Query 011339
Match_columns 488
No_of_seqs 118 out of 1219
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 00:15:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011339.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011339hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02534 UDP-glycosyltransfera 100.0 2.4E-67 5.1E-72 532.3 47.1 473 8-481 7-488 (491)
2 PLN02863 UDP-glucoronosyl/UDP- 100.0 5E-65 1.1E-69 516.5 45.9 459 1-481 1-473 (477)
3 PLN03007 UDP-glucosyltransfera 100.0 2.8E-64 6.1E-69 515.4 47.5 461 8-479 4-480 (482)
4 PLN02208 glycosyltransferase f 100.0 9.2E-63 2E-67 495.4 43.8 428 8-480 3-440 (442)
5 PLN02410 UDP-glucoronosyl/UDP- 100.0 2E-62 4.4E-67 494.1 44.0 433 1-479 1-450 (451)
6 PLN02992 coniferyl-alcohol glu 100.0 2.1E-62 4.6E-67 494.2 43.6 432 8-479 4-469 (481)
7 PLN02764 glycosyltransferase f 100.0 1.3E-61 2.9E-66 484.2 45.5 429 8-481 4-447 (453)
8 PLN02210 UDP-glucosyl transfer 100.0 1.2E-61 2.5E-66 490.5 42.6 440 1-479 1-455 (456)
9 PLN00164 glucosyltransferase; 100.0 2.5E-61 5.5E-66 491.1 44.6 443 8-481 2-475 (480)
10 PLN02555 limonoid glucosyltran 100.0 3.6E-61 7.7E-66 486.7 44.9 449 1-480 1-470 (480)
11 PLN00414 glycosyltransferase f 100.0 2.1E-61 4.6E-66 486.0 43.1 430 8-480 3-441 (446)
12 PLN02173 UDP-glucosyl transfer 100.0 3.5E-61 7.5E-66 482.9 43.7 426 8-479 4-448 (449)
13 PLN02670 transferase, transfer 100.0 4E-61 8.7E-66 484.6 44.0 447 8-481 5-467 (472)
14 PLN03015 UDP-glucosyl transfer 100.0 5.4E-61 1.2E-65 481.2 44.0 436 8-477 2-466 (470)
15 PLN02207 UDP-glycosyltransfera 100.0 1E-60 2.2E-65 481.2 44.1 444 8-479 2-465 (468)
16 PLN02562 UDP-glycosyltransfera 100.0 2.8E-60 6E-65 480.0 43.1 421 8-478 5-448 (448)
17 PLN02554 UDP-glycosyltransfera 100.0 6.2E-60 1.3E-64 482.8 43.4 447 9-481 2-480 (481)
18 PLN03004 UDP-glycosyltransfera 100.0 4.2E-60 9.2E-65 475.3 40.0 428 9-468 3-450 (451)
19 PLN02448 UDP-glycosyltransfera 100.0 1.5E-59 3.3E-64 478.3 44.1 433 8-480 9-458 (459)
20 PLN02152 indole-3-acetate beta 100.0 2.5E-59 5.4E-64 470.2 42.7 433 8-477 2-454 (455)
21 PLN02167 UDP-glycosyltransfera 100.0 7.1E-59 1.5E-63 474.3 42.9 452 8-481 2-474 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 1.2E-47 2.6E-52 393.4 31.8 404 7-481 18-468 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.6E-48 3.5E-53 406.2 6.6 395 11-480 2-444 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 6.2E-43 1.3E-47 353.0 29.9 376 15-477 1-389 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 2E-42 4.4E-47 350.7 23.5 367 10-458 1-387 (401)
26 COG1819 Glycosyl transferases, 100.0 5.2E-41 1.1E-45 335.5 21.9 390 9-481 1-402 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 3.3E-39 7.2E-44 336.2 17.1 393 9-458 5-438 (496)
28 PRK12446 undecaprenyldiphospho 100.0 1.3E-27 2.8E-32 236.0 25.0 324 9-451 1-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 1.2E-24 2.6E-29 213.6 24.7 306 10-435 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 7.7E-24 1.7E-28 206.7 25.3 326 10-452 1-338 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 6.9E-22 1.5E-26 193.8 23.3 304 11-439 1-315 (321)
32 PRK00726 murG undecaprenyldiph 99.8 4.4E-18 9.5E-23 169.8 30.1 324 9-448 1-334 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 3.2E-17 6.9E-22 163.1 24.8 327 11-449 1-335 (350)
34 TIGR01133 murG undecaprenyldip 99.7 6.4E-16 1.4E-20 153.6 25.6 312 10-440 1-323 (348)
35 COG4671 Predicted glycosyl tra 99.7 2.6E-15 5.7E-20 139.9 22.3 338 7-439 7-366 (400)
36 TIGR00215 lpxB lipid-A-disacch 99.7 2.2E-15 4.7E-20 151.1 23.3 353 9-474 5-383 (385)
37 PRK13609 diacylglycerol glucos 99.7 2.9E-14 6.2E-19 143.6 27.9 355 8-480 3-372 (380)
38 TIGR03590 PseG pseudaminic aci 99.7 2E-14 4.4E-19 137.6 23.1 256 19-394 13-278 (279)
39 PRK00025 lpxB lipid-A-disaccha 99.6 1.5E-13 3.3E-18 138.3 22.9 334 9-455 1-358 (380)
40 PRK13608 diacylglycerol glucos 99.6 7.1E-13 1.5E-17 133.6 26.9 148 274-452 200-352 (391)
41 TIGR03492 conserved hypothetic 99.5 1.4E-11 3E-16 123.8 25.6 334 19-439 6-365 (396)
42 PLN02605 monogalactosyldiacylg 99.5 1.6E-11 3.4E-16 123.7 24.5 136 274-438 204-347 (382)
43 PF04101 Glyco_tran_28_C: Glyc 99.5 1.7E-15 3.7E-20 134.0 -4.2 136 278-439 1-145 (167)
44 PLN02871 UDP-sulfoquinovose:DA 99.4 3.6E-10 7.8E-15 116.8 29.1 142 278-453 264-415 (465)
45 cd03814 GT1_like_2 This family 99.3 3.5E-09 7.5E-14 105.1 31.7 329 11-452 1-346 (364)
46 PF03033 Glyco_transf_28: Glyc 99.3 2E-12 4.4E-17 110.5 6.0 127 12-154 1-134 (139)
47 cd03823 GT1_ExpE7_like This fa 99.3 9.1E-09 2E-13 101.8 30.7 93 337-451 242-342 (359)
48 COG3980 spsG Spore coat polysa 99.3 4.8E-10 1E-14 102.0 19.0 293 10-452 1-303 (318)
49 cd03794 GT1_wbuB_like This fam 99.2 1.1E-08 2.4E-13 102.1 29.2 149 276-454 219-381 (394)
50 cd03808 GT1_cap1E_like This fa 99.2 3.8E-08 8.2E-13 97.0 31.1 328 11-452 1-343 (359)
51 cd04962 GT1_like_5 This family 99.2 4.2E-08 9E-13 98.2 31.2 351 10-477 1-368 (371)
52 cd03800 GT1_Sucrose_synthase T 99.2 1.9E-08 4.2E-13 101.5 28.8 94 337-452 282-382 (398)
53 PRK10307 putative glycosyl tra 99.2 1.3E-07 2.8E-12 96.4 33.3 114 338-478 284-406 (412)
54 cd03818 GT1_ExpC_like This fam 99.2 6.3E-08 1.4E-12 98.1 30.7 93 337-451 280-379 (396)
55 cd03801 GT1_YqgM_like This fam 99.2 1.2E-07 2.7E-12 93.5 31.6 331 11-450 1-353 (374)
56 PRK05749 3-deoxy-D-manno-octul 99.1 7.9E-08 1.7E-12 98.3 29.8 85 349-453 314-403 (425)
57 cd03817 GT1_UGDG_like This fam 99.1 1.2E-07 2.6E-12 94.2 29.6 96 337-455 258-360 (374)
58 cd03816 GT1_ALG1_like This fam 99.1 2.2E-07 4.7E-12 94.6 31.2 357 8-453 2-399 (415)
59 cd03820 GT1_amsD_like This fam 99.0 2.6E-07 5.6E-12 90.6 27.4 96 337-454 234-335 (348)
60 cd03798 GT1_wlbH_like This fam 99.0 1.5E-06 3.3E-11 85.9 33.2 318 19-439 13-345 (377)
61 cd03795 GT1_like_4 This family 99.0 8E-07 1.7E-11 88.2 30.8 150 278-455 192-349 (357)
62 cd03825 GT1_wcfI_like This fam 99.0 4.4E-07 9.5E-12 90.3 28.4 112 337-477 243-362 (365)
63 cd03805 GT1_ALG2_like This fam 99.0 9.6E-07 2.1E-11 89.1 30.7 93 337-452 279-378 (392)
64 PF04007 DUF354: Protein of un 99.0 1.3E-06 2.9E-11 84.8 28.3 301 10-436 1-308 (335)
65 TIGR03449 mycothiol_MshA UDP-N 98.9 3.1E-06 6.8E-11 85.9 31.9 94 337-452 282-382 (405)
66 cd03819 GT1_WavL_like This fam 98.9 2.7E-06 5.9E-11 84.4 30.8 156 277-455 185-348 (355)
67 PRK14089 ipid-A-disaccharide s 98.9 2E-07 4.3E-12 91.3 21.7 154 277-456 168-332 (347)
68 cd03799 GT1_amsK_like This is 98.9 2E-06 4.4E-11 85.2 29.1 93 337-451 235-340 (355)
69 PRK09922 UDP-D-galactose:(gluc 98.9 2.6E-06 5.6E-11 85.1 28.3 165 278-479 181-358 (359)
70 cd03822 GT1_ecORF704_like This 98.9 2.8E-06 6.1E-11 84.3 28.6 93 337-452 246-348 (366)
71 cd05844 GT1_like_7 Glycosyltra 98.9 3.6E-06 7.8E-11 84.0 29.4 93 337-451 244-349 (367)
72 cd03821 GT1_Bme6_like This fam 98.8 6.5E-06 1.4E-10 81.6 29.9 92 337-452 261-359 (375)
73 cd03811 GT1_WabH_like This fam 98.8 1.3E-06 2.8E-11 85.6 24.1 81 337-439 245-333 (353)
74 cd03807 GT1_WbnK_like This fam 98.8 1.5E-05 3.3E-10 78.6 31.8 79 338-440 251-334 (365)
75 cd03796 GT1_PIG-A_like This fa 98.8 1.2E-05 2.6E-10 81.5 30.8 165 276-478 192-366 (398)
76 TIGR00236 wecB UDP-N-acetylglu 98.8 1.3E-06 2.8E-11 87.4 23.1 318 10-439 1-335 (365)
77 cd03812 GT1_CapH_like This fam 98.8 9.5E-06 2E-10 80.6 27.4 84 337-443 248-336 (358)
78 TIGR03087 stp1 sugar transfera 98.7 4.2E-06 9.1E-11 84.8 25.0 92 337-452 279-376 (397)
79 cd04955 GT1_like_6 This family 98.7 3E-05 6.4E-10 77.1 29.2 107 337-476 247-361 (363)
80 COG1519 KdtA 3-deoxy-D-manno-o 98.7 4.5E-05 9.7E-10 74.6 28.8 326 12-458 51-406 (419)
81 TIGR02472 sucr_P_syn_N sucrose 98.6 0.00014 3E-09 74.7 32.8 113 337-476 316-437 (439)
82 TIGR02149 glgA_Coryne glycogen 98.6 0.00018 3.9E-09 72.5 32.9 116 339-477 261-384 (388)
83 cd03786 GT1_UDP-GlcNAc_2-Epime 98.6 1.2E-05 2.5E-10 80.4 22.9 136 275-439 197-338 (363)
84 PRK15427 colanic acid biosynth 98.6 0.00016 3.4E-09 73.5 31.1 113 337-478 278-404 (406)
85 TIGR03088 stp2 sugar transfera 98.6 0.00013 2.8E-09 73.2 30.2 111 338-477 255-370 (374)
86 cd03802 GT1_AviGT4_like This f 98.6 8.5E-05 1.8E-09 73.0 28.0 128 279-438 173-308 (335)
87 cd04951 GT1_WbdM_like This fam 98.6 6.6E-05 1.4E-09 74.4 26.9 79 337-439 244-327 (360)
88 PRK01021 lpxB lipid-A-disaccha 98.5 1.8E-05 3.9E-10 81.6 22.2 215 218-478 369-604 (608)
89 PLN02275 transferase, transfer 98.5 0.00063 1.4E-08 68.3 33.0 75 338-436 286-371 (371)
90 PRK15179 Vi polysaccharide bio 98.5 0.00038 8.2E-09 74.6 32.6 95 337-451 573-672 (694)
91 cd03809 GT1_mtfB_like This fam 98.5 1.9E-05 4.2E-10 78.2 21.7 91 336-450 251-348 (365)
92 TIGR02468 sucrsPsyn_pln sucros 98.5 0.0006 1.3E-08 75.1 33.0 96 337-452 547-651 (1050)
93 PF02684 LpxB: Lipid-A-disacch 98.5 7.7E-05 1.7E-09 73.7 24.0 215 218-468 141-366 (373)
94 TIGR03568 NeuC_NnaA UDP-N-acet 98.4 0.00011 2.4E-09 73.4 23.5 131 275-437 200-338 (365)
95 cd03792 GT1_Trehalose_phosphor 98.4 0.00071 1.5E-08 67.9 28.8 111 337-478 251-370 (372)
96 cd03804 GT1_wbaZ_like This fam 98.4 8.1E-05 1.8E-09 73.9 21.5 137 280-450 198-339 (351)
97 cd03806 GT1_ALG11_like This fa 98.3 0.0016 3.4E-08 66.5 29.3 80 337-439 304-393 (419)
98 PLN02949 transferase, transfer 98.3 0.0079 1.7E-07 61.9 34.0 113 337-479 334-456 (463)
99 PF02350 Epimerase_2: UDP-N-ac 98.2 1.3E-05 2.8E-10 79.2 12.6 249 104-438 53-318 (346)
100 TIGR02470 sucr_synth sucrose s 98.2 0.0085 1.8E-07 64.7 34.4 93 337-449 618-724 (784)
101 PLN02846 digalactosyldiacylgly 98.2 0.0013 2.9E-08 67.0 27.1 73 342-439 288-364 (462)
102 PRK00654 glgA glycogen synthas 98.2 0.0026 5.6E-08 65.9 29.7 133 278-437 283-427 (466)
103 COG0763 LpxB Lipid A disacchar 98.2 0.00093 2E-08 64.9 23.7 226 217-477 143-379 (381)
104 KOG3349 Predicted glycosyltran 98.2 6.6E-06 1.4E-10 68.0 6.9 116 278-406 5-133 (170)
105 TIGR02095 glgA glycogen/starch 98.1 0.0063 1.4E-07 63.2 29.6 129 278-437 292-436 (473)
106 cd03791 GT1_Glycogen_synthase_ 98.0 0.0038 8.3E-08 64.8 26.8 84 337-438 350-442 (476)
107 cd04949 GT1_gtfA_like This fam 98.0 0.0011 2.4E-08 66.3 21.4 100 337-455 260-362 (372)
108 cd04950 GT1_like_1 Glycosyltra 98.0 0.021 4.5E-07 57.3 29.8 79 337-439 253-341 (373)
109 cd03813 GT1_like_3 This family 98.0 0.0019 4.1E-08 67.1 22.9 93 337-451 353-455 (475)
110 TIGR02918 accessory Sec system 97.9 0.0077 1.7E-07 62.7 26.3 102 337-454 375-482 (500)
111 PLN00142 sucrose synthase 97.9 0.0099 2.2E-07 64.3 27.1 70 360-449 670-747 (815)
112 PLN02316 synthase/transferase 97.8 0.089 1.9E-06 58.6 35.5 115 338-476 900-1030(1036)
113 cd04946 GT1_AmsK_like This fam 97.8 0.00055 1.2E-08 69.6 15.7 153 277-453 230-392 (407)
114 COG0381 WecB UDP-N-acetylgluco 97.8 0.0085 1.9E-07 58.5 22.1 326 8-439 2-342 (383)
115 PF13844 Glyco_transf_41: Glyc 97.7 0.00056 1.2E-08 69.1 13.3 152 274-449 282-441 (468)
116 PF00534 Glycos_transf_1: Glyc 97.7 0.00041 8.8E-09 61.1 11.1 93 337-451 72-171 (172)
117 PRK15484 lipopolysaccharide 1, 97.5 0.0046 9.9E-08 62.2 17.1 114 337-479 256-377 (380)
118 PRK15490 Vi polysaccharide bio 97.5 0.076 1.7E-06 55.1 24.9 116 337-481 454-577 (578)
119 PRK10125 putative glycosyl tra 97.4 0.092 2E-06 53.3 25.1 37 10-46 1-39 (405)
120 cd01635 Glycosyltransferase_GT 97.4 0.015 3.3E-07 52.9 17.7 49 337-387 160-216 (229)
121 COG5017 Uncharacterized conser 97.4 0.00048 1E-08 56.1 6.2 108 279-406 2-122 (161)
122 PLN02501 digalactosyldiacylgly 97.4 0.26 5.6E-06 52.4 27.4 76 339-439 602-682 (794)
123 COG1817 Uncharacterized protei 97.2 0.13 2.9E-06 48.6 20.7 106 18-150 8-113 (346)
124 PF13692 Glyco_trans_1_4: Glyc 97.2 0.0012 2.6E-08 55.5 6.8 127 278-438 3-135 (135)
125 TIGR02193 heptsyl_trn_I lipopo 96.9 0.063 1.4E-06 52.5 17.4 43 11-53 1-45 (319)
126 PF13477 Glyco_trans_4_2: Glyc 96.7 0.019 4.1E-07 48.4 10.1 101 11-147 1-105 (139)
127 KOG4626 O-linked N-acetylgluco 96.4 0.14 3E-06 52.7 15.3 127 274-406 756-888 (966)
128 PRK10422 lipopolysaccharide co 96.3 0.26 5.6E-06 49.0 17.5 107 8-146 4-113 (352)
129 PRK09814 beta-1,6-galactofuran 96.3 0.02 4.2E-07 56.5 9.3 110 337-475 206-331 (333)
130 PF06722 DUF1205: Protein of u 96.3 0.0044 9.5E-08 48.7 3.4 66 260-329 24-94 (97)
131 TIGR02201 heptsyl_trn_III lipo 96.0 0.37 8E-06 47.7 16.8 105 11-146 1-108 (344)
132 PRK14099 glycogen synthase; Pr 96.0 2.5 5.5E-05 44.0 31.0 39 8-46 2-46 (485)
133 PRK14098 glycogen synthase; Pr 94.9 0.72 1.6E-05 48.0 14.7 111 337-477 361-483 (489)
134 PF13579 Glyco_trans_4_4: Glyc 94.7 0.039 8.4E-07 47.2 4.2 94 25-148 6-103 (160)
135 PRK10017 colanic acid biosynth 94.7 1.6 3.4E-05 44.5 16.2 163 268-456 226-407 (426)
136 COG0859 RfaF ADP-heptose:LPS h 94.5 3.1 6.7E-05 41.0 17.5 105 9-146 1-107 (334)
137 COG3914 Spy Predicted O-linked 94.3 0.29 6.3E-06 50.1 9.7 121 274-405 427-560 (620)
138 PRK10964 ADP-heptose:LPS hepto 94.2 4.4 9.6E-05 39.6 17.9 43 10-52 1-45 (322)
139 PF12000 Glyco_trans_4_3: Gkyc 94.1 0.53 1.1E-05 41.2 9.8 94 35-148 1-95 (171)
140 cd03789 GT1_LPS_heptosyltransf 93.9 6.1 0.00013 37.6 18.0 43 11-53 1-45 (279)
141 PF08660 Alg14: Oligosaccharid 93.5 0.87 1.9E-05 39.9 10.1 114 15-147 3-127 (170)
142 PF13524 Glyco_trans_1_2: Glyc 93.3 0.59 1.3E-05 36.1 8.0 83 363-474 9-91 (92)
143 PHA01633 putative glycosyl tra 93.3 2.5 5.4E-05 41.5 14.0 85 337-438 200-307 (335)
144 PF06258 Mito_fiss_Elm1: Mitoc 92.8 10 0.00022 36.9 19.8 171 208-408 97-283 (311)
145 cd02067 B12-binding B12 bindin 92.4 2.3 4.9E-05 34.7 10.7 47 11-57 1-47 (119)
146 PHA01630 putative group 1 glyc 92.2 2.6 5.7E-05 41.4 12.6 39 345-385 197-242 (331)
147 PRK02261 methylaspartate mutas 91.5 0.93 2E-05 38.2 7.4 51 8-58 2-52 (137)
148 TIGR02195 heptsyl_trn_II lipop 91.2 16 0.00035 35.8 19.7 102 11-146 1-105 (334)
149 TIGR02919 accessory Sec system 90.6 5.6 0.00012 40.7 13.4 125 275-439 282-412 (438)
150 PLN02939 transferase, transfer 89.3 14 0.0003 41.3 15.7 84 337-437 836-930 (977)
151 PF13439 Glyco_transf_4: Glyco 89.2 0.5 1.1E-05 40.9 4.1 28 19-46 11-38 (177)
152 TIGR03713 acc_sec_asp1 accesso 89.0 5.7 0.00012 41.7 12.4 90 338-454 409-504 (519)
153 TIGR02400 trehalose_OtsA alpha 88.2 2.5 5.4E-05 43.6 9.0 104 343-478 341-455 (456)
154 TIGR00715 precor6x_red precorr 85.7 5.9 0.00013 37.3 9.3 91 10-147 1-98 (256)
155 PF02951 GSH-S_N: Prokaryotic 85.7 1.3 2.9E-05 36.1 4.3 37 10-46 1-40 (119)
156 COG2185 Sbm Methylmalonyl-CoA 84.6 11 0.00024 31.7 9.3 43 8-50 11-53 (143)
157 cd03788 GT1_TPS Trehalose-6-Ph 84.2 4.1 8.8E-05 42.1 8.2 104 342-477 345-459 (460)
158 cd02070 corrinoid_protein_B12- 83.7 11 0.00024 34.0 9.9 50 9-58 82-131 (201)
159 PRK10916 ADP-heptose:LPS hepto 83.6 8.5 0.00018 38.0 10.0 103 10-146 1-106 (348)
160 PRK13933 stationary phase surv 83.0 8.3 0.00018 36.1 8.9 39 10-50 1-39 (253)
161 PRK06849 hypothetical protein; 82.5 12 0.00027 37.6 10.7 36 8-47 3-38 (389)
162 PRK13932 stationary phase surv 82.4 12 0.00026 35.2 9.6 41 8-50 4-44 (257)
163 PF02441 Flavoprotein: Flavopr 82.3 2.3 4.9E-05 35.4 4.5 45 10-55 1-45 (129)
164 PRK05647 purN phosphoribosylgl 82.0 16 0.00035 33.0 10.1 87 9-129 1-89 (200)
165 TIGR02370 pyl_corrinoid methyl 81.4 15 0.00033 33.0 9.8 51 8-58 83-133 (197)
166 cd01424 MGS_CPS_II Methylglyox 81.2 15 0.00034 29.3 8.9 84 21-146 10-100 (110)
167 COG0496 SurE Predicted acid ph 80.6 13 0.00029 34.6 9.1 113 10-150 1-126 (252)
168 PF02310 B12-binding: B12 bind 79.8 9.6 0.00021 30.9 7.4 48 10-57 1-48 (121)
169 PF02142 MGS: MGS-like domain 79.3 2.8 6.1E-05 32.7 3.8 84 26-145 2-94 (95)
170 cd02071 MM_CoA_mut_B12_BD meth 78.4 35 0.00077 27.8 11.2 45 11-55 1-45 (122)
171 COG1618 Predicted nucleotide k 78.0 5.8 0.00013 34.2 5.5 39 8-46 4-43 (179)
172 smart00851 MGS MGS-like domain 78.0 15 0.00033 28.1 7.6 79 26-145 2-89 (90)
173 COG4370 Uncharacterized protei 77.1 8.7 0.00019 36.5 6.8 80 348-450 305-387 (412)
174 PF00551 Formyl_trans_N: Formy 77.0 23 0.00051 31.2 9.5 104 10-148 1-108 (181)
175 PLN03063 alpha,alpha-trehalose 76.4 11 0.00024 41.9 8.6 102 349-481 370-479 (797)
176 cd02069 methionine_synthase_B1 75.7 30 0.00064 31.6 10.0 51 8-58 87-137 (213)
177 COG0438 RfaG Glycosyltransfera 75.3 74 0.0016 30.0 17.0 81 337-439 256-343 (381)
178 COG0003 ArsA Predicted ATPase 74.2 33 0.00071 33.5 10.3 41 9-49 1-42 (322)
179 PF01012 ETF: Electron transfe 73.5 8.8 0.00019 33.3 5.8 110 11-149 1-122 (164)
180 PF07429 Glyco_transf_56: 4-al 73.1 54 0.0012 32.1 11.2 83 337-437 244-332 (360)
181 PRK08057 cobalt-precorrin-6x r 73.1 22 0.00047 33.3 8.6 90 9-147 2-98 (248)
182 PRK12342 hypothetical protein; 72.9 42 0.0009 31.5 10.3 42 107-150 98-145 (254)
183 PRK14098 glycogen synthase; Pr 72.7 6.2 0.00013 41.2 5.4 39 8-46 4-48 (489)
184 cd01974 Nitrogenase_MoFe_beta 72.5 49 0.0011 33.9 11.8 36 107-147 366-401 (435)
185 COG3660 Predicted nucleoside-d 72.0 89 0.0019 29.4 16.4 96 278-382 164-271 (329)
186 COG2894 MinD Septum formation 71.8 19 0.00041 32.8 7.3 38 9-46 1-40 (272)
187 cd01124 KaiC KaiC is a circadi 71.5 18 0.00038 31.8 7.4 46 12-57 2-47 (187)
188 PRK13789 phosphoribosylamine-- 71.5 14 0.00031 37.6 7.6 34 8-46 3-36 (426)
189 PF01975 SurE: Survival protei 71.1 6.1 0.00013 35.5 4.2 41 10-51 1-41 (196)
190 PF06925 MGDG_synth: Monogalac 70.9 12 0.00026 32.6 6.0 44 105-150 76-125 (169)
191 PF04127 DFP: DNA / pantothena 70.2 4.5 9.8E-05 36.0 3.2 40 8-47 2-53 (185)
192 PRK13935 stationary phase surv 69.8 63 0.0014 30.3 10.7 39 10-50 1-39 (253)
193 PRK00346 surE 5'(3')-nucleotid 69.6 40 0.00086 31.6 9.4 39 10-50 1-39 (250)
194 PF02571 CbiJ: Precorrin-6x re 69.2 26 0.00055 32.9 8.1 38 107-147 55-99 (249)
195 cd01715 ETF_alpha The electron 69.0 67 0.0014 27.9 10.4 43 106-150 71-116 (168)
196 PRK06988 putative formyltransf 68.0 46 0.00099 32.4 9.9 33 9-46 2-34 (312)
197 PRK01077 cobyrinic acid a,c-di 67.8 62 0.0013 33.3 11.4 39 8-46 2-41 (451)
198 PRK08305 spoVFB dipicolinate s 67.6 11 0.00024 33.8 5.0 42 8-49 4-45 (196)
199 cd03793 GT1_Glycogen_synthase_ 67.5 16 0.00034 38.5 6.8 80 347-438 467-552 (590)
200 TIGR02015 BchY chlorophyllide 67.5 54 0.0012 33.4 10.7 31 11-46 287-317 (422)
201 cd01980 Chlide_reductase_Y Chl 66.8 47 0.001 33.8 10.2 32 112-148 344-375 (416)
202 PRK14501 putative bifunctional 66.7 78 0.0017 34.9 12.5 112 341-480 345-463 (726)
203 PRK07313 phosphopantothenoylcy 66.4 8.9 0.00019 34.0 4.2 44 9-53 1-44 (182)
204 PF12146 Hydrolase_4: Putative 66.4 11 0.00024 28.2 4.2 36 10-45 16-51 (79)
205 COG1484 DnaC DNA replication p 66.3 11 0.00024 35.4 5.2 47 8-54 104-150 (254)
206 PF04413 Glycos_transf_N: 3-De 65.9 25 0.00054 31.3 7.1 99 12-149 23-126 (186)
207 PRK03359 putative electron tra 65.7 64 0.0014 30.4 10.0 42 107-150 101-148 (256)
208 cd01423 MGS_CPS_I_III Methylgl 64.9 71 0.0015 25.7 9.1 87 22-146 11-106 (116)
209 PF05159 Capsule_synth: Capsul 64.6 41 0.00089 31.8 8.8 43 339-384 184-226 (269)
210 TIGR03446 mycothiol_Mca mycoth 64.5 75 0.0016 30.4 10.4 19 106-126 109-127 (283)
211 cd01965 Nitrogenase_MoFe_beta_ 63.9 68 0.0015 32.7 10.8 36 107-147 360-395 (428)
212 PRK06029 3-octaprenyl-4-hydrox 63.9 12 0.00026 33.3 4.6 44 9-53 1-45 (185)
213 COG1703 ArgK Putative periplas 63.6 22 0.00047 34.0 6.4 43 8-50 50-92 (323)
214 PRK06067 flagellar accessory p 62.9 29 0.00063 32.0 7.3 47 11-57 27-73 (234)
215 TIGR00460 fmt methionyl-tRNA f 62.1 57 0.0012 31.8 9.3 32 10-46 1-32 (313)
216 cd01121 Sms Sms (bacterial rad 62.0 1.1E+02 0.0023 30.7 11.4 42 12-53 85-126 (372)
217 cd01985 ETF The electron trans 61.2 53 0.0011 28.9 8.3 39 107-147 80-121 (181)
218 COG2910 Putative NADH-flavin r 60.8 16 0.00035 32.3 4.6 33 10-46 1-33 (211)
219 PRK06732 phosphopantothenate-- 60.4 13 0.00028 34.4 4.3 37 10-46 1-49 (229)
220 cd03466 Nitrogenase_NifN_2 Nit 60.2 94 0.002 31.8 11.0 36 107-147 361-396 (429)
221 TIGR01501 MthylAspMutase methy 60.1 45 0.00097 27.9 7.0 48 9-56 1-48 (134)
222 COG1066 Sms Predicted ATP-depe 59.7 73 0.0016 32.0 9.4 43 11-54 95-137 (456)
223 PRK05920 aromatic acid decarbo 59.4 16 0.00036 33.0 4.7 45 8-53 2-46 (204)
224 TIGR02655 circ_KaiC circadian 58.9 1E+02 0.0022 32.1 11.1 49 10-58 264-312 (484)
225 PRK10867 signal recognition pa 58.8 1E+02 0.0022 31.6 10.7 43 10-52 101-144 (433)
226 cd00532 MGS-like MGS-like doma 58.7 81 0.0018 25.2 8.3 85 22-146 10-104 (112)
227 PF06506 PrpR_N: Propionate ca 58.5 16 0.00035 32.1 4.5 70 354-438 32-124 (176)
228 PRK06249 2-dehydropantoate 2-r 58.3 14 0.00029 36.0 4.4 35 8-47 4-38 (313)
229 PF01210 NAD_Gly3P_dh_N: NAD-d 58.0 8 0.00017 33.3 2.4 32 11-47 1-32 (157)
230 PF00448 SRP54: SRP54-type pro 57.4 1.2E+02 0.0027 27.1 10.1 39 12-50 4-42 (196)
231 PRK07313 phosphopantothenoylcy 57.2 1.4E+02 0.003 26.4 10.4 60 376-437 113-179 (182)
232 COG0541 Ffh Signal recognition 56.9 1.1E+02 0.0024 31.0 10.2 50 8-57 99-148 (451)
233 PF01075 Glyco_transf_9: Glyco 56.9 40 0.00087 31.2 7.2 99 275-382 104-208 (247)
234 KOG2941 Beta-1,4-mannosyltrans 56.4 2.1E+02 0.0045 28.2 29.9 60 8-73 11-70 (444)
235 PF09314 DUF1972: Domain of un 56.0 93 0.002 27.7 8.7 41 9-49 1-46 (185)
236 TIGR00640 acid_CoA_mut_C methy 55.6 1.2E+02 0.0026 25.2 12.0 45 8-52 1-45 (132)
237 PRK14478 nitrogenase molybdenu 55.1 1.2E+02 0.0025 31.6 10.8 34 108-146 383-416 (475)
238 COG2874 FlaH Predicted ATPases 54.4 50 0.0011 30.1 6.7 89 18-131 37-134 (235)
239 PRK13195 pyrrolidone-carboxyla 53.7 22 0.00048 32.6 4.6 34 9-42 1-39 (222)
240 COG1748 LYS9 Saccharopine dehy 53.4 88 0.0019 31.4 9.0 96 9-150 1-101 (389)
241 PRK09620 hypothetical protein; 52.1 26 0.00056 32.4 4.9 39 8-46 2-52 (229)
242 TIGR01286 nifK nitrogenase mol 51.8 1.2E+02 0.0027 31.8 10.3 36 107-147 426-461 (515)
243 PF04464 Glyphos_transf: CDP-G 51.7 23 0.00049 35.3 4.8 111 337-468 251-362 (369)
244 PRK11823 DNA repair protein Ra 51.6 1.6E+02 0.0035 30.3 11.0 43 12-54 83-125 (446)
245 TIGR03880 KaiC_arch_3 KaiC dom 51.5 1.9E+02 0.0041 26.2 11.2 100 11-130 18-117 (224)
246 PRK13982 bifunctional SbtC-lik 51.3 2.2E+02 0.0049 29.5 11.8 151 275-437 70-247 (475)
247 PF03446 NAD_binding_2: NAD bi 50.5 17 0.00037 31.5 3.2 32 9-45 1-32 (163)
248 PRK00784 cobyric acid synthase 50.4 1.3E+02 0.0029 31.3 10.3 34 12-45 5-39 (488)
249 cd02065 B12-binding_like B12 b 50.4 63 0.0014 26.0 6.6 45 12-56 2-46 (125)
250 PRK08229 2-dehydropantoate 2-r 50.2 22 0.00048 34.9 4.4 33 9-46 2-34 (341)
251 cd01968 Nitrogenase_NifE_I Nit 50.1 1.8E+02 0.0039 29.5 11.1 35 108-147 346-380 (410)
252 PRK13196 pyrrolidone-carboxyla 50.0 30 0.00064 31.5 4.8 28 9-36 1-30 (211)
253 PRK12921 2-dehydropantoate 2-r 49.8 28 0.00062 33.4 5.1 32 10-46 1-32 (305)
254 TIGR00639 PurN phosphoribosylg 49.6 1.9E+02 0.0041 25.8 11.3 87 10-130 1-89 (190)
255 PF02585 PIG-L: GlcNAc-PI de-N 49.6 1.4E+02 0.0031 24.2 9.1 23 104-128 86-108 (128)
256 PF14336 DUF4392: Domain of un 48.8 41 0.0009 32.3 5.8 34 26-59 65-98 (291)
257 cd01977 Nitrogenase_VFe_alpha 48.8 1.3E+02 0.0029 30.5 9.9 31 112-147 352-382 (415)
258 TIGR02852 spore_dpaB dipicolin 48.6 24 0.00051 31.5 3.8 37 11-47 2-38 (187)
259 COG2085 Predicted dinucleotide 48.6 31 0.00067 31.2 4.6 34 9-47 1-34 (211)
260 PF03808 Glyco_tran_WecB: Glyc 48.5 1.8E+02 0.004 25.3 10.5 87 210-315 50-136 (172)
261 PRK11889 flhF flagellar biosyn 48.4 1.6E+02 0.0036 29.8 9.9 41 9-49 241-281 (436)
262 PRK06522 2-dehydropantoate 2-r 48.3 25 0.00053 33.8 4.4 31 10-45 1-31 (304)
263 TIGR03877 thermo_KaiC_1 KaiC d 47.8 1.9E+02 0.0042 26.6 10.1 48 10-57 22-69 (237)
264 KOG0780 Signal recognition par 47.8 86 0.0019 31.3 7.6 46 10-55 102-147 (483)
265 TIGR01285 nifN nitrogenase mol 47.8 1.3E+02 0.0027 30.9 9.5 35 108-147 363-397 (432)
266 cd01122 GP4d_helicase GP4d_hel 47.7 21 0.00046 33.7 3.7 45 11-55 32-77 (271)
267 COG4088 Predicted nucleotide k 47.7 25 0.00054 31.8 3.7 38 9-46 1-38 (261)
268 PLN02470 acetolactate synthase 47.6 53 0.0012 35.1 7.1 92 282-383 2-109 (585)
269 PRK05595 replicative DNA helic 47.5 1.4E+02 0.0031 30.6 10.0 43 12-54 204-247 (444)
270 PF04244 DPRP: Deoxyribodipyri 47.5 41 0.00089 30.9 5.4 25 22-46 47-71 (224)
271 PRK02797 4-alpha-L-fucosyltran 47.4 2.8E+02 0.006 27.0 13.2 81 338-436 206-292 (322)
272 PRK13982 bifunctional SbtC-lik 47.2 29 0.00063 35.8 4.7 40 8-47 255-306 (475)
273 TIGR01283 nifE nitrogenase mol 47.1 2.5E+02 0.0055 28.9 11.7 36 107-147 384-419 (456)
274 PRK13931 stationary phase surv 47.1 1.1E+02 0.0024 28.8 8.3 26 26-51 16-44 (261)
275 cd07037 TPP_PYR_MenD Pyrimidin 46.7 62 0.0013 28.0 6.1 25 360-384 64-94 (162)
276 TIGR01425 SRP54_euk signal rec 46.7 2.3E+02 0.005 29.0 10.9 41 10-50 101-141 (429)
277 PRK06321 replicative DNA helic 46.5 2.1E+02 0.0045 29.7 10.9 42 12-53 229-271 (472)
278 PRK08760 replicative DNA helic 46.4 52 0.0011 34.1 6.5 42 12-53 232-274 (476)
279 PRK07206 hypothetical protein; 46.2 66 0.0014 32.5 7.3 32 10-46 3-34 (416)
280 PF02374 ArsA_ATPase: Anion-tr 46.0 30 0.00065 33.5 4.5 41 10-50 1-42 (305)
281 TIGR00665 DnaB replicative DNA 46.0 1.2E+02 0.0025 31.1 9.1 43 12-54 198-241 (434)
282 PRK04328 hypothetical protein; 45.8 2E+02 0.0042 26.9 9.9 47 10-56 24-70 (249)
283 PRK03767 NAD(P)H:quinone oxido 45.7 38 0.00082 30.5 4.8 38 9-46 1-40 (200)
284 PRK09165 replicative DNA helic 45.4 2.2E+02 0.0047 29.8 11.0 43 12-54 220-277 (497)
285 KOG1387 Glycosyltransferase [C 45.4 3.1E+02 0.0068 27.0 25.5 126 19-158 56-189 (465)
286 PRK05784 phosphoribosylamine-- 45.2 1.3E+02 0.0028 31.4 9.2 32 10-46 1-34 (486)
287 PRK06718 precorrin-2 dehydroge 45.2 1E+02 0.0022 27.8 7.5 150 275-459 10-165 (202)
288 cd07039 TPP_PYR_POX Pyrimidine 45.1 2E+02 0.0044 24.8 10.6 25 360-384 67-97 (164)
289 PLN02939 transferase, transfer 45.1 36 0.00078 38.2 5.3 40 8-47 480-525 (977)
290 TIGR00959 ffh signal recogniti 44.3 2E+02 0.0044 29.4 10.2 44 11-54 101-145 (428)
291 PRK09739 hypothetical protein; 44.1 55 0.0012 29.3 5.7 38 8-45 2-42 (199)
292 TIGR00421 ubiX_pad polyprenyl 43.9 30 0.00066 30.6 3.8 41 11-52 1-41 (181)
293 CHL00072 chlL photochlorophyll 43.9 41 0.00089 32.3 5.0 37 10-46 1-37 (290)
294 COG0240 GpsA Glycerol-3-phosph 43.7 31 0.00067 33.6 4.1 33 9-46 1-33 (329)
295 PF10083 DUF2321: Uncharacteri 43.7 52 0.0011 28.0 4.8 75 381-479 77-151 (158)
296 COG0552 FtsY Signal recognitio 43.5 2.5E+02 0.0053 27.5 10.0 48 9-56 139-186 (340)
297 PRK10916 ADP-heptose:LPS hepto 43.4 93 0.002 30.6 7.7 97 275-382 179-286 (348)
298 cd07038 TPP_PYR_PDC_IPDC_like 43.4 2.1E+02 0.0046 24.6 10.6 26 359-384 62-93 (162)
299 COG0287 TyrA Prephenate dehydr 42.9 2.4E+02 0.0051 27.0 9.9 43 8-55 2-44 (279)
300 KOG0853 Glycosyltransferase [C 42.8 24 0.00053 36.3 3.4 60 368-449 381-440 (495)
301 TIGR00064 ftsY signal recognit 42.7 2.4E+02 0.0052 26.7 10.0 38 11-48 74-111 (272)
302 cd01452 VWA_26S_proteasome_sub 42.6 1.8E+02 0.004 25.8 8.6 64 8-72 106-173 (187)
303 KOG0541 Alkyl hydroperoxide re 42.3 58 0.0013 27.8 4.9 60 10-70 44-110 (171)
304 COG0801 FolK 7,8-dihydro-6-hyd 42.2 50 0.0011 28.5 4.7 29 278-306 3-31 (160)
305 PRK00005 fmt methionyl-tRNA fo 42.0 2.2E+02 0.0048 27.5 9.9 31 10-45 1-31 (309)
306 COG0300 DltE Short-chain dehyd 41.9 2.1E+02 0.0045 27.1 9.2 34 10-46 6-39 (265)
307 PRK11199 tyrA bifunctional cho 41.9 2.3E+02 0.005 28.3 10.2 34 8-46 97-131 (374)
308 cd06533 Glyco_transf_WecG_TagA 41.8 2.4E+02 0.0051 24.6 10.7 87 210-315 48-134 (171)
309 PRK14618 NAD(P)H-dependent gly 41.8 37 0.0008 33.2 4.5 34 8-46 3-36 (328)
310 PRK00207 sulfur transfer compl 41.1 65 0.0014 26.7 5.2 36 10-45 1-40 (128)
311 PF00731 AIRC: AIR carboxylase 40.9 1.1E+02 0.0024 26.1 6.6 139 278-458 2-148 (150)
312 PRK08125 bifunctional UDP-gluc 40.7 1.7E+02 0.0038 31.8 9.8 32 10-46 1-33 (660)
313 PRK07773 replicative DNA helic 40.6 1.2E+02 0.0027 34.3 8.8 43 12-54 220-263 (886)
314 PRK06395 phosphoribosylamine-- 40.5 1.4E+02 0.0031 30.5 8.6 32 9-45 2-33 (435)
315 TIGR03878 thermo_KaiC_2 KaiC d 40.3 3.2E+02 0.0069 25.6 10.9 38 12-49 39-76 (259)
316 PRK00090 bioD dithiobiotin syn 40.0 2.5E+02 0.0054 25.4 9.5 33 12-44 2-35 (222)
317 TIGR00347 bioD dethiobiotin sy 40.0 2.4E+02 0.0051 24.1 9.9 27 17-43 6-32 (166)
318 PRK04148 hypothetical protein; 39.9 59 0.0013 27.2 4.6 33 8-46 16-48 (134)
319 PRK11519 tyrosine kinase; Prov 39.8 5.2E+02 0.011 28.5 13.4 39 8-46 524-564 (719)
320 PRK00094 gpsA NAD(P)H-dependen 39.8 33 0.00072 33.3 3.8 33 9-46 1-33 (325)
321 TIGR02699 archaeo_AfpA archaeo 39.5 48 0.001 29.1 4.3 41 12-53 2-44 (174)
322 PRK14477 bifunctional nitrogen 39.5 2.4E+02 0.0053 32.1 10.9 37 107-148 378-414 (917)
323 PF01470 Peptidase_C15: Pyrogl 39.2 42 0.00091 30.3 4.0 37 10-46 1-42 (202)
324 PRK05986 cob(I)alamin adenolsy 38.9 2.9E+02 0.0062 24.7 11.5 36 8-43 21-56 (191)
325 PRK08155 acetolactate synthase 38.8 96 0.0021 33.0 7.4 90 282-383 3-109 (564)
326 COG0052 RpsB Ribosomal protein 38.7 3.3E+02 0.0072 25.4 10.7 31 120-150 156-188 (252)
327 TIGR00877 purD phosphoribosyla 38.7 1.6E+02 0.0035 29.9 8.7 34 10-48 1-34 (423)
328 TIGR01862 N2-ase-Ialpha nitrog 38.2 2.9E+02 0.0062 28.4 10.4 35 108-147 377-411 (443)
329 PRK00885 phosphoribosylamine-- 38.0 1.2E+02 0.0026 30.7 7.7 29 10-43 1-30 (420)
330 PRK05636 replicative DNA helic 37.9 1.6E+02 0.0035 30.8 8.6 42 12-53 268-310 (505)
331 PLN02285 methionyl-tRNA formyl 37.8 2.3E+02 0.005 27.8 9.3 36 6-46 3-44 (334)
332 PRK06756 flavodoxin; Provision 37.7 62 0.0013 27.3 4.7 37 9-45 1-38 (148)
333 COG1663 LpxK Tetraacyldisaccha 37.6 94 0.002 30.4 6.3 35 12-46 52-86 (336)
334 PRK14619 NAD(P)H-dependent gly 37.3 45 0.00097 32.3 4.3 34 8-46 3-36 (308)
335 PRK05748 replicative DNA helic 37.3 2E+02 0.0042 29.6 9.1 43 12-54 206-249 (448)
336 cd02032 Bchl_like This family 37.2 56 0.0012 30.8 4.8 37 10-46 1-37 (267)
337 PRK13194 pyrrolidone-carboxyla 37.1 67 0.0014 29.2 5.0 27 10-36 1-29 (208)
338 PF08323 Glyco_transf_5: Starc 37.0 27 0.00058 32.6 2.5 24 24-47 20-43 (245)
339 PRK13193 pyrrolidone-carboxyla 36.9 76 0.0017 28.8 5.3 37 10-46 1-42 (209)
340 PF05225 HTH_psq: helix-turn-h 36.9 54 0.0012 21.5 3.2 27 424-453 1-27 (45)
341 TIGR02700 flavo_MJ0208 archaeo 36.8 56 0.0012 30.3 4.6 42 12-53 2-45 (234)
342 PTZ00345 glycerol-3-phosphate 36.6 46 0.001 33.2 4.2 37 6-47 8-51 (365)
343 PRK05579 bifunctional phosphop 36.5 70 0.0015 32.3 5.5 46 8-54 5-50 (399)
344 cd00984 DnaB_C DnaB helicase C 36.3 1.2E+02 0.0025 28.0 6.8 44 12-55 16-60 (242)
345 PF02558 ApbA: Ketopantoate re 36.3 57 0.0012 27.4 4.3 28 27-54 11-38 (151)
346 COG0678 AHP1 Peroxiredoxin [Po 36.2 61 0.0013 27.6 4.1 60 9-69 37-103 (165)
347 PRK02910 light-independent pro 36.2 2.8E+02 0.0061 29.2 10.2 35 108-147 352-386 (519)
348 PRK05632 phosphate acetyltrans 36.1 3E+02 0.0064 30.2 10.6 35 11-45 4-39 (684)
349 TIGR00521 coaBC_dfp phosphopan 36.0 56 0.0012 32.9 4.7 46 8-54 2-47 (390)
350 PF06745 KaiC: KaiC; InterPro 35.9 1.8E+02 0.004 26.4 7.9 49 10-58 20-69 (226)
351 PRK12827 short chain dehydroge 35.8 1.6E+02 0.0034 26.8 7.6 33 8-44 5-37 (249)
352 PRK10416 signal recognition pa 35.7 2E+02 0.0044 28.0 8.5 39 10-48 115-153 (318)
353 PRK12439 NAD(P)H-dependent gly 35.6 44 0.00095 33.0 3.9 36 1-43 1-36 (341)
354 PRK05579 bifunctional phosphop 35.4 4.6E+02 0.0099 26.5 11.1 149 276-437 7-182 (399)
355 PRK07819 3-hydroxybutyryl-CoA 35.3 43 0.00094 32.1 3.7 36 6-46 2-37 (286)
356 PF07355 GRDB: Glycine/sarcosi 35.2 74 0.0016 31.2 5.2 42 104-147 66-117 (349)
357 PRK12726 flagellar biosynthesi 35.1 3.3E+02 0.0072 27.5 9.7 40 11-50 208-247 (407)
358 TIGR02113 coaC_strep phosphopa 35.1 95 0.0021 27.4 5.5 65 369-435 105-176 (177)
359 PF02702 KdpD: Osmosensitive K 35.0 68 0.0015 28.9 4.5 39 8-46 4-42 (211)
360 PRK07236 hypothetical protein; 34.9 46 0.001 33.3 4.1 37 1-45 1-37 (386)
361 PF02571 CbiJ: Precorrin-6x re 34.9 2.5E+02 0.0054 26.3 8.6 103 26-147 118-225 (249)
362 PRK13236 nitrogenase reductase 34.8 76 0.0017 30.5 5.4 42 1-45 1-42 (296)
363 COG2084 MmsB 3-hydroxyisobutyr 34.6 53 0.0011 31.4 4.1 32 10-46 1-32 (286)
364 PF09001 DUF1890: Domain of un 34.1 55 0.0012 27.3 3.5 29 22-50 12-40 (139)
365 PRK12311 rpsB 30S ribosomal pr 34.0 3.5E+02 0.0077 26.5 9.6 33 119-151 151-185 (326)
366 PRK13197 pyrrolidone-carboxyla 34.0 79 0.0017 28.9 5.0 27 9-35 1-29 (215)
367 COG3349 Uncharacterized conser 33.8 43 0.00093 34.5 3.5 32 10-46 1-32 (485)
368 PF01695 IstB_IS21: IstB-like 33.7 63 0.0014 28.4 4.2 39 9-47 47-85 (178)
369 COG0313 Predicted methyltransf 33.5 4.3E+02 0.0092 25.1 11.6 153 106-287 66-228 (275)
370 PRK13234 nifH nitrogenase redu 33.4 80 0.0017 30.4 5.2 39 8-46 3-41 (295)
371 PF06506 PrpR_N: Propionate ca 33.3 11 0.00025 33.1 -0.6 117 20-151 16-153 (176)
372 TIGR01861 ANFD nitrogenase iro 33.3 3.7E+02 0.0079 28.3 10.3 31 112-147 392-422 (513)
373 TIGR01182 eda Entner-Doudoroff 33.2 3E+02 0.0066 24.8 8.5 36 108-146 71-106 (204)
374 TIGR01281 DPOR_bchL light-inde 33.1 72 0.0016 30.0 4.8 37 10-46 1-37 (268)
375 COG0771 MurD UDP-N-acetylmuram 33.0 69 0.0015 32.8 4.8 37 8-49 6-42 (448)
376 cd02072 Glm_B12_BD B12 binding 32.7 1.8E+02 0.0039 24.1 6.4 45 11-55 1-45 (128)
377 COG2120 Uncharacterized protei 32.7 77 0.0017 29.4 4.8 38 8-45 9-46 (237)
378 cd02034 CooC The accessory pro 32.5 1E+02 0.0022 24.9 5.0 37 11-47 1-37 (116)
379 PRK09302 circadian clock prote 32.5 1.2E+02 0.0027 31.7 6.9 47 10-56 274-320 (509)
380 PRK08591 acetyl-CoA carboxylas 32.5 2.5E+02 0.0054 28.8 9.1 34 9-47 2-35 (451)
381 PRK11064 wecC UDP-N-acetyl-D-m 32.3 61 0.0013 33.0 4.4 33 8-45 2-34 (415)
382 COG1797 CobB Cobyrinic acid a, 32.1 2.2E+02 0.0047 29.0 7.9 32 12-43 3-35 (451)
383 PF05693 Glycogen_syn: Glycoge 32.0 70 0.0015 33.9 4.7 95 347-456 462-566 (633)
384 KOG3062 RNA polymerase II elon 32.0 98 0.0021 28.5 5.0 31 9-39 1-31 (281)
385 PF03721 UDPG_MGDP_dh_N: UDP-g 31.9 69 0.0015 28.4 4.2 32 10-46 1-32 (185)
386 COG0569 TrkA K+ transport syst 31.7 57 0.0012 30.0 3.7 32 10-46 1-32 (225)
387 PRK12744 short chain dehydroge 31.6 2.3E+02 0.0051 26.0 8.1 32 11-45 9-40 (257)
388 COG0467 RAD55 RecA-superfamily 31.2 1.2E+02 0.0027 28.3 6.1 49 10-58 24-72 (260)
389 TIGR02237 recomb_radB DNA repa 31.0 3.8E+02 0.0083 23.8 10.2 43 12-54 15-58 (209)
390 TIGR02113 coaC_strep phosphopa 31.0 57 0.0012 28.7 3.5 41 11-52 2-42 (177)
391 cd01141 TroA_d Periplasmic bin 30.9 70 0.0015 28.0 4.1 37 108-147 60-98 (186)
392 PF07991 IlvN: Acetohydroxy ac 30.9 58 0.0013 28.2 3.3 36 8-48 3-38 (165)
393 COG2210 Peroxiredoxin family p 30.9 1E+02 0.0022 25.9 4.5 34 13-46 7-40 (137)
394 PRK13185 chlL protochlorophyll 30.7 84 0.0018 29.6 4.9 37 10-46 2-39 (270)
395 TIGR00379 cobB cobyrinic acid 30.5 4.9E+02 0.011 26.8 10.7 34 12-45 2-36 (449)
396 TIGR00416 sms DNA repair prote 30.4 2.2E+02 0.0047 29.4 8.1 42 12-53 97-138 (454)
397 PRK12446 undecaprenyldiphospho 30.4 1.1E+02 0.0023 30.4 5.7 100 277-383 3-121 (352)
398 PF13450 NAD_binding_8: NAD(P) 30.4 61 0.0013 23.3 3.0 20 27-46 9-28 (68)
399 PLN00016 RNA-binding protein; 30.3 60 0.0013 32.4 4.0 37 8-46 51-89 (378)
400 COG2039 Pcp Pyrrolidone-carbox 30.3 1E+02 0.0023 27.3 4.8 38 10-47 1-43 (207)
401 COG0143 MetG Methionyl-tRNA sy 30.0 80 0.0017 33.4 4.8 41 8-48 3-53 (558)
402 COG0059 IlvC Ketol-acid reduct 30.0 86 0.0019 30.2 4.5 53 8-72 17-69 (338)
403 COG0859 RfaF ADP-heptose:LPS h 30.0 3.7E+02 0.008 26.3 9.4 101 9-151 175-280 (334)
404 TIGR00661 MJ1255 conserved hyp 29.9 1.9E+02 0.0042 27.9 7.4 34 350-383 87-120 (321)
405 PRK12825 fabG 3-ketoacyl-(acyl 29.9 2.6E+02 0.0055 25.3 8.0 35 8-46 5-39 (249)
406 TIGR01380 glut_syn glutathione 29.7 83 0.0018 30.5 4.7 37 10-46 1-40 (312)
407 TIGR02195 heptsyl_trn_II lipop 29.7 5.2E+02 0.011 25.0 12.4 100 10-150 175-279 (334)
408 PRK06129 3-hydroxyacyl-CoA deh 29.7 57 0.0012 31.6 3.6 33 9-46 2-34 (308)
409 TIGR02329 propionate_PrpR prop 29.7 5.2E+02 0.011 27.3 10.8 29 119-150 144-172 (526)
410 TIGR03026 NDP-sugDHase nucleot 29.5 70 0.0015 32.4 4.3 31 10-45 1-31 (411)
411 TIGR01007 eps_fam capsular exo 29.2 1.1E+02 0.0023 27.4 5.1 39 8-46 15-55 (204)
412 PRK03094 hypothetical protein; 28.9 51 0.0011 24.8 2.3 21 26-46 10-30 (80)
413 PF10093 DUF2331: Uncharacteri 28.8 1.1E+02 0.0024 30.4 5.3 88 289-381 192-287 (374)
414 PF03853 YjeF_N: YjeF-related 28.7 1.4E+02 0.0031 25.9 5.6 35 8-43 24-58 (169)
415 PRK13604 luxD acyl transferase 28.7 1.2E+02 0.0025 29.5 5.3 37 8-44 35-71 (307)
416 PRK06703 flavodoxin; Provision 28.7 1E+02 0.0022 26.0 4.6 38 9-46 1-39 (151)
417 PRK06731 flhF flagellar biosyn 28.6 5.1E+02 0.011 24.5 10.4 41 8-48 74-114 (270)
418 PRK08939 primosomal protein Dn 28.6 84 0.0018 30.5 4.5 43 10-52 157-199 (306)
419 PRK06719 precorrin-2 dehydroge 28.5 86 0.0019 27.0 4.1 34 8-46 12-45 (157)
420 PF06825 HSBP1: Heat shock fac 28.5 85 0.0019 21.6 3.1 50 426-481 2-51 (54)
421 COG1348 NifH Nitrogenase subun 28.3 1.2E+02 0.0026 28.1 5.0 44 9-52 1-44 (278)
422 TIGR01470 cysG_Nterm siroheme 28.3 4.4E+02 0.0096 23.7 9.7 150 275-459 9-165 (205)
423 PRK10427 putative PTS system f 28.3 1.3E+02 0.0027 24.4 4.7 39 9-47 2-43 (114)
424 cd01840 SGNH_hydrolase_yrhL_li 28.2 2.4E+02 0.0052 23.7 6.8 39 275-314 50-88 (150)
425 PF00148 Oxidored_nitro: Nitro 28.1 3.8E+02 0.0083 26.8 9.4 35 108-147 331-365 (398)
426 cd07035 TPP_PYR_POX_like Pyrim 27.6 3.7E+02 0.008 22.5 8.9 25 360-384 63-93 (155)
427 PRK00421 murC UDP-N-acetylmura 27.5 88 0.0019 32.3 4.7 35 8-46 6-40 (461)
428 COG1763 MobB Molybdopterin-gua 27.5 1.2E+02 0.0026 26.2 4.8 38 9-46 1-39 (161)
429 PF06564 YhjQ: YhjQ protein; 27.5 1.2E+02 0.0026 28.3 5.0 35 11-45 3-38 (243)
430 PRK06835 DNA replication prote 27.5 96 0.0021 30.4 4.7 41 10-50 184-224 (329)
431 PRK10037 cell division protein 27.3 1.1E+02 0.0023 28.6 4.8 37 11-47 3-40 (250)
432 PRK05234 mgsA methylglyoxal sy 27.3 3.8E+02 0.0082 22.6 10.0 98 8-147 3-112 (142)
433 PF06418 CTP_synth_N: CTP synt 27.1 78 0.0017 29.8 3.7 38 10-47 1-41 (276)
434 KOG1111 N-acetylglucosaminyltr 27.0 2.2E+02 0.0049 28.2 6.8 87 289-384 208-303 (426)
435 PLN02929 NADH kinase 26.9 77 0.0017 30.6 3.8 65 354-438 64-137 (301)
436 COG1893 ApbA Ketopantoate redu 26.8 1.1E+02 0.0024 29.6 5.0 41 10-55 1-41 (307)
437 PRK11780 isoprenoid biosynthes 26.7 1.4E+02 0.0029 27.4 5.2 37 10-46 2-42 (217)
438 PRK08673 3-deoxy-7-phosphohept 26.6 6.3E+02 0.014 24.9 10.2 33 278-316 179-211 (335)
439 TIGR01915 npdG NADPH-dependent 26.6 69 0.0015 29.2 3.4 31 10-45 1-32 (219)
440 PRK05708 2-dehydropantoate 2-r 26.6 75 0.0016 30.7 3.8 33 9-46 2-34 (305)
441 PRK14620 NAD(P)H-dependent gly 26.6 71 0.0015 31.1 3.7 32 10-46 1-32 (326)
442 COG1422 Predicted membrane pro 26.4 2E+02 0.0043 25.8 5.8 80 368-474 24-104 (201)
443 KOG2884 26S proteasome regulat 26.3 3.7E+02 0.0081 24.5 7.5 68 7-74 105-176 (259)
444 TIGR01918 various_sel_PB selen 26.3 1.3E+02 0.0028 30.4 5.3 42 104-147 62-113 (431)
445 TIGR01917 gly_red_sel_B glycin 26.2 1.3E+02 0.0028 30.4 5.2 42 104-147 62-113 (431)
446 COG1553 DsrE Uncharacterized c 26.2 1.5E+02 0.0033 24.3 4.7 36 10-45 1-40 (126)
447 TIGR01279 DPOR_bchN light-inde 26.2 3.8E+02 0.0081 27.2 8.9 34 9-47 274-307 (407)
448 cd06559 Endonuclease_V Endonuc 26.1 81 0.0017 28.6 3.6 38 110-147 83-127 (208)
449 PTZ00445 p36-lilke protein; Pr 26.1 5.1E+02 0.011 23.7 8.9 30 21-50 74-104 (219)
450 PLN02496 probable phosphopanto 26.1 1.8E+02 0.0039 26.4 5.8 89 346-437 88-198 (209)
451 COG3140 Uncharacterized protei 26.1 1.7E+02 0.0037 20.0 4.1 26 460-485 24-49 (60)
452 COG0503 Apt Adenine/guanine ph 26.0 1.5E+02 0.0032 26.2 5.2 37 109-147 44-82 (179)
453 TIGR00745 apbA_panE 2-dehydrop 25.8 73 0.0016 30.3 3.6 19 28-46 5-23 (293)
454 TIGR02398 gluc_glyc_Psyn gluco 25.7 7.8E+02 0.017 25.7 15.3 111 340-481 364-484 (487)
455 PF07015 VirC1: VirC1 protein; 25.7 1.8E+02 0.0039 26.9 5.7 40 12-51 4-44 (231)
456 COG2099 CobK Precorrin-6x redu 25.6 3.7E+02 0.008 25.2 7.7 100 28-147 119-228 (257)
457 cd01075 NAD_bind_Leu_Phe_Val_D 25.6 1.1E+02 0.0024 27.5 4.5 32 8-44 27-58 (200)
458 CHL00175 minD septum-site dete 25.5 1.3E+02 0.0028 28.5 5.2 39 8-46 13-53 (281)
459 TIGR02990 ectoine_eutA ectoine 25.5 4.7E+02 0.01 24.3 8.6 44 23-71 105-151 (239)
460 PRK08309 short chain dehydroge 25.5 4.6E+02 0.0099 22.9 12.4 32 10-46 1-32 (177)
461 KOG1250 Threonine/serine dehyd 25.4 7.1E+02 0.015 25.1 16.2 58 365-439 252-317 (457)
462 PRK06027 purU formyltetrahydro 25.4 3E+02 0.0066 26.3 7.6 113 1-150 83-196 (286)
463 PF01380 SIS: SIS domain SIS d 25.4 1.8E+02 0.004 23.3 5.5 39 13-51 56-94 (131)
464 TIGR00173 menD 2-succinyl-5-en 25.3 4.1E+02 0.0089 27.1 9.1 25 359-383 66-96 (432)
465 cd07025 Peptidase_S66 LD-Carbo 25.2 1.1E+02 0.0024 29.2 4.6 30 287-316 44-73 (282)
466 PRK02155 ppnK NAD(+)/NADH kina 25.1 1.3E+02 0.0028 28.9 5.1 28 354-383 63-94 (291)
467 PRK12724 flagellar biosynthesi 24.8 5.8E+02 0.013 26.1 9.6 42 10-51 224-266 (432)
468 COG2236 Predicted phosphoribos 24.6 2.1E+02 0.0046 25.6 5.8 45 106-150 15-62 (192)
469 PRK08293 3-hydroxybutyryl-CoA 24.6 88 0.0019 29.9 3.8 34 8-46 2-35 (287)
470 PF03698 UPF0180: Uncharacteri 24.6 65 0.0014 24.2 2.2 21 26-46 10-30 (80)
471 PRK07576 short chain dehydroge 24.5 1.8E+02 0.0039 27.1 5.9 42 1-46 1-42 (264)
472 PF03720 UDPG_MGDP_dh_C: UDP-g 24.4 90 0.0019 24.7 3.2 29 24-52 17-45 (106)
473 cd01976 Nitrogenase_MoFe_alpha 24.4 93 0.002 31.7 4.1 36 107-147 358-393 (421)
474 PF02776 TPP_enzyme_N: Thiamin 24.3 1.6E+02 0.0036 25.4 5.2 29 354-384 64-98 (172)
475 KOG2836 Protein tyrosine phosp 24.2 3.1E+02 0.0067 22.9 6.1 55 8-74 15-71 (173)
476 cd01422 MGS Methylglyoxal synt 24.1 3.8E+02 0.0083 21.5 8.5 86 21-147 9-107 (115)
477 TIGR03445 mycothiol_MshB 1D-my 23.8 3.8E+02 0.0083 25.6 7.9 19 106-126 111-129 (284)
478 PRK08462 biotin carboxylase; V 23.8 4.3E+02 0.0092 27.0 8.9 36 8-48 3-38 (445)
479 cd01983 Fer4_NifH The Fer4_Nif 23.8 1.8E+02 0.0038 21.5 4.8 33 12-44 2-34 (99)
480 PF12695 Abhydrolase_5: Alpha/ 23.8 1.5E+02 0.0032 24.1 4.7 34 13-46 2-35 (145)
481 COG0504 PyrG CTP synthase (UTP 23.8 1.6E+02 0.0035 30.4 5.4 39 10-48 1-42 (533)
482 COG3640 CooC CO dehydrogenase 23.7 1.8E+02 0.004 26.9 5.3 41 10-50 1-42 (255)
483 PRK09841 cryptic autophosphory 23.6 7.8E+02 0.017 27.2 11.3 39 8-46 529-569 (726)
484 PF02780 Transketolase_C: Tran 23.5 1.5E+02 0.0032 24.1 4.5 36 8-45 8-43 (124)
485 TIGR02114 coaB_strep phosphopa 23.5 93 0.002 28.6 3.6 20 26-45 28-47 (227)
486 cd00561 CobA_CobO_BtuR ATP:cor 23.4 4.9E+02 0.011 22.5 11.2 33 11-43 4-36 (159)
487 PRK12409 D-amino acid dehydrog 23.4 84 0.0018 31.7 3.6 31 10-45 2-32 (410)
488 PLN00141 Tic62-NAD(P)-related 23.3 1.7E+02 0.0036 27.1 5.4 34 8-45 16-49 (251)
489 TIGR00725 conserved hypothetic 23.1 1.2E+02 0.0025 26.2 3.9 34 9-42 1-36 (159)
490 CHL00194 ycf39 Ycf39; Provisio 23.0 1.3E+02 0.0028 29.1 4.7 33 10-46 1-33 (317)
491 COG4394 Uncharacterized protei 23.0 6.8E+02 0.015 24.0 13.0 39 339-380 239-280 (370)
492 cd00316 Oxidoreductase_nitroge 23.0 4.9E+02 0.011 25.9 9.1 36 107-147 337-372 (399)
493 cd00501 Peptidase_C15 Pyroglut 23.0 1.7E+02 0.0036 26.1 5.1 37 10-46 1-42 (194)
494 PRK00170 azoreductase; Reviewe 22.9 1.7E+02 0.0036 26.0 5.1 37 9-45 1-43 (201)
495 PRK08533 flagellar accessory p 22.8 5.9E+02 0.013 23.3 9.1 47 9-55 24-70 (230)
496 PRK10818 cell division inhibit 22.8 1.4E+02 0.003 28.1 4.8 39 9-47 1-41 (270)
497 cd01981 Pchlide_reductase_B Pc 22.8 1.2E+02 0.0027 30.9 4.7 36 108-148 360-395 (430)
498 PRK12767 carbamoyl phosphate s 22.8 1.2E+02 0.0027 29.3 4.6 32 9-46 1-34 (326)
499 PRK15461 NADH-dependent gamma- 22.7 94 0.002 29.9 3.6 32 9-45 1-32 (296)
500 PRK12743 oxidoreductase; Provi 22.7 3.5E+02 0.0075 24.9 7.5 33 10-45 2-34 (256)
No 1
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=2.4e-67 Score=532.29 Aligned_cols=473 Identities=56% Similarity=1.040 Sum_probs=358.2
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCccc
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENF 87 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~ 87 (488)
++.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+...+......+.+|+|+.+|+|..++++|++.+..
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~ 86 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENL 86 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCcccc
Confidence 56899999999999999999999999999999999999988766655433211112249999999887666888776543
Q ss_pred cCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEEecchHHHHHHHhhhcccccc
Q 011339 88 DMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSTVQ 167 (488)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 167 (488)
...+...+...+..........+.+++++.+.+|++||+|.+.+|+..+|+.+|||.+.|++++++.+.+++++......
T Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~ 166 (491)
T PLN02534 87 DTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHNAH 166 (491)
T ss_pred ccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhccc
Confidence 33332244555666666778888888886435789999999999999999999999999999999888765543222211
Q ss_pred cccCCCCCccccCCCCCcccc--cccc------chHHHHHHHHHhhccccceEEEcCchhhhHHHHHHHHhhcCCceEEe
Q 011339 168 ENVTSNSDYLVVPGLPDQIEM--TKVR------EKWKDFGEMVLAADMKSYGIIINTFEELELEYVKECKKTKGGKVWCL 239 (488)
Q Consensus 168 ~~~~~~~~~~~~p~l~~~~~~--~~~~------~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~~v 239 (488)
........+..+|++|....+ ..+. +.+..+...+......++++++|||.+||+.+++.++..++++++.|
T Consensus 167 ~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~~~v~~V 246 (491)
T PLN02534 167 LSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLPDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIKKKVWCV 246 (491)
T ss_pred ccCCCCCceeecCCCCccccccHHHCChhhcCcccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcCCcEEEE
Confidence 111122234557887642211 1111 22334444444444567799999999999999999987777789999
Q ss_pred CCCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhcCCCCeEEEEeCCCCCc
Q 011339 240 GPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTS 319 (488)
Q Consensus 240 Gpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~v~~~~~~~~~~ 319 (488)
||++.......+...++......+++|.+||+.+++++||||||||.....++++.+++.+++.++.+|||++.... ..
T Consensus 247 GPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~-~~ 325 (491)
T PLN02534 247 GPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGE-KH 325 (491)
T ss_pred CcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCc-cc
Confidence 99975321110000001111112457999999998899999999999999999999999999999999999998432 11
Q ss_pred hhhhhhhhhHHHHHHhcCCCeEEecccchhhhhccCCcccccccCCchhHHHHhhcCCCEeecCcccccchhHHHHHHHh
Q 011339 320 KEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVL 399 (488)
Q Consensus 320 ~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~ 399 (488)
.+..++.+|++|.++....|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||++++|.+
T Consensus 326 ~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~ 405 (491)
T PLN02534 326 SELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVL 405 (491)
T ss_pred cchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhh
Confidence 11112226888887777789888999999999999999999999999999999999999999999999999999998899
Q ss_pred cceEEecccCCCCCCcccccccccCHHHHHHHHHHHHcc-CcchHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 011339 400 NIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDE-GGETDDRRKRAREFQIMAKRATEETRSSSLMIKLLIQDIM 478 (488)
Q Consensus 400 G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~-~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~ 478 (488)
|+|+++..+....++.+++.+..++.++|.++|+++|.+ +++++++|+||++|++++++++++||||..++++||++|.
T Consensus 406 ~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl~~fv~~i~ 485 (491)
T PLN02534 406 RIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINLSILIQDVL 485 (491)
T ss_pred cceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 999998644322222211001248999999999999973 4567899999999999999999999999999999999998
Q ss_pred cCC
Q 011339 479 QQP 481 (488)
Q Consensus 479 ~~~ 481 (488)
++-
T Consensus 486 ~~~ 488 (491)
T PLN02534 486 KQQ 488 (491)
T ss_pred HHh
Confidence 764
No 2
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=5e-65 Score=516.54 Aligned_cols=459 Identities=32% Similarity=0.577 Sum_probs=349.6
Q ss_pred CCCCCCCCCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCC
Q 011339 1 MASEGSCQQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGV 80 (488)
Q Consensus 1 m~~~~~~~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 80 (488)
|....+-+++||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+++... ...+++++.+|+|..+ ++
T Consensus 1 ~~~~~~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~----~~~~i~~~~lp~P~~~-~l 75 (477)
T PLN02863 1 MTELNKPAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS----KHPSIETLVLPFPSHP-SI 75 (477)
T ss_pred CcccccCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc----cCCCeeEEeCCCCCcC-CC
Confidence 565555588999999999999999999999999999999999999988776654321 1125888888887653 78
Q ss_pred CCCCccccCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEEecchHHHHHHHhh
Q 011339 81 PEGCENFDMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISFHGFSCFCLLCLYN 160 (488)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~ 160 (488)
|++.+.....+ .+....+..+.....+.+.+++++.+.+|++||+|.+.+|+..+|+.+|||.+.|++++++.+.++++
T Consensus 76 PdG~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~ 154 (477)
T PLN02863 76 PSGVENVKDLP-PSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYS 154 (477)
T ss_pred CCCCcChhhcc-hhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHH
Confidence 88876543322 23344566666677778888887643478999999999999999999999999999999999999888
Q ss_pred hcccccccc-cCCCCCc---cccCCCCCcccccccc---------chHHHHHHHHHhhccccceEEEcCchhhhHHHHHH
Q 011339 161 LHTSTVQEN-VTSNSDY---LVVPGLPDQIEMTKVR---------EKWKDFGEMVLAADMKSYGIIINTFEELELEYVKE 227 (488)
Q Consensus 161 ~~~~~~~~~-~~~~~~~---~~~p~l~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~ 227 (488)
+....+... ....... ..+||++. +....+. ..+...+....+.....+++++|||.+||+.+++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~iPg~~~-~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 233 (477)
T PLN02863 155 LWREMPTKINPDDQNEILSFSKIPNCPK-YPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEH 233 (477)
T ss_pred HhhcccccccccccccccccCCCCCCCC-cChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHH
Confidence 754322110 0111111 23566653 2111111 11112222222234567789999999999999999
Q ss_pred HHhhcC-CceEEeCCCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhcCCC
Q 011339 228 CKKTKG-GKVWCLGPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKK 306 (488)
Q Consensus 228 ~~~~~~-~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~ 306 (488)
++..++ ++++.|||+++..........++...+..+++|.+||+.+++++||||||||....+.+++.+++.+++.+++
T Consensus 234 ~~~~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~ 313 (477)
T PLN02863 234 LKKELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGV 313 (477)
T ss_pred HHhhcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCC
Confidence 987665 6899999997543211000011111111356899999999889999999999999999999999999999999
Q ss_pred CeEEEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEEecccchhhhhccCCcccccccCCchhHHHHhhcCCCEeecCccc
Q 011339 307 PFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYG 386 (488)
Q Consensus 307 ~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~ 386 (488)
+|||+++........... +|+++.++....|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++
T Consensus 314 ~flw~~~~~~~~~~~~~~--lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~ 391 (477)
T PLN02863 314 HFIWCVKEPVNEESDYSN--IPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAA 391 (477)
T ss_pred cEEEEECCCcccccchhh--CCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccc
Confidence 999999753201111222 788888888888999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCCch
Q 011339 387 DQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETRSS 466 (488)
Q Consensus 387 DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~ 466 (488)
||+.||+++++++|+|+++.... ....+.+++.++|+++|.+ ++.||+||+++++.+++|+++|||+
T Consensus 392 DQ~~na~~v~~~~gvG~~~~~~~----------~~~~~~~~v~~~v~~~m~~---~~~~r~~a~~l~e~a~~Av~~gGSS 458 (477)
T PLN02863 392 DQFVNASLLVDELKVAVRVCEGA----------DTVPDSDELARVFMESVSE---NQVERERAKELRRAALDAIKERGSS 458 (477)
T ss_pred cchhhHHHHHHhhceeEEeccCC----------CCCcCHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHhccCCcH
Confidence 99999999755789999995320 0146899999999999942 2499999999999999999999999
Q ss_pred HHHHHHHHHHHHcCC
Q 011339 467 SLMIKLLIQDIMQQP 481 (488)
Q Consensus 467 ~~~~~~~i~~~~~~~ 481 (488)
..++++||+++.+..
T Consensus 459 ~~~l~~~v~~i~~~~ 473 (477)
T PLN02863 459 VKDLDGFVKHVVELG 473 (477)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999997543
No 3
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=2.8e-64 Score=515.43 Aligned_cols=461 Identities=41% Similarity=0.772 Sum_probs=344.9
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhh--cCCCCeEEEEeeCCccccCCCCCCc
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAM--QSGLPLQLIEIQFPYQEAGVPEGCE 85 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~l~~~~~ 85 (488)
+++||+++|+|++||++|++.||++|++|||+|||++++.+...+++...... ..+..+.+..+++|..+++++++.+
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e 83 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCE 83 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcc
Confidence 56899999999999999999999999999999999999988766655433211 1122356777777766557777654
Q ss_pred cccCCC------chhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEEecchHHHHHHHh
Q 011339 86 NFDMLH------STDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISFHGFSCFCLLCLY 159 (488)
Q Consensus 86 ~~~~~~------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~ 159 (488)
.....+ ...+...+......+.+.+.+++++ .+||+||+|.+++|+..+|+.+|||.+.|++++++.+.+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~ 161 (482)
T PLN03007 84 NVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLET--TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASY 161 (482)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHhc--CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHH
Confidence 332110 1133444555566788888888887 78999999999999999999999999999999988777655
Q ss_pred hhcccccccccCCCCCccccCCCCCcccccc--c---c--chHHHHHHHHHhhccccceEEEcCchhhhHHHHHHHHhhc
Q 011339 160 NLHTSTVQENVTSNSDYLVVPGLPDQIEMTK--V---R--EKWKDFGEMVLAADMKSYGIIINTFEELELEYVKECKKTK 232 (488)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~--~---~--~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~ 232 (488)
...................+|++|..+.+.. + . ..+........+...+.+++++|++.+||+++.+.+++..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~~~~~~ 241 (482)
T PLN03007 162 CIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDADEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADFYKSFV 241 (482)
T ss_pred HHHhcccccccCCCCceeeCCCCCCccccCHHhcCCCCCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHHHHhcc
Confidence 4432211111111112234677763222111 1 1 1233344444455677889999999999999888887666
Q ss_pred CCceEEeCCCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhcCCCCeEEEE
Q 011339 233 GGKVWCLGPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVI 312 (488)
Q Consensus 233 ~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~v~~~ 312 (488)
...+++|||+............++...+..+++|.+|++.++++++|||||||+...+.+++.+++.+++..+++|||++
T Consensus 242 ~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~ 321 (482)
T PLN03007 242 AKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVV 321 (482)
T ss_pred CCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 56899999986542211000011111222357899999999889999999999999888999999999999999999999
Q ss_pred eCCCCCc-hhhhhhhhhHHHHHHhcCCCeEEecccchhhhhccCCcccccccCCchhHHHHhhcCCCEeecCcccccchh
Q 011339 313 RGGNNTS-KEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQFWN 391 (488)
Q Consensus 313 ~~~~~~~-~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~DQ~~n 391 (488)
+... .. ..+.. +|++|.++..+.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.|
T Consensus 322 ~~~~-~~~~~~~~--lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ~~n 398 (482)
T PLN03007 322 RKNE-NQGEKEEW--LPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYN 398 (482)
T ss_pred ecCC-cccchhhc--CCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhhhhh
Confidence 8642 11 11122 78899888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Q 011339 392 EKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETRSSSLMIK 471 (488)
Q Consensus 392 a~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~ 471 (488)
|+++++.+++|+.+.....+. .+...++.++|+++|+++|.| +++++||+||+++++.+++++++||||..+++
T Consensus 399 a~~~~~~~~~G~~~~~~~~~~-----~~~~~~~~~~l~~av~~~m~~-~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~l~ 472 (482)
T PLN03007 399 EKLVTQVLRTGVSVGAKKLVK-----VKGDFISREKVEKAVREVIVG-EEAEERRLRAKKLAEMAKAAVEEGGSSFNDLN 472 (482)
T ss_pred HHHHHHhhcceeEeccccccc-----cccCcccHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 999855566776653210000 000258999999999999987 45789999999999999999999999999999
Q ss_pred HHHHHHHc
Q 011339 472 LLIQDIMQ 479 (488)
Q Consensus 472 ~~i~~~~~ 479 (488)
+||+.+.+
T Consensus 473 ~~v~~~~~ 480 (482)
T PLN03007 473 KFMEELNS 480 (482)
T ss_pred HHHHHHHh
Confidence 99999874
No 4
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=9.2e-63 Score=495.36 Aligned_cols=428 Identities=24% Similarity=0.365 Sum_probs=330.4
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCccc
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENF 87 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~ 87 (488)
+++||+++|+|++||++|++.||+.|+++||+|||++++.+...+.+. .....++++..++++.. ++++++.+..
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~----~a~~~~i~~~~l~~p~~-dgLp~g~~~~ 77 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHH----NLFPDSIVFHPLTIPPV-NGLPAGAETT 77 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcc----cCCCCceEEEEeCCCCc-cCCCCCcccc
Confidence 678999999999999999999999999999999999998765554332 11122577877776533 3777765422
Q ss_pred cCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEEecchHHHHHHHhhhcccccc
Q 011339 88 DMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSTVQ 167 (488)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 167 (488)
.... ......+......+.+.+++++++ .++|+||+| ++.|+..+|+.+|||.+.|++++++.+. +++.+.
T Consensus 78 ~~l~-~~l~~~~~~~~~~~~~~l~~~L~~--~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~---- 148 (442)
T PLN02208 78 SDIP-ISMDNLLSEALDLTRDQVEAAVRA--LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG---- 148 (442)
T ss_pred cchh-HHHHHHHHHHHHHHHHHHHHHHhh--CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc----
Confidence 1111 122334555667788889999988 789999999 6789999999999999999999988654 333321
Q ss_pred cccCCCCCccccCCCCCc-ccccc--cc------chHHHHHHHHHhhccccceEEEcCchhhhHHHHHHHHhhcCCceEE
Q 011339 168 ENVTSNSDYLVVPGLPDQ-IEMTK--VR------EKWKDFGEMVLAADMKSYGIIINTFEELELEYVKECKKTKGGKVWC 238 (488)
Q Consensus 168 ~~~~~~~~~~~~p~l~~~-~~~~~--~~------~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~~ 238 (488)
... ...+|++|.. +.++. +. ..+..+..++.+...+++++++|||.+||+.+.+.+++.++++++.
T Consensus 149 ~~~-----~~~~pglp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~ 223 (442)
T PLN02208 149 GKL-----GVPPPGYPSSKVLFRENDAHALATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLL 223 (442)
T ss_pred ccc-----CCCCCCCCCcccccCHHHcCcccccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEE
Confidence 111 1124666641 11111 11 1234444444445668899999999999999999998887789999
Q ss_pred eCCCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhcCCCCeEEEEeCCCCC
Q 011339 239 LGPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNT 318 (488)
Q Consensus 239 vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~v~~~~~~~~~ 318 (488)
|||+++.... ...++++|.+||+.+++++||||||||....+.+++.+++.+++..+..++|+..... .
T Consensus 224 vGpl~~~~~~----------~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~-~ 292 (442)
T PLN02208 224 TGPMFPEPDT----------SKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPR-G 292 (442)
T ss_pred EeecccCcCC----------CCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCC-c
Confidence 9999754210 0114678999999998889999999999998999899988888777888888877431 1
Q ss_pred chhhhhhhhhHHHHHHhcCCCeEEecccchhhhhccCCcccccccCCchhHHHHhhcCCCEeecCcccccchhHHHHHHH
Q 011339 319 SKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQV 398 (488)
Q Consensus 319 ~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~ 398 (488)
.....++ +|++|.++....|+++.+|+||.+||+|+++++|||||||||++|++++|||||++|+++||+.||+++++.
T Consensus 293 ~~~~~~~-lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~ 371 (442)
T PLN02208 293 SSTVQEG-LPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEE 371 (442)
T ss_pred ccchhhh-CCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHH
Confidence 0011122 899999988889999999999999999999999999999999999999999999999999999999997545
Q ss_pred hcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccC-cchHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 011339 399 LNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEG-GETDDRRKRAREFQIMAKRATEETRSSSLMIKLLIQDI 477 (488)
Q Consensus 399 ~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~-~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~ 477 (488)
+|+|+.++..+ ++.++.++|+++|+++|+|+ ++++.+|+|++++++.+. ++||+..++++||+++
T Consensus 372 ~g~gv~~~~~~----------~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v~~l 437 (442)
T PLN02208 372 FEVSVEVSREK----------TGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFVEEL 437 (442)
T ss_pred hceeEEecccc----------CCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHH
Confidence 99999997541 01389999999999999876 467889999999999973 3789999999999998
Q ss_pred HcC
Q 011339 478 MQQ 480 (488)
Q Consensus 478 ~~~ 480 (488)
++.
