVR 404
W PQ+ IL + F+TH S EG++ P+I P DQF N ++ Q L + +
Sbjct: 290 WVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADML-QGLGVARK 346
Query: 405 IGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAR--EFQIMAKRATEE 462
+ E E LV +V + + + E + R+ A E ++ A+ +E
Sbjct: 347 LATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEGGTRRAADLIEAELPARHERQE 406
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 345 WAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQF 389
W PQ +L H + + H ++L + AGVP +++P GD F
Sbjct: 299 WVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFPWAGDSF 341
>pdb|2ZAI|A Chain A, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
pdb|2ZAI|B Chain B, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
pdb|2ZAI|C Chain C, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
pdb|2ZAI|D Chain D, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
Length = 497
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 357 IGGFLTHCSWNSSLEGISAGVPLITWPLYGDQFWN--EKLIVQVLNIGVRIGV 407
+GG +T +N G A L+ P YG+++ N K+IV V N V++ V
Sbjct: 111 LGGAITRREYNGDESGRGAVTTLLPLPRYGEKYVNLYAKVIVDVSNSSVKVTV 163
>pdb|2ZAG|A Chain A, Crystal Structure Of The Semet-Substituted Soluble Domain
Of Stt3 From P. Furiosus
pdb|2ZAG|B Chain B, Crystal Structure Of The Semet-Substituted Soluble Domain
Of Stt3 From P. Furiosus
pdb|2ZAG|C Chain C, Crystal Structure Of The Semet-Substituted Soluble Domain
Of Stt3 From P. Furiosus
pdb|2ZAG|D Chain D, Crystal Structure Of The Semet-Substituted Soluble Domain
Of Stt3 From P. Furiosus
Length = 497
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 357 IGGFLTHCSWNSSLEGISAGVPLITWPLYGDQFWN--EKLIVQVLNIGVRIGV 407
+GG +T +N G A L+ P YG+++ N K+IV V N V++ V
Sbjct: 111 LGGAITRREYNGDESGRGAVTTLLPLPRYGEKYVNLYAKVIVDVSNSSVKVTV 163
>pdb|1NNV|A Chain A, The Solution Structure Of Hi1450
Length = 110
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 416 EEEIGVLVKKEDVVKAINILMDEGGETDD--------RRKRAREFQIMAKR 458
EEEIGVL+ E+ + L++E E DD R+ REF ++ K+
Sbjct: 60 EEEIGVLIDPEEYAEVWVGLVNEQDEMDDVFAKFLISHREEDREFHVIWKK 110
>pdb|2BS2|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS2|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 660
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 345 WAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYG 386
WAP VL + H S+GG T + L+G+ + W ++G
Sbjct: 361 WAP-VLPMQHYSMGGIRTDYRGEAKLKGLFSAGEAACWDMHG 401
>pdb|1QLB|A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|D Chain D, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
Length = 656
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 345 WAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYG 386
WAP VL + H S+GG T + L+G+ + W ++G
Sbjct: 361 WAP-VLPMQHYSMGGIRTDYRGEAKLKGLFSAGEAACWDMHG 401
>pdb|3TNZ|A Chain A, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) C217a, C239a Bound To Fmn And Mono-Iodotyrosine
(Mit)
pdb|3TNZ|B Chain B, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) C217a, C239a Bound To Fmn And Mono-Iodotyrosine
(Mit)
pdb|3TO0|A Chain A, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) C217a, C239a Bound To Fmn
pdb|3TO0|B Chain B, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) C217a, C239a Bound To Fmn
Length = 259
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 40 ITIVTTPANAA-RFKTVVARAMQSGLPLQLIEIQFPYQEAGVPE 82
+T+ TTP NA R + ++ R L L L+ + +P ++A VP+
Sbjct: 198 VTVTTTPLNAGPRLRVLLGRPSHEKL-LVLLPVGYPSRDATVPD 240
>pdb|1E7P|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS3|A Chain A, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS3|D Chain D, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|A Chain A, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|D Chain D, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|1E7P|G Chain G, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|J Chain J, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 656
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 345 WAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYG 386
WAP VL + H S+GG T + L+G+ + W ++G
Sbjct: 361 WAP-VLPMQHYSMGGIRTDYRGEAKLKGLFSAGEAACWDMHG 401
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 345 WAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQ 388
W P +L+H LTH + + LE +AGVPL+ P + +
Sbjct: 288 WIPFHSVLAHAR--ACLTHGTTGAVLEAFAAGVPLVLVPHFATE 329
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,333,208
Number of Sequences: 62578
Number of extensions: 584990
Number of successful extensions: 1404
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1372
Number of HSP's gapped (non-prelim): 26
length of query: 488
length of database: 14,973,337
effective HSP length: 103
effective length of query: 385
effective length of database: 8,527,803
effective search space: 3283204155
effective search space used: 3283204155
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)