T Consensus 438 ~~~ 440 (442)
T PLN02208 438 QEY 440 (442)
T ss_pred HHh
Confidence 653
No 5
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2e-62 Score=494.13 Aligned_cols=433 Identities=27% Similarity=0.422 Sum_probs=324.3
Q ss_pred CCCCCCCCCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCC
Q 011339 1 MASEGSCQQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGV 80 (488)
Q Consensus 1 m~~~~~~~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 80 (488)
|.++. ++.||+++|+|++||++|++.||+.|+.+|+.|||++++.+... .. ....++++..+| +++
T Consensus 1 ~~~~~--~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~--~~-----~~~~~i~~~~ip-----~gl 66 (451)
T PLN02410 1 MEEKP--ARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS--PS-----DDFTDFQFVTIP-----ESL 66 (451)
T ss_pred CCcCC--CCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc--cc-----cCCCCeEEEeCC-----CCC
Confidence 67554 88999999999999999999999999999999999999966421 11 011258888876 366
Q ss_pred CCCCccccCCCchhhHHHHHHHHHHhhHHHHHHHHhc----CCCCeEEEEcCCCcchHHHHHhcCCCcEEEecchHHHHH
Q 011339 81 PEGCENFDMLHSTDLVSNFFKSLRLLQLPLENLLKEL----TPKPSCIVSDTCYPWTVDTAARFNIPRISFHGFSCFCLL 156 (488)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~ 156 (488)
|++.... ..... .+......+...+.+++++. +.++++||+|.+.+|+..+|+.+|||.+.|++++++.+.
T Consensus 67 p~~~~~~--~~~~~---~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~ 141 (451)
T PLN02410 67 PESDFKN--LGPIE---FLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFV 141 (451)
T ss_pred Ccccccc--cCHHH---HHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHH
Confidence 6532111 11112 22222223444555555442 246799999999999999999999999999999999887
Q ss_pred HHhhhcccc------cccccCCCCCccccCCCCCcccccccc-------chHHHHHHHHHhhccccceEEEcCchhhhHH
Q 011339 157 CLYNLHTST------VQENVTSNSDYLVVPGLPDQIEMTKVR-------EKWKDFGEMVLAADMKSYGIIINTFEELELE 223 (488)
Q Consensus 157 ~~~~~~~~~------~~~~~~~~~~~~~~p~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~ 223 (488)
++.++.... +..... ......+|++|. +....+. ..+...+.... ...+++++++|||.+||++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~iPg~~~-~~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~vlvNTf~eLE~~ 218 (451)
T PLN02410 142 CRSVFDKLYANNVLAPLKEPK-GQQNELVPEFHP-LRCKDFPVSHWASLESIMELYRNTV-DKRTASSVIINTASCLESS 218 (451)
T ss_pred HHHHHHHHHhccCCCCccccc-cCccccCCCCCC-CChHHCcchhcCCcHHHHHHHHHHh-hcccCCEEEEeChHHhhHH
Confidence 766542211 101100 112234677653 1111111 11112222111 2457889999999999999
Q ss_pred HHHHHHhhcCCceEEeCCCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhc
Q 011339 224 YVKECKKTKGGKVWCLGPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEA 303 (488)
Q Consensus 224 ~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~ 303 (488)
+++.++...++++++|||+++..... ...+..+.+|.+||+.+++++||||||||....+.+++.+++.+++.
T Consensus 219 ~~~~l~~~~~~~v~~vGpl~~~~~~~-------~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~ 291 (451)
T PLN02410 219 SLSRLQQQLQIPVYPIGPLHLVASAP-------TSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDS 291 (451)
T ss_pred HHHHHHhccCCCEEEecccccccCCC-------ccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHh
Confidence 99999877777899999997542110 11122345789999999889999999999999999999999999999
Q ss_pred CCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEEecccchhhhhccCCcccccccCCchhHHHHhhcCCCEeecC
Q 011339 304 SKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWP 383 (488)
Q Consensus 304 ~~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P 383 (488)
++.+|+|+++.......+..+. +|++|.++.. +|.++.+|+||.+||+|+++++|||||||||++|++++|||||++|
T Consensus 292 s~~~FlWv~r~~~~~~~~~~~~-lp~~f~er~~-~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P 369 (451)
T PLN02410 292 SNQQFLWVIRPGSVRGSEWIES-LPKEFSKIIS-GRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKP 369 (451)
T ss_pred cCCCeEEEEccCcccccchhhc-CChhHHHhcc-CCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEecc
Confidence 9999999997431011111111 7888877764 5667779999999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcC
Q 011339 384 LYGDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEET 463 (488)
Q Consensus 384 ~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~g 463 (488)
+++||+.||+++++.+|+|+.+.. .++.++|+++|+++|.|++ +++||+||+++++.+++++++|
T Consensus 370 ~~~DQ~~na~~~~~~~~~G~~~~~--------------~~~~~~v~~av~~lm~~~~-~~~~r~~a~~l~~~~~~a~~~g 434 (451)
T PLN02410 370 FSSDQKVNARYLECVWKIGIQVEG--------------DLDRGAVERAVKRLMVEEE-GEEMRKRAISLKEQLRASVISG 434 (451)
T ss_pred ccccCHHHHHHHHHHhCeeEEeCC--------------cccHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999645599999973 4899999999999998754 7899999999999999999999
Q ss_pred CchHHHHHHHHHHHHc
Q 011339 464 RSSSLMIKLLIQDIMQ 479 (488)
Q Consensus 464 g~~~~~~~~~i~~~~~ 479 (488)
||+..++++||+.+..
T Consensus 435 GsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 435 GSSHNSLEEFVHFMRT 450 (451)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998863
No 6
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=2.1e-62 Score=494.24 Aligned_cols=432 Identities=26% Similarity=0.445 Sum_probs=333.4
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHH-HCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCcc
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLA-QHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCEN 86 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~-~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~ 86 (488)
.++||+++|+|++||++|++.||+.|+ ++|+.|||++++.+...+.+.... ..+++++.+|+|..+ ++++...
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~----~~~i~~~~lp~p~~~-glp~~~~- 77 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLN----STGVDIVGLPSPDIS-GLVDPSA- 77 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhcccc----CCCceEEECCCcccc-CCCCCCc-
Confidence 457999999999999999999999998 789999999999776554332111 125889998876542 5542111
Q ss_pred ccCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEEecchHHHHHHHhhhcccc-
Q 011339 87 FDMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTST- 165 (488)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~- 165 (488)
+....+......+.+.+++++++...+|++||+|.+.+|+..+|+++|||.+.|++++++.++++.+.+...
T Consensus 78 -------~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~ 150 (481)
T PLN02992 78 -------HVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDK 150 (481)
T ss_pred -------cHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcc
Confidence 111233333445667788888764357999999999999999999999999999999999887766654311
Q ss_pred ccc-ccCCCCCccccCCCCCcccccccc--------chHHHHHHHHHhhccccceEEEcCchhhhHHHHHHHHhh--c--
Q 011339 166 VQE-NVTSNSDYLVVPGLPDQIEMTKVR--------EKWKDFGEMVLAADMKSYGIIINTFEELELEYVKECKKT--K-- 232 (488)
Q Consensus 166 ~~~-~~~~~~~~~~~p~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~--~-- 232 (488)
... .......+..+|++|. +....+. +.+..+.... ....+++++++|||.+||+.+++.++.. .
T Consensus 151 ~~~~~~~~~~~~~~iPg~~~-l~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~ 228 (481)
T PLN02992 151 DIKEEHTVQRKPLAMPGCEP-VRFEDTLDAYLVPDEPVYRDFVRHG-LAYPKADGILVNTWEEMEPKSLKSLQDPKLLGR 228 (481)
T ss_pred ccccccccCCCCcccCCCCc-cCHHHhhHhhcCCCcHHHHHHHHHH-HhcccCCEEEEechHHHhHHHHHHHhhcccccc
Confidence 111 0001112345777764 2211111 1123333333 3466788999999999999999988642 1
Q ss_pred --CCceEEeCCCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhcCCCCeEE
Q 011339 233 --GGKVWCLGPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIW 310 (488)
Q Consensus 233 --~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~v~ 310 (488)
.++++.|||+++.... ...+.+|.+||+.+++++||||||||....+.+++++++.+|+.++.+|||
T Consensus 229 ~~~~~v~~VGPl~~~~~~-----------~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW 297 (481)
T PLN02992 229 VARVPVYPIGPLCRPIQS-----------SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVW 297 (481)
T ss_pred ccCCceEEecCccCCcCC-----------CcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEE
Confidence 2579999999753210 013467999999998899999999999999999999999999999999999
Q ss_pred EEeCCCCC---------------chhhhhhhhhHHHHHHhcCCCeEEecccchhhhhccCCcccccccCCchhHHHHhhc
Q 011339 311 VIRGGNNT---------------SKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCSWNSSLEGISA 375 (488)
Q Consensus 311 ~~~~~~~~---------------~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~IthgG~gs~~eal~~ 375 (488)
++.... + ...+.++ +|++|.++....++++.+|+||.+||+|+++++|||||||||++|++++
T Consensus 298 ~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~-lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~ 375 (481)
T PLN02992 298 VVRPPV-DGSACSAYFSANGGETRDNTPEY-LPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVG 375 (481)
T ss_pred EEeCCc-ccccccccccCcccccccchhhh-CCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHc
Confidence 996321 0 0111223 8899999999999999999999999999999999999999999999999
Q ss_pred CCCEeecCcccccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHH
Q 011339 376 GVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIM 455 (488)
Q Consensus 376 GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~ 455 (488)
|||||++|+++||+.||+++++++|+|+.++..+ ..++.++|.++|+++|.|+ +++.+|+|+++++++
T Consensus 376 GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~-----------~~~~~~~l~~av~~vm~~~-~g~~~r~~a~~~~~~ 443 (481)
T PLN02992 376 GVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPK-----------EVISRSKIEALVRKVMVEE-EGEEMRRKVKKLRDT 443 (481)
T ss_pred CCCEEecCccchhHHHHHHHHHHhCeeEEecCCC-----------CcccHHHHHHHHHHHhcCC-chHHHHHHHHHHHHH
Confidence 9999999999999999999844999999997531 1489999999999999874 678999999999999
Q ss_pred HHHHHh--cCCchHHHHHHHHHHHHc
Q 011339 456 AKRATE--ETRSSSLMIKLLIQDIMQ 479 (488)
Q Consensus 456 ~~~~~~--~gg~~~~~~~~~i~~~~~ 479 (488)
+++|++ +||||..++++||+++.+
T Consensus 444 a~~Av~~~~GGSS~~~l~~~v~~~~~ 469 (481)
T PLN02992 444 AEMSLSIDGGGVAHESLCRVTKECQR 469 (481)
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHH
Confidence 999994 699999999999999764
No 7
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.3e-61 Score=484.20 Aligned_cols=429 Identities=26% Similarity=0.399 Sum_probs=331.3
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCccc
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENF 87 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~ 87 (488)
.++||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+.+. . ....++.+..+++|.. ++++++.+..
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~--~--~~~~~~~v~~~~~p~~-~glp~g~e~~ 78 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL--N--LFPHNIVFRSVTVPHV-DGLPVGTETV 78 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc--c--cCCCCceEEEEECCCc-CCCCCccccc
Confidence 568999999999999999999999999999999999999876655431 1 0111334444444433 3787765543
Q ss_pred cCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEEecchHHHHHHHhhhcccccc
Q 011339 88 DMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSTVQ 167 (488)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 167 (488)
.... ......+..+.....+.+.++++. .+||+||+| +.+|+..+|+.+|||.+.|++++++.+.++++ +.
T Consensus 79 ~~~~-~~~~~~~~~a~~~~~~~~~~~l~~--~~~~~iV~D-~~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~---- 149 (453)
T PLN02764 79 SEIP-VTSADLLMSAMDLTRDQVEVVVRA--VEPDLIFFD-FAHWIPEVARDFGLKTVKYVVVSASTIASMLV-PG---- 149 (453)
T ss_pred ccCC-hhHHHHHHHHHHHhHHHHHHHHHh--CCCCEEEEC-CchhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc----
Confidence 3222 123345566666778889999988 688999999 47899999999999999999999988877653 11
Q ss_pred cccCCCCCccccCCCCCc---ccc---ccc----c----chHHHHHHHHHhhccccceEEEcCchhhhHHHHHHHHhhcC
Q 011339 168 ENVTSNSDYLVVPGLPDQ---IEM---TKV----R----EKWKDFGEMVLAADMKSYGIIINTFEELELEYVKECKKTKG 233 (488)
Q Consensus 168 ~~~~~~~~~~~~p~l~~~---~~~---~~~----~----~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~ 233 (488)
.... ...|++|.. ++. +.. . ..+..+..++.....+.+++++|||.+||+.+++.++...+
T Consensus 150 ~~~~-----~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~ 224 (453)
T PLN02764 150 GELG-----VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHCR 224 (453)
T ss_pred ccCC-----CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhcC
Confidence 1110 123566521 111 100 0 12334444443446778899999999999999999876545
Q ss_pred CceEEeCCCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhcCCCCeEEEEe
Q 011339 234 GKVWCLGPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIR 313 (488)
Q Consensus 234 ~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~v~~~~ 313 (488)
++++.|||+++..... ...+++|.+|||.+++++||||||||....+.+++.+++.+++..+..|+|++.
T Consensus 225 ~~v~~VGPL~~~~~~~----------~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r 294 (453)
T PLN02764 225 KKVLLTGPVFPEPDKT----------RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVK 294 (453)
T ss_pred CcEEEeccCccCcccc----------ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence 7899999996532100 013568999999999999999999999999999999999999999999999998
Q ss_pred CCCCCchhhhhhhhhHHHHHHhcCCCeEEecccchhhhhccCCcccccccCCchhHHHHhhcCCCEeecCcccccchhHH
Q 011339 314 GGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQFWNEK 393 (488)
Q Consensus 314 ~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~DQ~~na~ 393 (488)
... .......+ +|++|.++....++++.+|+||.+||+|+++++|||||||||++|++++|||||++|++.||+.||+
T Consensus 295 ~~~-~~~~~~~~-lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~ 372 (453)
T PLN02764 295 PPR-GSSTIQEA-LPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTR 372 (453)
T ss_pred CCC-CCcchhhh-CCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHH
Confidence 532 11111222 8999999888888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccC-cchHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Q 011339 394 LIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEG-GETDDRRKRAREFQIMAKRATEETRSSSLMIKL 472 (488)
Q Consensus 394 rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~-~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~ 472 (488)
++++.+|+|+.+..++ ...++.++|+++|+++|+++ ++++.+|+|+++++++++ +|||+..++++
T Consensus 373 ~l~~~~g~gv~~~~~~----------~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~----~~GSS~~~l~~ 438 (453)
T PLN02764 373 LLSDELKVSVEVAREE----------TGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLA----SPGLLTGYVDN 438 (453)
T ss_pred HHHHHhceEEEecccc----------CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH----hcCCHHHHHHH
Confidence 9964689999885320 01489999999999999876 457889999999999974 57999999999
Q ss_pred HHHHHHcCC
Q 011339 473 LIQDIMQQP 481 (488)
Q Consensus 473 ~i~~~~~~~ 481 (488)
||+++++--
T Consensus 439 lv~~~~~~~ 447 (453)
T PLN02764 439 FIESLQDLV 447 (453)
T ss_pred HHHHHHHhc
Confidence 999998765
No 8
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.2e-61 Score=490.54 Aligned_cols=440 Identities=27% Similarity=0.436 Sum_probs=323.3
Q ss_pred CCCCCCCCCCEEEEEcCCCccCHHHHHHHHHH--HHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCcccc
Q 011339 1 MASEGSCQQPHFVLFPFLAQGHMIPMIDTARL--LAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEA 78 (488)
Q Consensus 1 m~~~~~~~~~kvl~~~~~~~GHv~p~l~LA~~--L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 78 (488)
|++... ++.||+++|+|++||++|++.||++ |++||++|||++++.+.+.++.. .. .-..+++..++ +
T Consensus 1 ~~~~~~-~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~-~~---~~~~~~~~~~~-----~ 70 (456)
T PLN02210 1 MGSSEG-QETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTV-EK---PRRPVDLVFFS-----D 70 (456)
T ss_pred CCCcCC-CCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccc-cC---CCCceEEEECC-----C
Confidence 554422 6689999999999999999999999 56999999999999776544221 10 01134444433 3
Q ss_pred CCCCCCccccCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEEecchHHHHHHH
Q 011339 79 GVPEGCENFDMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISFHGFSCFCLLCL 158 (488)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~ 158 (488)
+++++.. . .....+......+...+.+++++ .+||+||+|.+.+|+..+|+.+|||.+.|+++++..+..+
T Consensus 71 glp~~~~-----~--~~~~~~~~~~~~~~~~l~~~l~~--~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~ 141 (456)
T PLN02210 71 GLPKDDP-----R--APETLLKSLNKVGAKNLSKIIEE--KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVY 141 (456)
T ss_pred CCCCCcc-----c--CHHHHHHHHHHhhhHHHHHHHhc--CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHH
Confidence 6666532 1 11112222223456678888887 6899999999999999999999999999999999888776
Q ss_pred hhhccc-ccccccCCCCCccccCCCCCcccccccc--------chHHHHHHHHHhhccccceEEEcCchhhhHHHHHHHH
Q 011339 159 YNLHTS-TVQENVTSNSDYLVVPGLPDQIEMTKVR--------EKWKDFGEMVLAADMKSYGIIINTFEELELEYVKECK 229 (488)
Q Consensus 159 ~~~~~~-~~~~~~~~~~~~~~~p~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~ 229 (488)
++.... ...........+..+|+++. ++...+. ..+...+.++.+.....+++++|||.+||+++++.++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~Pgl~~-~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~ 220 (456)
T PLN02210 142 YRYYMKTNSFPDLEDLNQTVELPALPL-LEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMA 220 (456)
T ss_pred HhhhhccCCCCcccccCCeeeCCCCCC-CChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHh
Confidence 654321 11111111112345777763 2211111 1233344444444566789999999999999999887
Q ss_pred hhcCCceEEeCCCCCCC---CCcchh-hhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhcCC
Q 011339 230 KTKGGKVWCLGPVSLCN---KQDIDK-AERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASK 305 (488)
Q Consensus 230 ~~~~~~~~~vGpl~~~~---~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~ 305 (488)
+ . +++++|||+++.. ...... .......|..+++|.+|++.++++++|||||||....+.+++++++.+++..+
T Consensus 221 ~-~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~ 298 (456)
T PLN02210 221 D-L-KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRG 298 (456)
T ss_pred h-c-CCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCC
Confidence 6 3 6899999997421 100000 00001123456789999999988899999999999999999999999999999
Q ss_pred CCeEEEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEEecccchhhhhccCCcccccccCCchhHHHHhhcCCCEeecCcc
Q 011339 306 KPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLY 385 (488)
Q Consensus 306 ~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~ 385 (488)
.+|||+++... ... .++++.++..+++.++++|+||.+||+|+++++|||||||||++|++++|||||++|++
T Consensus 299 ~~flw~~~~~~-~~~------~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~ 371 (456)
T PLN02210 299 VPFLWVIRPKE-KAQ------NVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSW 371 (456)
T ss_pred CCEEEEEeCCc-ccc------chhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccc
Confidence 99999997542 110 23344444433566778999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCCc
Q 011339 386 GDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETRS 465 (488)
Q Consensus 386 ~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~ 465 (488)
+||+.||+++++.+|+|+.+...+ .++.++.++|+++|+++|.| ++++++|+||++|++.+++|+++|||
T Consensus 372 ~DQ~~na~~~~~~~g~G~~l~~~~---------~~~~~~~~~l~~av~~~m~~-~~g~~~r~~a~~l~~~a~~Av~~gGS 441 (456)
T PLN02210 372 TDQPIDARLLVDVFGIGVRMRNDA---------VDGELKVEEVERCIEAVTEG-PAAADIRRRAAELKHVARLALAPGGS 441 (456)
T ss_pred cccHHHHHHHHHHhCeEEEEeccc---------cCCcCCHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 999999999963399999996421 01258999999999999986 44678999999999999999999999
Q ss_pred hHHHHHHHHHHHHc
Q 011339 466 SSLMIKLLIQDIMQ 479 (488)
Q Consensus 466 ~~~~~~~~i~~~~~ 479 (488)
|..++++||+.+..
T Consensus 442 S~~~l~~~v~~~~~ 455 (456)
T PLN02210 442 SARNLDLFISDITI 455 (456)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999863
No 9
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=2.5e-61 Score=491.10 Aligned_cols=443 Identities=28% Similarity=0.486 Sum_probs=333.9
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCC----CeEEEEeCCcchh----hhHHHHHhhhcCCCCeEEEEeeCCccccC
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHG----AAITIVTTPANAA----RFKTVVARAMQSGLPLQLIEIQFPYQEAG 79 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rG----H~Vt~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 79 (488)
++.||+++|+|++||++|++.||+.|+.+| +.|||++++.+.+ .+...+......+.+|+++++|++.
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---- 77 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVE---- 77 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCC----
Confidence 677999999999999999999999999997 7899999876532 3433332211112258899887542
Q ss_pred CCCCCccccCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEEecchHHHHHHHh
Q 011339 80 VPEGCENFDMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISFHGFSCFCLLCLY 159 (488)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~ 159 (488)
++++.+. ....+........+.+++++++...++++||+|.+.+|+..+|+.+|||.+.|++++++.+.+++
T Consensus 78 ~p~~~e~--------~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~ 149 (480)
T PLN00164 78 PPTDAAG--------VEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALML 149 (480)
T ss_pred CCCcccc--------HHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHh
Confidence 2222211 11122223445667788877763235799999999999999999999999999999999998887
Q ss_pred hhcccccc-c-ccCCCCCccccCCCCCcccccccc--------chHHHHHHHHHhhccccceEEEcCchhhhHHHHHHHH
Q 011339 160 NLHTSTVQ-E-NVTSNSDYLVVPGLPDQIEMTKVR--------EKWKDFGEMVLAADMKSYGIIINTFEELELEYVKECK 229 (488)
Q Consensus 160 ~~~~~~~~-~-~~~~~~~~~~~p~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~ 229 (488)
+++..... . .......+..+||+|. ++...+. ..+..+... .+...+++++++|||.+||+.+++.++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~iPGlp~-l~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~~vlvNTf~eLE~~~~~~~~ 227 (480)
T PLN00164 150 RLPALDEEVAVEFEEMEGAVDVPGLPP-VPASSLPAPVMDKKSPNYAWFVYH-GRRFMEAAGIIVNTAAELEPGVLAAIA 227 (480)
T ss_pred hhhhhcccccCcccccCcceecCCCCC-CChHHCCchhcCCCcHHHHHHHHH-HHhhhhcCEEEEechHHhhHHHHHHHH
Confidence 76432110 0 0111012334677753 2111111 112233322 334567889999999999999999987
Q ss_pred hhc------CCceEEeCCCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhc
Q 011339 230 KTK------GGKVWCLGPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEA 303 (488)
Q Consensus 230 ~~~------~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~ 303 (488)
... .++++.|||+++..... ..+..+++|.+||+.+++++||||||||....+.+++.+++.+++.
T Consensus 228 ~~~~~~~~~~~~v~~vGPl~~~~~~~--------~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~ 299 (480)
T PLN00164 228 DGRCTPGRPAPTVYPIGPVISLAFTP--------PAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLER 299 (480)
T ss_pred hccccccCCCCceEEeCCCccccccC--------CCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHH
Confidence 642 15899999997432110 0112457899999999889999999999999999999999999999
Q ss_pred CCCCeEEEEeCCCCC------chhhhhhhhhHHHHHHhcCCCeEEecccchhhhhccCCcccccccCCchhHHHHhhcCC
Q 011339 304 SKKPFIWVIRGGNNT------SKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGV 377 (488)
Q Consensus 304 ~~~~~v~~~~~~~~~------~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~IthgG~gs~~eal~~Gv 377 (488)
++.+|||++...... ..+..++ +|+++.++....++++.+|+||.+||+|+++++|||||||||++|++++||
T Consensus 300 s~~~flWv~~~~~~~~~~~~~~~~~~~~-lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GV 378 (480)
T PLN00164 300 SGHRFLWVLRGPPAAGSRHPTDADLDEL-LPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGV 378 (480)
T ss_pred cCCCEEEEEcCCcccccccccccchhhh-CChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCC
Confidence 999999999753200 0112233 788998888888888889999999999999999999999999999999999
Q ss_pred CEeecCcccccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCc-chHHHHHHHHHHHHHH
Q 011339 378 PLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGG-ETDDRRKRAREFQIMA 456 (488)
Q Consensus 378 P~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~-~~~~~~~~a~~l~~~~ 456 (488)
|||++|+++||+.||+++++.+|+|+.+..++ .+++.++.++|.++|+++|.|++ +++.+|+||++|++++
T Consensus 379 P~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~--------~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~ 450 (480)
T PLN00164 379 PMAPWPLYAEQHLNAFELVADMGVAVAMKVDR--------KRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAAC 450 (480)
T ss_pred CEEeCCccccchhHHHHHHHHhCeEEEecccc--------ccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 99999999999999988755799999986421 00124799999999999998876 4889999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHHHcCC
Q 011339 457 KRATEETRSSSLMIKLLIQDIMQQP 481 (488)
Q Consensus 457 ~~~~~~gg~~~~~~~~~i~~~~~~~ 481 (488)
++++++|||+..++++||++++.+.
T Consensus 451 ~~a~~~gGSS~~~l~~~v~~~~~~~ 475 (480)
T PLN00164 451 RKAVEEGGSSYAALQRLAREIRHGA 475 (480)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998775
No 10
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=3.6e-61 Score=486.69 Aligned_cols=449 Identities=26% Similarity=0.460 Sum_probs=327.5
Q ss_pred CCCCCCCCCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHH--HHHhhhcCCCC---eEEEEeeCCc
Q 011339 1 MASEGSCQQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKT--VVARAMQSGLP---LQLIEIQFPY 75 (488)
Q Consensus 1 m~~~~~~~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~i~~~~ 75 (488)
|+.+- ...||+++|+|++||++|++.||+.|+.+|..|||++++.+...+.+ .+........+ ++|..+|
T Consensus 1 ~~~~~--~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p--- 75 (480)
T PLN02555 1 MESES--SLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE--- 75 (480)
T ss_pred CCCCC--CCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC---
Confidence 77775 66899999999999999999999999999999999999976665542 11000000111 3343332
Q ss_pred cccCCCCCCccccCCCchhhHHHHHHHH-HHhhHHHHHHHHhc---CCCCeEEEEcCCCcchHHHHHhcCCCcEEEecch
Q 011339 76 QEAGVPEGCENFDMLHSTDLVSNFFKSL-RLLQLPLENLLKEL---TPKPSCIVSDTCYPWTVDTAARFNIPRISFHGFS 151 (488)
Q Consensus 76 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~---~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~~ 151 (488)
+++|++.+.. . +.. .++... ....+.+.++++.. ..++++||+|.+.+|+..+|+++|||.+.|++++
T Consensus 76 --dglp~~~~~~---~--~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~ 147 (480)
T PLN02555 76 --DGWAEDDPRR---Q--DLD-LYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQS 147 (480)
T ss_pred --CCCCCCcccc---c--CHH-HHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeeccc
Confidence 3666554311 1 121 222222 24556666666542 1234999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccc-cccccCCCCCccccCCCCCcccccccc---------ch-HHHHHHHHHhhccccceEEEcCchhh
Q 011339 152 CFCLLCLYNLHTST-VQENVTSNSDYLVVPGLPDQIEMTKVR---------EK-WKDFGEMVLAADMKSYGIIINTFEEL 220 (488)
Q Consensus 152 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~l~~~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~l~~s~~~l 220 (488)
++.+.++++++... ..........+..+|++|. ++...+. +. +..+...+ +...+++++++|||.+|
T Consensus 148 a~~~~~~~~~~~~~~~~~~~~~~~~~~~iPglp~-l~~~dlp~~~~~~~~~~~~~~~~~~~~-~~~~~a~~vlvNTf~eL 225 (480)
T PLN02555 148 CACFSAYYHYYHGLVPFPTETEPEIDVQLPCMPL-LKYDEIPSFLHPSSPYPFLRRAILGQY-KNLDKPFCILIDTFQEL 225 (480)
T ss_pred HHHHHHHHHHhhcCCCcccccCCCceeecCCCCC-cCHhhCcccccCCCCchHHHHHHHHHH-HhcccCCEEEEEchHHH
Confidence 99998877763211 1111111112345788864 2111111 11 12222222 34567889999999999
Q ss_pred hHHHHHHHHhhcCCceEEeCCCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHH
Q 011339 221 ELEYVKECKKTKGGKVWCLGPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLG 300 (488)
Q Consensus 221 e~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a 300 (488)
|+.+++.+++.. + ++.|||+++....... ..+...+..+.+|.+||+.+++++||||||||+...+.+++.+++.+
T Consensus 226 E~~~~~~l~~~~-~-v~~iGPl~~~~~~~~~--~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~ 301 (480)
T PLN02555 226 EKEIIDYMSKLC-P-IKPVGPLFKMAKTPNS--DVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYG 301 (480)
T ss_pred hHHHHHHHhhCC-C-EEEeCcccCccccccc--cccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHH
Confidence 999999887643 4 9999999753211100 00111133457899999999888999999999999999999999999
Q ss_pred HhcCCCCeEEEEeCCCCCchhhh-hhhhhHHHHHHhcCCCeEEecccchhhhhccCCcccccccCCchhHHHHhhcCCCE
Q 011339 301 LEASKKPFIWVIRGGNNTSKEIQ-EWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPL 379 (488)
Q Consensus 301 ~~~~~~~~v~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~IthgG~gs~~eal~~GvP~ 379 (488)
++..+.+|||++.... ...... .+ +|+++.++. +.|+++.+|+||.+||+|+++++|||||||||++||+++||||
T Consensus 302 l~~~~~~flW~~~~~~-~~~~~~~~~-lp~~~~~~~-~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~ 378 (480)
T PLN02555 302 VLNSGVSFLWVMRPPH-KDSGVEPHV-LPEEFLEKA-GDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPV 378 (480)
T ss_pred HHhcCCeEEEEEecCc-ccccchhhc-CChhhhhhc-CCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCE
Confidence 9999999999987421 100010 11 777776554 4677888999999999999999999999999999999999999
Q ss_pred eecCcccccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHH
Q 011339 380 ITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRA 459 (488)
Q Consensus 380 v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~ 459 (488)
|++|+++||+.||+++++.+|+|+++...+ + ....++.++|.++|+++|.+ ++++.+|+||++|++++++|
T Consensus 379 l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~------~--~~~~v~~~~v~~~v~~vm~~-~~g~~~r~ra~~l~~~a~~A 449 (480)
T PLN02555 379 VCFPQWGDQVTDAVYLVDVFKTGVRLCRGE------A--ENKLITREEVAECLLEATVG-EKAAELKQNALKWKEEAEAA 449 (480)
T ss_pred EeCCCccccHHHHHHHHHHhCceEEccCCc------c--ccCcCcHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHH
Confidence 999999999999999975569999995310 0 00258999999999999976 46789999999999999999
Q ss_pred HhcCCchHHHHHHHHHHHHcC
Q 011339 460 TEETRSSSLMIKLLIQDIMQQ 480 (488)
Q Consensus 460 ~~~gg~~~~~~~~~i~~~~~~ 480 (488)
+++|||+..++++||+++.++
T Consensus 450 ~~egGSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 450 VAEGGSSDRNFQEFVDKLVRK 470 (480)
T ss_pred hcCCCcHHHHHHHHHHHHHhc
Confidence 999999999999999999876
No 11
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=2.1e-61 Score=486.00 Aligned_cols=430 Identities=23% Similarity=0.380 Sum_probs=328.6
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCccc
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENF 87 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~ 87 (488)
+++||+++|+|++||++|++.||+.|+++|++|||++++.+...+.+.. ....+++|+.+++|.. +++|++.+..
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~----~~~~~i~~~~i~lP~~-dGLP~g~e~~ 77 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLN----LFPDSIVFEPLTLPPV-DGLPFGAETA 77 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccc----cCCCceEEEEecCCCc-CCCCCccccc
Confidence 5789999999999999999999999999999999999997765553321 1122588888877754 3787775432
Q ss_pred cCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEEecchHHHHHHHhhhcccccc
Q 011339 88 DMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSTVQ 167 (488)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 167 (488)
..... .....+......+.+.+++++++ .+||+||+|. ++|+..+|+.+|||.+.|++++++.+.++++...
T Consensus 78 ~~l~~-~~~~~~~~a~~~l~~~l~~~L~~--~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~---- 149 (446)
T PLN00414 78 SDLPN-STKKPIFDAMDLLRDQIEAKVRA--LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRA---- 149 (446)
T ss_pred ccchh-hHHHHHHHHHHHHHHHHHHHHhc--CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHh----
Confidence 22211 22334556666778888888877 6899999995 7899999999999999999999988887665211
Q ss_pred cccCCCCCccccCCCCCc---cccccc--cch---HHHHHHHHHhhccccceEEEcCchhhhHHHHHHHHhhcCCceEEe
Q 011339 168 ENVTSNSDYLVVPGLPDQ---IEMTKV--REK---WKDFGEMVLAADMKSYGIIINTFEELELEYVKECKKTKGGKVWCL 239 (488)
Q Consensus 168 ~~~~~~~~~~~~p~l~~~---~~~~~~--~~~---~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~~v 239 (488)
... ..+|++|.. ++.... ... ....+.+..+...+++++++|||.+||+.+++.++..++++++.|
T Consensus 150 -~~~-----~~~pg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~V 223 (446)
T PLN00414 150 -ELG-----FPPPDYPLSKVALRGHDANVCSLFANSHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLLT 223 (446)
T ss_pred -hcC-----CCCCCCCCCcCcCchhhcccchhhcccHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeEEE
Confidence 000 123455431 110000 000 112223333455678999999999999999999877556689999
Q ss_pred CCCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhcCCCCeEEEEeCCCCCc
Q 011339 240 GPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTS 319 (488)
Q Consensus 240 Gpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~v~~~~~~~~~~ 319 (488)
||+++..... . + ...+++|.+|||.+++++||||||||....+.+++.+++.+++..+..|+|++.... ..
T Consensus 224 GPl~~~~~~~-~----~---~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~-~~ 294 (446)
T PLN00414 224 GPMLPEPQNK-S----G---KPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPK-GS 294 (446)
T ss_pred cccCCCcccc-c----C---cccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCC-Cc
Confidence 9997532110 0 0 112457999999999999999999999999999999999999999999999997532 11
Q ss_pred hhhhhhhhhHHHHHHhcCCCeEEecccchhhhhccCCcccccccCCchhHHHHhhcCCCEeecCcccccchhHHHHHHHh
Q 011339 320 KEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVL 399 (488)
Q Consensus 320 ~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~ 399 (488)
.+..++ +|++|.++....++++.+|+||.+||+|+++++|||||||||++|++++|||||++|++.||+.||+++++.+
T Consensus 295 ~~~~~~-lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~ 373 (446)
T PLN00414 295 STVQEA-LPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEEL 373 (446)
T ss_pred ccchhh-CChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHh
Confidence 112223 8999999988888888899999999999999999999999999999999999999999999999999996579
Q ss_pred cceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccC-cchHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 011339 400 NIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEG-GETDDRRKRAREFQIMAKRATEETRSSSLMIKLLIQDIM 478 (488)
Q Consensus 400 G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~-~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~ 478 (488)
|+|+++...+ .+.++.++|+++|+++|.|+ ++++.+|+|++++++.+ .++||++.. +++||+++.
T Consensus 374 g~g~~~~~~~----------~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~---~~~gg~ss~-l~~~v~~~~ 439 (446)
T PLN00414 374 EVSVKVQRED----------SGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETL---VSPGLLSGY-ADKFVEALE 439 (446)
T ss_pred CeEEEecccc----------CCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH---HcCCCcHHH-HHHHHHHHH
Confidence 9999996431 01489999999999999875 45778999999999996 455884433 899999985
Q ss_pred cC
Q 011339 479 QQ 480 (488)
Q Consensus 479 ~~ 480 (488)
+.
T Consensus 440 ~~ 441 (446)
T PLN00414 440 NE 441 (446)
T ss_pred Hh
Confidence 43
No 12
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.5e-61 Score=482.88 Aligned_cols=426 Identities=27% Similarity=0.459 Sum_probs=320.0
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCC-cc
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGC-EN 86 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~-~~ 86 (488)
++.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+... ..++|+++.+| +++|++. +.
T Consensus 4 ~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~------~~~~i~~~~ip-----dglp~~~~~~ 72 (449)
T PLN02173 4 MRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD------PSSPISIATIS-----DGYDQGGFSS 72 (449)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC------CCCCEEEEEcC-----CCCCCccccc
Confidence 568999999999999999999999999999999999999765544221 12358898886 3676632 21
Q ss_pred ccCCCchhhHHHHHHHHHHhhHHHHHHHHhc--CCCC-eEEEEcCCCcchHHHHHhcCCCcEEEecchHHHHHHHhhhcc
Q 011339 87 FDMLHSTDLVSNFFKSLRLLQLPLENLLKEL--TPKP-SCIVSDTCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHT 163 (488)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~p-D~vv~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~ 163 (488)
. . +....+........+.+++++++. ..+| ++||+|.+.+|+..+|+.+|||.+.|++++++.+.++++...
T Consensus 73 ~---~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~ 147 (449)
T PLN02173 73 A---G--SVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYI 147 (449)
T ss_pred c---c--CHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHh
Confidence 1 1 111222222235566777777652 1245 999999999999999999999999999998888765543211
Q ss_pred cccccccCCCCCccccCCCCCcccccccc---------c-hHHHHHHHHHhhccccceEEEcCchhhhHHHHHHHHhhcC
Q 011339 164 STVQENVTSNSDYLVVPGLPDQIEMTKVR---------E-KWKDFGEMVLAADMKSYGIIINTFEELELEYVKECKKTKG 233 (488)
Q Consensus 164 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~ 233 (488)
.. ......+|++|. ++...+. . .+..+.+.+ ....+++++++|||.+||+++.+.++..
T Consensus 148 ---~~----~~~~~~~pg~p~-l~~~dlp~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~~~~~-- 216 (449)
T PLN02173 148 ---NN----GSLTLPIKDLPL-LELQDLPTFVTPTGSHLAYFEMVLQQF-TNFDKADFVLVNSFHDLDLHENELLSKV-- 216 (449)
T ss_pred ---cc----CCccCCCCCCCC-CChhhCChhhcCCCCchHHHHHHHHHH-hhhccCCEEEEeCHHHhhHHHHHHHHhc--
Confidence 00 112234667664 1111111 1 122233333 3466788999999999999999888653
Q ss_pred CceEEeCCCCCCCC--Ccc-hhhhhCCCCc--ccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhcCCCCe
Q 011339 234 GKVWCLGPVSLCNK--QDI-DKAERGKKAA--VDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPF 308 (488)
Q Consensus 234 ~~~~~vGpl~~~~~--~~~-~~~~~~~~~~--~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~ 308 (488)
++++.|||+++... ... .........| ..+++|.+||+.++++++|||||||....+.+++.+++.++ .+..|
T Consensus 217 ~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~f 294 (449)
T PLN02173 217 CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSY 294 (449)
T ss_pred CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCE
Confidence 46999999974311 000 0000001112 23456999999998899999999999999999999999999 56789
Q ss_pred EEEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEEecccchhhhhccCCcccccccCCchhHHHHhhcCCCEeecCccccc
Q 011339 309 IWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQ 388 (488)
Q Consensus 309 v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~DQ 388 (488)
+|++.... . .. +|+++.++..+.|+++.+|+||.+||+|+++++|||||||||++|++++|||||++|+++||
T Consensus 295 lWvvr~~~-~----~~--lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ 367 (449)
T PLN02173 295 LWVVRASE-E----SK--LPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQ 367 (449)
T ss_pred EEEEeccc-h----hc--ccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcc
Confidence 99997432 1 01 78888777767889999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCCchHH
Q 011339 389 FWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETRSSSL 468 (488)
Q Consensus 389 ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~ 468 (488)
+.||+++++.+|+|+.+...+ .+..++.++|.++|+++|.| ++++++|+||+++++++++++++|||+..
T Consensus 368 ~~Na~~v~~~~g~Gv~v~~~~---------~~~~~~~e~v~~av~~vm~~-~~~~~~r~~a~~~~~~a~~Av~~gGSS~~ 437 (449)
T PLN02173 368 PMNAKYIQDVWKVGVRVKAEK---------ESGIAKREEIEFSIKEVMEG-EKSKEMKENAGKWRDLAVKSLSEGGSTDI 437 (449)
T ss_pred hHHHHHHHHHhCceEEEeecc---------cCCcccHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 999999965569999986531 00136999999999999986 44689999999999999999999999999
Q ss_pred HHHHHHHHHHc
Q 011339 469 MIKLLIQDIMQ 479 (488)
Q Consensus 469 ~~~~~i~~~~~ 479 (488)
++++||+.+..
T Consensus 438 ~l~~~v~~~~~ 448 (449)
T PLN02173 438 NINTFVSKIQI 448 (449)
T ss_pred HHHHHHHHhcc
Confidence 99999999864
No 13
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=4e-61 Score=484.64 Aligned_cols=447 Identities=30% Similarity=0.477 Sum_probs=333.1
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCccc
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENF 87 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~ 87 (488)
.+.||+++|+|++||++|++.||+.|+.||+.|||++++.+...+.+.... ...+++++.+|+|..+ |++++.+..
T Consensus 5 ~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~---~~~~i~~~~lp~p~~d-glp~~~~~~ 80 (472)
T PLN02670 5 EVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQ---LSSSITLVSFPLPSVP-GLPSSAESS 80 (472)
T ss_pred CCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhcccc---CCCCeeEEECCCCccC-CCCCCcccc
Confidence 678999999999999999999999999999999999999877655432111 1235999999988664 787665432
Q ss_pred cCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEEecchHHHHHHHhhhcccccc
Q 011339 88 DMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSTVQ 167 (488)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 167 (488)
..... .....+......+.+.+++++++ .++++||+|.+.+|+..+|+++|||.+.++++++..+.+++++......
T Consensus 81 ~~~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~ 157 (472)
T PLN02670 81 TDVPY-TKQQLLKKAFDLLEPPLTTFLET--SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEG 157 (472)
T ss_pred cccch-hhHHHHHHHHHHhHHHHHHHHHh--CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhc
Confidence 21111 11223445556778888999988 6899999999999999999999999999999999888876544221111
Q ss_pred cccCCCCCcc-ccCCC-CC--c--c---cccc-cc------chHHHHHHHHHhhccccceEEEcCchhhhHHHHHHHHhh
Q 011339 168 ENVTSNSDYL-VVPGL-PD--Q--I---EMTK-VR------EKWKDFGEMVLAADMKSYGIIINTFEELELEYVKECKKT 231 (488)
Q Consensus 168 ~~~~~~~~~~-~~p~l-~~--~--~---~~~~-~~------~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~ 231 (488)
.......... .+|++ |. . + .++. .. ..+..+. +......+++++++|||.+||+.+++.+++.
T Consensus 158 ~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~ 236 (472)
T PLN02670 158 GDLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSV-RFGFAIGGSDVVIIRSSPEFEPEWFDLLSDL 236 (472)
T ss_pred ccCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHH-HHHhhcccCCEEEEeCHHHHhHHHHHHHHHh
Confidence 1111111111 23332 21 0 1 1111 00 1122222 2223456788999999999999999999876
Q ss_pred cCCceEEeCCCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhcCCCCeEEE
Q 011339 232 KGGKVWCLGPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWV 311 (488)
Q Consensus 232 ~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~v~~ 311 (488)
++++++.|||+++..... +. ..........+|.+||+++++++||||||||....+.+++.+++.+++.++++|||+
T Consensus 237 ~~~~v~~VGPl~~~~~~~-~~--~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv 313 (472)
T PLN02670 237 YRKPIIPIGFLPPVIEDD-EE--DDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWV 313 (472)
T ss_pred hCCCeEEEecCCcccccc-cc--ccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEE
Confidence 667899999997531110 00 000000112579999999988899999999999999999999999999999999999
Q ss_pred EeCCCCCchhhhhhhhhHHHHHHhcCCCeEEecccchhhhhccCCcccccccCCchhHHHHhhcCCCEeecCcccccchh
Q 011339 312 IRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQFWN 391 (488)
Q Consensus 312 ~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~DQ~~n 391 (488)
+...........++ +|++|.++....++++.+|+||.+||+|+++++|||||||||++|++++|||||++|+++||+.|
T Consensus 314 ~r~~~~~~~~~~~~-lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~N 392 (472)
T PLN02670 314 LRNEPGTTQNALEM-LPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLN 392 (472)
T ss_pred EcCCcccccchhhc-CChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHH
Confidence 97532011111122 89999888877788889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Q 011339 392 EKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETRSSSLMIK 471 (488)
Q Consensus 392 a~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~ 471 (488)
|+++ +++|+|+.++..+ .++.++.++|+++|+++|.| +++++||+||+++++.+++. +.-..+++
T Consensus 393 a~~v-~~~g~Gv~l~~~~---------~~~~~~~e~i~~av~~vm~~-~~g~~~r~~a~~l~~~~~~~----~~~~~~~~ 457 (472)
T PLN02670 393 TRLL-HGKKLGLEVPRDE---------RDGSFTSDSVAESVRLAMVD-DAGEEIRDKAKEMRNLFGDM----DRNNRYVD 457 (472)
T ss_pred HHHH-HHcCeeEEeeccc---------cCCcCcHHHHHHHHHHHhcC-cchHHHHHHHHHHHHHHhCc----chhHHHHH
Confidence 9999 5999999997531 01248999999999999986 45678999999999998754 44568899
Q ss_pred HHHHHHHcCC
Q 011339 472 LLIQDIMQQP 481 (488)
Q Consensus 472 ~~i~~~~~~~ 481 (488)
++++.+.+..
T Consensus 458 ~~~~~l~~~~ 467 (472)
T PLN02670 458 ELVHYLRENR 467 (472)
T ss_pred HHHHHHHHhc
Confidence 9999988766
No 14
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=5.4e-61 Score=481.19 Aligned_cols=436 Identities=26% Similarity=0.450 Sum_probs=332.9
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHC-CCeEEEEeCCcchhhhH--HHHHhhhcCCCCeEEEEeeCCccccCC-CCC
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQH-GAAITIVTTPANAARFK--TVVARAMQSGLPLQLIEIQFPYQEAGV-PEG 83 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~l-~~~ 83 (488)
.+.||+++|+|++||++|++.||+.|+.+ |..|||++++.+...+. ..+... ....+++++.+|++..+ ++ +.+
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~-~~~~~i~~~~lp~~~~~-~l~~~~ 79 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAA-AARTTCQITEIPSVDVD-NLVEPD 79 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccc-cCCCceEEEECCCCccc-cCCCCC
Confidence 46799999999999999999999999987 99999998886554331 111111 01125899999865432 33 211
Q ss_pred CccccCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCC-cEEEecchHHHHHHHhhhc
Q 011339 84 CENFDMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIP-RISFHGFSCFCLLCLYNLH 162 (488)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP-~v~~~~~~~~~~~~~~~~~ 162 (488)
. +....+......+.+.+++++++...+|++||+|.+.+|+..+|+++||| .+.+++++++.+.++++++
T Consensus 80 --------~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~ 150 (470)
T PLN03015 80 --------A-TIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLP 150 (470)
T ss_pred --------c-cHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhh
Confidence 0 22234555556778888888887434789999999999999999999999 5888888888877777664
Q ss_pred ccc-cc-cccCCCCCccccCCCCCcccccccc--------chHHHHHHHHHhhccccceEEEcCchhhhHHHHHHHHhhc
Q 011339 163 TST-VQ-ENVTSNSDYLVVPGLPDQIEMTKVR--------EKWKDFGEMVLAADMKSYGIIINTFEELELEYVKECKKTK 232 (488)
Q Consensus 163 ~~~-~~-~~~~~~~~~~~~p~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~ 232 (488)
... .. ........+..+||+|. +....+. ..+..+.... +...+++++++|||++||+.+++.+++.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~vPg~p~-l~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~a~gvlvNTf~eLE~~~~~~l~~~~ 228 (470)
T PLN03015 151 VLDTVVEGEYVDIKEPLKIPGCKP-VGPKELMETMLDRSDQQYKECVRSG-LEVPMSDGVLVNTWEELQGNTLAALREDM 228 (470)
T ss_pred hhhcccccccCCCCCeeeCCCCCC-CChHHCCHhhcCCCcHHHHHHHHHH-HhcccCCEEEEechHHHhHHHHHHHHhhc
Confidence 321 11 10001123456788864 2211111 1233344333 34678999999999999999999887642
Q ss_pred ------CCceEEeCCCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhcCCC
Q 011339 233 ------GGKVWCLGPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKK 306 (488)
Q Consensus 233 ------~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~ 306 (488)
.++++.|||++..... ...+.+|.+|||.+++++||||||||....+.+++.+++.+|+.+++
T Consensus 229 ~~~~~~~~~v~~VGPl~~~~~~-----------~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~ 297 (470)
T PLN03015 229 ELNRVMKVPVYPIGPIVRTNVH-----------VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQ 297 (470)
T ss_pred ccccccCCceEEecCCCCCccc-----------ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCC
Confidence 2569999999742110 01235799999999889999999999999999999999999999999
Q ss_pred CeEEEEeCCCC-------CchhhhhhhhhHHHHHHhcCCCeEEecccchhhhhccCCcccccccCCchhHHHHhhcCCCE
Q 011339 307 PFIWVIRGGNN-------TSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPL 379 (488)
Q Consensus 307 ~~v~~~~~~~~-------~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~IthgG~gs~~eal~~GvP~ 379 (488)
+|||++..... +.++..++ +|++|.++.....+++.+|+||.+||+|+++++|||||||||++|++++||||
T Consensus 298 ~FlWv~r~~~~~~~~~~~~~~~~~~~-lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~ 376 (470)
T PLN03015 298 RFVWVLRRPASYLGASSSDDDQVSAS-LPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPI 376 (470)
T ss_pred cEEEEEecCccccccccccccchhhc-CChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCE
Confidence 99999963210 01112223 88999888887788888999999999999999999999999999999999999
Q ss_pred eecCcccccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHcc-CcchHHHHHHHHHHHHHHHH
Q 011339 380 ITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDE-GGETDDRRKRAREFQIMAKR 458 (488)
Q Consensus 380 v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~-~~~~~~~~~~a~~l~~~~~~ 458 (488)
|++|+++||+.||+++++.+|+|+++.... ....++.++|.++|+++|.+ +++++.+|+||++|++++++
T Consensus 377 v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~---------~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~ 447 (470)
T PLN03015 377 VAWPLYAEQWMNATLLTEEIGVAVRTSELP---------SEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSER 447 (470)
T ss_pred EecccccchHHHHHHHHHHhCeeEEecccc---------cCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHH
Confidence 999999999999999866999999996210 00258999999999999963 35678999999999999999
Q ss_pred HHhcCCchHHHHHHHHHHH
Q 011339 459 ATEETRSSSLMIKLLIQDI 477 (488)
Q Consensus 459 ~~~~gg~~~~~~~~~i~~~ 477 (488)
|+++||||..+++++|+++
T Consensus 448 Av~eGGSS~~nl~~~~~~~ 466 (470)
T PLN03015 448 AWSHGGSSYNSLFEWAKRC 466 (470)
T ss_pred HhcCCCcHHHHHHHHHHhc
Confidence 9999999999999999886
No 15
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1e-60 Score=481.19 Aligned_cols=444 Identities=25% Similarity=0.435 Sum_probs=323.5
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCC--CeEEEEeCCcch-hhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCC
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHG--AAITIVTTPANA-ARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGC 84 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rG--H~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~ 84 (488)
++.||+++|+|++||++|++.||+.|+.+| ..|||++++.+. ..+...+........+++|+.+|+... .+..
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~---~~~~- 77 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEE---KPTL- 77 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCC---CCcc-
Confidence 668999999999999999999999999998 999999998765 333333322111112589999883211 1110
Q ss_pred ccccCCCchhhHHHHHHHHHHh----hHHHHHHHHhc--CCCC-eEEEEcCCCcchHHHHHhcCCCcEEEecchHHHHHH
Q 011339 85 ENFDMLHSTDLVSNFFKSLRLL----QLPLENLLKEL--TPKP-SCIVSDTCYPWTVDTAARFNIPRISFHGFSCFCLLC 157 (488)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~--~~~p-D~vv~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~ 157 (488)
. . .. +....+....... .+.+.+++++. +.+| ++||+|.+.+|+..+|+++|||.+.|++++++.+.+
T Consensus 78 ~--~-~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~ 152 (468)
T PLN02207 78 G--G-TQ--SVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAM 152 (468)
T ss_pred c--c-cc--CHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHH
Confidence 0 0 01 1122233333223 44566666542 1234 999999999999999999999999999999998888
Q ss_pred Hhhhccccc-cccc--CCCCCccccCCCCCcccccccc------chHHHHHHHHHhhccccceEEEcCchhhhHHHHHHH
Q 011339 158 LYNLHTSTV-QENV--TSNSDYLVVPGLPDQIEMTKVR------EKWKDFGEMVLAADMKSYGIIINTFEELELEYVKEC 228 (488)
Q Consensus 158 ~~~~~~~~~-~~~~--~~~~~~~~~p~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~ 228 (488)
+++.+.... .... .....+..+||++..+....+. ..+..+. +......+.+++++|||++||+++++.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~~~~~~~-~~~~~~~~~~~vlvNtf~~LE~~~~~~~ 231 (468)
T PLN02207 153 MQYLADRHSKDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVEDGYDAYV-KLAILFTKANGILVNSSFDIEPYSVNHF 231 (468)
T ss_pred HHHhhhccccccccCcCCCCCeEECCCCCCCCChHHCcchhcCCccHHHHH-HHHHhcccCCEEEEEchHHHhHHHHHHH
Confidence 776643211 1101 1111334578873223322221 1133333 3333567889999999999999998888
Q ss_pred Hh-hcCCceEEeCCCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhcCCCC
Q 011339 229 KK-TKGGKVWCLGPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKP 307 (488)
Q Consensus 229 ~~-~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~ 307 (488)
+. +..++++.|||++....... +......+++|.+||+++++++||||||||....+.+++++++.+++.++++
T Consensus 232 ~~~~~~p~v~~VGPl~~~~~~~~-----~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~ 306 (468)
T PLN02207 232 LDEQNYPSVYAVGPIFDLKAQPH-----PEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYR 306 (468)
T ss_pred HhccCCCcEEEecCCcccccCCC-----CccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCc
Confidence 64 34478999999976432110 0000112468999999998889999999999999999999999999999999
Q ss_pred eEEEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEEecccchhhhhccCCcccccccCCchhHHHHhhcCCCEeecCcccc
Q 011339 308 FIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGD 387 (488)
Q Consensus 308 ~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~D 387 (488)
|||+++... . ...++ +|++|.++.. .|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++|
T Consensus 307 flW~~r~~~-~--~~~~~-lp~~f~er~~-~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~D 381 (468)
T PLN02207 307 FLWSLRTEE-V--TNDDL-LPEGFLDRVS-GRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAE 381 (468)
T ss_pred EEEEEeCCC-c--ccccc-CCHHHHhhcC-CCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCcccc
Confidence 999998532 1 01123 7888876654 56677899999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCCchH
Q 011339 388 QFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETRSSS 467 (488)
Q Consensus 388 Q~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~ 467 (488)
|+.||+++++.+|+|+++...... ++.+.++.++|.++|+++|.+ ++++||+||+++++.+++|+++||||.
T Consensus 382 Q~~Na~~~~~~~gvGv~~~~~~~~------~~~~~v~~e~i~~av~~vm~~--~~~~~r~~a~~l~~~a~~A~~~GGSS~ 453 (468)
T PLN02207 382 QQLNAFLMVKELKLAVELKLDYRV------HSDEIVNANEIETAIRCVMNK--DNNVVRKRVMDISQMIQRATKNGGSSF 453 (468)
T ss_pred chhhHHHHHHHhCceEEEeccccc------ccCCcccHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 999999875569999988421000 001246999999999999973 356999999999999999999999999
Q ss_pred HHHHHHHHHHHc
Q 011339 468 LMIKLLIQDIMQ 479 (488)
Q Consensus 468 ~~~~~~i~~~~~ 479 (488)
.++++||+++..
T Consensus 454 ~~l~~~v~~~~~ 465 (468)
T PLN02207 454 AAIEKFIHDVIG 465 (468)
T ss_pred HHHHHHHHHHHh
Confidence 999999999864
No 16
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=2.8e-60 Score=480.03 Aligned_cols=421 Identities=27% Similarity=0.447 Sum_probs=315.5
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCccc
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENF 87 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~ 87 (488)
++.||+++|+|++||++|++.||+.|+.+|++|||++++.+...+.+.+.. ..+++++.+|. +++++.
T Consensus 5 ~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~----~~~i~~v~lp~-----g~~~~~--- 72 (448)
T PLN02562 5 QRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDP----KLGITFMSISD-----GQDDDP--- 72 (448)
T ss_pred CCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCC----CCCEEEEECCC-----CCCCCc---
Confidence 678999999999999999999999999999999999999876655443211 12588888763 333211
Q ss_pred cCCCchhhHHHHHHHHH-HhhHHHHHHHHhcC--CCCeEEEEcCCCcchHHHHHhcCCCcEEEecchHHHHHHHhhhccc
Q 011339 88 DMLHSTDLVSNFFKSLR-LLQLPLENLLKELT--PKPSCIVSDTCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTS 164 (488)
Q Consensus 88 ~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~--~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~ 164 (488)
+. ++. .+..... .+.+.+.++++... .++++||+|.+.+|+..+|+++|||.+.|+++++..+.++++++..
T Consensus 73 ---~~-~~~-~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~ 147 (448)
T PLN02562 73 ---PR-DFF-SIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPEL 147 (448)
T ss_pred ---cc-cHH-HHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHH
Confidence 11 222 3333444 46777777777631 2358999999999999999999999999999999888876655421
Q ss_pred cccccc---CC--CCCc-cccCCCCCccc---cccc------cchHHHHHHHHHhhccccceEEEcCchhhhHHHHHHHH
Q 011339 165 TVQENV---TS--NSDY-LVVPGLPDQIE---MTKV------REKWKDFGEMVLAADMKSYGIIINTFEELELEYVKECK 229 (488)
Q Consensus 165 ~~~~~~---~~--~~~~-~~~p~l~~~~~---~~~~------~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~ 229 (488)
...... +. ...+ ..+|++|. ++ ++.. .+.....+.+..+...+++++++|||.+||+.+++.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~Pg~~~-l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~ 226 (448)
T PLN02562 148 VRTGLISETGCPRQLEKICVLPEQPL-LSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQ 226 (448)
T ss_pred hhccccccccccccccccccCCCCCC-CChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHH
Confidence 111100 00 0011 24677753 21 1110 11112222233344567889999999999998888765
Q ss_pred h----hcCCceEEeCCCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCcc-CCChHHHHHHHHHHhcC
Q 011339 230 K----TKGGKVWCLGPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSIC-NLTSSQMIELGLGLEAS 304 (488)
Q Consensus 230 ~----~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~-~~~~~~~~~~~~a~~~~ 304 (488)
. +..++++.|||++....... .....+..+.+|.+||++++++++|||||||+. ..+.+++++++.+++..
T Consensus 227 ~~~~~~~~~~v~~iGpl~~~~~~~~----~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~ 302 (448)
T PLN02562 227 ASYNNGQNPQILQIGPLHNQEATTI----TKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEAS 302 (448)
T ss_pred hhhccccCCCEEEecCccccccccc----CCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHC
Confidence 3 23578999999976432110 001112234678899999988899999999987 57889999999999999
Q ss_pred CCCeEEEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEEecccchhhhhccCCcccccccCCchhHHHHhhcCCCEeecCc
Q 011339 305 KKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPL 384 (488)
Q Consensus 305 ~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~ 384 (488)
+.+|||++.... . . . +|+++.++. ++|+++.+|+||.+||+|+++++|||||||||++|++++|||||++|+
T Consensus 303 g~~fiW~~~~~~-~-~---~--l~~~~~~~~-~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~ 374 (448)
T PLN02562 303 GRPFIWVLNPVW-R-E---G--LPPGYVERV-SKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPV 374 (448)
T ss_pred CCCEEEEEcCCc-h-h---h--CCHHHHHHh-ccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCc
Confidence 999999996532 0 0 1 677776554 467888899999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCC
Q 011339 385 YGDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETR 464 (488)
Q Consensus 385 ~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg 464 (488)
++||+.||+++++.+|+|+.+. .++.++|.++|+++|.|+ +||+||++++++++++ ++||
T Consensus 375 ~~DQ~~na~~~~~~~g~g~~~~---------------~~~~~~l~~~v~~~l~~~----~~r~~a~~l~~~~~~~-~~gG 434 (448)
T PLN02562 375 AGDQFVNCAYIVDVWKIGVRIS---------------GFGQKEVEEGLRKVMEDS----GMGERLMKLRERAMGE-EARL 434 (448)
T ss_pred ccchHHHHHHHHHHhCceeEeC---------------CCCHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHhc-CCCC
Confidence 9999999999963479998883 279999999999999887 9999999999999887 7789
Q ss_pred chHHHHHHHHHHHH
Q 011339 465 SSSLMIKLLIQDIM 478 (488)
Q Consensus 465 ~~~~~~~~~i~~~~ 478 (488)
||..++++||+++.
T Consensus 435 SS~~nl~~~v~~~~ 448 (448)
T PLN02562 435 RSMMNFTTLKDELK 448 (448)
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999999873
No 17
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=6.2e-60 Score=482.78 Aligned_cols=447 Identities=28% Similarity=0.417 Sum_probs=321.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCC--CeEEEEeCCcchhhh---HHHHHhhhc-CCCCeEEEEeeCCccccCCCC
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHG--AAITIVTTPANAARF---KTVVARAMQ-SGLPLQLIEIQFPYQEAGVPE 82 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rG--H~Vt~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~~ 82 (488)
++||+++|+|++||++|++.||+.|+.+| ..|||++++.+...+ ...+..... ...+|+++.+|++.. +.
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~----~~ 77 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQ----PT 77 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCC----Cc
Confidence 57999999999999999999999999998 889999998765432 111111100 123589998875421 11
Q ss_pred CCccccCCCchhhHHHHHHHHHHhhHHHHHHHHhc---CCCC-eEEEEcCCCcchHHHHHhcCCCcEEEecchHHHHHHH
Q 011339 83 GCENFDMLHSTDLVSNFFKSLRLLQLPLENLLKEL---TPKP-SCIVSDTCYPWTVDTAARFNIPRISFHGFSCFCLLCL 158 (488)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~p-D~vv~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~ 158 (488)
. . .......+......+.+.+.+++... ..+| ++||+|.+++|+..+|+.+|||.+.|++++++.+.++
T Consensus 78 ~-~------~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~ 150 (481)
T PLN02554 78 T-E------DPTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQ 150 (481)
T ss_pred c-c------chHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHH
Confidence 0 0 01222222222234455555555431 1234 8999999999999999999999999999999999988
Q ss_pred hhhcccccc---c--ccCCCCCccccCCCCCcccccccc-----chHHHHHHHHHhhccccceEEEcCchhhhHHHHHHH
Q 011339 159 YNLHTSTVQ---E--NVTSNSDYLVVPGLPDQIEMTKVR-----EKWKDFGEMVLAADMKSYGIIINTFEELELEYVKEC 228 (488)
Q Consensus 159 ~~~~~~~~~---~--~~~~~~~~~~~p~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~ 228 (488)
++++..... . .......+..+|+++..++...+. +.+...+.+......+++++++|++.+||+.+...+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l 230 (481)
T PLN02554 151 LHVQMLYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLSKEWLPLFLAQARRFREMKGILVNTVAELEPQALKFF 230 (481)
T ss_pred HhhhhhccccccCccccCCCCceeECCCCCCCCCHHHCCCcccCHHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHH
Confidence 877542111 0 111111234578774223221111 122223333344567789999999999999988888
Q ss_pred Hhh--cCCceEEeCCCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhcCCC
Q 011339 229 KKT--KGGKVWCLGPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKK 306 (488)
Q Consensus 229 ~~~--~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~ 306 (488)
... ..++++.|||++...... . .. ....+.+|.+|++++++++||||||||+...+.+++++++.+++..++
T Consensus 231 ~~~~~~~~~v~~vGpl~~~~~~~-~----~~-~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~ 304 (481)
T PLN02554 231 SGSSGDLPPVYPVGPVLHLENSG-D----DS-KDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGH 304 (481)
T ss_pred HhcccCCCCEEEeCCCccccccc-c----cc-ccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCC
Confidence 752 337899999994322110 0 00 012456899999999888999999999988999999999999999999
Q ss_pred CeEEEEeCCCC--------CchhhhhhhhhHHHHHHhcCCCeEEecccchhhhhccCCcccccccCCchhHHHHhhcCCC
Q 011339 307 PFIWVIRGGNN--------TSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVP 378 (488)
Q Consensus 307 ~~v~~~~~~~~--------~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~IthgG~gs~~eal~~GvP 378 (488)
+|||+++.... ...+..++ +|++|.++.. +|+++.+|+||.+||+|+++++|||||||||++|++++|||
T Consensus 305 ~flW~~~~~~~~~~~~~~~~~~~~~~~-lp~~~~~r~~-~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP 382 (481)
T PLN02554 305 RFLWSLRRASPNIMKEPPGEFTNLEEI-LPEGFLDRTK-DIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVP 382 (481)
T ss_pred CeEEEEcCCcccccccccccccchhhh-CChHHHHHhc-cCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCC
Confidence 99999975210 00012222 5888876654 56677899999999999999999999999999999999999
Q ss_pred EeecCcccccchhHH-HHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHc-cCcchHHHHHHHHHHHHHH
Q 011339 379 LITWPLYGDQFWNEK-LIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMD-EGGETDDRRKRAREFQIMA 456 (488)
Q Consensus 379 ~v~~P~~~DQ~~na~-rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~-~~~~~~~~~~~a~~l~~~~ 456 (488)
||++|+++||+.||+ ++ +++|+|+.++... ...+ ..+....++.++|.++|+++|+ |+ +||+||+++++++
T Consensus 383 ~l~~P~~~DQ~~Na~~~v-~~~g~Gv~l~~~~-~~~~-~~~~~~~~~~e~l~~av~~vm~~~~----~~r~~a~~l~~~~ 455 (481)
T PLN02554 383 MAAWPLYAEQKFNAFEMV-EELGLAVEIRKYW-RGDL-LAGEMETVTAEEIERGIRCLMEQDS----DVRKRVKEMSEKC 455 (481)
T ss_pred EEecCccccchhhHHHHH-HHhCceEEeeccc-cccc-cccccCeEcHHHHHHHHHHHhcCCH----HHHHHHHHHHHHH
Confidence 999999999999995 57 6999999996410 0000 0001125899999999999996 44 9999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHHHcCC
Q 011339 457 KRATEETRSSSLMIKLLIQDIMQQP 481 (488)
Q Consensus 457 ~~~~~~gg~~~~~~~~~i~~~~~~~ 481 (488)
++++++|||+..++++||+++.++.
T Consensus 456 ~~av~~gGss~~~l~~lv~~~~~~~ 480 (481)
T PLN02554 456 HVALMDGGSSHTALKKFIQDVTKNI 480 (481)
T ss_pred HHHhcCCChHHHHHHHHHHHHHhhC
Confidence 9999999999999999999998764
No 18
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=4.2e-60 Score=475.27 Aligned_cols=428 Identities=28% Similarity=0.488 Sum_probs=312.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCC--CeEEE--EeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCC
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHG--AAITI--VTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGC 84 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rG--H~Vt~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~ 84 (488)
.-||+++|+|++||++|++.||+.|+.+| +.||+ ++++.+...+.+.+.......++++++.+|++.. .+.+.
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~---~~~~~ 79 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTP---YSSSS 79 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCC---CCCcc
Confidence 34899999999999999999999999998 55665 4444332222221111111123589998875421 11111
Q ss_pred ccccCCCchhhHHHHHHHHHHhhHHHHHHHHhcC--CCCeEEEEcCCCcchHHHHHhcCCCcEEEecchHHHHHHHhhhc
Q 011339 85 ENFDMLHSTDLVSNFFKSLRLLQLPLENLLKELT--PKPSCIVSDTCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLH 162 (488)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~ 162 (488)
. . .......+..........+.+++++.. .++++||+|.+.+|+..+|+.+|||.+.|++++++.+.++.+.+
T Consensus 80 ~--~---~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~ 154 (451)
T PLN03004 80 T--S---RHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLP 154 (451)
T ss_pred c--c---ccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHH
Confidence 1 1 111122333333455566666666531 24599999999999999999999999999999999998887754
Q ss_pred ccc-c--ccccCCCCCccccCCCCCcccccccc-------chHHHHHHHHHhhccccceEEEcCchhhhHHHHHHHHhhc
Q 011339 163 TST-V--QENVTSNSDYLVVPGLPDQIEMTKVR-------EKWKDFGEMVLAADMKSYGIIINTFEELELEYVKECKKTK 232 (488)
Q Consensus 163 ~~~-~--~~~~~~~~~~~~~p~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~ 232 (488)
... . .... ....+..+||+|. ++...+. ......+.+......+++++++|||.+||+.+++.+++.+
T Consensus 155 ~~~~~~~~~~~-~~~~~v~iPg~p~-l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~ 232 (451)
T PLN03004 155 TIDETTPGKNL-KDIPTVHIPGVPP-MKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEEL 232 (451)
T ss_pred hcccccccccc-ccCCeecCCCCCC-CChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcC
Confidence 311 0 0111 1112345777764 2111111 1112223333344567889999999999999999997654
Q ss_pred C-CceEEeCCCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhcCCCCeEEE
Q 011339 233 G-GKVWCLGPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWV 311 (488)
Q Consensus 233 ~-~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~v~~ 311 (488)
. ++++.|||++...... . .. .+ .+.+|.+||+.+++++||||||||....+.+++++++.+|+.++.+|||+
T Consensus 233 ~~~~v~~vGPl~~~~~~~-~----~~-~~-~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~ 305 (451)
T PLN03004 233 CFRNIYPIGPLIVNGRIE-D----RN-DN-KAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWV 305 (451)
T ss_pred CCCCEEEEeeeccCcccc-c----cc-cc-hhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEE
Confidence 3 6899999997422100 0 00 11 24579999999988999999999999999999999999999999999999
Q ss_pred EeCCCCCc---hhhhhhhhhHHHHHHhcCCCeEEecccchhhhhccCCcccccccCCchhHHHHhhcCCCEeecCccccc
Q 011339 312 IRGGNNTS---KEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQ 388 (488)
Q Consensus 312 ~~~~~~~~---~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~DQ 388 (488)
+....... .....+ +|++|.++....|+++.+|+||.+||+|+++++|||||||||++|++++|||||++|+++||
T Consensus 306 ~r~~~~~~~~~~~~~~~-lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ 384 (451)
T PLN03004 306 VRNPPELEKTELDLKSL-LPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQ 384 (451)
T ss_pred EcCCccccccccchhhh-CChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccc
Confidence 98531000 012223 78899999988999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCCchHH
Q 011339 389 FWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETRSSSL 468 (488)
Q Consensus 389 ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~ 468 (488)
+.||+++++++|+|++++..+ .+.++.++|+++|+++|+|+ +||+|++++++.+++|+++||||.+
T Consensus 385 ~~na~~~~~~~g~g~~l~~~~----------~~~~~~e~l~~av~~vm~~~----~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 385 RFNRVMIVDEIKIAISMNESE----------TGFVSSTEVEKRVQEIIGEC----PVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred hhhHHHHHHHhCceEEecCCc----------CCccCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 999999953589999997531 01479999999999999876 9999999999999999999999854
No 19
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.5e-59 Score=478.25 Aligned_cols=433 Identities=30% Similarity=0.470 Sum_probs=321.2
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCc
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQH--GAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCE 85 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 85 (488)
.+.||+++|+|++||++|++.||++|++| ||+|||++++.+...+++.. ...+++|+.+|+ +++++..
T Consensus 9 ~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~-----~~~gi~fv~lp~-----~~p~~~~ 78 (459)
T PLN02448 9 TSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDP-----KPDNIRFATIPN-----VIPSELV 78 (459)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccC-----CCCCEEEEECCC-----CCCCccc
Confidence 78999999999999999999999999999 99999999998776555421 113689988873 3443321
Q ss_pred cccCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEEecchHHHHHHHhhhcccc
Q 011339 86 NFDMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTST 165 (488)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 165 (488)
.. . +....+....+.+...+.++++....++|+||+|.+++|+..+|+++|||++.++++++..+..+.+++...
T Consensus 79 ~~---~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~ 153 (459)
T PLN02448 79 RA---A--DFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLP 153 (459)
T ss_pred cc---c--CHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhh
Confidence 11 1 122222222335666777777763246899999999999999999999999999999998887766654221
Q ss_pred cccc--cCC---CCC-ccccCCCCCcccccccc-------ch-HHHHHHHHHhhccccceEEEcCchhhhHHHHHHHHhh
Q 011339 166 VQEN--VTS---NSD-YLVVPGLPDQIEMTKVR-------EK-WKDFGEMVLAADMKSYGIIINTFEELELEYVKECKKT 231 (488)
Q Consensus 166 ~~~~--~~~---~~~-~~~~p~l~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~ 231 (488)
.... ... ... ...+|+++. +....+. .. +..+...+ ....+++++++|||.+||+.+++.+++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~iPg~~~-l~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l~~~ 231 (459)
T PLN02448 154 QNGHFPVELSESGEERVDYIPGLSS-TRLSDLPPIFHGNSRRVLKRILEAF-SWVPKAQYLLFTSFYELEAQAIDALKSK 231 (459)
T ss_pred hccCCCCccccccCCccccCCCCCC-CChHHCchhhcCCchHHHHHHHHHH-hhcccCCEEEEccHHHhhHHHHHHHHhh
Confidence 1000 000 001 113566543 1111111 11 22333333 3345678999999999999999999877
Q ss_pred cCCceEEeCCCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhcCCCCeEEE
Q 011339 232 KGGKVWCLGPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWV 311 (488)
Q Consensus 232 ~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~v~~ 311 (488)
++++++.|||+.+........ . .......+.++.+|++.++++++|||||||....+.+++++++.+++..+..|||+
T Consensus 232 ~~~~~~~iGP~~~~~~~~~~~-~-~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~ 309 (459)
T PLN02448 232 FPFPVYPIGPSIPYMELKDNS-S-SSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWV 309 (459)
T ss_pred cCCceEEecCcccccccCCCc-c-ccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEE
Confidence 767899999996532110000 0 00001123589999999988999999999999888999999999999999999998
Q ss_pred EeCCCCCchhhhhhhhhHHHHHHhcCCCeEEecccchhhhhccCCcccccccCCchhHHHHhhcCCCEeecCcccccchh
Q 011339 312 IRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQFWN 391 (488)
Q Consensus 312 ~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~DQ~~n 391 (488)
+.... . ++.+. .+.|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.|
T Consensus 310 ~~~~~---~---------~~~~~-~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~n 376 (459)
T PLN02448 310 ARGEA---S---------RLKEI-CGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLN 376 (459)
T ss_pred EcCch---h---------hHhHh-ccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhh
Confidence 76432 1 11111 13578888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccC-cchHHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 011339 392 EKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEG-GETDDRRKRAREFQIMAKRATEETRSSSLMI 470 (488)
Q Consensus 392 a~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~-~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~ 470 (488)
|+++++.+|+|+.+.... +....+++++|+++|+++|.|+ +++++||+||+++++++++++++|||+..++
T Consensus 377 a~~v~~~~g~G~~~~~~~--------~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l 448 (459)
T PLN02448 377 SKLIVEDWKIGWRVKREV--------GEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNL 448 (459)
T ss_pred HHHHHHHhCceEEEeccc--------ccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 999963479999986320 0002479999999999999875 5788999999999999999999999999999
Q ss_pred HHHHHHHHcC
Q 011339 471 KLLIQDIMQQ 480 (488)
Q Consensus 471 ~~~i~~~~~~ 480 (488)
++||+.+++-
T Consensus 449 ~~~v~~~~~~ 458 (459)
T PLN02448 449 DAFIRDISQG 458 (459)
T ss_pred HHHHHHHhcc
Confidence 9999999863
No 20
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=2.5e-59 Score=470.22 Aligned_cols=433 Identities=25% Similarity=0.444 Sum_probs=314.3
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHH-CCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCcc
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQ-HGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCEN 86 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~ 86 (488)
++.||+++|+|++||++|++.||+.|++ +|+.|||++++.+.. +..+... ....+++|+.++ ++++++...
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~--~~~~~~~-~~~~~i~~~~i~-----dglp~g~~~ 73 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIH--RSMIPNH-NNVENLSFLTFS-----DGFDDGVIS 73 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhh--hhhhccC-CCCCCEEEEEcC-----CCCCCcccc
Confidence 4579999999999999999999999996 699999999985421 1111111 111258888875 367665431
Q ss_pred ccCCCchhhHHHHHHHHHHhhHHHHHHHHhc---CCCCeEEEEcCCCcchHHHHHhcCCCcEEEecchHHHHHHHhhhcc
Q 011339 87 FDMLHSTDLVSNFFKSLRLLQLPLENLLKEL---TPKPSCIVSDTCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHT 163 (488)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~ 163 (488)
.. . +....+......+.+.+.+++++. +.++++||+|.+.+|+..+|+.+|||.+.|++++++.+.++++...
T Consensus 74 ~~--~--~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~ 149 (455)
T PLN02152 74 NT--D--DVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYST 149 (455)
T ss_pred cc--c--cHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhc
Confidence 11 1 222334444445566666666652 1345999999999999999999999999999999999888776542
Q ss_pred cccccccCCCCCccccCCCCCcccccccc---------chHHHHHHHHHhhcc--ccceEEEcCchhhhHHHHHHHHhhc
Q 011339 164 STVQENVTSNSDYLVVPGLPDQIEMTKVR---------EKWKDFGEMVLAADM--KSYGIIINTFEELELEYVKECKKTK 232 (488)
Q Consensus 164 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~~---------~~~~~~~~~~~~~~~--~~~~~l~~s~~~le~~~~~~~~~~~ 232 (488)
.. .....+|++|. ++...+. ..+...+.+..+... ..+++++|||++||+.+++.++.
T Consensus 150 ~~--------~~~~~iPglp~-l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-- 218 (455)
T PLN02152 150 GN--------NSVFEFPNLPS-LEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN-- 218 (455)
T ss_pred cC--------CCeeecCCCCC-CchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc--
Confidence 11 12334667653 2111111 111222223333222 24699999999999999988854
Q ss_pred CCceEEeCCCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhcCCCCeEEEE
Q 011339 233 GGKVWCLGPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVI 312 (488)
Q Consensus 233 ~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~v~~~ 312 (488)
.+++.|||+++...............+..+.+|.+||+.+++++||||||||....+.+++++++.+|+.++.+|||++
T Consensus 219 -~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~ 297 (455)
T PLN02152 219 -IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVI 297 (455)
T ss_pred -CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 2699999997532100000000001122345899999999888999999999999999999999999999999999999
Q ss_pred eCCCCC-----chhhhhhhhhHHHHHHhcCCCeEEecccchhhhhccCCcccccccCCchhHHHHhhcCCCEeecCcccc
Q 011339 313 RGGNNT-----SKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGD 387 (488)
Q Consensus 313 ~~~~~~-----~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~D 387 (488)
...... ........+|++|.++. ++|.++.+|+||.+||+|+++++||||||+||++|++++|||+|++|+++|
T Consensus 298 r~~~~~~~~~~~~~~~~~~~~~~f~e~~-~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~D 376 (455)
T PLN02152 298 TDKLNREAKIEGEEETEIEKIAGFRHEL-EEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSD 376 (455)
T ss_pred ecCcccccccccccccccccchhHHHhc-cCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEecccccc
Confidence 753100 00000000366776554 456688899999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCCchH
Q 011339 388 QFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETRSSS 467 (488)
Q Consensus 388 Q~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~ 467 (488)
|+.||+++++.+|+|+.+.... .+..+.++|+++|+++|+|+ ++.||+||+++++.+++++.+|||+.
T Consensus 377 Q~~na~~~~~~~~~G~~~~~~~----------~~~~~~e~l~~av~~vm~~~--~~~~r~~a~~~~~~~~~a~~~ggsS~ 444 (455)
T PLN02152 377 QPANAKLLEEIWKTGVRVRENS----------EGLVERGEIRRCLEAVMEEK--SVELRESAEKWKRLAIEAGGEGGSSD 444 (455)
T ss_pred chHHHHHHHHHhCceEEeecCc----------CCcCcHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHcCCCcHH
Confidence 9999999964457777764320 02469999999999999754 44799999999999999999999999
Q ss_pred HHHHHHHHHH
Q 011339 468 LMIKLLIQDI 477 (488)
Q Consensus 468 ~~~~~~i~~~ 477 (488)
.++++||++|
T Consensus 445 ~nl~~li~~i 454 (455)
T PLN02152 445 KNVEAFVKTL 454 (455)
T ss_pred HHHHHHHHHh
Confidence 9999999986
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=7.1e-59 Score=474.27 Aligned_cols=452 Identities=27% Similarity=0.446 Sum_probs=315.8
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCC---eEEEEeCCcchh-hhHHHHHhhhcCCCCeEEEEeeCCccccCCCCC
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGA---AITIVTTPANAA-RFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEG 83 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH---~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~ 83 (488)
++.||+++|+|++||++|++.||+.|+.+|. .||+++++.+.. ..+..+........+|+|+.+|++.. +.+
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~----p~~ 77 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQD----PPP 77 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCC----Ccc
Confidence 5679999999999999999999999999984 466666543322 11222211111113599999885431 211
Q ss_pred CccccCCCchhhHHHHHHHHHHhhHHHHHHHHhc---CC-CCeEEEEcCCCcchHHHHHhcCCCcEEEecchHHHHHHHh
Q 011339 84 CENFDMLHSTDLVSNFFKSLRLLQLPLENLLKEL---TP-KPSCIVSDTCYPWTVDTAARFNIPRISFHGFSCFCLLCLY 159 (488)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~-~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~ 159 (488)
.+.........+...+......+.+.+.+++.+. +. ++++||+|.+.+|+..+|+++|||.+.|++++++.+.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~ 157 (475)
T PLN02167 78 MELFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMK 157 (475)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHH
Confidence 1100000101111111122222333344443221 01 4599999999999999999999999999999999888877
Q ss_pred hhcccc-ccc-cc--CCCCCccccCCCCCcccccccc------chHHHHHHHHHhhccccceEEEcCchhhhHHHHHHHH
Q 011339 160 NLHTST-VQE-NV--TSNSDYLVVPGLPDQIEMTKVR------EKWKDFGEMVLAADMKSYGIIINTFEELELEYVKECK 229 (488)
Q Consensus 160 ~~~~~~-~~~-~~--~~~~~~~~~p~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~ 229 (488)
+++... ... .. .....+..+||++..+....+. ..+..+. ...+...+++++++|||++||+++++.++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~~~~~~~-~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 236 (475)
T PLN02167 158 YLPERHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKESYEAWV-EIAERFPEAKGILVNSFTELEPNAFDYFS 236 (475)
T ss_pred HHHHhccccccccccCCCCCeeECCCCCCCCChhhCchhhhCcchHHHHH-HHHHhhcccCEeeeccHHHHHHHHHHHHH
Confidence 664311 111 00 0111234578874323222221 1122222 33334567889999999999999999886
Q ss_pred hhc--CCceEEeCCCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhcCCCC
Q 011339 230 KTK--GGKVWCLGPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKP 307 (488)
Q Consensus 230 ~~~--~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~ 307 (488)
+.. .+++++|||+++..... . ... ....+.+|.+||+.++++++|||||||+...+.+++.+++.+++.++++
T Consensus 237 ~~~~~~p~v~~vGpl~~~~~~~-~---~~~-~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~ 311 (475)
T PLN02167 237 RLPENYPPVYPVGPILSLKDRT-S---PNL-DSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCR 311 (475)
T ss_pred hhcccCCeeEEecccccccccc-C---CCC-CcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCc
Confidence 541 16899999997642110 0 000 0112468999999998889999999999989999999999999999999
Q ss_pred eEEEEeCCCC-CchhhhhhhhhHHHHHHhcCCCeEEecccchhhhhccCCcccccccCCchhHHHHhhcCCCEeecCccc
Q 011339 308 FIWVIRGGNN-TSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYG 386 (488)
Q Consensus 308 ~v~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~ 386 (488)
|||+++.... ....... +|++|.++... ++++.+|+||.+||+|+++++|||||||||++|++++|||||++|+++
T Consensus 312 flw~~~~~~~~~~~~~~~--lp~~~~er~~~-rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~ 388 (475)
T PLN02167 312 FLWSIRTNPAEYASPYEP--LPEGFMDRVMG-RGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYA 388 (475)
T ss_pred EEEEEecCcccccchhhh--CChHHHHHhcc-CeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccc
Confidence 9999875320 0111122 78888766644 446779999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCCch
Q 011339 387 DQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETRSS 466 (488)
Q Consensus 387 DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~ 466 (488)
||+.||+++++.+|+|+.+.... ..+++..+++++|.++|+++|.++ +.||+||+++++.+++++++|||+
T Consensus 389 DQ~~na~~~~~~~g~g~~~~~~~------~~~~~~~~~~~~l~~av~~~m~~~---~~~r~~a~~~~~~~~~av~~gGsS 459 (475)
T PLN02167 389 EQQLNAFTMVKELGLAVELRLDY------VSAYGEIVKADEIAGAVRSLMDGE---DVPRKKVKEIAEAARKAVMDGGSS 459 (475)
T ss_pred cchhhHHHHHHHhCeeEEeeccc------ccccCCcccHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHhCCCcH
Confidence 99999986326999999986420 000012479999999999999754 389999999999999999999999
Q ss_pred HHHHHHHHHHHHcCC
Q 011339 467 SLMIKLLIQDIMQQP 481 (488)
Q Consensus 467 ~~~~~~~i~~~~~~~ 481 (488)
..++++||++|...+
T Consensus 460 ~~~l~~~v~~i~~~~ 474 (475)
T PLN02167 460 FVAVKRFIDDLLGDH 474 (475)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998754
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1.2e-47 Score=393.36 Aligned_cols=404 Identities=17% Similarity=0.216 Sum_probs=278.2
Q ss_pred CCCCEEEEE-cCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccc--cCCCCC
Q 011339 7 CQQPHFVLF-PFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQE--AGVPEG 83 (488)
Q Consensus 7 ~~~~kvl~~-~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~l~~~ 83 (488)
+...||+.+ |.++.+|+.-+..|+++|++|||+||++++..... .... ...+++.+.++..... +.+..
T Consensus 18 ~~~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~~------~~~~~~~i~~~~~~~~~~~~~~~- 89 (507)
T PHA03392 18 VRAARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YASH------LCGNITEIDASLSVEYFKKLVKS- 89 (507)
T ss_pred cCcccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-cccC------CCCCEEEEEcCCChHHHHHHHhh-
Confidence 356788766 77899999999999999999999999997753110 0000 0125555544321110 00000
Q ss_pred Cccc---cCC-Cchhh----HHHHHHHHH--HhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhc-CCCcEEEecchH
Q 011339 84 CENF---DML-HSTDL----VSNFFKSLR--LLQLPLENLLKELTPKPSCIVSDTCYPWTVDTAARF-NIPRISFHGFSC 152 (488)
Q Consensus 84 ~~~~---~~~-~~~~~----~~~~~~~~~--~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~l-giP~v~~~~~~~ 152 (488)
.... ... ..... ...+...++ ...+.+.++++....++|+||+|.+..|+..+|+.+ ++|.|.++++..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~ 169 (507)
T PHA03392 90 SAVFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYG 169 (507)
T ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCC
Confidence 0000 000 00000 111111122 224556777761126899999999888999999999 999888766554
Q ss_pred HHHHHHhhhcccccccccC-CCCCccccCCCCC----ccc-ccccc----------------chHHHHHHHH--------
Q 011339 153 FCLLCLYNLHTSTVQENVT-SNSDYLVVPGLPD----QIE-MTKVR----------------EKWKDFGEMV-------- 202 (488)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~l~~----~~~-~~~~~----------------~~~~~~~~~~-------- 202 (488)
..... . ..+ .+..+.++|.+.. .+. +.|+. +..+++.++.
T Consensus 170 ~~~~~-~---------~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~ 239 (507)
T PHA03392 170 LAENF-E---------TMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTI 239 (507)
T ss_pred chhHH-H---------hhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCH
Confidence 33211 1 111 2344556664432 221 11111 1122222222
Q ss_pred HhhccccceEEEcCchhhhHHHHHHHHhhcCCceEEeCCCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEe
Q 011339 203 LAADMKSYGIIINTFEELELEYVKECKKTKGGKVWCLGPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVC 282 (488)
Q Consensus 203 ~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs 282 (488)
.....+...+++|+.+.++. ++++++++.+|||++.+... .+++++++.+|++.. ++++||||
T Consensus 240 ~~l~~~~~l~lvns~~~~d~------~rp~~p~v~~vGgi~~~~~~----------~~~l~~~l~~fl~~~-~~g~V~vS 302 (507)
T PHA03392 240 RELRNRVQLLFVNVHPVFDN------NRPVPPSVQYLGGLHLHKKP----------PQPLDDYLEEFLNNS-TNGVVYVS 302 (507)
T ss_pred HHHHhCCcEEEEecCccccC------CCCCCCCeeeecccccCCCC----------CCCCCHHHHHHHhcC-CCcEEEEE
Confidence 12223456788999888773 36888999999999764211 122678999999986 45799999
Q ss_pred eCCccC---CChHHHHHHHHHHhcCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEEecccchhhhhccCCccc
Q 011339 283 LGSICN---LTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGG 359 (488)
Q Consensus 283 ~Gs~~~---~~~~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~ 359 (488)
|||... .+.+.++.+++++++.+.+|||+++... .+.+ .++|+++.+|+||.+||+|+++++
T Consensus 303 ~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~----------~~~~-----~p~Nv~i~~w~Pq~~lL~hp~v~~ 367 (507)
T PHA03392 303 FGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEV----------EAIN-----LPANVLTQKWFPQRAVLKHKNVKA 367 (507)
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCc----------Cccc-----CCCceEEecCCCHHHHhcCCCCCE
Confidence 999874 4678899999999999999999998654 1101 146999999999999999998889
Q ss_pred ccccCCchhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccC
Q 011339 360 FLTHCSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEG 439 (488)
Q Consensus 360 ~IthgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~ 439 (488)
||||||+||++||+++|||+|++|+++||+.||+|+ +++|+|+.+++. .+++++|.+||+++|+|+
T Consensus 368 fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv-~~~G~G~~l~~~-------------~~t~~~l~~ai~~vl~~~ 433 (507)
T PHA03392 368 FVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKY-VELGIGRALDTV-------------TVSAAQLVLAIVDVIENP 433 (507)
T ss_pred EEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHH-HHcCcEEEeccC-------------CcCHHHHHHHHHHHhCCH
Confidence 999999999999999999999999999999999999 599999999987 599999999999999998
Q ss_pred cchHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCC
Q 011339 440 GETDDRRKRAREFQIMAKRATEETRSSSLMIKLLIQDIMQQP 481 (488)
Q Consensus 440 ~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~~~ 481 (488)
+|++||+++++.+++. .-+....+..-||.+.++.
T Consensus 434 ----~y~~~a~~ls~~~~~~---p~~~~~~av~~iE~v~r~~ 468 (507)
T PHA03392 434 ----KYRKNLKELRHLIRHQ---PMTPLHKAIWYTEHVIRNK 468 (507)
T ss_pred ----HHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCC
Confidence 9999999999998864 3333344456677776544
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.6e-48 Score=406.16 Aligned_cols=395 Identities=23% Similarity=0.314 Sum_probs=224.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCccc---
Q 011339 11 HFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENF--- 87 (488)
Q Consensus 11 kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~--- 87 (488)
||+++|. ++||++++..|+++|++|||+||++++.... .+... ....+++..++.+.......+.....
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPS------KPSNIRFETYPDPYPEEEFEEIFPEFISK 73 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T------------S-CCEEEE-----TT------TTHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-ccccc------cccceeeEEEcCCcchHHHhhhhHHHHHH
Confidence 7888885 8899999999999999999999999875321 11111 11245666665433221121111100
Q ss_pred --cCCCchhhHHHHHHHHH--------Hh-----hHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEEecchH
Q 011339 88 --DMLHSTDLVSNFFKSLR--------LL-----QLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISFHGFSC 152 (488)
Q Consensus 88 --~~~~~~~~~~~~~~~~~--------~~-----~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~~~ 152 (488)
................. .+ ...+.+.+++ .++|++|+|.+.+|+..+|+.+++|.+.+.+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~--~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~ 151 (500)
T PF00201_consen 74 FFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS--EKFDLVISDAFDPCGLALAHYLGIPVIIISSSTP 151 (500)
T ss_dssp HHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH--HHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCS
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--hccccceEeeccchhHHHHHHhcCCeEEEecccc
Confidence 00000011111111110 11 1223344555 5899999999988999999999999976433211
Q ss_pred HHHHHHhhhccccccccc-CCCCCccccCCC----CCcccc-ccccchHHHHHHHH-Hhhc-------------------
Q 011339 153 FCLLCLYNLHTSTVQENV-TSNSDYLVVPGL----PDQIEM-TKVREKWKDFGEMV-LAAD------------------- 206 (488)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~l----~~~~~~-~~~~~~~~~~~~~~-~~~~------------------- 206 (488)
.. ...... +....+.+.|.+ +..+.+ .|..+.+..+.... ....
T Consensus 152 ~~----------~~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (500)
T PF00201_consen 152 MY----------DLSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFR 221 (500)
T ss_dssp CS----------CCTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCH
T ss_pred cc----------hhhhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccccccH
Confidence 11 111111 222344455543 222221 22222221111111 1111
Q ss_pred ---cccceEEEcCchhhhHHHHHHHHhhcCCceEEeCCCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEee
Q 011339 207 ---MKSYGIIINTFEELELEYVKECKKTKGGKVWCLGPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCL 283 (488)
Q Consensus 207 ---~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~ 283 (488)
.+...+++|+...++ + +++++|++.+||+++.+.+.+ ++.+++.|++...++++|||||
T Consensus 222 ~~~~~~~l~l~ns~~~ld-----~-prp~~p~v~~vGgl~~~~~~~------------l~~~~~~~~~~~~~~~vv~vsf 283 (500)
T PF00201_consen 222 ELLSNASLVLINSHPSLD-----F-PRPLLPNVVEVGGLHIKPAKP------------LPEELWNFLDSSGKKGVVYVSF 283 (500)
T ss_dssp HHHHHHHHCCSSTEEE----------HHHHCTSTTGCGC-S----T------------CHHHHHHHTSTTTTTEEEEEE-
T ss_pred HHHHHHHHHhhhccccCc-----C-CcchhhcccccCccccccccc------------cccccchhhhccCCCCEEEEec
Confidence 111223344444443 2 245568999999997765433 7789999999855778999999
Q ss_pred CCccCCCh-HHHHHHHHHHhcCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEEecccchhhhhccCCcccccc
Q 011339 284 GSICNLTS-SQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLT 362 (488)
Q Consensus 284 Gs~~~~~~-~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~It 362 (488)
||....-+ +..+++++++++.+.+|||++.+.. ++.+ +.|+++.+|+||.+||.|+++++|||
T Consensus 284 Gs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~-----------~~~l-----~~n~~~~~W~PQ~~lL~hp~v~~fit 347 (500)
T PF00201_consen 284 GSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEP-----------PENL-----PKNVLIVKWLPQNDLLAHPRVKLFIT 347 (500)
T ss_dssp TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSH-----------GCHH-----HTTEEEESS--HHHHHTSTTEEEEEE
T ss_pred CcccchhHHHHHHHHHHHHhhCCCcccccccccc-----------cccc-----cceEEEeccccchhhhhcccceeeee
Confidence 99987444 4578999999999999999998742 2222 35999999999999999999999999
Q ss_pred cCCchhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcch
Q 011339 363 HCSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGET 442 (488)
Q Consensus 363 hgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~ 442 (488)
|||+||++||+++|||+|++|+++||+.||+|+ ++.|+|+.++.. .+++++|.++|+++|+|+
T Consensus 348 HgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~-~~~G~g~~l~~~-------------~~~~~~l~~ai~~vl~~~--- 410 (500)
T PF00201_consen 348 HGGLNSTQEALYHGVPMLGIPLFGDQPRNAARV-EEKGVGVVLDKN-------------DLTEEELRAAIREVLENP--- 410 (500)
T ss_dssp S--HHHHHHHHHCT--EEE-GCSTTHHHHHHHH-HHTTSEEEEGGG-------------C-SHHHHHHHHHHHHHSH---
T ss_pred ccccchhhhhhhccCCccCCCCcccCCccceEE-EEEeeEEEEEec-------------CCcHHHHHHHHHHHHhhh---
Confidence 999999999999999999999999999999999 599999999987 699999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcC
Q 011339 443 DDRRKRAREFQIMAKRATEETRSSSLMIKLLIQDIMQQ 480 (488)
Q Consensus 443 ~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~~ 480 (488)
+|++||++++++++...... .+.+..-||.+.++
T Consensus 411 -~y~~~a~~ls~~~~~~p~~p---~~~~~~~ie~v~~~ 444 (500)
T PF00201_consen 411 -SYKENAKRLSSLFRDRPISP---LERAVWWIEYVARH 444 (500)
T ss_dssp -HHHHHHHHHHHTTT-----------------------
T ss_pred -HHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhc
Confidence 99999999999988552222 23334445555543
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=6.2e-43 Score=353.02 Aligned_cols=376 Identities=19% Similarity=0.196 Sum_probs=254.1
Q ss_pred EcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCccccCCCchh
Q 011339 15 FPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFDMLHSTD 94 (488)
Q Consensus 15 ~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~ 94 (488)
+.+|++||++|++.||++|++|||+|+|++++.+.+.+++. |+.++.++.........+. ........
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~---~~~~~~~~ 68 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA---------GAEFVLYGSALPPPDNPPE---NTEEEPID 68 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc---------CCEEEecCCcCcccccccc---ccCcchHH
Confidence 36799999999999999999999999999999777666554 7888877643211111111 00011122
Q ss_pred hHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEEecchHHHHHHHhhhcccccccccCCCC
Q 011339 95 LVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSTVQENVTSNS 174 (488)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (488)
....+..........+.++++. .+||+||+|.+++++..+|+.+|||+|.+++.+.... .++.. .
T Consensus 69 ~~~~~~~~~~~~~~~l~~~~~~--~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~----~~~~~---------~ 133 (392)
T TIGR01426 69 IIEKLLDEAEDVLPQLEEAYKG--DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE----EFEEM---------V 133 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc----ccccc---------c
Confidence 3333333334445556666666 7999999999888999999999999998754321110 00000 0
Q ss_pred CccccCCCCCccc-----cccccchHHHHHHHHHh-------h-ccccceEEEcCchhhhHHHHHHHHhhcCCceEEeCC
Q 011339 175 DYLVVPGLPDQIE-----MTKVREKWKDFGEMVLA-------A-DMKSYGIIINTFEELELEYVKECKKTKGGKVWCLGP 241 (488)
Q Consensus 175 ~~~~~p~l~~~~~-----~~~~~~~~~~~~~~~~~-------~-~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~~vGp 241 (488)
+...+.+..... +......+...+.++.- . .......+..+ ++++.+.+..++++++++||
T Consensus 134 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~-----~~~l~~~~~~~~~~~~~~Gp 207 (392)
T TIGR01426 134 -SPAGEGSAEEGAIAERGLAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYT-----PKAFQPAGETFDDSFTFVGP 207 (392)
T ss_pred -cccchhhhhhhccccchhHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeC-----ChHhCCCccccCCCeEEECC
Confidence 000000000000 00000112222221110 0 00001112222 34444445667889999999
Q ss_pred CCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhcCCCCeEEEEeCCCCCchh
Q 011339 242 VSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKE 321 (488)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~ 321 (488)
+..... +...|....+++++||||+||+.....+.+..+++++.+.+.++||..+... ....
T Consensus 208 ~~~~~~-----------------~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~-~~~~ 269 (392)
T TIGR01426 208 CIGDRK-----------------EDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGV-DPAD 269 (392)
T ss_pred CCCCcc-----------------ccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCC-ChhH
Confidence 754311 1223666666788999999998776677888999999999999999887654 2111
Q ss_pred hhhhhhhHHHHHHhcCCCeEEecccchhhhhccCCcccccccCCchhHHHHhhcCCCEeecCcccccchhHHHHHHHhcc
Q 011339 322 IQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNI 401 (488)
Q Consensus 322 ~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~ 401 (488)
+.+ .+.|+.+.+|+||.++|+++++ +|||||+||++||+++|+|+|++|...||+.||+++ +++|+
T Consensus 270 ~~~-----------~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l-~~~g~ 335 (392)
T TIGR01426 270 LGE-----------LPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRI-AELGL 335 (392)
T ss_pred hcc-----------CCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHH-HHCCC
Confidence 111 1468999999999999999998 999999999999999999999999999999999999 59999
Q ss_pred eEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 011339 402 GVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETRSSSLMIKLLIQDI 477 (488)
Q Consensus 402 G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~ 477 (488)
|..+... .+++++|.++|.++|+|+ +|+++++++++.+++. +| . ..+.++|+.+
T Consensus 336 g~~l~~~-------------~~~~~~l~~ai~~~l~~~----~~~~~~~~l~~~~~~~---~~-~-~~aa~~i~~~ 389 (392)
T TIGR01426 336 GRHLPPE-------------EVTAEKLREAVLAVLSDP----RYAERLRKMRAEIREA---GG-A-RRAADEIEGF 389 (392)
T ss_pred EEEeccc-------------cCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHc---CC-H-HHHHHHHHHh
Confidence 9999875 589999999999999998 9999999999998854 44 3 3344555443
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=2e-42 Score=350.73 Aligned_cols=367 Identities=13% Similarity=0.076 Sum_probs=240.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCcc---
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCEN--- 86 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~--- 86 (488)
|||+|+++|+.||++|+++||++|++|||+|+|++++.+...++.. |++|+.++..............
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA---------GLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc---------CCceeeCCCCHHHHHhhhhhccccc
Confidence 7999999999999999999999999999999999999655544432 7888877532211000000000
Q ss_pred ccCC-CchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEEecchHHHHHHHhhhcccc
Q 011339 87 FDML-HSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTST 165 (488)
Q Consensus 87 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 165 (488)
.... ........+......+...+.+.+++ ++||+||+|.+.+++..+|+.+|||++.+++.+......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~-------- 141 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARD--WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSA-------- 141 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCcccc--------
Confidence 0000 00111222333334445555666666 899999999988899999999999999987765432110
Q ss_pred cccccCCCCCccccCCCCCcccccccc-----chHHHHHHHHHhhccc---------cceEEEcCchhhhHHHHHHHHhh
Q 011339 166 VQENVTSNSDYLVVPGLPDQIEMTKVR-----EKWKDFGEMVLAADMK---------SYGIIINTFEELELEYVKECKKT 231 (488)
Q Consensus 166 ~~~~~~~~~~~~~~p~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~---------~~~~l~~s~~~le~~~~~~~~~~ 231 (488)
..+.. +......+.... ...........+...- ....+... .+.+...+..
T Consensus 142 --------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 206 (401)
T cd03784 142 --------FPPPL--GRANLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGF-----SPAVLPPPPD 206 (401)
T ss_pred --------CCCcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEec-----CcccCCCCCC
Confidence 00000 000000000000 0011111111111100 00111111 1122223345
Q ss_pred cCCceEEeC-CCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCC-hHHHHHHHHHHhcCCCCeE
Q 011339 232 KGGKVWCLG-PVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLT-SSQMIELGLGLEASKKPFI 309 (488)
Q Consensus 232 ~~~~~~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~-~~~~~~~~~a~~~~~~~~v 309 (488)
++++..++| ++... +.. +..+.++..|++. ++++||||+||+.... ...+..++++++..+.++|
T Consensus 207 ~~~~~~~~g~~~~~~-~~~----------~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i 273 (401)
T cd03784 207 WPRFDLVTGYGFRDV-PYN----------GPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAI 273 (401)
T ss_pred ccccCcEeCCCCCCC-CCC----------CCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEE
Confidence 666666775 33221 111 1145677888876 4679999999998744 4567788999998899999
Q ss_pred EEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEEecccchhhhhccCCcccccccCCchhHHHHhhcCCCEeecCcccccc
Q 011339 310 WVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQF 389 (488)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~DQ~ 389 (488)
|+.+... . .. ...++|+++.+|+||.++|+++++ ||||||+||++|++++|||+|++|...||+
T Consensus 274 ~~~g~~~-~---------~~----~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~ 337 (401)
T cd03784 274 LSLGWGG-L---------GA----EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQP 337 (401)
T ss_pred EEccCcc-c---------cc----cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcH
Confidence 9988764 1 10 011469999999999999999999 999999999999999999999999999999
Q ss_pred hhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHH
Q 011339 390 WNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKR 458 (488)
Q Consensus 390 ~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~ 458 (488)
.||+++ +++|+|+.++.. .+++++|.++|++++++ .++++++++++.+++
T Consensus 338 ~~a~~~-~~~G~g~~l~~~-------------~~~~~~l~~al~~~l~~-----~~~~~~~~~~~~~~~ 387 (401)
T cd03784 338 FWAARV-AELGAGPALDPR-------------ELTAERLAAALRRLLDP-----PSRRRAAALLRRIRE 387 (401)
T ss_pred HHHHHH-HHCCCCCCCCcc-------------cCCHHHHHHHHHHHhCH-----HHHHHHHHHHHHHHh
Confidence 999999 599999999876 48999999999999985 556667777666643
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-41 Score=335.51 Aligned_cols=390 Identities=17% Similarity=0.214 Sum_probs=248.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCcccc
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFD 88 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~ 88 (488)
+|||+|+..|++||++|+++|+++|.++||+|+|+|++.+.+.+.+. |+.|..++..........+. .
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a---------g~~f~~~~~~~~~~~~~~~~--~- 68 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA---------GLAFVAYPIRDSELATEDGK--F- 68 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh---------CcceeeccccCChhhhhhhh--h-
Confidence 68999999999999999999999999999999999999655555443 66666665221100000000 0
Q ss_pred CCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEEecchHHHHHHHhhhccccccc
Q 011339 89 MLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSTVQE 168 (488)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 168 (488)
.....+.. ...........+.+++.+ ..||+++.|...+.+ .+++..++|++.............. ....
T Consensus 69 -~~~~~~~~-~~~~~~~~~~~~~~~~~e--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 138 (406)
T COG1819 69 -AGVKSFRR-LLQQFKKLIRELLELLRE--LEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAG-----LPLP 138 (406)
T ss_pred -hccchhHH-HhhhhhhhhHHHHHHHHh--cchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccc-----cCcc
Confidence 00001111 222223344556667777 799999999766544 8899999998875433222211100 0000
Q ss_pred ccCCCCCccccCC--CCCccccccccchHHHHHHHHHhhccccceEEEc-------CchhhhHHHHHHHH---hhcCCce
Q 011339 169 NVTSNSDYLVVPG--LPDQIEMTKVREKWKDFGEMVLAADMKSYGIIIN-------TFEELELEYVKECK---KTKGGKV 236 (488)
Q Consensus 169 ~~~~~~~~~~~p~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------s~~~le~~~~~~~~---~~~~~~~ 236 (488)
..... .....+. ++... ..+....... +...............+ .-..++..+.+... ..++...
T Consensus 139 ~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 215 (406)
T COG1819 139 PVGIA-GKLPIPLYPLPPRL-VRPLIFARSW-LPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPFIG 215 (406)
T ss_pred ccccc-ccccccccccChhh-ccccccchhh-hhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCCCCCCc
Confidence 00000 0000000 00000 0000000000 00000000000000111 10111111111100 1223344
Q ss_pred EEeCCCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhcCCCCeEEEEeCCC
Q 011339 237 WCLGPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGN 316 (488)
Q Consensus 237 ~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~v~~~~~~~ 316 (488)
.++||+... ...+...|.. .++++||+|+||.... .++++.+++++...+.++|..++. .
T Consensus 216 ~~~~~~~~~----------------~~~~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~-~ 275 (406)
T COG1819 216 PYIGPLLGE----------------AANELPYWIP--ADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG-A 275 (406)
T ss_pred Ccccccccc----------------ccccCcchhc--CCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc-c
Confidence 555555322 2344444533 3577999999999987 888999999999999999999877 3
Q ss_pred CCchhhhhhhhhHHHHHHhcCCCeEEecccchhhhhccCCcccccccCCchhHHHHhhcCCCEeecCcccccchhHHHHH
Q 011339 317 NTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQFWNEKLIV 396 (488)
Q Consensus 317 ~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~ 396 (488)
.. .... + +.|+++.+|+||.++++++++ ||||||+||++|||++|||+|++|...||+.||.|+
T Consensus 276 -~~-~~~~--~---------p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rv- 339 (406)
T COG1819 276 -RD-TLVN--V---------PDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERV- 339 (406)
T ss_pred -cc-cccc--C---------CCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHH-
Confidence 11 1111 3 469999999999999999999 999999999999999999999999999999999999
Q ss_pred HHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 011339 397 QVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETRSSSLMIKLLIQD 476 (488)
Q Consensus 397 e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~ 476 (488)
|++|+|..+..+ .++++.|+++|+++|+|+ .|+++++++++.+++. +| ...+.++|++
T Consensus 340 e~~G~G~~l~~~-------------~l~~~~l~~av~~vL~~~----~~~~~~~~~~~~~~~~---~g--~~~~a~~le~ 397 (406)
T COG1819 340 EELGAGIALPFE-------------ELTEERLRAAVNEVLADD----SYRRAAERLAEEFKEE---DG--PAKAADLLEE 397 (406)
T ss_pred HHcCCceecCcc-------------cCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHhhhc---cc--HHHHHHHHHH
Confidence 699999999987 599999999999999998 9999999999999977 66 4567788888
Q ss_pred HHcCC
Q 011339 477 IMQQP 481 (488)
Q Consensus 477 ~~~~~ 481 (488)
..++.
T Consensus 398 ~~~~~ 402 (406)
T COG1819 398 FAREK 402 (406)
T ss_pred HHhcc
Confidence 66554
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=3.3e-39 Score=336.19 Aligned_cols=393 Identities=28% Similarity=0.429 Sum_probs=245.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEE---EEeeCCccccCCCCCCc
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQL---IEIQFPYQEAGVPEGCE 85 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~l~~~~~ 85 (488)
..+++++++|++||++|++.||++|+++||+||++++..+........ ....+.. ...++....++++....
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSS-----KSKSIKKINPPPFEFLTIPDGLPEGWE 79 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcc-----cceeeeeeecChHHhhhhhhhhccchH
Confidence 567889999999999999999999999999999999875444321100 0001111 11111100112222211
Q ss_pred cccCCCchhhHHHHHHHHHHh-hHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcC-CCcEEEecchHHHHHHHhhhcc
Q 011339 86 NFDMLHSTDLVSNFFKSLRLL-QLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFN-IPRISFHGFSCFCLLCLYNLHT 163 (488)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lg-iP~v~~~~~~~~~~~~~~~~~~ 163 (488)
... .........+....... .+...........++|++|+|.+..+...++.... ++..++.+.++....+..+.+.
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~ 158 (496)
T KOG1192|consen 80 DDD-LDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPL 158 (496)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcc
Confidence 100 00000011222222222 22222222221134999999998666776776664 8888887777666544222211
Q ss_pred cccccccCCCCCccccCCCCC-----cccccccc--------chH----------HHHHHHHHhhc----cccceEEEcC
Q 011339 164 STVQENVTSNSDYLVVPGLPD-----QIEMTKVR--------EKW----------KDFGEMVLAAD----MKSYGIIINT 216 (488)
Q Consensus 164 ~~~~~~~~~~~~~~~~p~l~~-----~~~~~~~~--------~~~----------~~~~~~~~~~~----~~~~~~l~~s 216 (488)
.++|.... .+.+.... +.+ ........... ....+++.++
T Consensus 159 -------------~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 225 (496)
T KOG1192|consen 159 -------------SYVPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNA 225 (496)
T ss_pred -------------cccCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcC
Confidence 12221111 01110000 000 01111111000 1112334444
Q ss_pred -chhhhHHHHHHH-HhhcCCceEEeCCCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCC--eEEEEeeCCcc---CC
Q 011339 217 -FEELELEYVKEC-KKTKGGKVWCLGPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPN--SVVYVCLGSIC---NL 289 (488)
Q Consensus 217 -~~~le~~~~~~~-~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~vV~vs~Gs~~---~~ 289 (488)
+..++...+... +.+..+++++|||++...... ....+.+|++..+.. ++|||||||++ ..
T Consensus 226 ~~~~ln~~~~~~~~~~~~~~~v~~IG~l~~~~~~~------------~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~l 293 (496)
T KOG1192|consen 226 SFIFLNSNPLLDFEPRPLLPKVIPIGPLHVKDSKQ------------KSPLPLEWLDILDESRHSVVYISFGSMVNSADL 293 (496)
T ss_pred eEEEEccCcccCCCCCCCCCCceEECcEEecCccc------------cccccHHHHHHHhhccCCeEEEECCcccccccC
Confidence 444544333334 344568999999998763211 111456666665444 79999999999 68
Q ss_pred ChHHHHHHHHHHhcC-CCCeEEEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEEecccchhhh-hccCCcccccccCCch
Q 011339 290 TSSQMIELGLGLEAS-KKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLI-LSHPSIGGFLTHCSWN 367 (488)
Q Consensus 290 ~~~~~~~~~~a~~~~-~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~l-l~~~~~~~~IthgG~g 367 (488)
+.+...+++.+++.+ +..|+|++.... .. . +++++.++ .++||+..+|+||.++ |+|+++++||||||+|
T Consensus 294 p~~~~~~l~~~l~~~~~~~FiW~~~~~~-~~-~-----~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~n 365 (496)
T KOG1192|consen 294 PEEQKKELAKALESLQGVTFLWKYRPDD-SI-Y-----FPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWN 365 (496)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEecCCc-ch-h-----hhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEECCccc
Confidence 999999999999999 778899998754 11 0 12222111 2468888899999998 5999999999999999
Q ss_pred hHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHH
Q 011339 368 SSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRK 447 (488)
Q Consensus 368 s~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~ 447 (488)
|++|++++|||+|++|+++||+.||++++ +.|.|..++.. ..+...+.+++.++++++ +|++
T Consensus 366 St~E~~~~GvP~v~~Plf~DQ~~Na~~i~-~~g~~~v~~~~-------------~~~~~~~~~~~~~il~~~----~y~~ 427 (496)
T KOG1192|consen 366 STLESIYSGVPMVCVPLFGDQPLNARLLV-RHGGGGVLDKR-------------DLVSEELLEAIKEILENE----EYKE 427 (496)
T ss_pred HHHHHHhcCCceecCCccccchhHHHHHH-hCCCEEEEehh-------------hcCcHHHHHHHHHHHcCh----HHHH
Confidence 99999999999999999999999999995 88888888776 366666999999999998 9999
Q ss_pred HHHHHHHHHHH
Q 011339 448 RAREFQIMAKR 458 (488)
Q Consensus 448 ~a~~l~~~~~~ 458 (488)
+++++++..++
T Consensus 428 ~~~~l~~~~~~ 438 (496)
T KOG1192|consen 428 AAKRLSEILRD 438 (496)
T ss_pred HHHHHHHHHHc
Confidence 99999999773
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.96 E-value=1.3e-27 Score=235.95 Aligned_cols=324 Identities=17% Similarity=0.162 Sum_probs=207.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCcccc
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFD 88 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~ 88 (488)
|.||++.+.++.||++|.++||++|.++||+|.|+++....+. +. .+..++.++.++.. ++...
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~--~l-----~~~~g~~~~~~~~~----~l~~~----- 64 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEK--TI-----IEKENIPYYSISSG----KLRRY----- 64 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccc--cc-----CcccCCcEEEEecc----CcCCC-----
Confidence 4579999999999999999999999999999999987633221 11 12236777776521 12110
Q ss_pred CCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCc--chHHHHHhcCCCcEEEecchHHHHHHHhhhccccc
Q 011339 89 MLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYP--WTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSTV 166 (488)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~--~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 166 (488)
.....+...+..... .-....++++ .+||+|++...+. .+..+|+.+++|++..
T Consensus 65 --~~~~~~~~~~~~~~~-~~~~~~i~~~--~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~------------------- 120 (352)
T PRK12446 65 --FDLKNIKDPFLVMKG-VMDAYVRIRK--LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH------------------- 120 (352)
T ss_pred --chHHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEecCchhhHHHHHHHHHcCCCEEEE-------------------
Confidence 011122222222222 2233456777 8999999987443 4788999999999873
Q ss_pred ccccCCCCCccccCCCCCccccccccchHHHHHHHHHhhccccceEEEcCchhhhHHHHHHHHhhcC-CceEEeCCCCCC
Q 011339 167 QENVTSNSDYLVVPGLPDQIEMTKVREKWKDFGEMVLAADMKSYGIIINTFEELELEYVKECKKTKG-GKVWCLGPVSLC 245 (488)
Q Consensus 167 ~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~-~~~~~vGpl~~~ 245 (488)
+.+..|++.. ++..++. ..+.-+|++.. ..++ .++.++|+.+.+
T Consensus 121 --------e~n~~~g~~n------------r~~~~~a-------~~v~~~f~~~~--------~~~~~~k~~~tG~Pvr~ 165 (352)
T PRK12446 121 --------ESDMTPGLAN------------KIALRFA-------SKIFVTFEEAA--------KHLPKEKVIYTGSPVRE 165 (352)
T ss_pred --------CCCCCccHHH------------HHHHHhh-------CEEEEEccchh--------hhCCCCCeEEECCcCCc
Confidence 3444555433 1222211 12233343211 2232 578899965433
Q ss_pred CCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCCh-HHHHHHHHHHhcCCCCeEEEEeCCCCCchhhhh
Q 011339 246 NKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTS-SQMIELGLGLEASKKPFIWVIRGGNNTSKEIQE 324 (488)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~-~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~~ 324 (488)
.-.. ...+...+.+.-.+++++|+|..||...... +.+..++..+.. +.+++|+++...
T Consensus 166 ~~~~-----------~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~-------- 225 (352)
T PRK12446 166 EVLK-----------GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGN-------- 225 (352)
T ss_pred cccc-----------ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCch--------
Confidence 1100 0111222222323467799999999998443 333344444432 478888887654
Q ss_pred hhhhHHHHHHhcCCCeEEeccc-c-hhhhhccCCcccccccCCchhHHHHhhcCCCEeecCcc-----cccchhHHHHHH
Q 011339 325 WLLEEKFEERVKGRGILILGWA-P-QVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLY-----GDQFWNEKLIVQ 397 (488)
Q Consensus 325 ~~~p~~~~~~~~~~nv~~~~~~-p-q~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~-----~DQ~~na~rv~e 397 (488)
+.+.... ..++.+.+|+ + -.++|+.+++ +|||||.+|+.|++++|+|+|++|+. .||..||+.+ +
T Consensus 226 --~~~~~~~---~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l-~ 297 (352)
T PRK12446 226 --LDDSLQN---KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESF-E 297 (352)
T ss_pred --HHHHHhh---cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHH-H
Confidence 2221111 1355666887 4 4569999999 99999999999999999999999985 4899999999 5
Q ss_pred HhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHH
Q 011339 398 VLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRARE 451 (488)
Q Consensus 398 ~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~ 451 (488)
+.|+|..+..+ .++++.|.+++.++++|++ .|++++++
T Consensus 298 ~~g~~~~l~~~-------------~~~~~~l~~~l~~ll~~~~---~~~~~~~~ 335 (352)
T PRK12446 298 RQGYASVLYEE-------------DVTVNSLIKHVEELSHNNE---KYKTALKK 335 (352)
T ss_pred HCCCEEEcchh-------------cCCHHHHHHHHHHHHcCHH---HHHHHHHH
Confidence 99999999765 5899999999999998752 45554444
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.94 E-value=1.2e-24 Score=213.61 Aligned_cols=306 Identities=18% Similarity=0.183 Sum_probs=192.5
Q ss_pred CEEEEEcCC-CccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCcccc
Q 011339 10 PHFVLFPFL-AQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFD 88 (488)
Q Consensus 10 ~kvl~~~~~-~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~ 88 (488)
|||+|...+ +.||+.++++||++| |||+|+|++.....+.+.+ .+....++. +...... .
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~----------~~~~~~~~~------~~~~~~~-~ 61 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP----------RFPVREIPG------LGPIQEN-G 61 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc----------ccCEEEccC------ceEeccC-C
Confidence 789888876 999999999999999 6999999998854433322 233444431 1100000 0
Q ss_pred CCCchhhHHHH---HHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEEecchHHHHHHHhhhcccc
Q 011339 89 MLHSTDLVSNF---FKSLRLLQLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTST 165 (488)
Q Consensus 89 ~~~~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 165 (488)
........... ..........+.+++++ .+||+||+|. .+.+..+|+..|+|++.+........
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~---------- 128 (318)
T PF13528_consen 62 RLDRWKTVRNNIRWLARLARRIRREIRWLRE--FRPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLH---------- 128 (318)
T ss_pred ccchHHHHHHHHHhhHHHHHHHHHHHHHHHh--cCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHccc----------
Confidence 01111111111 11223445566677777 8999999995 45577899999999998765543320
Q ss_pred cccccCCCCCccccCCCCCccccccccchHHHHHHHHHh-h-ccccceEEEcCchhhhHHHHHHHHhhcCCceEEeCCCC
Q 011339 166 VQENVTSNSDYLVVPGLPDQIEMTKVREKWKDFGEMVLA-A-DMKSYGIIINTFEELELEYVKECKKTKGGKVWCLGPVS 243 (488)
Q Consensus 166 ~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~~vGpl~ 243 (488)
....++ ... .+.....++.. . .......+.-++. .. .....++.++||+.
T Consensus 129 ---------~~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~--------~~~~~~~~~~~p~~ 180 (318)
T PF13528_consen 129 ---------PNFWLP-WDQ---------DFGRLIERYIDRYHFPPADRRLALSFY-PP--------LPPFFRVPFVGPII 180 (318)
T ss_pred ---------ccCCcc-hhh---------hHHHHHHHhhhhccCCcccceecCCcc-cc--------ccccccccccCchh
Confidence 000000 000 12222222222 1 2222323333322 10 11123466788875
Q ss_pred CCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhcCC-CCeEEEEeCCCCCchhh
Q 011339 244 LCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASK-KPFIWVIRGGNNTSKEI 322 (488)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~v~~~~~~~~~~~~~ 322 (488)
.+... +.-. .+++.|+|++|..... .++++++..+ +.+++. +... .
T Consensus 181 ~~~~~-------------------~~~~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~-~---- 227 (318)
T PF13528_consen 181 RPEIR-------------------ELPP--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNA-A---- 227 (318)
T ss_pred ccccc-------------------ccCC--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCc-c----
Confidence 43211 1111 1345799999988764 5567777666 455544 4332 0
Q ss_pred hhhhhhHHHHHHhcCCCeEEeccc--chhhhhccCCcccccccCCchhHHHHhhcCCCEeecCc--ccccchhHHHHHHH
Q 011339 323 QEWLLEEKFEERVKGRGILILGWA--PQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPL--YGDQFWNEKLIVQV 398 (488)
Q Consensus 323 ~~~~~p~~~~~~~~~~nv~~~~~~--pq~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~--~~DQ~~na~rv~e~ 398 (488)
-+ ..+|+.+.+|. ...++|+.+++ +|||||+||++|++++|+|+|++|. ..+|..||+++ ++
T Consensus 228 ----~~-------~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l-~~ 293 (318)
T PF13528_consen 228 ----DP-------RPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKL-EE 293 (318)
T ss_pred ----cc-------cCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHH-HH
Confidence 01 15799998886 45679999999 9999999999999999999999999 67999999999 69
Q ss_pred hcceEEecccCCCCCCcccccccccCHHHHHHHHHHH
Q 011339 399 LNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINIL 435 (488)
Q Consensus 399 ~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~ 435 (488)
+|+|..++.+ .++++.|.++|.++
T Consensus 294 ~G~~~~~~~~-------------~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 294 LGLGIVLSQE-------------DLTPERLAEFLERL 317 (318)
T ss_pred CCCeEEcccc-------------cCCHHHHHHHHhcC
Confidence 9999999876 69999999999864
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=7.7e-24 Score=206.66 Aligned_cols=326 Identities=20% Similarity=0.214 Sum_probs=208.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCC-eEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCcccc
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGA-AITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFD 88 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH-~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~ 88 (488)
++|++...++-||+.|.++|+++|.++|+ +|.++.+....+.. .....++.++.|+.. ++... .
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~-------l~~~~~~~~~~I~~~----~~~~~----~ 65 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAF-------LVKQYGIEFELIPSG----GLRRK----G 65 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceee-------eccccCceEEEEecc----ccccc----C
Confidence 57899999999999999999999999999 58887554322211 112236777777621 11111 0
Q ss_pred CCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCc--chHHHHHhcCCCcEEEecchHHHHHHHhhhccccc
Q 011339 89 MLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYP--WTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSTV 166 (488)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~--~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 166 (488)
....+...+.. -........++++ .+||+|++..-+. .+..+|..+|||+++
T Consensus 66 ---~~~~~~~~~~~-~~~~~~a~~il~~--~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~i-------------------- 119 (357)
T COG0707 66 ---SLKLLKAPFKL-LKGVLQARKILKK--LKPDVVIGTGGYVSGPVGIAAKLLGIPVII-------------------- 119 (357)
T ss_pred ---cHHHHHHHHHH-HHHHHHHHHHHHH--cCCCEEEecCCccccHHHHHHHhCCCCEEE--------------------
Confidence 11111111111 1223455677788 7999999977544 678899999999998
Q ss_pred ccccCCCCCccccCCCCCccccccccchHHHHHHHHHhhccccceEEEcCchhhhHHHHHHHHhhc-CCceEEeC-CCCC
Q 011339 167 QENVTSNSDYLVVPGLPDQIEMTKVREKWKDFGEMVLAADMKSYGIIINTFEELELEYVKECKKTK-GGKVWCLG-PVSL 244 (488)
Q Consensus 167 ~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~-~~~~~~vG-pl~~ 244 (488)
++.+..||+.+.+ ..+....+..+|+..+ ... +.++.++| |+..
T Consensus 120 -------hEqn~~~G~ank~-------------------~~~~a~~V~~~f~~~~--------~~~~~~~~~~tG~Pvr~ 165 (357)
T COG0707 120 -------HEQNAVPGLANKI-------------------LSKFAKKVASAFPKLE--------AGVKPENVVVTGIPVRP 165 (357)
T ss_pred -------EecCCCcchhHHH-------------------hHHhhceeeecccccc--------ccCCCCceEEecCcccH
Confidence 5677788776522 1111222334443211 111 13578888 5432
Q ss_pred CCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCCh-HHHHHHHHHHhcCCCCeEEEEeCCCCCchhhh
Q 011339 245 CNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTS-SQMIELGLGLEASKKPFIWVIRGGNNTSKEIQ 323 (488)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~-~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~ 323 (488)
.-.. .+..-..+... .++++|+|..||.....- +.+..++..+.. +..+++..+... +
T Consensus 166 ~~~~-------------~~~~~~~~~~~-~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~-----~- 224 (357)
T COG0707 166 EFEE-------------LPAAEVRKDGR-LDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND-----L- 224 (357)
T ss_pred Hhhc-------------cchhhhhhhcc-CCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcch-----H-
Confidence 2110 01111111111 267799999999998332 222233333333 456666666543 1
Q ss_pred hhhhhHHHHHHhcCCC-eEEecccch-hhhhccCCcccccccCCchhHHHHhhcCCCEeecCcc----cccchhHHHHHH
Q 011339 324 EWLLEEKFEERVKGRG-ILILGWAPQ-VLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLY----GDQFWNEKLIVQ 397 (488)
Q Consensus 324 ~~~~p~~~~~~~~~~n-v~~~~~~pq-~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~----~DQ~~na~rv~e 397 (488)
+.........+ +.+.+|.++ .++|+.+++ +||++|.+|+.|+++.|+|+|.+|.- .+|..||..+ +
T Consensus 225 -----~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l-~ 296 (357)
T COG0707 225 -----EELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFL-E 296 (357)
T ss_pred -----HHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHH-H
Confidence 12222222334 778889876 558999999 99999999999999999999999973 3899999999 5
Q ss_pred HhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Q 011339 398 VLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREF 452 (488)
Q Consensus 398 ~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l 452 (488)
+.|.|..++.. .+|++++.+.|.+++++++..+.|+++++++
T Consensus 297 ~~gaa~~i~~~-------------~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~ 338 (357)
T COG0707 297 KAGAALVIRQS-------------ELTPEKLAELILRLLSNPEKLKAMAENAKKL 338 (357)
T ss_pred hCCCEEEeccc-------------cCCHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999999887 5999999999999999865444555555544
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.90 E-value=6.9e-22 Score=193.82 Aligned_cols=304 Identities=15% Similarity=0.094 Sum_probs=172.4
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeE-EEEeeCCccccCCCCCCcccc
Q 011339 11 HFVLFPFL-AQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQ-LIEIQFPYQEAGVPEGCENFD 88 (488)
Q Consensus 11 kvl~~~~~-~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~l~~~~~~~~ 88 (488)
||++...+ ++||+.|.++||++|.+ ||+|+|+++......++.. ++. +..+|.... ....+.
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~---------~~~~~~~~p~~~~--~~~~~~---- 64 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKY---------GFKVFETFPGIKL--KGEDGK---- 64 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhh---------cCcceeccCCceE--eecCCc----
Confidence 57776665 66999999999999999 9999999887633333222 333 322220000 001110
Q ss_pred CCCchhhHHHHH---HHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEEecchHHHHHHHhhhcccc
Q 011339 89 MLHSTDLVSNFF---KSLRLLQLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTST 165 (488)
Q Consensus 89 ~~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 165 (488)
.+....+. ...........+++++ .+||+||+| +.+.+..+|+.+|||++.+..+....
T Consensus 65 ----~~~~~~l~~~~~~~~~~~~~~~~~l~~--~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~~----------- 126 (321)
T TIGR00661 65 ----VNIVKTLRNKEYSPKKAIRREINIIRE--YNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYTR----------- 126 (321)
T ss_pred ----CcHHHHHHhhccccHHHHHHHHHHHHh--cCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhhc-----------
Confidence 01111111 1101223345678888 899999999 66667889999999999765431110
Q ss_pred cccccCCCCCccccCCCCCccccccccchHHHHHHHHHhhc-cccceEEEcCchhhhHHHHHHHHhhcCCceE-EeCCCC
Q 011339 166 VQENVTSNSDYLVVPGLPDQIEMTKVREKWKDFGEMVLAAD-MKSYGIIINTFEELELEYVKECKKTKGGKVW-CLGPVS 243 (488)
Q Consensus 166 ~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~-~vGpl~ 243 (488)
.|+... ...+..++..... .....+....+....+ ..++... .-+|.
T Consensus 127 -------------~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~p~~~~~~~~~~- 175 (321)
T TIGR00661 127 -------------YPLKTD---------LIVYPTMAALRIFNERCERFIVPDYPFPYT--------ICPKIIKNMEGPL- 175 (321)
T ss_pred -------------CCcccc---------hhHHHHHHHHHHhccccceEeeecCCCCCC--------CCccccccCCCcc-
Confidence 011111 0111111111111 1222222222211110 0000000 00111
Q ss_pred CCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhcCCCCeEEEEeCCCCCchhhh
Q 011339 244 LCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQ 323 (488)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~ 323 (488)
.+.+..++... +++.|+|.+|+... ..++++++..+. +.+.+.... .
T Consensus 176 ------------------~~~~~~~~~~~--~~~~iLv~~g~~~~------~~l~~~l~~~~~-~~~i~~~~~-~----- 222 (321)
T TIGR00661 176 ------------------IRYDVDDVDNY--GEDYILVYIGFEYR------YKILELLGKIAN-VKFVCYSYE-V----- 222 (321)
T ss_pred ------------------cchhhhccccC--CCCcEEEECCcCCH------HHHHHHHHhCCC-eEEEEeCCC-C-----
Confidence 11122223222 34467787777442 345666766553 223322222 0
Q ss_pred hhhhhHHHHHHhcCCCeEEecccc--hhhhhccCCcccccccCCchhHHHHhhcCCCEeecCccc--ccchhHHHHHHHh
Q 011339 324 EWLLEEKFEERVKGRGILILGWAP--QVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYG--DQFWNEKLIVQVL 399 (488)
Q Consensus 324 ~~~~p~~~~~~~~~~nv~~~~~~p--q~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~--DQ~~na~rv~e~~ 399 (488)
..+.+ ..|+.+.+|.| ..+.|+.+++ +|||||.+|++|++++|+|+|.+|..+ ||..||+.+ ++.
T Consensus 223 ---~~~~~-----~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l-~~~ 291 (321)
T TIGR00661 223 ---AKNSY-----NENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKL-EDL 291 (321)
T ss_pred ---Ccccc-----CCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHH-HHC
Confidence 11111 35888889997 4567888888 999999999999999999999999865 899999999 599
Q ss_pred cceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccC
Q 011339 400 NIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEG 439 (488)
Q Consensus 400 G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~ 439 (488)
|+|+.++.. .+ ++.+++.++++|+
T Consensus 292 g~~~~l~~~-------------~~---~~~~~~~~~~~~~ 315 (321)
T TIGR00661 292 GCGIALEYK-------------EL---RLLEAILDIRNMK 315 (321)
T ss_pred CCEEEcChh-------------hH---HHHHHHHhccccc
Confidence 999999765 24 6677777788776
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.83 E-value=4.4e-18 Score=169.83 Aligned_cols=324 Identities=15% Similarity=0.071 Sum_probs=191.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCcccc
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFD 88 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~ 88 (488)
||||+|+..+..||...++.|+++|.++||+|++++.+.... ..... ..+++++.++.+ ++...
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~--~~~~~-----~~g~~~~~~~~~----~~~~~----- 64 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGME--ARLVP-----KAGIEFHFIPSG----GLRRK----- 64 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchh--hhccc-----cCCCcEEEEecc----CcCCC-----
Confidence 689999999999999999999999999999999998864211 11100 125666665421 11100
Q ss_pred CCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCC--CcchHHHHHhcCCCcEEEecchHHHHHHHhhhccccc
Q 011339 89 MLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTC--YPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSTV 166 (488)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~--~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 166 (488)
.....+..... .......+.+++++ .+||+|++... .+.+..+++..++|++.....
T Consensus 65 --~~~~~l~~~~~-~~~~~~~~~~~ik~--~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~---------------- 123 (357)
T PRK00726 65 --GSLANLKAPFK-LLKGVLQARKILKR--FKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQN---------------- 123 (357)
T ss_pred --ChHHHHHHHHH-HHHHHHHHHHHHHh--cCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCC----------------
Confidence 00011111111 12334556778888 79999999963 234556788889999853110
Q ss_pred ccccCCCCCccccCCCCCccccccccchHHHHHHHHHhhccccceEEEcCchhhhHHHHHHHHhhcCCceEEeCCCCCCC
Q 011339 167 QENVTSNSDYLVVPGLPDQIEMTKVREKWKDFGEMVLAADMKSYGIIINTFEELELEYVKECKKTKGGKVWCLGPVSLCN 246 (488)
Q Consensus 167 ~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~ 246 (488)
..+ . ....+. ....+.++..+-.. +. ..-+.++.++|+.....
T Consensus 124 -----------~~~---~---------~~~r~~------~~~~d~ii~~~~~~-----~~---~~~~~~i~vi~n~v~~~ 166 (357)
T PRK00726 124 -----------AVP---G---------LANKLL------ARFAKKVATAFPGA-----FP---EFFKPKAVVTGNPVREE 166 (357)
T ss_pred -----------CCc---c---------HHHHHH------HHHhchheECchhh-----hh---ccCCCCEEEECCCCChH
Confidence 000 0 001111 11223333322111 11 12236788898654321
Q ss_pred CCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhcCCC--CeEEEEeCCCCCchhhhh
Q 011339 247 KQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKK--PFIWVIRGGNNTSKEIQE 324 (488)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~--~~v~~~~~~~~~~~~~~~ 324 (488)
... .. ...+.+...++.++|++..|+.... .....+.++++.... .++|.++.+.
T Consensus 167 ~~~------------~~-~~~~~~~~~~~~~~i~~~gg~~~~~--~~~~~l~~a~~~~~~~~~~~~~~G~g~-------- 223 (357)
T PRK00726 167 ILA------------LA-APPARLAGREGKPTLLVVGGSQGAR--VLNEAVPEALALLPEALQVIHQTGKGD-------- 223 (357)
T ss_pred hhc------------cc-chhhhccCCCCCeEEEEECCcHhHH--HHHHHHHHHHHHhhhCcEEEEEcCCCc--------
Confidence 100 00 0011112223455777766654331 112222355544332 3455555544
Q ss_pred hhhhHHHHHHhc-CCCeEEecccc-hhhhhccCCcccccccCCchhHHHHhhcCCCEeecCc----ccccchhHHHHHHH
Q 011339 325 WLLEEKFEERVK-GRGILILGWAP-QVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPL----YGDQFWNEKLIVQV 398 (488)
Q Consensus 325 ~~~p~~~~~~~~-~~nv~~~~~~p-q~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~----~~DQ~~na~rv~e~ 398 (488)
. +.+..... .-++.+.+|+. ..++++.+++ +|+|+|.++++||+++|+|+|++|. .++|..|+..+ .+
T Consensus 224 --~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i-~~ 297 (357)
T PRK00726 224 --L-EEVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARAL-VD 297 (357)
T ss_pred --H-HHHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHH-HH
Confidence 1 11111111 22377889984 4689999999 9999999999999999999999997 36899999999 59
Q ss_pred hcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHH
Q 011339 399 LNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKR 448 (488)
Q Consensus 399 ~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~ 448 (488)
.|.|..++.. .++++.|.++|.++++|++..++++++
T Consensus 298 ~~~g~~~~~~-------------~~~~~~l~~~i~~ll~~~~~~~~~~~~ 334 (357)
T PRK00726 298 AGAALLIPQS-------------DLTPEKLAEKLLELLSDPERLEAMAEA 334 (357)
T ss_pred CCCEEEEEcc-------------cCCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 9999999876 478999999999999988333333333
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.79 E-value=3.2e-17 Score=163.14 Aligned_cols=327 Identities=19% Similarity=0.147 Sum_probs=192.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCccccCC
Q 011339 11 HFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFDML 90 (488)
Q Consensus 11 kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~ 90 (488)
+|++.+.+..||....+.|++.|.++||+|++++....... ... ...+++++.++... ....
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~--~~~-----~~~~~~~~~~~~~~----~~~~------- 62 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEA--RLV-----PKAGIPLHTIPVGG----LRRK------- 62 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh--hcc-----cccCCceEEEEecC----cCCC-------
Confidence 48899999999999999999999999999999987632111 111 01246666665321 1000
Q ss_pred CchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCC--CcchHHHHHhcCCCcEEEecchHHHHHHHhhhccccccc
Q 011339 91 HSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTC--YPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSTVQE 168 (488)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~--~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 168 (488)
.....+..... .......+.+++++ .+||+|++... .+.+..+|...++|++.....
T Consensus 63 ~~~~~~~~~~~-~~~~~~~~~~~i~~--~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~------------------ 121 (350)
T cd03785 63 GSLKKLKAPFK-LLKGVLQARKILKK--FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN------------------ 121 (350)
T ss_pred ChHHHHHHHHH-HHHHHHHHHHHHHh--cCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC------------------
Confidence 00111111111 12234456677888 89999998753 334567788899998753100
Q ss_pred ccCCCCCccccCCCCCccccccccchHHHHHHHHHhhccccceEEEcCchhhhHHHHHHHHhhcCCceEEeCCCCCCCCC
Q 011339 169 NVTSNSDYLVVPGLPDQIEMTKVREKWKDFGEMVLAADMKSYGIIINTFEELELEYVKECKKTKGGKVWCLGPVSLCNKQ 248 (488)
Q Consensus 169 ~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~ 248 (488)
..++. .. +.. ....+.++..+-...+ . ..+.++.++|+.......
T Consensus 122 ---------~~~~~------------~~----~~~--~~~~~~vi~~s~~~~~-----~---~~~~~~~~i~n~v~~~~~ 166 (350)
T cd03785 122 ---------AVPGL------------AN----RLL--ARFADRVALSFPETAK-----Y---FPKDKAVVTGNPVREEIL 166 (350)
T ss_pred ---------CCccH------------HH----HHH--HHhhCEEEEcchhhhh-----c---CCCCcEEEECCCCchHHh
Confidence 00100 01 110 1224444444321111 1 123577888864322110
Q ss_pred cchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCC-hHHHHHHHHHHhcCCCCeEEEEeCCCCCchhhhhhhh
Q 011339 249 DIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLT-SSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLL 327 (488)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~-~~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~ 327 (488)
. .... .+.+...+++++|++..|+..... .+.+..++..+...+..+++.++.+. ...+.+
T Consensus 167 ~------------~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~--~~~l~~--- 228 (350)
T cd03785 167 A------------LDRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGD--LEEVKK--- 228 (350)
T ss_pred h------------hhhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCcc--HHHHHH---
Confidence 0 0001 122222334556767666664321 12232333444433344555665543 122211
Q ss_pred hHHHHHHhcCCCeEEeccc-chhhhhccCCcccccccCCchhHHHHhhcCCCEeecCc----ccccchhHHHHHHHhcce
Q 011339 328 EEKFEERVKGRGILILGWA-PQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPL----YGDQFWNEKLIVQVLNIG 402 (488)
Q Consensus 328 p~~~~~~~~~~nv~~~~~~-pq~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~----~~DQ~~na~rv~e~~G~G 402 (488)
.. ... ..|+++.+|+ +...+|+.+++ +|+++|.+|+.||+++|+|+|++|. ..+|..|+..+. +.|.|
T Consensus 229 --~~-~~~-~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~-~~g~g 301 (350)
T cd03785 229 --AY-EEL-GVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALV-KAGAA 301 (350)
T ss_pred --HH-hcc-CCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHH-hCCCE
Confidence 11 111 3689999998 45679999999 9999999999999999999999986 357888999994 99999
Q ss_pred EEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHH
Q 011339 403 VRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRA 449 (488)
Q Consensus 403 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a 449 (488)
..++.. ..++++|.++|.++++|++..+.+.+++
T Consensus 302 ~~v~~~-------------~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 335 (350)
T cd03785 302 VLIPQE-------------ELTPERLAAALLELLSDPERLKAMAEAA 335 (350)
T ss_pred EEEecC-------------CCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999764 3689999999999998874333444444
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.74 E-value=6.4e-16 Score=153.63 Aligned_cols=312 Identities=17% Similarity=0.149 Sum_probs=174.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCccccC
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFDM 89 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~ 89 (488)
|||+|++.+..||+...+.||++|.++||+|++++.+.... ..... ..+++++.++.. . ...
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~--~~~~~-----~~g~~~~~i~~~-------~-~~~--- 62 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLE--KRLVP-----KAGIEFYFIPVG-------G-LRR--- 62 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcch--hcccc-----cCCCceEEEecc-------C-cCC---
Confidence 58999999999999988899999999999999998753211 01100 125666665421 0 000
Q ss_pred CCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCC--cchHHHHHhcCCCcEEEecchHHHHHHHhhhcccccc
Q 011339 90 LHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCY--PWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSTVQ 167 (488)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~--~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 167 (488)
......+...... ......+.+++++ .+||+|++.... ..+..+++.+++|++.....
T Consensus 63 ~~~~~~l~~~~~~-~~~~~~l~~~i~~--~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~----------------- 122 (348)
T TIGR01133 63 KGSFRLIKTPLKL-LKAVFQARRILKK--FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQN----------------- 122 (348)
T ss_pred CChHHHHHHHHHH-HHHHHHHHHHHHh--cCCCEEEEcCCcccHHHHHHHHHcCCCEEEECCC-----------------
Confidence 0011111111111 2234466778888 899999997633 24555788889998742100
Q ss_pred cccCCCCCccccCCCCCccccccccchHHHHHHHHHhhccccceEEEcCchhhhHHHHHHHHhhcCCceEEeCCCCCCCC
Q 011339 168 ENVTSNSDYLVVPGLPDQIEMTKVREKWKDFGEMVLAADMKSYGIIINTFEELELEYVKECKKTKGGKVWCLGPVSLCNK 247 (488)
Q Consensus 168 ~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~ 247 (488)
..+ . ...... .+..+.++..+ +... +.+ ...+||.-.....
T Consensus 123 ----------~~~---~---------~~~~~~------~~~~d~ii~~~-~~~~--------~~~--~~~~i~n~v~~~~ 163 (348)
T TIGR01133 123 ----------AVP---G---------LTNKLL------SRFAKKVLISF-PGAK--------DHF--EAVLVGNPVRQEI 163 (348)
T ss_pred ----------CCc---c---------HHHHHH------HHHhCeeEECc-hhHh--------hcC--CceEEcCCcCHHH
Confidence 000 0 011111 12234444433 2111 111 2356664322110
Q ss_pred CcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHh---cCCCCeEEEEeCCCCCchhhhh
Q 011339 248 QDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLE---ASKKPFIWVIRGGNNTSKEIQE 324 (488)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~---~~~~~~v~~~~~~~~~~~~~~~ 324 (488)
.. .+.. .+++...+++++|.+..|+... ......+.++++ ..+..+++..+... .
T Consensus 164 ~~------------~~~~-~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~~~--~----- 221 (348)
T TIGR01133 164 RS------------LPVP-RERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTGKND--L----- 221 (348)
T ss_pred hc------------ccch-hhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECCcch--H-----
Confidence 00 0000 1122222244455554455443 221122223333 33455555444332 1
Q ss_pred hhhhHHHHHHhcCCCe-EEeccc--chhhhhccCCcccccccCCchhHHHHhhcCCCEeecCcc---cccchhHHHHHHH
Q 011339 325 WLLEEKFEERVKGRGI-LILGWA--PQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLY---GDQFWNEKLIVQV 398 (488)
Q Consensus 325 ~~~p~~~~~~~~~~nv-~~~~~~--pq~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~---~DQ~~na~rv~e~ 398 (488)
+.+.......++ .++.|. +...+|+.+++ +|+++|.+++.||+++|+|+|++|.. .+|..|+..+ ++
T Consensus 222 ----~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i-~~ 294 (348)
T TIGR01133 222 ----EKVKNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFL-ED 294 (348)
T ss_pred ----HHHHHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHH-HH
Confidence 122221212121 222333 45678999999 99999988999999999999999873 4678899999 59
Q ss_pred hcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCc
Q 011339 399 LNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGG 440 (488)
Q Consensus 399 ~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~ 440 (488)
.|.|..++.. ..++++|.+++.++++|++
T Consensus 295 ~~~G~~~~~~-------------~~~~~~l~~~i~~ll~~~~ 323 (348)
T TIGR01133 295 LGAGLVIRQK-------------ELLPEKLLEALLKLLLDPA 323 (348)
T ss_pred CCCEEEEecc-------------cCCHHHHHHHHHHHHcCHH
Confidence 9999988765 3689999999999999873
No 35
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.71 E-value=2.6e-15 Score=139.93 Aligned_cols=338 Identities=15% Similarity=0.166 Sum_probs=198.0
Q ss_pred CCCCEEEEEcC--CCccCHHHHHHHHHHHHHC--CCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCC
Q 011339 7 CQQPHFVLFPF--LAQGHMIPMIDTARLLAQH--GAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPE 82 (488)
Q Consensus 7 ~~~~kvl~~~~--~~~GHv~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 82 (488)
|+++||+|++. .+.||+..++.+|++|++. |.+|++++.......|.- ..+++++.+|.-... ..
T Consensus 7 ~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~--------~~gVd~V~LPsl~k~---~~ 75 (400)
T COG4671 7 SKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG--------PAGVDFVKLPSLIKG---DN 75 (400)
T ss_pred hccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC--------cccCceEecCceEec---CC
Confidence 47889999996 5899999999999999998 999999998755444421 247899988721111 11
Q ss_pred CCccccCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEEecchHHHHHHHhhhc
Q 011339 83 GCENFDMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLH 162 (488)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~ 162 (488)
|....... ..+ ..+....-.+.+...+++ .+||++|+|.+-+.. --+.+ |. ..|+.
T Consensus 76 G~~~~~d~-~~~----l~e~~~~Rs~lil~t~~~--fkPDi~IVd~~P~Gl--r~EL~--pt-------------L~yl~ 131 (400)
T COG4671 76 GEYGLVDL-DGD----LEETKKLRSQLILSTAET--FKPDIFIVDKFPFGL--RFELL--PT-------------LEYLK 131 (400)
T ss_pred Cceeeeec-CCC----HHHHHHHHHHHHHHHHHh--cCCCEEEEeccccch--hhhhh--HH-------------HHHHh
Confidence 11111000 011 112222223445666677 899999999775431 11110 11 01111
Q ss_pred ccccccccCCCCCccccCCC------CCccccccccchHHHHHHHHHhhccccceEEEcCchhhhHHHHH-HHHhhcCCc
Q 011339 163 TSTVQENVTSNSDYLVVPGL------PDQIEMTKVREKWKDFGEMVLAADMKSYGIIINTFEELELEYVK-ECKKTKGGK 235 (488)
Q Consensus 163 ~~~~~~~~~~~~~~~~~p~l------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~-~~~~~~~~~ 235 (488)
.. . +...-++ |....-+|.........+ +--+.+++..-+.+...... .+......+
T Consensus 132 ~~---------~-t~~vL~lr~i~D~p~~~~~~w~~~~~~~~I~------r~yD~V~v~GdP~f~d~~~~~~~~~~i~~k 195 (400)
T COG4671 132 TT---------G-TRLVLGLRSIRDIPQELEADWRRAETVRLIN------RFYDLVLVYGDPDFYDPLTEFPFAPAIRAK 195 (400)
T ss_pred hc---------C-CcceeehHhhhhchhhhccchhhhHHHHHHH------HhheEEEEecCccccChhhcCCccHhhhhh
Confidence 00 0 0000011 100001111111111111 11233444443332211000 011223367
Q ss_pred eEEeCCCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhc-CCCCeEEEE-e
Q 011339 236 VWCLGPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEA-SKKPFIWVI-R 313 (488)
Q Consensus 236 ~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~-~~~~~v~~~-~ 313 (488)
+.|+|-+..+ -+.. +. .|... +++..|+||-|-... ..+.+.+.++|..- .+.+-.|.+ .
T Consensus 196 ~~ytG~vq~~--~~~~------------~~--p~~~~-pE~~~Ilvs~GGG~d-G~eLi~~~l~A~~~l~~l~~~~~ivt 257 (400)
T COG4671 196 MRYTGFVQRS--LPHL------------PL--PPHEA-PEGFDILVSVGGGAD-GAELIETALAAAQLLAGLNHKWLIVT 257 (400)
T ss_pred eeEeEEeecc--CcCC------------CC--CCcCC-CccceEEEecCCChh-hHHHHHHHHHHhhhCCCCCcceEEEe
Confidence 8999987211 1100 00 01111 455578899886665 56677777666554 444434543 3
Q ss_pred CCCCCchhhhhhhhhHHHHHHh-----cCCCeEEecccch-hhhhccCCcccccccCCchhHHHHhhcCCCEeecCccc-
Q 011339 314 GGNNTSKEIQEWLLEEKFEERV-----KGRGILILGWAPQ-VLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYG- 386 (488)
Q Consensus 314 ~~~~~~~~~~~~~~p~~~~~~~-----~~~nv~~~~~~pq-~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~- 386 (488)
+.. +|+..+... +.+++.+..|--+ .+++.-++. +|+-||+||++|-|++|+|.+++|...
T Consensus 258 GP~----------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p 325 (400)
T COG4671 258 GPF----------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAP 325 (400)
T ss_pred CCC----------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCC
Confidence 333 554333321 2478999999755 679999999 999999999999999999999999864
Q ss_pred --ccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccC
Q 011339 387 --DQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEG 439 (488)
Q Consensus 387 --DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~ 439 (488)
+|-.-|+|+ +++|+.-++..+ .++++.+++++...++-+
T Consensus 326 ~eEQliRA~Rl-~~LGL~dvL~pe-------------~lt~~~La~al~~~l~~P 366 (400)
T COG4671 326 REEQLIRAQRL-EELGLVDVLLPE-------------NLTPQNLADALKAALARP 366 (400)
T ss_pred cHHHHHHHHHH-HhcCcceeeCcc-------------cCChHHHHHHHHhcccCC
Confidence 899999999 699999999887 699999999999888733
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.70 E-value=2.2e-15 Score=151.11 Aligned_cols=353 Identities=11% Similarity=0.032 Sum_probs=197.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCcccc
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFD 88 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~ 88 (488)
-+||+|.+.++.||+.|. +|+++|.++|++|+|+..... .+++... ...+.+..++ ..++
T Consensus 5 ~~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~-----~~~~~~~~l~--------v~G~---- 64 (385)
T TIGR00215 5 IPTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGC-----EVLYSMEELS--------VMGL---- 64 (385)
T ss_pred CCeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcC-----ccccChHHhh--------hccH----
Confidence 368999999999999999 999999999999999976521 2222200 0012222221 0110
Q ss_pred CCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCC-Ccc--hHHHHHhcCCCcEEEecchHHHHHHHhhhcccc
Q 011339 89 MLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTC-YPW--TVDTAARFNIPRISFHGFSCFCLLCLYNLHTST 165 (488)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~-~~~--~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 165 (488)
...+..+... ........+++++ .+||+||.-.+ .+. ....|+.+|||++.+.+.-...
T Consensus 65 ----~~~l~~~~~~-~~~~~~~~~~l~~--~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~wa----------- 126 (385)
T TIGR00215 65 ----REVLGRLGRL-LKIRKEVVQLAKQ--AKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQVWA----------- 126 (385)
T ss_pred ----HHHHHHHHHH-HHHHHHHHHHHHh--cCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcHhh-----------
Confidence 0111122221 2234477778888 89999997554 223 2338899999998753211000
Q ss_pred cccccCCCCCccccCCCCCccccccccchHHHHHHHHHhhccccceEEEcCchhhhHHHHHHHHhhcCCceEEeCCCCCC
Q 011339 166 VQENVTSNSDYLVVPGLPDQIEMTKVREKWKDFGEMVLAADMKSYGIIINTFEELELEYVKECKKTKGGKVWCLGPVSLC 245 (488)
Q Consensus 166 ~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~ 245 (488)
+.. .-...+.+. .+.+ +-+++ .+.+++ .+ .+.+..+||.-..+
T Consensus 127 ----------------w~~---------~~~r~l~~~------~d~v-~~~~~-~e~~~~---~~-~g~~~~~vGnPv~~ 169 (385)
T TIGR00215 127 ----------------WRK---------WRAKKIEKA------TDFL-LAILP-FEKAFY---QK-KNVPCRFVGHPLLD 169 (385)
T ss_pred ----------------cCc---------chHHHHHHH------HhHh-hccCC-CcHHHH---Hh-cCCCEEEECCchhh
Confidence 000 001111111 1211 22222 122222 21 23466789933222
Q ss_pred CCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhcC-----CCCeEEEEeCCCCCch
Q 011339 246 NKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEAS-----KKPFIWVIRGGNNTSK 320 (488)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~v~~~~~~~~~~~ 320 (488)
..... .....+..+.+.-.+++++|.+-.||....-......++++++.. +.++++...... ...
T Consensus 170 ~~~~~---------~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~-~~~ 239 (385)
T TIGR00215 170 AIPLY---------KPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFK-RRL 239 (385)
T ss_pred hcccc---------CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCch-hHH
Confidence 11000 001122222223333567888888887663222333445444322 234555443332 111
Q ss_pred hhhhhhhhHHHHHHhc-CCCeEEecccchhhhhccCCcccccccCCchhHHHHhhcCCCEeec----Cccc---------
Q 011339 321 EIQEWLLEEKFEERVK-GRGILILGWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITW----PLYG--------- 386 (488)
Q Consensus 321 ~~~~~~~p~~~~~~~~-~~nv~~~~~~pq~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~----P~~~--------- 386 (488)
.+.+ +..... ...+.+..+ ....+++.+|+ +|+-.|..|+ |++++|+|+|++ |+..
T Consensus 240 ~~~~------~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~ 309 (385)
T TIGR00215 240 QFEQ------IKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKT 309 (385)
T ss_pred HHHH------HHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcC
Confidence 1111 111111 123333322 33568888888 9999999888 999999999999 8642
Q ss_pred ccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccC----cchHHHHHHHHHHHHHHHHHHhc
Q 011339 387 DQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEG----GETDDRRKRAREFQIMAKRATEE 462 (488)
Q Consensus 387 DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~----~~~~~~~~~a~~l~~~~~~~~~~ 462 (488)
.|..|+..++ ..++...+.-. ..+++.|.+++.++|.|+ +..+.+++..+++++.+. +
T Consensus 310 ~~~~~~nil~-~~~~~pel~q~-------------~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~----~ 371 (385)
T TIGR00215 310 DYISLPNILA-NRLLVPELLQE-------------ECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIY----C 371 (385)
T ss_pred CeeeccHHhc-CCccchhhcCC-------------CCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhc----C
Confidence 3788999995 88888887644 599999999999999998 777788888888888753 3
Q ss_pred CCchHHHHHHHH
Q 011339 463 TRSSSLMIKLLI 474 (488)
Q Consensus 463 gg~~~~~~~~~i 474 (488)
+|.+.++.+.++
T Consensus 372 ~~~~~~~a~~i~ 383 (385)
T TIGR00215 372 NADSERAAQAVL 383 (385)
T ss_pred CCHHHHHHHHHh
Confidence 455555544443
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.68 E-value=2.9e-14 Score=143.56 Aligned_cols=355 Identities=14% Similarity=0.142 Sum_probs=191.8
Q ss_pred CCCEEEEEcCC-CccCHHHHHHHHHHHHHCCCeEEEEeCCcc--hhhhHHHHHh-hhcCCCCeEEEEeeCCccccCC-CC
Q 011339 8 QQPHFVLFPFL-AQGHMIPMIDTARLLAQHGAAITIVTTPAN--AARFKTVVAR-AMQSGLPLQLIEIQFPYQEAGV-PE 82 (488)
Q Consensus 8 ~~~kvl~~~~~-~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l-~~ 82 (488)
++|||++++.. +.||..+..+|+++|.++||+|.+++.... .+.+...... +. ..++.. |... ++ ..
T Consensus 3 ~~~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~~~y~---~~~~~~----~~~~-~~~~~ 74 (380)
T PRK13609 3 KNPKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHPVITEITKYLYL---KSYTIG----KELY-RLFYY 74 (380)
T ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcchHHHHHHHHHHH---HHHHHh----HHHH-HHHHh
Confidence 67899999987 559999999999999999999777655321 0001110000 00 000000 0000 00 00
Q ss_pred CCccccCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcchHH--HHHhcCCCcEEEecchHHHHHHHhh
Q 011339 83 GCENFDMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYPWTVD--TAARFNIPRISFHGFSCFCLLCLYN 160 (488)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~~--~a~~lgiP~v~~~~~~~~~~~~~~~ 160 (488)
.... ........ .........+.+++++ .+||+|+++.-.+.... .+..+++|++.+.+..
T Consensus 75 ~~~~---~~~~~~~~---~~~~~~~~~l~~~l~~--~~pD~Vi~~~~~~~~~~~~~~~~~~ip~~~~~td~--------- 137 (380)
T PRK13609 75 GVEK---IYDKKIFS---WYANFGRKRLKLLLQA--EKPDIVINTFPIIAVPELKKQTGISIPTYNVLTDF--------- 137 (380)
T ss_pred ccCc---ccchHHHH---HHHHHHHHHHHHHHHH--hCcCEEEEcChHHHHHHHHHhcCCCCCeEEEeCCC---------
Confidence 0000 00001111 1112234678889998 89999999864333222 2334568876432210
Q ss_pred hcccccccccCCCCCccccCCCCCccccccccchHHHHHHHHHhhccccceEEEcCchhhhHHHHHHHHhh-cC-CceEE
Q 011339 161 LHTSTVQENVTSNSDYLVVPGLPDQIEMTKVREKWKDFGEMVLAADMKSYGIIINTFEELELEYVKECKKT-KG-GKVWC 238 (488)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~-~~-~~~~~ 238 (488)
+.+..+ ..+..+.++..+- ... +.+.+. .+ .++..
T Consensus 138 --------------------~~~~~~------------------~~~~ad~i~~~s~-~~~----~~l~~~gi~~~ki~v 174 (380)
T PRK13609 138 --------------------CLHKIW------------------VHREVDRYFVATD-HVK----KVLVDIGVPPEQVVE 174 (380)
T ss_pred --------------------CCCccc------------------ccCCCCEEEECCH-HHH----HHHHHcCCChhHEEE
Confidence 000000 0234455555542 211 122211 11 35777
Q ss_pred eC-CCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhcC-CCCeEEEEeCCC
Q 011339 239 LG-PVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEAS-KKPFIWVIRGGN 316 (488)
Q Consensus 239 vG-pl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~-~~~~v~~~~~~~ 316 (488)
+| |+...-... .....+.+-+.-.+++++|++..|+..... .+..+++++... +.++++..+.+.
T Consensus 175 ~G~p~~~~f~~~-----------~~~~~~~~~~~l~~~~~~il~~~G~~~~~k--~~~~li~~l~~~~~~~~viv~G~~~ 241 (380)
T PRK13609 175 TGIPIRSSFELK-----------INPDIIYNKYQLCPNKKILLIMAGAHGVLG--NVKELCQSLMSVPDLQVVVVCGKNE 241 (380)
T ss_pred ECcccChHHcCc-----------CCHHHHHHHcCCCCCCcEEEEEcCCCCCCc--CHHHHHHHHhhCCCcEEEEEeCCCH
Confidence 77 432110000 011112222222234567888778775421 234566666543 456565554332
Q ss_pred CCchhhhhhhhhHHHHHHh--cCCCeEEecccch-hhhhccCCcccccccCCchhHHHHhhcCCCEeec-CcccccchhH
Q 011339 317 NTSKEIQEWLLEEKFEERV--KGRGILILGWAPQ-VLILSHPSIGGFLTHCSWNSSLEGISAGVPLITW-PLYGDQFWNE 392 (488)
Q Consensus 317 ~~~~~~~~~~~p~~~~~~~--~~~nv~~~~~~pq-~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~-P~~~DQ~~na 392 (488)
. +-+.+.... ...|+++.+|+++ .++++.+++ +|+.+|..|+.||+++|+|+|+. |..+.+..|+
T Consensus 242 ----~-----~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~ 310 (380)
T PRK13609 242 ----A-----LKQSLEDLQETNPDALKVFGYVENIDELFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENA 310 (380)
T ss_pred ----H-----HHHHHHHHHhcCCCcEEEEechhhHHHHHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHH
Confidence 0 111222211 1258999999987 479999998 99999988999999999999985 6777778899
Q ss_pred HHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Q 011339 393 KLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETRSSSLMIKL 472 (488)
Q Consensus 393 ~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~ 472 (488)
..+ ++.|+|+.. -+.+++.++|.++++|++..+.++++++++ ....+....++.
T Consensus 311 ~~~-~~~G~~~~~-----------------~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~--------~~~~s~~~i~~~ 364 (380)
T PRK13609 311 MYF-ERKGAAVVI-----------------RDDEEVFAKTEALLQDDMKLLQMKEAMKSL--------YLPEPADHIVDD 364 (380)
T ss_pred HHH-HhCCcEEEE-----------------CCHHHHHHHHHHHHCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence 999 599998754 367899999999999874333444443332 223455555555
Q ss_pred HHHHHHcC
Q 011339 473 LIQDIMQQ 480 (488)
Q Consensus 473 ~i~~~~~~ 480 (488)
+.+.+..+
T Consensus 365 i~~~~~~~ 372 (380)
T PRK13609 365 ILAENHVE 372 (380)
T ss_pred HHHhhhhh
Confidence 55555443
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.66 E-value=2e-14 Score=137.56 Aligned_cols=256 Identities=16% Similarity=0.133 Sum_probs=149.9
Q ss_pred CccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCccccCCCchhhHHH
Q 011339 19 AQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFDMLHSTDLVSN 98 (488)
Q Consensus 19 ~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~ 98 (488)
+.||+.++++||++|.++||+|+|++........ +.+.+. ++.++.++.+ .+ .
T Consensus 13 G~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~-~~i~~~-----g~~v~~~~~~-------~~------~-------- 65 (279)
T TIGR03590 13 GLGHVMRCLTLARALHAQGAEVAFACKPLPGDLI-DLLLSA-----GFPVYELPDE-------SS------R-------- 65 (279)
T ss_pred cccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHH-HHHHHc-----CCeEEEecCC-------Cc------h--------
Confidence 7899999999999999999999999987544332 233322 6766666411 00 0
Q ss_pred HHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcchH--HHHHhcCCCcEEEecchHHHHHHHhhhcccccccccCCCCCc
Q 011339 99 FFKSLRLLQLPLENLLKELTPKPSCIVSDTCYPWTV--DTAARFNIPRISFHGFSCFCLLCLYNLHTSTVQENVTSNSDY 176 (488)
Q Consensus 99 ~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~--~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (488)
..-..++.++++. .+||+||+|.+..... ...+..+.+.+.+ .- ...
T Consensus 66 -----~~d~~~~~~~l~~--~~~d~vV~D~y~~~~~~~~~~k~~~~~l~~i-DD----------------------~~~- 114 (279)
T TIGR03590 66 -----YDDALELINLLEE--EKFDILIVDHYGLDADWEKLIKEFGRKILVI-DD----------------------LAD- 114 (279)
T ss_pred -----hhhHHHHHHHHHh--cCCCEEEEcCCCCCHHHHHHHHHhCCeEEEE-ec----------------------CCC-
Confidence 1123446777777 7999999999754322 2223334444443 00 000
Q ss_pred cccCCCCCccccccccchHHHHHHHHHhhccccceEEEcCchhhhHHHHHHHHhhcC-CceEEeCCCCCCCCCcchhhhh
Q 011339 177 LVVPGLPDQIEMTKVREKWKDFGEMVLAADMKSYGIIINTFEELELEYVKECKKTKG-GKVWCLGPVSLCNKQDIDKAER 255 (488)
Q Consensus 177 ~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~-~~~~~vGpl~~~~~~~~~~~~~ 255 (488)
- ...++ +++|.....+.. . +....+ ....+.||=...
T Consensus 115 --~--------------------------~~~~D-~vin~~~~~~~~--~-y~~~~~~~~~~l~G~~Y~~---------- 152 (279)
T TIGR03590 115 --R--------------------------PHDCD-LLLDQNLGADAS--D-YQGLVPANCRLLLGPSYAL---------- 152 (279)
T ss_pred --C--------------------------CcCCC-EEEeCCCCcCHh--H-hcccCcCCCeEEecchHHh----------
Confidence 0 00112 233332221111 1 111111 235677761111
Q ss_pred CCCCcccchhhhccc---CCCCCCeEEEEeeCCccCCChHHHHHHHHHHhcC--CCCeEEEEeCCCCCchhhhhhhhhHH
Q 011339 256 GKKAAVDISECLNWL---DSWPPNSVVYVCLGSICNLTSSQMIELGLGLEAS--KKPFIWVIRGGNNTSKEIQEWLLEEK 330 (488)
Q Consensus 256 ~~~~~~~~~~~~~~l---~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~--~~~~v~~~~~~~~~~~~~~~~~~p~~ 330 (488)
+++++.+.- ...++.+.|+|++|...... ....+++++... +.++.++++...... +.
T Consensus 153 ------lr~eF~~~~~~~~~~~~~~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~~~~~---------~~ 215 (279)
T TIGR03590 153 ------LREEFYQLATANKRRKPLRRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSSNPNL---------DE 215 (279)
T ss_pred ------hhHHHHHhhHhhhcccccCeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCCCcCH---------HH
Confidence 111111110 11112347899999555422 344556666543 456677776654111 12
Q ss_pred HHHHh-cCCCeEEecccchh-hhhccCCcccccccCCchhHHHHhhcCCCEeecCcccccchhHHH
Q 011339 331 FEERV-KGRGILILGWAPQV-LILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQFWNEKL 394 (488)
Q Consensus 331 ~~~~~-~~~nv~~~~~~pq~-~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~DQ~~na~r 394 (488)
+.... ...|+.+..|+++. .+|+.+++ +||+|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 216 l~~~~~~~~~i~~~~~~~~m~~lm~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 216 LKKFAKEYPNIILFIDVENMAELMNEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHHHHHhCCCEEEEeCHHHHHHHHHHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 22211 24689999999985 79999999 999999 9999999999999999999999999875
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.60 E-value=1.5e-13 Score=138.30 Aligned_cols=334 Identities=13% Similarity=0.056 Sum_probs=168.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCcccc
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFD 88 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~ 88 (488)
+|||+|++.+..||+.|.+ ++++|.++++++.+++.... .+.+.. .. ..+.++.++. .+.
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~----~~-~~~~~~~l~~--------~g~---- 60 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAG----CE-SLFDMEELAV--------MGL---- 60 (380)
T ss_pred CceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCC----Cc-cccCHHHhhh--------ccH----
Confidence 5799999999999999999 99999999888888765421 122110 00 0122221110 000
Q ss_pred CCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCC-Ccch--HHHHHhcCCCcEEEecchHHHHHHHhhhcccc
Q 011339 89 MLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTC-YPWT--VDTAARFNIPRISFHGFSCFCLLCLYNLHTST 165 (488)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~-~~~~--~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 165 (488)
...+..+. ........+.+++++ .+||+|++-.+ ..+. ...+...|||++.+.... .
T Consensus 61 ----~~~~~~~~-~~~~~~~~~~~~l~~--~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~--~----------- 120 (380)
T PRK00025 61 ----VEVLPRLP-RLLKIRRRLKRRLLA--EPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPS--V----------- 120 (380)
T ss_pred ----HHHHHHHH-HHHHHHHHHHHHHHH--cCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCc--h-----------
Confidence 01111111 112345567788888 89999987433 2233 334677899987642110 0
Q ss_pred cccccCCCCCccccCCCCCccccccccchHHHHHHHHHhhccccceEEEcCchhhhHHHHHHHHhhcCCceEEeCCCCCC
Q 011339 166 VQENVTSNSDYLVVPGLPDQIEMTKVREKWKDFGEMVLAADMKSYGIIINTFEELELEYVKECKKTKGGKVWCLGPVSLC 245 (488)
Q Consensus 166 ~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~ 245 (488)
....++. .. + ..+..+.++..+-. +... +.. .+..+.++|....+
T Consensus 121 ----------~~~~~~~------------~~----~---~~~~~d~i~~~~~~--~~~~---~~~-~g~~~~~~G~p~~~ 165 (380)
T PRK00025 121 ----------WAWRQGR------------AF----K---IAKATDHVLALFPF--EAAF---YDK-LGVPVTFVGHPLAD 165 (380)
T ss_pred ----------hhcCchH------------HH----H---HHHHHhhheeCCcc--CHHH---HHh-cCCCeEEECcCHHH
Confidence 0000000 11 1 11223333333311 1112 221 22347788832211
Q ss_pred CCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhc----C-CCCeEEEEeCCCCCch
Q 011339 246 NKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEA----S-KKPFIWVIRGGNNTSK 320 (488)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~----~-~~~~v~~~~~~~~~~~ 320 (488)
.... ........+.+.-.+++++|++..||...........++++++. . +.+++|..+... ..
T Consensus 166 ~~~~----------~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~-~~- 233 (380)
T PRK00025 166 AIPL----------LPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPK-RR- 233 (380)
T ss_pred hccc----------ccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChh-hH-
Confidence 1000 00112222223322345577777776554211223344444432 1 345666544222 11
Q ss_pred hhhhhhhhHHHHHHhcC---CCeEEecccchhhhhccCCcccccccCCchhHHHHhhcCCCEeecCcccc--------cc
Q 011339 321 EIQEWLLEEKFEERVKG---RGILILGWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGD--------QF 389 (488)
Q Consensus 321 ~~~~~~~p~~~~~~~~~---~nv~~~~~~pq~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~D--------Q~ 389 (488)
+.+...... -++.+.. -.-..+++.+++ +|+.+|.+++ |++++|+|+|++|-..- |.
T Consensus 234 --------~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~ 301 (380)
T PRK00025 234 --------EQIEEALAEYAGLEVTLLD-GQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLV 301 (380)
T ss_pred --------HHHHHHHhhcCCCCeEEEc-ccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHH
Confidence 112221111 1333322 123568889998 9999998887 99999999999954321 21
Q ss_pred hh-----HHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHH
Q 011339 390 WN-----EKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIM 455 (488)
Q Consensus 390 ~n-----a~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~ 455 (488)
.| +..+ ...+++..+... ..+++.|.+++.++++|++..+++.++++.+.+.
T Consensus 302 ~~~~~~l~~~~-~~~~~~~~~~~~-------------~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~ 358 (380)
T PRK00025 302 KVPYVSLPNLL-AGRELVPELLQE-------------EATPEKLARALLPLLADGARRQALLEGFTELHQQ 358 (380)
T ss_pred cCCeeehHHHh-cCCCcchhhcCC-------------CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 11 1222 122223223222 4789999999999999985555566666555544
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.59 E-value=7.1e-13 Score=133.65 Aligned_cols=148 Identities=14% Similarity=0.234 Sum_probs=101.2
Q ss_pred CCCeEEEEeeCCccCCChHHHHHHHHHH-hcC-CCCeEEEEeCCCCCchhhhhhhhhHHHHHHh-cCCCeEEecccch-h
Q 011339 274 PPNSVVYVCLGSICNLTSSQMIELGLGL-EAS-KKPFIWVIRGGNNTSKEIQEWLLEEKFEERV-KGRGILILGWAPQ-V 349 (488)
Q Consensus 274 ~~~~vV~vs~Gs~~~~~~~~~~~~~~a~-~~~-~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~nv~~~~~~pq-~ 349 (488)
+++++|++..|+.... ..+..+++++ +.. +.++++..+.+. . +-+.+.... ...++.+.+|+++ .
T Consensus 200 ~~~~~ilv~~G~lg~~--k~~~~li~~~~~~~~~~~~vvv~G~~~----~-----l~~~l~~~~~~~~~v~~~G~~~~~~ 268 (391)
T PRK13608 200 PDKQTILMSAGAFGVS--KGFDTMITDILAKSANAQVVMICGKSK----E-----LKRSLTAKFKSNENVLILGYTKHMN 268 (391)
T ss_pred CCCCEEEEECCCcccc--hhHHHHHHHHHhcCCCceEEEEcCCCH----H-----HHHHHHHHhccCCCeEEEeccchHH
Confidence 3556888888987631 2233344443 222 345555544332 1 111222222 2357888899976 4
Q ss_pred hhhccCCcccccccCCchhHHHHhhcCCCEeec-CcccccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHH
Q 011339 350 LILSHPSIGGFLTHCSWNSSLEGISAGVPLITW-PLYGDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDV 428 (488)
Q Consensus 350 ~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~-P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l 428 (488)
.+++.+++ +|+..|..|+.||++.|+|+|++ |..+.|..|+..+ ++.|+|+.. -+.+++
T Consensus 269 ~~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~-~~~G~g~~~-----------------~~~~~l 328 (391)
T PRK13608 269 EWMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYF-EEKGFGKIA-----------------DTPEEA 328 (391)
T ss_pred HHHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHH-HhCCcEEEe-----------------CCHHHH
Confidence 68999999 99998888999999999999998 7767777899999 599999764 367889
Q ss_pred HHHHHHHHccCcchHHHHHHHHHH
Q 011339 429 VKAINILMDEGGETDDRRKRAREF 452 (488)
Q Consensus 429 ~~ai~~~l~~~~~~~~~~~~a~~l 452 (488)
.++|.++++|++..+.+++|++++
T Consensus 329 ~~~i~~ll~~~~~~~~m~~~~~~~ 352 (391)
T PRK13608 329 IKIVASLTNGNEQLTNMISTMEQD 352 (391)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999999998875444455555443
No 41
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.49 E-value=1.4e-11 Score=123.84 Aligned_cols=334 Identities=14% Similarity=0.076 Sum_probs=171.3
Q ss_pred CccCHHHHHHHHHHHHH--CCCeEE---EEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCccccCCCch
Q 011339 19 AQGHMIPMIDTARLLAQ--HGAAIT---IVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFDMLHST 93 (488)
Q Consensus 19 ~~GHv~p~l~LA~~L~~--rGH~Vt---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~ 93 (488)
++|-=.-.++||++|++ .|++|. |+++..-. ++...+..+ .+..+| ..++... ...
T Consensus 6 ghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~-------e~~~ip~~g-~~~~~~--------sgg~~~~---~~~ 66 (396)
T TIGR03492 6 GHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAY-------QNLGIPIIG-PTKELP--------SGGFSYQ---SLR 66 (396)
T ss_pred CchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHH-------hhCCCceeC-CCCCCC--------CCCccCC---CHH
Confidence 45555667889999998 599999 99887321 111001111 222222 1121111 111
Q ss_pred hhHHHHHH-HHHHhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEEecchHHHHHHHhhhcccccccccCC
Q 011339 94 DLVSNFFK-SLRLLQLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSTVQENVTS 172 (488)
Q Consensus 94 ~~~~~~~~-~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (488)
..+..++. ....... -..+++....+||+||+-.-+. +..+|...|+|++.+.+.-.-.+ +.. . .....
T Consensus 67 ~~~~~~~~gl~~~~~~-~~~~~~~~~~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~-----~~~-~--~~~~~ 136 (396)
T TIGR03492 67 GLLRDLRAGLVGLTLG-QWRALRKWAKKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYY-----WES-G--PRRSP 136 (396)
T ss_pred HHHHHHHhhHHHHHHH-HHHHHHHHhhcCCEEEEECcHH-HHHHHHHcCCCceEEEeecccee-----ecC-C--CCCcc
Confidence 22222222 2222222 2233444012899999887554 88899999999998644311110 000 0 00000
Q ss_pred CCCccccCCCCCccccccccchHHHHHHHHHhhccccceEEEcCchhhhHHHHHHHHhhcCCceEEeC-CCCCCCCCcch
Q 011339 173 NSDYLVVPGLPDQIEMTKVREKWKDFGEMVLAADMKSYGIIINTFEELELEYVKECKKTKGGKVWCLG-PVSLCNKQDID 251 (488)
Q Consensus 173 ~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~~vG-pl~~~~~~~~~ 251 (488)
.......||+.. + .| + ......+....+.-+++ .+.+ .+++ .+.++.|+| |+...-..
T Consensus 137 ~~~~~~~~G~~~---~-----p~-e----~n~l~~~~a~~v~~~~~-~t~~---~l~~-~g~k~~~vGnPv~d~l~~--- 195 (396)
T TIGR03492 137 SDEYHRLEGSLY---L-----PW-E----RWLMRSRRCLAVFVRDR-LTAR---DLRR-QGVRASYLGNPMMDGLEP--- 195 (396)
T ss_pred chhhhccCCCcc---C-----HH-H----HHHhhchhhCEEeCCCH-HHHH---HHHH-CCCeEEEeCcCHHhcCcc---
Confidence 000111233321 0 11 1 11112222223333332 2222 2322 235899999 55321110
Q ss_pred hhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhcC----CCCeEEEEeCCCCCchhhhhhhh
Q 011339 252 KAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEAS----KKPFIWVIRGGNNTSKEIQEWLL 327 (488)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~----~~~~v~~~~~~~~~~~~~~~~~~ 327 (488)
... .-+ .+++++|.+--||....-...+..++++++.. +..|++.+.+.. +...+.+. +
T Consensus 196 ----------~~~---~~l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~-~~~~~~~~-l 258 (396)
T TIGR03492 196 ----------PER---KPL--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSL-SLEKLQAI-L 258 (396)
T ss_pred ----------ccc---ccc--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCC-CHHHHHHH-H
Confidence 000 011 22456888989988663333334455554432 567777774444 22222110 1
Q ss_pred hH-HHHH---------HhcCCCeEEecccc-hhhhhccCCcccccccCCchhHHHHhhcCCCEeecCcccccchhHHHHH
Q 011339 328 EE-KFEE---------RVKGRGILILGWAP-QVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQFWNEKLIV 396 (488)
Q Consensus 328 p~-~~~~---------~~~~~nv~~~~~~p-q~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~ 396 (488)
.+ ++.. ....+++.+..+.. ..++++.+++ +|+-.|..| .|++..|+|+|++|.-..|. |+...
T Consensus 259 ~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~- 333 (396)
T TIGR03492 259 EDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFA- 333 (396)
T ss_pred HhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHH-
Confidence 00 0000 00012345545543 3669999999 999999766 99999999999999866676 98877
Q ss_pred HHh----cceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccC
Q 011339 397 QVL----NIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEG 439 (488)
Q Consensus 397 e~~----G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~ 439 (488)
++. |.++.+.. .+.+.|.+++.++++|+
T Consensus 334 ~~~~~l~g~~~~l~~---------------~~~~~l~~~l~~ll~d~ 365 (396)
T TIGR03492 334 EAQSRLLGGSVFLAS---------------KNPEQAAQVVRQLLADP 365 (396)
T ss_pred HhhHhhcCCEEecCC---------------CCHHHHHHHHHHHHcCH
Confidence 464 77776643 45599999999999986
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.47 E-value=1.6e-11 Score=123.66 Aligned_cols=136 Identities=14% Similarity=0.101 Sum_probs=92.1
Q ss_pred CCCeEEEEeeCCccCCChHH-HHHHHHHHh-----cCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEEecccc
Q 011339 274 PPNSVVYVCLGSICNLTSSQ-MIELGLGLE-----ASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAP 347 (488)
Q Consensus 274 ~~~~vV~vs~Gs~~~~~~~~-~~~~~~a~~-----~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~p 347 (488)
+++++|++..|+........ +..+...+. ..+.++++..+.+. . +-+.+.......++.+.+|++
T Consensus 204 ~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~----~-----~~~~L~~~~~~~~v~~~G~~~ 274 (382)
T PLN02605 204 EDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNK----K-----LQSKLESRDWKIPVKVRGFVT 274 (382)
T ss_pred CCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCH----H-----HHHHHHhhcccCCeEEEeccc
Confidence 45667877777665433332 223322221 12345555555432 1 111222211234688889988
Q ss_pred h-hhhhccCCcccccccCCchhHHHHhhcCCCEeecCcccccc-hhHHHHHHHhcceEEecccCCCCCCcccccccccCH
Q 011339 348 Q-VLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQF-WNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKK 425 (488)
Q Consensus 348 q-~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~DQ~-~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~ 425 (488)
+ .++++.+|+ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+. +.|.|+.+ -++
T Consensus 275 ~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~-~~g~g~~~-----------------~~~ 334 (382)
T PLN02605 275 NMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVV-DNGFGAFS-----------------ESP 334 (382)
T ss_pred cHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHH-hCCceeec-----------------CCH
Confidence 6 558999999 999999999999999999999998766665 6999894 89998754 378
Q ss_pred HHHHHHHHHHHcc
Q 011339 426 EDVVKAINILMDE 438 (488)
Q Consensus 426 ~~l~~ai~~~l~~ 438 (488)
++|.++|.++++|
T Consensus 335 ~~la~~i~~ll~~ 347 (382)
T PLN02605 335 KEIARIVAEWFGD 347 (382)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999987
No 43
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.46 E-value=1.7e-15 Score=134.00 Aligned_cols=136 Identities=18% Similarity=0.241 Sum_probs=96.8
Q ss_pred EEEEeeCCccCCC-hHHHHHHHHHHhc--CCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhc-CCCeEEecccc-hhhhh
Q 011339 278 VVYVCLGSICNLT-SSQMIELGLGLEA--SKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVK-GRGILILGWAP-QVLIL 352 (488)
Q Consensus 278 vV~vs~Gs~~~~~-~~~~~~~~~a~~~--~~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~nv~~~~~~p-q~~ll 352 (488)
+|+|+.||..... .+.+..++..+.. ...++++.++... . .. ....+ .. ..|+.+.+|.+ ...++
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~-~-~~-----~~~~~---~~~~~~v~~~~~~~~m~~~m 70 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNN-Y-EE-----LKIKV---ENFNPNVKVFGFVDNMAELM 70 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCE-C-HH-----HCCCH---CCTTCCCEEECSSSSHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCc-H-HH-----HHHHH---hccCCcEEEEechhhHHHHH
Confidence 4899999887621 1112223333322 2467888887664 1 11 11100 01 15889999999 68899
Q ss_pred ccCCcccccccCCchhHHHHhhcCCCEeecCccc----ccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHH
Q 011339 353 SHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYG----DQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDV 428 (488)
Q Consensus 353 ~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~----DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l 428 (488)
+.+++ +|||||.||++|++++|+|+|++|... +|..||..++ +.|+|..+... ..+.+.|
T Consensus 71 ~~aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~-~~g~~~~~~~~-------------~~~~~~L 134 (167)
T PF04101_consen 71 AAADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELA-KKGAAIMLDES-------------ELNPEEL 134 (167)
T ss_dssp HHHSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHH-HCCCCCCSECC-------------C-SCCCH
T ss_pred HHcCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHH-HcCCccccCcc-------------cCCHHHH
Confidence 99999 999999999999999999999999988 9999999994 99999999876 4779999
Q ss_pred HHHHHHHHccC
Q 011339 429 VKAINILMDEG 439 (488)
Q Consensus 429 ~~ai~~~l~~~ 439 (488)
.++|.++++++
T Consensus 135 ~~~i~~l~~~~ 145 (167)
T PF04101_consen 135 AEAIEELLSDP 145 (167)
T ss_dssp HHHHHCHCCCH
T ss_pred HHHHHHHHcCc
Confidence 99999999876
No 44
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.39 E-value=3.6e-10 Score=116.85 Aligned_cols=142 Identities=16% Similarity=0.159 Sum_probs=90.4
Q ss_pred EEEEeeCCccCCChHHHHHHHHHHhcCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEEecccchhh---hhcc
Q 011339 278 VVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVL---ILSH 354 (488)
Q Consensus 278 vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~---ll~~ 354 (488)
.+++..|++.. ...+..++++++..+.-.+..+|.+. .-+.+.......++.+.+|+++.+ +++.
T Consensus 264 ~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~ivG~G~----------~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~ 331 (465)
T PLN02871 264 PLIVYVGRLGA--EKNLDFLKRVMERLPGARLAFVGDGP----------YREELEKMFAGTPTVFTGMLQGDELSQAYAS 331 (465)
T ss_pred eEEEEeCCCch--hhhHHHHHHHHHhCCCcEEEEEeCCh----------HHHHHHHHhccCCeEEeccCCHHHHHHHHHH
Confidence 34466677654 23345566777665432233445433 222333333456888999997544 7788
Q ss_pred CCcccccccC---C-chhHHHHhhcCCCEeecCcccccchhHHHHHHH---hcceEEecccCCCCCCcccccccccCHHH
Q 011339 355 PSIGGFLTHC---S-WNSSLEGISAGVPLITWPLYGDQFWNEKLIVQV---LNIGVRIGVEVPLDFGEEEEIGVLVKKED 427 (488)
Q Consensus 355 ~~~~~~Ithg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~---~G~G~~l~~~~~~~~~~~~~~~~~~~~~~ 427 (488)
+++ +|.-. | ..++.||+++|+|+|+.... .....+ +. -+.|..++.. +.++
T Consensus 332 aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv-~~~~~~~~G~lv~~~---------------d~~~ 389 (465)
T PLN02871 332 GDV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDII-PPDQEGKTGFLYTPG---------------DVDD 389 (465)
T ss_pred CCE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhh-hcCCCCCceEEeCCC---------------CHHH
Confidence 888 77433 2 34789999999999987653 233445 35 5677777653 7899
Q ss_pred HHHHHHHHHccCcchHHHHHHHHHHH
Q 011339 428 VVKAINILMDEGGETDDRRKRAREFQ 453 (488)
Q Consensus 428 l~~ai~~~l~~~~~~~~~~~~a~~l~ 453 (488)
+.++|.++++|++..+.+.+++++..
T Consensus 390 la~~i~~ll~~~~~~~~~~~~a~~~~ 415 (465)
T PLN02871 390 CVEKLETLLADPELRERMGAAAREEV 415 (465)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 99999999998855555666665543
No 45
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.34 E-value=3.5e-09 Score=105.12 Aligned_cols=329 Identities=12% Similarity=0.081 Sum_probs=171.6
Q ss_pred EEEEEcC---CC-ccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCcc
Q 011339 11 HFVLFPF---LA-QGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCEN 86 (488)
Q Consensus 11 kvl~~~~---~~-~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~ 86 (488)
||++++. |. .|+.+.+..|+++|+++||+|++++......... . .....+..++ .+ ....
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~-~-------~~~~~~~~~~-------~~-~~~~ 64 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEG-P-------ARVVPVPSVP-------LP-GYPE 64 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCCEEEEEeCCchhhccC-C-------CCceeecccc-------cC-cccc
Confidence 4666552 33 7899999999999999999999998863221100 0 0011111111 00 0000
Q ss_pred ccCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCC---cchHHHHHhcCCCcEEEecchHHHHHHHhhhcc
Q 011339 87 FDMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCY---PWTVDTAARFNIPRISFHGFSCFCLLCLYNLHT 163 (488)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~---~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~ 163 (488)
. .. . ......+...++. .+||+|++.... +.+..+++..++|++......... ...
T Consensus 65 ~------~~---~----~~~~~~~~~~~~~--~~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~----- 123 (364)
T cd03814 65 I------RL---A----LPPRRRVRRLLDA--FAPDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFPE-YLR----- 123 (364)
T ss_pred e------Ee---c----ccchhhHHHHHHh--cCCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChHH-Hhh-----
Confidence 0 00 0 0012334455566 799999876533 245677888999988754332111 100
Q ss_pred cccccccCCCCCccccCCCCCccccccccchHHHHHHH-HHhhccccceEEEcCchhhhHHHHHHHHhhcCCceEEeCCC
Q 011339 164 STVQENVTSNSDYLVVPGLPDQIEMTKVREKWKDFGEM-VLAADMKSYGIIINTFEELELEYVKECKKTKGGKVWCLGPV 242 (488)
Q Consensus 164 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~~vGpl 242 (488)
... .. ........ ........+.++..+....+ ........++..+.+.
T Consensus 124 -------------~~~---~~---------~~~~~~~~~~~~~~~~~d~i~~~s~~~~~-----~~~~~~~~~~~~~~~g 173 (364)
T cd03814 124 -------------YYG---LG---------PLSWLAWAYLRWFHNRADRVLVPSPSLAD-----ELRARGFRRVRLWPRG 173 (364)
T ss_pred -------------hcc---cc---------hHhHhhHHHHHHHHHhCCEEEeCCHHHHH-----HHhccCCCceeecCCC
Confidence 000 00 01111111 12223456666666643322 1222222444444432
Q ss_pred CCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccC-CChHHHHHHHHHHhcC-CCCeEEEEeCCCCCch
Q 011339 243 SLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICN-LTSSQMIELGLGLEAS-KKPFIWVIRGGNNTSK 320 (488)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~-~~~~~~~~~~~a~~~~-~~~~v~~~~~~~~~~~ 320 (488)
.....-. ...........+- ..++.+++..|+... ...+.+..++..+... +..+ +.++...
T Consensus 174 ~~~~~~~--------~~~~~~~~~~~~~---~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l-~i~G~~~---- 237 (364)
T cd03814 174 VDTELFH--------PRRRDEALRARLG---PPDRPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRL-VIVGDGP---- 237 (364)
T ss_pred ccccccC--------cccccHHHHHHhC---CCCCeEEEEEeccccccCHHHHHHHHHHhhhcCCceE-EEEeCCc----
Confidence 2111000 0000011111221 122356677777654 2334444444444332 2343 3444332
Q ss_pred hhhhhhhhHHHHHHhcCCCeEEecccchhh---hhccCCcccccccCC----chhHHHHhhcCCCEeecCcccccchhHH
Q 011339 321 EIQEWLLEEKFEERVKGRGILILGWAPQVL---ILSHPSIGGFLTHCS----WNSSLEGISAGVPLITWPLYGDQFWNEK 393 (488)
Q Consensus 321 ~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~---ll~~~~~~~~IthgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~ 393 (488)
..+.+. ....|+.+.+|+++.+ +++.+++ +|..+. .+++.||+++|+|+|+.+.. .+..
T Consensus 238 ------~~~~~~--~~~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~ 303 (364)
T cd03814 238 ------ARARLE--ARYPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPAD 303 (364)
T ss_pred ------hHHHHh--ccCCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCC----Cchh
Confidence 111111 2356899999988655 7888888 886654 36899999999999988754 3566
Q ss_pred HHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Q 011339 394 LIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREF 452 (488)
Q Consensus 394 rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l 452 (488)
.+ +..+.|...+. -+.+++.++|.++++|++..+.+.+++++.
T Consensus 304 ~i-~~~~~g~~~~~---------------~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 346 (364)
T cd03814 304 IV-TDGENGLLVEP---------------GDAEAFAAALAALLADPELRRRMAARARAE 346 (364)
T ss_pred hh-cCCcceEEcCC---------------CCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 67 47788887764 477889999999999885444444444443
No 46
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.32 E-value=2e-12 Score=110.54 Aligned_cols=127 Identities=17% Similarity=0.236 Sum_probs=79.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCccc-cCC
Q 011339 12 FVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENF-DML 90 (488)
Q Consensus 12 vl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~-~~~ 90 (488)
|+|++.|+.||++|+++||++|++|||+|++++++.+.+.+.+. |+.|..++.+ ...... ...
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~---------Gl~~~~~~~~-------~~~~~~~~~~ 64 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA---------GLEFVPIPGD-------SRLPRSLEPL 64 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT---------T-EEEESSSC-------GGGGHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc---------CceEEEecCC-------cCcCcccchh
Confidence 78999999999999999999999999999999999777766443 8999988632 000000 000
Q ss_pred CchhhHHHHHHHHHHhhHHHHHHHHhc------CCCCeEEEEcCCCcchHHHHHhcCCCcEEEecchHHH
Q 011339 91 HSTDLVSNFFKSLRLLQLPLENLLKEL------TPKPSCIVSDTCYPWTVDTAARFNIPRISFHGFSCFC 154 (488)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~l~~~------~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~~~~~ 154 (488)
.................+.+.+...+. ...+|+++++.....+..+|++++||++.....+.++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~~ 134 (139)
T PF03033_consen 65 ANLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWFA 134 (139)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGGS
T ss_pred hhhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcCc
Confidence 000001111111122222232222221 1367888888888889999999999999987665543
No 47
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.28 E-value=9.1e-09 Score=101.80 Aligned_cols=93 Identities=19% Similarity=0.195 Sum_probs=67.2
Q ss_pred CCCeEEecccchhh---hhccCCcccccc----cCCc-hhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEeccc
Q 011339 337 GRGILILGWAPQVL---ILSHPSIGGFLT----HCSW-NSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVE 408 (488)
Q Consensus 337 ~~nv~~~~~~pq~~---ll~~~~~~~~It----hgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~ 408 (488)
..++.+.+|+++.+ ++..+++ +|. ..|. .++.||+++|+|+|+.+. ..+...+ +..+.|...+.
T Consensus 242 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~~- 313 (359)
T cd03823 242 DPRVEFLGAYPQEEIDDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELV-RDGVNGLLFPP- 313 (359)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHh-cCCCcEEEECC-
Confidence 46888999997544 6888888 663 2344 479999999999998765 3456666 46557877765
Q ss_pred CCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHH
Q 011339 409 VPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRARE 451 (488)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~ 451 (488)
-+.+++.+++.++++|++..+.+.+++++
T Consensus 314 --------------~d~~~l~~~i~~l~~~~~~~~~~~~~~~~ 342 (359)
T cd03823 314 --------------GDAEDLAAALERLIDDPDLLERLRAGIEP 342 (359)
T ss_pred --------------CCHHHHHHHHHHHHhChHHHHHHHHhHHH
Confidence 36899999999999988544444444433
No 48
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.28 E-value=4.8e-10 Score=102.05 Aligned_cols=293 Identities=18% Similarity=0.140 Sum_probs=177.7
Q ss_pred CEEEEEcCC----CccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCc
Q 011339 10 PHFVLFPFL----AQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCE 85 (488)
Q Consensus 10 ~kvl~~~~~----~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 85 (488)
|||+|++-+ +.||+.+++.||++|.++|..++|++.+..++...+. .+ ++.+....
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~~-~~------~f~~~~~~------------- 60 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHKV-YE------GFKVLEGR------------- 60 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhhhhhhh-hh------hccceeee-------------
Confidence 789998854 7899999999999999999999999998655544331 11 12221110
Q ss_pred cccCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcch---HHHHHhcCCCcEEEecchHHHHHHHhhhc
Q 011339 86 NFDMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYPWT---VDTAARFNIPRISFHGFSCFCLLCLYNLH 162 (488)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~---~~~a~~lgiP~v~~~~~~~~~~~~~~~~~ 162 (488)
..+.+++ .++|++|.|.+...+ ..+..+.+.+.+.+-.-....
T Consensus 61 ------------------------~~n~ik~--~k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~-------- 106 (318)
T COG3980 61 ------------------------GNNLIKE--EKFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKS-------- 106 (318)
T ss_pred ------------------------ccccccc--ccCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccc--------
Confidence 0015566 799999999987644 456667888888751111000
Q ss_pred ccccccccCCCCCccccCCCCCccccccccchHHHHHHHHHhhccccceEEEcCchhhhHHHHHHHHhhcCC-ceEEeCC
Q 011339 163 TSTVQENVTSNSDYLVVPGLPDQIEMTKVREKWKDFGEMVLAADMKSYGIIINTFEELELEYVKECKKTKGG-KVWCLGP 241 (488)
Q Consensus 163 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~-~~~~vGp 241 (488)
+-. .+.......+. +... ...+. .-++.||
T Consensus 107 -------------------~~d----------~d~ivN~~~~a---------~~~y-----------~~v~~k~~~~lGp 137 (318)
T COG3980 107 -------------------FKD----------NDLIVNAILNA---------NDYY-----------GLVPNKTRYYLGP 137 (318)
T ss_pred -------------------hhh----------hHhhhhhhhcc---------hhhc-----------cccCcceEEEecC
Confidence 000 00000000000 0000 01112 2356676
Q ss_pred CCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhcCCCCeEEEEeCCCCCchh
Q 011339 242 VSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKE 321 (488)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~ 321 (488)
-+..-+...- -..++.. ++ +..-|+||+|-.- +....-.++..+...+..+-.+++... +
T Consensus 138 ~y~~lr~eF~---------~~r~~~~----~r-~~r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~~-p--- 197 (318)
T COG3980 138 GYAPLRPEFY---------ALREENT----ER-PKRDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSSN-P--- 197 (318)
T ss_pred CceeccHHHH---------HhHHHHh----hc-chheEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCCC-c---
Confidence 4333110000 0111111 11 2335999998543 233445677777777766556666433 1
Q ss_pred hhhhhhhHHHHHHh-cCCCeEEecccc-hhhhhccCCcccccccCCchhHHHHhhcCCCEeecCcccccchhHHHHHHHh
Q 011339 322 IQEWLLEEKFEERV-KGRGILILGWAP-QVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVL 399 (488)
Q Consensus 322 ~~~~~~p~~~~~~~-~~~nv~~~~~~p-q~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~ 399 (488)
-+..+...+ ..+|+....... ...|++.+++ .|+-||. |+.|++..|+|.+++|+...|--.|... +.+
T Consensus 198 -----~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f-~~l 268 (318)
T COG3980 198 -----TLKNLRKRAEKYPNINLYIDTNDMAELMKEADL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEF-EAL 268 (318)
T ss_pred -----chhHHHHHHhhCCCeeeEecchhHHHHHHhcch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHH-Hhc
Confidence 122222222 356666555544 3459999999 9999885 9999999999999999999999999999 599
Q ss_pred cceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Q 011339 400 NIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREF 452 (488)
Q Consensus 400 G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l 452 (488)
|+-..++.- +....+...+.++.+|. ..|.+.-.-
T Consensus 269 g~~~~l~~~--------------l~~~~~~~~~~~i~~d~----~~rk~l~~~ 303 (318)
T COG3980 269 GIIKQLGYH--------------LKDLAKDYEILQIQKDY----ARRKNLSFG 303 (318)
T ss_pred CchhhccCC--------------CchHHHHHHHHHhhhCH----HHhhhhhhc
Confidence 998877653 67777777888888887 666655443
No 49
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.24 E-value=1.1e-08 Score=102.11 Aligned_cols=149 Identities=18% Similarity=0.250 Sum_probs=89.3
Q ss_pred CeEEEEeeCCccC-CChHHHHHHHHHHhcC-CCCeEEEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEEecccchhh---
Q 011339 276 NSVVYVCLGSICN-LTSSQMIELGLGLEAS-KKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVL--- 350 (488)
Q Consensus 276 ~~vV~vs~Gs~~~-~~~~~~~~~~~a~~~~-~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~--- 350 (488)
++.+++..|+... ...+.+..++..+... +.++ +.++.+. ....+.+ ........|+.+.+++++.+
T Consensus 219 ~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l-~i~G~~~-~~~~~~~------~~~~~~~~~v~~~g~~~~~~~~~ 290 (394)
T cd03794 219 DKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRF-LIVGDGP-EKEELKE------LAKALGLDNVTFLGRVPKEELPE 290 (394)
T ss_pred CcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEE-EEeCCcc-cHHHHHH------HHHHcCCCcEEEeCCCChHHHHH
Confidence 3467777887765 2334444444444333 3343 3344333 1111111 11123357889889998654
Q ss_pred hhccCCcccccccCC---------chhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCCCCCCccccccc
Q 011339 351 ILSHPSIGGFLTHCS---------WNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGV 421 (488)
Q Consensus 351 ll~~~~~~~~IthgG---------~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~ 421 (488)
++..+++ +|.... -+++.||+++|+|+|+.+..+.+ ..+ ...+.|..++.
T Consensus 291 ~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~----~~~-~~~~~g~~~~~-------------- 349 (394)
T cd03794 291 LLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESA----ELV-EEAGAGLVVPP-------------- 349 (394)
T ss_pred HHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCch----hhh-ccCCcceEeCC--------------
Confidence 6778888 664322 23479999999999998875433 233 24466766654
Q ss_pred ccCHHHHHHHHHHHHccCcchHHHHHHHHHHHH
Q 011339 422 LVKKEDVVKAINILMDEGGETDDRRKRAREFQI 454 (488)
Q Consensus 422 ~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~ 454 (488)
-+.++++++|.++++|++..+.+.+++++...
T Consensus 350 -~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T cd03794 350 -GDPEALAAAILELLDDPEERAEMGENGRRYVE 381 (394)
T ss_pred -CCHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 37899999999999988655556666555444
No 50
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.21 E-value=3.8e-08 Score=96.97 Aligned_cols=328 Identities=14% Similarity=0.147 Sum_probs=170.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCccccCC
Q 011339 11 HFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFDML 90 (488)
Q Consensus 11 kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~ 90 (488)
||++++....|+......++++|.++||+|++++....... ... ..++..+.++.. .. ..
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~---~~~-----~~~~~~~~~~~~-------~~--~~--- 60 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE---ELE-----ALGVKVIPIPLD-------RR--GI--- 60 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCccc---ccc-----cCCceEEecccc-------cc--cc---
Confidence 58888887888999999999999999999999988744332 111 125666555421 00 00
Q ss_pred CchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCc--chHHHHHhcCCCcEEEecchHHHHHHHhhhccccccc
Q 011339 91 HSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYP--WTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSTVQE 168 (488)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~--~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 168 (488)
.....+. ....+..+++. .+||+|++..... .+..+++..+.|.+.+.........
T Consensus 61 ---~~~~~~~-----~~~~~~~~~~~--~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------ 118 (359)
T cd03808 61 ---NPFKDLK-----ALLRLYRLLRK--ERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVF------------ 118 (359)
T ss_pred ---ChHhHHH-----HHHHHHHHHHh--cCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhh------------
Confidence 0011111 12345566677 7999999876433 3344455466666554322111100
Q ss_pred ccCCCCCccccCCCCCccccccccchHHHHHHHH-HhhccccceEEEcCchhhhHHHHHHHHhhc----CCceEEeCCCC
Q 011339 169 NVTSNSDYLVVPGLPDQIEMTKVREKWKDFGEMV-LAADMKSYGIIINTFEELELEYVKECKKTK----GGKVWCLGPVS 243 (488)
Q Consensus 169 ~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~s~~~le~~~~~~~~~~~----~~~~~~vGpl~ 243 (488)
.... .....+..+ .......+.++..+-...+ .+.... ...+..++..
T Consensus 119 ---------~~~~------------~~~~~~~~~~~~~~~~~d~ii~~s~~~~~-----~~~~~~~~~~~~~~~~~~~~- 171 (359)
T cd03808 119 ---------TSGG------------LKRRLYLLLERLALRFTDKVIFQNEDDRD-----LALKLGIIKKKKTVLIPGSG- 171 (359)
T ss_pred ---------ccch------------hHHHHHHHHHHHHHhhccEEEEcCHHHHH-----HHHHhcCCCcCceEEecCCC-
Confidence 0000 011111111 1223445667766633222 222221 1233333322
Q ss_pred CCCCCcchhhhhCCCCcccchhhhcccCC-CCCCeEEEEeeCCccC-CChHHHHHHHHHHhcCCCCe-EEEEeCCCCCch
Q 011339 244 LCNKQDIDKAERGKKAAVDISECLNWLDS-WPPNSVVYVCLGSICN-LTSSQMIELGLGLEASKKPF-IWVIRGGNNTSK 320 (488)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~vV~vs~Gs~~~-~~~~~~~~~~~a~~~~~~~~-v~~~~~~~~~~~ 320 (488)
.+... ...... ..+++.+++..|+... ...+.+...+..+...+..+ ++.++... ...
T Consensus 172 ~~~~~------------------~~~~~~~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~-~~~ 232 (359)
T cd03808 172 VDLDR------------------FSPSPEPIPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGD-EEN 232 (359)
T ss_pred CChhh------------------cCccccccCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCC-cch
Confidence 11100 000000 1234467788887765 23344444444444322333 33333332 111
Q ss_pred hhhhhhhhHHHHHHhcCCCeEEecccch-hhhhccCCcccccccCC----chhHHHHhhcCCCEeecCcccccchhHHHH
Q 011339 321 EIQEWLLEEKFEERVKGRGILILGWAPQ-VLILSHPSIGGFLTHCS----WNSSLEGISAGVPLITWPLYGDQFWNEKLI 395 (488)
Q Consensus 321 ~~~~~~~p~~~~~~~~~~nv~~~~~~pq-~~ll~~~~~~~~IthgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv 395 (488)
.... ..........++.+.++..+ ..++..+++ +|.-.. .+++.||+.+|+|+|+.+.. .+...+
T Consensus 233 ~~~~----~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i 302 (359)
T cd03808 233 PAAI----LEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAV 302 (359)
T ss_pred hhHH----HHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----Cchhhh
Confidence 1000 00111112457777776543 558888888 665432 46899999999999986553 345566
Q ss_pred HHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Q 011339 396 VQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREF 452 (488)
Q Consensus 396 ~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l 452 (488)
+..+.|...+. -+.+++.++|.+++.|++..+.+.+++++.
T Consensus 303 -~~~~~g~~~~~---------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 343 (359)
T cd03808 303 -IDGVNGFLVPP---------------GDAEALADAIERLIEDPELRARMGQAARKR 343 (359)
T ss_pred -hcCcceEEECC---------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 46677877754 378999999999999884444444444443
No 51
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.21 E-value=4.2e-08 Score=98.19 Aligned_cols=351 Identities=13% Similarity=0.096 Sum_probs=174.9
Q ss_pred CEEEEEcCC-CccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCcccc
Q 011339 10 PHFVLFPFL-AQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFD 88 (488)
Q Consensus 10 ~kvl~~~~~-~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~ 88 (488)
|||++++.| ..|.-.-...+|+.|.++||+|++++....... ... ..++.+..++.+. .+. ..
T Consensus 1 mki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~-~~~-------~~~~~~~~~~~~~----~~~----~~ 64 (371)
T cd04962 1 MKIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSRPFRL-DEY-------SPNIFFHEVEVPQ----YPL----FQ 64 (371)
T ss_pred CceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCCCcch-hhh-------ccCeEEEEecccc----cch----hh
Confidence 688888875 555666688999999999999999987532111 010 1244444333110 000 00
Q ss_pred CCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCc--chHHHHHh-c---CCCcEEEecchHHHHHHHhhhc
Q 011339 89 MLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYP--WTVDTAAR-F---NIPRISFHGFSCFCLLCLYNLH 162 (488)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~--~~~~~a~~-l---giP~v~~~~~~~~~~~~~~~~~ 162 (488)
.. . ........+.++++. .+||+|.+-...+ ....++.. . ++|++.........
T Consensus 65 -~~--~-------~~~~~~~~l~~~i~~--~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~-------- 124 (371)
T cd04962 65 -YP--P-------YDLALASKIAEVAKR--YKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDIT-------- 124 (371)
T ss_pred -cc--h-------hHHHHHHHHHHHHhc--CCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCccc--------
Confidence 00 0 001224566677777 7999998754322 22333332 2 78877642221000
Q ss_pred ccccccccCCCCCccccCCCCCccccccccchHHHHHHHHHhhccccceEEEcCchhhhHHHHHHHHhhc--CCceEEeC
Q 011339 163 TSTVQENVTSNSDYLVVPGLPDQIEMTKVREKWKDFGEMVLAADMKSYGIIINTFEELELEYVKECKKTK--GGKVWCLG 240 (488)
Q Consensus 163 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~--~~~~~~vG 240 (488)
..+... .+... ........+.++..+-... +.+.+.. ..++..|.
T Consensus 125 ----------------~~~~~~---------~~~~~---~~~~~~~~d~ii~~s~~~~-----~~~~~~~~~~~~i~vi~ 171 (371)
T cd04962 125 ----------------LVGQDP---------SFQPA---TRFSIEKSDGVTAVSESLR-----QETYELFDITKEIEVIP 171 (371)
T ss_pred ----------------cccccc---------cchHH---HHHHHhhCCEEEEcCHHHH-----HHHHHhcCCcCCEEEec
Confidence 000000 01111 1122345666666553321 1122221 24555665
Q ss_pred CCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccC-CChHHHHHHHHHHh-cCCCCeEEEEeCCCCC
Q 011339 241 PVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICN-LTSSQMIELGLGLE-ASKKPFIWVIRGGNNT 318 (488)
Q Consensus 241 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~-~~~~~~~~~~~a~~-~~~~~~v~~~~~~~~~ 318 (488)
......... ...+....+.....+++ .+++..|.... ...+.+...+..+. ..+.++++. +.+. +
T Consensus 172 n~~~~~~~~----------~~~~~~~~~~~~~~~~~-~~il~~g~l~~~K~~~~li~a~~~l~~~~~~~l~i~-G~g~-~ 238 (371)
T cd04962 172 NFVDEDRFR----------PKPDEALKRRLGAPEGE-KVLIHISNFRPVKRIDDVIRIFAKVRKEVPARLLLV-GDGP-E 238 (371)
T ss_pred CCcCHhhcC----------CCchHHHHHhcCCCCCC-eEEEEecccccccCHHHHHHHHHHHHhcCCceEEEE-cCCc-C
Confidence 432211000 00111222222222223 45667777665 22333333333332 234555444 3332 2
Q ss_pred chhhhhhhhhHHHHHHh-cCCCeEEecccch-hhhhccCCcccccc---cCC-chhHHHHhhcCCCEeecCcccccchhH
Q 011339 319 SKEIQEWLLEEKFEERV-KGRGILILGWAPQ-VLILSHPSIGGFLT---HCS-WNSSLEGISAGVPLITWPLYGDQFWNE 392 (488)
Q Consensus 319 ~~~~~~~~~p~~~~~~~-~~~nv~~~~~~pq-~~ll~~~~~~~~It---hgG-~gs~~eal~~GvP~v~~P~~~DQ~~na 392 (488)
...+.+ ..... ...++.+.++.++ ..++..+++ +|. ..| -.++.||+++|+|+|+... ...+
T Consensus 239 ~~~~~~------~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~ 306 (371)
T cd04962 239 RSPAER------LARELGLQDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIP 306 (371)
T ss_pred HHHHHH------HHHHcCCCceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCch
Confidence 222111 11111 1356888888765 558888888 652 223 3599999999999998654 3455
Q ss_pred HHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Q 011339 393 KLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETRSSSLMIKL 472 (488)
Q Consensus 393 ~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~ 472 (488)
..+ +.-..|...+. -+.+++.++|.++++|++..+.+++++++.. .+.-+....+++
T Consensus 307 e~i-~~~~~G~~~~~---------------~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~-------~~~fs~~~~~~~ 363 (371)
T cd04962 307 EVV-KHGETGFLVDV---------------GDVEAMAEYALSLLEDDELWQEFSRAARNRA-------AERFDSERIVPQ 363 (371)
T ss_pred hhh-cCCCceEEcCC---------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-------HHhCCHHHHHHH
Confidence 556 35456766654 3789999999999998754445555555542 123344445555
Q ss_pred HHHHH
Q 011339 473 LIQDI 477 (488)
Q Consensus 473 ~i~~~ 477 (488)
+.+..
T Consensus 364 ~~~~y 368 (371)
T cd04962 364 YEALY 368 (371)
T ss_pred HHHHH
Confidence 55443
No 52
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.20 E-value=1.9e-08 Score=101.52 Aligned_cols=94 Identities=11% Similarity=0.128 Sum_probs=68.8
Q ss_pred CCCeEEecccchhh---hhccCCcccccccC---C-chhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccC
Q 011339 337 GRGILILGWAPQVL---ILSHPSIGGFLTHC---S-WNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEV 409 (488)
Q Consensus 337 ~~nv~~~~~~pq~~---ll~~~~~~~~Ithg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~ 409 (488)
..|+.+.+|+|+.+ ++..+++ +|... | ..++.||+++|+|+|+.... .....+ +..+.|..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i-~~~~~g~~~~~-- 352 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIV-VDGVTGLLVDP-- 352 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHc-cCCCCeEEeCC--
Confidence 46889999999765 5788888 77432 2 35899999999999987653 355567 47778887764
Q ss_pred CCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Q 011339 410 PLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREF 452 (488)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l 452 (488)
-+.+++.++|.++++|++..+.+.+++++.
T Consensus 353 -------------~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~ 382 (398)
T cd03800 353 -------------RDPEALAAALRRLLTDPALRRRLSRAGLRR 382 (398)
T ss_pred -------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 479999999999999874444455555443
No 53
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.17 E-value=1.3e-07 Score=96.36 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=75.0
Q ss_pred CCeEEecccchhh---hhccCCcccccccCCc------hhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEeccc
Q 011339 338 RGILILGWAPQVL---ILSHPSIGGFLTHCSW------NSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVE 408 (488)
Q Consensus 338 ~nv~~~~~~pq~~---ll~~~~~~~~IthgG~------gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~ 408 (488)
.|+.+.+|+|+.+ +++.+++-++.+.-+. +.+.|++++|+|+|+....+. .....+ + +.|..++.
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i-~--~~G~~~~~- 357 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLV-E--GIGVCVEP- 357 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHH-h--CCcEEeCC-
Confidence 4788899998654 6888888444444332 246899999999999875431 122334 3 67887765
Q ss_pred CCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 011339 409 VPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETRSSSLMIKLLIQDIM 478 (488)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~ 478 (488)
-+.++++++|.++++|++..+.+.+++++..+. --+....++.+++.+.
T Consensus 358 --------------~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~-------~fs~~~~~~~~~~~~~ 406 (412)
T PRK10307 358 --------------ESVEALVAAIAALARQALLRPKLGTVAREYAER-------TLDKENVLRQFIADIR 406 (412)
T ss_pred --------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-------HcCHHHHHHHHHHHHH
Confidence 378999999999998875555566666554332 3344455555555544
No 54
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.17 E-value=6.3e-08 Score=98.09 Aligned_cols=93 Identities=18% Similarity=0.199 Sum_probs=66.0
Q ss_pred CCCeEEecccchhh---hhccCCccccc--c-cCCc-hhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccC
Q 011339 337 GRGILILGWAPQVL---ILSHPSIGGFL--T-HCSW-NSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEV 409 (488)
Q Consensus 337 ~~nv~~~~~~pq~~---ll~~~~~~~~I--t-hgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~ 409 (488)
..+|.+.+++|+.+ ++..+++ +| + +.|. .++.||+++|+|+|+... ......+ +.-..|..++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i-~~~~~G~lv~~-- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVI-TDGENGLLVDF-- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhc-ccCCceEEcCC--
Confidence 46899999998755 5678887 55 2 2333 489999999999998654 4455556 35455766654
Q ss_pred CCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHH
Q 011339 410 PLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRARE 451 (488)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~ 451 (488)
-+++++.++|.++++|++..+.+.+++++
T Consensus 351 -------------~d~~~la~~i~~ll~~~~~~~~l~~~ar~ 379 (396)
T cd03818 351 -------------FDPDALAAAVIELLDDPARRARLRRAARR 379 (396)
T ss_pred -------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 47999999999999987544445555544
No 55
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.16 E-value=1.2e-07 Score=93.45 Aligned_cols=331 Identities=17% Similarity=0.118 Sum_probs=171.0
Q ss_pred EEEEEcCC---C-ccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCcc
Q 011339 11 HFVLFPFL---A-QGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCEN 86 (488)
Q Consensus 11 kvl~~~~~---~-~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~ 86 (488)
||++++.. . .|+...+..+++.|.+.||+|++++........ ....... .....
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~-------------~~~~~~~-------~~~~~-- 58 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPD-------------EEEVGGI-------VVVRP-- 58 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCc-------------eeeecCc-------ceecC--
Confidence 45555542 2 688999999999999999999999886332211 0000000 00000
Q ss_pred ccCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcchH--HHHHhcCCCcEEEecchHHHHHHHhhhccc
Q 011339 87 FDMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYPWTV--DTAARFNIPRISFHGFSCFCLLCLYNLHTS 164 (488)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~--~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~ 164 (488)
.. ... .............+..+++. .+||+|++........ ..+...++|++...........
T Consensus 59 ~~-~~~----~~~~~~~~~~~~~~~~~~~~--~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~-------- 123 (374)
T cd03801 59 PP-LLR----VRRLLLLLLLALRLRRLLRR--ERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRP-------- 123 (374)
T ss_pred Cc-ccc----cchhHHHHHHHHHHHHHhhh--cCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhcc--------
Confidence 00 000 00011111223455666767 7999999887654333 4788889998875433221100
Q ss_pred ccccccCCCCCccccCCCCCccccccccchHHHHHHHHHhhccccceEEEcCchhhhHHHHHHHHhhcC---CceEEeCC
Q 011339 165 TVQENVTSNSDYLVVPGLPDQIEMTKVREKWKDFGEMVLAADMKSYGIIINTFEELELEYVKECKKTKG---GKVWCLGP 241 (488)
Q Consensus 165 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~---~~~~~vGp 241 (488)
... .. . ................+.++..+.... +.+....+ .++..+.+
T Consensus 124 ------------~~~---~~-~-------~~~~~~~~~~~~~~~~d~~i~~s~~~~-----~~~~~~~~~~~~~~~~i~~ 175 (374)
T cd03801 124 ------------GNE---LG-L-------LLKLARALERRALRRADRIIAVSEATR-----EELRELGGVPPEKITVIPN 175 (374)
T ss_pred ------------ccc---hh-H-------HHHHHHHHHHHHHHhCCEEEEecHHHH-----HHHHhcCCCCCCcEEEecC
Confidence 000 00 0 011111122233456677776663322 23333333 25666654
Q ss_pred CCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccC-CChHHHHHHHHHHhcCCCCeE-EEEeCCCCCc
Q 011339 242 VSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICN-LTSSQMIELGLGLEASKKPFI-WVIRGGNNTS 319 (488)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~-~~~~~~~~~~~a~~~~~~~~v-~~~~~~~~~~ 319 (488)
........ ............ ..+..+++.+|+... ...+.+...+..+......+- +.++...
T Consensus 176 ~~~~~~~~-----------~~~~~~~~~~~~-~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~--- 240 (374)
T cd03801 176 GVDTERFR-----------PAPRAARRRLGI-PEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVGDGP--- 240 (374)
T ss_pred cccccccC-----------ccchHHHhhcCC-cCCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCcH---
Confidence 32211100 000000111111 123356677777654 222233233333333222333 3334322
Q ss_pred hhhhhhhhhHHHHH----HhcCCCeEEecccchh---hhhccCCcccccc----cCCchhHHHHhhcCCCEeecCccccc
Q 011339 320 KEIQEWLLEEKFEE----RVKGRGILILGWAPQV---LILSHPSIGGFLT----HCSWNSSLEGISAGVPLITWPLYGDQ 388 (488)
Q Consensus 320 ~~~~~~~~p~~~~~----~~~~~nv~~~~~~pq~---~ll~~~~~~~~It----hgG~gs~~eal~~GvP~v~~P~~~DQ 388 (488)
....+.. .....++.+.+++++. .++..+++ +|. -|..+++.||+++|+|+|+.+.
T Consensus 241 -------~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~---- 307 (374)
T cd03801 241 -------LREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV---- 307 (374)
T ss_pred -------HHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----
Confidence 1112211 1235688899999743 47788888 663 2445799999999999998776
Q ss_pred chhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHH
Q 011339 389 FWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAR 450 (488)
Q Consensus 389 ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~ 450 (488)
......+ +..+.|...+. .+++++.++|.++++|++..+.+.++++
T Consensus 308 ~~~~~~~-~~~~~g~~~~~---------------~~~~~l~~~i~~~~~~~~~~~~~~~~~~ 353 (374)
T cd03801 308 GGIPEVV-EDGETGLLVPP---------------GDPEALAEAILRLLDDPELRRRLGEAAR 353 (374)
T ss_pred CChhHHh-cCCcceEEeCC---------------CCHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 4466667 46777877764 4689999999999998743333433433
No 56
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.14 E-value=7.9e-08 Score=98.30 Aligned_cols=85 Identities=18% Similarity=0.172 Sum_probs=62.4
Q ss_pred hhhhccCCccccccc-----CCchhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCCCCCCccccccccc
Q 011339 349 VLILSHPSIGGFLTH-----CSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLV 423 (488)
Q Consensus 349 ~~ll~~~~~~~~Ith-----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~ 423 (488)
..+++.+++ ++.. +|..++.||+++|+|+|+-|..+++......+ ++.|+++.. -
T Consensus 314 ~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~-~~~g~~~~~-----------------~ 373 (425)
T PRK05749 314 GLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERL-LQAGAAIQV-----------------E 373 (425)
T ss_pred HHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHH-HHCCCeEEE-----------------C
Confidence 457788887 4331 33346999999999999999988888877777 467766543 3
Q ss_pred CHHHHHHHHHHHHccCcchHHHHHHHHHHH
Q 011339 424 KKEDVVKAINILMDEGGETDDRRKRAREFQ 453 (488)
Q Consensus 424 ~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~ 453 (488)
++++|.++|.++++|++..+.+.+++++..
T Consensus 374 d~~~La~~l~~ll~~~~~~~~m~~~a~~~~ 403 (425)
T PRK05749 374 DAEDLAKAVTYLLTDPDARQAYGEAGVAFL 403 (425)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 678999999999998855555555555443
No 57
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.12 E-value=1.2e-07 Score=94.20 Aligned_cols=96 Identities=16% Similarity=0.160 Sum_probs=69.8
Q ss_pred CCCeEEecccchhh---hhccCCccccccc----CCchhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccC
Q 011339 337 GRGILILGWAPQVL---ILSHPSIGGFLTH----CSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEV 409 (488)
Q Consensus 337 ~~nv~~~~~~pq~~---ll~~~~~~~~Ith----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~ 409 (488)
..|+.+.+++|+.+ ++..+++ +|.- +...++.||+++|+|+|+... ...+..+ +..+.|..++..
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i-~~~~~g~~~~~~- 329 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLV-ADGENGFLFPPG- 329 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhhe-ecCceeEEeCCC-
Confidence 46889999998754 6788888 6633 334689999999999998654 4455666 466778888654
Q ss_pred CCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHH
Q 011339 410 PLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIM 455 (488)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~ 455 (488)
+. ++.+++.++++|++..+.+.+++++..+.
T Consensus 330 --------------~~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 360 (374)
T cd03817 330 --------------DE-ALAEALLRLLQDPELRRRLSKNAEESAEK 360 (374)
T ss_pred --------------CH-HHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 22 89999999999885555566666655554
No 58
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.11 E-value=2.2e-07 Score=94.64 Aligned_cols=357 Identities=12% Similarity=0.033 Sum_probs=173.6
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCccc
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENF 87 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~ 87 (488)
++.+|++++....|+-..+..+|+.|+++||+|++++....... .... ...++.++.++.. .. ..
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~-~~~~-----~~~~v~~~~~~~~-------~~--~~ 66 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPH-DEIL-----SNPNITIHPLPPP-------PQ--RL 66 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCC-HHHh-----cCCCEEEEECCCC-------cc--cc
Confidence 56778888888899989999999999999999999987532111 1100 1236777766421 10 00
Q ss_pred cCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcC-CCc----chHHHHHhcCCCcEEEecchHHHHHHHhhhc
Q 011339 88 DMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDT-CYP----WTVDTAARFNIPRISFHGFSCFCLLCLYNLH 162 (488)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~-~~~----~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~ 162 (488)
. .....+..+..........+..+++. .+||+|++.. ..+ .+..++...++|+|..+........
T Consensus 67 ~--~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~~~------ 136 (415)
T cd03816 67 N--KLPFLLFAPLKVLWQFFSLLWLLYKL--RPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYTIL------ 136 (415)
T ss_pred c--cchHHHHHHHHHHHHHHHHHHHHHhc--CCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHHHH------
Confidence 0 00111112222222233333445555 6899999753 221 2444566779998764332111100
Q ss_pred ccccccccCCCCCccccCCCCCccccccccchHHHHHHHHHhhc-cccceEEEcCchhhhHHHHHHHHhhcCCceEEeCC
Q 011339 163 TSTVQENVTSNSDYLVVPGLPDQIEMTKVREKWKDFGEMVLAAD-MKSYGIIINTFEELELEYVKECKKTKGGKVWCLGP 241 (488)
Q Consensus 163 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~~vGp 241 (488)
..... .. +.+..++..+.... +.++.++..|-.. ...... .. ....++..|..
T Consensus 137 -------------~~~~~--~~--------~~~~~~~~~~e~~~~~~ad~ii~vS~~~-~~~l~~-~~-~~~~ki~vI~N 190 (415)
T cd03816 137 -------------ALKLG--EN--------HPLVRLAKWYEKLFGRLADYNLCVTKAM-KEDLQQ-FN-NWKIRATVLYD 190 (415)
T ss_pred -------------hcccC--CC--------CHHHHHHHHHHHHHhhcCCEeeecCHHH-HHHHHh-hh-ccCCCeeecCC
Confidence 00000 00 01122222333322 4466666666332 211111 11 11234443322
Q ss_pred CCCCCCCcchhhhhCCCCcccchhhh----------ccc---CCCCCCeEEEEeeCCccC-CChHHHHHHHHHHhcC---
Q 011339 242 VSLCNKQDIDKAERGKKAAVDISECL----------NWL---DSWPPNSVVYVCLGSICN-LTSSQMIELGLGLEAS--- 304 (488)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~l---~~~~~~~vV~vs~Gs~~~-~~~~~~~~~~~a~~~~--- 304 (488)
.....-.+... ........ .+. ...++++.++++.|.+.. ...+.+...+..++..
T Consensus 191 g~~~~f~p~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~ 263 (415)
T cd03816 191 RPPEQFRPLPL-------EEKHELFLKLAKTFLTRELRIGAVQLSEERPALLVSSTSWTPDEDFGILLDALVAYEKSAAT 263 (415)
T ss_pred CCHHHceeCcH-------HHHHHHHHhccccccccccccccceecCCCceEEEEeccccCCCCHHHHHHHHHHHHHhhcc
Confidence 10000000000 00000000 000 011234456666777655 2333333333333321
Q ss_pred ---CCCeE-EEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEEe-cccchhh---hhccCCcccccc----c-C-C-chhH
Q 011339 305 ---KKPFI-WVIRGGNNTSKEIQEWLLEEKFEERVKGRGILIL-GWAPQVL---ILSHPSIGGFLT----H-C-S-WNSS 369 (488)
Q Consensus 305 ---~~~~v-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~-~~~pq~~---ll~~~~~~~~It----h-g-G-~gs~ 369 (488)
..++. +.+|.+. ....+.+ ......-.|+++. .|+|..+ +|..+++ +|. . | | -+++
T Consensus 264 ~~~~~~i~l~ivG~G~-~~~~l~~------~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~ 334 (415)
T cd03816 264 GPKLPKLLCIITGKGP-LKEKYLE------RIKELKLKKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKV 334 (415)
T ss_pred cccCCCEEEEEEecCc-cHHHHHH------HHHHcCCCcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHH
Confidence 11233 3445443 2222221 1112222456554 5887544 6778888 662 1 1 2 3479
Q ss_pred HHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHcc---CcchHHHH
Q 011339 370 LEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDE---GGETDDRR 446 (488)
Q Consensus 370 ~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~---~~~~~~~~ 446 (488)
.||+++|+|+|+... ......+ ++-+.|..+ . +.++|+++|.++++| ++..+.+.
T Consensus 335 ~Eama~G~PVI~s~~----~~~~eiv-~~~~~G~lv--~---------------d~~~la~~i~~ll~~~~~~~~~~~m~ 392 (415)
T cd03816 335 VDMFGCGLPVCALDF----KCIDELV-KHGENGLVF--G---------------DSEELAEQLIDLLSNFPNRGKLNSLK 392 (415)
T ss_pred HHHHHcCCCEEEeCC----CCHHHHh-cCCCCEEEE--C---------------CHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 999999999998654 3455566 566678765 2 578999999999998 65555566
Q ss_pred HHHHHHH
Q 011339 447 KRAREFQ 453 (488)
Q Consensus 447 ~~a~~l~ 453 (488)
+++++..
T Consensus 393 ~~~~~~~ 399 (415)
T cd03816 393 KGAQEES 399 (415)
T ss_pred HHHHHhh
Confidence 6665544
No 59
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.03 E-value=2.6e-07 Score=90.56 Aligned_cols=96 Identities=20% Similarity=0.223 Sum_probs=65.4
Q ss_pred CCCeEEecccc-hhhhhccCCcccccccC---C-chhHHHHhhcCCCEeecCcccccchhHHHHHHHhc-ceEEecccCC
Q 011339 337 GRGILILGWAP-QVLILSHPSIGGFLTHC---S-WNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLN-IGVRIGVEVP 410 (488)
Q Consensus 337 ~~nv~~~~~~p-q~~ll~~~~~~~~Ithg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G-~G~~l~~~~~ 410 (488)
..++.+.++.. -..++..+++ +|.-. | -+++.||+++|+|+|+.+..+.+ ..+. ..| .|...+.
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~-~~~~~g~~~~~--- 303 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEII-EDGVNGLLVPN--- 303 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhh-ccCcceEEeCC---
Confidence 45677777633 3568888888 66543 2 46899999999999987654332 2332 444 6777754
Q ss_pred CCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHH
Q 011339 411 LDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQI 454 (488)
Q Consensus 411 ~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~ 454 (488)
.+.+++.++|.++++|++..+.+.++++++.+
T Consensus 304 ------------~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~ 335 (348)
T cd03820 304 ------------GDVEALAEALLRLMEDEELRKRMGANARESAE 335 (348)
T ss_pred ------------CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 47899999999999998555555555544433
No 60
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.03 E-value=1.5e-06 Score=85.86 Aligned_cols=318 Identities=19% Similarity=0.118 Sum_probs=163.0
Q ss_pred CccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCccccCCCchhhHHH
Q 011339 19 AQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFDMLHSTDLVSN 98 (488)
Q Consensus 19 ~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~ 98 (488)
..|+..-+..+++.|.+.||+|++++............. ....... ......... ....
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~-------~~~~~~~-------~~~~~~~~~---~~~~---- 71 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLK-------GRLVGVE-------RLPVLLPVV---PLLK---- 71 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcc-------ccccccc-------ccccCcchh---hccc----
Confidence 478888899999999999999999988643222111100 0000000 000000000 0000
Q ss_pred HHHHHHHhhHHHHHHHH--hcCCCCeEEEEcCCCc---chHHHHHhcCCCcEEEecchHHHHHHHhhhcccccccccCCC
Q 011339 99 FFKSLRLLQLPLENLLK--ELTPKPSCIVSDTCYP---WTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSTVQENVTSN 173 (488)
Q Consensus 99 ~~~~~~~~~~~l~~~l~--~~~~~pD~vv~D~~~~---~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (488)
...........+...++ . .+||+|++....+ .+..++...++|++.........
T Consensus 72 ~~~~~~~~~~~~~~~l~~~~--~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~------------------- 130 (377)
T cd03798 72 GPLLYLLAARALLKLLKLKR--FRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVN------------------- 130 (377)
T ss_pred cchhHHHHHHHHHHHHhccc--CCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhc-------------------
Confidence 00111223445566666 5 7999999885443 34456667778987653321111
Q ss_pred CCccccCCCCCccccccccchHHHHHHHHHhhccccceEEEcCchhhhHHHHHHHHhh--cCCceEEeCCCCCCCCCcch
Q 011339 174 SDYLVVPGLPDQIEMTKVREKWKDFGEMVLAADMKSYGIIINTFEELELEYVKECKKT--KGGKVWCLGPVSLCNKQDID 251 (488)
Q Consensus 174 ~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~--~~~~~~~vGpl~~~~~~~~~ 251 (488)
.... ...............+.++..+-... +.+.+. ...++..++..........
T Consensus 131 -------~~~~----------~~~~~~~~~~~~~~~d~ii~~s~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~- 187 (377)
T cd03798 131 -------LLPR----------KRLLRALLRRALRRADAVIAVSEALA-----DELKALGIDPEKVTVIPNGVDTERFSP- 187 (377)
T ss_pred -------ccCc----------hhhHHHHHHHHHhcCCeEEeCCHHHH-----HHHHHhcCCCCceEEcCCCcCcccCCC-
Confidence 0000 00011112233456677777663322 222222 2356666665432211000
Q ss_pred hhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccC-CChHHHHHHHHHHhcCCCCeEEEEeCCCCCchhhhhhhhhHH
Q 011339 252 KAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICN-LTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEK 330 (488)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~-~~~~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~ 330 (488)
. ..... ..+.. ..+..+++..|+... ...+.+..++..+...+..+.+.+.+....... +-..
T Consensus 188 --------~-~~~~~-~~~~~-~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~~~-----~~~~ 251 (377)
T cd03798 188 --------A-DRAEA-RKLGL-PEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPLREA-----LEAL 251 (377)
T ss_pred --------c-chHHH-HhccC-CCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcchHH-----HHHH
Confidence 0 00000 11111 123356677787665 223333344444443333455544444301111 1111
Q ss_pred HHHHhcCCCeEEecccchh---hhhccCCcccccc----cCCchhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceE
Q 011339 331 FEERVKGRGILILGWAPQV---LILSHPSIGGFLT----HCSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGV 403 (488)
Q Consensus 331 ~~~~~~~~nv~~~~~~pq~---~ll~~~~~~~~It----hgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~ 403 (488)
........|+.+.+++++. .++..+++ +|. -|..+++.||+++|+|+|+-+. ......+ +..+.|.
T Consensus 252 ~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~----~~~~~~~-~~~~~g~ 324 (377)
T cd03798 252 AAELGLEDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDV----GGIPEII-TDGENGL 324 (377)
T ss_pred HHhcCCcceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecC----CChHHHh-cCCccee
Confidence 1111125688999999864 46778888 552 2445789999999999998655 3455566 4666677
Q ss_pred EecccCCCCCCcccccccccCHHHHHHHHHHHHccC
Q 011339 404 RIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEG 439 (488)
Q Consensus 404 ~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~ 439 (488)
..+. -+.+++.++|.++++|+
T Consensus 325 ~~~~---------------~~~~~l~~~i~~~~~~~ 345 (377)
T cd03798 325 LVPP---------------GDPEALAEAILRLLADP 345 (377)
T ss_pred EECC---------------CCHHHHHHHHHHHhcCc
Confidence 7754 48999999999999987
No 61
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.02 E-value=8e-07 Score=88.15 Aligned_cols=150 Identities=17% Similarity=0.114 Sum_probs=89.9
Q ss_pred EEEEeeCCccCCChHHHHHHHHHHhcCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEEecccchh---hhhcc
Q 011339 278 VVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQV---LILSH 354 (488)
Q Consensus 278 vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~---~ll~~ 354 (488)
.+++..|+.... .....++++++... ++-+.+.+....... +..-........||.+.+|+|+. .+++.
T Consensus 192 ~~i~~~G~~~~~--K~~~~li~a~~~l~-~~~l~i~G~g~~~~~-----~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ 263 (357)
T cd03795 192 PFFLFVGRLVYY--KGLDVLLEAAAALP-DAPLVIVGEGPLEAE-----LEALAAALGLLDRVRFLGRLDDEEKAALLAA 263 (357)
T ss_pred cEEEEecccccc--cCHHHHHHHHHhcc-CcEEEEEeCChhHHH-----HHHHHHhcCCcceEEEcCCCCHHHHHHHHHh
Confidence 456777776542 23444566666555 333333333201111 11111111235689999999975 47777
Q ss_pred CCcccccc---cCCc-hhHHHHhhcCCCEeecCcccccchhHHHHHHH-hcceEEecccCCCCCCcccccccccCHHHHH
Q 011339 355 PSIGGFLT---HCSW-NSSLEGISAGVPLITWPLYGDQFWNEKLIVQV-LNIGVRIGVEVPLDFGEEEEIGVLVKKEDVV 429 (488)
Q Consensus 355 ~~~~~~It---hgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~-~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~ 429 (488)
+++-++.+ +.|. .++.||+++|+|+|+....+ ....+ +. -+.|...+. -+.++++
T Consensus 264 ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~----~~~~i-~~~~~~g~~~~~---------------~d~~~~~ 323 (357)
T cd03795 264 CDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGT----GGSYV-NLHGVTGLVVPP---------------GDPAALA 323 (357)
T ss_pred CCEEEeCCcccccccchHHHHHHHcCCCEEecCCCC----chhHH-hhCCCceEEeCC---------------CCHHHHH
Confidence 88833333 2344 47999999999999865543 33344 23 456766654 4899999
Q ss_pred HHHHHHHccCcchHHHHHHHHHHHHH
Q 011339 430 KAINILMDEGGETDDRRKRAREFQIM 455 (488)
Q Consensus 430 ~ai~~~l~~~~~~~~~~~~a~~l~~~ 455 (488)
++|.++++|++..+.+.+++++..+.
T Consensus 324 ~~i~~l~~~~~~~~~~~~~~~~~~~~ 349 (357)
T cd03795 324 EAIRRLLEDPELRERLGEAARERAEE 349 (357)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 99999999986666666666655433
No 62
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.01 E-value=4.4e-07 Score=90.35 Aligned_cols=112 Identities=20% Similarity=0.243 Sum_probs=72.5
Q ss_pred CCCeEEecccc-hh---hhhccCCcccccccC----CchhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEeccc
Q 011339 337 GRGILILGWAP-QV---LILSHPSIGGFLTHC----SWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVE 408 (488)
Q Consensus 337 ~~nv~~~~~~p-q~---~ll~~~~~~~~Ithg----G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~ 408 (488)
..++...+|++ +. .+++.+++ +|.-. ..+++.||+++|+|+|+.... .....+ +..+.|..++.
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~-~~~~~g~~~~~- 314 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIV-DHGVTGYLAKP- 314 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhhe-eCCCceEEeCC-
Confidence 45788889988 43 46888888 77643 247999999999999986542 333444 34445665543
Q ss_pred CCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 011339 409 VPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETRSSSLMIKLLIQDI 477 (488)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~ 477 (488)
.+.+++.+++.++++|++..+.+.+++++.. ++.-|.....+++++..
T Consensus 315 --------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-------~~~~s~~~~~~~~~~~y 362 (365)
T cd03825 315 --------------GDPEDLAEGIEWLLADPDEREELGEAARELA-------ENEFDSRVQAKRYLSLY 362 (365)
T ss_pred --------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-------HHhcCHHHHHHHHHHHH
Confidence 4789999999999998743334444444332 22344455555555544
No 63
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.00 E-value=9.6e-07 Score=89.14 Aligned_cols=93 Identities=18% Similarity=0.123 Sum_probs=65.2
Q ss_pred CCCeEEecccchh---hhhccCCccccccc---CC-chhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccC
Q 011339 337 GRGILILGWAPQV---LILSHPSIGGFLTH---CS-WNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEV 409 (488)
Q Consensus 337 ~~nv~~~~~~pq~---~ll~~~~~~~~Ith---gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~ 409 (488)
..++.+.+++|+. .++..+++ +|.. -| ..++.||+++|+|+|+.-.. .....+ ..-+.|...+
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i-~~~~~g~~~~--- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETV-VDGETGFLCE--- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHh-ccCCceEEeC---
Confidence 4689999999875 46788887 6532 22 24789999999999997543 344455 3545565552
Q ss_pred CCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Q 011339 410 PLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREF 452 (488)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l 452 (488)
.+++++.++|.++++|++..+.+.+++++.
T Consensus 349 -------------~~~~~~a~~i~~l~~~~~~~~~~~~~a~~~ 378 (392)
T cd03805 349 -------------PTPEEFAEAMLKLANDPDLADRMGAAGRKR 378 (392)
T ss_pred -------------CCHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 378999999999999885555555555543
No 64
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.96 E-value=1.3e-06 Score=84.83 Aligned_cols=301 Identities=20% Similarity=0.187 Sum_probs=160.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCccccC
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFDM 89 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~ 89 (488)
|||.+--. ..-|+.-+..+.++|.++||+|.+.+-.. +.....+..+ ++.+..+.. .+ .
T Consensus 1 MkIwiDi~-~p~hvhfFk~~I~eL~~~GheV~it~R~~--~~~~~LL~~y-----g~~y~~iG~--------~g-~---- 59 (335)
T PF04007_consen 1 MKIWIDIT-HPAHVHFFKNIIRELEKRGHEVLITARDK--DETEELLDLY-----GIDYIVIGK--------HG-D---- 59 (335)
T ss_pred CeEEEECC-CchHHHHHHHHHHHHHhCCCEEEEEEecc--chHHHHHHHc-----CCCeEEEcC--------CC-C----
Confidence 56655544 33499999999999999999999887753 2333444433 788877741 11 0
Q ss_pred CCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEEecchHHHHHHHhhhcccccccc
Q 011339 90 LHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSTVQEN 169 (488)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 169 (488)
.....+.... .....+.+++++ .+||++|+- ..+.+..+|..+|+|++.+.=.......
T Consensus 60 ----~~~~Kl~~~~-~R~~~l~~~~~~--~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~------------- 118 (335)
T PF04007_consen 60 ----SLYGKLLESI-ERQYKLLKLIKK--FKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQ------------- 118 (335)
T ss_pred ----CHHHHHHHHH-HHHHHHHHHHHh--hCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhcc-------------
Confidence 1122333322 224456666666 799999974 4457788999999999997432111100
Q ss_pred cCCCCCccccCCCCCccccccccchH-HHHHHHHHhhccccceEE-EcCchhhhHHHHHHHHhhcCCceEEeCCCCCCCC
Q 011339 170 VTSNSDYLVVPGLPDQIEMTKVREKW-KDFGEMVLAADMKSYGII-INTFEELELEYVKECKKTKGGKVWCLGPVSLCNK 247 (488)
Q Consensus 170 ~~~~~~~~~~p~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l-~~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~ 247 (488)
....+| +...+.-|. .+ ...+.++ ..+ ..+. .+++.++ .|+-|+ .
T Consensus 119 -----~~Lt~P-la~~i~~P~---~~~~~~~~~~---G~~-~~i~~y~G~~E~----------------ayl~~F-~--- 165 (335)
T PF04007_consen 119 -----NRLTLP-LADVIITPE---AIPKEFLKRF---GAK-NQIRTYNGYKEL----------------AYLHPF-K--- 165 (335)
T ss_pred -----ceeehh-cCCeeECCc---ccCHHHHHhc---CCc-CCEEEECCeeeE----------------EeecCC-C---
Confidence 000111 000000000 00 0000010 001 1111 2332221 222221 1
Q ss_pred CcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccC----CChHHHHHHHHHHhcCCCCeEEEEeCCCCCchhhh
Q 011339 248 QDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICN----LTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQ 323 (488)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~----~~~~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~ 323 (488)
.+++..+-+.-. +.+.|++-+-+... ...+.+..+++.+++.+..+|.......
T Consensus 166 --------------Pd~~vl~~lg~~-~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~------- 223 (335)
T PF04007_consen 166 --------------PDPEVLKELGLD-DEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYED------- 223 (335)
T ss_pred --------------CChhHHHHcCCC-CCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcc-------
Confidence 223333334322 44577787776444 2335566788888888777444443333
Q ss_pred hhhhhHHHHHHhcCCCeEE-ecccchhhhhccCCcccccccCCchhHHHHhhcCCCEeecCcccccchhHHHHHHHhcce
Q 011339 324 EWLLEEKFEERVKGRGILI-LGWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIG 402 (488)
Q Consensus 324 ~~~~p~~~~~~~~~~nv~~-~~~~pq~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G 402 (488)
.++-+ + .-++.+ ..-++-.+||.++++ +|+=|| ....||...|+|.|.+ +.++-...-+.+. +.|+-
T Consensus 224 ---~~~~~-~---~~~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~-~~Gll 291 (335)
T PF04007_consen 224 ---QRELF-E---KYGVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLI-EKGLL 291 (335)
T ss_pred ---hhhHH-h---ccCccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHH-HCCCe
Confidence 11111 1 112332 244555689999999 999877 6778999999999985 2233223445563 66663
Q ss_pred EEecccCCCCCCcccccccccCHHHHHHHHHHHH
Q 011339 403 VRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILM 436 (488)
Q Consensus 403 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l 436 (488)
.+. -+++++.+.|.+.+
T Consensus 292 ~~~-----------------~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 292 YHS-----------------TDPDEIVEYVRKNL 308 (335)
T ss_pred Eec-----------------CCHHHHHHHHHHhh
Confidence 222 46777777665544
No 65
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.94 E-value=3.1e-06 Score=85.91 Aligned_cols=94 Identities=14% Similarity=0.106 Sum_probs=67.8
Q ss_pred CCCeEEecccchh---hhhccCCcccccc---cCCc-hhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccC
Q 011339 337 GRGILILGWAPQV---LILSHPSIGGFLT---HCSW-NSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEV 409 (488)
Q Consensus 337 ~~nv~~~~~~pq~---~ll~~~~~~~~It---hgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~ 409 (488)
..++.+.+++|+. .+++.+++ +|. +.|. .++.||+++|+|+|+.... .....+ ++-+.|..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i-~~~~~g~~~~~-- 352 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAV-ADGETGLLVDG-- 352 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhh-ccCCceEECCC--
Confidence 3578898998764 47888888 663 2343 5899999999999986653 344456 46666776654
Q ss_pred CCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Q 011339 410 PLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREF 452 (488)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l 452 (488)
-+.++++++|.++++|++..+.+.+++++.
T Consensus 353 -------------~d~~~la~~i~~~l~~~~~~~~~~~~~~~~ 382 (405)
T TIGR03449 353 -------------HDPADWADALARLLDDPRTRIRMGAAAVEH 382 (405)
T ss_pred -------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 378999999999999875555566665553
No 66
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.94 E-value=2.7e-06 Score=84.39 Aligned_cols=156 Identities=12% Similarity=0.082 Sum_probs=88.3
Q ss_pred eEEEEeeCCccC-CChHHHHHHHHHHhcCCCCe-EEEEeCCCCCchhhhhhhhhHHHHHHh-cCCCeEEecccch-hhhh
Q 011339 277 SVVYVCLGSICN-LTSSQMIELGLGLEASKKPF-IWVIRGGNNTSKEIQEWLLEEKFEERV-KGRGILILGWAPQ-VLIL 352 (488)
Q Consensus 277 ~vV~vs~Gs~~~-~~~~~~~~~~~a~~~~~~~~-v~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~nv~~~~~~pq-~~ll 352 (488)
..+++..|.+.. ...+.+..++..+...+..+ ++.+|... ......+. +-. ..... ...++.+.+|.+. ..++
T Consensus 185 ~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~-~~~~~~~~-~~~-~~~~~~~~~~v~~~g~~~~~~~~l 261 (355)
T cd03819 185 KPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQ-GRRFYYAE-LLE-LIKRLGLQDRVTFVGHCSDMPAAY 261 (355)
T ss_pred ceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCc-ccchHHHH-HHH-HHHHcCCcceEEEcCCcccHHHHH
Confidence 356677777665 33444555555555433333 33344332 11111110 000 11111 1457888888543 5588
Q ss_pred ccCCcccccc--cCCc-hhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHH
Q 011339 353 SHPSIGGFLT--HCSW-NSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVV 429 (488)
Q Consensus 353 ~~~~~~~~It--hgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~ 429 (488)
..+++-++-+ +-|. +++.||+++|+|+|+... ......+ +.-+.|..++. -+.+++.
T Consensus 262 ~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i-~~~~~g~~~~~---------------~~~~~l~ 321 (355)
T cd03819 262 ALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETV-RPGETGLLVPP---------------GDAEALA 321 (355)
T ss_pred HhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHH-hCCCceEEeCC---------------CCHHHHH
Confidence 8888833333 2233 599999999999998654 3345555 35557877764 4899999
Q ss_pred HHHHHHH-ccCcchHHHHHHHHHHHHH
Q 011339 430 KAINILM-DEGGETDDRRKRAREFQIM 455 (488)
Q Consensus 430 ~ai~~~l-~~~~~~~~~~~~a~~l~~~ 455 (488)
++|.+++ .|+++.+.+.+++++..+.
T Consensus 322 ~~i~~~~~~~~~~~~~~~~~a~~~~~~ 348 (355)
T cd03819 322 QALDQILSLLPEGRAKMFAKARMCVET 348 (355)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 9996555 4665555566666655443
No 67
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.93 E-value=2e-07 Score=91.32 Aligned_cols=154 Identities=14% Similarity=0.048 Sum_probs=88.6
Q ss_pred eEEEEeeCCccCCChHHHHHHHHHHhcCCCC-eEEEEeCCCCCchhhhhhhhhHHHHHHhcC-CCeEEecccchhhhhcc
Q 011339 277 SVVYVCLGSICNLTSSQMIELGLGLEASKKP-FIWVIRGGNNTSKEIQEWLLEEKFEERVKG-RGILILGWAPQVLILSH 354 (488)
Q Consensus 277 ~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~-~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~nv~~~~~~pq~~ll~~ 354 (488)
++|.+--||...--...+-.++++.+....+ .++.+.... + . +.+...... ..+.+.+ .-.+++..
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~-~--------~-~~i~~~~~~~~~~~~~~--~~~~~m~~ 235 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFF-K--------G-KDLKEIYGDISEFEISY--DTHKALLE 235 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCC-c--------H-HHHHHHHhcCCCcEEec--cHHHHHHh
Confidence 5899999988773333444444554433221 333333322 1 1 112121111 1222222 33568899
Q ss_pred CCcccccccCCchhHHHHhhcCCCEeecCc--ccccchhHHHHHH---HhcceEEecc----cCCCCCCcccccccccCH
Q 011339 355 PSIGGFLTHCSWNSSLEGISAGVPLITWPL--YGDQFWNEKLIVQ---VLNIGVRIGV----EVPLDFGEEEEIGVLVKK 425 (488)
Q Consensus 355 ~~~~~~IthgG~gs~~eal~~GvP~v~~P~--~~DQ~~na~rv~e---~~G~G~~l~~----~~~~~~~~~~~~~~~~~~ 425 (488)
+++ +|+-.|..|+ |+...|+|+|+ +. ..=|+.||+++ . ..|++--+-. ++ =.+|-.+...|+
T Consensus 236 aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~l-v~~~~igL~Nii~~~~~~~~----vvPEllQ~~~t~ 306 (347)
T PRK14089 236 AEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMF-VKLKHIGLANIFFDFLGKEP----LHPELLQEFVTV 306 (347)
T ss_pred hhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHH-HcCCeeehHHHhcCCCcccc----cCchhhcccCCH
Confidence 999 9999999999 99999999988 43 34588899998 5 5555444411 00 001112236899
Q ss_pred HHHHHHHHHHHccCcchHHHHHHHHHHHHHH
Q 011339 426 EDVVKAINILMDEGGETDDRRKRAREFQIMA 456 (488)
Q Consensus 426 ~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~ 456 (488)
+.|.+++.+. . .+.+++...++++.+
T Consensus 307 ~~la~~i~~~-~----~~~~~~~~~~l~~~l 332 (347)
T PRK14089 307 ENLLKAYKEM-D----REKFFKKSKELREYL 332 (347)
T ss_pred HHHHHHHHHH-H----HHHHHHHHHHHHHHh
Confidence 9999999772 1 125666666665554
No 68
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.92 E-value=2e-06 Score=85.16 Aligned_cols=93 Identities=18% Similarity=0.217 Sum_probs=65.2
Q ss_pred CCCeEEecccchhh---hhccCCcccccc--c--------CCchhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceE
Q 011339 337 GRGILILGWAPQVL---ILSHPSIGGFLT--H--------CSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGV 403 (488)
Q Consensus 337 ~~nv~~~~~~pq~~---ll~~~~~~~~It--h--------gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~ 403 (488)
..|+.+.+++|+.+ ++..+++ +|. . |.-+++.||+++|+|+|+.+.. .....+ +....|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i-~~~~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELV-EDGETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----Ccchhh-hCCCceE
Confidence 46899999997544 6677887 555 2 2346899999999999987653 233455 3554777
Q ss_pred EecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHH
Q 011339 404 RIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRARE 451 (488)
Q Consensus 404 ~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~ 451 (488)
.++. -+.+++.++|.++++|++...++.+++++
T Consensus 308 ~~~~---------------~~~~~l~~~i~~~~~~~~~~~~~~~~a~~ 340 (355)
T cd03799 308 LVPP---------------GDPEALADAIERLLDDPELRREMGEAGRA 340 (355)
T ss_pred EeCC---------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 7754 38899999999999987444444444443
No 69
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.88 E-value=2.6e-06 Score=85.11 Aligned_cols=165 Identities=18% Similarity=0.178 Sum_probs=93.7
Q ss_pred EEEEeeCCccCCChHHHHHHHHHHhcCCCCe-EEEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEEecccch--h---hh
Q 011339 278 VVYVCLGSICNLTSSQMIELGLGLEASKKPF-IWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQ--V---LI 351 (488)
Q Consensus 278 vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~-v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq--~---~l 351 (488)
.+++..|.+.......+..+++++......+ ++.+|.+. ..+.+.+ .....-...++.+.+|+++ . ..
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~-~~~~l~~-----~~~~~~l~~~v~f~G~~~~~~~~~~~~ 254 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGS-DFEKCKA-----YSRELGIEQRIIWHGWQSQPWEVVQQK 254 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCc-cHHHHHH-----HHHHcCCCCeEEEecccCCcHHHHHHH
Confidence 4557777765322233445666665543233 33444443 2222211 1111112468888888753 2 23
Q ss_pred hccCCcccccc--c--CCchhHHHHhhcCCCEeecC-cccccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHH
Q 011339 352 LSHPSIGGFLT--H--CSWNSSLEGISAGVPLITWP-LYGDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKE 426 (488)
Q Consensus 352 l~~~~~~~~It--h--gG~gs~~eal~~GvP~v~~P-~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~ 426 (488)
++.+++ +|. + |--.++.||+++|+|+|+.- ..+ ....+ +.-..|..++. -+.+
T Consensus 255 ~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv-~~~~~G~lv~~---------------~d~~ 312 (359)
T PRK09922 255 IKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDII-KPGLNGELYTP---------------GNID 312 (359)
T ss_pred HhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHc-cCCCceEEECC---------------CCHH
Confidence 445666 553 2 22469999999999999876 322 22344 35445766654 4899
Q ss_pred HHHHHHHHHHccCc--chHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHc
Q 011339 427 DVVKAINILMDEGG--ETDDRRKRAREFQIMAKRATEETRSSSLMIKLLIQDIMQ 479 (488)
Q Consensus 427 ~l~~ai~~~l~~~~--~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~ 479 (488)
++.++|.++++|++ ..+.++++++++.+..- ...+.++++.+++
T Consensus 313 ~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 358 (359)
T PRK09922 313 EFVGKLNKVISGEVKYQHDAIPNSIERFYEVLY---------FKNLNNALFSKLQ 358 (359)
T ss_pred HHHHHHHHHHhCcccCCHHHHHHHHHHhhHHHH---------HHHHHHHHHHHhc
Confidence 99999999999985 34456666666555432 2345555555544
No 70
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.88 E-value=2.8e-06 Score=84.28 Aligned_cols=93 Identities=17% Similarity=0.252 Sum_probs=63.7
Q ss_pred CCCeEEec-ccch---hhhhccCCcccccc--c----CCchhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEec
Q 011339 337 GRGILILG-WAPQ---VLILSHPSIGGFLT--H----CSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIG 406 (488)
Q Consensus 337 ~~nv~~~~-~~pq---~~ll~~~~~~~~It--h----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~ 406 (488)
..|+.+.. |+|+ ..+++.+++ +|. + |-.+++.||+++|+|+|+.+..+ ...+ ...+.|...+
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i-~~~~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEV-LDGGTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hhee-eeCCCcEEEc
Confidence 45777765 4875 457788888 652 2 33468999999999999987644 3334 3556677665
Q ss_pred ccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Q 011339 407 VEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREF 452 (488)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l 452 (488)
. -+.+++.+++.++++|++..+.+.+++++.
T Consensus 318 ~---------------~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 348 (366)
T cd03822 318 P---------------GDPAALAEAIRRLLADPELAQALRARAREY 348 (366)
T ss_pred C---------------CCHHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 4 368999999999999874444444444443
No 71
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.88 E-value=3.6e-06 Score=84.02 Aligned_cols=93 Identities=17% Similarity=0.179 Sum_probs=67.1
Q ss_pred CCCeEEecccchhh---hhccCCccccccc----------CCchhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceE
Q 011339 337 GRGILILGWAPQVL---ILSHPSIGGFLTH----------CSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGV 403 (488)
Q Consensus 337 ~~nv~~~~~~pq~~---ll~~~~~~~~Ith----------gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~ 403 (488)
..++.+.+++|+.+ ++..+++ +|.- |-.+++.||+++|+|+|+-+.. .+...+ +..+.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i-~~~~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAV-EDGETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----Cchhhe-ecCCeeE
Confidence 46788889998654 5788888 5532 2246899999999999987663 366666 4777787
Q ss_pred EecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHH
Q 011339 404 RIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRARE 451 (488)
Q Consensus 404 ~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~ 451 (488)
.++. -+.+++.++|.++++|++..+.+.+++++
T Consensus 317 ~~~~---------------~d~~~l~~~i~~l~~~~~~~~~~~~~a~~ 349 (367)
T cd05844 317 LVPE---------------GDVAALAAALGRLLADPDLRARMGAAGRR 349 (367)
T ss_pred EECC---------------CCHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 7764 47899999999999987433344444443
No 72
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.85 E-value=6.5e-06 Score=81.56 Aligned_cols=92 Identities=14% Similarity=0.154 Sum_probs=65.3
Q ss_pred CCCeEEecccchhh---hhccCCcccccc--c-CC-chhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccC
Q 011339 337 GRGILILGWAPQVL---ILSHPSIGGFLT--H-CS-WNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEV 409 (488)
Q Consensus 337 ~~nv~~~~~~pq~~---ll~~~~~~~~It--h-gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~ 409 (488)
..++.+.+|+++.+ ++..+++ +|. + .| .+++.||+++|+|+|+.+. ......+ +. +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~-~~-~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELI-EY-GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHh-hc-CceEEeCC--
Confidence 46888999998544 5788887 543 2 23 3689999999999999664 3455556 35 77766643
Q ss_pred CCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Q 011339 410 PLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREF 452 (488)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l 452 (488)
+.+++.++|.++++|++..+.+.+++++.
T Consensus 331 --------------~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 359 (375)
T cd03821 331 --------------DVDALAAALRRALELPQRLKAMGENGRAL 359 (375)
T ss_pred --------------ChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 44999999999999875445555555554
No 73
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.83 E-value=1.3e-06 Score=85.61 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=57.7
Q ss_pred CCCeEEecccch-hhhhccCCcccccc--c--CCchhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCCC
Q 011339 337 GRGILILGWAPQ-VLILSHPSIGGFLT--H--CSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPL 411 (488)
Q Consensus 337 ~~nv~~~~~~pq-~~ll~~~~~~~~It--h--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~ 411 (488)
..++.+.++.++ ..++..+++ +|. + |.-+++.||+++|+|+|+... ......+ +..+.|...+..
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~----~~~~e~i-~~~~~g~~~~~~--- 314 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDC----PGPREIL-EDGENGLLVPVG--- 314 (353)
T ss_pred CccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCC----CChHHHh-cCCCceEEECCC---
Confidence 457888888765 458888888 553 2 234689999999999998655 3556677 577788888654
Q ss_pred CCCcccccccccCHHHH---HHHHHHHHccC
Q 011339 412 DFGEEEEIGVLVKKEDV---VKAINILMDEG 439 (488)
Q Consensus 412 ~~~~~~~~~~~~~~~~l---~~ai~~~l~~~ 439 (488)
+.+.+ .+++.+++.++
T Consensus 315 ------------~~~~~~~~~~~i~~~~~~~ 333 (353)
T cd03811 315 ------------DEAALAAAALALLDLLLDP 333 (353)
T ss_pred ------------CHHHHHHHHHHHHhccCCh
Confidence 66676 56666666666
No 74
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.83 E-value=1.5e-05 Score=78.61 Aligned_cols=79 Identities=20% Similarity=0.300 Sum_probs=57.0
Q ss_pred CCeEEecccch-hhhhccCCcccccccCC----chhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCCCC
Q 011339 338 RGILILGWAPQ-VLILSHPSIGGFLTHCS----WNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPLD 412 (488)
Q Consensus 338 ~nv~~~~~~pq-~~ll~~~~~~~~IthgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~ 412 (488)
.++.+.+...+ ..+++.+++ +|.... .+++.||+++|+|+|+... ..+...+ +. .|..++.
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~----~~~~e~~-~~--~g~~~~~----- 316 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDV----GDNAELV-GD--TGFLVPP----- 316 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCC----CChHHHh-hc--CCEEeCC-----
Confidence 46666554443 568888888 775443 3799999999999998543 4556666 35 5666654
Q ss_pred CCcccccccccCHHHHHHHHHHHHccCc
Q 011339 413 FGEEEEIGVLVKKEDVVKAINILMDEGG 440 (488)
Q Consensus 413 ~~~~~~~~~~~~~~~l~~ai~~~l~~~~ 440 (488)
-+.+++.++|.++++|++
T Consensus 317 ----------~~~~~l~~~i~~l~~~~~ 334 (365)
T cd03807 317 ----------GDPEALAEAIEALLADPA 334 (365)
T ss_pred ----------CCHHHHHHHHHHHHhChH
Confidence 378999999999999874
No 75
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.81 E-value=1.2e-05 Score=81.46 Aligned_cols=165 Identities=12% Similarity=0.127 Sum_probs=88.6
Q ss_pred CeEEEEeeCCccC-CChHHHHHHHHHHhcCCCCeEE-EEeCCCCCchhhhhhhhhHHHHHHhc-CCCeEEecccchh---
Q 011339 276 NSVVYVCLGSICN-LTSSQMIELGLGLEASKKPFIW-VIRGGNNTSKEIQEWLLEEKFEERVK-GRGILILGWAPQV--- 349 (488)
Q Consensus 276 ~~vV~vs~Gs~~~-~~~~~~~~~~~a~~~~~~~~v~-~~~~~~~~~~~~~~~~~p~~~~~~~~-~~nv~~~~~~pq~--- 349 (488)
+..+++..|.... ...+.+...+..+.+....+-+ .++.+. ....+.+ ...+.. .+++.+.+|+|+.
T Consensus 192 ~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~-~~~~l~~------~~~~~~l~~~v~~~G~~~~~~~~ 264 (398)
T cd03796 192 DKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGP-KRILLEE------MREKYNLQDRVELLGAVPHERVR 264 (398)
T ss_pred CceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCc-hHHHHHH------HHHHhCCCCeEEEeCCCCHHHHH
Confidence 3466777787755 3334444444444332223332 334332 1111111 111221 4568888999764
Q ss_pred hhhccCCcccccc---cCCc-hhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCCCCCCcccccccccCH
Q 011339 350 LILSHPSIGGFLT---HCSW-NSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKK 425 (488)
Q Consensus 350 ~ll~~~~~~~~It---hgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~ 425 (488)
.+++.+++ +|. +-|. .++.||+++|+|+|+.+..+ ....+ +. |.+ .+. . .+.
T Consensus 265 ~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i-~~-~~~-~~~-~--------------~~~ 320 (398)
T cd03796 265 DVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVL-PP-DMI-LLA-E--------------PDV 320 (398)
T ss_pred HHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhe-eC-Cce-eec-C--------------CCH
Confidence 47778887 653 2244 39999999999999987743 23344 23 333 222 2 378
Q ss_pred HHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 011339 426 EDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETRSSSLMIKLLIQDIM 478 (488)
Q Consensus 426 ~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~ 478 (488)
+++.+++.+++++..+...+.+++ ++.+++.-|-...++++++...
T Consensus 321 ~~l~~~l~~~l~~~~~~~~~~~~~-------~~~~~~~fs~~~~~~~~~~~y~ 366 (398)
T cd03796 321 ESIVRKLEEAISILRTGKHDPWSF-------HNRVKKMYSWEDVAKRTEKVYD 366 (398)
T ss_pred HHHHHHHHHHHhChhhhhhHHHHH-------HHHHHhhCCHHHHHHHHHHHHH
Confidence 999999999998642221222222 2223444555555666555543
No 76
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.80 E-value=1.3e-06 Score=87.45 Aligned_cols=318 Identities=12% Similarity=0.074 Sum_probs=160.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHC-CCeEEEEeCCcchhhhHHHHHhhhcCCCCeEE-EEeeCCccccCCCCCCccc
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQH-GAAITIVTTPANAARFKTVVARAMQSGLPLQL-IEIQFPYQEAGVPEGCENF 87 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~l~~~~~~~ 87 (488)
|||++++ ++.-|+.=+.+|.++|.++ +.++.++.+...........+.. ++.. +.+. +.. .
T Consensus 1 ~~i~~~~-gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~-----~i~~~~~~~-------~~~--~-- 63 (365)
T TIGR00236 1 LKVSIVL-GTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDLF-----HLPPDYDLN-------IMS--P-- 63 (365)
T ss_pred CeEEEEE-ecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHhc-----CCCCCeeee-------cCC--C--
Confidence 5777654 4778888888899999987 56666665554333333322211 3321 1111 100 0
Q ss_pred cCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcC--CC-cchHHHHHhcCCCcEEEecchHHHHHHHhhhccc
Q 011339 88 DMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDT--CY-PWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTS 164 (488)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~--~~-~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~ 164 (488)
.. .. ..........+.+++++ .+||+|++-. .. .++..+|..+|||++.+.... .
T Consensus 64 ---~~-~~----~~~~~~~~~~l~~~l~~--~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~~~g~-~----------- 121 (365)
T TIGR00236 64 ---GQ-TL----GEITSNMLEGLEELLLE--EKPDIVLVQGDTTTTLAGALAAFYLQIPVGHVEAGL-R----------- 121 (365)
T ss_pred ---CC-CH----HHHHHHHHHHHHHHHHH--cCCCEEEEeCCchHHHHHHHHHHHhCCCEEEEeCCC-C-----------
Confidence 00 11 11222334677788888 8999999753 32 367889999999998652220 0
Q ss_pred ccccccCCCCCccccCCCCCccccccccchHHH-HHHHHHhhccccceEEEcCchhhhHHHHHHHHh-hcC-CceEEeCC
Q 011339 165 TVQENVTSNSDYLVVPGLPDQIEMTKVREKWKD-FGEMVLAADMKSYGIIINTFEELELEYVKECKK-TKG-GKVWCLGP 241 (488)
Q Consensus 165 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~-~~~-~~~~~vGp 241 (488)
+.. ....+|. ...+ ...+ .++.++..+ + ...+.+.+ -.+ .++..+|.
T Consensus 122 ---------s~~-~~~~~~~---------~~~r~~~~~------~ad~~~~~s-~----~~~~~l~~~G~~~~~I~vign 171 (365)
T TIGR00236 122 ---------TGD-RYSPMPE---------EINRQLTGH------IADLHFAPT-E----QAKDNLLRENVKADSIFVTGN 171 (365)
T ss_pred ---------cCC-CCCCCcc---------HHHHHHHHH------HHHhccCCC-H----HHHHHHHHcCCCcccEEEeCC
Confidence 000 0001121 0100 1111 123333333 1 11222222 122 36788885
Q ss_pred CCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhcC-----CCCeEEEEeCCC
Q 011339 242 VSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEAS-----KKPFIWVIRGGN 316 (488)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~v~~~~~~~ 316 (488)
...+..... .. .....++.+.+. .++++|+++.+-..... ..+..++++++.. +.++++....+.
T Consensus 172 ~~~d~~~~~----~~---~~~~~~~~~~~~--~~~~~vl~~~hr~~~~~-k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~ 241 (365)
T TIGR00236 172 TVIDALLTN----VE---IAYSSPVLSEFG--EDKRYILLTLHRRENVG-EPLENIFKAIREIVEEFEDVQIVYPVHLNP 241 (365)
T ss_pred hHHHHHHHH----Hh---hccchhHHHhcC--CCCCEEEEecCchhhhh-hHHHHHHHHHHHHHHHCCCCEEEEECCCCh
Confidence 421110000 00 000112222222 13346766654322211 2355566665542 345555433222
Q ss_pred CCchhhhhhhhhHHHHHHh-cCCCeEEecccch---hhhhccCCcccccccCCchhHHHHhhcCCCEeecCcccccchhH
Q 011339 317 NTSKEIQEWLLEEKFEERV-KGRGILILGWAPQ---VLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQFWNE 392 (488)
Q Consensus 317 ~~~~~~~~~~~p~~~~~~~-~~~nv~~~~~~pq---~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~DQ~~na 392 (488)
. .-..+.... ...++++.+.+++ ..+++.+++ +|+-.|. .+.||+++|+|+|.++-.++++.
T Consensus 242 ----~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~--vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e-- 307 (365)
T TIGR00236 242 ----V-----VREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHL--ILTDSGG-VQEEAPSLGKPVLVLRDTTERPE-- 307 (365)
T ss_pred ----H-----HHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCE--EEECChh-HHHHHHHcCCCEEECCCCCCChH--
Confidence 1 111111211 2357888776654 456778887 8987764 47999999999999976555442
Q ss_pred HHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccC
Q 011339 393 KLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEG 439 (488)
Q Consensus 393 ~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~ 439 (488)
+. ..|.+..+ . .++++|.+++.++++|+
T Consensus 308 --~~-~~g~~~lv--~--------------~d~~~i~~ai~~ll~~~ 335 (365)
T TIGR00236 308 --TV-EAGTNKLV--G--------------TDKENITKAAKRLLTDP 335 (365)
T ss_pred --HH-hcCceEEe--C--------------CCHHHHHHHHHHHHhCh
Confidence 32 45666544 2 47899999999999887
No 77
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.75 E-value=9.5e-06 Score=80.59 Aligned_cols=84 Identities=17% Similarity=0.050 Sum_probs=59.4
Q ss_pred CCCeEEecccch-hhhhccCCccccccc----CCchhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCCC
Q 011339 337 GRGILILGWAPQ-VLILSHPSIGGFLTH----CSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPL 411 (488)
Q Consensus 337 ~~nv~~~~~~pq-~~ll~~~~~~~~Ith----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~ 411 (488)
..++.+.++..+ ..++..+++ +|.- |-..++.||+++|+|+|+....+ ....+ +. +.|..+..
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i-~~-~~~~~~~~---- 315 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDL-TD-LVKFLSLD---- 315 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhh-cc-CccEEeCC----
Confidence 457888787544 568888888 5543 33478999999999999866543 34455 35 55554432
Q ss_pred CCCcccccccccCHHHHHHHHHHHHccCcchH
Q 011339 412 DFGEEEEIGVLVKKEDVVKAINILMDEGGETD 443 (488)
Q Consensus 412 ~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~ 443 (488)
-++++++++|.++++|++..+
T Consensus 316 -----------~~~~~~a~~i~~l~~~~~~~~ 336 (358)
T cd03812 316 -----------ESPEIWAEEILKLKSEDRRER 336 (358)
T ss_pred -----------CCHHHHHHHHHHHHhCcchhh
Confidence 368999999999999984433
No 78
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.75 E-value=4.2e-06 Score=84.81 Aligned_cols=92 Identities=17% Similarity=0.245 Sum_probs=63.9
Q ss_pred CCCeEEecccch-hhhhccCCccccc--cc--CCc-hhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCC
Q 011339 337 GRGILILGWAPQ-VLILSHPSIGGFL--TH--CSW-NSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVP 410 (488)
Q Consensus 337 ~~nv~~~~~~pq-~~ll~~~~~~~~I--th--gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~ 410 (488)
..++.+.+++++ ..+++.+++ +| ++ .|. +.+.||+++|+|+|+.+...+. .. +..|.|..+.
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~-----i~-~~~~~g~lv~---- 346 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEG-----ID-ALPGAELLVA---- 346 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCccccc-----cc-ccCCcceEeC----
Confidence 568889999986 457888888 65 32 454 4699999999999998864322 12 1335565553
Q ss_pred CCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Q 011339 411 LDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREF 452 (488)
Q Consensus 411 ~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l 452 (488)
-++++++++|.++++|++..+.+.+++++.
T Consensus 347 ------------~~~~~la~ai~~ll~~~~~~~~~~~~ar~~ 376 (397)
T TIGR03087 347 ------------ADPADFAAAILALLANPAEREELGQAARRR 376 (397)
T ss_pred ------------CCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 378999999999999874444455554443
No 79
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.70 E-value=3e-05 Score=77.11 Aligned_cols=107 Identities=17% Similarity=0.151 Sum_probs=64.1
Q ss_pred CCCeEEecccchhh---hhccCCcccccccC----Cc-hhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEeccc
Q 011339 337 GRGILILGWAPQVL---ILSHPSIGGFLTHC----SW-NSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVE 408 (488)
Q Consensus 337 ~~nv~~~~~~pq~~---ll~~~~~~~~Ithg----G~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~ 408 (488)
.++|.+.+++++.+ ++..+++ +|.+. |. +++.||+++|+|+|+....+ +...+ +. -|...+..
T Consensus 247 ~~~V~~~g~~~~~~~~~~~~~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~-~~--~g~~~~~~ 317 (363)
T cd04955 247 DPRIIFVGPIYDQELLELLRYAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVL-GD--KAIYFKVG 317 (363)
T ss_pred CCcEEEccccChHHHHHHHHhCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceee-cC--CeeEecCc
Confidence 57899999998864 5556666 55433 33 57999999999999876542 22333 23 23333322
Q ss_pred CCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 011339 409 VPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETRSSSLMIKLLIQD 476 (488)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~ 476 (488)
+. +.++|.++++|++....+.++++ +..++.-+....++++++.
T Consensus 318 ---------------~~--l~~~i~~l~~~~~~~~~~~~~~~-------~~~~~~fs~~~~~~~~~~~ 361 (363)
T cd04955 318 ---------------DD--LASLLEELEADPEEVSAMAKAAR-------ERIREKYTWEKIADQYEEL 361 (363)
T ss_pred ---------------hH--HHHHHHHHHhCHHHHHHHHHHHH-------HHHHHhCCHHHHHHHHHHH
Confidence 11 99999999998733333333333 3333344545555555543
No 80
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.70 E-value=4.5e-05 Score=74.61 Aligned_cols=326 Identities=15% Similarity=0.181 Sum_probs=183.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEe-CCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCcccc
Q 011339 12 FVLFPFLAQGHMIPMIDTARLLAQH--GAAITIVT-TPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFD 88 (488)
Q Consensus 12 vl~~~~~~~GHv~p~l~LA~~L~~r--GH~Vt~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~ 88 (488)
.+.+=.-+.|-++-.++|.++|.++ ++.|++-+ |+...+..++.. +..+....+|++
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~------~~~v~h~YlP~D-------------- 110 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALF------GDSVIHQYLPLD-------------- 110 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHc------CCCeEEEecCcC--------------
Confidence 3444445899999999999999999 88888877 565555555442 223444444421
Q ss_pred CCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCC-Cc-chHHHHHhcCCCcEEEecchHHHHHHHhhhccccc
Q 011339 89 MLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTC-YP-WTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSTV 166 (488)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~-~~-~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 166 (488)
. ...+.++++. ++||++|.--. .| ....-++..|+|.+.++.=
T Consensus 111 ------~-----------~~~v~rFl~~--~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR---------------- 155 (419)
T COG1519 111 ------L-----------PIAVRRFLRK--WRPKLLIIMETELWPNLINELKRRGIPLVLVNAR---------------- 155 (419)
T ss_pred ------c-----------hHHHHHHHHh--cCCCEEEEEeccccHHHHHHHHHcCCCEEEEeee----------------
Confidence 0 1234556666 89999875444 44 3455677889999886321
Q ss_pred ccccCCCCCccccCCCCCccccccccchHHHHHHHHHhhccccceEEEcCchhhhHHHHHHHHhhcC-CceEEeCCCCCC
Q 011339 167 QENVTSNSDYLVVPGLPDQIEMTKVREKWKDFGEMVLAADMKSYGIIINTFEELELEYVKECKKTKG-GKVWCLGPVSLC 245 (488)
Q Consensus 167 ~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~-~~~~~vGpl~~~ 245 (488)
++.+ ..+ .|..+..-....+.+.++++.-+-.+ .. .+. .++ +++...|.+=.+
T Consensus 156 ---LS~r----S~~-------------~y~k~~~~~~~~~~~i~li~aQse~D--~~---Rf~-~LGa~~v~v~GNlKfd 209 (419)
T COG1519 156 ---LSDR----SFA-------------RYAKLKFLARLLFKNIDLILAQSEED--AQ---RFR-SLGAKPVVVTGNLKFD 209 (419)
T ss_pred ---echh----hhH-------------HHHHHHHHHHHHHHhcceeeecCHHH--HH---HHH-hcCCcceEEecceeec
Confidence 0000 011 12222222333445556666555222 11 221 122 346667754222
Q ss_pred CCCcchhhhhCCCCcccc---hhhhcccCCCCCCeEEEEeeCCccCCChHHHHHHHHHHhcC--CCCeEEEEeCCCCCch
Q 011339 246 NKQDIDKAERGKKAAVDI---SECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEAS--KKPFIWVIRGGNNTSK 320 (488)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~--~~~~v~~~~~~~~~~~ 320 (488)
.... ..+. ..+...++.. + -+.|..+|+.. ..+.+-....++++. +..+||+-...+
T Consensus 210 ~~~~----------~~~~~~~~~~r~~l~~~--r-~v~iaaSTH~G-Eeei~l~~~~~l~~~~~~~llIlVPRHpE---- 271 (419)
T COG1519 210 IEPP----------PQLAAELAALRRQLGGH--R-PVWVAASTHEG-EEEIILDAHQALKKQFPNLLLILVPRHPE---- 271 (419)
T ss_pred CCCC----------hhhHHHHHHHHHhcCCC--C-ceEEEecCCCc-hHHHHHHHHHHHHhhCCCceEEEecCChh----
Confidence 1100 0011 1233334432 2 25566666333 334444555555443 245555543332
Q ss_pred hhhhhhhhHHHHHHh--------------cCCCeEEeccc-chhhhhccCCc----ccccccCCchhHHHHhhcCCCEee
Q 011339 321 EIQEWLLEEKFEERV--------------KGRGILILGWA-PQVLILSHPSI----GGFLTHCSWNSSLEGISAGVPLIT 381 (488)
Q Consensus 321 ~~~~~~~p~~~~~~~--------------~~~nv~~~~~~-pq~~ll~~~~~----~~~IthgG~gs~~eal~~GvP~v~ 381 (488)
..++ +- ++.... ...+|++.+-+ ....++.-+++ +-++.+||+| ..|.+++|+|+|.
T Consensus 272 Rf~~--v~-~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~ 347 (419)
T COG1519 272 RFKA--VE-NLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIF 347 (419)
T ss_pred hHHH--HH-HHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEe
Confidence 1111 11 111100 01133333322 12333344433 1256799998 6799999999999
Q ss_pred cCcccccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHH
Q 011339 382 WPLYGDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKR 458 (488)
Q Consensus 382 ~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~ 458 (488)
=|....|.+-++++ ++.|.|+.++ +++.+.+++..+++|+++++.|.+++..+-+..+.
T Consensus 348 Gp~~~Nf~ei~~~l-~~~ga~~~v~-----------------~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~g 406 (419)
T COG1519 348 GPYTFNFSDIAERL-LQAGAGLQVE-----------------DADLLAKAVELLLADEDKREAYGRAGLEFLAQNRG 406 (419)
T ss_pred CCccccHHHHHHHH-HhcCCeEEEC-----------------CHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999 6999999884 36788999999999887777777777776666553
No 81
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.64 E-value=0.00014 Score=74.72 Aligned_cols=113 Identities=12% Similarity=0.094 Sum_probs=70.9
Q ss_pred CCCeEEecccchhhh---hccC--CcccccccC---Cc-hhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecc
Q 011339 337 GRGILILGWAPQVLI---LSHP--SIGGFLTHC---SW-NSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGV 407 (488)
Q Consensus 337 ~~nv~~~~~~pq~~l---l~~~--~~~~~Ithg---G~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~ 407 (488)
.+++.+.+++++.++ ++.+ ++++||... |. .+++||+++|+|+|+.... .....+ +.-..|..++.
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv-~~~~~G~lv~~ 390 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDII-ANCRNGLLVDV 390 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHh-cCCCcEEEeCC
Confidence 467777788776554 5544 123377643 33 5999999999999988653 344555 35456776655
Q ss_pred cCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 011339 408 EVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETRSSSLMIKLLIQD 476 (488)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~ 476 (488)
-++++++++|.++++|++..+.+.++++ +.+++--|-...++++.+.
T Consensus 391 ---------------~d~~~la~~i~~ll~~~~~~~~~~~~a~-------~~~~~~fsw~~~~~~~~~l 437 (439)
T TIGR02472 391 ---------------LDLEAIASALEDALSDSSQWQLWSRNGI-------EGVRRHYSWDAHVEKYLRI 437 (439)
T ss_pred ---------------CCHHHHHHHHHHHHhCHHHHHHHHHHHH-------HHHHHhCCHHHHHHHHHHH
Confidence 4789999999999998743333444443 3333344444445444443
No 82
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.63 E-value=0.00018 Score=72.46 Aligned_cols=116 Identities=19% Similarity=0.169 Sum_probs=70.3
Q ss_pred CeEE-ecccch---hhhhccCCccccccc---CC-chhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCC
Q 011339 339 GILI-LGWAPQ---VLILSHPSIGGFLTH---CS-WNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVP 410 (488)
Q Consensus 339 nv~~-~~~~pq---~~ll~~~~~~~~Ith---gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~ 410 (488)
++.. ..++++ ..++..+++ +|.= -| ..++.||+++|+|+|+... ......+ +.-+.|..++..+.
T Consensus 261 ~v~~~~~~~~~~~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i-~~~~~G~~~~~~~~ 333 (388)
T TIGR02149 261 GIIWINKMLPKEELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVV-VDGETGFLVPPDNS 333 (388)
T ss_pred ceEEecCCCCHHHHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHh-hCCCceEEcCCCCC
Confidence 4553 456765 346788887 6642 23 3577999999999998664 3455666 46667888765410
Q ss_pred CCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 011339 411 LDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETRSSSLMIKLLIQDI 477 (488)
Q Consensus 411 ~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~ 477 (488)
+..-..+++.++|.++++|++..+.+.+++++... +--+....++++++..
T Consensus 334 ---------~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~-------~~~s~~~~~~~~~~~y 384 (388)
T TIGR02149 334 ---------DADGFQAELAKAINILLADPELAKKMGIAGRKRAE-------EEFSWGSIAKKTVEMY 384 (388)
T ss_pred ---------cccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-------HhCCHHHHHHHHHHHH
Confidence 00112389999999999987544445555544322 2334445555555443
No 83
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.60 E-value=1.2e-05 Score=80.43 Aligned_cols=136 Identities=21% Similarity=0.219 Sum_probs=84.2
Q ss_pred CCeEEEEeeCCccCC-ChHHHHHHHHHHhcCCC-CeEEEEeCCCCCchhhhhhhhhHHHHHHhc-CCCeEEecccch---
Q 011339 275 PNSVVYVCLGSICNL-TSSQMIELGLGLEASKK-PFIWVIRGGNNTSKEIQEWLLEEKFEERVK-GRGILILGWAPQ--- 348 (488)
Q Consensus 275 ~~~vV~vs~Gs~~~~-~~~~~~~~~~a~~~~~~-~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~nv~~~~~~pq--- 348 (488)
+++.|++++|..... ....+..++++++.... ++++...........+.+ ....... ..|+.+.++.++
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~-----~~~~~~~~~~~v~~~~~~~~~~~ 271 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRTRPRIRE-----AGLEFLGHHPNVLLISPLGYLYF 271 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCChHHHHHH-----HHHhhccCCCCEEEECCcCHHHH
Confidence 455788888876653 34456677777765432 344444333201112211 1111111 367777765544
Q ss_pred hhhhccCCcccccccCCchhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHH
Q 011339 349 VLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDV 428 (488)
Q Consensus 349 ~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l 428 (488)
..++..+++ ||+..| |.+.|+++.|+|+|+++.. |. +..++ +.|++..+. -+.++|
T Consensus 272 ~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~-~~g~~~~~~----------------~~~~~i 327 (363)
T cd03786 272 LLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETV-ESGTNVLVG----------------TDPEAI 327 (363)
T ss_pred HHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhh-heeeEEecC----------------CCHHHH
Confidence 346777888 999998 7788999999999998743 22 33453 666665442 258899
Q ss_pred HHHHHHHHccC
Q 011339 429 VKAINILMDEG 439 (488)
Q Consensus 429 ~~ai~~~l~~~ 439 (488)
.++|.++++|+
T Consensus 328 ~~~i~~ll~~~ 338 (363)
T cd03786 328 LAAIEKLLSDE 338 (363)
T ss_pred HHHHHHHhcCc
Confidence 99999999876
No 84
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.59 E-value=0.00016 Score=73.46 Aligned_cols=113 Identities=16% Similarity=0.202 Sum_probs=75.8
Q ss_pred CCCeEEecccchhh---hhccCCcccccc--c-------CCc-hhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceE
Q 011339 337 GRGILILGWAPQVL---ILSHPSIGGFLT--H-------CSW-NSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGV 403 (488)
Q Consensus 337 ~~nv~~~~~~pq~~---ll~~~~~~~~It--h-------gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~ 403 (488)
.+++.+.+|+|+.+ ++..+++ +|. + -|. ++++||+++|+|+|+.... .....+ +.-..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v-~~~~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELV-EADKSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----Cchhhh-cCCCceE
Confidence 46788999998754 6778888 664 2 344 5789999999999997653 234445 3545677
Q ss_pred EecccCCCCCCcccccccccCHHHHHHHHHHHHc-cCcchHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 011339 404 RIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMD-EGGETDDRRKRAREFQIMAKRATEETRSSSLMIKLLIQDIM 478 (488)
Q Consensus 404 ~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~-~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~ 478 (488)
.++. -+.++++++|.++++ |++..+.+.+++++. +++--+....++++.+.+.
T Consensus 351 lv~~---------------~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~-------v~~~f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 351 LVPE---------------NDAQALAQRLAAFSQLDTDELAPVVKRAREK-------VETDFNQQVINRELASLLQ 404 (406)
T ss_pred EeCC---------------CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-------HHHhcCHHHHHHHHHHHHh
Confidence 6654 489999999999998 874444444444433 3334444566666665554
No 85
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.59 E-value=0.00013 Score=73.17 Aligned_cols=111 Identities=15% Similarity=0.166 Sum_probs=70.4
Q ss_pred CCeEEecccch-hhhhccCCccccc--cc--CCchhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCCCC
Q 011339 338 RGILILGWAPQ-VLILSHPSIGGFL--TH--CSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPLD 412 (488)
Q Consensus 338 ~nv~~~~~~pq-~~ll~~~~~~~~I--th--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~ 412 (488)
.++.+.++..+ ..+++.+++ +| ++ |--.++.||+++|+|+|+.... .+...+ +.-..|..++.
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i-~~~~~g~~~~~----- 322 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELV-QHGVTGALVPP----- 322 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHh-cCCCceEEeCC-----
Confidence 45555555443 568888888 66 33 3346999999999999997653 355555 35556777754
Q ss_pred CCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 011339 413 FGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETRSSSLMIKLLIQDI 477 (488)
Q Consensus 413 ~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~ 477 (488)
-+.++++++|.++++|++..+.+.+++++ .+.+.-+....++++.+..
T Consensus 323 ----------~d~~~la~~i~~l~~~~~~~~~~~~~a~~-------~~~~~fs~~~~~~~~~~~y 370 (374)
T TIGR03088 323 ----------GDAVALARALQPYVSDPAARRAHGAAGRA-------RAEQQFSINAMVAAYAGLY 370 (374)
T ss_pred ----------CCHHHHHHHHHHHHhCHHHHHHHHHHHHH-------HHHHhCCHHHHHHHHHHHH
Confidence 47899999999999887433334444433 2233444455555555443
No 86
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.57 E-value=8.5e-05 Score=72.98 Aligned_cols=128 Identities=13% Similarity=0.062 Sum_probs=74.8
Q ss_pred EEEeeCCccCCChHHHHHHHHHHhcCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHh--cCCCeEEecccchhh---hhc
Q 011339 279 VYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERV--KGRGILILGWAPQVL---ILS 353 (488)
Q Consensus 279 V~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~nv~~~~~~pq~~---ll~ 353 (488)
+.+..|.... ......++++++..+.++++. +... ....+. ...... ...++.+.+++++.+ +++
T Consensus 173 ~i~~~Gr~~~--~Kg~~~li~~~~~~~~~l~i~-G~~~-~~~~~~------~~~~~~~~~~~~v~~~G~~~~~~~~~~~~ 242 (335)
T cd03802 173 YLLFLGRISP--EKGPHLAIRAARRAGIPLKLA-GPVS-DPDYFY------REIAPELLDGPDIEYLGEVGGAEKAELLG 242 (335)
T ss_pred EEEEEEeecc--ccCHHHHHHHHHhcCCeEEEE-eCCC-CHHHHH------HHHHHhcccCCcEEEeCCCCHHHHHHHHH
Confidence 3455576643 222344667777777665544 4332 111111 111111 257899999998754 678
Q ss_pred cCCcccccc--cCCc-hhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHH
Q 011339 354 HPSIGGFLT--HCSW-NSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVK 430 (488)
Q Consensus 354 ~~~~~~~It--hgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 430 (488)
.+++-++-+ +-|. .++.||+++|+|+|+.... .+...+ +.-..|...+ ..+++.+
T Consensus 243 ~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i-~~~~~g~l~~-----------------~~~~l~~ 300 (335)
T cd03802 243 NARALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVV-EDGVTGFLVD-----------------SVEELAA 300 (335)
T ss_pred hCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----Cchhhe-eCCCcEEEeC-----------------CHHHHHH
Confidence 888833323 2344 5899999999999987663 333444 2333455442 2889999
Q ss_pred HHHHHHcc
Q 011339 431 AINILMDE 438 (488)
Q Consensus 431 ai~~~l~~ 438 (488)
++.++++.
T Consensus 301 ~l~~l~~~ 308 (335)
T cd03802 301 AVARADRL 308 (335)
T ss_pred HHHHHhcc
Confidence 99988753
No 87
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.56 E-value=6.6e-05 Score=74.44 Aligned_cols=79 Identities=11% Similarity=0.206 Sum_probs=55.9
Q ss_pred CCCeEEecccch-hhhhccCCcccccccC---C-chhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCCC
Q 011339 337 GRGILILGWAPQ-VLILSHPSIGGFLTHC---S-WNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPL 411 (488)
Q Consensus 337 ~~nv~~~~~~pq-~~ll~~~~~~~~Ithg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~ 411 (488)
..|+.+.++..+ ..++..+++ +|.-. | .+++.||+++|+|+|+. |...+...+ +. .|..+..
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i-~~--~g~~~~~---- 310 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVV-GD--SGLIVPI---- 310 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEe-cC--CceEeCC----
Confidence 357888887654 568888888 55432 2 46899999999999974 445566666 45 3444443
Q ss_pred CCCcccccccccCHHHHHHHHHHHHccC
Q 011339 412 DFGEEEEIGVLVKKEDVVKAINILMDEG 439 (488)
Q Consensus 412 ~~~~~~~~~~~~~~~~l~~ai~~~l~~~ 439 (488)
-+.+++.+++.+++++.
T Consensus 311 -----------~~~~~~~~~i~~ll~~~ 327 (360)
T cd04951 311 -----------SDPEALANKIDEILKMS 327 (360)
T ss_pred -----------CCHHHHHHHHHHHHhCC
Confidence 48889999999998543
No 88
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.54 E-value=1.8e-05 Score=81.64 Aligned_cols=215 Identities=15% Similarity=0.077 Sum_probs=114.8
Q ss_pred hhhhHHHHHHHHhhcCCceEEeC-CCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHH
Q 011339 218 EELELEYVKECKKTKGGKVWCLG-PVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIE 296 (488)
Q Consensus 218 ~~le~~~~~~~~~~~~~~~~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~ 296 (488)
..+|++++.. .+-++.||| |+...-+. ....++..+.+.-.+++++|-+--||-.+-=...+-.
T Consensus 369 fPFE~~~y~~----~gv~v~yVGHPL~d~i~~-----------~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv 433 (608)
T PRK01021 369 LPFEQNLFKD----SPLRTVYLGHPLVETISS-----------FSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTI 433 (608)
T ss_pred CccCHHHHHh----cCCCeEEECCcHHhhccc-----------CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 3456665542 467899999 77533110 0022333334443446679999999877632333444
Q ss_pred HHHHHh--cC--CCCeEEEEeCCCCCchhhhhhhhhHHHHHHhcCCC---eEEecccchhhhhccCCcccccccCCchhH
Q 011339 297 LGLGLE--AS--KKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRG---ILILGWAPQVLILSHPSIGGFLTHCSWNSS 369 (488)
Q Consensus 297 ~~~a~~--~~--~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~n---v~~~~~~pq~~ll~~~~~~~~IthgG~gs~ 369 (488)
++++.+ .. +.+++....... ..+.+.+.....+ +.+..--...++++.|++ .+.-.|. .+
T Consensus 434 ~l~aa~~~~l~~~l~fvvp~a~~~----------~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aT 500 (608)
T PRK01021 434 QVQAFLASSLASTHQLLVSSANPK----------YDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IV 500 (608)
T ss_pred HHHHHHHHHhccCeEEEEecCchh----------hHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HH
Confidence 555555 32 334444322221 1112222121112 122110012578999998 8887775 46
Q ss_pred HHHhhcCCCEeecC-cccccchhHHHHHHHh----------cceEEecccCCCCCCccccc--ccccCHHHHHHHHHHHH
Q 011339 370 LEGISAGVPLITWP-LYGDQFWNEKLIVQVL----------NIGVRIGVEVPLDFGEEEEI--GVLVKKEDVVKAINILM 436 (488)
Q Consensus 370 ~eal~~GvP~v~~P-~~~DQ~~na~rv~e~~----------G~G~~l~~~~~~~~~~~~~~--~~~~~~~~l~~ai~~~l 436 (488)
+|+...|+|||++= ...=-+.-++++. +. =+|..+=++ =. +...+++.|.+++ ++|
T Consensus 501 LEaAL~g~PmVV~YK~s~Lty~Iak~Lv-ki~i~yIsLpNIIagr~VvPE---------llqgQ~~~tpe~La~~l-~lL 569 (608)
T PRK01021 501 LETALNQTPTIVTCQLRPFDTFLAKYIF-KIILPAYSLPNIILGSTIFPE---------FIGGKKDFQPEEVAAAL-DIL 569 (608)
T ss_pred HHHHHhCCCEEEEEecCHHHHHHHHHHH-hccCCeeehhHHhcCCCcchh---------hcCCcccCCHHHHHHHH-HHh
Confidence 79999999998853 2212233455553 31 112222111 11 1358999999997 888
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 011339 437 DEGGETDDRRKRAREFQIMAKRATEETRSSSLMIKLLIQDIM 478 (488)
Q Consensus 437 ~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~ 478 (488)
.|++.++++++..+++++.+. +|- .+-+|..+.|-
T Consensus 570 ~d~~~r~~~~~~l~~lr~~Lg----~~~---~~~~~~~~~~~ 604 (608)
T PRK01021 570 KTSQSKEKQKDACRDLYQAMN----ESA---STMKECLSLIF 604 (608)
T ss_pred cCHHHHHHHHHHHHHHHHHhc----CCC---CCHHHHHHHHH
Confidence 888666677777777777652 232 34455555543
No 89
>PLN02275 transferase, transferring glycosyl groups
Probab=98.52 E-value=0.00063 Score=68.25 Aligned_cols=75 Identities=11% Similarity=0.184 Sum_probs=51.9
Q ss_pred CCeEEec-ccchhh---hhccCCcccccc----c--CCc-hhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEec
Q 011339 338 RGILILG-WAPQVL---ILSHPSIGGFLT----H--CSW-NSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIG 406 (488)
Q Consensus 338 ~nv~~~~-~~pq~~---ll~~~~~~~~It----h--gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~ 406 (488)
.|+.+.. |+|+.+ +|+.+|+ +|. . -|. +++.||+++|+|+|+... ..+...+ +.-+.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv-~~g~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELV-KDGKNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHc-cCCCCeEEEC
Confidence 5666654 788755 4888888 763 1 122 579999999999999754 3355566 4666787652
Q ss_pred ccCCCCCCcccccccccCHHHHHHHHHHHH
Q 011339 407 VEVPLDFGEEEEIGVLVKKEDVVKAINILM 436 (488)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l 436 (488)
+++++.++|.++|
T Consensus 359 -----------------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 -----------------SSSELADQLLELL 371 (371)
T ss_pred -----------------CHHHHHHHHHHhC
Confidence 4678888888764
No 90
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.52 E-value=0.00038 Score=74.57 Aligned_cols=95 Identities=22% Similarity=0.246 Sum_probs=63.9
Q ss_pred CCCeEEecccch-hhhhccCCcccccc---cCCc-hhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCCC
Q 011339 337 GRGILILGWAPQ-VLILSHPSIGGFLT---HCSW-NSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPL 411 (488)
Q Consensus 337 ~~nv~~~~~~pq-~~ll~~~~~~~~It---hgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~ 411 (488)
.++|++.+|.++ ..++..+++ +|. +.|. +++.||+.+|+|+|+.... .....+ +.-.-|..++..
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV-~dg~~GlLv~~~--- 642 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAV-QEGVTGLTLPAD--- 642 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHc-cCCCCEEEeCCC---
Confidence 467888888875 458888888 654 4565 6899999999999997753 344555 354468777654
Q ss_pred CCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHH
Q 011339 412 DFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRARE 451 (488)
Q Consensus 412 ~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~ 451 (488)
..+++++.+++.+++.+......+++++++
T Consensus 643 ----------d~~~~~La~aL~~ll~~l~~~~~l~~~ar~ 672 (694)
T PRK15179 643 ----------TVTAPDVAEALARIHDMCAADPGIARKAAD 672 (694)
T ss_pred ----------CCChHHHHHHHHHHHhChhccHHHHHHHHH
Confidence 356677888877776543222255555444
No 91
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.51 E-value=1.9e-05 Score=78.23 Aligned_cols=91 Identities=16% Similarity=0.232 Sum_probs=61.3
Q ss_pred cCCCeEEecccchh---hhhccCCccccccc----CCchhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEeccc
Q 011339 336 KGRGILILGWAPQV---LILSHPSIGGFLTH----CSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVE 408 (488)
Q Consensus 336 ~~~nv~~~~~~pq~---~ll~~~~~~~~Ith----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~ 408 (488)
...++.+.+++|+. .++..+++ +|.- |..+++.||+++|+|+|+.... .....+ +.. |..++.
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~-~~~--~~~~~~- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVA-GDA--ALYFDP- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----Ccccee-cCc--eeeeCC-
Confidence 35788899999875 46778887 5532 2345899999999999986542 222223 232 444443
Q ss_pred CCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHH
Q 011339 409 VPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAR 450 (488)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~ 450 (488)
-+.+++.++|.++++|++....+.++++
T Consensus 321 --------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~ 348 (365)
T cd03809 321 --------------LDPEALAAAIERLLEDPALREELRERGL 348 (365)
T ss_pred --------------CCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4789999999999998854444555444
No 92
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.47 E-value=0.0006 Score=75.08 Aligned_cols=96 Identities=15% Similarity=0.158 Sum_probs=65.0
Q ss_pred CCCeEEecccchhh---hhccCC--ccccccc---CCc-hhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecc
Q 011339 337 GRGILILGWAPQVL---ILSHPS--IGGFLTH---CSW-NSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGV 407 (488)
Q Consensus 337 ~~nv~~~~~~pq~~---ll~~~~--~~~~Ith---gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~ 407 (488)
.++|.+.+++++.+ ++..++ .++||.- =|. .++.||+++|+|+|+....+ ....+ +.-.-|..++.
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII-~~g~nGlLVdP 621 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIH-RVLDNGLLVDP 621 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHh-ccCCcEEEECC
Confidence 45777888887755 455442 1237764 344 48999999999999987533 33344 34445777765
Q ss_pred cCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Q 011339 408 EVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREF 452 (488)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l 452 (488)
-++++|+++|.++++|++..+.+.+++++.
T Consensus 622 ---------------~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~ 651 (1050)
T TIGR02468 622 ---------------HDQQAIADALLKLVADKQLWAECRQNGLKN 651 (1050)
T ss_pred ---------------CCHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 488999999999999885555566665544
No 93
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.47 E-value=7.7e-05 Score=73.72 Aligned_cols=215 Identities=17% Similarity=0.111 Sum_probs=109.5
Q ss_pred hhhhHHHHHHHHhhcCCceEEeC-CCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHHHHH
Q 011339 218 EELELEYVKECKKTKGGKVWCLG-PVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQMIE 296 (488)
Q Consensus 218 ~~le~~~~~~~~~~~~~~~~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~ 296 (488)
..+|++++.. .+-++.||| |+...-... ..+....+.+ -.+++++|.+--||-..-=...+-.
T Consensus 141 fPFE~~~y~~----~g~~~~~VGHPl~d~~~~~-----------~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~ 204 (373)
T PF02684_consen 141 FPFEPEFYKK----HGVPVTYVGHPLLDEVKPE-----------PDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPI 204 (373)
T ss_pred CcccHHHHhc----cCCCeEEECCcchhhhccC-----------CCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHH
Confidence 3455555443 346799999 775432111 0122333333 2236679999999877622222333
Q ss_pred HHHHHh---cC--CCCeEEEEeCCCCCchhhhhhhhhHHHHHHh--cCCCeEEec-ccchhhhhccCCcccccccCCchh
Q 011339 297 LGLGLE---AS--KKPFIWVIRGGNNTSKEIQEWLLEEKFEERV--KGRGILILG-WAPQVLILSHPSIGGFLTHCSWNS 368 (488)
Q Consensus 297 ~~~a~~---~~--~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~nv~~~~-~~pq~~ll~~~~~~~~IthgG~gs 368 (488)
++++.+ +. +.++++...... ..+.+.... ...++.+.- .-.-.++|..+++ .+.-.|. .
T Consensus 205 ~l~aa~~l~~~~p~l~fvvp~a~~~----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SGT-a 271 (373)
T PF02684_consen 205 FLEAAKLLKKQRPDLQFVVPVAPEV----------HEELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASGT-A 271 (373)
T ss_pred HHHHHHHHHHhCCCeEEEEecCCHH----------HHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCCH-H
Confidence 344433 22 345555443322 111111111 122222221 1234668888888 7766664 5
Q ss_pred HHHHhhcCCCEeecCc-ccccchhHHHHHHHhcceEEecccCCCC-CCcccccccccCHHHHHHHHHHHHccCcchHHHH
Q 011339 369 SLEGISAGVPLITWPL-YGDQFWNEKLIVQVLNIGVRIGVEVPLD-FGEEEEIGVLVKKEDVVKAINILMDEGGETDDRR 446 (488)
Q Consensus 369 ~~eal~~GvP~v~~P~-~~DQ~~na~rv~e~~G~G~~l~~~~~~~-~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~ 446 (488)
++|+...|+|||++=- ..=-+.-|+++. +... +.+..- .+. -=.++=.+...+++.|.+++.++|.|+ ..+
T Consensus 272 TLE~Al~g~P~Vv~Yk~~~lt~~iak~lv-k~~~-isL~Ni-ia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~----~~~ 344 (373)
T PF02684_consen 272 TLEAALLGVPMVVAYKVSPLTYFIAKRLV-KVKY-ISLPNI-IAGREVVPELIQEDATPENIAAELLELLENP----EKR 344 (373)
T ss_pred HHHHHHhCCCEEEEEcCcHHHHHHHHHhh-cCCE-eechhh-hcCCCcchhhhcccCCHHHHHHHHHHHhcCH----HHH
Confidence 7899999999987642 222334555553 3222 111100 000 001222345699999999999999998 444
Q ss_pred HHHHHHHHHHHHHHhcCCchHH
Q 011339 447 KRAREFQIMAKRATEETRSSSL 468 (488)
Q Consensus 447 ~~a~~l~~~~~~~~~~gg~~~~ 468 (488)
+..+...+.+++..+.|.++..
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~ 366 (373)
T PF02684_consen 345 KKQKELFREIRQLLGPGASSRA 366 (373)
T ss_pred HHHHHHHHHHHHhhhhccCCHH
Confidence 4444445555544555654433
No 94
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.40 E-value=0.00011 Score=73.35 Aligned_cols=131 Identities=23% Similarity=0.263 Sum_probs=80.3
Q ss_pred CCeEEEEeeCCcc--C-CChHHHHHHHHHHhcCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhc-CCCeEEeccc---c
Q 011339 275 PNSVVYVCLGSIC--N-LTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVK-GRGILILGWA---P 347 (488)
Q Consensus 275 ~~~vV~vs~Gs~~--~-~~~~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~nv~~~~~~---p 347 (488)
+++.|+|++=... . ...+.+..+++++...+..+++.+....-.... +-+.+..... .+|+.+.+-+ .
T Consensus 200 ~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~-----i~~~i~~~~~~~~~v~l~~~l~~~~ 274 (365)
T TIGR03568 200 DKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSRI-----INEAIEEYVNEHPNFRLFKSLGQER 274 (365)
T ss_pred CCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchH-----HHHHHHHHhcCCCCEEEECCCChHH
Confidence 3458888885543 2 445778889999987765666655432200101 1111112121 4678877654 4
Q ss_pred hhhhhccCCcccccccCCchhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEE-ecccCCCCCCcccccccccCHH
Q 011339 348 QVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVR-IGVEVPLDFGEEEEIGVLVKKE 426 (488)
Q Consensus 348 q~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~-l~~~~~~~~~~~~~~~~~~~~~ 426 (488)
...+++++++ +||-.+.+- .||.+.|+|.|.+- + |- |-.-.|.. +... .+++
T Consensus 275 ~l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~------R~-e~~~~g~nvl~vg--------------~~~~ 327 (365)
T TIGR03568 275 YLSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---T------RQ-KGRLRADSVIDVD--------------PDKE 327 (365)
T ss_pred HHHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---C------Cc-hhhhhcCeEEEeC--------------CCHH
Confidence 5668899999 999886555 99999999999774 2 22 22222322 2222 6889
Q ss_pred HHHHHHHHHHc
Q 011339 427 DVVKAINILMD 437 (488)
Q Consensus 427 ~l~~ai~~~l~ 437 (488)
+|.+++.++++
T Consensus 328 ~I~~a~~~~~~ 338 (365)
T TIGR03568 328 EIVKAIEKLLD 338 (365)
T ss_pred HHHHHHHHHhC
Confidence 99999999553
No 95
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.36 E-value=0.00071 Score=67.85 Aligned_cols=111 Identities=17% Similarity=0.135 Sum_probs=67.6
Q ss_pred CCCeEEeccc--ch---hhhhccCCcccccccC---Cc-hhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecc
Q 011339 337 GRGILILGWA--PQ---VLILSHPSIGGFLTHC---SW-NSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGV 407 (488)
Q Consensus 337 ~~nv~~~~~~--pq---~~ll~~~~~~~~Ithg---G~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~ 407 (488)
..++.+..+. ++ ..+++.+++ |+.-. |. .++.||+++|+|+|+.... .....+ +.-..|...+
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i-~~~~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQI-EDGETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----Cchhhc-ccCCceEEeC-
Confidence 3567777775 33 246777887 77533 33 4899999999999987643 233445 3545565442
Q ss_pred cCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 011339 408 EVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETRSSSLMIKLLIQDIM 478 (488)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~ 478 (488)
+.+.+..+|.++++|++..+.+.+++++.. .+.-+....++++++.+.
T Consensus 323 ----------------~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~-------~~~~s~~~~~~~~~~~~~ 370 (372)
T cd03792 323 ----------------TVEEAAVRILYLLRDPELRRKMGANAREHV-------RENFLITRHLKDYLYLIS 370 (372)
T ss_pred ----------------CcHHHHHHHHHHHcCHHHHHHHHHHHHHHH-------HHHcCHHHHHHHHHHHHH
Confidence 345677799999988744444545554432 223344455666655544
No 96
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.35 E-value=8.1e-05 Score=73.95 Aligned_cols=137 Identities=14% Similarity=0.180 Sum_probs=86.4
Q ss_pred EEeeCCccCCChHHHHHHHHHHhcCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEEecccchh---hhhccCC
Q 011339 280 YVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQV---LILSHPS 356 (488)
Q Consensus 280 ~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~---~ll~~~~ 356 (488)
++..|++.. ......++++++..+.++++ +|.+. ..+.+.. ....||.+.+++|+. .+++.++
T Consensus 198 il~~G~~~~--~K~~~~li~a~~~~~~~l~i-vG~g~----------~~~~l~~-~~~~~V~~~g~~~~~~~~~~~~~ad 263 (351)
T cd03804 198 YLSVGRLVP--YKRIDLAIEAFNKLGKRLVV-IGDGP----------ELDRLRA-KAGPNVTFLGRVSDEELRDLYARAR 263 (351)
T ss_pred EEEEEcCcc--ccChHHHHHHHHHCCCcEEE-EECCh----------hHHHHHh-hcCCCEEEecCCCHHHHHHHHHhCC
Confidence 455666654 22344566777766766554 34333 1122222 336799999999974 4788888
Q ss_pred cccccccCCch-hHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHH
Q 011339 357 IGGFLTHCSWN-SSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINIL 435 (488)
Q Consensus 357 ~~~~IthgG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~ 435 (488)
+-++-+.-|.| ++.||+++|+|+|+....+ ....+ +.-+.|..++. -+++.++++|.++
T Consensus 264 ~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i-~~~~~G~~~~~---------------~~~~~la~~i~~l 323 (351)
T cd03804 264 AFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETV-IDGVTGILFEE---------------QTVESLAAAVERF 323 (351)
T ss_pred EEEECCcCCCCchHHHHHHcCCCEEEeCCCC----Cccee-eCCCCEEEeCC---------------CCHHHHHHHHHHH
Confidence 83333444443 6789999999999986533 33445 35567877765 3788899999999
Q ss_pred HccC-cchHHHHHHHH
Q 011339 436 MDEG-GETDDRRKRAR 450 (488)
Q Consensus 436 l~~~-~~~~~~~~~a~ 450 (488)
++|+ ..++.++++++
T Consensus 324 ~~~~~~~~~~~~~~~~ 339 (351)
T cd03804 324 EKNEDFDPQAIRAHAE 339 (351)
T ss_pred HhCcccCHHHHHHHHH
Confidence 9987 33334444443
No 97
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.28 E-value=0.0016 Score=66.48 Aligned_cols=80 Identities=19% Similarity=0.103 Sum_probs=53.6
Q ss_pred CCCeEEecccchh---hhhccCCccccccc---CCc-hhHHHHhhcCCCEeecCcccccchhHHHHHH---HhcceEEec
Q 011339 337 GRGILILGWAPQV---LILSHPSIGGFLTH---CSW-NSSLEGISAGVPLITWPLYGDQFWNEKLIVQ---VLNIGVRIG 406 (488)
Q Consensus 337 ~~nv~~~~~~pq~---~ll~~~~~~~~Ith---gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e---~~G~G~~l~ 406 (488)
.++|.+..++|+. .+|..+++ +|+- =|. -++.||+++|+|+|+.-..+.- ...+ + .-..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv-~~~~~g~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIV-VPWDGGPTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hhee-eccCCCCceEEe-
Confidence 4688888998865 47778887 5532 222 3889999999999986543311 1112 1 22345432
Q ss_pred ccCCCCCCcccccccccCHHHHHHHHHHHHccC
Q 011339 407 VEVPLDFGEEEEIGVLVKKEDVVKAINILMDEG 439 (488)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~ 439 (488)
.++++++++|.++++++
T Consensus 377 ----------------~d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 ----------------STAEEYAEAIEKILSLS 393 (419)
T ss_pred ----------------CCHHHHHHHHHHHHhCC
Confidence 27899999999999876
No 98
>PLN02949 transferase, transferring glycosyl groups
Probab=98.26 E-value=0.0079 Score=61.93 Aligned_cols=113 Identities=15% Similarity=0.045 Sum_probs=66.8
Q ss_pred CCCeEEecccchhh---hhccCCcccccc---cCCch-hHHHHhhcCCCEeecCcccccchhHHHHHHH-hc-ceEEecc
Q 011339 337 GRGILILGWAPQVL---ILSHPSIGGFLT---HCSWN-SSLEGISAGVPLITWPLYGDQFWNEKLIVQV-LN-IGVRIGV 407 (488)
Q Consensus 337 ~~nv~~~~~~pq~~---ll~~~~~~~~It---hgG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~e~-~G-~G~~l~~ 407 (488)
.++|.+..++|+.+ +|..+++ +|+ +-|.| ++.||+++|+|+|+....+-- ...+.+. .| .|..
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV~~~~~g~tG~l--- 405 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIVLDEDGQQTGFL--- 405 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceeeecCCCCccccc---
Confidence 46788889987654 6777877 663 23443 799999999999998764310 0111000 01 1211
Q ss_pred cCCCCCCcccccccccCHHHHHHHHHHHHcc-CcchHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHc
Q 011339 408 EVPLDFGEEEEIGVLVKKEDVVKAINILMDE-GGETDDRRKRAREFQIMAKRATEETRSSSLMIKLLIQDIMQ 479 (488)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~-~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~ 479 (488)
. -+.++++++|.+++++ ++..+.+.+++++-.+ .-|.....+++.+.+..
T Consensus 406 ~--------------~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~--------~FS~e~~~~~~~~~i~~ 456 (463)
T PLN02949 406 A--------------TTVEEYADAILEVLRMRETERLEIAAAARKRAN--------RFSEQRFNEDFKDAIRP 456 (463)
T ss_pred C--------------CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--------HcCHHHHHHHHHHHHHH
Confidence 1 2788999999999984 3333345555544322 24445555565555543
No 99
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.24 E-value=1.3e-05 Score=79.18 Aligned_cols=249 Identities=16% Similarity=0.185 Sum_probs=124.2
Q ss_pred HHhhHHHHHHHHhcCCCCeEEEE--cCCC-cchHHHHHhcCCCcEEEecchHHHHHHHhhhcccccccccCCCCCccccC
Q 011339 104 RLLQLPLENLLKELTPKPSCIVS--DTCY-PWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSTVQENVTSNSDYLVVP 180 (488)
Q Consensus 104 ~~~~~~l~~~l~~~~~~pD~vv~--D~~~-~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 180 (488)
......+.++++. .+||+||+ |-+. .+++.+|..++||++.+-.. ... .....
T Consensus 53 ~~~~~~~~~~~~~--~~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaG-lRs---------------------~d~~~ 108 (346)
T PF02350_consen 53 GLAIIELADVLER--EKPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAG-LRS---------------------GDRTE 108 (346)
T ss_dssp HHHHHHHHHHHHH--HT-SEEEEETTSHHHHHHHHHHHHTT-EEEEES---------------------------S-TTS
T ss_pred HHHHHHHHHHHHh--cCCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCC-CCc---------------------cccCC
Confidence 3456777788888 79999875 4443 37788999999998876332 000 00111
Q ss_pred CCCCccccccccchHHHHHHHHHhhccccceEEEcCchhhhHHHHHHHHhh-c-CCceEEeCCCCCCCCCcchhhhhCCC
Q 011339 181 GLPDQIEMTKVREKWKDFGEMVLAADMKSYGIIINTFEELELEYVKECKKT-K-GGKVWCLGPVSLCNKQDIDKAERGKK 258 (488)
Q Consensus 181 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~-~-~~~~~~vGpl~~~~~~~~~~~~~~~~ 258 (488)
|+|. +..+.... .-++..+..+ +.+.+.+.+. . +.+++.||....+.-.. ....
T Consensus 109 g~~d------------e~~R~~i~--~la~lhf~~t-----~~~~~~L~~~G~~~~rI~~vG~~~~D~l~~----~~~~- 164 (346)
T PF02350_consen 109 GMPD------------EINRHAID--KLAHLHFAPT-----EEARERLLQEGEPPERIFVVGNPGIDALLQ----NKEE- 164 (346)
T ss_dssp STTH------------HHHHHHHH--HH-SEEEESS-----HHHHHHHHHTT--GGGEEE---HHHHHHHH----HHHT-
T ss_pred CCch------------hhhhhhhh--hhhhhhccCC-----HHHHHHHHhcCCCCCeEEEEChHHHHHHHH----hHHH-
Confidence 2222 22112111 2234445555 2333333322 1 25788899643331100 0000
Q ss_pred Ccccchhh--hcccCCCCCCeEEEEeeCCccCCC-h---HHHHHHHHHHhcC-CCCeEEEEeCCCCCchhhhhhhhhHHH
Q 011339 259 AAVDISEC--LNWLDSWPPNSVVYVCLGSICNLT-S---SQMIELGLGLEAS-KKPFIWVIRGGNNTSKEIQEWLLEEKF 331 (488)
Q Consensus 259 ~~~~~~~~--~~~l~~~~~~~vV~vs~Gs~~~~~-~---~~~~~~~~a~~~~-~~~~v~~~~~~~~~~~~~~~~~~p~~~ 331 (488)
..++. ..++.. .+++.++|++=...... + ..+..+++++... +..+||.+.... .. -..+
T Consensus 165 ---~~~~~~~~~i~~~-~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p---~~------~~~i 231 (346)
T PF02350_consen 165 ---IEEKYKNSGILQD-APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNP---RG------SDII 231 (346)
T ss_dssp ---TCC-HHHHHHHHC-TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-H---HH------HHHH
T ss_pred ---HhhhhhhHHHHhc-cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCc---hH------HHHH
Confidence 11111 122112 46679999985555544 3 3344556666555 667888876332 00 0111
Q ss_pred HHHhcC-CCeEEecccc---hhhhhccCCcccccccCCchhHH-HHhhcCCCEeecCcccccchhHHHHHHHhcceEEec
Q 011339 332 EERVKG-RGILILGWAP---QVLILSHPSIGGFLTHCSWNSSL-EGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIG 406 (488)
Q Consensus 332 ~~~~~~-~nv~~~~~~p---q~~ll~~~~~~~~IthgG~gs~~-eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~ 406 (488)
.+.... +|+++.+-++ ...+|+++++ +|+..| ++. ||.+.|+|.|.+ .++..|- |-...|..+-
T Consensus 232 ~~~l~~~~~v~~~~~l~~~~~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~i------R~~geRq-e~r~~~~nvl 300 (346)
T PF02350_consen 232 IEKLKKYDNVRLIEPLGYEEYLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNI------RDSGERQ-EGRERGSNVL 300 (346)
T ss_dssp HHHHTT-TTEEEE----HHHHHHHHHHESE--EEESSH--HHHHHGGGGT--EEEC------SSS-S-H-HHHHTTSEEE
T ss_pred HHHhcccCCEEEECCCCHHHHHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEe------cCCCCCH-HHHhhcceEE
Confidence 121111 4888876554 5668899999 999999 566 999999999999 3334443 2333333322
Q ss_pred ccCCCCCCcccccccccCHHHHHHHHHHHHcc
Q 011339 407 VEVPLDFGEEEEIGVLVKKEDVVKAINILMDE 438 (488)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~ 438 (488)
.. .++++|.+++.+++++
T Consensus 301 v~--------------~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 301 VG--------------TDPEAIIQAIEKALSD 318 (346)
T ss_dssp ET--------------SSHHHHHHHHHHHHH-
T ss_pred eC--------------CCHHHHHHHHHHHHhC
Confidence 33 7999999999999975
No 100
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.24 E-value=0.0085 Score=64.71 Aligned_cols=93 Identities=15% Similarity=0.119 Sum_probs=57.1
Q ss_pred CCCeEEeccc-ch---hhhhcc-CC-cccccc---cCCc-hhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEec
Q 011339 337 GRGILILGWA-PQ---VLILSH-PS-IGGFLT---HCSW-NSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIG 406 (488)
Q Consensus 337 ~~nv~~~~~~-pq---~~ll~~-~~-~~~~It---hgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~ 406 (488)
.++|.+.++. +. ..++.+ ++ .++||. .=|. -++.||+++|+|+|+.-.. .....+ +.-.-|..++
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~G----G~~EiV-~dg~tGfLVd 692 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFG----GPLEII-QDGVSGFHID 692 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHh-cCCCcEEEeC
Confidence 3567766653 32 335542 22 123664 2333 4899999999999986553 455566 3555687776
Q ss_pred ccCCCCCCcccccccccCHHHHHHHHHHHH----ccCcchHHHHHHH
Q 011339 407 VEVPLDFGEEEEIGVLVKKEDVVKAINILM----DEGGETDDRRKRA 449 (488)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l----~~~~~~~~~~~~a 449 (488)
. -++++++++|.+++ +|++..+.+.+++
T Consensus 693 p---------------~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a 724 (784)
T TIGR02470 693 P---------------YHGEEAAEKIVDFFEKCDEDPSYWQKISQGG 724 (784)
T ss_pred C---------------CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5 47888999998876 5663333444443
No 101
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.23 E-value=0.0013 Score=66.96 Aligned_cols=73 Identities=12% Similarity=0.104 Sum_probs=50.9
Q ss_pred EecccchhhhhccCCcccccccC----CchhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCCCCCCccc
Q 011339 342 ILGWAPQVLILSHPSIGGFLTHC----SWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEE 417 (488)
Q Consensus 342 ~~~~~pq~~ll~~~~~~~~Ithg----G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~ 417 (488)
+..+.+..+++...++ ||.-+ =..++.||+++|+|+|+.-..+ + ..+ .+-+-|...
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v-~~~~ng~~~------------ 347 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFF-KQFPNCRTY------------ 347 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-cee-ecCCceEec------------
Confidence 4455666678888887 88764 3468999999999999987543 2 333 243334333
Q ss_pred ccccccCHHHHHHHHHHHHccC
Q 011339 418 EIGVLVKKEDVVKAINILMDEG 439 (488)
Q Consensus 418 ~~~~~~~~~~l~~ai~~~l~~~ 439 (488)
-+.+++.+++.++|+++
T Consensus 348 -----~~~~~~a~ai~~~l~~~ 364 (462)
T PLN02846 348 -----DDGKGFVRATLKALAEE 364 (462)
T ss_pred -----CCHHHHHHHHHHHHccC
Confidence 25779999999999854
No 102
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.21 E-value=0.0026 Score=65.92 Aligned_cols=133 Identities=16% Similarity=0.200 Sum_probs=71.1
Q ss_pred EEEEeeCCccC-CChHHHHHHHHHHhcCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHh--cCCCeEE-ecccch--hhh
Q 011339 278 VVYVCLGSICN-LTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERV--KGRGILI-LGWAPQ--VLI 351 (488)
Q Consensus 278 vV~vs~Gs~~~-~~~~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~nv~~-~~~~pq--~~l 351 (488)
.+++..|.+.. ...+.+...+.-+...+.++++. +.+. . . +.+.++... .+.++.+ ..|-.+ ..+
T Consensus 283 ~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lviv-G~g~--~-~-----~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~ 353 (466)
T PRK00654 283 PLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLL-GTGD--P-E-----LEEAFRALAARYPGKVGVQIGYDEALAHRI 353 (466)
T ss_pred cEEEEeeccccccChHHHHHHHHHHHhcCCEEEEE-ecCc--H-H-----HHHHHHHHHHHCCCcEEEEEeCCHHHHHHH
Confidence 45566677665 23333333333333335565554 3332 0 1 112222211 1344443 455322 246
Q ss_pred hccCCcccccc---cCCch-hHHHHhhcCCCEeecCccc--ccchhHHHHHHHhcceEEecccCCCCCCcccccccccCH
Q 011339 352 LSHPSIGGFLT---HCSWN-SSLEGISAGVPLITWPLYG--DQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKK 425 (488)
Q Consensus 352 l~~~~~~~~It---hgG~g-s~~eal~~GvP~v~~P~~~--DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~ 425 (488)
++.+++ +|. +-|+| +.+||+++|+|.|+....+ |.-.+...- +..+-|..++. -++
T Consensus 354 ~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~-~~~~~G~lv~~---------------~d~ 415 (466)
T PRK00654 354 YAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPE-DGEATGFVFDD---------------FNA 415 (466)
T ss_pred HhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCC-CCCCceEEeCC---------------CCH
Confidence 788888 664 33554 8889999999999875532 211111111 12266777765 488
Q ss_pred HHHHHHHHHHHc
Q 011339 426 EDVVKAINILMD 437 (488)
Q Consensus 426 ~~l~~ai~~~l~ 437 (488)
+++.++|.++++
T Consensus 416 ~~la~~i~~~l~ 427 (466)
T PRK00654 416 EDLLRALRRALE 427 (466)
T ss_pred HHHHHHHHHHHH
Confidence 999999999886
No 103
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.19 E-value=0.00093 Score=64.86 Aligned_cols=226 Identities=13% Similarity=0.080 Sum_probs=114.3
Q ss_pred chhhhHHHHHHHHhhcCCceEEeC-CCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCCChHH--
Q 011339 217 FEELELEYVKECKKTKGGKVWCLG-PVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNLTSSQ-- 293 (488)
Q Consensus 217 ~~~le~~~~~~~~~~~~~~~~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~-- 293 (488)
+..+|+.+++.. +-..+||| |+....+. ...++...+-+....+++++.+--||-.+--...
T Consensus 143 ilPFE~~~y~k~----g~~~~yVGHpl~d~i~~-----------~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~ 207 (381)
T COG0763 143 ILPFEPAFYDKF----GLPCTYVGHPLADEIPL-----------LPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLP 207 (381)
T ss_pred ecCCCHHHHHhc----CCCeEEeCChhhhhccc-----------cccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHH
Confidence 334666666543 23489999 76433211 1123344444544456779999999988721112
Q ss_pred -HHHHHHHHh-cC-CCCeEEEEeCCCCCchhhhhhhhhHHHHHHhcCCCe-EEeccc-ch--hhhhccCCcccccccCCc
Q 011339 294 -MIELGLGLE-AS-KKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGI-LILGWA-PQ--VLILSHPSIGGFLTHCSW 366 (488)
Q Consensus 294 -~~~~~~a~~-~~-~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv-~~~~~~-pq--~~ll~~~~~~~~IthgG~ 366 (488)
+...++.++ .. +.+|+.-+.... . +.........+. ...-++ ++ ..++..+++ .+.-+|.
T Consensus 208 ~f~~a~~~l~~~~~~~~~vlp~~~~~--~---------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT 274 (381)
T COG0763 208 PFVQAAQELKARYPDLKFVLPLVNAK--Y---------RRIIEEALKWEVAGLSLILIDGEKRKAFAAADA--ALAASGT 274 (381)
T ss_pred HHHHHHHHHHhhCCCceEEEecCcHH--H---------HHHHHHHhhccccCceEEecCchHHHHHHHhhH--HHHhccH
Confidence 222223333 22 346665543322 0 011111111111 011122 22 236777777 7777775
Q ss_pred hhHHHHhhcCCCEeecCcc-cccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHH
Q 011339 367 NSSLEGISAGVPLITWPLY-GDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDR 445 (488)
Q Consensus 367 gs~~eal~~GvP~v~~P~~-~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~ 445 (488)
. ++|+..+|+|||+.=-. .=-+.-+++.. .....--...- .-..=.++-++...+++.|.+++.+++.|+...+.+
T Consensus 275 ~-tLE~aL~g~P~Vv~Yk~~~it~~iak~lv-k~~yisLpNIi-~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~ 351 (381)
T COG0763 275 A-TLEAALAGTPMVVAYKVKPITYFIAKRLV-KLPYVSLPNIL-AGREIVPELIQEDCTPENLARALEELLLNGDRREAL 351 (381)
T ss_pred H-HHHHHHhCCCEEEEEeccHHHHHHHHHhc-cCCcccchHHh-cCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHH
Confidence 3 57999999999875211 00112233332 22211000000 000001112234689999999999999998555667
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 011339 446 RKRAREFQIMAKRATEETRSSSLMIKLLIQDI 477 (488)
Q Consensus 446 ~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~ 477 (488)
.+..+.|++.++ ++++++.+.+.+++.+
T Consensus 352 ~~~~~~l~~~l~----~~~~~e~aA~~vl~~~ 379 (381)
T COG0763 352 KEKFRELHQYLR----EDPASEIAAQAVLELL 379 (381)
T ss_pred HHHHHHHHHHHc----CCcHHHHHHHHHHHHh
Confidence 777777776654 4456666666666554
No 104
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.15 E-value=6.6e-06 Score=68.01 Aligned_cols=116 Identities=18% Similarity=0.150 Sum_probs=78.4
Q ss_pred EEEEeeCCccCCChHHHH-----HHHHHHhcCCC-CeEEEEeCCCCCchhhhhhhhhHHHHHHhcCC--CeEEecccch-
Q 011339 278 VVYVCLGSICNLTSSQMI-----ELGLGLEASKK-PFIWVIRGGNNTSKEIQEWLLEEKFEERVKGR--GILILGWAPQ- 348 (488)
Q Consensus 278 vV~vs~Gs~~~~~~~~~~-----~~~~a~~~~~~-~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--nv~~~~~~pq- 348 (488)
.+|||-||... ++.+. +.++.+.+.+. +.|..++.+. .. .++..+...... .+...+|.|-
T Consensus 5 ~vFVTVGtT~F--d~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~-~~-------~~d~~~~~~k~~gl~id~y~f~psl 74 (170)
T KOG3349|consen 5 TVFVTVGTTSF--DDLISCVLSEEFLQELQKRGFTKLIIQIGRGQ-PF-------FGDPIDLIRKNGGLTIDGYDFSPSL 74 (170)
T ss_pred EEEEEeccccH--HHHHHHHcCHHHHHHHHHcCccEEEEEecCCc-cC-------CCCHHHhhcccCCeEEEEEecCccH
Confidence 79999999884 22222 34456666664 6778888773 10 222222111122 3344677886
Q ss_pred hhhhccCCcccccccCCchhHHHHhhcCCCEeecCc----ccccchhHHHHHHHhcceEEec
Q 011339 349 VLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPL----YGDQFWNEKLIVQVLNIGVRIG 406 (488)
Q Consensus 349 ~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~----~~DQ~~na~rv~e~~G~G~~l~ 406 (488)
.+..+.+++ +|+|+|.||++|.|..|+|.|+++- -..|-.-|..++ +.|.=..-.
T Consensus 75 ~e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~-~egyL~~C~ 133 (170)
T KOG3349|consen 75 TEDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLA-EEGYLYYCT 133 (170)
T ss_pred HHHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHH-hcCcEEEee
Confidence 667777888 9999999999999999999999994 346888899885 777654443
No 105
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.09 E-value=0.0063 Score=63.17 Aligned_cols=129 Identities=12% Similarity=0.096 Sum_probs=72.3
Q ss_pred EEEEeeCCccC-CChHHHHHHHHHHhcCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHh--cCCCeEEecccchh---hh
Q 011339 278 VVYVCLGSICN-LTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERV--KGRGILILGWAPQV---LI 351 (488)
Q Consensus 278 vV~vs~Gs~~~-~~~~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~nv~~~~~~pq~---~l 351 (488)
.+++..|.+.. ...+.+...+..+...+.++++. +.+. . . ..+.+.... ...++.+....+.. .+
T Consensus 292 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~-G~g~--~-~-----~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~ 362 (473)
T TIGR02095 292 PLFGVISRLTQQKGVDLLLAALPELLELGGQLVVL-GTGD--P-E-----LEEALRELAERYPGNVRVIIGYDEALAHLI 362 (473)
T ss_pred CEEEEEecCccccChHHHHHHHHHHHHcCcEEEEE-CCCC--H-H-----HHHHHHHHHHHCCCcEEEEEcCCHHHHHHH
Confidence 35566677665 33344444444443334454443 3321 0 1 112222211 23466655444443 47
Q ss_pred hccCCccccccc---CCch-hHHHHhhcCCCEeecCcccccchhHHHHHHHh------cceEEecccCCCCCCccccccc
Q 011339 352 LSHPSIGGFLTH---CSWN-SSLEGISAGVPLITWPLYGDQFWNEKLIVQVL------NIGVRIGVEVPLDFGEEEEIGV 421 (488)
Q Consensus 352 l~~~~~~~~Ith---gG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~------G~G~~l~~~~~~~~~~~~~~~~ 421 (488)
++.+++ +|.- -|.| +.+||+++|+|+|+....+ ....+ +.- +.|..++.
T Consensus 363 ~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v-~~~~~~~~~~~G~l~~~-------------- 421 (473)
T TIGR02095 363 YAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTV-VDGDPEAESGTGFLFEE-------------- 421 (473)
T ss_pred HHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceE-ecCCCCCCCCceEEeCC--------------
Confidence 778888 6632 2444 7889999999999876533 22222 122 66777754
Q ss_pred ccCHHHHHHHHHHHHc
Q 011339 422 LVKKEDVVKAINILMD 437 (488)
Q Consensus 422 ~~~~~~l~~ai~~~l~ 437 (488)
-+++++.++|.+++.
T Consensus 422 -~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 422 -YDPGALLAALSRALR 436 (473)
T ss_pred -CCHHHHHHHHHHHHH
Confidence 488999999999886
No 106
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.03 E-value=0.0038 Score=64.83 Aligned_cols=84 Identities=13% Similarity=0.063 Sum_probs=52.5
Q ss_pred CCCeEEecccchh---hhhccCCccccccc---CCc-hhHHHHhhcCCCEeecCccc--ccchhHHHHHHHhcceEEecc
Q 011339 337 GRGILILGWAPQV---LILSHPSIGGFLTH---CSW-NSSLEGISAGVPLITWPLYG--DQFWNEKLIVQVLNIGVRIGV 407 (488)
Q Consensus 337 ~~nv~~~~~~pq~---~ll~~~~~~~~Ith---gG~-gs~~eal~~GvP~v~~P~~~--DQ~~na~rv~e~~G~G~~l~~ 407 (488)
..|+++....++. .+++.+++ +|.- -|. .+.+||+++|+|+|+....+ |--.+.... ...|.|..++.
T Consensus 350 ~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~-~~~~~G~~~~~ 426 (476)
T cd03791 350 PGRVAVLIGYDEALAHLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNED-TGEGTGFVFEG 426 (476)
T ss_pred CCcEEEEEeCCHHHHHHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCC-CCCCCeEEeCC
Confidence 4576654333332 46777887 6642 233 37789999999999876543 222111111 13446877765
Q ss_pred cCCCCCCcccccccccCHHHHHHHHHHHHcc
Q 011339 408 EVPLDFGEEEEIGVLVKKEDVVKAINILMDE 438 (488)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~ 438 (488)
-+++++.+++.+++++
T Consensus 427 ---------------~~~~~l~~~i~~~l~~ 442 (476)
T cd03791 427 ---------------YNADALLAALRRALAL 442 (476)
T ss_pred ---------------CCHHHHHHHHHHHHHH
Confidence 4789999999998863
No 107
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=98.00 E-value=0.0011 Score=66.26 Aligned_cols=100 Identities=15% Similarity=0.142 Sum_probs=70.2
Q ss_pred CCCeEEecccch-hhhhccCCcccccccC-C-chhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCCCCC
Q 011339 337 GRGILILGWAPQ-VLILSHPSIGGFLTHC-S-WNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPLDF 413 (488)
Q Consensus 337 ~~nv~~~~~~pq-~~ll~~~~~~~~Ithg-G-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~ 413 (488)
..++.+.++.++ ..++..+++-++.++. | ..++.||+++|+|+|+..... .....+ +.-..|..++.
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v-~~~~~G~lv~~------ 329 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEII-EDGENGYLVPK------ 329 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHc-ccCCCceEeCC------
Confidence 456777777665 4588899985555543 3 458999999999999965431 233445 35556777754
Q ss_pred CcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHH
Q 011339 414 GEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIM 455 (488)
Q Consensus 414 ~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~ 455 (488)
-+.++++++|.++++|++..+.+.+++++..+.
T Consensus 330 ---------~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~ 362 (372)
T cd04949 330 ---------GDIEALAEAIIELLNDPKLLQKFSEAAYENAER 362 (372)
T ss_pred ---------CcHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 489999999999999886556666666665443
No 108
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.97 E-value=0.021 Score=57.34 Aligned_cols=79 Identities=22% Similarity=0.184 Sum_probs=52.9
Q ss_pred CCCeEEecccchhh---hhccCCccccc------ccCCc-hhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEec
Q 011339 337 GRGILILGWAPQVL---ILSHPSIGGFL------THCSW-NSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIG 406 (488)
Q Consensus 337 ~~nv~~~~~~pq~~---ll~~~~~~~~I------thgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~ 406 (488)
.+||+..+++|+.+ .+..+++.++- +.++. +.+.|++++|+|+|+.++ ...+ +..+ |..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~-~~~~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVR-RYED-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHH-hhcC-cEEEe
Confidence 47999999998655 57788873332 22333 458999999999998763 2223 2333 33332
Q ss_pred ccCCCCCCcccccccccCHHHHHHHHHHHHccC
Q 011339 407 VEVPLDFGEEEEIGVLVKKEDVVKAINILMDEG 439 (488)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~ 439 (488)
. -+.+++.++|.+++.++
T Consensus 324 -~--------------~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 324 -A--------------DDPEEFVAAIEKALLED 341 (373)
T ss_pred -C--------------CCHHHHHHHHHHHHhcC
Confidence 2 37999999999977654
No 109
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.96 E-value=0.0019 Score=67.10 Aligned_cols=93 Identities=16% Similarity=0.176 Sum_probs=65.0
Q ss_pred CCCeEEecccchhhhhccCCccccccc----CCchhHHHHhhcCCCEeecCcccccchhHHHHHHHh-----c-ceEEec
Q 011339 337 GRGILILGWAPQVLILSHPSIGGFLTH----CSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVL-----N-IGVRIG 406 (488)
Q Consensus 337 ~~nv~~~~~~pq~~ll~~~~~~~~Ith----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~-----G-~G~~l~ 406 (488)
..||.+.+...-..+++.+++ +|.- |--+++.||+++|+|+|+... ......+ +.. | .|..++
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd~----g~~~elv-~~~~~~~~g~~G~lv~ 425 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATDV----GSCRELI-EGADDEALGPAGEVVP 425 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECCC----CChHHHh-cCCcccccCCceEEEC
Confidence 468888886666778888888 5533 223689999999999999543 4444555 352 2 566665
Q ss_pred ccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHH
Q 011339 407 VEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRARE 451 (488)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~ 451 (488)
. .+.+++.++|.++++|++..+.+.+++++
T Consensus 426 ~---------------~d~~~la~ai~~ll~~~~~~~~~~~~a~~ 455 (475)
T cd03813 426 P---------------ADPEALARAILRLLKDPELRRAMGEAGRK 455 (475)
T ss_pred C---------------CCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4 48999999999999988544455555543
No 110
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.92 E-value=0.0077 Score=62.66 Aligned_cols=102 Identities=12% Similarity=0.128 Sum_probs=65.3
Q ss_pred CCCeEEecccchhhhhccCCcccccc---cCCc-hhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEeccc-CCC
Q 011339 337 GRGILILGWAPQVLILSHPSIGGFLT---HCSW-NSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVE-VPL 411 (488)
Q Consensus 337 ~~nv~~~~~~pq~~ll~~~~~~~~It---hgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~-~~~ 411 (488)
..+|...++.+...++..+++ +|. .=|. .+++||+++|+|+|+....+ .+...+ +.-.-|..++.. ++
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI-~~g~nG~lv~~~~~~- 447 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFI-EDNKNGYLIPIDEEE- 447 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHc-cCCCCEEEEeCCccc-
Confidence 456788888888889999998 664 3344 58999999999999976531 233444 343446666521 00
Q ss_pred CCCcccccccccC-HHHHHHHHHHHHccCcchHHHHHHHHHHHH
Q 011339 412 DFGEEEEIGVLVK-KEDVVKAINILMDEGGETDDRRKRAREFQI 454 (488)
Q Consensus 412 ~~~~~~~~~~~~~-~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~ 454 (488)
+..-+ .++|+++|.++++ ++..+.+.+++++.++
T Consensus 448 --------~d~~~~~~~la~~I~~ll~-~~~~~~~~~~a~~~a~ 482 (500)
T TIGR02918 448 --------DDEDQIITALAEKIVEYFN-SNDIDAFHEYSYQIAE 482 (500)
T ss_pred --------cchhHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHH
Confidence 00012 7889999999995 4334455666655443
No 111
>PLN00142 sucrose synthase
Probab=97.90 E-value=0.0099 Score=64.28 Aligned_cols=70 Identities=11% Similarity=0.123 Sum_probs=45.5
Q ss_pred cccc---CCch-hHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHH
Q 011339 360 FLTH---CSWN-SSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINIL 435 (488)
Q Consensus 360 ~Ith---gG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~ 435 (488)
||.- -|.| ++.||+++|+|+|+... ......+ +.-.-|..++.. ++++++++|.++
T Consensus 670 fVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV-~dG~tG~LV~P~---------------D~eaLA~aI~~l 729 (815)
T PLN00142 670 FVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEII-VDGVSGFHIDPY---------------HGDEAANKIADF 729 (815)
T ss_pred EEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHh-cCCCcEEEeCCC---------------CHHHHHHHHHHH
Confidence 6643 4554 89999999999998655 3345555 354458777653 677888887654
Q ss_pred ----HccCcchHHHHHHH
Q 011339 436 ----MDEGGETDDRRKRA 449 (488)
Q Consensus 436 ----l~~~~~~~~~~~~a 449 (488)
++|++..+.+.+++
T Consensus 730 LekLl~Dp~lr~~mg~~A 747 (815)
T PLN00142 730 FEKCKEDPSYWNKISDAG 747 (815)
T ss_pred HHHhcCCHHHHHHHHHHH
Confidence 46774444444444
No 112
>PLN02316 synthase/transferase
Probab=97.84 E-value=0.089 Score=58.63 Aligned_cols=115 Identities=15% Similarity=0.049 Sum_probs=70.4
Q ss_pred CCeEEecccchh---hhhccCCccccccc---CCc-hhHHHHhhcCCCEeecCccc--ccchhH----HHHHHH---hcc
Q 011339 338 RGILILGWAPQV---LILSHPSIGGFLTH---CSW-NSSLEGISAGVPLITWPLYG--DQFWNE----KLIVQV---LNI 401 (488)
Q Consensus 338 ~nv~~~~~~pq~---~ll~~~~~~~~Ith---gG~-gs~~eal~~GvP~v~~P~~~--DQ~~na----~rv~e~---~G~ 401 (488)
.++.+....+.. .+++.+++ ||.- =|+ .+.+||+++|+|.|+....+ |.-... .+. +. -+-
T Consensus 900 ~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~-~~~g~~~t 976 (1036)
T PLN02316 900 DRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERA-QAQGLEPN 976 (1036)
T ss_pred CeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccc-cccccCCc
Confidence 456654444442 57888887 7743 233 48899999999998865533 221111 111 01 234
Q ss_pred eEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 011339 402 GVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETRSSSLMIKLLIQD 476 (488)
Q Consensus 402 G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~ 476 (488)
|...+. .+++.|..+|.+++. .|.+....+++..+++++.--|-...+.+.++.
T Consensus 977 Gflf~~---------------~d~~aLa~AL~raL~------~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~L 1030 (1036)
T PLN02316 977 GFSFDG---------------ADAAGVDYALNRAIS------AWYDGRDWFNSLCKRVMEQDWSWNRPALDYMEL 1030 (1036)
T ss_pred eEEeCC---------------CCHHHHHHHHHHHHh------hhhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 666654 589999999999996 344455556666666666666666666665544
No 113
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.83 E-value=0.00055 Score=69.56 Aligned_cols=153 Identities=16% Similarity=0.217 Sum_probs=89.9
Q ss_pred eEEEEeeCCccCC-ChHHHHHHHHHHhcC--CCCeEEEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEEecccchhh---
Q 011339 277 SVVYVCLGSICNL-TSSQMIELGLGLEAS--KKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVL--- 350 (488)
Q Consensus 277 ~vV~vs~Gs~~~~-~~~~~~~~~~a~~~~--~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~--- 350 (488)
+..+++.|.+... ..+.+...+..+... +.++.|.+-+.......+.+ .........++.+.+|+++.+
T Consensus 230 ~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~~~~l~~-----~~~~~~~~~~V~f~G~v~~~e~~~ 304 (407)
T cd04946 230 TLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGPLEDTLKE-----LAESKPENISVNFTGELSNSEVYK 304 (407)
T ss_pred CEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCchHHHHHHH-----HHHhcCCCceEEEecCCChHHHHH
Confidence 3556777877652 233333333333222 24677765444301111111 111111235788899999765
Q ss_pred hhccCCcccccccCC----chhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHH
Q 011339 351 ILSHPSIGGFLTHCS----WNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKE 426 (488)
Q Consensus 351 ll~~~~~~~~IthgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~ 426 (488)
++..++++++|...- -.+++||+++|+|+|+... ......+ +..+.|..+... -+.+
T Consensus 305 ~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v----gg~~e~i-~~~~~G~l~~~~--------------~~~~ 365 (407)
T cd04946 305 LYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GGTPEIV-DNGGNGLLLSKD--------------PTPN 365 (407)
T ss_pred HHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC----CCcHHHh-cCCCcEEEeCCC--------------CCHH
Confidence 445444444765442 3589999999999998654 3355566 355578777653 5889
Q ss_pred HHHHHHHHHHccCcchHHHHHHHHHHH
Q 011339 427 DVVKAINILMDEGGETDDRRKRAREFQ 453 (488)
Q Consensus 427 ~l~~ai~~~l~~~~~~~~~~~~a~~l~ 453 (488)
++.++|.++++|++..+.+.+++++.-
T Consensus 366 ~la~~I~~ll~~~~~~~~m~~~ar~~~ 392 (407)
T cd04946 366 ELVSSLSKFIDNEEEYQTMREKAREKW 392 (407)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 999999999998855555555555543
No 114
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.79 E-value=0.0085 Score=58.47 Aligned_cols=326 Identities=16% Similarity=0.119 Sum_probs=167.7
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCC-CeEEEEeCCcch-hhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCc
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHG-AAITIVTTPANA-ARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCE 85 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rG-H~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 85 (488)
+|+||+++ +++.=.+.-+.+|.+++.+.+ .+..++.+.... ..+-... ++...++.|..+ +
T Consensus 2 ~~~Kv~~I-~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~---------le~~~i~~pdy~--L----- 64 (383)
T COG0381 2 KMLKVLTI-FGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQV---------LELFGIRKPDYD--L----- 64 (383)
T ss_pred CceEEEEE-EecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHH---------HHHhCCCCCCcc--h-----
Confidence 56777655 568888888999999999996 666666555443 1232221 111112111111 0
Q ss_pred cccCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEE--cCCC-cchHHHHHhcCCCcEEEecchHHHHHHHhhhc
Q 011339 86 NFDMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVS--DTCY-PWTVDTAARFNIPRISFHGFSCFCLLCLYNLH 162 (488)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~--D~~~-~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~ 162 (488)
....+. ..+.+....+...+.+++.+ .+||+|++ |..+ .++..+|...+||+..+=.+--
T Consensus 65 -~i~~~~----~tl~~~t~~~i~~~~~vl~~--~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlR---------- 127 (383)
T COG0381 65 -NIMKPG----QTLGEITGNIIEGLSKVLEE--EKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLR---------- 127 (383)
T ss_pred -hccccC----CCHHHHHHHHHHHHHHHHHh--hCCCEEEEeCCcchHHHHHHHHHHhCCceEEEecccc----------
Confidence 000000 11222333456778888888 89999985 4433 3668899999999988622210
Q ss_pred ccccccccCCCCCccccCCCCCccccccccchHHHHHHHHHhhccccceEEEcCchhhhHHHHHHH-HhhcCC-ceEEeC
Q 011339 163 TSTVQENVTSNSDYLVVPGLPDQIEMTKVREKWKDFGEMVLAADMKSYGIIINTFEELELEYVKEC-KKTKGG-KVWCLG 240 (488)
Q Consensus 163 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~-~~~~~~-~~~~vG 240 (488)
.-..+ +|.. +.+ ++... -++..+.++ .....++ +.-.++ +++.+|
T Consensus 128 -----------t~~~~---~PEE---------~NR---~l~~~--~S~~hfapt-----e~ar~nLl~EG~~~~~IfvtG 174 (383)
T COG0381 128 -----------TGDLY---FPEE---------INR---RLTSH--LSDLHFAPT-----EIARKNLLREGVPEKRIFVTG 174 (383)
T ss_pred -----------cCCCC---CcHH---------HHH---HHHHH--hhhhhcCCh-----HHHHHHHHHcCCCccceEEeC
Confidence 00111 2220 000 00000 011112222 1111111 122333 466677
Q ss_pred CCCCCCCCcchhhhhCCCCcccchhhhcc-cCCCCCCeEEEEeeCCccCCChHHHHHHHH----HHhcCCCCeEEEEeCC
Q 011339 241 PVSLCNKQDIDKAERGKKAAVDISECLNW-LDSWPPNSVVYVCLGSICNLTSSQMIELGL----GLEASKKPFIWVIRGG 315 (488)
Q Consensus 241 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~----a~~~~~~~~v~~~~~~ 315 (488)
-...+--.. .+... . .+.+.... +.. +.+..+.+|+=-..+.. +.+..+++ ..+.. ..+...+.-.
T Consensus 175 nt~iDal~~----~~~~~-~-~~~~~~~~~~~~-~~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~-~~~~viyp~H 245 (383)
T COG0381 175 NTVIDALLN----TRDRV-L-EDSKILAKGLDD-KDKKYILVTAHRRENVG-EPLEEICEALREIAEEY-PDVIVIYPVH 245 (383)
T ss_pred ChHHHHHHH----HHhhh-c-cchhhHHhhhcc-ccCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhC-CCceEEEeCC
Confidence 432220000 00000 0 11112211 222 23448888865444433 33444444 33344 2334444433
Q ss_pred CCCchhhhhhhhhHHHHHHhcCCCeEEe---cccchhhhhccCCcccccccCCchhHHHHhhcCCCEeecCcccccchhH
Q 011339 316 NNTSKEIQEWLLEEKFEERVKGRGILIL---GWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQFWNE 392 (488)
Q Consensus 316 ~~~~~~~~~~~~p~~~~~~~~~~nv~~~---~~~pq~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~DQ~~na 392 (488)
.+ ..+.+ +. +..-....|+.+. +|.+...+++++.+ ++|-.|. -.-||-..|+|.+++=...++|.
T Consensus 246 ~~--~~v~e---~~-~~~L~~~~~v~li~pl~~~~f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE-- 314 (383)
T COG0381 246 PR--PRVRE---LV-LKRLKNVERVKLIDPLGYLDFHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPE-- 314 (383)
T ss_pred CC--hhhhH---HH-HHHhCCCCcEEEeCCcchHHHHHHHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCcc--
Confidence 31 11221 11 1111123456654 56788899999988 9998773 45699999999999999999995
Q ss_pred HHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccC
Q 011339 393 KLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEG 439 (488)
Q Consensus 393 ~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~ 439 (488)
..-+|...-.. .+.+.|.+++.++++++
T Consensus 315 -----~v~agt~~lvg--------------~~~~~i~~~~~~ll~~~ 342 (383)
T COG0381 315 -----GVEAGTNILVG--------------TDEENILDAATELLEDE 342 (383)
T ss_pred -----ceecCceEEeC--------------ccHHHHHHHHHHHhhCh
Confidence 33344444433 67899999999999987
No 115
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.72 E-value=0.00056 Score=69.13 Aligned_cols=152 Identities=18% Similarity=0.250 Sum_probs=86.6
Q ss_pred CCCeEEEEeeCCccCCChHHHHHHHHHHhcCCCCeEEEEeCCCCCchhhhhhhhhHHHHH-HhcCCCeEEecccchhh--
Q 011339 274 PPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEE-RVKGRGILILGWAPQVL-- 350 (488)
Q Consensus 274 ~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~nv~~~~~~pq~~-- 350 (488)
++..++|.||......+++.+..-.+.+++.+...+|...... ... .. +-..+.. -..+..+++.++.|+.+
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~-~~~--~~--l~~~~~~~Gv~~~Ri~f~~~~~~~ehl 356 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPA-SGE--AR--LRRRFAAHGVDPDRIIFSPVAPREEHL 356 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETST-THH--HH--HHHHHHHTTS-GGGEEEEE---HHHHH
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCH-HHH--HH--HHHHHHHcCCChhhEEEcCCCCHHHHH
Confidence 4556999999999999999999889999999998999887654 110 11 1111111 11245777777777544
Q ss_pred -hhccCCccccc---ccCCchhHHHHhhcCCCEeecCccc-ccchhHHHHHHHhcceEEecccCCCCCCcccccccccCH
Q 011339 351 -ILSHPSIGGFL---THCSWNSSLEGISAGVPLITWPLYG-DQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKK 425 (488)
Q Consensus 351 -ll~~~~~~~~I---thgG~gs~~eal~~GvP~v~~P~~~-DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~ 425 (488)
.+..+|+ ++ ..+|..|++|||+.|||+|.+|--. =....+..+ ..+|+...+ . .+.
T Consensus 357 ~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL-~~lGl~ElI--A--------------~s~ 417 (468)
T PF13844_consen 357 RRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASIL-RALGLPELI--A--------------DSE 417 (468)
T ss_dssp HHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHH-HHHT-GGGB-----------------SSH
T ss_pred HHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHH-HHcCCchhc--C--------------CCH
Confidence 3344555 54 4678899999999999999999432 334455667 588887654 2 567
Q ss_pred HHHHHHHHHHHccCcchHHHHHHH
Q 011339 426 EDVVKAINILMDEGGETDDRRKRA 449 (488)
Q Consensus 426 ~~l~~ai~~~l~~~~~~~~~~~~a 449 (488)
++-.+...++-+|+++.+.+|++.
T Consensus 418 ~eYv~~Av~La~D~~~l~~lR~~L 441 (468)
T PF13844_consen 418 EEYVEIAVRLATDPERLRALRAKL 441 (468)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 777766667888874433444433
No 116
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.70 E-value=0.00041 Score=61.14 Aligned_cols=93 Identities=25% Similarity=0.294 Sum_probs=68.1
Q ss_pred CCCeEEecccch---hhhhccCCccccccc----CCchhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccC
Q 011339 337 GRGILILGWAPQ---VLILSHPSIGGFLTH----CSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEV 409 (488)
Q Consensus 337 ~~nv~~~~~~pq---~~ll~~~~~~~~Ith----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~ 409 (488)
..++.+..+.++ ..++..+++ +|+. |...++.||+++|+|+|+.. ...+...+ ...+.|..++.
T Consensus 72 ~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~-~~~~~g~~~~~-- 142 (172)
T PF00534_consen 72 KENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEII-NDGVNGFLFDP-- 142 (172)
T ss_dssp GTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHS-GTTTSEEEEST--
T ss_pred ccccccccccccccccccccccee--ccccccccccccccccccccccceeecc----ccCCceee-ccccceEEeCC--
Confidence 468888888872 457888888 7765 55579999999999999754 45566666 46667888865
Q ss_pred CCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHH
Q 011339 410 PLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRARE 451 (488)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~ 451 (488)
.+.+++.++|.++++|++..+.+.+++++
T Consensus 143 -------------~~~~~l~~~i~~~l~~~~~~~~l~~~~~~ 171 (172)
T PF00534_consen 143 -------------NDIEELADAIEKLLNDPELRQKLGKNARE 171 (172)
T ss_dssp -------------TSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CCHHHHHHHHHHHHCCHHHHHHHHHHhcC
Confidence 49999999999999987555555555554
No 117
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.52 E-value=0.0046 Score=62.23 Aligned_cols=114 Identities=13% Similarity=0.155 Sum_probs=74.9
Q ss_pred CCCeEEecccchhh---hhccCCccccccc----CCc-hhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEeccc
Q 011339 337 GRGILILGWAPQVL---ILSHPSIGGFLTH----CSW-NSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVE 408 (488)
Q Consensus 337 ~~nv~~~~~~pq~~---ll~~~~~~~~Ith----gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~ 408 (488)
..++++.+++|+.+ +++.+++ +|.- .|. .++.||+++|+|+|+.... .+...+ +.-..|..+...
T Consensus 256 ~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv-~~~~~G~~l~~~ 328 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFV-LEGITGYHLAEP 328 (380)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhc-ccCCceEEEeCC
Confidence 45788889988644 5888888 6642 343 5778999999999997763 344455 355567655332
Q ss_pred CCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHc
Q 011339 409 VPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETRSSSLMIKLLIQDIMQ 479 (488)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~ 479 (488)
.+++++.++|.++++|+ ..+ ++++..++...+.-+-...++++.+.+.+
T Consensus 329 --------------~d~~~la~~I~~ll~d~----~~~----~~~~~ar~~~~~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 329 --------------MTSDSIISDINRTLADP----ELT----QIAEQAKDFVFSKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred --------------CCHHHHHHHHHHHHcCH----HHH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 58999999999999987 322 33444443333445555666666665543
No 118
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.47 E-value=0.076 Score=55.09 Aligned_cols=116 Identities=17% Similarity=0.161 Sum_probs=75.4
Q ss_pred CCCeEEecccch-hhhhccCCcccccc---cCCc-hhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCCC
Q 011339 337 GRGILILGWAPQ-VLILSHPSIGGFLT---HCSW-NSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPL 411 (488)
Q Consensus 337 ~~nv~~~~~~pq-~~ll~~~~~~~~It---hgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~ 411 (488)
.++|++.+|..+ ..+|..+++ ||. +-|. +++.||+++|+|+|+... ..+...+ +.-..|..++..
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV-~dG~nG~LVp~~--- 523 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECF-IEGVSGFILDDA--- 523 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHc-ccCCcEEEECCC---
Confidence 467888888654 457888888 775 3454 699999999999998765 3455666 365667777653
Q ss_pred CCCcccccccccCHHHHHHHH---HHHHccCcchHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCC
Q 011339 412 DFGEEEEIGVLVKKEDVVKAI---NILMDEGGETDDRRKRAREFQIMAKRATEETRSSSLMIKLLIQDIMQQP 481 (488)
Q Consensus 412 ~~~~~~~~~~~~~~~~l~~ai---~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~~~ 481 (488)
+.+.+.+++ .+++.+. ++...+++..++.+++--|....+++..+-+..++
T Consensus 524 ------------D~~aLa~ai~lA~aL~~ll-------~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~~~ 577 (578)
T PRK15490 524 ------------QTVNLDQACRYAEKLVNLW-------RSRTGICQQTQSFLQERFTVEHMVGTFVKTIASQP 577 (578)
T ss_pred ------------ChhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcC
Confidence 444555544 2233221 12233455555555667787888888888777664
No 119
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.42 E-value=0.092 Score=53.25 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=30.0
Q ss_pred CEEEEEc--CCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 10 PHFVLFP--FLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 10 ~kvl~~~--~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
|||+.+. .+..|-=.-++.|++.|.++||+|.++...
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~ 39 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGY 39 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhcCCeEEEEEec
Confidence 6787665 346666677899999999999999998775
No 120
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.40 E-value=0.015 Score=52.92 Aligned_cols=49 Identities=22% Similarity=0.344 Sum_probs=35.3
Q ss_pred CCCeEEecccch----hhhhccCCcccccccCC----chhHHHHhhcCCCEeecCcccc
Q 011339 337 GRGILILGWAPQ----VLILSHPSIGGFLTHCS----WNSSLEGISAGVPLITWPLYGD 387 (488)
Q Consensus 337 ~~nv~~~~~~pq----~~ll~~~~~~~~IthgG----~gs~~eal~~GvP~v~~P~~~D 387 (488)
..|+.+.++++. ..++..+++ +|+-.. .+++.||+++|+|+|+.+..+.
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 457888887632 223444776 777665 6899999999999999887543
No 121
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.00048 Score=56.11 Aligned_cols=108 Identities=18% Similarity=0.176 Sum_probs=72.2
Q ss_pred EEEeeCCccCCChHHHHH--HHHHHhcCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEEecc--cc-hhhhhc
Q 011339 279 VYVCLGSICNLTSSQMIE--LGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGW--AP-QVLILS 353 (488)
Q Consensus 279 V~vs~Gs~~~~~~~~~~~--~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~--~p-q~~ll~ 353 (488)
+|||-||....-.+.... +.+-.+....++|..++.+. . .|- +...+.+| .+ -+.+..
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d--~-------kpv--------agl~v~~F~~~~kiQsli~ 64 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGD--I-------KPV--------AGLRVYGFDKEEKIQSLIH 64 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCC--c-------ccc--------cccEEEeechHHHHHHHhh
Confidence 789999995422222222 33333344558899998875 1 220 22344444 34 355676
Q ss_pred cCCcccccccCCchhHHHHhhcCCCEeecCccc--------ccchhHHHHHHHhcceEEec
Q 011339 354 HPSIGGFLTHCSWNSSLEGISAGVPLITWPLYG--------DQFWNEKLIVQVLNIGVRIG 406 (488)
Q Consensus 354 ~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~--------DQ~~na~rv~e~~G~G~~l~ 406 (488)
.+++ +|+|+|.||++.++..++|.|++|-.. .|-.-|..++ +.+.=+...
T Consensus 65 darI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~kla-e~~~vv~~s 122 (161)
T COG5017 65 DARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLA-EINYVVACS 122 (161)
T ss_pred cceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHH-hcCceEEEc
Confidence 7776 999999999999999999999999643 3777788886 777665554
No 122
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.36 E-value=0.26 Score=52.36 Aligned_cols=76 Identities=12% Similarity=0.100 Sum_probs=52.4
Q ss_pred CeEEecccchh-hhhccCCccccccc---CCc-hhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCCCCC
Q 011339 339 GILILGWAPQV-LILSHPSIGGFLTH---CSW-NSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPLDF 413 (488)
Q Consensus 339 nv~~~~~~pq~-~ll~~~~~~~~Ith---gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~ 413 (488)
++.+.++.++. ++++.+++ ||.- =|. .++.||+++|+|+|+....+... + ..-+-| .+ .
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V-~~g~nG-ll--~----- 665 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----F-RSFPNC-LT--Y----- 665 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----E-eecCCe-Ee--c-----
Confidence 35566666654 48888888 7752 333 68899999999999988765321 3 122222 22 1
Q ss_pred CcccccccccCHHHHHHHHHHHHccC
Q 011339 414 GEEEEIGVLVKKEDVVKAINILMDEG 439 (488)
Q Consensus 414 ~~~~~~~~~~~~~~l~~ai~~~l~~~ 439 (488)
-+.+++.++|.++|+|+
T Consensus 666 ---------~D~EafAeAI~~LLsd~ 682 (794)
T PLN02501 666 ---------KTSEDFVAKVKEALANE 682 (794)
T ss_pred ---------CCHHHHHHHHHHHHhCc
Confidence 36899999999999987
No 123
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.19 E-value=0.13 Score=48.55 Aligned_cols=106 Identities=17% Similarity=0.140 Sum_probs=71.2
Q ss_pred CCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCccccCCCchhhHH
Q 011339 18 LAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFDMLHSTDLVS 97 (488)
Q Consensus 18 ~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~ 97 (488)
.-.-|+.-+-.|.++|.++||+|.+.|-... .+.+.+..+ ||.+..+.. .+.. .+..
T Consensus 8 ~n~~hvhfFk~lI~elekkG~ev~iT~rd~~--~v~~LLd~y-----gf~~~~Igk--------~g~~--------tl~~ 64 (346)
T COG1817 8 GNPPHVHFFKNLIWELEKKGHEVLITCRDFG--VVTELLDLY-----GFPYKSIGK--------HGGV--------TLKE 64 (346)
T ss_pred CCcchhhHHHHHHHHHHhCCeEEEEEEeecC--cHHHHHHHh-----CCCeEeecc--------cCCc--------cHHH
Confidence 3556888899999999999999988776522 233444433 777777641 1110 1111
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEEecc
Q 011339 98 NFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISFHGF 150 (488)
Q Consensus 98 ~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~ 150 (488)
.+... ......|.+++.+ .+||+.+. -..+.+..+|..+|+|.+.+.-.
T Consensus 65 Kl~~~-~eR~~~L~ki~~~--~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ 113 (346)
T COG1817 65 KLLES-AERVYKLSKIIAE--FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDN 113 (346)
T ss_pred HHHHH-HHHHHHHHHHHhh--cCCceEee-cCCcchhhHHhhcCCceEEecCC
Confidence 22222 2234567788888 89999999 56778999999999999997433
No 124
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.16 E-value=0.0012 Score=55.54 Aligned_cols=127 Identities=22% Similarity=0.312 Sum_probs=68.5
Q ss_pred EEEEeeCCccC-CChHHHHH-HHHHHhcCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEEecccch-hhhhcc
Q 011339 278 VVYVCLGSICN-LTSSQMIE-LGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQ-VLILSH 354 (488)
Q Consensus 278 vV~vs~Gs~~~-~~~~~~~~-~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq-~~ll~~ 354 (488)
+.++++|+... ...+.+.. +++.+++...++-+.+-+.. .. .+.+ + ...|+.+.+|++. .++++.
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~-~~-~l~~--~--------~~~~v~~~g~~~e~~~~l~~ 70 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNG-PD-ELKR--L--------RRPNVRFHGFVEELPEILAA 70 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECES-S--HHCC--H--------HHCTEEEE-S-HHHHHHHHC
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCC-HH-HHHH--h--------cCCCEEEcCCHHHHHHHHHh
Confidence 34455665553 23333333 55555543344555544433 11 2222 1 2359999999865 458889
Q ss_pred CCccccccc--CCc-hhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHH
Q 011339 355 PSIGGFLTH--CSW-NSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKA 431 (488)
Q Consensus 355 ~~~~~~Ith--gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~a 431 (488)
+++.+..+. .|. +++.|++++|+|+|+.+. ...... +..+.|..+ . -+++++.++
T Consensus 71 ~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~-~~~~~~~~~--~--------------~~~~~l~~~ 128 (135)
T PF13692_consen 71 ADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIV-EEDGCGVLV--A--------------NDPEELAEA 128 (135)
T ss_dssp -SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE---T--------------T-HHHHHHH
T ss_pred CCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhhe-eecCCeEEE--C--------------CCHHHHHHH
Confidence 998665442 233 899999999999999776 123344 356777766 3 489999999
Q ss_pred HHHHHcc
Q 011339 432 INILMDE 438 (488)
Q Consensus 432 i~~~l~~ 438 (488)
|.++++|
T Consensus 129 i~~l~~d 135 (135)
T PF13692_consen 129 IERLLND 135 (135)
T ss_dssp HHHHHH-
T ss_pred HHHHhcC
Confidence 9999875
No 125
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.91 E-value=0.063 Score=52.51 Aligned_cols=43 Identities=12% Similarity=0.136 Sum_probs=38.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeCCcchhhhH
Q 011339 11 HFVLFPFLAQGHMIPMIDTARLLAQH--GAAITIVTTPANAARFK 53 (488)
Q Consensus 11 kvl~~~~~~~GHv~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~ 53 (488)
||+++-....|++.-+.++.++|+++ +.+|+|++.+.+.+.++
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~ 45 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVR 45 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhh
Confidence 58999999999999999999999998 99999999986665554
No 126
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.65 E-value=0.019 Score=48.44 Aligned_cols=101 Identities=16% Similarity=0.243 Sum_probs=65.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCccccCC
Q 011339 11 HFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFDML 90 (488)
Q Consensus 11 kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~ 90 (488)
||++++.....| ...+++.|.++||+|++++.....+.... ..+++++.++.+ . .
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~--------~~~i~~~~~~~~-------~----k--- 55 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI--------IEGIKVIRLPSP-------R----K--- 55 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH--------hCCeEEEEecCC-------C----C---
Confidence 688888776666 45779999999999999999644322211 136777776411 0 0
Q ss_pred CchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCc---chHHHHHhcC-CCcEEE
Q 011339 91 HSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYP---WTVDTAARFN-IPRISF 147 (488)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~---~~~~~a~~lg-iP~v~~ 147 (488)
.... .+ . .. .+..+++. .+||+|.+-.... .+..++...+ +|++..
T Consensus 56 ~~~~---~~----~-~~-~l~k~ik~--~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~ 105 (139)
T PF13477_consen 56 SPLN---YI----K-YF-RLRKIIKK--EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYT 105 (139)
T ss_pred ccHH---HH----H-HH-HHHHHhcc--CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEE
Confidence 0111 11 1 13 67888888 8999997766543 3445667888 888764
No 127
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.36 E-value=0.14 Score=52.65 Aligned_cols=127 Identities=17% Similarity=0.273 Sum_probs=81.0
Q ss_pred CCCeEEEEeeCCccCCChHHHHHHHHHHhcCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEEecccc-----h
Q 011339 274 PPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAP-----Q 348 (488)
Q Consensus 274 ~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~p-----q 348 (488)
++..+||++|--....+|+.++.-++.++..+..++|...........+..+ -+.+ -..++.+++.+-++ +
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty--~~~~--Gl~p~riifs~va~k~eHvr 831 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTY--AEQL--GLEPDRIIFSPVAAKEEHVR 831 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccchHHHHHH--HHHh--CCCccceeeccccchHHHHH
Confidence 4566999999888889999999999999999999999987765111111110 0000 01244555433332 2
Q ss_pred hhhhccCCcccccccCCchhHHHHhhcCCCEeecCcccccc-hhHHHHHHHhcceEEec
Q 011339 349 VLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQF-WNEKLIVQVLNIGVRIG 406 (488)
Q Consensus 349 ~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~DQ~-~na~rv~e~~G~G~~l~ 406 (488)
.-.|+...++-+.+. |..|.++.|+.|||||.+|.-.--. .-+-.+. .+|+|..+-
T Consensus 832 r~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~-~~Gl~hlia 888 (966)
T KOG4626|consen 832 RGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLT-ALGLGHLIA 888 (966)
T ss_pred hhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHH-HcccHHHHh
Confidence 223444444445555 6789999999999999999754322 2334453 788887553
No 128
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.35 E-value=0.26 Score=49.01 Aligned_cols=107 Identities=13% Similarity=0.046 Sum_probs=68.9
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeCCcchhhhHHHHHhhhcCCCCeE-EEEeeCCccccCCCCCC
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQH--GAAITIVTTPANAARFKTVVARAMQSGLPLQ-LIEIQFPYQEAGVPEGC 84 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~l~~~~ 84 (488)
.++||+++-....|++.-+.++.+.|+++ +.+|++++.+.+.+.++.. +.++ ++.++. ...
T Consensus 4 ~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~id~vi~~~~-------~~~- 67 (352)
T PRK10422 4 PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSEN--------PEINALYGIKN-------KKA- 67 (352)
T ss_pred CCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccC--------CCceEEEEecc-------ccc-
Confidence 46889999999999999999999999998 8999999998766655422 2343 222220 000
Q ss_pred ccccCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEE
Q 011339 85 ENFDMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRIS 146 (488)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~ 146 (488)
.....+. ..-.+...++. .++|++|.-........++...|.+..+
T Consensus 68 ---------~~~~~~~-----~~~~l~~~lr~--~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 68 ---------GASEKIK-----NFFSLIKVLRA--NKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred ---------cHHHHHH-----HHHHHHHHHhh--CCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 0000110 11123344555 6999999665444456677777877655
No 129
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.33 E-value=0.02 Score=56.53 Aligned_cols=110 Identities=15% Similarity=0.226 Sum_probs=76.1
Q ss_pred CCCeEEecccchhhhh---ccCCccccccc-------CCc------hhHHHHhhcCCCEeecCcccccchhHHHHHHHhc
Q 011339 337 GRGILILGWAPQVLIL---SHPSIGGFLTH-------CSW------NSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLN 400 (488)
Q Consensus 337 ~~nv~~~~~~pq~~ll---~~~~~~~~Ith-------gG~------gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G 400 (488)
..|+...+|+|+.++. .. +..++... +.+ +-+.++|++|+|+|+. ++...+..+ ++.+
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V-~~~~ 279 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFI-VENG 279 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHH-HhCC
Confidence 4689999999987754 33 33222221 111 2367889999999985 446778888 6999
Q ss_pred ceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 011339 401 IGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETRSSSLMIKLLIQ 475 (488)
Q Consensus 401 ~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~ 475 (488)
+|..++ +.+++.+++.++.. ++.+.|++|++++++.+++ |.-...++++++.
T Consensus 280 ~G~~v~-----------------~~~el~~~l~~~~~--~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~ 331 (333)
T PRK09814 280 LGFVVD-----------------SLEELPEIIDNITE--EEYQEMVENVKKISKLLRN----GYFTKKALVDAIK 331 (333)
T ss_pred ceEEeC-----------------CHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHh
Confidence 999985 34578888887542 4456899999999999663 6665666666554
No 130
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.26 E-value=0.0044 Score=48.68 Aligned_cols=66 Identities=18% Similarity=0.209 Sum_probs=50.9
Q ss_pred cccchhhhcccCCCCCCeEEEEeeCCccCC---C--hHHHHHHHHHHhcCCCCeEEEEeCCCCCchhhhhhhhhH
Q 011339 260 AVDISECLNWLDSWPPNSVVYVCLGSICNL---T--SSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEE 329 (488)
Q Consensus 260 ~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~---~--~~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~p~ 329 (488)
+..+..+..|+...+.+|.|+||+||.... . ...+..++++++..+..+|..+.... ...+.+ +|+
T Consensus 24 yNG~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~--~~~lg~--lP~ 94 (97)
T PF06722_consen 24 YNGPAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQ--RAELGE--LPD 94 (97)
T ss_dssp --SSEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCC--CGGCCS---TT
T ss_pred CCCCCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHH--HHhhCC--CCC
Confidence 335677889999999999999999999984 2 24788999999999999999988764 444455 553
No 131
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.04 E-value=0.37 Score=47.68 Aligned_cols=105 Identities=11% Similarity=0.046 Sum_probs=68.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeCCcchhhhHHHHHhhhcCCCCeE-EEEeeCCccccCCCCCCccc
Q 011339 11 HFVLFPFLAQGHMIPMIDTARLLAQH--GAAITIVTTPANAARFKTVVARAMQSGLPLQ-LIEIQFPYQEAGVPEGCENF 87 (488)
Q Consensus 11 kvl~~~~~~~GHv~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~l~~~~~~~ 87 (488)
||+++-..+.|++.-+.++.++|+++ +.+|++++.+.+.+.++.. +.+. ++.++ ....
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~vd~vi~~~---------~~~~-- 61 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN--------PDINALYGLD---------RKKA-- 61 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC--------CCccEEEEeC---------hhhh--
Confidence 58999999999999999999999997 8999999998766655432 2343 23322 0000
Q ss_pred cCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEE
Q 011339 88 DMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRIS 146 (488)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~ 146 (488)
. .....+. .. -.+...++. .++|++|.-...+....++...|.|.-+
T Consensus 62 ---~--~~~~~~~----~~-~~l~~~lr~--~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 62 ---K--AGERKLA----NQ-FHLIKVLRA--NRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred ---c--chHHHHH----HH-HHHHHHHHh--CCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 0 0000111 11 123344555 6999999665555677788888988655
No 132
>PRK14099 glycogen synthase; Provisional
Probab=95.95 E-value=2.5 Score=43.96 Aligned_cols=39 Identities=10% Similarity=0.012 Sum_probs=29.8
Q ss_pred CCCEEEEEcCC------CccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 8 QQPHFVLFPFL------AQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 8 ~~~kvl~~~~~------~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
+.|||+|++.- +.|=-.-.-+|.++|+++||+|.++.+.
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~ 46 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPG 46 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 67999999842 2333344667889999999999999884
No 133
>PRK14098 glycogen synthase; Provisional
Probab=94.87 E-value=0.72 Score=48.03 Aligned_cols=111 Identities=12% Similarity=0.047 Sum_probs=66.1
Q ss_pred CCCeEEecccchh---hhhccCCcccccccC---Cc-hhHHHHhhcCCCEeecCccc--ccchhHHHHHHHhcceEEecc
Q 011339 337 GRGILILGWAPQV---LILSHPSIGGFLTHC---SW-NSSLEGISAGVPLITWPLYG--DQFWNEKLIVQVLNIGVRIGV 407 (488)
Q Consensus 337 ~~nv~~~~~~pq~---~ll~~~~~~~~Ithg---G~-gs~~eal~~GvP~v~~P~~~--DQ~~na~rv~e~~G~G~~l~~ 407 (488)
+.++.+..+++.. .+++.+++ ||.-. |. .+.+||+++|+|.|+....+ |...+ .. +.-+-|...+.
T Consensus 361 ~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~-~~~~~G~l~~~ 435 (489)
T PRK14098 361 PEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VS-EDKGSGFIFHD 435 (489)
T ss_pred CCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CC-CCCCceeEeCC
Confidence 4678887777764 57788888 66432 33 37789999999988876533 21111 11 12345666654
Q ss_pred cCCCCCCcccccccccCHHHHHHHHHHHHc---cCcchHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 011339 408 EVPLDFGEEEEIGVLVKKEDVVKAINILMD---EGGETDDRRKRAREFQIMAKRATEETRSSSLMIKLLIQDI 477 (488)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~---~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~ 477 (488)
.+++++.++|.++++ |+ . .+++..++++++.-|-...++++++..
T Consensus 436 ---------------~d~~~la~ai~~~l~~~~~~----~------~~~~~~~~~~~~~fsw~~~a~~y~~lY 483 (489)
T PRK14098 436 ---------------YTPEALVAKLGEALALYHDE----E------RWEELVLEAMERDFSWKNSAEEYAQLY 483 (489)
T ss_pred ---------------CCHHHHHHHHHHHHHHHcCH----H------HHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 588999999998763 33 1 122222233444555555656655443
No 134
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=94.71 E-value=0.039 Score=47.20 Aligned_cols=94 Identities=18% Similarity=0.230 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCccccCCCchhhHHHHHHHHH
Q 011339 25 PMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFDMLHSTDLVSNFFKSLR 104 (488)
Q Consensus 25 p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 104 (488)
-+..|+++|.++||+|++++......... ....++.+..++.+... .... ....
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-------~~~~---~~~~--------- 59 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDE-------EEEDGVRVHRLPLPRRP-------WPLR---LLRF--------- 59 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-S-------EEETTEEEEEE--S-SS-------SGGG---HCCH---------
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccc-------cccCCceEEeccCCccc-------hhhh---hHHH---------
Confidence 46789999999999999998754433211 01126777776533111 0000 0011
Q ss_pred HhhHHHHHHH--HhcCCCCeEEEEcCCCc-chHHHHH-hcCCCcEEEe
Q 011339 105 LLQLPLENLL--KELTPKPSCIVSDTCYP-WTVDTAA-RFNIPRISFH 148 (488)
Q Consensus 105 ~~~~~l~~~l--~~~~~~pD~vv~D~~~~-~~~~~a~-~lgiP~v~~~ 148 (488)
...+..++ +. .+||+|.+..... ....+++ ..++|++...
T Consensus 60 --~~~~~~~l~~~~--~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 60 --LRRLRRLLAARR--ERPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp --HHHHHHHCHHCT-----SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred --HHHHHHHHhhhc--cCCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 12333344 44 7999999776432 3334444 7899998753
No 135
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=94.68 E-value=1.6 Score=44.49 Aligned_cols=163 Identities=12% Similarity=0.079 Sum_probs=90.6
Q ss_pred cccCCCCCCeEEEEeeCCccCC------C----hHHHHHHHHHHhcCCCCeEEEEeCCCCC---chhhhhhhhhHHHHHH
Q 011339 268 NWLDSWPPNSVVYVCLGSICNL------T----SSQMIELGLGLEASKKPFIWVIRGGNNT---SKEIQEWLLEEKFEER 334 (488)
Q Consensus 268 ~~l~~~~~~~vV~vs~Gs~~~~------~----~~~~~~~~~a~~~~~~~~v~~~~~~~~~---~~~~~~~~~p~~~~~~ 334 (488)
.|+....++++|.||.-..... . .+.+..+++.+...++++++.......+ ..+.. .-..+.+.
T Consensus 226 ~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~---~~~~l~~~ 302 (426)
T PRK10017 226 HWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRM---VALNLRQH 302 (426)
T ss_pred hhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHH---HHHHHHHh
Confidence 4544333456888886544311 1 1223344555555588877664321100 00100 11222222
Q ss_pred hc-CCCeEE--ecccch--hhhhccCCcccccccCCchhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEE-eccc
Q 011339 335 VK-GRGILI--LGWAPQ--VLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVR-IGVE 408 (488)
Q Consensus 335 ~~-~~nv~~--~~~~pq--~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~-l~~~ 408 (488)
.. +.++++ ..+-|. ..+++++++ +|..==+ ++.-|+..|||.+.++. | +-....+ +.+|.... .+.+
T Consensus 303 ~~~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~RlH-a~I~a~~~gvP~i~i~Y--~-~K~~~~~-~~lg~~~~~~~~~ 375 (426)
T PRK10017 303 VSDPARYHVVMDELNDLEMGKILGACEL--TVGTRLH-SAIISMNFGTPAIAINY--E-HKSAGIM-QQLGLPEMAIDIR 375 (426)
T ss_pred cccccceeEecCCCChHHHHHHHhhCCE--EEEecch-HHHHHHHcCCCEEEeee--h-HHHHHHH-HHcCCccEEechh
Confidence 22 223332 233343 368888887 8864333 45567889999999998 3 3345555 58888866 5555
Q ss_pred CCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHH
Q 011339 409 VPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMA 456 (488)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~ 456 (488)
.++.++|.+.+.++++|.+ .+++..++--+.+
T Consensus 376 -------------~l~~~~Li~~v~~~~~~r~---~~~~~l~~~v~~~ 407 (426)
T PRK10017 376 -------------HLLDGSLQAMVADTLGQLP---ALNARLAEAVSRE 407 (426)
T ss_pred -------------hCCHHHHHHHHHHHHhCHH---HHHHHHHHHHHHH
Confidence 5899999999999998753 4554444433333
No 136
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=94.48 E-value=3.1 Score=40.98 Aligned_cols=105 Identities=13% Similarity=0.061 Sum_probs=70.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCcc
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQH--GAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCEN 86 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~ 86 (488)
||||+++-....|++.=.+++-+.|+++ +.+++|++.+...+.++.. +.+.-+.+- ...+.
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~--------p~I~~vi~~-------~~~~~-- 63 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN--------PEIDKVIII-------DKKKK-- 63 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC--------hHhhhhccc-------ccccc--
Confidence 6899999999999999999999999998 5999999998665554322 122221110 00000
Q ss_pred ccCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEE
Q 011339 87 FDMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRIS 146 (488)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~ 146 (488)
. ........+...++. .++|+||.=.-.+-...++...++|.-.
T Consensus 64 -------~-------~~~~~~~~l~~~lr~--~~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 64 -------G-------LGLKERLALLRTLRK--ERYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred -------c-------cchHHHHHHHHHhhc--cCCCEEEECcccHHHHHHHHHhCCCccc
Confidence 0 001124455666666 6899999777666666777778887655
No 137
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=0.29 Score=50.15 Aligned_cols=121 Identities=20% Similarity=0.316 Sum_probs=84.4
Q ss_pred CCCeEEEEeeCCccCCChHHHHHHHHHHhcCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHh-----cCCCeEEecccch
Q 011339 274 PPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERV-----KGRGILILGWAPQ 348 (488)
Q Consensus 274 ~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~-----~~~nv~~~~~~pq 348 (488)
|++-+||+|++......++.+..-++.++..+..++|..+++. +. + +...++... ...++++.+-.|.
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~-~~-~-----~~~~l~~la~~~Gv~~eRL~f~p~~~~ 499 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGD-DA-E-----INARLRDLAEREGVDSERLRFLPPAPN 499 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCC-cH-H-----HHHHHHHHHHHcCCChhheeecCCCCC
Confidence 4667999999999999999998888899999999999998854 22 1 222222222 3456666666553
Q ss_pred ---hhhhccCCccccc---ccCCchhHHHHhhcCCCEeecCcccccch--hHHHHHHHhcceEEe
Q 011339 349 ---VLILSHPSIGGFL---THCSWNSSLEGISAGVPLITWPLYGDQFW--NEKLIVQVLNIGVRI 405 (488)
Q Consensus 349 ---~~ll~~~~~~~~I---thgG~gs~~eal~~GvP~v~~P~~~DQ~~--na~rv~e~~G~G~~l 405 (488)
.+=+..+++ |+ .-||..|+.|+|..|||+|..+ ++|+- |+.-++..+|+-..+
T Consensus 500 ~~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~v 560 (620)
T COG3914 500 EDHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELV 560 (620)
T ss_pred HHHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhh
Confidence 444556666 66 4799999999999999999876 55553 333333466665555
No 138
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=94.18 E-value=4.4 Score=39.57 Aligned_cols=43 Identities=12% Similarity=0.054 Sum_probs=38.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeCCcchhhh
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQH--GAAITIVTTPANAARF 52 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~ 52 (488)
|||+++-....|++.-+.++.+.|+++ +.+|+|++.+.+.+.+
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~ 45 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIP 45 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHH
Confidence 689999999999999999999999997 9999999998554443
No 139
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=94.10 E-value=0.53 Score=41.19 Aligned_cols=94 Identities=14% Similarity=0.175 Sum_probs=52.4
Q ss_pred HCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCccccCCCchhhHHHHHHHHHHhhHHHHHHH
Q 011339 35 QHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFDMLHSTDLVSNFFKSLRLLQLPLENLL 114 (488)
Q Consensus 35 ~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 114 (488)
++||+|+|+|........ .|++.+.+..+... ..+.. ....++...+. ........+.++.
T Consensus 1 q~gh~v~fl~~~~~~~~~-----------~GV~~~~y~~~~~~---~~~~~----~~~~~~e~~~~-rg~av~~a~~~L~ 61 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP-----------PGVRVVRYRPPRGP---TPGTH----PYVRDFEAAVL-RGQAVARAARQLR 61 (171)
T ss_pred CCCCEEEEEecCCCCCCC-----------CCcEEEEeCCCCCC---CCCCC----cccccHHHHHH-HHHHHHHHHHHHH
Confidence 479999999965332211 27777777532111 11100 00111112222 2233445555555
Q ss_pred HhcCCCCeEEEEcCCCcchHHHHHhc-CCCcEEEe
Q 011339 115 KELTPKPSCIVSDTCYPWTVDTAARF-NIPRISFH 148 (488)
Q Consensus 115 ~~~~~~pD~vv~D~~~~~~~~~a~~l-giP~v~~~ 148 (488)
++ +..||+|++-.---.+..+-..+ +.|.+.+.
T Consensus 62 ~~-Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 62 AQ-GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred Hc-CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 44 68999999886544666778888 78888873
No 140
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=93.89 E-value=6.1 Score=37.61 Aligned_cols=43 Identities=19% Similarity=0.208 Sum_probs=37.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCC--CeEEEEeCCcchhhhH
Q 011339 11 HFVLFPFLAQGHMIPMIDTARLLAQHG--AAITIVTTPANAARFK 53 (488)
Q Consensus 11 kvl~~~~~~~GHv~p~l~LA~~L~~rG--H~Vt~~~~~~~~~~~~ 53 (488)
||+++-..+.|++.-+.++.++|+++. -+|++++.+.+.+.++
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~ 45 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLE 45 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHh
Confidence 689999999999999999999999984 8999999996666554
No 141
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=93.46 E-value=0.87 Score=39.94 Aligned_cols=114 Identities=21% Similarity=0.232 Sum_probs=63.5
Q ss_pred EcCCCccCHHHHHHHHHHH-HHC-CCeEEEEeCCcchhhhH-HHHHhhhcCCCCeEEEEeeCCccccCCCCCCccccCCC
Q 011339 15 FPFLAQGHMIPMIDTARLL-AQH-GAAITIVTTPANAARFK-TVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFDMLH 91 (488)
Q Consensus 15 ~~~~~~GHv~p~l~LA~~L-~~r-GH~Vt~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~ 91 (488)
+..++.||..-|+.|.+.+ .++ .++..+++..+..+.-+ ..+++. .....++..++ ....- .
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~--~~~~~~~~~~~---------r~r~v----~ 67 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKS--SSKRHKILEIP---------RAREV----G 67 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHh--ccccceeeccc---------eEEEe----c
Confidence 4456899999999999999 334 56655665554333211 111111 00011233322 11100 0
Q ss_pred chhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCC--cchHHHHHhc------CCCcEEE
Q 011339 92 STDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCY--PWTVDTAARF------NIPRISF 147 (488)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~--~~~~~~a~~l------giP~v~~ 147 (488)
.......+.........+.-+.+. +||+||+..-. ...+.+|..+ |.+.|.+
T Consensus 68 -q~~~~~~~~~l~~~~~~~~il~r~---rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyI 127 (170)
T PF08660_consen 68 -QSYLTSIFTTLRAFLQSLRILRRE---RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYI 127 (170)
T ss_pred -hhhHhhHHHHHHHHHHHHHHHHHh---CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEE
Confidence 122233444444455566666666 89999999854 4677788888 8888775
No 142
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=93.32 E-value=0.59 Score=36.12 Aligned_cols=83 Identities=17% Similarity=0.163 Sum_probs=49.4
Q ss_pred cCCchhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcch
Q 011339 363 HCSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGET 442 (488)
Q Consensus 363 hgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~ 442 (488)
+|-..-+.|++++|+|+|.-.. ..... -..=|...-.. -+.+++.++|..+++|++..
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~----~~~~~~~~~~~--------------~~~~el~~~i~~ll~~~~~~ 66 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLRE----IFEDGEHIITY--------------NDPEELAEKIEYLLENPEER 66 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHH----HcCCCCeEEEE--------------CCHHHHHHHHHHHHCCHHHH
Confidence 4445689999999999998765 22222 22223222222 28999999999999998433
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Q 011339 443 DDRRKRAREFQIMAKRATEETRSSSLMIKLLI 474 (488)
Q Consensus 443 ~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i 474 (488)
+.+.+++++ .+.+.-+....++.++
T Consensus 67 ~~ia~~a~~-------~v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 67 RRIAKNARE-------RVLKRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHHHHH-------HHHHhCCHHHHHHHHH
Confidence 333333332 2333555555555544
No 143
>PHA01633 putative glycosyl transferase group 1
Probab=93.27 E-value=2.5 Score=41.54 Aligned_cols=85 Identities=14% Similarity=0.119 Sum_probs=54.3
Q ss_pred CCCeEEe---cccchh---hhhccCCccccccc---CCc-hhHHHHhhcCCCEeecCc------cccc------chhHHH
Q 011339 337 GRGILIL---GWAPQV---LILSHPSIGGFLTH---CSW-NSSLEGISAGVPLITWPL------YGDQ------FWNEKL 394 (488)
Q Consensus 337 ~~nv~~~---~~~pq~---~ll~~~~~~~~Ith---gG~-gs~~eal~~GvP~v~~P~------~~DQ------~~na~r 394 (488)
+.++.+. +++++. .+++.+++ ||.- =|+ .++.||+++|+|+|+--. .+|+ .++..-
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 4577776 445543 56778887 7753 344 588999999999998744 2333 233332
Q ss_pred HHH-HhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHcc
Q 011339 395 IVQ-VLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDE 438 (488)
Q Consensus 395 v~e-~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~ 438 (488)
.++ ..|.|..++ ..++++++++|.+++..
T Consensus 278 ~~~~~~g~g~~~~---------------~~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 278 YYDKEHGQKWKIH---------------KFQIEDMANAIILAFEL 307 (335)
T ss_pred hcCcccCceeeec---------------CCCHHHHHHHHHHHHhc
Confidence 211 234444443 37999999999998654
No 144
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=92.82 E-value=10 Score=36.92 Aligned_cols=171 Identities=17% Similarity=0.120 Sum_probs=90.6
Q ss_pred ccceEEEcCchhhhHHHHHHHHhhcCCce-EEeCCCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCc
Q 011339 208 KSYGIIINTFEELELEYVKECKKTKGGKV-WCLGPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSI 286 (488)
Q Consensus 208 ~~~~~l~~s~~~le~~~~~~~~~~~~~~~-~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~ 286 (488)
..+.+++..++.+. -++|+ ...|+++.-.++.... ....+...+... ++|.|-|-.|--
T Consensus 97 ~FDlvi~p~HD~~~----------~~~Nvl~t~ga~~~i~~~~l~~---------a~~~~~~~~~~l-~~p~~avLIGG~ 156 (311)
T PF06258_consen 97 PFDLVIVPEHDRLP----------RGPNVLPTLGAPNRITPERLAE---------AAAAWAPRLAAL-PRPRVAVLIGGD 156 (311)
T ss_pred ccCEEEECcccCcC----------CCCceEecccCCCcCCHHHHHH---------HHHhhhhhhccC-CCCeEEEEECcC
Confidence 34566676665432 23554 6678876654432111 111222223333 344666666643
Q ss_pred cC---CChHHHHHHHH----HHhcCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhc-CCCeEEecc---cchhhhhccC
Q 011339 287 CN---LTSSQMIELGL----GLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVK-GRGILILGW---APQVLILSHP 355 (488)
Q Consensus 287 ~~---~~~~~~~~~~~----a~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~nv~~~~~---~pq~~ll~~~ 355 (488)
.. .+.+....++. ..+..+..+....+.. ++.+... -+..... ...+.+.+- =|+...|+.+
T Consensus 157 s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRR--Tp~~~~~-----~L~~~~~~~~~~~~~~~~~~nPy~~~La~a 229 (311)
T PF06258_consen 157 SKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRR--TPPEAEA-----ALRELLKDNPGVYIWDGTGENPYLGFLAAA 229 (311)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCC--CcHHHHH-----HHHHhhcCCCceEEecCCCCCcHHHHHHhC
Confidence 32 45554444333 3334443444444443 3333222 2222221 233323222 3677889888
Q ss_pred CcccccccCCchhHHHHhhcCCCEeecCcccccch----hHHHHHHHhcceEEeccc
Q 011339 356 SIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQFW----NEKLIVQVLNIGVRIGVE 408 (488)
Q Consensus 356 ~~~~~IthgG~gs~~eal~~GvP~v~~P~~~DQ~~----na~rv~e~~G~G~~l~~~ 408 (488)
+. +|||=-..+.+.||+..|+|+.++|.-. +.. ..+.+ ++.|+-..++..
T Consensus 230 d~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L-~~~g~~r~~~~~ 283 (311)
T PF06258_consen 230 DA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSL-EERGAVRPFTGW 283 (311)
T ss_pred CE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHH-HHCCCEEECCCc
Confidence 87 5666666799999999999999999876 332 33445 467777666543
No 145
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=92.40 E-value=2.3 Score=34.72 Aligned_cols=47 Identities=17% Similarity=0.123 Sum_probs=38.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHH
Q 011339 11 HFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVA 57 (488)
Q Consensus 11 kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~ 57 (488)
||++.+.++..|.....-++..|.++|++|.+.......+.+.+.+.
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~ 47 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAK 47 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999999999999999988866544444444443
No 146
>PHA01630 putative group 1 glycosyl transferase
Probab=92.16 E-value=2.6 Score=41.42 Aligned_cols=39 Identities=10% Similarity=0.083 Sum_probs=28.0
Q ss_pred ccchhh---hhccCCccccc--cc-CC-chhHHHHhhcCCCEeecCcc
Q 011339 345 WAPQVL---ILSHPSIGGFL--TH-CS-WNSSLEGISAGVPLITWPLY 385 (488)
Q Consensus 345 ~~pq~~---ll~~~~~~~~I--th-gG-~gs~~eal~~GvP~v~~P~~ 385 (488)
++|+.+ +++.+++ +| ++ .| ..++.||+++|+|+|+.-..
T Consensus 197 ~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~g 242 (331)
T PHA01630 197 PLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKG 242 (331)
T ss_pred cCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCC
Confidence 366444 6788888 65 33 33 35899999999999998754
No 147
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=91.46 E-value=0.93 Score=38.19 Aligned_cols=51 Identities=16% Similarity=0.102 Sum_probs=43.4
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHh
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVAR 58 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~ 58 (488)
++.||++.+.++.+|-.-..-++..|.++|++|+++......+.+.+...+
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~ 52 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIE 52 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH
Confidence 788999999999999999999999999999999999886555555555443
No 148
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=91.19 E-value=16 Score=35.79 Aligned_cols=102 Identities=14% Similarity=0.115 Sum_probs=66.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeCCcchhhhHHHHHhhhcCCCCeEE-EEeeCCccccCCCCCCccc
Q 011339 11 HFVLFPFLAQGHMIPMIDTARLLAQH--GAAITIVTTPANAARFKTVVARAMQSGLPLQL-IEIQFPYQEAGVPEGCENF 87 (488)
Q Consensus 11 kvl~~~~~~~GHv~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~l~~~~~~~ 87 (488)
||+++-..+.|++.-+.++.++|++. +.+|+|++.+.+.+.++.. +.++- +.++ ...+
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~id~v~~~~-------~~~~---- 61 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM--------PEIRQAIDMP-------LGHG---- 61 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC--------chhceeeecC-------Cccc----
Confidence 58999999999999999999999997 8999999988655544322 23322 2111 0000
Q ss_pred cCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEE
Q 011339 88 DMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRIS 146 (488)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~ 146 (488)
... +. ....+...++. .++|++|.-........++...|+|.-.
T Consensus 62 ----~~~----~~-----~~~~~~~~lr~--~~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 62 ----ALE----LT-----ERRRLGRSLRE--ERYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred ----chh----hh-----HHHHHHHHHhh--cCCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 000 00 11234445565 6999999876655566677777887543
No 149
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=90.60 E-value=5.6 Score=40.68 Aligned_cols=125 Identities=10% Similarity=0.083 Sum_probs=78.0
Q ss_pred CCeEEEEeeCCccCCChHHHHHHHHHHhcCCC-CeEEEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEEe-cccc-h-hh
Q 011339 275 PNSVVYVCLGSICNLTSSQMIELGLGLEASKK-PFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILIL-GWAP-Q-VL 350 (488)
Q Consensus 275 ~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~-~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~-~~~p-q-~~ 350 (488)
.+.++++| +...+..+....++.+. .+=...+..- .+.|.+ + + .-.|++.. .+.+ + ..
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te~--s~kL~~--L-~------~y~nvvly~~~~~~~l~~ 343 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTEM--SSKLMS--L-D------KYDNVKLYPNITTQKIQE 343 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCcc--cHHHHH--H-H------hcCCcEEECCcChHHHHH
Confidence 44477776 24455555555555543 4433322221 122222 2 1 12566654 5566 3 56
Q ss_pred hhccCCcccccccCCc--hhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHH
Q 011339 351 ILSHPSIGGFLTHCSW--NSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDV 428 (488)
Q Consensus 351 ll~~~~~~~~IthgG~--gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l 428 (488)
++..|++-+-|+||.. .++.||+.+|+|++..=..... ...+. . |..... -+.+++
T Consensus 344 ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~---~~~i~-~---g~l~~~---------------~~~~~m 401 (438)
T TIGR02919 344 LYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHN---RDFIA-S---ENIFEH---------------NEVDQL 401 (438)
T ss_pred HHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCC---ccccc-C---CceecC---------------CCHHHH
Confidence 9999999999999875 7999999999999987654321 12331 2 444433 478999
Q ss_pred HHHHHHHHccC
Q 011339 429 VKAINILMDEG 439 (488)
Q Consensus 429 ~~ai~~~l~~~ 439 (488)
.++|.++|+|+
T Consensus 402 ~~~i~~lL~d~ 412 (438)
T TIGR02919 402 ISKLKDLLNDP 412 (438)
T ss_pred HHHHHHHhcCH
Confidence 99999999987
No 150
>PLN02939 transferase, transferring glycosyl groups
Probab=89.27 E-value=14 Score=41.30 Aligned_cols=84 Identities=13% Similarity=0.153 Sum_probs=53.5
Q ss_pred CCCeEEecccchh---hhhccCCccccccc---CCc-hhHHHHhhcCCCEeecCccc--ccchh--HHHHHHHhcceEEe
Q 011339 337 GRGILILGWAPQV---LILSHPSIGGFLTH---CSW-NSSLEGISAGVPLITWPLYG--DQFWN--EKLIVQVLNIGVRI 405 (488)
Q Consensus 337 ~~nv~~~~~~pq~---~ll~~~~~~~~Ith---gG~-gs~~eal~~GvP~v~~P~~~--DQ~~n--a~rv~e~~G~G~~l 405 (488)
..+|.+..+.+.. .+++.+++ ||.- =|+ .+.+||+++|+|.|+....+ |--.+ ...+.+.-+-|...
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf 913 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF 913 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe
Confidence 3578877777754 47888888 7753 233 48899999999999876644 21111 11110122446555
Q ss_pred cccCCCCCCcccccccccCHHHHHHHHHHHHc
Q 011339 406 GVEVPLDFGEEEEIGVLVKKEDVVKAINILMD 437 (488)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~ 437 (488)
+. .+++.|.++|.+++.
T Consensus 914 ~~---------------~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 914 LT---------------PDEQGLNSALERAFN 930 (977)
T ss_pred cC---------------CCHHHHHHHHHHHHH
Confidence 43 488889999988774
No 151
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=89.18 E-value=0.5 Score=40.92 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=23.3
Q ss_pred CccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 19 AQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 19 ~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
..|=-.-+..|+++|+++||+|++++..
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~ 38 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPG 38 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 5555667899999999999999999887
No 152
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=89.05 E-value=5.7 Score=41.66 Aligned_cols=90 Identities=16% Similarity=0.210 Sum_probs=60.8
Q ss_pred CCeEEecccc--h-hhhhccCCcccccccC---CchhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCCC
Q 011339 338 RGILILGWAP--Q-VLILSHPSIGGFLTHC---SWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPL 411 (488)
Q Consensus 338 ~nv~~~~~~p--q-~~ll~~~~~~~~Ithg---G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~ 411 (488)
..|.+.++.. + ..++..+.+ +|.=+ |.++..||+.+|+|+| .......| +...=|.-+ .
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V-~d~~NG~li--~--- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYV-EHNKNGYII--D--- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceee-EcCCCcEEe--C---
Confidence 4677777776 3 447777777 88766 6789999999999999 33344445 344445555 2
Q ss_pred CCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHH
Q 011339 412 DFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQI 454 (488)
Q Consensus 412 ~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~ 454 (488)
+.++|.++|..+|.+.+.-+.+...+-+.++
T Consensus 474 ------------d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~ 504 (519)
T TIGR03713 474 ------------DISELLKALDYYLDNLKNWNYSLAYSIKLID 504 (519)
T ss_pred ------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 6789999999999987433344444444333
No 153
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=88.22 E-value=2.5 Score=43.58 Aligned_cols=104 Identities=14% Similarity=0.098 Sum_probs=67.6
Q ss_pred ecccchhh---hhccCCcccccc---cCCch-hHHHHhhcCCC----EeecCcccccchhHHHHHHHhcceEEecccCCC
Q 011339 343 LGWAPQVL---ILSHPSIGGFLT---HCSWN-SSLEGISAGVP----LITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPL 411 (488)
Q Consensus 343 ~~~~pq~~---ll~~~~~~~~It---hgG~g-s~~eal~~GvP----~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~ 411 (488)
...+++.+ ++..+++ ||. +=|+| ++.||+++|+| +|+--+.+ .+..+ +-|..++.
T Consensus 341 ~~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G----~~~~l----~~gllVnP---- 406 (456)
T TIGR02400 341 NRSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAG----AAQEL----NGALLVNP---- 406 (456)
T ss_pred cCCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCC----ChHHh----CCcEEECC----
Confidence 34556654 5677777 765 44664 78899999999 66555443 22223 24666654
Q ss_pred CCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 011339 412 DFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETRSSSLMIKLLIQDIM 478 (488)
Q Consensus 412 ~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~ 478 (488)
.+.++++++|.++|+++. +..+++.+++++.+. .-+...-+++++.++.
T Consensus 407 -----------~d~~~lA~aI~~aL~~~~--~er~~r~~~~~~~v~-----~~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 407 -----------YDIDGMADAIARALTMPL--EEREERHRAMMDKLR-----KNDVQRWREDFLSDLN 455 (456)
T ss_pred -----------CCHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhh
Confidence 589999999999998652 255555666666543 2566677777777663
No 154
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=85.71 E-value=5.9 Score=37.28 Aligned_cols=91 Identities=18% Similarity=0.190 Sum_probs=54.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhh-hHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCcccc
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAAR-FKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFD 88 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~ 88 (488)
|||+++..-+. -..|+++|.++||+|+..+....... +... ...... . +
T Consensus 1 m~ILvlGGT~e-----gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~--------g~~~v~-~----------------g 50 (256)
T TIGR00715 1 MTVLLMGGTVD-----SRAIAKGLIAQGIEILVTVTTSEGKHLYPIH--------QALTVH-T----------------G 50 (256)
T ss_pred CeEEEEechHH-----HHHHHHHHHhCCCeEEEEEccCCcccccccc--------CCceEE-E----------------C
Confidence 46766654333 56899999999999998776532111 1000 001110 0 0
Q ss_pred CCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCc------chHHHHHhcCCCcEEE
Q 011339 89 MLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYP------WTVDTAARFNIPRISF 147 (488)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~------~~~~~a~~lgiP~v~~ 147 (488)
.++ ...+.+++++ .++|+||--...+ -+..+|+.+|||++.+
T Consensus 51 ---~l~------------~~~l~~~l~~--~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 51 ---ALD------------PQELREFLKR--HSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred ---CCC------------HHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 000 2346677787 7999777443333 2567899999999996
No 155
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=85.65 E-value=1.3 Score=36.13 Aligned_cols=37 Identities=3% Similarity=-0.148 Sum_probs=26.4
Q ss_pred CEEEEEcCCCcc---CHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 10 PHFVLFPFLAQG---HMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 10 ~kvl~~~~~~~G---Hv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
|||+|+.-|-.+ .-.-+++++.+-++|||+|.++...
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~ 40 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPG 40 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcC
Confidence 688888877544 3456899999999999999999776
No 156
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=84.60 E-value=11 Score=31.69 Aligned_cols=43 Identities=19% Similarity=0.153 Sum_probs=37.9
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchh
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAA 50 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 50 (488)
+++||++.+.+..||-.-.--+++.|++.|.+|.....-...+
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~ 53 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPE 53 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHH
Confidence 7899999999999999999999999999999999876543333
No 157
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=84.15 E-value=4.1 Score=42.12 Aligned_cols=104 Identities=17% Similarity=0.210 Sum_probs=60.2
Q ss_pred Eecccchhh---hhccCCcccccc---cCCch-hHHHHhhcCCC----EeecCcccccchhHHHHHHHhcceEEecccCC
Q 011339 342 ILGWAPQVL---ILSHPSIGGFLT---HCSWN-SSLEGISAGVP----LITWPLYGDQFWNEKLIVQVLNIGVRIGVEVP 410 (488)
Q Consensus 342 ~~~~~pq~~---ll~~~~~~~~It---hgG~g-s~~eal~~GvP----~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~ 410 (488)
+.+++++.+ ++..+++ ||. +-|+| ++.||+++|+| +|+--..+ . . +...-|..++.
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G-~------~-~~~~~g~lv~p--- 411 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG-A------A-EELSGALLVNP--- 411 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc-c------h-hhcCCCEEECC---
Confidence 345666654 5778887 663 45654 77899999999 54432221 1 1 11123555554
Q ss_pred CCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 011339 411 LDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETRSSSLMIKLLIQDI 477 (488)
Q Consensus 411 ~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~ 477 (488)
.+.++++++|.++++++.+ ..+++.++.++.+. .-+...-+++++.++
T Consensus 412 ------------~d~~~la~ai~~~l~~~~~--e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 412 ------------YDIDEVADAIHRALTMPLE--ERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred ------------CCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 5889999999999987621 22333333333322 245555566666554
No 158
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=83.67 E-value=11 Score=33.97 Aligned_cols=50 Identities=16% Similarity=0.099 Sum_probs=40.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHh
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVAR 58 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~ 58 (488)
+.||++.+.++..|-....-++..|..+|++|+++......+.+.+.+.+
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~ 131 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKE 131 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999999999999999988765444445444433
No 159
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=83.58 E-value=8.5 Score=38.04 Aligned_cols=103 Identities=12% Similarity=-0.018 Sum_probs=68.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEE-EeeCCccccCCCCCCcc
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQH--GAAITIVTTPANAARFKTVVARAMQSGLPLQLI-EIQFPYQEAGVPEGCEN 86 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~l~~~~~~ 86 (488)
|||+++-..+.|++.-++++.+.|+++ +.+|+|++.+.+.+.++.. +.++.+ .++ .. .
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~vd~vi~~~---------~~-~- 61 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM--------PEVNEAIPMP---------LG-H- 61 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC--------CccCEEEecc---------cc-c-
Confidence 689999999999999999999999997 8999999998666655432 234322 111 00 0
Q ss_pred ccCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEE
Q 011339 87 FDMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRIS 146 (488)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~ 146 (488)
.. . .+. ....+...++. .++|++|.=....-...++...|+|.-+
T Consensus 62 ----~~-~---~~~-----~~~~l~~~lr~--~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 62 ----GA-L---EIG-----ERRRLGHSLRE--KRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred ----ch-h---hhH-----HHHHHHHHHHh--cCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 00 0 000 01233445666 6999999765555566777888887654
No 160
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=83.02 E-value=8.3 Score=36.13 Aligned_cols=39 Identities=15% Similarity=0.060 Sum_probs=26.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchh
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAA 50 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 50 (488)
||||++.==+. |---+..|+++|++ +|+|+++++....+
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~S 39 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRS 39 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 57777763222 12227889999975 68999998875544
No 161
>PRK06849 hypothetical protein; Provisional
Probab=82.50 E-value=12 Score=37.59 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=29.1
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCc
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPA 47 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (488)
.+++|+++...+ ...+.+|+.|.++||+|.++....
T Consensus 3 ~~~~VLI~G~~~----~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGARA----PAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCCCc----HHHHHHHHHHHHCCCEEEEEeCCc
Confidence 678899886433 258999999999999999987753
No 162
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=82.39 E-value=12 Score=35.15 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=29.1
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchh
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAA 50 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 50 (488)
++||||++.=-+.- ---+..|+++|.+.| +|+++++....+
T Consensus 4 ~~M~ILltNDDGi~-a~Gi~aL~~~l~~~g-~V~VvAP~~~~S 44 (257)
T PRK13932 4 KKPHILVCNDDGIE-GEGIHVLAASMKKIG-RVTVVAPAEPHS 44 (257)
T ss_pred CCCEEEEECCCCCC-CHHHHHHHHHHHhCC-CEEEEcCCCCCC
Confidence 67899988742221 134788899999888 799998875444
No 163
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=82.27 E-value=2.3 Score=35.38 Aligned_cols=45 Identities=16% Similarity=0.084 Sum_probs=35.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHH
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTV 55 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (488)
+||++...|+.+=.. ...+.++|.++|++|.++.++.-...+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhh
Confidence 578888888877777 999999999999999999998655555443
No 164
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=81.96 E-value=16 Score=32.97 Aligned_cols=87 Identities=13% Similarity=0.041 Sum_probs=47.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCC--CeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCcc
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHG--AAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCEN 86 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rG--H~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~ 86 (488)
||||++++.+..+- +.+|.+++.+.+ ++|.++.+............. .++.+..++. ...
T Consensus 1 m~ki~vl~sg~gs~---~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~-----~gIp~~~~~~--------~~~-- 62 (200)
T PRK05647 1 MKRIVVLASGNGSN---LQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEA-----AGIPTFVLDH--------KDF-- 62 (200)
T ss_pred CceEEEEEcCCChh---HHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHH-----cCCCEEEECc--------ccc--
Confidence 68999999866433 345666677654 778776444222222222222 2666655431 000
Q ss_pred ccCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCC
Q 011339 87 FDMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTC 129 (488)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~ 129 (488)
.. .......+.+.++. .+||++|+-.+
T Consensus 63 ----~~----------~~~~~~~~~~~l~~--~~~D~iv~~~~ 89 (200)
T PRK05647 63 ----PS----------REAFDAALVEALDA--YQPDLVVLAGF 89 (200)
T ss_pred ----Cc----------hhHhHHHHHHHHHH--hCcCEEEhHHh
Confidence 00 01123355667777 79999998655
No 165
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=81.42 E-value=15 Score=33.02 Aligned_cols=51 Identities=12% Similarity=-0.055 Sum_probs=43.0
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHh
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVAR 58 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~ 58 (488)
...||++.+.++..|-....-++.-|..+|++|+++....-.+.+.+.+.+
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~ 133 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKK 133 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999999999999999999887655555555544
No 166
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=81.19 E-value=15 Score=29.29 Aligned_cols=84 Identities=13% Similarity=0.172 Sum_probs=55.2
Q ss_pred cCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCccccCCCchhhHHHHH
Q 011339 21 GHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFDMLHSTDLVSNFF 100 (488)
Q Consensus 21 GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 100 (488)
.+-.-++.+++.|.+.|+++ + +++.....+++. ++....+..+ ..
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l-~-aT~gT~~~l~~~---------gi~~~~v~~~------~~------------------ 54 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKL-V-ATEGTAKYLQEA---------GIPVEVVNKV------SE------------------ 54 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEE-E-EchHHHHHHHHc---------CCeEEEEeec------CC------------------
Confidence 35567889999999999997 3 455455555543 5665444211 10
Q ss_pred HHHHHhhHHHHHHHHhcCCCCeEEEEcCC-------CcchHHHHHhcCCCcEE
Q 011339 101 KSLRLLQLPLENLLKELTPKPSCIVSDTC-------YPWTVDTAARFNIPRIS 146 (488)
Q Consensus 101 ~~~~~~~~~l~~~l~~~~~~pD~vv~D~~-------~~~~~~~a~~lgiP~v~ 146 (488)
-...+.+.+++ .++|+||...- .+.....|-.+|||+++
T Consensus 55 -----~~~~i~~~i~~--~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 55 -----GRPNIVDLIKN--GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred -----CchhHHHHHHc--CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 12346667777 79999998542 23456678899999986
No 167
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=80.58 E-value=13 Score=34.58 Aligned_cols=113 Identities=25% Similarity=0.283 Sum_probs=59.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCccccC
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFDM 89 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~ 89 (488)
||||+..==+ =|.--+..|+++|. .+++|+++++..+.+-....+.- ...++...+. ........
T Consensus 1 mrILlTNDDG-i~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slTl----~~Plr~~~~~---------~~~~av~G 65 (252)
T COG0496 1 MRILLTNDDG-IHAPGIRALARALR-EGADVTVVAPDREQSGASHSLTL----HEPLRVRQVD---------NGAYAVNG 65 (252)
T ss_pred CeEEEecCCc-cCCHHHHHHHHHHh-hCCCEEEEccCCCCccccccccc----ccCceeeEec---------cceEEecC
Confidence 5666655322 13333677888888 99999999998655443222110 0112221111 11111110
Q ss_pred CCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcC----------CCc---chHHHHHhcCCCcEEEecc
Q 011339 90 LHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDT----------CYP---WTVDTAARFNIPRISFHGF 150 (488)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~----------~~~---~~~~~a~~lgiP~v~~~~~ 150 (488)
.+. +-..-.+..++++ .+||+||+-. ++. +|+.=|..+|||.+.++..
T Consensus 66 TPa-----------DCV~lal~~l~~~--~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 66 TPA-----------DCVILGLNELLKE--PRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred ChH-----------HHHHHHHHHhccC--CCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 110 1123456667666 5799999743 222 4455567789999887544
No 168
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=79.76 E-value=9.6 Score=30.87 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=38.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHH
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVA 57 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~ 57 (488)
.|+++.+.+...|-.-+..|+..|.++||+|.++-.....+.+.+.+.
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~ 48 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALR 48 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHH
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHh
Confidence 378999999999999999999999999999999866544444444443
No 169
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=79.26 E-value=2.8 Score=32.68 Aligned_cols=84 Identities=24% Similarity=0.299 Sum_probs=47.3
Q ss_pred HHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCccccCCCchhhHHHHHHHHHH
Q 011339 26 MIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFDMLHSTDLVSNFFKSLRL 105 (488)
Q Consensus 26 ~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (488)
++.+|+.|.+.||+ +++++.....+++. |+....+... ...+ +.. +.
T Consensus 2 ~~~~a~~l~~lG~~--i~AT~gTa~~L~~~---------Gi~~~~v~~~-----~~~~-~~~------~g---------- 48 (95)
T PF02142_consen 2 IVPLAKRLAELGFE--IYATEGTAKFLKEH---------GIEVTEVVNK-----IGEG-ESP------DG---------- 48 (95)
T ss_dssp HHHHHHHHHHTTSE--EEEEHHHHHHHHHT---------T--EEECCEE-----HSTG--GG------TH----------
T ss_pred HHHHHHHHHHCCCE--EEEChHHHHHHHHc---------CCCceeeeee-----cccC-ccC------Cc----------
Confidence 57899999999976 45555555556544 6664433100 0000 000 00
Q ss_pred hhHHHHHHHHhcCCCCeEEEEcCCCcc---------hHHHHHhcCCCcE
Q 011339 106 LQLPLENLLKELTPKPSCIVSDTCYPW---------TVDTAARFNIPRI 145 (488)
Q Consensus 106 ~~~~l~~~l~~~~~~pD~vv~D~~~~~---------~~~~a~~lgiP~v 145 (488)
...+.+++++ .+.|+||....... -..+|...+||++
T Consensus 49 -~~~i~~~i~~--~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 49 -RVQIMDLIKN--GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp -CHHHHHHHHT--TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred -hhHHHHHHHc--CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 0167778888 89999998875431 1456777788875
No 170
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=78.40 E-value=35 Score=27.85 Aligned_cols=45 Identities=13% Similarity=0.044 Sum_probs=37.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHH
Q 011339 11 HFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTV 55 (488)
Q Consensus 11 kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (488)
||++.+.++..|..-..-++.-|...|++|.+.....-.+.+...
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~ 45 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEA 45 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 589999999999999999999999999999999876444444333
No 171
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=78.05 E-value=5.8 Score=34.18 Aligned_cols=39 Identities=13% Similarity=0.149 Sum_probs=34.6
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEE-EEeCC
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAIT-IVTTP 46 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt-~~~~~ 46 (488)
.+|||++...|+-|-.--.+.++..|.++|+.|- |+|++
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~E 43 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPE 43 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeee
Confidence 4689999999999999999999999999999997 45554
No 172
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=77.99 E-value=15 Score=28.10 Aligned_cols=79 Identities=19% Similarity=0.271 Sum_probs=46.6
Q ss_pred HHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCccccCCCchhhHHHHHHHHHH
Q 011339 26 MIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFDMLHSTDLVSNFFKSLRL 105 (488)
Q Consensus 26 ~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (488)
++.+++.|++.|++| ++|. .....+++. |+....... .+.++
T Consensus 2 ~~~~~~~l~~lG~~i-~AT~-gTa~~L~~~---------Gi~~~~~~~-----ki~~~---------------------- 43 (90)
T smart00851 2 LVELAKRLAELGFEL-VATG-GTAKFLREA---------GLPVKTLHP-----KVHGG---------------------- 43 (90)
T ss_pred HHHHHHHHHHCCCEE-EEcc-HHHHHHHHC---------CCcceeccC-----CCCCC----------------------
Confidence 468999999999997 3444 444444432 554321110 00010
Q ss_pred hhHHHHHHHHhcCCCCeEEEEcCCC---------cchHHHHHhcCCCcE
Q 011339 106 LQLPLENLLKELTPKPSCIVSDTCY---------PWTVDTAARFNIPRI 145 (488)
Q Consensus 106 ~~~~l~~~l~~~~~~pD~vv~D~~~---------~~~~~~a~~lgiP~v 145 (488)
...+.++++. .++|+||..... ..-..+|-..+||++
T Consensus 44 -~~~i~~~i~~--g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 44 -ILAILDLIKN--GEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred -CHHHHHHhcC--CCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 0136667777 799999986531 134556888888875
No 173
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.09 E-value=8.7 Score=36.55 Aligned_cols=80 Identities=18% Similarity=0.250 Sum_probs=45.2
Q ss_pred hhhhhccCCcccccccCCchhHH-HHhhcCCCEeecCcccccch--hHHHHHHHhcceEEecccCCCCCCcccccccccC
Q 011339 348 QVLILSHPSIGGFLTHCSWNSSL-EGISAGVPLITWPLYGDQFW--NEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVK 424 (488)
Q Consensus 348 q~~ll~~~~~~~~IthgG~gs~~-eal~~GvP~v~~P~~~DQ~~--na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~ 424 (488)
..++|.++++ .|--. ||.. .++-.|+|+|.+|-.+-|+. .|.|=..-+|+.+.+-.. .
T Consensus 305 fadiLH~ada--algmA--GTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~---------------~ 365 (412)
T COG4370 305 FADILHAADA--ALGMA--GTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRP---------------E 365 (412)
T ss_pred HHHHHHHHHH--HHHhc--cchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCC---------------c
Confidence 3445544444 33332 2333 35678999999999999876 344432234555555332 3
Q ss_pred HHHHHHHHHHHHccCcchHHHHHHHH
Q 011339 425 KEDVVKAINILMDEGGETDDRRKRAR 450 (488)
Q Consensus 425 ~~~l~~ai~~~l~~~~~~~~~~~~a~ 450 (488)
++.-..++.++|.|+ .+.++++
T Consensus 366 aq~a~~~~q~ll~dp----~r~~air 387 (412)
T COG4370 366 AQAAAQAVQELLGDP----QRLTAIR 387 (412)
T ss_pred hhhHHHHHHHHhcCh----HHHHHHH
Confidence 333333444599999 5555554
No 174
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=77.02 E-value=23 Score=31.24 Aligned_cols=104 Identities=14% Similarity=0.071 Sum_probs=54.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCe--EE-EEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCcc
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAA--IT-IVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCEN 86 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~--Vt-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~ 86 (488)
|||+|+..++. ..+..+.++|.+++|+ |. +++.+........... .++....+.. ..
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~------~~~~~~~~~~--------~~--- 60 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIK------NGIPAQVADE--------KN--- 60 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHH------TTHHEEEHHG--------GG---
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEecccccccccccccc------CCCCEEeccc--------cC---
Confidence 68999876555 5566778899999998 44 3444433322111111 1232222210 00
Q ss_pred ccCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCc-chHHHHHhcCCCcEEEe
Q 011339 87 FDMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYP-WTVDTAARFNIPRISFH 148 (488)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~-~~~~~a~~lgiP~v~~~ 148 (488)
.. ......+++.+.+++ .+||++|+-.+.. ....+........+-++
T Consensus 61 ---~~----------~~~~~~~~~~~~l~~--~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiH 108 (181)
T PF00551_consen 61 ---FQ----------PRSENDEELLELLES--LNPDLIVVAGYGRILPKEFLSIPPYGIINIH 108 (181)
T ss_dssp ---SS----------SHHHHHHHHHHHHHH--TT-SEEEESS-SS---HHHHHHSTTSEEEEE
T ss_pred ---CC----------chHhhhhHHHHHHHh--hccceeehhhhHHHhhhhhhhcccccEEEEe
Confidence 00 011234567788888 8999999887642 34445555555555543
No 175
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=76.40 E-value=11 Score=41.87 Aligned_cols=102 Identities=14% Similarity=0.134 Sum_probs=63.1
Q ss_pred hhhhccCCcccccc---cCCch-hHHHHhhcCCC---EeecCcccccchhHHHHHHHhc-ceEEecccCCCCCCcccccc
Q 011339 349 VLILSHPSIGGFLT---HCSWN-SSLEGISAGVP---LITWPLYGDQFWNEKLIVQVLN-IGVRIGVEVPLDFGEEEEIG 420 (488)
Q Consensus 349 ~~ll~~~~~~~~It---hgG~g-s~~eal~~GvP---~v~~P~~~DQ~~na~rv~e~~G-~G~~l~~~~~~~~~~~~~~~ 420 (488)
.+++..+++ ||. +-|+| +..|++++|+| ++++.-+ -..+. .+| -|+.+++
T Consensus 370 ~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~---~G~~~----~l~~~allVnP------------- 427 (797)
T PLN03063 370 CALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEF---AGAGQ----SLGAGALLVNP------------- 427 (797)
T ss_pred HHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCC---cCchh----hhcCCeEEECC-------------
Confidence 356777887 764 44886 77799999999 3444322 22222 333 3666665
Q ss_pred cccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCC
Q 011339 421 VLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETRSSSLMIKLLIQDIMQQP 481 (488)
Q Consensus 421 ~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~~~ 481 (488)
.+.++++++|.++|+.+. +..+++.+++.+.+. .-+...-++.+++++.+..
T Consensus 428 --~D~~~lA~AI~~aL~m~~--~er~~r~~~~~~~v~-----~~~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 428 --WNITEVSSAIKEALNMSD--EERETRHRHNFQYVK-----THSAQKWADDFMSELNDII 479 (797)
T ss_pred --CCHHHHHHHHHHHHhCCH--HHHHHHHHHHHHhhh-----hCCHHHHHHHHHHHHHHHh
Confidence 589999999999998331 144445555555544 2345566667777665543
No 176
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=75.65 E-value=30 Score=31.58 Aligned_cols=51 Identities=12% Similarity=0.068 Sum_probs=42.3
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHh
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVAR 58 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~ 58 (488)
+..||++.+.++..|-....-++..|..+|++|+++....-.+.+.+.+.+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~ 137 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKE 137 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999999999999999999876555555454433
No 177
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=75.26 E-value=74 Score=29.97 Aligned_cols=81 Identities=19% Similarity=0.335 Sum_probs=53.3
Q ss_pred CCCeEEecccc---hhhhhccCCccccccc---CCch-hHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccC
Q 011339 337 GRGILILGWAP---QVLILSHPSIGGFLTH---CSWN-SSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEV 409 (488)
Q Consensus 337 ~~nv~~~~~~p---q~~ll~~~~~~~~Ith---gG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~ 409 (488)
..++....+++ ...++..+++ ++.- .|.| ++.|++++|+|+|.... ......+ ...+.|. +...
T Consensus 256 ~~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~-~~~~~g~-~~~~- 326 (381)
T COG0438 256 EDNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVV-EDGETGL-LVPP- 326 (381)
T ss_pred CCcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCC----CChHHHh-cCCCceE-ecCC-
Confidence 46778888888 3346776776 5555 3554 46999999999976655 3233333 2332355 3332
Q ss_pred CCCCCcccccccccCHHHHHHHHHHHHccC
Q 011339 410 PLDFGEEEEIGVLVKKEDVVKAINILMDEG 439 (488)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~ 439 (488)
.+.+.+.+++..++++.
T Consensus 327 -------------~~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 327 -------------GDVEELADALEQLLEDP 343 (381)
T ss_pred -------------CCHHHHHHHHHHHhcCH
Confidence 36899999999999875
No 178
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=74.21 E-value=33 Score=33.50 Aligned_cols=41 Identities=24% Similarity=0.239 Sum_probs=33.3
Q ss_pred CCEEEEEcC-CCccCHHHHHHHHHHHHHCCCeEEEEeCCcch
Q 011339 9 QPHFVLFPF-LAQGHMIPMIDTARLLAQHGAAITIVTTPANA 49 (488)
Q Consensus 9 ~~kvl~~~~-~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~ 49 (488)
++||+|++. |+-|-..-..++|-.|++.|..|.++++++..
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAh 42 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAH 42 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCC
Confidence 467877776 78999888889999999999988888776443
No 179
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=73.52 E-value=8.8 Score=33.27 Aligned_cols=110 Identities=21% Similarity=0.278 Sum_probs=62.8
Q ss_pred EEEEEcCCCccCHHH----HHHHHHHHHHC-CCeEEEEeCCc---chhhhHHHHHhhhcCCCCeE-EEEeeCCccccCCC
Q 011339 11 HFVLFPFLAQGHMIP----MIDTARLLAQH-GAAITIVTTPA---NAARFKTVVARAMQSGLPLQ-LIEIQFPYQEAGVP 81 (488)
Q Consensus 11 kvl~~~~~~~GHv~p----~l~LA~~L~~r-GH~Vt~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~l~ 81 (488)
+|+++.-...|.++| ++..|++|++. |.+|+.++... ..+.++..+..+ |.. .+.+..+...
T Consensus 1 ~ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~-----G~d~v~~~~~~~~~---- 71 (164)
T PF01012_consen 1 NILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKY-----GADKVYHIDDPALA---- 71 (164)
T ss_dssp EEEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHST-----TESEEEEEE-GGGT----
T ss_pred CEEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhc-----CCcEEEEecCcccc----
Confidence 355555555677776 78889999986 78888775542 233333333222 443 4444311000
Q ss_pred CCCccccCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCc---chHHHHHhcCCCcEEEec
Q 011339 82 EGCENFDMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYP---WTVDTAARFNIPRISFHG 149 (488)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~---~~~~~a~~lgiP~v~~~~ 149 (488)
. + ........+.+++++ .+||+|+.-.... .+..+|.++|.|+++-..
T Consensus 72 -~-----------~------~~~~~a~~l~~~~~~--~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 72 -E-----------Y------DPEAYADALAELIKE--EGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp -T-----------C-------HHHHHHHHHHHHHH--HT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred -c-----------c------CHHHHHHHHHHHHHh--cCCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 0 0 012235667777777 7999999876543 577899999999988533
No 180
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=73.11 E-value=54 Score=32.14 Aligned_cols=83 Identities=14% Similarity=0.033 Sum_probs=61.9
Q ss_pred CCCeEE-ecccc---hhhhhccCCccccccc--CCchhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCC
Q 011339 337 GRGILI-LGWAP---QVLILSHPSIGGFLTH--CSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVP 410 (488)
Q Consensus 337 ~~nv~~-~~~~p---q~~ll~~~~~~~~Ith--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~ 410 (488)
..|+.+ .+++| +.++|..|++.+|.+. =|+|+++-.|+.|+|++.- .+...-+-+ .+.|+-+-...+
T Consensus 244 ~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~----~~np~~~~l-~~~~ipVlf~~d-- 316 (360)
T PF07429_consen 244 AENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS----RDNPFWQDL-KEQGIPVLFYGD-- 316 (360)
T ss_pred ccceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe----cCChHHHHH-HhCCCeEEeccc--
Confidence 356654 56877 5679999999877774 5899999999999999864 333344455 366777766545
Q ss_pred CCCCcccccccccCHHHHHHHHHHHHc
Q 011339 411 LDFGEEEEIGVLVKKEDVVKAINILMD 437 (488)
Q Consensus 411 ~~~~~~~~~~~~~~~~~l~~ai~~~l~ 437 (488)
.++.+.|++|=+++..
T Consensus 317 -----------~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 317 -----------ELDEALVREAQRQLAN 332 (360)
T ss_pred -----------cCCHHHHHHHHHHHhh
Confidence 5999999999887764
No 181
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=73.10 E-value=22 Score=33.31 Aligned_cols=90 Identities=19% Similarity=0.219 Sum_probs=56.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCcccc
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFD 88 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~ 88 (488)
|++|+++..-+.| ..||+.|.++|+.|++.+...... .. ..+.... .+
T Consensus 2 ~~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~~---------~~~~~v~-----------------~G 49 (248)
T PRK08057 2 MPRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-PA---------DLPGPVR-----------------VG 49 (248)
T ss_pred CceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-cc---------cCCceEE-----------------EC
Confidence 5678888776665 468999999999988776552211 00 0011111 01
Q ss_pred CCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCc-------chHHHHHhcCCCcEEE
Q 011339 89 MLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYP-------WTVDTAARFNIPRISF 147 (488)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~-------~~~~~a~~lgiP~v~~ 147 (488)
... -.+.+.+++++ .++++|| |+.-+ -+..+|+.+|||++.|
T Consensus 50 ~l~--------------~~~~l~~~l~~--~~i~~VI-DATHPfA~~is~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 50 GFG--------------GAEGLAAYLRE--EGIDLVI-DATHPYAAQISANAAAACRALGIPYLRL 98 (248)
T ss_pred CCC--------------CHHHHHHHHHH--CCCCEEE-ECCCccHHHHHHHHHHHHHHhCCcEEEE
Confidence 110 14567778888 7999977 44322 2567899999999997
No 182
>PRK12342 hypothetical protein; Provisional
Probab=72.86 E-value=42 Score=31.55 Aligned_cols=42 Identities=7% Similarity=-0.050 Sum_probs=30.6
Q ss_pred hHHHHHHHHhcCCCCeEEEEcCCCc------chHHHHHhcCCCcEEEecc
Q 011339 107 QLPLENLLKELTPKPSCIVSDTCYP------WTVDTAARFNIPRISFHGF 150 (488)
Q Consensus 107 ~~~l~~~l~~~~~~pD~vv~D~~~~------~~~~~a~~lgiP~v~~~~~ 150 (488)
...|...++. ..||+|++-..+. -+..+|+.+|+|++++...
T Consensus 98 a~~La~~i~~--~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 98 AKALAAAIEK--IGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHHHH--hCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 3445556666 4699999865433 3788999999999997544
No 183
>PRK14098 glycogen synthase; Provisional
Probab=72.72 E-value=6.2 Score=41.15 Aligned_cols=39 Identities=10% Similarity=0.005 Sum_probs=30.3
Q ss_pred CCCEEEEEcCC------CccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 8 QQPHFVLFPFL------AQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 8 ~~~kvl~~~~~------~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
+||||++++.- +.|=-.-+-+|.++|+++||+|.++.+.
T Consensus 4 ~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~ 48 (489)
T PRK14098 4 RNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPK 48 (489)
T ss_pred CCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 78999999841 2333344678899999999999999884
No 184
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=72.46 E-value=49 Score=33.87 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=28.3
Q ss_pred hHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEE
Q 011339 107 QLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISF 147 (488)
Q Consensus 107 ~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~ 147 (488)
..++.+.++. .+||++|.... ...+|+++|+|++.+
T Consensus 366 ~~e~~~~i~~--~~pDliiG~s~---~~~~a~~~gip~v~~ 401 (435)
T cd01974 366 LWHLRSLLFT--EPVDLLIGNTY---GKYIARDTDIPLVRF 401 (435)
T ss_pred HHHHHHHHhh--cCCCEEEECcc---HHHHHHHhCCCEEEe
Confidence 3456666777 69999998854 678999999999875
No 185
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=72.01 E-value=89 Score=29.40 Aligned_cols=96 Identities=16% Similarity=0.209 Sum_probs=56.6
Q ss_pred EEEEeeCCccC--CChHHHH----HHHHHHhcCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEE-----eccc
Q 011339 278 VVYVCLGSICN--LTSSQMI----ELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILI-----LGWA 346 (488)
Q Consensus 278 vV~vs~Gs~~~--~~~~~~~----~~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~-----~~~~ 346 (488)
|.++-.|+... ..++... .+...++..+..|+.+++... +...+. -+++.....-+++ .++=
T Consensus 164 vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRT--p~~~~s-----~l~~~l~s~~~i~w~~~d~g~N 236 (329)
T COG3660 164 VAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRRT--PDTVKS-----ILKNNLNSSPGIVWNNEDTGYN 236 (329)
T ss_pred EEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecCC--cHHHHH-----HHHhccccCceeEeCCCCCCCC
Confidence 44444555444 3333322 345666777888888887764 222111 1122122222232 2556
Q ss_pred chhhhhccCCcccccc-cCCchhHHHHhhcCCCEeec
Q 011339 347 PQVLILSHPSIGGFLT-HCSWNSSLEGISAGVPLITW 382 (488)
Q Consensus 347 pq~~ll~~~~~~~~It-hgG~gs~~eal~~GvP~v~~ 382 (488)
|+.+.|+.++. +|. --..|...||.+.|+|+.++
T Consensus 237 PY~~~La~Ady--ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 237 PYIDMLAAADY--IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred chHHHHhhcce--EEEecchhhhhHHHhccCCCeEEE
Confidence 99999998887 555 44568899999999998543
No 186
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=71.78 E-value=19 Score=32.84 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=32.9
Q ss_pred CCEEEEEcCC--CccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 9 QPHFVLFPFL--AQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 9 ~~kvl~~~~~--~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
|.+|.+++.+ +-|-..-+..|+-.|+++|+.|.++-..
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~D 40 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFD 40 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecC
Confidence 4578888874 8889999999999999999999999665
No 187
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=71.53 E-value=18 Score=31.84 Aligned_cols=46 Identities=11% Similarity=-0.073 Sum_probs=38.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHH
Q 011339 12 FVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVA 57 (488)
Q Consensus 12 vl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~ 57 (488)
+++...|+.|-..-.+.++.+.++.|..|.|++.+...+.+.+...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~ 47 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAE 47 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHH
Confidence 5777888999999999999999999999999999876666554433
No 188
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=71.50 E-value=14 Score=37.64 Aligned_cols=34 Identities=12% Similarity=0.020 Sum_probs=26.7
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
++||||++..++.-| +|++.|++-++-..+++.|
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~p 36 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFP 36 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEEC
Confidence 578999999998877 6899999988654555444
No 189
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=71.12 E-value=6.1 Score=35.53 Aligned_cols=41 Identities=12% Similarity=0.083 Sum_probs=30.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhh
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAAR 51 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~ 51 (488)
||||++.=-++ +---+..|+++|.+.||+|+++++..+.+-
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg 41 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSG 41 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTT
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcC
Confidence 67888876555 445588999999888899999999865544
No 190
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=70.85 E-value=12 Score=32.65 Aligned_cols=44 Identities=32% Similarity=0.403 Sum_probs=29.4
Q ss_pred HhhHHHHHHHHhcCCCCeEEEEcCCCcchH-H--H--HHhc-CCCcEEEecc
Q 011339 105 LLQLPLENLLKELTPKPSCIVSDTCYPWTV-D--T--AARF-NIPRISFHGF 150 (488)
Q Consensus 105 ~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~-~--~--a~~l-giP~v~~~~~ 150 (488)
.....+.+++++ .+||+||+...+.... . + ...+ ++|.+.+.|-
T Consensus 76 ~~~~~l~~~l~~--~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD 125 (169)
T PF06925_consen 76 LFARRLIRLLRE--FQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTD 125 (169)
T ss_pred HHHHHHHHHHhh--cCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcC
Confidence 455688899999 8999999998765333 1 1 2223 4777765443
No 191
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=70.24 E-value=4.5 Score=35.99 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=28.8
Q ss_pred CCCEEEEEcCCCccCHHH------------HHHHHHHHHHCCCeEEEEeCCc
Q 011339 8 QQPHFVLFPFLAQGHMIP------------MIDTARLLAQHGAAITIVTTPA 47 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p------------~l~LA~~L~~rGH~Vt~~~~~~ 47 (488)
+..||++++.|+.=.+.| -..||+++..+|++|+++..+.
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 345778777777766655 4789999999999999999983
No 192
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=69.82 E-value=63 Score=30.29 Aligned_cols=39 Identities=10% Similarity=0.019 Sum_probs=26.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchh
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAA 50 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 50 (488)
||||++.=-+. |---+.+|+++|++ +|+|+++++....+
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qS 39 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERS 39 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 56777664333 22337788999975 58999999875444
No 193
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=69.56 E-value=40 Score=31.61 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=27.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchh
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAA 50 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 50 (488)
||||++.==+. |.--+..|+++|.+. |+|+++++....+
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qS 39 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERS 39 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCc
Confidence 56776653222 233378899999998 7999999875444
No 194
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=69.19 E-value=26 Score=32.88 Aligned_cols=38 Identities=21% Similarity=0.464 Sum_probs=28.5
Q ss_pred hHHHHHHHHhcCCCCeEEEEcCCCc-------chHHHHHhcCCCcEEE
Q 011339 107 QLPLENLLKELTPKPSCIVSDTCYP-------WTVDTAARFNIPRISF 147 (488)
Q Consensus 107 ~~~l~~~l~~~~~~pD~vv~D~~~~-------~~~~~a~~lgiP~v~~ 147 (488)
.+.+.+++++ .++++|| |+.-+ -+..+|+.+|||++.+
T Consensus 55 ~~~l~~~l~~--~~i~~vI-DATHPfA~~is~na~~a~~~~~ipylR~ 99 (249)
T PF02571_consen 55 EEGLAEFLRE--NGIDAVI-DATHPFAAEISQNAIEACRELGIPYLRF 99 (249)
T ss_pred HHHHHHHHHh--CCCcEEE-ECCCchHHHHHHHHHHHHhhcCcceEEE
Confidence 4567778888 7999888 33222 3577899999999996
No 195
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=68.98 E-value=67 Score=27.87 Aligned_cols=43 Identities=26% Similarity=0.192 Sum_probs=32.1
Q ss_pred hhHHHHHHHHhcCCCCeEEEEcCCCc---chHHHHHhcCCCcEEEecc
Q 011339 106 LQLPLENLLKELTPKPSCIVSDTCYP---WTVDTAARFNIPRISFHGF 150 (488)
Q Consensus 106 ~~~~l~~~l~~~~~~pD~vv~D~~~~---~~~~~a~~lgiP~v~~~~~ 150 (488)
....+.+++++ .+||+|+.-.... .+..+|.++|.|+++-...
T Consensus 71 ~a~al~~~i~~--~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~~ 116 (168)
T cd01715 71 YAPALVALAKK--EKPSHILAGATSFGKDLAPRVAAKLDVGLISDVTA 116 (168)
T ss_pred HHHHHHHHHHh--cCCCEEEECCCccccchHHHHHHHhCCCceeeEEE
Confidence 35566677777 6899999877543 6788999999999885433
No 196
>PRK06988 putative formyltransferase; Provisional
Probab=68.00 E-value=46 Score=32.38 Aligned_cols=33 Identities=21% Similarity=0.436 Sum_probs=24.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
||||+|+..+.. .+...++|.++||+|..+.+.
T Consensus 2 ~mkIvf~Gs~~~-----a~~~L~~L~~~~~~i~~Vvt~ 34 (312)
T PRK06988 2 KPRAVVFAYHNV-----GVRCLQVLLARGVDVALVVTH 34 (312)
T ss_pred CcEEEEEeCcHH-----HHHHHHHHHhCCCCEEEEEcC
Confidence 579999976543 355667788889998877664
No 197
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=67.85 E-value=62 Score=33.34 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=31.0
Q ss_pred CCCEEEEEcC-CCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 8 QQPHFVLFPF-LAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 8 ~~~kvl~~~~-~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
+|.+|++... ..-|-..-+..|++.|+++|++|..+-+.
T Consensus 2 ~m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~G 41 (451)
T PRK01077 2 RMPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVG 41 (451)
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecC
Confidence 4556766654 46788889999999999999999988553
No 198
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=67.57 E-value=11 Score=33.82 Aligned_cols=42 Identities=10% Similarity=-0.001 Sum_probs=32.4
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcch
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANA 49 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~ 49 (488)
+.+||++--.|+.|=+.-...|+++|.++||+|.++.++.-.
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~ 45 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQ 45 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHH
Confidence 456787777765554444799999999999999999988543
No 199
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=67.46 E-value=16 Score=38.51 Aligned_cols=80 Identities=14% Similarity=0.057 Sum_probs=48.4
Q ss_pred chhhhhccCCcccccc---cCCch-hHHHHhhcCCCEeecCccc-ccchhHHHHHHHh-cceEEecccCCCCCCcccccc
Q 011339 347 PQVLILSHPSIGGFLT---HCSWN-SSLEGISAGVPLITWPLYG-DQFWNEKLIVQVL-NIGVRIGVEVPLDFGEEEEIG 420 (488)
Q Consensus 347 pq~~ll~~~~~~~~It---hgG~g-s~~eal~~GvP~v~~P~~~-DQ~~na~rv~e~~-G~G~~l~~~~~~~~~~~~~~~ 420 (488)
+..+++..|++ +|. +=|+| ++.||+++|+|+|+....+ ... +..+...- ..|+.+..... .+
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~--v~E~v~~~~~~gi~V~~r~~--------~~ 534 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCF--MEEHIEDPESYGIYIVDRRF--------KS 534 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhh--hHHHhccCCCceEEEecCCc--------cc
Confidence 35667778888 655 45654 8999999999999988743 222 12221111 24666653210 00
Q ss_pred cccCHHHHHHHHHHHHcc
Q 011339 421 VLVKKEDVVKAINILMDE 438 (488)
Q Consensus 421 ~~~~~~~l~~ai~~~l~~ 438 (488)
-.-+.++|++++.++++.
T Consensus 535 ~~e~v~~La~~m~~~~~~ 552 (590)
T cd03793 535 PDESVQQLTQYMYEFCQL 552 (590)
T ss_pred hHHHHHHHHHHHHHHhCC
Confidence 124677888888888853
No 200
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=67.46 E-value=54 Score=33.44 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=25.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 11 HFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 11 kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
|+.++..+.. .+.+++.|.+-|-+|..+++.
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~ 317 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLESGADVPYVGTA 317 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecC
Confidence 7777776655 888899999999999988666
No 201
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=66.83 E-value=47 Score=33.79 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=25.1
Q ss_pred HHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEEe
Q 011339 112 NLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISFH 148 (488)
Q Consensus 112 ~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~ 148 (488)
..++. .+||++|.. ..+..+|+++|||.+.+.
T Consensus 344 ~~~~~--~~pDl~Ig~---s~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 344 AAVEE--YRPDLAIGT---TPLVQYAKEKGIPALYYT 375 (416)
T ss_pred HHHhh--cCCCEEEeC---ChhhHHHHHhCCCEEEec
Confidence 44445 699999987 347779999999998863
No 202
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=66.72 E-value=78 Score=34.91 Aligned_cols=112 Identities=11% Similarity=0.054 Sum_probs=66.8
Q ss_pred EEecccchhh---hhccCCccccccc---CCch-hHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCCCCC
Q 011339 341 LILGWAPQVL---ILSHPSIGGFLTH---CSWN-SSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPLDF 413 (488)
Q Consensus 341 ~~~~~~pq~~---ll~~~~~~~~Ith---gG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~ 413 (488)
++.+++++.+ +++.+++ |+.- -|+| ++.|++++|+|-..+|+..+--.-+. .+.-|+.+++
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~----~l~~~llv~P------ 412 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA----ELAEALLVNP------ 412 (726)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhH----HhCcCeEECC------
Confidence 3556777654 6677777 6643 3654 77899999776333333222211122 2223666654
Q ss_pred CcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcC
Q 011339 414 GEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETRSSSLMIKLLIQDIMQQ 480 (488)
Q Consensus 414 ~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~~ 480 (488)
.+.++++++|.++|+++.+ ..+++.+++++.+. .-+...-++++++.+.+.
T Consensus 413 ---------~d~~~la~ai~~~l~~~~~--e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 413 ---------NDIEGIAAAIKRALEMPEE--EQRERMQAMQERLR-----RYDVHKWASDFLDELREA 463 (726)
T ss_pred ---------CCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHH
Confidence 5899999999999986521 33444444444432 356677777777776654
No 203
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=66.38 E-value=8.9 Score=34.03 Aligned_cols=44 Identities=16% Similarity=0.118 Sum_probs=35.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhH
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFK 53 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 53 (488)
|.||++...++.|=+. ...+.+.|.++|++|.++.++.-...+.
T Consensus 1 ~k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 1 MKNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFIT 44 (182)
T ss_pred CCEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcC
Confidence 4678888777766655 8999999999999999999886555544
No 204
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=66.37 E-value=11 Score=28.20 Aligned_cols=36 Identities=19% Similarity=0.108 Sum_probs=31.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTT 45 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~ 45 (488)
..++++..+...|...+-.+|+.|+++|+.|...-.
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~ 51 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDH 51 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 557888889999999999999999999999886633
No 205
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=66.26 E-value=11 Score=35.41 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=39.7
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHH
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKT 54 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~ 54 (488)
+...++|+..|+.|-..=..+||++|.++|+.|+|++.+.....++.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKA 150 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 34578999999999999999999999988999999999865555543
No 206
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=65.94 E-value=25 Score=31.30 Aligned_cols=99 Identities=13% Similarity=0.235 Sum_probs=48.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeCCcchhh-hHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCcccc
Q 011339 12 FVLFPFLAQGHMIPMIDTARLLAQH--GAAITIVTTPANAAR-FKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFD 88 (488)
Q Consensus 12 vl~~~~~~~GHv~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~ 88 (488)
++.+=..+-|-++-..+|+++|.++ |+.|.+-++...... .++.... .+....+|.
T Consensus 23 ~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~------~v~~~~~P~--------------- 81 (186)
T PF04413_consen 23 LIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPD------RVDVQYLPL--------------- 81 (186)
T ss_dssp -EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GG------G-SEEE------------------
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCC------CeEEEEeCc---------------
Confidence 3444455789999999999999998 899888776433322 3222111 222222331
Q ss_pred CCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcc--hHHHHHhcCCCcEEEec
Q 011339 89 MLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYPW--TVDTAARFNIPRISFHG 149 (488)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~--~~~~a~~lgiP~v~~~~ 149 (488)
+. -..+..+++. ++||++|.--...| -...|+..|||.+.+..
T Consensus 82 -----D~-----------~~~~~rfl~~--~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 82 -----DF-----------PWAVRRFLDH--WRPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp -----SS-----------HHHHHHHHHH--H--SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred -----cC-----------HHHHHHHHHH--hCCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 11 2234556666 79999986655444 34467777999988643
No 207
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=65.75 E-value=64 Score=30.37 Aligned_cols=42 Identities=14% Similarity=0.024 Sum_probs=30.4
Q ss_pred hHHHHHHHHhcCCCCeEEEEcCCCc------chHHHHHhcCCCcEEEecc
Q 011339 107 QLPLENLLKELTPKPSCIVSDTCYP------WTVDTAARFNIPRISFHGF 150 (488)
Q Consensus 107 ~~~l~~~l~~~~~~pD~vv~D~~~~------~~~~~a~~lgiP~v~~~~~ 150 (488)
...|...++. ..||+||+-..+. -+..+|+.||+|++++...
T Consensus 101 A~~La~ai~~--~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 101 ASALAAAAQK--AGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHHHH--hCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 3445556666 5799999855332 4678999999999997654
No 208
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=64.95 E-value=71 Score=25.71 Aligned_cols=87 Identities=20% Similarity=0.203 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCccccCCCchhhHHHHHH
Q 011339 22 HMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFDMLHSTDLVSNFFK 101 (488)
Q Consensus 22 Hv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 101 (488)
+-.-++.+|+.|.+.|++|. +++...+.+++. ++....+.. +.+ .... +
T Consensus 11 dk~~~~~~a~~l~~~G~~i~--aT~gTa~~L~~~---------gi~~~~v~~------~~~-~~~~------~------- 59 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKLY--ATEGTADFLLEN---------GIPVTPVAW------PSE-EPQN------D------- 59 (116)
T ss_pred cchhHHHHHHHHHHCCCEEE--EccHHHHHHHHc---------CCCceEeee------ccC-CCCC------C-------
Confidence 44568899999999999873 455455555433 444433310 100 0000 0
Q ss_pred HHHHhhHHHHHHHHhcCCCCeEEEEcCC---------CcchHHHHHhcCCCcEE
Q 011339 102 SLRLLQLPLENLLKELTPKPSCIVSDTC---------YPWTVDTAARFNIPRIS 146 (488)
Q Consensus 102 ~~~~~~~~l~~~l~~~~~~pD~vv~D~~---------~~~~~~~a~~lgiP~v~ 146 (488)
...+.+++++ .++|+||.... .+.....|-.+|||+++
T Consensus 60 -----~~~i~~~i~~--~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 60 -----KPSLRELLAE--GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred -----chhHHHHHHc--CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 1456677777 79999998542 23456678889999974
No 209
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=64.61 E-value=41 Score=31.78 Aligned_cols=43 Identities=21% Similarity=0.189 Sum_probs=34.7
Q ss_pred CeEEecccchhhhhccCCcccccccCCchhHHHHhhcCCCEeecCc
Q 011339 339 GILILGWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPL 384 (488)
Q Consensus 339 nv~~~~~~pq~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~ 384 (488)
.+++.+-.+-.+++.+++. +||-.+. +-.||+.+|+|++++.-
T Consensus 184 ~~~~~~~~~~~~Ll~~s~~--VvtinSt-vGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 184 VVIIDDDVNLYELLEQSDA--VVTINST-VGLEALLHGKPVIVFGR 226 (269)
T ss_pred eEEECCCCCHHHHHHhCCE--EEEECCH-HHHHHHHcCCceEEecC
Confidence 3444566778899999999 8888664 77899999999999874
No 210
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=64.54 E-value=75 Score=30.39 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=15.7
Q ss_pred hhHHHHHHHHhcCCCCeEEEE
Q 011339 106 LQLPLENLLKELTPKPSCIVS 126 (488)
Q Consensus 106 ~~~~l~~~l~~~~~~pD~vv~ 126 (488)
....|.+++++ .+||+||.
T Consensus 109 ~~~~L~~iIr~--~~PdvVvT 127 (283)
T TIGR03446 109 AAEPLVRVIRE--FRPHVITT 127 (283)
T ss_pred HHHHHHHHHHH--cCCEEEEe
Confidence 45778888888 89999986
No 211
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=63.95 E-value=68 Score=32.75 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=28.8
Q ss_pred hHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEE
Q 011339 107 QLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISF 147 (488)
Q Consensus 107 ~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~ 147 (488)
..++.+++++ .+||+||.+.. ...+|+++|+|++.+
T Consensus 360 ~~el~~~i~~--~~pdliig~~~---~~~~a~~~~ip~i~~ 395 (428)
T cd01965 360 LWDLESLAKE--EPVDLLIGNSH---GRYLARDLGIPLVRV 395 (428)
T ss_pred HHHHHHHhhc--cCCCEEEECch---hHHHHHhcCCCEEEe
Confidence 3556677777 79999999965 567899999999875
No 212
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=63.91 E-value=12 Score=33.26 Aligned_cols=44 Identities=14% Similarity=0.081 Sum_probs=35.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHH-CCCeEEEEeCCcchhhhH
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQ-HGAAITIVTTPANAARFK 53 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~~~ 53 (488)
|+||++.-.|+.| .+=...|+++|.+ .||+|.++.++.-...+.
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~ 45 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLA 45 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHH
Confidence 4678888777777 6669999999999 599999999986555544
No 213
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=63.65 E-value=22 Score=34.03 Aligned_cols=43 Identities=9% Similarity=0.139 Sum_probs=36.6
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchh
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAA 50 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 50 (488)
+...|.++..|+-|--.-.=.|.++|.++||.|-++...+...
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp 92 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSP 92 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCC
Confidence 3456789999999999999999999999999999997765443
No 214
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=62.87 E-value=29 Score=32.01 Aligned_cols=47 Identities=9% Similarity=0.074 Sum_probs=37.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHH
Q 011339 11 HFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVA 57 (488)
Q Consensus 11 kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~ 57 (488)
-+++...++.|-..-...++.+.+++|..|.|++.+.....+.+...
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~ 73 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQME 73 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHH
Confidence 35677788999999999998888889999999999766555544433
No 215
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=62.08 E-value=57 Score=31.76 Aligned_cols=32 Identities=16% Similarity=0.110 Sum_probs=24.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
|||+|+..+..+ +...++|.++||+|..+.+.
T Consensus 1 mkIvf~Gs~~~a-----~~~L~~L~~~~~~i~~Vvt~ 32 (313)
T TIGR00460 1 LRIVFFGTPTFS-----LPVLEELREDNFEVVGVVTQ 32 (313)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCcEEEEEcC
Confidence 689998776543 66778889999998866553
No 216
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=61.99 E-value=1.1e+02 Score=30.73 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=34.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhH
Q 011339 12 FVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFK 53 (488)
Q Consensus 12 vl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 53 (488)
+++...|+.|--.=++.+|..+++.|..|.|++.+...+.++
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~ 126 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIK 126 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHH
Confidence 466667899999999999999999999999998875544443
No 217
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=61.23 E-value=53 Score=28.89 Aligned_cols=39 Identities=28% Similarity=0.356 Sum_probs=29.8
Q ss_pred hHHHHHHHHhcCCCCeEEEEcCCCc---chHHHHHhcCCCcEEE
Q 011339 107 QLPLENLLKELTPKPSCIVSDTCYP---WTVDTAARFNIPRISF 147 (488)
Q Consensus 107 ~~~l~~~l~~~~~~pD~vv~D~~~~---~~~~~a~~lgiP~v~~ 147 (488)
.+.+.+++++ .+||+|+.-.... .+..+|.++|.|+++=
T Consensus 80 a~~l~~~i~~--~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsd 121 (181)
T cd01985 80 AKALAALIKK--EKPDLILAGATSIGKQLAPRVAALLGVPQISD 121 (181)
T ss_pred HHHHHHHHHH--hCCCEEEECCcccccCHHHHHHHHhCCCccee
Confidence 4556666666 6899999877543 5788999999998874
No 218
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=60.78 E-value=16 Score=32.26 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=24.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
|||+++. +.|++- -.|+++..+|||+||-++-.
T Consensus 1 mKIaiIg--AsG~~G--s~i~~EA~~RGHeVTAivRn 33 (211)
T COG2910 1 MKIAIIG--ASGKAG--SRILKEALKRGHEVTAIVRN 33 (211)
T ss_pred CeEEEEe--cCchhH--HHHHHHHHhCCCeeEEEEeC
Confidence 6787765 344443 36789999999999998764
No 219
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=60.39 E-value=13 Score=34.41 Aligned_cols=37 Identities=16% Similarity=0.034 Sum_probs=28.7
Q ss_pred CEEEEEcCCCccCHHH------------HHHHHHHHHHCCCeEEEEeCC
Q 011339 10 PHFVLFPFLAQGHMIP------------MIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p------------~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
|||++++.|+.=.+.| -..||++|.++||+|+++..+
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEECc
Confidence 5777777777666655 367889999999999998754
No 220
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=60.22 E-value=94 Score=31.77 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=29.5
Q ss_pred hHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEE
Q 011339 107 QLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISF 147 (488)
Q Consensus 107 ~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~ 147 (488)
..++.++++. .+||++|.+.. ...+|+++|+|++.+
T Consensus 361 ~~e~~~~l~~--~~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 361 FFDIESYAKE--LKIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHHHHHh--cCCCEEEECch---hHHHHHHcCCCEEEe
Confidence 3567777888 79999999965 568999999999875
No 221
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=60.05 E-value=45 Score=27.91 Aligned_cols=48 Identities=10% Similarity=0.043 Sum_probs=39.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHH
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVV 56 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~ 56 (488)
+.+|++-+..+.+|-.----++..|.+.|++|.........+.+-+..
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa 48 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAA 48 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH
Confidence 358999999999999999999999999999999997765555544443
No 222
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=59.67 E-value=73 Score=32.05 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=35.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHH
Q 011339 11 HFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKT 54 (488)
Q Consensus 11 kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~ 54 (488)
=|++-.-|+.|--.=+++++..|+++| .|.|++.+.....++-
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qikl 137 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKL 137 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHH
Confidence 356666789999999999999999999 9999999876666543
No 223
>PRK05920 aromatic acid decarboxylase; Validated
Probab=59.45 E-value=16 Score=32.97 Aligned_cols=45 Identities=18% Similarity=0.095 Sum_probs=34.3
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhH
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFK 53 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 53 (488)
.++||++--.++.+= +=.+.+.++|.+.||+|.++.++.-...+.
T Consensus 2 ~~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~ 46 (204)
T PRK05920 2 KMKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVLA 46 (204)
T ss_pred CCCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHHH
Confidence 456777776665444 688999999999999999999986544443
No 224
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=58.95 E-value=1e+02 Score=32.12 Aligned_cols=49 Identities=4% Similarity=-0.052 Sum_probs=40.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHh
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVAR 58 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~ 58 (488)
.-+++...|+.|--.=.+.++.+.+++|..|.|++.+...+.+......
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~ 312 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYS 312 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHH
Confidence 4467778889999999999999999999999999998776666555443
No 225
>PRK10867 signal recognition particle protein; Provisional
Probab=58.78 E-value=1e+02 Score=31.60 Aligned_cols=43 Identities=9% Similarity=0.124 Sum_probs=36.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHC-CCeEEEEeCCcchhhh
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQH-GAAITIVTTPANAARF 52 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~~ 52 (488)
.-|+|+..++.|-..-...||..|+++ |+.|.+++...+....
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa 144 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAA 144 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHH
Confidence 345677778999999999999999999 9999999998665543
No 226
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=58.66 E-value=81 Score=25.24 Aligned_cols=85 Identities=13% Similarity=0.118 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCccccCCCchhhHHHHHH
Q 011339 22 HMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFDMLHSTDLVSNFFK 101 (488)
Q Consensus 22 Hv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 101 (488)
+=.-++.+|+.|.+.|+++ ++++.....+++. |+....+.. ..++
T Consensus 10 ~K~~~~~~a~~l~~~G~~i--~AT~gTa~~L~~~---------Gi~~~~v~~------~~~~------------------ 54 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPL--FATGGTSRVLADA---------GIPVRAVSK------RHED------------------ 54 (112)
T ss_pred cHHHHHHHHHHHHHCCCEE--EECcHHHHHHHHc---------CCceEEEEe------cCCC------------------
Confidence 3455889999999999987 3455555555543 565554421 1111
Q ss_pred HHHHhhHHHHHHHHhcCCCCeEEEEcC--CC--------cchHHHHHhcCCCcEE
Q 011339 102 SLRLLQLPLENLLKELTPKPSCIVSDT--CY--------PWTVDTAARFNIPRIS 146 (488)
Q Consensus 102 ~~~~~~~~l~~~l~~~~~~pD~vv~D~--~~--------~~~~~~a~~lgiP~v~ 146 (488)
-.+.+.+.+++. .++|+||.-. .. +.-..+|-..+||+++
T Consensus 55 ----g~~~i~~~i~~~-g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 55 ----GEPTVDAAIAEK-GKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred ----CCcHHHHHHhCC-CCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 012233333330 3899998743 22 1234568888999987
No 227
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=58.51 E-value=16 Score=32.09 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=40.6
Q ss_pred cCCcccccccCCchhHHHHhhcCCCEeecCccc-----------------------ccchhHHHHHHHhcceEEecccCC
Q 011339 354 HPSIGGFLTHCSWNSSLEGISAGVPLITWPLYG-----------------------DQFWNEKLIVQVLNIGVRIGVEVP 410 (488)
Q Consensus 354 ~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~-----------------------DQ~~na~rv~e~~G~G~~l~~~~~ 410 (488)
...++++|++||......... ++|+|-+|..+ ........+.+-+|+-+..-.
T Consensus 32 ~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~--- 107 (176)
T PF06506_consen 32 SEGADVIISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYP--- 107 (176)
T ss_dssp TTT-SEEEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEE---
T ss_pred hcCCeEEEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEE---
Confidence 344444999999988888877 99999999832 233334555334555443333
Q ss_pred CCCCcccccccccCHHHHHHHHHHHHcc
Q 011339 411 LDFGEEEEIGVLVKKEDVVKAINILMDE 438 (488)
Q Consensus 411 ~~~~~~~~~~~~~~~~~l~~ai~~~l~~ 438 (488)
.-+.+++...|.++..+
T Consensus 108 -----------~~~~~e~~~~i~~~~~~ 124 (176)
T PF06506_consen 108 -----------YDSEEEIEAAIKQAKAE 124 (176)
T ss_dssp -----------ESSHHHHHHHHHHHHHT
T ss_pred -----------ECCHHHHHHHHHHHHHc
Confidence 35677788888777543
No 228
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=58.34 E-value=14 Score=36.02 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=29.3
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCc
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPA 47 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (488)
.+|||+++..|+.| ..+|..|++.||+|+++.-..
T Consensus 4 ~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 35799999988888 457888999999999998764
No 229
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=57.97 E-value=8 Score=33.31 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=27.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCc
Q 011339 11 HFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPA 47 (488)
Q Consensus 11 kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (488)
||.++..|..|+ ++|..|+++||+|++.+...
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 677887777775 78999999999999998863
No 230
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=57.42 E-value=1.2e+02 Score=27.09 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=32.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchh
Q 011339 12 FVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAA 50 (488)
Q Consensus 12 vl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 50 (488)
|+|+...+-|-..-...||..++.+|..|.+++...+.-
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI 42 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence 577777899999999999999999999999999986643
No 231
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=57.16 E-value=1.4e+02 Score=26.43 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=39.0
Q ss_pred CCCEeecCccc----cc---chhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHc
Q 011339 376 GVPLITWPLYG----DQ---FWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMD 437 (488)
Q Consensus 376 GvP~v~~P~~~----DQ---~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~ 437 (488)
++|+|++|-.. .. ..|..++ ++.|+=+.-.....+.- -+.++++-.+.++|.+.|.+.+.
T Consensus 113 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L-~~~G~~vi~p~~g~la~-~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 113 TTPKLIAPAMNTKMYENPATQRNLKTL-KEDGVQEIEPKEGLLAC-GDEGYGALADIETILETIENTLK 179 (182)
T ss_pred CCCEEEEECCCHHHhcCHHHHHHHHHH-HHCCCEEECCCCCcccc-CCccCCCCCCHHHHHHHHHHHhc
Confidence 89999999632 22 4478888 58776555444322211 23345677899999999888764
No 232
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=56.94 E-value=1.1e+02 Score=31.00 Aligned_cols=50 Identities=10% Similarity=0.147 Sum_probs=41.5
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHH
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVA 57 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~ 57 (488)
++..|+++..-+.|-..-.--||+.|.++|+.|.+++...+.+..-.++.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~ 148 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLK 148 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHH
Confidence 45667888888999999999999999999999999999877665444443
No 233
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=56.89 E-value=40 Score=31.17 Aligned_cols=99 Identities=11% Similarity=0.165 Sum_probs=52.7
Q ss_pred CCeEEEEeeCCccC---CChHHHHHHHHHHhcCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEEecc--cc-h
Q 011339 275 PNSVVYVCLGSICN---LTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGW--AP-Q 348 (488)
Q Consensus 275 ~~~vV~vs~Gs~~~---~~~~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~--~p-q 348 (488)
+++.|.+..|+... .+.+.+.++++.+...+..++ .+++.. + ...+ .-+.+........+.+..- +. .
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vv-l~g~~~-~--~~~~--~~~~~~~~~~~~~~~~~~~~~l~e~ 177 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVV-LLGGPE-E--QEKE--IADQIAAGLQNPVINLAGKTSLREL 177 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEE-E--SSH-H--HHHH--HHHHHHTTHTTTTEEETTTS-HHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEE-EEccch-H--HHHH--HHHHHHHhcccceEeecCCCCHHHH
Confidence 45678888887665 678889999999987775544 444332 1 0011 0011100011112333222 22 3
Q ss_pred hhhhccCCcccccccCCchhHHHHhhcCCCEeec
Q 011339 349 VLILSHPSIGGFLTHCSWNSSLEGISAGVPLITW 382 (488)
Q Consensus 349 ~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~ 382 (488)
..+++++++ +|+. -.|.+.=|.+.|+|+|++
T Consensus 178 ~ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 178 AALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 568899998 8887 457888899999999988
No 234
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=56.41 E-value=2.1e+02 Score=28.22 Aligned_cols=60 Identities=10% Similarity=0.064 Sum_probs=45.4
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeC
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQF 73 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 73 (488)
++.+++++..|--||--+|--=|..|++.|.+|.++.--.....- +.+ ..++++++.++.
T Consensus 11 ~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e-~l~-----~hprI~ih~m~~ 70 (444)
T KOG2941|consen 11 KKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLE-ELL-----NHPRIRIHGMPN 70 (444)
T ss_pred ccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChH-HHh-----cCCceEEEeCCC
Confidence 678899999999999999999999999999999998654322211 111 135899998863
No 235
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=55.99 E-value=93 Score=27.66 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=28.9
Q ss_pred CCEEEEEcC---C-CccCHHHH-HHHHHHHHHCCCeEEEEeCCcch
Q 011339 9 QPHFVLFPF---L-AQGHMIPM-IDTARLLAQHGAAITIVTTPANA 49 (488)
Q Consensus 9 ~~kvl~~~~---~-~~GHv~p~-l~LA~~L~~rGH~Vt~~~~~~~~ 49 (488)
|-||+++.. | .+|=+=-+ -.|+..|+++||+|+++|.....
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~ 46 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYY 46 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCC
Confidence 456777763 3 36666553 45788888999999999886443
No 236
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=55.62 E-value=1.2e+02 Score=25.22 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=38.1
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhh
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARF 52 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 52 (488)
+++||++...+..+|-.----++..|...|++|.........+.+
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~ 45 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEI 45 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHH
Confidence 468999999999999999999999999999999988765444443
No 237
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=55.15 E-value=1.2e+02 Score=31.58 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEE
Q 011339 108 LPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRIS 146 (488)
Q Consensus 108 ~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~ 146 (488)
.++.+.++. .+||++|.. .....+|+++|||++.
T Consensus 383 ~e~~~~i~~--~~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 383 RELYKMLKE--AKADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred HHHHHHHhh--cCCCEEEec---CchhhhhhhcCCCEEE
Confidence 345566666 699999997 4467899999999984
No 238
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=54.40 E-value=50 Score=30.09 Aligned_cols=89 Identities=17% Similarity=0.114 Sum_probs=55.5
Q ss_pred CCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCC---------eEEEEeeCCccccCCCCCCcccc
Q 011339 18 LAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLP---------LQLIEIQFPYQEAGVPEGCENFD 88 (488)
Q Consensus 18 ~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~l~~~~~~~~ 88 (488)
-+.|--.-...++.-+...||.|++++++.... ..+.++.+.+.. +.|+++..
T Consensus 37 ~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~r---efi~qm~sl~ydv~~~~l~G~l~~~~~~~--------------- 98 (235)
T COG2874 37 NGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVR---EFIKQMESLSYDVSDFLLSGRLLFFPVNL--------------- 98 (235)
T ss_pred CCccHHHHHHHHHHHHHhCCceEEEEEechhHH---HHHHHHHhcCCCchHHHhcceeEEEEecc---------------
Confidence 477788888999999999999999999986543 344444333322 22222210
Q ss_pred CCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCc
Q 011339 89 MLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYP 131 (488)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~ 131 (488)
....+-....+...+.+.+.++. ++-|+||.|.+..
T Consensus 99 -----~~~~~~~~~~~~~L~~l~~~~k~--~~~dViIIDSls~ 134 (235)
T COG2874 99 -----EPVNWGRRSARKLLDLLLEFIKR--WEKDVIIIDSLSA 134 (235)
T ss_pred -----cccccChHHHHHHHHHHHhhHHh--hcCCEEEEecccH
Confidence 00111222234445566666666 8999999998865
No 239
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=53.74 E-value=22 Score=32.55 Aligned_cols=34 Identities=24% Similarity=0.214 Sum_probs=25.7
Q ss_pred CCEEEEEcCCCccC--HHHHHHHHHHHHHC---CCeEEE
Q 011339 9 QPHFVLFPFLAQGH--MIPMIDTARLLAQH---GAAITI 42 (488)
Q Consensus 9 ~~kvl~~~~~~~GH--v~p~l~LA~~L~~r---GH~Vt~ 42 (488)
||||+++.|.-+|. +||...++++|... |++|..
T Consensus 1 m~~ILvTGF~PFgg~~~NPS~~~v~~L~~~~~~~~~v~~ 39 (222)
T PRK13195 1 MSKVLVTGFGPYGVTPVNPAQLTAEELDGRTIAGATVIS 39 (222)
T ss_pred CCEEEEeeecCCCCCCcCchHHHHHhccccccCCeEEEE
Confidence 68899999865554 99999999999753 445444
No 240
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=53.45 E-value=88 Score=31.41 Aligned_cols=96 Identities=15% Similarity=0.152 Sum_probs=58.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCC-CeEEEEeCC-cchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCcc
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHG-AAITIVTTP-ANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCEN 86 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rG-H~Vt~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~ 86 (488)
|+||+++..|.-|+ .+|+-|+++| ++|++++-. ...+.+... .+.+++...+..
T Consensus 1 m~~ilviGaG~Vg~-----~va~~la~~~d~~V~iAdRs~~~~~~i~~~------~~~~v~~~~vD~------------- 56 (389)
T COG1748 1 MMKILVIGAGGVGS-----VVAHKLAQNGDGEVTIADRSKEKCARIAEL------IGGKVEALQVDA------------- 56 (389)
T ss_pred CCcEEEECCchhHH-----HHHHHHHhCCCceEEEEeCCHHHHHHHHhh------ccccceeEEecc-------------
Confidence 67899988866664 5799999999 999999765 222222221 112344443320
Q ss_pred ccCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCc---chHHHHHhcCCCcEEEecc
Q 011339 87 FDMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYP---WTVDTAARFNIPRISFHGF 150 (488)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~---~~~~~a~~lgiP~v~~~~~ 150 (488)
.-.+.+.++|++ +|+||.=.-.+ ....+|-+.|++++-++..
T Consensus 57 ------------------~d~~al~~li~~----~d~VIn~~p~~~~~~i~ka~i~~gv~yvDts~~ 101 (389)
T COG1748 57 ------------------ADVDALVALIKD----FDLVINAAPPFVDLTILKACIKTGVDYVDTSYY 101 (389)
T ss_pred ------------------cChHHHHHHHhc----CCEEEEeCCchhhHHHHHHHHHhCCCEEEcccC
Confidence 014556677766 27777544222 4555778888888876433
No 241
>PRK09620 hypothetical protein; Provisional
Probab=52.12 E-value=26 Score=32.38 Aligned_cols=39 Identities=10% Similarity=-0.095 Sum_probs=30.2
Q ss_pred CCCEEEEEcCCCccCHHH------------HHHHHHHHHHCCCeEEEEeCC
Q 011339 8 QQPHFVLFPFLAQGHMIP------------MIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p------------~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
+.+||++++.|+.=.+.| =..||++|.++|++|+++..+
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 456788887776655444 367899999999999999765
No 242
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=51.83 E-value=1.2e+02 Score=31.76 Aligned_cols=36 Identities=11% Similarity=0.108 Sum_probs=28.9
Q ss_pred hHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEE
Q 011339 107 QLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISF 147 (488)
Q Consensus 107 ~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~ 147 (488)
..+++.++++ .+||++|.+.. +..+|+.+|+|++.+
T Consensus 426 l~~l~~~l~~--~~~DlliG~s~---~k~~a~~~giPlir~ 461 (515)
T TIGR01286 426 LWHLRSLVFT--EPVDFLIGNSY---GKYIQRDTLVPLIRI 461 (515)
T ss_pred HHHHHHHHhh--cCCCEEEECch---HHHHHHHcCCCEEEe
Confidence 3456677777 79999998854 678899999999885
No 243
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=51.67 E-value=23 Score=35.26 Aligned_cols=111 Identities=14% Similarity=0.217 Sum_probs=62.6
Q ss_pred CCCeEEe-cccchhhhhccCCcccccccCCchhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCCCCCCc
Q 011339 337 GRGILIL-GWAPQVLILSHPSIGGFLTHCSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPLDFGE 415 (488)
Q Consensus 337 ~~nv~~~-~~~pq~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~ 415 (488)
..+++.. +..+-.++|..+++ +||=-. +.+.|.+..+.|+|....-.|.+.. ..|+ ..+.++... |.
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDyS-Si~fD~~~l~KPiify~~D~~~Y~~------~rg~--~~~~~~~~p-g~ 318 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDYS-SIIFDFLLLNKPIIFYQPDLEEYEK------ERGF--YFDYEEDLP-GP 318 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTT------TSSB--SS-TTTSSS-S-
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEech-hHHHHHHHhCCCEEEEeccHHHHhh------ccCC--CCchHhhCC-Cc
Confidence 4566654 34567889999999 999874 4788999999999987765555422 2222 222211000 00
Q ss_pred ccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCCchHH
Q 011339 416 EEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETRSSSL 468 (488)
Q Consensus 416 ~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~ 468 (488)
.--+.++|.++|..++++++ .++++.+++.+.+-. -.+|.++.+
T Consensus 319 -----~~~~~~eL~~~i~~~~~~~~---~~~~~~~~~~~~~~~-~~Dg~s~er 362 (369)
T PF04464_consen 319 -----IVYNFEELIEAIENIIENPD---EYKEKREKFRDKFFK-YNDGNSSER 362 (369)
T ss_dssp -----EESSHHHHHHHHTTHHHHHH---HTHHHHHHHHHHHST-T--S-HHHH
T ss_pred -----eeCCHHHHHHHHHhhhhCCH---HHHHHHHHHHHHhCC-CCCchHHHH
Confidence 13578999999999987652 456666666776654 245654433
No 244
>PRK11823 DNA repair protein RadA; Provisional
Probab=51.57 E-value=1.6e+02 Score=30.26 Aligned_cols=43 Identities=19% Similarity=0.188 Sum_probs=35.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHH
Q 011339 12 FVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKT 54 (488)
Q Consensus 12 vl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~ 54 (488)
+++...|+.|--.=++.++..++++|+.|.|++.+...+.+..
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ 125 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKL 125 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHH
Confidence 4667778999999999999999999999999998866555543
No 245
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=51.49 E-value=1.9e+02 Score=26.25 Aligned_cols=100 Identities=17% Similarity=0.126 Sum_probs=58.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCccccCC
Q 011339 11 HFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFDML 90 (488)
Q Consensus 11 kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~ 90 (488)
-+++...|+.|-..-.+.++..-+++|+.|.|++.+...+.+.+..... ++.+... +........ .
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~-----~~~~~~~--------~~~~l~~~~-~ 83 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSK-----GWDLEDY--------IDKSLYIVR-L 83 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHc-----CCChHHH--------HhCCeEEEe-c
Confidence 3566667788988888888888888899999999987666655544332 2211100 000000000 0
Q ss_pred CchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCC
Q 011339 91 HSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCY 130 (488)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~ 130 (488)
.. ..+......+...+..++++ .+++.||.|.+.
T Consensus 84 ~~----~~~~~~~~~l~~~~~~~i~~--~~~~~vVIDsls 117 (224)
T TIGR03880 84 DP----SDFKTSLNRIKNELPILIKE--LGASRVVIDPIS 117 (224)
T ss_pred CH----HHHHhhHHHHHHHHHHHHHH--hCCCEEEEcChH
Confidence 00 11112233455566777777 689999999654
No 246
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=51.26 E-value=2.2e+02 Score=29.45 Aligned_cols=151 Identities=11% Similarity=0.093 Sum_probs=85.6
Q ss_pred CCeEEEEeeCCccCCChHHHHHHHHHHhcCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEEecc-------cc
Q 011339 275 PNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGW-------AP 347 (488)
Q Consensus 275 ~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~-------~p 347 (488)
.+.+++.-.||+... ....+++.+.+.+..|-....... .+|.-|..+ .......++..-| +.
T Consensus 70 ~k~IllgVtGsIAay---ka~~lvr~L~k~G~~V~VvmT~sA------~~fv~p~~~-~~ls~~~V~~d~~~~~~~~~~~ 139 (475)
T PRK13982 70 SKRVTLIIGGGIAAY---KALDLIRRLKERGAHVRCVLTKAA------QQFVTPLTA-SALSGQRVYTDLFDPESEFDAG 139 (475)
T ss_pred CCEEEEEEccHHHHH---HHHHHHHHHHhCcCEEEEEECcCH------HHHhhHHHH-HHhcCCceEecCCCcccccCcc
Confidence 344666666766652 233456666666776544444332 111112222 1222233443222 23
Q ss_pred hhhhhccCCcccccccCCchhHH-------------HHhhcCCCEeecCccccc----c---hhHHHHHHHhcceEEecc
Q 011339 348 QVLILSHPSIGGFLTHCSWNSSL-------------EGISAGVPLITWPLYGDQ----F---WNEKLIVQVLNIGVRIGV 407 (488)
Q Consensus 348 q~~ll~~~~~~~~IthgG~gs~~-------------eal~~GvP~v~~P~~~DQ----~---~na~rv~e~~G~G~~l~~ 407 (488)
+.++...+++ ++|-=+-.||+. -++..+.|++++|-.... + .|..++ ++.|+-+.-..
T Consensus 140 Hi~la~~aD~-~vVAPATANTIAKiA~GiADnLlt~v~La~~~PvliaPaMN~~M~~npat~~Nl~~L-~~~G~~vi~P~ 217 (475)
T PRK13982 140 HIRLARDCDL-IVVAPATADLMAKMANGLADDLASAILLAANRPILLAPAMNPLMWNNPATRRNVAQL-KRDGVHMIGPN 217 (475)
T ss_pred chhhhhhcCE-EEEeeCCHHHHHHHHccccCcHHHHHHHhcCCCEEEEEcCCHHHhcCHHHHHHHHHH-HHCCCEEECCC
Confidence 5556556665 466666666544 236789999999965433 3 588888 58887655333
Q ss_pred cCCCCCCcccccccccCHHHHHHHHHHHHc
Q 011339 408 EVPLDFGEEEEIGVLVKKEDVVKAINILMD 437 (488)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~ 437 (488)
...+--.-+.++++-.++++|..++.+++.
T Consensus 218 ~g~lA~~g~~G~Grm~e~~~I~~~v~~~~~ 247 (475)
T PRK13982 218 AGEMAERGEAGVGRMAEPLEIAAAAEALLR 247 (475)
T ss_pred CCccccCCCcCCCCCCCHHHHHHHHHHHHh
Confidence 221211224567788999999999988874
No 247
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=50.50 E-value=17 Score=31.47 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=24.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTT 45 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~ 45 (488)
|+||.|+-.+..| ..+|+.|.++||+|+++-.
T Consensus 1 m~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d~ 32 (163)
T PF03446_consen 1 MMKIGFIGLGNMG-----SAMARNLAKAGYEVTVYDR 32 (163)
T ss_dssp -BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEES
T ss_pred CCEEEEEchHHHH-----HHHHHHHHhcCCeEEeecc
Confidence 6889999888666 5789999999999998753
No 248
>PRK00784 cobyric acid synthase; Provisional
Probab=50.41 E-value=1.3e+02 Score=31.29 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=27.7
Q ss_pred EEEEcC-CCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 011339 12 FVLFPF-LAQGHMIPMIDTARLLAQHGAAITIVTT 45 (488)
Q Consensus 12 vl~~~~-~~~GHv~p~l~LA~~L~~rGH~Vt~~~~ 45 (488)
+++... ..-|-..-+..|++.|+++|++|..+=+
T Consensus 5 ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 5 LMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 555544 4689999999999999999999987744
No 249
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=50.39 E-value=63 Score=26.04 Aligned_cols=45 Identities=11% Similarity=-0.048 Sum_probs=35.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHH
Q 011339 12 FVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVV 56 (488)
Q Consensus 12 vl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~ 56 (488)
++..+.++..|-....-++..|.++|++|.++......+.+.+.+
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i 46 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAA 46 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHH
Confidence 577788899999999999999999999999997654444444433
No 250
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=50.19 E-value=22 Score=34.90 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=27.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
||||+|+..|..| ..+|..|+++||+|+++...
T Consensus 2 ~mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 2 MARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecH
Confidence 5789999888777 45789999999999999764
No 251
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=50.09 E-value=1.8e+02 Score=29.49 Aligned_cols=35 Identities=29% Similarity=0.310 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEE
Q 011339 108 LPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISF 147 (488)
Q Consensus 108 ~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~ 147 (488)
.++.+.++. .+||++|.... ...+|+++|+|++..
T Consensus 346 ~e~~~~i~~--~~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 346 RELKKLLKE--KKADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHHhh--cCCCEEEECCc---chhhHHhcCCCEEEc
Confidence 456677777 79999999844 457899999999854
No 252
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=49.95 E-value=30 Score=31.54 Aligned_cols=28 Identities=21% Similarity=0.263 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCccC--HHHHHHHHHHHHHC
Q 011339 9 QPHFVLFPFLAQGH--MIPMIDTARLLAQH 36 (488)
Q Consensus 9 ~~kvl~~~~~~~GH--v~p~l~LA~~L~~r 36 (488)
||+|+++.|.-+|. +||...++++|...
T Consensus 1 m~~ILvTGF~PF~~~~~NPS~~~~~~L~~~ 30 (211)
T PRK13196 1 MPTLLLTGFEPFHTHPVNPSAQAAQALNGE 30 (211)
T ss_pred CCEEEEEeecCCCCCCCCcHHHHHHhcccc
Confidence 68899998865554 99999999999764
No 253
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=49.78 E-value=28 Score=33.44 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=26.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
|||+++..++.| ..+|..|++.||+|++++.+
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~ 32 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRP 32 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEecH
Confidence 689999888776 46788999999999999773
No 254
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=49.59 E-value=1.9e+02 Score=25.76 Aligned_cols=87 Identities=8% Similarity=0.020 Sum_probs=45.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCC--eEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCccc
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGA--AITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENF 87 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH--~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~ 87 (488)
+||+++..+..+- +.++.+.+.+.++ +|.++.+........+...+ .++.+..+.. ....
T Consensus 1 ~riail~sg~gs~---~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~-----~gip~~~~~~--------~~~~-- 62 (190)
T TIGR00639 1 KRIVVLISGNGSN---LQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQ-----AGIPTFVLSL--------KDFP-- 62 (190)
T ss_pred CeEEEEEcCCChh---HHHHHHHHHcCCCCceEEEEEECCccchHHHHHHH-----cCCCEEEECc--------cccC--
Confidence 5788887755443 4466677777665 66665443211111122122 2565554321 1100
Q ss_pred cCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCC
Q 011339 88 DMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCY 130 (488)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~ 130 (488)
. .......+.+++++ .++|++|+-.+.
T Consensus 63 ----~----------~~~~~~~~~~~l~~--~~~D~iv~~~~~ 89 (190)
T TIGR00639 63 ----S----------REAFDQAIIEELRA--HEVDLVVLAGFM 89 (190)
T ss_pred ----c----------hhhhhHHHHHHHHh--cCCCEEEEeCcc
Confidence 0 01123456677777 799999987653
No 255
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=49.58 E-value=1.4e+02 Score=24.24 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=16.1
Q ss_pred HHhhHHHHHHHHhcCCCCeEEEEcC
Q 011339 104 RLLQLPLENLLKELTPKPSCIVSDT 128 (488)
Q Consensus 104 ~~~~~~l~~~l~~~~~~pD~vv~D~ 128 (488)
......+.+++++ .+||+|++-.
T Consensus 86 ~~~~~~l~~~i~~--~~p~~V~t~~ 108 (128)
T PF02585_consen 86 EELVRDLEDLIRE--FRPDVVFTPD 108 (128)
T ss_dssp HHHHHHHHHHHHH--H-ESEEEEE-
T ss_pred HHHHHHHHHHHHH--cCCCEEEECC
Confidence 3456778888888 7999988653
No 256
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=48.82 E-value=41 Score=32.32 Aligned_cols=34 Identities=32% Similarity=0.297 Sum_probs=29.2
Q ss_pred HHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhh
Q 011339 26 MIDTARLLAQHGAAITIVTTPANAARFKTVVARA 59 (488)
Q Consensus 26 ~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~ 59 (488)
.+.||+.|.+.|.+|+++|.+...+.+++.....
T Consensus 65 A~aLa~aL~~lG~~~~ivtd~~~~~~~~~~~~~~ 98 (291)
T PF14336_consen 65 AAALARALQALGKEVVIVTDERCAPVVKAAVRAA 98 (291)
T ss_pred HHHHHHHHHHcCCeEEEEECHHHHHHHHHHHHHH
Confidence 7899999999999999999998888777765443
No 257
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=48.75 E-value=1.3e+02 Score=30.47 Aligned_cols=31 Identities=16% Similarity=0.407 Sum_probs=23.8
Q ss_pred HHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEE
Q 011339 112 NLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISF 147 (488)
Q Consensus 112 ~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~ 147 (488)
+.+++ .+||+||.... ...+|+++|||++.+
T Consensus 352 ~~~~~--~~pdliig~s~---~~~~a~~lgip~~~~ 382 (415)
T cd01977 352 EILEM--LKPDIILTGPR---VGELVKKLHVPYVNI 382 (415)
T ss_pred HHHHh--cCCCEEEecCc---cchhhhhcCCCEEec
Confidence 34455 69999998855 346899999999885
No 258
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=48.64 E-value=24 Score=31.46 Aligned_cols=37 Identities=11% Similarity=0.085 Sum_probs=31.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCc
Q 011339 11 HFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPA 47 (488)
Q Consensus 11 kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (488)
||++--.|+.|=+.-.+.+.++|.+.|++|+++.++.
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~ 38 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSET 38 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchh
Confidence 5777777777777777799999999999999998874
No 259
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=48.60 E-value=31 Score=31.21 Aligned_cols=34 Identities=18% Similarity=0.088 Sum_probs=26.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCc
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPA 47 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (488)
||++++...+-.| ..||++|++.||+|++.+...
T Consensus 1 m~~~~i~GtGniG-----~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 1 MMIIAIIGTGNIG-----SALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred CcEEEEeccChHH-----HHHHHHHHhCCCeEEEecCCC
Confidence 5677777666555 578999999999999997653
No 260
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=48.51 E-value=1.8e+02 Score=25.27 Aligned_cols=87 Identities=13% Similarity=0.087 Sum_probs=46.3
Q ss_pred ceEEEcCchhhhHHHHHHHHhhcCCceEEeCCCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCC
Q 011339 210 YGIIINTFEELELEYVKECKKTKGGKVWCLGPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNL 289 (488)
Q Consensus 210 ~~~l~~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~ 289 (488)
...++.+-++.-......+.+.+ |++..+|-....-. ....+++.+.+....+. +|+|++|+--+
T Consensus 50 ~ifllG~~~~~~~~~~~~l~~~y-P~l~ivg~~~g~f~------------~~~~~~i~~~I~~~~pd-iv~vglG~PkQ- 114 (172)
T PF03808_consen 50 RIFLLGGSEEVLEKAAANLRRRY-PGLRIVGYHHGYFD------------EEEEEAIINRINASGPD-IVFVGLGAPKQ- 114 (172)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHC-CCeEEEEecCCCCC------------hhhHHHHHHHHHHcCCC-EEEEECCCCHH-
Confidence 44556665555445555666666 67777774322111 01356777777765443 99999985332
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEEeCC
Q 011339 290 TSSQMIELGLGLEASKKPFIWVIRGG 315 (488)
Q Consensus 290 ~~~~~~~~~~a~~~~~~~~v~~~~~~ 315 (488)
| .-+.+-....+..++..++..
T Consensus 115 --E--~~~~~~~~~l~~~v~i~vG~~ 136 (172)
T PF03808_consen 115 --E--RWIARHRQRLPAGVIIGVGGA 136 (172)
T ss_pred --H--HHHHHHHHHCCCCEEEEECch
Confidence 2 222233334566644444443
No 261
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=48.45 E-value=1.6e+02 Score=29.76 Aligned_cols=41 Identities=12% Similarity=0.111 Sum_probs=36.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcch
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANA 49 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~ 49 (488)
.-+|+|+..++-|-..-...||..|..+|+.|.+++...+.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 35788888899999999999999999999999999987554
No 262
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=48.34 E-value=25 Score=33.83 Aligned_cols=31 Identities=26% Similarity=0.184 Sum_probs=26.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTT 45 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~ 45 (488)
|||+++..|..| ..+|..|++.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 578888887776 5678889999999999986
No 263
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=47.79 E-value=1.9e+02 Score=26.60 Aligned_cols=48 Identities=15% Similarity=-0.040 Sum_probs=37.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHH
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVA 57 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~ 57 (488)
--+++...|+.|-..-.+.++.+-+++|..|.|++.+...+.+.+...
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~ 69 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMA 69 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHH
Confidence 345777788999999888888877788999999999876665554433
No 264
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.78 E-value=86 Score=31.29 Aligned_cols=46 Identities=11% Similarity=0.098 Sum_probs=37.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHH
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTV 55 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (488)
.=|.|+..-+.|-..-+-.+|..+.++|+.+.++|...+..-.-.+
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQ 147 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQ 147 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHH
Confidence 4457777789999999999999999999999999998665543333
No 265
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=47.76 E-value=1.3e+02 Score=30.88 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEE
Q 011339 108 LPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISF 147 (488)
Q Consensus 108 ~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~ 147 (488)
.++.+++++ .++|++|.... ...+|+++|||++.+
T Consensus 363 ~~l~~~i~~--~~~dliig~s~---~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 363 EDLEDLACA--AGADLLITNSH---GRALAQRLALPLVRA 397 (432)
T ss_pred HHHHHHHhh--cCCCEEEECcc---hHHHHHHcCCCEEEe
Confidence 355677777 79999998854 577999999999875
No 266
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=47.69 E-value=21 Score=33.69 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=36.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHC-CCeEEEEeCCcchhhhHHH
Q 011339 11 HFVLFPFLAQGHMIPMIDTARLLAQH-GAAITIVTTPANAARFKTV 55 (488)
Q Consensus 11 kvl~~~~~~~GHv~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~~~~~ 55 (488)
-+++...++.|-..-.+.++..++.. |+.|.|++.+.....+...
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r 77 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARR 77 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHH
Confidence 35667778999999999999999887 9999999997655554433
No 267
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=47.66 E-value=25 Score=31.78 Aligned_cols=38 Identities=16% Similarity=0.132 Sum_probs=32.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
|+=|++..+|+.|-.-..-.||++|.+++|+|.-.+..
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 45577888899999999999999999999998766553
No 268
>PLN02470 acetolactate synthase
Probab=47.60 E-value=53 Score=35.11 Aligned_cols=92 Identities=14% Similarity=0.102 Sum_probs=52.4
Q ss_pred eeCCccCCCh--HHHHHHHHHHhcCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEEeccc-chhhh-------
Q 011339 282 CLGSICNLTS--SQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWA-PQVLI------- 351 (488)
Q Consensus 282 s~Gs~~~~~~--~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~-pq~~l------- 351 (488)
+|||...... .....+++.|++.+.+.|+-+.+.. . ++ -++......++..+.-. .+.+.
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~-~--------~~-l~dal~~~~~i~~i~~rhE~~A~~~Adgya 71 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGA-S--------ME-IHQALTRSNCIRNVLCRHEQGEVFAAEGYA 71 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcc-c--------HH-HHHHHhccCCceEEEeccHHHHHHHHHHHH
Confidence 4566555332 2255678888889999999887775 1 11 11111112233322110 11111
Q ss_pred hccCCcccccccCCch------hHHHHhhcCCCEeecC
Q 011339 352 LSHPSIGGFLTHCSWN------SSLEGISAGVPLITWP 383 (488)
Q Consensus 352 l~~~~~~~~IthgG~g------s~~eal~~GvP~v~~P 383 (488)
..+-...++++|.|-| .+.+|...++|+|++.
T Consensus 72 r~tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 72 KASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred HHhCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 1222344488888855 7789999999999995
No 269
>PRK05595 replicative DNA helicase; Provisional
Probab=47.53 E-value=1.4e+02 Score=30.55 Aligned_cols=43 Identities=12% Similarity=0.202 Sum_probs=34.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-HCCCeEEEEeCCcchhhhHH
Q 011339 12 FVLFPFLAQGHMIPMIDTARLLA-QHGAAITIVTTPANAARFKT 54 (488)
Q Consensus 12 vl~~~~~~~GHv~p~l~LA~~L~-~rGH~Vt~~~~~~~~~~~~~ 54 (488)
+++...|+.|-..-.+.+|..++ +.|+.|.|++.+.....+..
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~ 247 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAY 247 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHH
Confidence 45677889999999999999876 56999999999866555433
No 270
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=47.47 E-value=41 Score=30.93 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 22 HMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 22 Hv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
|..-|...|++|.++||+|.++...
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5667899999999999999999887
No 271
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=47.44 E-value=2.8e+02 Score=26.97 Aligned_cols=81 Identities=15% Similarity=0.098 Sum_probs=57.6
Q ss_pred CCeEE-ecccc---hhhhhccCCccccccc--CCchhHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCCC
Q 011339 338 RGILI-LGWAP---QVLILSHPSIGGFLTH--CSWNSSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPL 411 (488)
Q Consensus 338 ~nv~~-~~~~p---q~~ll~~~~~~~~Ith--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~ 411 (488)
.++.+ .+++| +..+|+.|++..|+++ =|.||++-.++.|+|+++--- =+.+.. +. +.|+-+-.+.+
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~---n~fwqd-l~-e~gv~Vlf~~d--- 277 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRD---NPFWQD-LT-EQGLPVLFTGD--- 277 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEecC---CchHHH-HH-hCCCeEEecCC---
Confidence 56664 56665 6779999999888886 488999999999999987532 223333 42 66777655655
Q ss_pred CCCcccccccccCHHHHHHHHHHHH
Q 011339 412 DFGEEEEIGVLVKKEDVVKAINILM 436 (488)
Q Consensus 412 ~~~~~~~~~~~~~~~~l~~ai~~~l 436 (488)
.++...+.++=+++.
T Consensus 278 ----------~L~~~~v~e~~rql~ 292 (322)
T PRK02797 278 ----------DLDEDIVREAQRQLA 292 (322)
T ss_pred ----------cccHHHHHHHHHHHH
Confidence 588888877755543
No 272
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=47.15 E-value=29 Score=35.80 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=34.9
Q ss_pred CCCEEEEEcCCCccCHHHH------------HHHHHHHHHCCCeEEEEeCCc
Q 011339 8 QQPHFVLFPFLAQGHMIPM------------IDTARLLAQHGAAITIVTTPA 47 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~------------l~LA~~L~~rGH~Vt~~~~~~ 47 (488)
+..||+++..|+.=.+.|. ..||+++..+|++||+++.+.
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 5679999999998888774 689999999999999999873
No 273
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=47.12 E-value=2.5e+02 Score=28.91 Aligned_cols=36 Identities=25% Similarity=0.217 Sum_probs=27.8
Q ss_pred hHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEE
Q 011339 107 QLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISF 147 (488)
Q Consensus 107 ~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~ 147 (488)
..++.+.++. .+||++|... ....+|+++|||++.+
T Consensus 384 ~~e~~~~i~~--~~pDl~ig~~---~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 384 PRELLKLLLE--YKADLLIAGG---KERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHHHHhh--cCCCEEEEcc---chHHHHHhcCCCEEEc
Confidence 3556777777 7999999863 3567888999999874
No 274
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=47.07 E-value=1.1e+02 Score=28.84 Aligned_cols=26 Identities=4% Similarity=0.027 Sum_probs=18.6
Q ss_pred HHHHHHHHHHC---CCeEEEEeCCcchhh
Q 011339 26 MIDTARLLAQH---GAAITIVTTPANAAR 51 (488)
Q Consensus 26 ~l~LA~~L~~r---GH~Vt~~~~~~~~~~ 51 (488)
+.+|+++|.+. |++|+++++....+-
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~eqSg 44 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAFEQSG 44 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCCC
Confidence 66777877763 479999999755443
No 275
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=46.74 E-value=62 Score=28.05 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=20.9
Q ss_pred ccccCCch------hHHHHhhcCCCEeecCc
Q 011339 360 FLTHCSWN------SSLEGISAGVPLITWPL 384 (488)
Q Consensus 360 ~IthgG~g------s~~eal~~GvP~v~~P~ 384 (488)
+++|+|-| .+.+|...++|+|++.-
T Consensus 64 ~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 64 VVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred EEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 88888855 67799999999999954
No 276
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=46.67 E-value=2.3e+02 Score=28.97 Aligned_cols=41 Identities=12% Similarity=0.110 Sum_probs=35.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchh
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAA 50 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 50 (488)
--|+|+..++-|-..-...||..|.++|+.|.+++...+..
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 34577777899999999999999999999999999886654
No 277
>PRK06321 replicative DNA helicase; Provisional
Probab=46.47 E-value=2.1e+02 Score=29.70 Aligned_cols=42 Identities=12% Similarity=0.126 Sum_probs=34.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHH-CCCeEEEEeCCcchhhhH
Q 011339 12 FVLFPFLAQGHMIPMIDTARLLAQ-HGAAITIVTTPANAARFK 53 (488)
Q Consensus 12 vl~~~~~~~GHv~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~~~ 53 (488)
+++...|+.|-..-.+.+|...+. .|..|.|++.+.....+.
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~ 271 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLI 271 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence 466778999999999999999874 599999999886655543
No 278
>PRK08760 replicative DNA helicase; Provisional
Probab=46.38 E-value=52 Score=34.14 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=34.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHH-CCCeEEEEeCCcchhhhH
Q 011339 12 FVLFPFLAQGHMIPMIDTARLLAQ-HGAAITIVTTPANAARFK 53 (488)
Q Consensus 12 vl~~~~~~~GHv~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~~~ 53 (488)
+++...|+.|-..-.+.+|...+. .|+.|.|++.+.....+.
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~ 274 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLA 274 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHH
Confidence 466778999999999999998875 499999999886665443
No 279
>PRK07206 hypothetical protein; Provisional
Probab=46.22 E-value=66 Score=32.55 Aligned_cols=32 Identities=16% Similarity=0.079 Sum_probs=23.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
.||+++-.... ...++++++++|+++.+++..
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~ 34 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSS 34 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcC
Confidence 35666665333 346899999999999888765
No 280
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=46.04 E-value=30 Score=33.54 Aligned_cols=41 Identities=20% Similarity=0.164 Sum_probs=32.8
Q ss_pred CEEEEEcC-CCccCHHHHHHHHHHHHHCCCeEEEEeCCcchh
Q 011339 10 PHFVLFPF-LAQGHMIPMIDTARLLAQHGAAITIVTTPANAA 50 (488)
Q Consensus 10 ~kvl~~~~-~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 50 (488)
||++|+.. |+-|-..-..++|-.++++|++|.++++.+..+
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 46766665 799999999999999999999999999876544
No 281
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=46.01 E-value=1.2e+02 Score=31.06 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=35.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHH-CCCeEEEEeCCcchhhhHH
Q 011339 12 FVLFPFLAQGHMIPMIDTARLLAQ-HGAAITIVTTPANAARFKT 54 (488)
Q Consensus 12 vl~~~~~~~GHv~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~~~~ 54 (488)
+++...|+.|-..-.+.+|..++. .|+.|.|++.+.....+..
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~ 241 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAM 241 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHH
Confidence 466777899999999999999886 5999999999876665543
No 282
>PRK04328 hypothetical protein; Provisional
Probab=45.80 E-value=2e+02 Score=26.86 Aligned_cols=47 Identities=13% Similarity=-0.054 Sum_probs=36.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHH
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVV 56 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~ 56 (488)
.-+++...|+.|-..-.+.++.+-+++|+.+.|++.+...+.+.+..
T Consensus 24 s~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~~ 70 (249)
T PRK04328 24 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNM 70 (249)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHH
Confidence 34567777899998888888877778899999999976666555443
No 283
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=45.72 E-value=38 Score=30.46 Aligned_cols=38 Identities=24% Similarity=0.389 Sum_probs=30.4
Q ss_pred CCEEEEEcCCCccCHHHHHHH-HHHHHH-CCCeEEEEeCC
Q 011339 9 QPHFVLFPFLAQGHMIPMIDT-ARLLAQ-HGAAITIVTTP 46 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~L-A~~L~~-rGH~Vt~~~~~ 46 (488)
||||+++-...+||..-+... ++.+.+ .|++|.++..+
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 568999998889999997774 566666 89999888654
No 284
>PRK09165 replicative DNA helicase; Provisional
Probab=45.43 E-value=2.2e+02 Score=29.83 Aligned_cols=43 Identities=16% Similarity=0.148 Sum_probs=34.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHC---------------CCeEEEEeCCcchhhhHH
Q 011339 12 FVLFPFLAQGHMIPMIDTARLLAQH---------------GAAITIVTTPANAARFKT 54 (488)
Q Consensus 12 vl~~~~~~~GHv~p~l~LA~~L~~r---------------GH~Vt~~~~~~~~~~~~~ 54 (488)
+++...|+.|-..-.+.+|...+.+ |..|.|++.+...+.+..
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~ 277 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLAT 277 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHH
Confidence 4667788999999999999888754 789999999877665544
No 285
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=45.37 E-value=3.1e+02 Score=27.04 Aligned_cols=126 Identities=12% Similarity=0.123 Sum_probs=70.2
Q ss_pred CccCHHHHHHHHHHHHHC--CCeEEEEeCCcchh---hhHHHHHhh--hcCCCCeEEEEeeCCccccCCCCCCccccCCC
Q 011339 19 AQGHMIPMIDTARLLAQH--GAAITIVTTPANAA---RFKTVVARA--MQSGLPLQLIEIQFPYQEAGVPEGCENFDMLH 91 (488)
Q Consensus 19 ~~GHv~p~l~LA~~L~~r--GH~Vt~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~ 91 (488)
+.|-=.-+..-.+.+++. .|...++++..+.. .+.+.-... ..+..++.|+.+..- ..-...++
T Consensus 56 GGGGErVLW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k~k~~F~idlDs~nI~Fi~Lk~R--------~lVea~~~- 126 (465)
T KOG1387|consen 56 GGGGERVLWKAVRITQRKFPNNVIVIYSGDFNVTPENILNKVKNKFDIDLDSDNIFFIYLKLR--------YLVEASTW- 126 (465)
T ss_pred CCCcceehhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHHHHHhcCceecccceEEEEEEee--------eeeecccc-
Confidence 444444455556666665 56666666653322 122111111 123346777766421 11111111
Q ss_pred chhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCc-chHHHHHhcCCCcEEEecchHHHHHHH
Q 011339 92 STDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYP-WTVDTAARFNIPRISFHGFSCFCLLCL 158 (488)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~-~~~~~a~~lgiP~v~~~~~~~~~~~~~ 158 (488)
..+..+..+.-.+.-.++.+++- .||+.|-..-++ .-+.+.+..++|++.+...|....-+.
T Consensus 127 --~hfTllgQaigsmIl~~Eai~r~---~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~DML 189 (465)
T KOG1387|consen 127 --KHFTLLGQAIGSMILAFEAIIRF---PPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTISTDML 189 (465)
T ss_pred --cceehHHHHHHHHHHHHHHHHhC---CchheEecCCCcchhHHHHHHccCceEEEEecccccHHHH
Confidence 22345556667778888888876 899988665343 455677788999999877766655443
No 286
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=45.20 E-value=1.3e+02 Score=31.40 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=25.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeCC
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQH--GAAITIVTTP 46 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~r--GH~Vt~~~~~ 46 (488)
||||++..++..| +|+++|++. |++|..+-..
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g~ 34 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSSY 34 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEECC
Confidence 7899999888887 578888876 8998877443
No 287
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=45.16 E-value=1e+02 Score=27.77 Aligned_cols=150 Identities=9% Similarity=0.011 Sum_probs=74.4
Q ss_pred CCeEEEEeeCCccCCChHHHHHHHHHHhcCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEEecccchhhhhcc
Q 011339 275 PNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSH 354 (488)
Q Consensus 275 ~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~ 354 (488)
.+.++.|..|.++. ..+..+...+..+.+. .... .+.+.......++.......+..-+..
T Consensus 10 ~k~vLVIGgG~va~-------~ka~~Ll~~ga~V~VI-s~~~-----------~~~l~~l~~~~~i~~~~~~~~~~~l~~ 70 (202)
T PRK06718 10 NKRVVIVGGGKVAG-------RRAITLLKYGAHIVVI-SPEL-----------TENLVKLVEEGKIRWKQKEFEPSDIVD 70 (202)
T ss_pred CCEEEEECCCHHHH-------HHHHHHHHCCCeEEEE-cCCC-----------CHHHHHHHhCCCEEEEecCCChhhcCC
Confidence 45688887776553 2233444456665444 3322 112222222334444444444556677
Q ss_pred CCcccccccCCchhHHHHhh----cCCCEeecCc--ccccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHH
Q 011339 355 PSIGGFLTHCSWNSSLEGIS----AGVPLITWPL--YGDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDV 428 (488)
Q Consensus 355 ~~~~~~IthgG~gs~~eal~----~GvP~v~~P~--~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l 428 (488)
+++ +|.--+.-.+.+.++ .++++-++-. ..| +..-..+ ++-++-+.+.+. ++++.+ +..|
T Consensus 71 adl--ViaaT~d~elN~~i~~~a~~~~lvn~~d~~~~~~-f~~Pa~~-~~g~l~iaIsT~---------G~sP~l-a~~l 136 (202)
T PRK06718 71 AFL--VIAATNDPRVNEQVKEDLPENALFNVITDAESGN-VVFPSAL-HRGKLTISVSTD---------GASPKL-AKKI 136 (202)
T ss_pred ceE--EEEcCCCHHHHHHHHHHHHhCCcEEECCCCccCe-EEEeeEE-EcCCeEEEEECC---------CCChHH-HHHH
Confidence 777 888777666655544 4555443321 111 2222333 233344444333 111222 3457
Q ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHHH
Q 011339 429 VKAINILMDEGGETDDRRKRAREFQIMAKRA 459 (488)
Q Consensus 429 ~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~ 459 (488)
++.|.+++. +..+.+-+.+.++++.+++.
T Consensus 137 r~~ie~~~~--~~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 137 RDELEALYD--ESYESYIDFLYECRQKIKEL 165 (202)
T ss_pred HHHHHHHcc--hhHHHHHHHHHHHHHHHHHh
Confidence 777776663 33456777778888877764
No 288
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=45.09 E-value=2e+02 Score=24.77 Aligned_cols=25 Identities=8% Similarity=0.038 Sum_probs=21.0
Q ss_pred ccccCCch------hHHHHhhcCCCEeecCc
Q 011339 360 FLTHCSWN------SSLEGISAGVPLITWPL 384 (488)
Q Consensus 360 ~IthgG~g------s~~eal~~GvP~v~~P~ 384 (488)
+++|.|-| .+.+|...++|+|++.-
T Consensus 67 ~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 67 CLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred EEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 88888754 77899999999999963
No 289
>PLN02939 transferase, transferring glycosyl groups
Probab=45.08 E-value=36 Score=38.19 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=30.2
Q ss_pred CCCEEEEEcC---C---CccCHHHHHHHHHHHHHCCCeEEEEeCCc
Q 011339 8 QQPHFVLFPF---L---AQGHMIPMIDTARLLAQHGAAITIVTTPA 47 (488)
Q Consensus 8 ~~~kvl~~~~---~---~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (488)
+.|||+|++. | +.|=-.-.-+|.++|+++||+|.++++..
T Consensus 480 ~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 480 SGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 6799999984 2 22223346688999999999999998853
No 290
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=44.33 E-value=2e+02 Score=29.36 Aligned_cols=44 Identities=11% Similarity=0.117 Sum_probs=35.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-HCCCeEEEEeCCcchhhhHH
Q 011339 11 HFVLFPFLAQGHMIPMIDTARLLA-QHGAAITIVTTPANAARFKT 54 (488)
Q Consensus 11 kvl~~~~~~~GHv~p~l~LA~~L~-~rGH~Vt~~~~~~~~~~~~~ 54 (488)
-++++..++.|-..-...||..|. ++|+.|.+++...+......
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~ 145 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIE 145 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHH
Confidence 346667789999999999999997 58999999999866554333
No 291
>PRK09739 hypothetical protein; Provisional
Probab=44.13 E-value=55 Score=29.31 Aligned_cols=38 Identities=8% Similarity=-0.037 Sum_probs=23.7
Q ss_pred CCCEEEEEcC-CCccC-HHH-HHHHHHHHHHCCCeEEEEeC
Q 011339 8 QQPHFVLFPF-LAQGH-MIP-MIDTARLLAQHGAAITIVTT 45 (488)
Q Consensus 8 ~~~kvl~~~~-~~~GH-v~p-~l~LA~~L~~rGH~Vt~~~~ 45 (488)
+||||+++.. |-.+- -.- .-.+++.|.++||+|+++--
T Consensus 2 ~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL 42 (199)
T PRK09739 2 QSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDL 42 (199)
T ss_pred CCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEh
Confidence 6889987755 43322 222 34456677778999997743
No 292
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=43.91 E-value=30 Score=30.60 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=29.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhh
Q 011339 11 HFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARF 52 (488)
Q Consensus 11 kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 52 (488)
||++--.|+.|-+. ...|.++|.++|++|.++.++.-...+
T Consensus 1 ~illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~A~~fv 41 (181)
T TIGR00421 1 RIVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDWAKETI 41 (181)
T ss_pred CEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHH
Confidence 35555555555544 488999999999999999998655544
No 293
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=43.88 E-value=41 Score=32.30 Aligned_cols=37 Identities=11% Similarity=0.123 Sum_probs=33.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
|||+++.=|+-|-..-.+.||..|+++|++|.++-..
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~D 37 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCD 37 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 6799999999999999999999999999999998554
No 294
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=43.67 E-value=31 Score=33.57 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=29.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
++||.++..+++| .+||+.|++.||+|++....
T Consensus 1 ~~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~ 33 (329)
T COG0240 1 MMKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRD 33 (329)
T ss_pred CceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecC
Confidence 5789999999999 58999999999999998765
No 295
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=43.66 E-value=52 Score=28.02 Aligned_cols=75 Identities=12% Similarity=0.169 Sum_probs=52.0
Q ss_pred ecCcccccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHH
Q 011339 381 TWPLYGDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRAT 460 (488)
Q Consensus 381 ~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~ 460 (488)
..|+...+-.+|+.++ +. -..|+. -..+.|.+.+..|+.|.- .-.-.+.+++..+.++
T Consensus 77 pyPWt~~~L~aa~el~-ee--~eeLs~---------------deke~~~~sl~dL~~d~P---kT~vA~~rfKk~~~K~- 134 (158)
T PF10083_consen 77 PYPWTENALEAANELI-EE--DEELSP---------------DEKEQFKESLPDLTKDTP---KTKVAATRFKKILSKA- 134 (158)
T ss_pred CCchHHHHHHHHHHHH-HH--hhcCCH---------------HHHHHHHhhhHHHhhcCC---ccHHHHHHHHHHHHHH-
Confidence 3678788888888776 32 111221 345678899999887542 6777888888888877
Q ss_pred hcCCchHHHHHHHHHHHHc
Q 011339 461 EETRSSSLMIKLLIQDIMQ 479 (488)
Q Consensus 461 ~~gg~~~~~~~~~i~~~~~ 479 (488)
|-+...++.+++-++..
T Consensus 135 --g~~v~~~~~dIlVdv~S 151 (158)
T PF10083_consen 135 --GSIVGDAIRDILVDVAS 151 (158)
T ss_pred --hHHHHHHHHHHHHHHHH
Confidence 77777888888777643
No 296
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=43.49 E-value=2.5e+02 Score=27.55 Aligned_cols=48 Identities=13% Similarity=0.129 Sum_probs=39.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHH
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVV 56 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~ 56 (488)
+--|+|+..-+.|-..-.--||+.|.+.|+.|.++....+..-...++
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL 186 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQL 186 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHH
Confidence 344588888999999999999999999999999999987665444443
No 297
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=43.44 E-value=93 Score=30.62 Aligned_cols=97 Identities=11% Similarity=0.125 Sum_probs=59.2
Q ss_pred CCeEEEEeeCCcc--C--CChHHHHHHHHHHhcCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhcC---CCeE-Eecc-
Q 011339 275 PNSVVYVCLGSIC--N--LTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKG---RGIL-ILGW- 345 (488)
Q Consensus 275 ~~~vV~vs~Gs~~--~--~~~~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~---~nv~-~~~~- 345 (488)
+++.|.+..|+.. . .+.+.+.++++.+...+.++++. ++.. +... -+.+...... .+++ +.+-
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~-Gg~~-e~~~------~~~i~~~~~~~~~~~~~~l~g~~ 250 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLF-GSAK-DHEA------GNEILAALNTEQQAWCRNLAGET 250 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEE-eCHH-hHHH------HHHHHHhcccccccceeeccCCC
Confidence 5568888888742 2 67888999998887556676654 4332 1111 1111111111 1121 2222
Q ss_pred -cch-hhhhccCCcccccccCCchhHHHHhhcCCCEeec
Q 011339 346 -APQ-VLILSHPSIGGFLTHCSWNSSLEGISAGVPLITW 382 (488)
Q Consensus 346 -~pq-~~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~ 382 (488)
+.+ .++++++++ ||+. -.|-+.=|.+.|+|+|++
T Consensus 251 sL~el~ali~~a~l--~I~n-DTGp~HlAaA~g~P~val 286 (348)
T PRK10916 251 QLEQAVILIAACKA--IVTN-DSGLMHVAAALNRPLVAL 286 (348)
T ss_pred CHHHHHHHHHhCCE--EEec-CChHHHHHHHhCCCEEEE
Confidence 333 558899998 9986 567888999999999875
No 298
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=43.39 E-value=2.1e+02 Score=24.55 Aligned_cols=26 Identities=12% Similarity=0.103 Sum_probs=20.4
Q ss_pred cccccCCch------hHHHHhhcCCCEeecCc
Q 011339 359 GFLTHCSWN------SSLEGISAGVPLITWPL 384 (488)
Q Consensus 359 ~~IthgG~g------s~~eal~~GvP~v~~P~ 384 (488)
+++++.|-| .+.+|...++|+|++.-
T Consensus 62 v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 62 ALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred EEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 377776644 67799999999999964
No 299
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=42.88 E-value=2.4e+02 Score=26.97 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=34.7
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHH
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTV 55 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (488)
.+++|+++..|..|. .+|+.|+++||.|.++....+.+..+..
T Consensus 2 ~~~~v~IvG~GliG~-----s~a~~l~~~g~~v~i~g~d~~~~~~~~a 44 (279)
T COG0287 2 ASMKVGIVGLGLMGG-----SLARALKEAGLVVRIIGRDRSAATLKAA 44 (279)
T ss_pred CCcEEEEECCchHHH-----HHHHHHHHcCCeEEEEeecCcHHHHHHH
Confidence 468899999998886 5799999999999999887665554443
No 300
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=42.81 E-value=24 Score=36.31 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=41.8
Q ss_pred hHHHHhhcCCCEeecCcccccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHH
Q 011339 368 SSLEGISAGVPLITWPLYGDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRK 447 (488)
Q Consensus 368 s~~eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~ 447 (488)
++.||+++|.|+|++=-. .-+..+ +..--|...++. .-....+.+++.++..|+ +++.
T Consensus 381 v~IEAMa~glPvvAt~~G----GP~EiV-~~~~tG~l~dp~-------------~e~~~~~a~~~~kl~~~p----~l~~ 438 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATNNG----GPAEIV-VHGVTGLLIDPG-------------QEAVAELADALLKLRRDP----ELWA 438 (495)
T ss_pred eeHHHHhcCCCEEEecCC----CceEEE-EcCCcceeeCCc-------------hHHHHHHHHHHHHHhcCH----HHHH
Confidence 789999999999987543 334444 244446666653 244557999999999999 5544
Q ss_pred HH
Q 011339 448 RA 449 (488)
Q Consensus 448 ~a 449 (488)
+.
T Consensus 439 ~~ 440 (495)
T KOG0853|consen 439 RM 440 (495)
T ss_pred HH
Confidence 43
No 301
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=42.73 E-value=2.4e+02 Score=26.74 Aligned_cols=38 Identities=11% Similarity=0.174 Sum_probs=32.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcc
Q 011339 11 HFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPAN 48 (488)
Q Consensus 11 kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~ 48 (488)
-|+|+..++-|-..-...||..|++.|+.|.+++...+
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 44666677999999999999999999999999988754
No 302
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=42.64 E-value=1.8e+02 Score=25.83 Aligned_cols=64 Identities=9% Similarity=0.181 Sum_probs=44.0
Q ss_pred CCCE-EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC---cchhhhHHHHHhhhcCCCCeEEEEee
Q 011339 8 QQPH-FVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP---ANAARFKTVVARAMQSGLPLQLIEIQ 72 (488)
Q Consensus 8 ~~~k-vl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~ 72 (488)
.+.+ |+|+..+..-|---...+++.|++.|..|.+++-. .+.+.++..+++. ..+.+-+++.+|
T Consensus 106 ~~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~-~~~~~s~~~~~~ 173 (187)
T cd01452 106 QKQRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAV-NGKDGSHLVSVP 173 (187)
T ss_pred CcceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHh-cCCCCceEEEeC
Confidence 4456 68888887888777889999999999999888654 4445555444443 223346677765
No 303
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=42.34 E-value=58 Score=27.84 Aligned_cols=60 Identities=15% Similarity=0.232 Sum_probs=38.2
Q ss_pred CEEEEEcC-------CCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEE
Q 011339 10 PHFVLFPF-------LAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIE 70 (488)
Q Consensus 10 ~kvl~~~~-------~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (488)
.|++++.. .+..|+.-++.=|++|++.|.+..++.+-++ ..+...+.........++|+.
T Consensus 44 KKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSVnD-pFv~~aW~k~~g~~~~V~f~a 110 (171)
T KOG0541|consen 44 KKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSVND-PFVMKAWAKSLGANDHVKFVA 110 (171)
T ss_pred ceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEecCc-HHHHHHHHhhcCccceEEEEe
Confidence 46665543 3788999999999999999999777765322 233334333222233566654
No 304
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=42.21 E-value=50 Score=28.52 Aligned_cols=29 Identities=28% Similarity=0.181 Sum_probs=24.5
Q ss_pred EEEEeeCCccCCChHHHHHHHHHHhcCCC
Q 011339 278 VVYVCLGSICNLTSSQMIELGLGLEASKK 306 (488)
Q Consensus 278 vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~ 306 (488)
.+|+++||-.......++..+.++.+.+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 69999999999777778888888887664
No 305
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=41.97 E-value=2.2e+02 Score=27.55 Aligned_cols=31 Identities=16% Similarity=0.196 Sum_probs=22.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTT 45 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~ 45 (488)
|||+|+..+. -.+...+.|.++||+|..+.+
T Consensus 1 mkIvf~G~~~-----~a~~~L~~L~~~~~~i~~Vvt 31 (309)
T PRK00005 1 MRIVFMGTPE-----FAVPSLKALLESGHEVVAVVT 31 (309)
T ss_pred CEEEEECCCH-----HHHHHHHHHHHCCCcEEEEEC
Confidence 6898886543 346778888888999886654
No 306
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=41.95 E-value=2.1e+02 Score=27.12 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=23.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
++-++++.-+.|= -..+|+.|++|||+|.++.-.
T Consensus 6 ~~~~lITGASsGI---G~~~A~~lA~~g~~liLvaR~ 39 (265)
T COG0300 6 GKTALITGASSGI---GAELAKQLARRGYNLILVARR 39 (265)
T ss_pred CcEEEEECCCchH---HHHHHHHHHHCCCEEEEEeCc
Confidence 4445555433331 267899999999999998654
No 307
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=41.90 E-value=2.3e+02 Score=28.32 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=27.9
Q ss_pred CCCEEEEEc-CCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 8 QQPHFVLFP-FLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 8 ~~~kvl~~~-~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
.++||+++. .|..|. .+|+.|.++||+|+++...
T Consensus 97 ~~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCC
Confidence 347899997 787775 6899999999999999754
No 308
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=41.84 E-value=2.4e+02 Score=24.59 Aligned_cols=87 Identities=9% Similarity=0.050 Sum_probs=44.4
Q ss_pred ceEEEcCchhhhHHHHHHHHhhcCCceEEeCCCCCCCCCcchhhhhCCCCcccchhhhcccCCCCCCeEEEEeeCCccCC
Q 011339 210 YGIIINTFEELELEYVKECKKTKGGKVWCLGPVSLCNKQDIDKAERGKKAAVDISECLNWLDSWPPNSVVYVCLGSICNL 289 (488)
Q Consensus 210 ~~~l~~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~ 289 (488)
...++-+-++.-......+++.+ |++..+|-....-.. ...+++.+.+.+..+. +|+|++|+=-+
T Consensus 48 ~v~llG~~~~~~~~~~~~l~~~y-p~l~i~g~~~g~~~~------------~~~~~i~~~I~~~~pd-iv~vglG~PkQ- 112 (171)
T cd06533 48 RVFLLGAKPEVLEKAAERLRARY-PGLKIVGYHHGYFGP------------EEEEEIIERINASGAD-ILFVGLGAPKQ- 112 (171)
T ss_pred eEEEECCCHHHHHHHHHHHHHHC-CCcEEEEecCCCCCh------------hhHHHHHHHHHHcCCC-EEEEECCCCHH-
Confidence 34455555554445555566655 677777733222110 0233466777665444 99999985332
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEEeCC
Q 011339 290 TSSQMIELGLGLEASKKPFIWVIRGG 315 (488)
Q Consensus 290 ~~~~~~~~~~a~~~~~~~~v~~~~~~ 315 (488)
+.+. .+-....+..++..+++.
T Consensus 113 -E~~~---~~~~~~l~~~v~~~vG~~ 134 (171)
T cd06533 113 -ELWI---ARHKDRLPVPVAIGVGGS 134 (171)
T ss_pred -HHHH---HHHHHHCCCCEEEEecee
Confidence 2222 222333455655555553
No 309
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=41.75 E-value=37 Score=33.21 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=28.9
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
.+|||.|+..+..| ..+|..|+++||+|+++...
T Consensus 3 ~~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 3 HGMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 46799999888877 46899999999999998774
No 310
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=41.09 E-value=65 Score=26.66 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=23.9
Q ss_pred CEEEE-EcCCCccCHHH--HHHHHHHHHHCCCeE-EEEeC
Q 011339 10 PHFVL-FPFLAQGHMIP--MIDTARLLAQHGAAI-TIVTT 45 (488)
Q Consensus 10 ~kvl~-~~~~~~GHv~p--~l~LA~~L~~rGH~V-t~~~~ 45 (488)
||++| +..+-+|+-.. .+.+|+.+.+.||+| .++-.
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~ 40 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFY 40 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEe
Confidence 56644 34455666554 677899999999994 55543
No 311
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=40.92 E-value=1.1e+02 Score=26.10 Aligned_cols=139 Identities=13% Similarity=0.127 Sum_probs=67.0
Q ss_pred EEEEeeCCccCCChHHHHHHHHHHhcCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEEecccchhhhhccCCc
Q 011339 278 VVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSI 357 (488)
Q Consensus 278 vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~~~~ 357 (488)
.|-|-+||... ....+++...++..+..+-..+..-.| .|+.+... +....- ..+++
T Consensus 2 ~V~Ii~gs~SD--~~~~~~a~~~L~~~gi~~~~~V~saHR---------~p~~l~~~-----------~~~~~~-~~~~v 58 (150)
T PF00731_consen 2 KVAIIMGSTSD--LPIAEEAAKTLEEFGIPYEVRVASAHR---------TPERLLEF-----------VKEYEA-RGADV 58 (150)
T ss_dssp EEEEEESSGGG--HHHHHHHHHHHHHTT-EEEEEE--TTT---------SHHHHHHH-----------HHHTTT-TTESE
T ss_pred eEEEEeCCHHH--HHHHHHHHHHHHHcCCCEEEEEEeccC---------CHHHHHHH-----------HHHhcc-CCCEE
Confidence 46677777664 555667777777777665555544442 23322111 100000 11233
Q ss_pred ccccccCCch----hHHHHhhcCCCEeecCcccccchhH----HHHHHHhcceEEecccCCCCCCcccccccccCHHHHH
Q 011339 358 GGFLTHCSWN----SSLEGISAGVPLITWPLYGDQFWNE----KLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVV 429 (488)
Q Consensus 358 ~~~IthgG~g----s~~eal~~GvP~v~~P~~~DQ~~na----~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~ 429 (488)
||.=+|.. ++.-++ .-.|+|.+|....+.... ..+..-.|+++..-.- ++..++..++
T Consensus 59 --iIa~AG~~a~Lpgvva~~-t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i-----------~~~~nAA~~A 124 (150)
T PF00731_consen 59 --IIAVAGMSAALPGVVASL-TTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI-----------NNGFNAALLA 124 (150)
T ss_dssp --EEEEEESS--HHHHHHHH-SSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS-----------THHHHHHHHH
T ss_pred --EEEECCCcccchhhheec-cCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc-----------cCchHHHHHH
Confidence 77766654 333333 479999999876644211 1221122444333210 1134555555
Q ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHH
Q 011339 430 KAINILMDEGGETDDRRKRAREFQIMAKR 458 (488)
Q Consensus 430 ~ai~~~l~~~~~~~~~~~~a~~l~~~~~~ 458 (488)
-.|..+ .|+ +++++.+..++..++
T Consensus 125 ~~ILa~-~d~----~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 125 ARILAL-KDP----ELREKLRAYREKMKE 148 (150)
T ss_dssp HHHHHT-T-H----HHHHHHHHHHHHHHH
T ss_pred HHHHhc-CCH----HHHHHHHHHHHHHHc
Confidence 544433 445 888888888887664
No 312
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=40.68 E-value=1.7e+02 Score=31.76 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=22.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEE-EEeCC
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAIT-IVTTP 46 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt-~~~~~ 46 (488)
|||+|+..|..+ +..-++|.+.||+|. ++|.+
T Consensus 1 mkivf~g~~~~a-----~~~l~~L~~~~~~i~~V~t~p 33 (660)
T PRK08125 1 MKAVVFAYHDIG-----CVGIEALLAAGYEIAAVFTHT 33 (660)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCcEEEEEeCC
Confidence 688888655443 344478888999998 45544
No 313
>PRK07773 replicative DNA helicase; Validated
Probab=40.62 E-value=1.2e+02 Score=34.25 Aligned_cols=43 Identities=16% Similarity=0.118 Sum_probs=35.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHC-CCeEEEEeCCcchhhhHH
Q 011339 12 FVLFPFLAQGHMIPMIDTARLLAQH-GAAITIVTTPANAARFKT 54 (488)
Q Consensus 12 vl~~~~~~~GHv~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~~~~ 54 (488)
+++...|+.|-..-.+.+|...+.+ |..|.|++.+.....+..
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~ 263 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVM 263 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHH
Confidence 5677789999999999999998865 889999998866665433
No 314
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=40.45 E-value=1.4e+02 Score=30.53 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=25.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTT 45 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~ 45 (488)
+||||++..++..| +|++.|++.|++|.++..
T Consensus 2 ~~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~ 33 (435)
T PRK06395 2 TMKVMLVGSGGRED-----AIARAIKRSGAILFSVIG 33 (435)
T ss_pred ceEEEEECCcHHHH-----HHHHHHHhCCCeEEEEEC
Confidence 57999988887776 578889888987777744
No 315
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=40.31 E-value=3.2e+02 Score=25.63 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=32.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcch
Q 011339 12 FVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANA 49 (488)
Q Consensus 12 vl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~ 49 (488)
+++...|+.|-..-.+.++...+++|..|.|++.+...
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPA 76 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCc
Confidence 46677789999999999999998999999999987433
No 316
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=40.00 E-value=2.5e+02 Score=25.40 Aligned_cols=33 Identities=12% Similarity=0.107 Sum_probs=26.9
Q ss_pred EEEEcC-CCccCHHHHHHHHHHHHHCCCeEEEEe
Q 011339 12 FVLFPF-LAQGHMIPMIDTARLLAQHGAAITIVT 44 (488)
Q Consensus 12 vl~~~~-~~~GHv~p~l~LA~~L~~rGH~Vt~~~ 44 (488)
|++.+. +.-|-..-.+.|++.|+++|++|.++-
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 444433 578999999999999999999998864
No 317
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=39.98 E-value=2.4e+02 Score=24.07 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=24.0
Q ss_pred CCCccCHHHHHHHHHHHHHCCCeEEEE
Q 011339 17 FLAQGHMIPMIDTARLLAQHGAAITIV 43 (488)
Q Consensus 17 ~~~~GHv~p~l~LA~~L~~rGH~Vt~~ 43 (488)
.+.-|-..-.+.|++.|+++|.+|.++
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 457788888999999999999999986
No 318
>PRK04148 hypothetical protein; Provisional
Probab=39.88 E-value=59 Score=27.21 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=25.4
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
+.+||+.+..| .| ..+|..|++.||+|+.+=..
T Consensus 16 ~~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~ 48 (134)
T PRK04148 16 KNKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDIN 48 (134)
T ss_pred cCCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECC
Confidence 56789999888 44 24688888999999988543
No 319
>PRK11519 tyrosine kinase; Provisional
Probab=39.79 E-value=5.2e+02 Score=28.47 Aligned_cols=39 Identities=10% Similarity=0.187 Sum_probs=32.0
Q ss_pred CCCEEEEEcC--CCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 8 QQPHFVLFPF--LAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 8 ~~~kvl~~~~--~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
++.|+++++. |+-|--.-...||..|+..|++|.++-..
T Consensus 524 ~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~D 564 (719)
T PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCD 564 (719)
T ss_pred CCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 4567777765 67888888899999999999999999554
No 320
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=39.76 E-value=33 Score=33.32 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=27.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
||||+|+..+..| ..+|..|+++||+|+++...
T Consensus 1 mmkI~iiG~G~mG-----~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 1 MMKIAVLGAGSWG-----TALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEECC
Confidence 5789999887776 46788899999999988764
No 321
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=39.50 E-value=48 Score=29.13 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=29.8
Q ss_pred EEEEcCCCccCHHH-HHHHHHHHHH-CCCeEEEEeCCcchhhhH
Q 011339 12 FVLFPFLAQGHMIP-MIDTARLLAQ-HGAAITIVTTPANAARFK 53 (488)
Q Consensus 12 vl~~~~~~~GHv~p-~l~LA~~L~~-rGH~Vt~~~~~~~~~~~~ 53 (488)
|++.-.++ ||... .+.+.++|++ +||+|.++.++.-...++
T Consensus 2 i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 2 IAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVK 44 (174)
T ss_pred EEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHH
Confidence 44444444 78766 8999999985 599999999986555443
No 322
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=39.47 E-value=2.4e+02 Score=32.06 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=28.5
Q ss_pred hHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEEe
Q 011339 107 QLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISFH 148 (488)
Q Consensus 107 ~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~ 148 (488)
..++.+++++ .+||++|.... ...+|+++|||++...
T Consensus 378 ~~el~~~i~~--~~pDLlig~~~---~~~~a~k~giP~~~~~ 414 (917)
T PRK14477 378 TAGLLRVMRE--KMPDLIVAGGK---TKFLALKTRTPFLDIN 414 (917)
T ss_pred HHHHHHHHHh--cCCCEEEecCc---hhhHHHHcCCCeEEcc
Confidence 3456677777 79999998644 5668999999999654
No 323
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=39.18 E-value=42 Score=30.32 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=24.7
Q ss_pred CEEEEEcCCCccC--HHHHHHHHHHHHHC---CCeEEEEeCC
Q 011339 10 PHFVLFPFLAQGH--MIPMIDTARLLAQH---GAAITIVTTP 46 (488)
Q Consensus 10 ~kvl~~~~~~~GH--v~p~l~LA~~L~~r---GH~Vt~~~~~ 46 (488)
|||+++.|+-+|+ .||...++++|..+ |++|....-|
T Consensus 1 m~ILvTGFgpF~~~~~NpS~~~v~~L~~~~~~~~~v~~~~lP 42 (202)
T PF01470_consen 1 MRILVTGFGPFGGVPVNPSWELVKRLPGELIGGAEVHTRELP 42 (202)
T ss_dssp EEEEEEEE-S-TT-SS-HHHHHHHHHTTSEETTEEEEEEEE-
T ss_pred CEEEEecccCCCCCCCChHHHHHHHcCCCcCCCceEEEEEec
Confidence 6899999875554 79999999999853 5555554444
No 324
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=38.87 E-value=2.9e+02 Score=24.72 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=32.5
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEE
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIV 43 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~ 43 (488)
++-.|.+++..+.|-....+.+|-+.+.+|+.|.++
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~iv 56 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVV 56 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 456789999999999999999999999999999987
No 325
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=38.80 E-value=96 Score=32.97 Aligned_cols=90 Identities=13% Similarity=0.083 Sum_probs=51.0
Q ss_pred eeCCccCCCh-HHHHHHHHHHhcCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEEeccc-chhhh--------
Q 011339 282 CLGSICNLTS-SQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWA-PQVLI-------- 351 (488)
Q Consensus 282 s~Gs~~~~~~-~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~-pq~~l-------- 351 (488)
|.||...... .....+++.|++.+.+.|+-+.+.. . +| -++......++....-. .+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~l~~~L~~~GV~~vFgvpG~~-~--------~~-l~dal~~~~~i~~i~~~hE~~A~~~Adgyar 72 (564)
T PRK08155 3 SSGTTSTRKRFTGAELIVRLLERQGIRIVTGIPGGA-I--------LP-LYDALSQSTQIRHILARHEQGAGFIAQGMAR 72 (564)
T ss_pred CCCCCccCCcccHHHHHHHHHHHcCCCEEEeCCCcc-c--------HH-HHHHHhccCCceEEEeccHHHHHHHHHHHHH
Confidence 3455554333 3456788888888988888887765 1 11 11111112233322111 11111
Q ss_pred -hccCCcccccccCCch------hHHHHhhcCCCEeecC
Q 011339 352 -LSHPSIGGFLTHCSWN------SSLEGISAGVPLITWP 383 (488)
Q Consensus 352 -l~~~~~~~~IthgG~g------s~~eal~~GvP~v~~P 383 (488)
-.++.+ +++|.|-| .+.+|...++|+|++.
T Consensus 73 ~tg~~gv--~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 73 TTGKPAV--CMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred HcCCCeE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 123444 88887754 7889999999999985
No 326
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=38.66 E-value=3.3e+02 Score=25.39 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=23.0
Q ss_pred CCeEEE-EcCCC-cchHHHHHhcCCCcEEEecc
Q 011339 120 KPSCIV-SDTCY-PWTVDTAARFNIPRISFHGF 150 (488)
Q Consensus 120 ~pD~vv-~D~~~-~~~~~~a~~lgiP~v~~~~~ 150 (488)
-||+++ .|+.. --|..=|..+|||+|.+.-.
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDT 188 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDT 188 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecC
Confidence 399886 66643 36777899999999997544
No 327
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=38.66 E-value=1.6e+02 Score=29.87 Aligned_cols=34 Identities=18% Similarity=0.067 Sum_probs=26.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcc
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPAN 48 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~ 48 (488)
|||+++..+..+ ..|+++|++-|+.+++++.+.+
T Consensus 1 ~kiliiG~G~~~-----~~l~~~~~~~~~~~~~~~~~~~ 34 (423)
T TIGR00877 1 MKVLVIGNGGRE-----HALAWKLAQSPLVKYVYVAPGN 34 (423)
T ss_pred CEEEEECCChHH-----HHHHHHHHhCCCccEEEEECCC
Confidence 689998887774 4688888888888787766644
No 328
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=38.15 E-value=2.9e+02 Score=28.40 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEE
Q 011339 108 LPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISF 147 (488)
Q Consensus 108 ~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~ 147 (488)
.++.+.+++ .+||++|.... +..+|+++|||++.+
T Consensus 377 ~e~~~~i~~--~~pdllig~s~---~~~~A~~lgip~~~~ 411 (443)
T TIGR01862 377 LEFEEILEK--LKPDIIFSGIK---EKFVAQKLGVPYRQM 411 (443)
T ss_pred HHHHHHHHh--cCCCEEEEcCc---chhhhhhcCCCeEec
Confidence 345566666 69999998753 577899999999875
No 329
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=37.96 E-value=1.2e+02 Score=30.74 Aligned_cols=29 Identities=21% Similarity=0.044 Sum_probs=21.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHC-CCeEEEE
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQH-GAAITIV 43 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~r-GH~Vt~~ 43 (488)
|||+++..++..| +|++.|++. |+.+.++
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~~~~~~~i~~ 30 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQSPLVEKVYV 30 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHhCCCCCEEEE
Confidence 6899999987776 599999886 5444444
No 330
>PRK05636 replicative DNA helicase; Provisional
Probab=37.87 E-value=1.6e+02 Score=30.81 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=33.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-HCCCeEEEEeCCcchhhhH
Q 011339 12 FVLFPFLAQGHMIPMIDTARLLA-QHGAAITIVTTPANAARFK 53 (488)
Q Consensus 12 vl~~~~~~~GHv~p~l~LA~~L~-~rGH~Vt~~~~~~~~~~~~ 53 (488)
+++...|+.|-..-.+.+|...+ +.|..|.|++.+.....+.
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~ 310 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIV 310 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHH
Confidence 46677899999999999998877 4588999998886655543
No 331
>PLN02285 methionyl-tRNA formyltransferase
Probab=37.77 E-value=2.3e+02 Score=27.83 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=23.1
Q ss_pred CCCCCEEEEEcCCCccCHHHHHHHHHHHHH------CCCeEEEEeCC
Q 011339 6 SCQQPHFVLFPFLAQGHMIPMIDTARLLAQ------HGAAITIVTTP 46 (488)
Q Consensus 6 ~~~~~kvl~~~~~~~GHv~p~l~LA~~L~~------rGH~Vt~~~~~ 46 (488)
|.++|||+|+..+..+. ..-++|.+ .+|+|..+.+.
T Consensus 3 ~~~~~kI~f~Gt~~fa~-----~~L~~L~~~~~~~~~~~~iv~Vvt~ 44 (334)
T PLN02285 3 SGRKKRLVFLGTPEVAA-----TVLDALLDASQAPDSAFEVAAVVTQ 44 (334)
T ss_pred CCCccEEEEEECCHHHH-----HHHHHHHhhhhccCCCCeEEEEEeC
Confidence 34889999997765542 33344444 37888876554
No 332
>PRK06756 flavodoxin; Provisional
Probab=37.73 E-value=62 Score=27.31 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=29.6
Q ss_pred CCEEEEEcCCCccCHHHHH-HHHHHHHHCCCeEEEEeC
Q 011339 9 QPHFVLFPFLAQGHMIPMI-DTARLLAQHGAAITIVTT 45 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l-~LA~~L~~rGH~Vt~~~~ 45 (488)
||||+++-...+||.--+. .|++.|.++|++|.+.-.
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 5789888888999998854 468888889999987643
No 333
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=37.61 E-value=94 Score=30.37 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=30.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 12 FVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 12 vl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
|.-++.|+.|-.--.+.||++|++||..+-+++-.
T Consensus 52 VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRG 86 (336)
T COG1663 52 VGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRG 86 (336)
T ss_pred EccEEECCCCcCHHHHHHHHHHHhcCCeeEEEecC
Confidence 34567899999999999999999999999999775
No 334
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=37.35 E-value=45 Score=32.30 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=28.9
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
.+|||.|+..+..| .++|+.|.++||+|++....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 56899999888777 47899999999999988654
No 335
>PRK05748 replicative DNA helicase; Provisional
Probab=37.27 E-value=2e+02 Score=29.62 Aligned_cols=43 Identities=12% Similarity=0.134 Sum_probs=35.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHH-CCCeEEEEeCCcchhhhHH
Q 011339 12 FVLFPFLAQGHMIPMIDTARLLAQ-HGAAITIVTTPANAARFKT 54 (488)
Q Consensus 12 vl~~~~~~~GHv~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~~~~ 54 (488)
+++...|+.|-..-.+.+|...+. .|+.|.|++.+.....+..
T Consensus 206 ivIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~ 249 (448)
T PRK05748 206 IIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVM 249 (448)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHH
Confidence 577778999999999999999874 5999999998866655433
No 336
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=37.22 E-value=56 Score=30.77 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=32.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
|+|++..=|+-|...-...||..|+++|++|.++=..
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 6788887789999999999999999999999988444
No 337
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=37.09 E-value=67 Score=29.17 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=22.1
Q ss_pred CEEEEEcCCCcc--CHHHHHHHHHHHHHC
Q 011339 10 PHFVLFPFLAQG--HMIPMIDTARLLAQH 36 (488)
Q Consensus 10 ~kvl~~~~~~~G--Hv~p~l~LA~~L~~r 36 (488)
|||+++.|+-+| ..||...++++|...
T Consensus 1 M~ILvTGF~PF~~~~~NPS~~~~~~L~~~ 29 (208)
T PRK13194 1 MKVLVTGFEPFGGDKKNPTMDIVKALDGK 29 (208)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHhcccc
Confidence 689999886554 489999999999764
No 338
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=37.02 E-value=27 Score=32.64 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCc
Q 011339 24 IPMIDTARLLAQHGAAITIVTTPA 47 (488)
Q Consensus 24 ~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (488)
.-.-.|+++|+++||+|+++++..
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHHhcCCeEEEEEccc
Confidence 346788999999999999998863
No 339
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=36.94 E-value=76 Score=28.82 Aligned_cols=37 Identities=19% Similarity=0.091 Sum_probs=27.8
Q ss_pred CEEEEEcCCCccC--HHHHHHHHHHHHHC---CCeEEEEeCC
Q 011339 10 PHFVLFPFLAQGH--MIPMIDTARLLAQH---GAAITIVTTP 46 (488)
Q Consensus 10 ~kvl~~~~~~~GH--v~p~l~LA~~L~~r---GH~Vt~~~~~ 46 (488)
|||+++.|.-+|. .||...++++|... |++|....-|
T Consensus 1 M~vLiTGF~PF~g~~~NPS~~~v~~L~~~~~~~~~v~~~~LP 42 (209)
T PRK13193 1 MTVLLFGFEPFLEYKENPSQLIVEALNGSTILKEEVKGVILP 42 (209)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHHhhccccCCceEEEEEeC
Confidence 6799999875554 89999999999863 5666555444
No 340
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=36.86 E-value=54 Score=21.47 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHccCcchHHHHHHHHHHH
Q 011339 424 KKEDVVKAINILMDEGGETDDRRKRAREFQ 453 (488)
Q Consensus 424 ~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~ 453 (488)
++++|.+||..+.++. -++++.|+++.
T Consensus 1 tee~l~~Ai~~v~~g~---~S~r~AA~~yg 27 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK---MSIRKAAKKYG 27 (45)
T ss_dssp -HHHHHHHHHHHHTTS---S-HHHHHHHHT
T ss_pred CHHHHHHHHHHHHhCC---CCHHHHHHHHC
Confidence 5789999999998652 27777777653
No 341
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=36.82 E-value=56 Score=30.28 Aligned_cols=42 Identities=7% Similarity=-0.021 Sum_probs=30.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeCCcchhhhH
Q 011339 12 FVLFPFLAQGHMIPMIDTARLLAQH--GAAITIVTTPANAARFK 53 (488)
Q Consensus 12 vl~~~~~~~GHv~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~ 53 (488)
|++--.|+.+=+.=.+.|.+.|.++ ||+|.++.++.-...+.
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~ 45 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVR 45 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHh
Confidence 4444444444447899999999999 99999999985444443
No 342
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=36.58 E-value=46 Score=33.17 Aligned_cols=37 Identities=5% Similarity=0.117 Sum_probs=31.9
Q ss_pred CCCCCEEEEEcCCCccCHHHHHHHHHHHHHCC-------CeEEEEeCCc
Q 011339 6 SCQQPHFVLFPFLAQGHMIPMIDTARLLAQHG-------AAITIVTTPA 47 (488)
Q Consensus 6 ~~~~~kvl~~~~~~~GHv~p~l~LA~~L~~rG-------H~Vt~~~~~~ 47 (488)
+|+.+||.++..+++| .+||..|++.| |+|++.+-..
T Consensus 8 ~~~~~ki~ViGaG~wG-----tAlA~~l~~n~~~~~~~~~~V~lw~~~~ 51 (365)
T PTZ00345 8 RCGPLKVSVIGSGNWG-----SAISKVVGENTQRNYIFHNEVRMWVLEE 51 (365)
T ss_pred ccCCCeEEEECCCHHH-----HHHHHHHHhcCCcccCCCCeEEEEEecc
Confidence 6889999999999998 57899999997 8999987653
No 343
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=36.50 E-value=70 Score=32.34 Aligned_cols=46 Identities=20% Similarity=0.125 Sum_probs=36.1
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHH
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKT 54 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~ 54 (488)
++.||++...++. ...=...+.++|.+.|++|.++.++.-...+..
T Consensus 5 ~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~ 50 (399)
T PRK05579 5 AGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVTP 50 (399)
T ss_pred CCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhH
Confidence 5678888877765 455788999999999999999999865555543
No 344
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=36.34 E-value=1.2e+02 Score=27.96 Aligned_cols=44 Identities=9% Similarity=0.158 Sum_probs=35.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHC-CCeEEEEeCCcchhhhHHH
Q 011339 12 FVLFPFLAQGHMIPMIDTARLLAQH-GAAITIVTTPANAARFKTV 55 (488)
Q Consensus 12 vl~~~~~~~GHv~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~~~~~ 55 (488)
+++...|+.|=..-.+.++..++.+ |+.|.|++.+.....+...
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r 60 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQR 60 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHH
Confidence 4666678999999999999998887 9999999998766655443
No 345
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=36.32 E-value=57 Score=27.43 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=21.0
Q ss_pred HHHHHHHHHCCCeEEEEeCCcchhhhHH
Q 011339 27 IDTARLLAQHGAAITIVTTPANAARFKT 54 (488)
Q Consensus 27 l~LA~~L~~rGH~Vt~~~~~~~~~~~~~ 54 (488)
.-+|..|+++||+|++++.....+.+++
T Consensus 11 ~~~a~~L~~~g~~V~l~~r~~~~~~~~~ 38 (151)
T PF02558_consen 11 SLYAARLAQAGHDVTLVSRSPRLEAIKE 38 (151)
T ss_dssp HHHHHHHHHTTCEEEEEESHHHHHHHHH
T ss_pred HHHHHHHHHCCCceEEEEccccHHhhhh
Confidence 3579999999999999998753333433
No 346
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=36.24 E-value=61 Score=27.57 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=36.3
Q ss_pred CCEEEEEcCC-------CccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEE
Q 011339 9 QPHFVLFPFL-------AQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLI 69 (488)
Q Consensus 9 ~~kvl~~~~~-------~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (488)
..||+++..| +..|+--++.++.+++++|.+=.++.+= |-..+..++.+......+|.|+
T Consensus 37 gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSV-ND~FVm~AWak~~g~~~~I~fi 103 (165)
T COG0678 37 GKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSV-NDAFVMNAWAKSQGGEGNIKFI 103 (165)
T ss_pred CCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEe-CcHHHHHHHHHhcCCCccEEEe
Confidence 4567666543 5679999999999999999874444432 2223444444432222255554
No 347
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=36.21 E-value=2.8e+02 Score=29.16 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEE
Q 011339 108 LPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISF 147 (488)
Q Consensus 108 ~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~ 147 (488)
.++.+.+++ .+||+||.+. ....+|+++|||++.+
T Consensus 352 ~el~~~i~~--~~PdliiG~~---~er~~a~~lgiP~~~i 386 (519)
T PRK02910 352 LEVEDAIAE--AAPELVLGTQ---MERHSAKRLGIPCAVI 386 (519)
T ss_pred HHHHHHHHh--cCCCEEEEcc---hHHHHHHHcCCCEEEe
Confidence 466777777 7999999885 4667899999999875
No 348
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=36.09 E-value=3e+02 Score=30.18 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=28.5
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 011339 11 HFVLFPF-LAQGHMIPMIDTARLLAQHGAAITIVTT 45 (488)
Q Consensus 11 kvl~~~~-~~~GHv~p~l~LA~~L~~rGH~Vt~~~~ 45 (488)
.|++.+. +..|-..-.+.|++.|.++|++|.++=+
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKP 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKP 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 3555544 4688888999999999999999999854
No 349
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=36.03 E-value=56 Score=32.89 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=35.3
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHH
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKT 54 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~ 54 (488)
+..||++...++.|= .-...+.+.|.+.|++|.++.++.-...+..
T Consensus 2 ~~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~ 47 (390)
T TIGR00521 2 ENKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFITP 47 (390)
T ss_pred CCCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHHHH
Confidence 456788777765554 5589999999999999999999865555543
No 350
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=35.91 E-value=1.8e+02 Score=26.36 Aligned_cols=49 Identities=6% Similarity=-0.019 Sum_probs=36.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHC-CCeEEEEeCCcchhhhHHHHHh
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQH-GAAITIVTTPANAARFKTVVAR 58 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~~~~~~~~ 58 (488)
.-+++...|+.|-..-.++++.+-+++ |..|.|++.+...+.+.+....
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s 69 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKS 69 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHT
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHH
Confidence 346788889999999999988887888 9999999998776666555443
No 351
>PRK12827 short chain dehydrogenase; Provisional
Probab=35.82 E-value=1.6e+02 Score=26.83 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEe
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVT 44 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~ 44 (488)
++++++++. +.|.+- ..||++|+++||+|+++.
T Consensus 5 ~~~~ilItG--asg~iG--~~la~~l~~~g~~v~~~~ 37 (249)
T PRK12827 5 DSRRVLITG--GSGGLG--RAIAVRLAADGADVIVLD 37 (249)
T ss_pred CCCEEEEEC--CCChHH--HHHHHHHHHCCCeEEEEc
Confidence 456666553 334443 588999999999998864
No 352
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=35.73 E-value=2e+02 Score=28.00 Aligned_cols=39 Identities=8% Similarity=0.045 Sum_probs=33.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcc
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPAN 48 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~ 48 (488)
--|+++..++-|-..-+..||..|+.+|++|.+++...+
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 345777778999999999999999999999999988754
No 353
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=35.60 E-value=44 Score=32.96 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=28.1
Q ss_pred CCCCCCCCCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEE
Q 011339 1 MASEGSCQQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIV 43 (488)
Q Consensus 1 m~~~~~~~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~ 43 (488)
|++-. ++|||.++..++.|+ .+|..|+++|+.+.|.
T Consensus 1 ~~~~~--~~mkI~IiGaGa~G~-----alA~~La~~g~v~l~~ 36 (341)
T PRK12439 1 MAAAK--REPKVVVLGGGSWGT-----TVASICARRGPTLQWV 36 (341)
T ss_pred Ccccc--CCCeEEEECCCHHHH-----HHHHHHHHCCCEEEEe
Confidence 67665 889999999999986 4677788999644444
No 354
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=35.44 E-value=4.6e+02 Score=26.55 Aligned_cols=149 Identities=12% Similarity=0.163 Sum_probs=83.2
Q ss_pred CeEEEEeeCCccCCChHHHHHHHHHHhcCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEEecc-------cch
Q 011339 276 NSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGW-------APQ 348 (488)
Q Consensus 276 ~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~-------~pq 348 (488)
+.+++.-.||+... ....+++.+.+.++.|-...+... .+|.-|..+ +......++..-| ..+
T Consensus 7 k~IllgvTGsiaa~---k~~~lv~~L~~~g~~V~vv~T~~A------~~fi~~~~l-~~l~~~~V~~~~~~~~~~~~~~h 76 (399)
T PRK05579 7 KRIVLGVSGGIAAY---KALELVRRLRKAGADVRVVMTEAA------KKFVTPLTF-QALSGNPVSTDLWDPAAEAAMGH 76 (399)
T ss_pred CeEEEEEeCHHHHH---HHHHHHHHHHhCCCEEEEEECHhH------HHHHhHHHH-HHhhCCceEccccccccCCCcch
Confidence 34666666766542 233456667667776555544332 111012222 1122223433222 235
Q ss_pred hhhhccCCcccccccCCchhHHH-------------HhhcCCCEeecCcccc-------cchhHHHHHHHhcceEEeccc
Q 011339 349 VLILSHPSIGGFLTHCSWNSSLE-------------GISAGVPLITWPLYGD-------QFWNEKLIVQVLNIGVRIGVE 408 (488)
Q Consensus 349 ~~ll~~~~~~~~IthgG~gs~~e-------------al~~GvP~v~~P~~~D-------Q~~na~rv~e~~G~G~~l~~~ 408 (488)
.++.+.+++ ++|-=+-+||+.- ++.+++|++++|.... -..|..++ ++.|+-+.-+..
T Consensus 77 i~l~~~aD~-~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L-~~~G~~ii~P~~ 154 (399)
T PRK05579 77 IELAKWADL-VLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATL-RSRGVEIIGPAS 154 (399)
T ss_pred hhcccccCE-EEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHH-HHCCCEEECCCC
Confidence 556555665 5677777776543 3667999999995332 23477888 587766543322
Q ss_pred CCCCCCcccccccccCHHHHHHHHHHHHc
Q 011339 409 VPLDFGEEEEIGVLVKKEDVVKAINILMD 437 (488)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~l~~ai~~~l~ 437 (488)
..+- .-+.++++-.++++|...+.+.+.
T Consensus 155 g~la-~~~~g~gr~~~~~~I~~~~~~~~~ 182 (399)
T PRK05579 155 GRLA-CGDVGPGRMAEPEEIVAAAERALS 182 (399)
T ss_pred cccc-CCCcCCCCCCCHHHHHHHHHHHhh
Confidence 1111 234556778999999999988874
No 355
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=35.25 E-value=43 Score=32.07 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=29.3
Q ss_pred CCCCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 6 SCQQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 6 ~~~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
|+++.||.++..+..|. .+|..|+.+||+|+++...
T Consensus 2 ~~~~~~V~ViGaG~mG~-----~iA~~~a~~G~~V~l~d~~ 37 (286)
T PRK07819 2 SDAIQRVGVVGAGQMGA-----GIAEVCARAGVDVLVFETT 37 (286)
T ss_pred CCCccEEEEEcccHHHH-----HHHHHHHhCCCEEEEEECC
Confidence 34566899998887775 6788999999999999664
No 356
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=35.21 E-value=74 Score=31.17 Aligned_cols=42 Identities=12% Similarity=0.266 Sum_probs=30.8
Q ss_pred HHhhHHHHHHHHhcCCCCeEEEEcCCCcch----------HHHHHhcCCCcEEE
Q 011339 104 RLLQLPLENLLKELTPKPSCIVSDTCYPWT----------VDTAARFNIPRISF 147 (488)
Q Consensus 104 ~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~----------~~~a~~lgiP~v~~ 147 (488)
+...+.+...++. .+||++|+-+.+.++ ..+.+.++||.++-
T Consensus 66 eea~~~i~~mv~~--~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 66 EEALKKILEMVKK--LKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred HHHHHHHHHHHHh--cCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 3456677788888 899999999865432 23566899999873
No 357
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=35.08 E-value=3.3e+02 Score=27.46 Aligned_cols=40 Identities=13% Similarity=0.161 Sum_probs=32.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchh
Q 011339 11 HFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAA 50 (488)
Q Consensus 11 kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 50 (488)
-|+|+...+-|-..-+..||..+.++|+.|.+++...+..
T Consensus 208 ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 3456666688888889999999999999999999986643
No 358
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=35.06 E-value=95 Score=27.36 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=43.4
Q ss_pred HHHHhhcCCCEeecCcccc----c---chhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHH
Q 011339 369 SLEGISAGVPLITWPLYGD----Q---FWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINIL 435 (488)
Q Consensus 369 ~~eal~~GvP~v~~P~~~D----Q---~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~ 435 (488)
+..++..++|++++|.... . ..|-..+ ++.|+-+.-+....+.-| +.++++-.++++|.+.+.+-
T Consensus 105 ~a~a~~~~~pv~i~PaMn~~M~~~p~~~~nl~~L-~~~G~~vi~P~~g~la~g-~~g~g~~~~~~~i~~~~~~~ 176 (177)
T TIGR02113 105 VALALPPETPKLIAPAMNTKMYQNPITQRNIKIL-KKIGYQEIQPKESLLACG-DYGRGALADLDDILQTIKEI 176 (177)
T ss_pred HHHHcCCCCCEEEEeCCCHHHhCCHHHHHHHHHH-HHCCCEEECCCcCcccCC-CccccCCCCHHHHHHHHHHh
Confidence 4445445899999995332 1 2377788 588876655544444444 45578889999998888653
No 359
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=35.02 E-value=68 Score=28.90 Aligned_cols=39 Identities=18% Similarity=0.195 Sum_probs=31.1
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
-++||.+=..|+-|-.+.|+.=|++|+++|.+|.+...+
T Consensus 4 GrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 4 GRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred ccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 357888889999999999999999999999999987655
No 360
>PRK07236 hypothetical protein; Provisional
Probab=34.89 E-value=46 Score=33.28 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=29.9
Q ss_pred CCCCCCCCCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 011339 1 MASEGSCQQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTT 45 (488)
Q Consensus 1 m~~~~~~~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~ 45 (488)
|..+ ++++|+++.-+--| +.+|..|+++|++|+++--
T Consensus 1 ~~~~---~~~~ViIVGaG~aG-----l~~A~~L~~~G~~v~v~E~ 37 (386)
T PRK07236 1 MTHM---SGPRAVVIGGSLGG-----LFAALLLRRAGWDVDVFER 37 (386)
T ss_pred CCCC---CCCeEEEECCCHHH-----HHHHHHHHhCCCCEEEEec
Confidence 5665 67899999887433 7899999999999999853
No 361
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=34.85 E-value=2.5e+02 Score=26.29 Aligned_cols=103 Identities=18% Similarity=0.145 Sum_probs=55.8
Q ss_pred HHHHHHHHHHCC-CeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCccccCCCchhhHHHHHHHHH
Q 011339 26 MIDTARLLAQHG-AAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFDMLHSTDLVSNFFKSLR 104 (488)
Q Consensus 26 ~l~LA~~L~~rG-H~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 104 (488)
+-..++.|.+.+ ..|.+.++..+.+.+.. . ...+..+-+.-+|.+..+.+++...--....+
T Consensus 118 ~~eA~~~l~~~~~~~iflttGsk~L~~f~~-~---~~~~~r~~~RvLp~~~~~~g~~~~~iia~~GP------------- 180 (249)
T PF02571_consen 118 YEEAAELLKELGGGRIFLTTGSKNLPPFVP-A---PLPGERLFARVLPTPESALGFPPKNIIAMQGP------------- 180 (249)
T ss_pred HHHHHHHHhhcCCCCEEEeCchhhHHHHhh-c---ccCCCEEEEEECCCccccCCCChhhEEEEeCC-------------
Confidence 556777777777 77777666655555543 0 01222343444454433223322111111111
Q ss_pred HhhHHHHHHHHhcCCCCeEEEEcCCCc----chHHHHHhcCCCcEEE
Q 011339 105 LLQLPLENLLKELTPKPSCIVSDTCYP----WTVDTAARFNIPRISF 147 (488)
Q Consensus 105 ~~~~~l~~~l~~~~~~pD~vv~D~~~~----~~~~~a~~lgiP~v~~ 147 (488)
...+.=.+++++ .+.|+||+=..-- .=..+|+.+|||++.+
T Consensus 181 fs~e~n~al~~~--~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI 225 (249)
T PF02571_consen 181 FSKELNRALFRQ--YGIDVLVTKESGGSGFDEKIEAARELGIPVIVI 225 (249)
T ss_pred CCHHHHHHHHHH--cCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEE
Confidence 112233567777 8999999755322 2356999999999986
No 362
>PRK13236 nitrogenase reductase; Reviewed
Probab=34.78 E-value=76 Score=30.53 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=32.8
Q ss_pred CCCCCCCCCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 011339 1 MASEGSCQQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTT 45 (488)
Q Consensus 1 m~~~~~~~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~ 45 (488)
|.++ .+..|.|..=|+-|-..-.+.||..|+++|++|.++-.
T Consensus 1 ~~~~---~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~ 42 (296)
T PRK13236 1 MTDE---NIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGC 42 (296)
T ss_pred CCCc---CceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 5555 34344555557999999999999999999999999843
No 363
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=34.63 E-value=53 Score=31.44 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=26.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
+||.|+-.+..| .+.|+.|.++||+|++..-.
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~ 32 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRT 32 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCC
Confidence 478888888776 57899999999999998654
No 364
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=34.12 E-value=55 Score=27.30 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEeCCcchh
Q 011339 22 HMIPMIDTARLLAQHGAAITIVTTPANAA 50 (488)
Q Consensus 22 Hv~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 50 (488)
.+.-.+-++..|.++||+|+++.++.-..
T Consensus 12 q~p~alYl~~~Lk~~G~~v~Va~npAA~k 40 (139)
T PF09001_consen 12 QTPSALYLSYKLKKKGFEVVVAGNPAALK 40 (139)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEE-HHHHH
T ss_pred hhHHHHHHHHHHHhcCCeEEEecCHHHHh
Confidence 34447788999999999999999984333
No 365
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=34.01 E-value=3.5e+02 Score=26.46 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=24.3
Q ss_pred CCCeEEE-EcCCC-cchHHHHHhcCCCcEEEecch
Q 011339 119 PKPSCIV-SDTCY-PWTVDTAARFNIPRISFHGFS 151 (488)
Q Consensus 119 ~~pD~vv-~D~~~-~~~~~~a~~lgiP~v~~~~~~ 151 (488)
..||+|| .|... ..+..=|..+|||+|.+.-+.
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCC
Confidence 3799887 45543 367778999999999985443
No 366
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=34.01 E-value=79 Score=28.86 Aligned_cols=27 Identities=15% Similarity=0.221 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCcc--CHHHHHHHHHHHHH
Q 011339 9 QPHFVLFPFLAQG--HMIPMIDTARLLAQ 35 (488)
Q Consensus 9 ~~kvl~~~~~~~G--Hv~p~l~LA~~L~~ 35 (488)
|+||+++.|.-+| ..||.-.++++|..
T Consensus 1 m~~ILvTGF~PF~~~~~NPS~~~~~~L~~ 29 (215)
T PRK13197 1 MMKILVTGFDPFGGEKINPSWEAVKQLPG 29 (215)
T ss_pred CCEEEEeeccCCCCCCCCcHHHHHHHccc
Confidence 5789999987554 48999999999965
No 367
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=33.83 E-value=43 Score=34.52 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=25.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
|||+++.-+--| |+-|.+|+++||+||++-..
T Consensus 1 ~rVai~GaG~Ag-----L~~a~~La~~g~~vt~~ea~ 32 (485)
T COG3349 1 MRVAIAGAGLAG-----LAAAYELADAGYDVTLYEAR 32 (485)
T ss_pred CeEEEEcccHHH-----HHHHHHHHhCCCceEEEecc
Confidence 567777665443 78899999999999999654
No 368
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=33.69 E-value=63 Score=28.44 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=31.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCc
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPA 47 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (488)
...++|+..++.|-..=..++++++.++|+.|.|+..+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~ 85 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASD 85 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCc
Confidence 457899999999999999999999999999999998763
No 369
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=33.50 E-value=4.3e+02 Score=25.12 Aligned_cols=153 Identities=19% Similarity=0.110 Sum_probs=80.0
Q ss_pred hhHHHHHHHHhcCCCCeEEEEcCCCcc-------hHHHHHhcCCCcEEEecchHHHHHHHhhhcccccccccCCCCCccc
Q 011339 106 LQLPLENLLKELTPKPSCIVSDTCYPW-------TVDTAARFNIPRISFHGFSCFCLLCLYNLHTSTVQENVTSNSDYLV 178 (488)
Q Consensus 106 ~~~~l~~~l~~~~~~pD~vv~D~~~~~-------~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (488)
....+...++. .+--.+|+|+-+++ -...|+..||+++.+-..++..+.+..+- -+.....
T Consensus 66 ~~~~li~~l~~--g~~valVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lPG~sA~~tAL~~SG----------l~~~~F~ 133 (275)
T COG0313 66 KLPKLIPLLKK--GKSVALVSDAGTPLISDPGYELVRAAREAGIRVVPLPGPSALITALSASG----------LPSQRFL 133 (275)
T ss_pred HHHHHHHHHhc--CCeEEEEecCCCCcccCccHHHHHHHHHcCCcEEecCCccHHHHHHHHcC----------CCCCCee
Confidence 35667778877 67889999997653 24578889999999766665554432211 0011222
Q ss_pred cCCCCCccccccccchHHHHHHHHHhhcc-ccceEEEcCchhhhHHHHHHHHhhcC-CceEEeCCCCCCCCCcchhhhhC
Q 011339 179 VPGLPDQIEMTKVREKWKDFGEMVLAADM-KSYGIIINTFEELELEYVKECKKTKG-GKVWCLGPVSLCNKQDIDKAERG 256 (488)
Q Consensus 179 ~p~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~s~~~le~~~~~~~~~~~~-~~~~~vGpl~~~~~~~~~~~~~~ 256 (488)
+-|+.+ ..-......+..... ....+++.+-..+. ..+......++ .+-.+|+-=+.+.-+.
T Consensus 134 F~GFLP--------~k~~~R~~~l~~l~~~~~t~IfyEsphRl~-~tL~d~~~~~g~~r~v~vaRELTK~~Ee------- 197 (275)
T COG0313 134 FEGFLP--------RKSKERRKRLEALANEPRTLIFYESPHRLL-ATLEDIVEVLGSDREVVVARELTKLFEE------- 197 (275)
T ss_pred EeccCC--------CCccHHHHHHHHHHhcCCeEEEEecchhHH-HHHHHHHHHcCCCceEEEEeecccchhh-------
Confidence 222211 111222222222222 33356666655554 34445556666 5556665322332111
Q ss_pred CCCcccchhhhcccCCC-CCCeEEEEeeCCcc
Q 011339 257 KKAAVDISECLNWLDSW-PPNSVVYVCLGSIC 287 (488)
Q Consensus 257 ~~~~~~~~~~~~~l~~~-~~~~vV~vs~Gs~~ 287 (488)
..+..-.++.+|+.+. ..+..|+|=.|...
T Consensus 198 -~~~g~~~e~~~~~~~~~~KGE~vlvv~~~~~ 228 (275)
T COG0313 198 -IYRGTLSELIEWLEEDTLKGEFVLVVEGKNK 228 (275)
T ss_pred -eecccHHHHHHHhhhcCCcccEEEEEeCCcc
Confidence 1111346777888775 55567777666443
No 370
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=33.35 E-value=80 Score=30.38 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
+|-+|.|..=|+-|-..-...||..|+++|++|.++-..
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D 41 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCD 41 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 444556666678899999999999999999999999443
No 371
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=33.32 E-value=11 Score=33.08 Aligned_cols=117 Identities=12% Similarity=0.189 Sum_probs=56.0
Q ss_pred ccCHHHHHHHHHHH-HHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccc--cCC---CCCCc------cc
Q 011339 20 QGHMIPMIDTARLL-AQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQE--AGV---PEGCE------NF 87 (488)
Q Consensus 20 ~GHv~p~l~LA~~L-~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~l---~~~~~------~~ 87 (488)
.+.+.-.+.+|++| .+.|.+|.+.-+. +...+++.. ++..+.++....+ ..+ ..... ..
T Consensus 16 ~~~~e~~v~~a~~~~~~~g~dViIsRG~-ta~~lr~~~--------~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~ 86 (176)
T PF06506_consen 16 EASLEEAVEEARQLLESEGADVIISRGG-TAELLRKHV--------SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYP 86 (176)
T ss_dssp E--HHHHHHHHHHHHTTTT-SEEEEEHH-HHHHHHCC---------SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEES
T ss_pred EecHHHHHHHHHHhhHhcCCeEEEECCH-HHHHHHHhC--------CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecc
Confidence 35677788899999 7889998777553 444444431 4556666544333 000 00000 00
Q ss_pred cCCCchhhHHHHHHHH---------HHhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEEecch
Q 011339 88 DMLHSTDLVSNFFKSL---------RLLQLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISFHGFS 151 (488)
Q Consensus 88 ~~~~~~~~~~~~~~~~---------~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~~ 151 (488)
........+..++..- ..+...+.++. . ...|+||.+.. +..+|+.+|+|++.+.++.
T Consensus 87 ~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~-~--~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 87 NIIPGLESIEELLGVDIKIYPYDSEEEIEAAIKQAK-A--EGVDVIVGGGV---VCRLARKLGLPGVLIESGE 153 (176)
T ss_dssp S-SCCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHH-H--TT--EEEESHH---HHHHHHHTTSEEEESS--H
T ss_pred cccHHHHHHHHHhCCceEEEEECCHHHHHHHHHHHH-H--cCCcEEECCHH---HHHHHHHcCCcEEEEEecH
Confidence 1111122222222110 12223333333 3 48999999964 6789999999998876543
No 372
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=33.31 E-value=3.7e+02 Score=28.28 Aligned_cols=31 Identities=13% Similarity=0.324 Sum_probs=24.2
Q ss_pred HHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEE
Q 011339 112 NLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISF 147 (488)
Q Consensus 112 ~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~ 147 (488)
+.+++ .+||++|.... ...+|+++|||++..
T Consensus 392 ~~l~~--~~~Dllig~s~---~~~~A~k~gIP~ld~ 422 (513)
T TIGR01861 392 EAMEM--LKPDIILTGKR---PGEVSKKMRVPYLNA 422 (513)
T ss_pred HHHHh--cCCCEEEecCc---cchhHhhcCCCEEEc
Confidence 44566 69999998865 346899999999763
No 373
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=33.23 E-value=3e+02 Score=24.84 Aligned_cols=36 Identities=25% Similarity=0.227 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEE
Q 011339 108 LPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRIS 146 (488)
Q Consensus 108 ~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~ 146 (488)
+.++..++. .-+++|+-.+.......|+..|+|++.
T Consensus 71 ~~a~~a~~a---GA~FivsP~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 71 EQLRQAVDA---GAQFIVSPGLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred HHHHHHHHc---CCCEEECCCCCHHHHHHHHHcCCcEEC
Confidence 334444444 888898888877888888888988765
No 374
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=33.07 E-value=72 Score=30.00 Aligned_cols=37 Identities=8% Similarity=0.047 Sum_probs=31.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
|+|++..=|+-|-..-.+.||..|+++|++|.++=..
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D 37 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCD 37 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 5688886688899999999999999999999988433
No 375
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=32.96 E-value=69 Score=32.83 Aligned_cols=37 Identities=22% Similarity=0.366 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcch
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANA 49 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~ 49 (488)
.++||+++..+-.| +++|+.|+++|++|++.-.....
T Consensus 6 ~~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 6 QGKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred cCCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCCCc
Confidence 57899999999988 99999999999999999765443
No 376
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=32.72 E-value=1.8e+02 Score=24.09 Aligned_cols=45 Identities=11% Similarity=0.045 Sum_probs=36.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHH
Q 011339 11 HFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTV 55 (488)
Q Consensus 11 kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (488)
||++-+..+.+|-.----++..|...|++|.........+.+.+.
T Consensus 1 ~vvigtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~a 45 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDA 45 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 588889999999999999999999999999998776444444333
No 377
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=32.66 E-value=77 Score=29.42 Aligned_cols=38 Identities=18% Similarity=0.125 Sum_probs=26.5
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTT 45 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~ 45 (488)
..++|+++...-.--..-+-.....|+++||+|+++|-
T Consensus 9 ~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~l 46 (237)
T COG2120 9 DPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCL 46 (237)
T ss_pred cCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEc
Confidence 55777666654444445566677778999999999854
No 378
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=32.53 E-value=1e+02 Score=24.89 Aligned_cols=37 Identities=16% Similarity=0.139 Sum_probs=33.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCc
Q 011339 11 HFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPA 47 (488)
Q Consensus 11 kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (488)
||++..-++.|-......+++.|+++|.+|.++....
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 5888889999999999999999999999999887764
No 379
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=32.52 E-value=1.2e+02 Score=31.69 Aligned_cols=47 Identities=9% Similarity=0.055 Sum_probs=37.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHH
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVV 56 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~ 56 (488)
--+++...|+.|-..-+..++.+.+++|..|.|++.+...+.+.+..
T Consensus 274 ~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~ 320 (509)
T PRK09302 274 SIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNA 320 (509)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHH
Confidence 34566777899999999999999999999999999986666655443
No 380
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=32.51 E-value=2.5e+02 Score=28.77 Aligned_cols=34 Identities=12% Similarity=0.033 Sum_probs=25.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCc
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPA 47 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (488)
|.|||++..+.. .+.+++++++.|++|..+.+..
T Consensus 2 ~k~iLi~g~g~~-----a~~i~~aa~~~G~~vv~~~~~~ 35 (451)
T PRK08591 2 FDKILIANRGEI-----ALRIIRACKELGIKTVAVHSTA 35 (451)
T ss_pred cceEEEECCCHH-----HHHHHHHHHHcCCeEEEEcChh
Confidence 467888855433 4888889999999999886653
No 381
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=32.29 E-value=61 Score=32.97 Aligned_cols=33 Identities=15% Similarity=0.080 Sum_probs=26.5
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTT 45 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~ 45 (488)
+++||.|+..+-.| +.+|..|+++||+|+.+-.
T Consensus 2 ~~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~ 34 (415)
T PRK11064 2 SFETISVIGLGYIG-----LPTAAAFASRQKQVIGVDI 34 (415)
T ss_pred CccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeC
Confidence 46789998766555 5789999999999998854
No 382
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=32.06 E-value=2.2e+02 Score=29.03 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=25.7
Q ss_pred EEEEc-CCCccCHHHHHHHHHHHHHCCCeEEEE
Q 011339 12 FVLFP-FLAQGHMIPMIDTARLLAQHGAAITIV 43 (488)
Q Consensus 12 vl~~~-~~~~GHv~p~l~LA~~L~~rGH~Vt~~ 43 (488)
|++.. ..+.|-..-++.|.++|++||++|.=+
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 44443 458899999999999999999999744
No 383
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=31.99 E-value=70 Score=33.93 Aligned_cols=95 Identities=20% Similarity=0.223 Sum_probs=49.0
Q ss_pred chhhhhccCCcccccccCC-ch-hHHHHhhcCCCEeecCccc-ccchhHH--HHHHHhcceEEecccCCCCCCccccccc
Q 011339 347 PQVLILSHPSIGGFLTHCS-WN-SSLEGISAGVPLITWPLYG-DQFWNEK--LIVQVLNIGVRIGVEVPLDFGEEEEIGV 421 (488)
Q Consensus 347 pq~~ll~~~~~~~~IthgG-~g-s~~eal~~GvP~v~~P~~~-DQ~~na~--rv~e~~G~G~~l~~~~~~~~~~~~~~~~ 421 (488)
++.+++.-|++.+|-+-=- || |-+||++.|||.|..-+.+ -+..+-. .- +..|+-+.-...
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~-~~~GV~VvdR~~------------- 527 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDP-EEYGVYVVDRRD------------- 527 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HH-GGGTEEEE-SSS-------------
T ss_pred CHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccC-cCCcEEEEeCCC-------------
Confidence 4566666666644443211 32 8899999999999988754 1111111 12 245655544443
Q ss_pred ccCHHHHHHHHHHHH----c-cCcchHHHHHHHHHHHHHH
Q 011339 422 LVKKEDVVKAINILM----D-EGGETDDRRKRAREFQIMA 456 (488)
Q Consensus 422 ~~~~~~l~~ai~~~l----~-~~~~~~~~~~~a~~l~~~~ 456 (488)
.+.++..+.+.+.| . +.+++...|+++.++++.+
T Consensus 528 -~n~~e~v~~la~~l~~f~~~~~rqri~~Rn~ae~LS~~~ 566 (633)
T PF05693_consen 528 -KNYDESVNQLADFLYKFCQLSRRQRIIQRNRAERLSDLA 566 (633)
T ss_dssp -S-HHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHGGGG
T ss_pred -CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 55666555555544 2 3334446777787777653
No 384
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=31.98 E-value=98 Score=28.47 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=27.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCCCe
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHGAA 39 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~ 39 (488)
|+=|+|...|+.|--.....|.++|+++||.
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K 31 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTK 31 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhccc
Confidence 4557888899999999999999999999976
No 385
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=31.88 E-value=69 Score=28.41 Aligned_cols=32 Identities=19% Similarity=0.218 Sum_probs=21.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
|||.++.. ||+ -+.+|-.|++.||+|+.+-..
T Consensus 1 M~I~ViGl---Gyv--Gl~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVIGL---GYV--GLPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp -EEEEE-----STT--HHHHHHHHHHTTSEEEEE-S-
T ss_pred CEEEEECC---Ccc--hHHHHHHHHhCCCEEEEEeCC
Confidence 67887744 444 378899999999999998543
No 386
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=31.74 E-value=57 Score=29.99 Aligned_cols=32 Identities=16% Similarity=0.267 Sum_probs=24.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
|+++++..+-.| ..||+.|.++||+|+.+-..
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhCCCceEEEEcC
Confidence 466776666544 68999999999999998554
No 387
>PRK12744 short chain dehydrogenase; Provisional
Probab=31.56 E-value=2.3e+02 Score=26.05 Aligned_cols=32 Identities=28% Similarity=0.081 Sum_probs=21.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 011339 11 HFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTT 45 (488)
Q Consensus 11 kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~ 45 (488)
|.++++..+.| =-..+|+.|+++|++|.+++.
T Consensus 9 k~vlItGa~~g---IG~~~a~~l~~~G~~vv~i~~ 40 (257)
T PRK12744 9 KVVLIAGGAKN---LGGLIARDLAAQGAKAVAIHY 40 (257)
T ss_pred cEEEEECCCch---HHHHHHHHHHHCCCcEEEEec
Confidence 45555543332 345689999999999776653
No 388
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=31.19 E-value=1.2e+02 Score=28.28 Aligned_cols=49 Identities=12% Similarity=0.062 Sum_probs=41.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHh
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVAR 58 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~ 58 (488)
--+++...|+.|...-.++++.+.+++|..|.|+++....+.+.+...+
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~ 72 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARS 72 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHH
Confidence 3467888899999999999999999999999999998777776665543
No 389
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=31.02 E-value=3.8e+02 Score=23.80 Aligned_cols=43 Identities=19% Similarity=0.204 Sum_probs=35.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCc-chhhhHH
Q 011339 12 FVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPA-NAARFKT 54 (488)
Q Consensus 12 vl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~-~~~~~~~ 54 (488)
+.++..|+.|-..-.+.++..+.++|..|.|+.++. ..+++.+
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~ 58 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQ 58 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHH
Confidence 466777899999999999999999999999999975 3444443
No 390
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=31.00 E-value=57 Score=28.74 Aligned_cols=41 Identities=17% Similarity=0.121 Sum_probs=30.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhh
Q 011339 11 HFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARF 52 (488)
Q Consensus 11 kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 52 (488)
||++...++. ...-...+.++|.++|++|.++.++.-...+
T Consensus 2 ~I~lgvtGs~-~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi 42 (177)
T TIGR02113 2 KILLAVTGSI-AAYKAADLTSQLTKLGYDVTVLMTQAATQFI 42 (177)
T ss_pred EEEEEEcCHH-HHHHHHHHHHHHHHCCCEEEEEEChHHHhhc
Confidence 4665555544 4556679999999999999999988544443
No 391
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=30.90 E-value=70 Score=28.03 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCCCeEEEEcCCCcc--hHHHHHhcCCCcEEE
Q 011339 108 LPLENLLKELTPKPSCIVSDTCYPW--TVDTAARFNIPRISF 147 (488)
Q Consensus 108 ~~l~~~l~~~~~~pD~vv~D~~~~~--~~~~a~~lgiP~v~~ 147 (488)
..++.+++- +||+||....... .....+..|||++.+
T Consensus 60 ~n~E~ll~l---~PDlii~~~~~~~~~~~~~l~~~gIpvv~i 98 (186)
T cd01141 60 LNVELIVAL---KPDLVILYGGFQAQTILDKLEQLGIPVLYV 98 (186)
T ss_pred CCHHHHhcc---CCCEEEEecCCCchhHHHHHHHcCCCEEEe
Confidence 445666655 9999998654432 444567889998876
No 392
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=30.88 E-value=58 Score=28.20 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=27.5
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcc
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPAN 48 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~ 48 (488)
+..+|+++-++++||. -|.-|++-|++|++..-+..
T Consensus 3 ~~k~IAViGyGsQG~a-----~AlNLrDSG~~V~Vglr~~s 38 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHA-----HALNLRDSGVNVIVGLREGS 38 (165)
T ss_dssp CTSEEEEES-SHHHHH-----HHHHHHHCC-EEEEEE-TTC
T ss_pred CCCEEEEECCChHHHH-----HHHHHHhCCCCEEEEecCCC
Confidence 3568999999999985 57889999999999877644
No 393
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=30.87 E-value=1e+02 Score=25.85 Aligned_cols=34 Identities=15% Similarity=0.046 Sum_probs=29.5
Q ss_pred EEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 13 VLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 13 l~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
.++..+..--++|..-++...+++|++|++..+-
T Consensus 7 IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~Tf 40 (137)
T COG2210 7 IILASGTLDKAYAALIIASGAAAMGYEVTVFFTF 40 (137)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeH
Confidence 4555678889999999999999999999998884
No 394
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=30.73 E-value=84 Score=29.58 Aligned_cols=37 Identities=8% Similarity=0.071 Sum_probs=29.8
Q ss_pred CEE-EEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 10 PHF-VLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 10 ~kv-l~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
+|| .+..=|+-|-..-...||..|+++|++|.++=..
T Consensus 2 ~~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~D 39 (270)
T PRK13185 2 ALVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCD 39 (270)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 344 4444579999999999999999999999998443
No 395
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=30.49 E-value=4.9e+02 Score=26.77 Aligned_cols=34 Identities=9% Similarity=0.040 Sum_probs=27.2
Q ss_pred EEEEcC-CCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 011339 12 FVLFPF-LAQGHMIPMIDTARLLAQHGAAITIVTT 45 (488)
Q Consensus 12 vl~~~~-~~~GHv~p~l~LA~~L~~rGH~Vt~~~~ 45 (488)
|++... ..-|-..-+..|++.|+++|++|..+-+
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~ 36 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKV 36 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEcc
Confidence 455543 3578888999999999999999998854
No 396
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=30.45 E-value=2.2e+02 Score=29.40 Aligned_cols=42 Identities=14% Similarity=0.123 Sum_probs=34.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhH
Q 011339 12 FVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFK 53 (488)
Q Consensus 12 vl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 53 (488)
+++...|+.|--.=++.++..++++|+.|.|++.+...+.+.
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~ 138 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIK 138 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHH
Confidence 466667899999999999999999999999999875554443
No 397
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=30.44 E-value=1.1e+02 Score=30.38 Aligned_cols=100 Identities=12% Similarity=0.134 Sum_probs=54.2
Q ss_pred eEEEEeeCCccCCChHHHHHHHHHHhcCCCCeEEEEeCCCCCchhhhhhhhhH-HHHHH-hcCCCeEEe-cc--------
Q 011339 277 SVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEE-KFEER-VKGRGILIL-GW-------- 345 (488)
Q Consensus 277 ~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~p~-~~~~~-~~~~nv~~~-~~-------- 345 (488)
.+++.+.||.....|. .++++.+++.++.+.|...... -...+ +|. ++.-. .....+.-. .|
T Consensus 3 ~i~~~~GGTGGHi~Pa--la~a~~l~~~g~~v~~vg~~~~-~e~~l----~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 75 (352)
T PRK12446 3 KIVFTGGGSAGHVTPN--LAIIPYLKEDNWDISYIGSHQG-IEKTI----IEKENIPYYSISSGKLRRYFDLKNIKDPFL 75 (352)
T ss_pred eEEEEcCCcHHHHHHH--HHHHHHHHhCCCEEEEEECCCc-ccccc----CcccCCcEEEEeccCcCCCchHHHHHHHHH
Confidence 3777888888875553 3456777777889888865443 11111 221 11000 000000000 00
Q ss_pred -----cchhhhhccCCcccccccCCchh---HHHHhhcCCCEeecC
Q 011339 346 -----APQVLILSHPSIGGFLTHCSWNS---SLEGISAGVPLITWP 383 (488)
Q Consensus 346 -----~pq~~ll~~~~~~~~IthgG~gs---~~eal~~GvP~v~~P 383 (488)
.--..++++-+-+++|++||+=| +..|...|+|.++.=
T Consensus 76 ~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e 121 (352)
T PRK12446 76 VMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHE 121 (352)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEEC
Confidence 00112354333334999999986 889999999997743
No 398
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=30.42 E-value=61 Score=23.26 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=17.0
Q ss_pred HHHHHHHHHCCCeEEEEeCC
Q 011339 27 IDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 27 l~LA~~L~~rGH~Vt~~~~~ 46 (488)
+..|..|+++|++|+++-..
T Consensus 9 l~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCcEEEEecC
Confidence 67799999999999999554
No 399
>PLN00016 RNA-binding protein; Provisional
Probab=30.34 E-value=60 Score=32.39 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=25.7
Q ss_pred CCCEEEEEcC--CCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 8 QQPHFVLFPF--LAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 8 ~~~kvl~~~~--~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
.++||+++.. |+.|.+ -..|+++|.++||+|+.++-.
T Consensus 51 ~~~~VLVt~~~~GatG~i--G~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFI--GFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred ccceEEEEeccCCCceeE--hHHHHHHHHHCCCEEEEEecC
Confidence 3467887722 333333 356789999999999988764
No 400
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=30.32 E-value=1e+02 Score=27.34 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=30.1
Q ss_pred CEEEEEcCC-Ccc-CHHHHHHHHHHHHHC---CCeEEEEeCCc
Q 011339 10 PHFVLFPFL-AQG-HMIPMIDTARLLAQH---GAAITIVTTPA 47 (488)
Q Consensus 10 ~kvl~~~~~-~~G-Hv~p~l~LA~~L~~r---GH~Vt~~~~~~ 47 (488)
||||++.|- ..| .+||....+++|-.+ |++|...--|.
T Consensus 1 ~kvLvTGFePF~~~~~NPs~e~vk~L~~~~i~g~~V~~~~lP~ 43 (207)
T COG2039 1 MKVLVTGFEPFGGEPINPSWEAVKELNGRIIGGAEVKGRILPV 43 (207)
T ss_pred CeEEEEeccCCCCCCCChHHHHHHhcCcccccCceEEEEEcCc
Confidence 578888873 333 589999999999987 89998876664
No 401
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.02 E-value=80 Score=33.37 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=30.0
Q ss_pred CCCEEEEEc-------CCCccCHHHHHH---HHHHHHHCCCeEEEEeCCcc
Q 011339 8 QQPHFVLFP-------FLAQGHMIPMID---TARLLAQHGAAITIVTTPAN 48 (488)
Q Consensus 8 ~~~kvl~~~-------~~~~GHv~p~l~---LA~~L~~rGH~Vt~~~~~~~ 48 (488)
.|.|+++++ .+-.||+.++++ +|+-++-+||+|.|+|..+-
T Consensus 3 ~~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDe 53 (558)
T COG0143 3 MMKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDE 53 (558)
T ss_pred CCCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 346677776 357799997664 46777778999999988543
No 402
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=30.01 E-value=86 Score=30.17 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=38.2
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEee
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQ 72 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 72 (488)
+..+|+++.++++||.. |.-|++-|.+|.+..-+...+ ++++.+ .||+..++.
T Consensus 17 kgK~iaIIGYGsQG~ah-----alNLRDSGlnViiGlr~g~~s-~~kA~~------dGf~V~~v~ 69 (338)
T COG0059 17 KGKKVAIIGYGSQGHAQ-----ALNLRDSGLNVIIGLRKGSSS-WKKAKE------DGFKVYTVE 69 (338)
T ss_pred cCCeEEEEecChHHHHH-----HhhhhhcCCcEEEEecCCchh-HHHHHh------cCCEeecHH
Confidence 44689999999999976 567899999999987764443 333321 277776653
No 403
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=30.00 E-value=3.7e+02 Score=26.28 Aligned_cols=101 Identities=21% Similarity=0.346 Sum_probs=58.6
Q ss_pred CCEEEEEcCCCcc-----CHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCC
Q 011339 9 QPHFVLFPFLAQG-----HMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEG 83 (488)
Q Consensus 9 ~~kvl~~~~~~~G-----Hv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~ 83 (488)
+..|+|.+..+.| -..-+..|++.|.++|.+|.++.++...+..+ .+.+. ...... + ..
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~-~i~~~----~~~~~~-l---------~~- 238 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAE-EIAKG----LPNAVI-L---------AG- 238 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHH-HHHHh----cCCccc-c---------CC-
Confidence 3566776662332 23358899999999998888888774333333 32221 010000 0 00
Q ss_pred CccccCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEEecch
Q 011339 84 CENFDMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISFHGFS 151 (488)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~~ 151 (488)
.....++..+++ .-|++|+-- .+...+|..+|.|+|.++..+
T Consensus 239 --------------------k~sL~e~~~li~----~a~l~I~~D--Sg~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 239 --------------------KTSLEELAALIA----GADLVIGND--SGPMHLAAALGTPTIALYGPT 280 (334)
T ss_pred --------------------CCCHHHHHHHHh----cCCEEEccC--ChHHHHHHHcCCCEEEEECCC
Confidence 011334444543 468887542 357789999999999987553
No 404
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=29.86 E-value=1.9e+02 Score=27.92 Aligned_cols=34 Identities=9% Similarity=0.158 Sum_probs=26.4
Q ss_pred hhhccCCcccccccCCchhHHHHhhcCCCEeecC
Q 011339 350 LILSHPSIGGFLTHCSWNSSLEGISAGVPLITWP 383 (488)
Q Consensus 350 ~ll~~~~~~~~IthgG~gs~~eal~~GvP~v~~P 383 (488)
.++..-.-+++|+.++..+..-|-..|+|.|.+-
T Consensus 87 ~~l~~~~pDlVi~d~~~~~~~aA~~~~iP~i~i~ 120 (321)
T TIGR00661 87 NIIREYNPDLIISDFEYSTVVAAKLLKIPVICIS 120 (321)
T ss_pred HHHHhcCCCEEEECCchHHHHHHHhcCCCEEEEe
Confidence 3444344444999999999999999999999664
No 405
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.86 E-value=2.6e+02 Score=25.28 Aligned_cols=35 Identities=17% Similarity=0.047 Sum_probs=24.4
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
++++|+++. +.|++ -..|++.|.++||+|+.++..
T Consensus 5 ~~~~vlItG--asg~i--G~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 5 MGRVALVTG--AARGL--GRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCCEEEEeC--CCchH--HHHHHHHHHHCCCeEEEEeCC
Confidence 566777643 45554 367889999999998775554
No 406
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=29.75 E-value=83 Score=30.54 Aligned_cols=37 Identities=3% Similarity=-0.189 Sum_probs=28.0
Q ss_pred CEEEEEcCC---CccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 10 PHFVLFPFL---AQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 10 ~kvl~~~~~---~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
|||+|+.-| -.-+..-+..|.++.++|||+|.++.+.
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~ 40 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPG 40 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehh
Confidence 577777643 2233445889999999999999999886
No 407
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=29.74 E-value=5.2e+02 Score=24.98 Aligned_cols=100 Identities=16% Similarity=0.187 Sum_probs=57.2
Q ss_pred CEEEEEcCCCcc---C--HHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCC
Q 011339 10 PHFVLFPFLAQG---H--MIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGC 84 (488)
Q Consensus 10 ~kvl~~~~~~~G---H--v~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~ 84 (488)
.-|++.+..+.| + .--+..|++.|.++|++|.++.++...+......... +-..+. +..
T Consensus 175 ~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~-----~~~~~~---------l~g-- 238 (334)
T TIGR02195 175 PIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALL-----PGELRN---------LAG-- 238 (334)
T ss_pred CEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhC-----Cccccc---------CCC--
Confidence 345555544333 1 2248899999998899998888775544332221110 000000 000
Q ss_pred ccccCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEEecc
Q 011339 85 ENFDMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISFHGF 150 (488)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~ 150 (488)
.....++..+++. -|++|+-- .+...+|..+|+|.+.++..
T Consensus 239 -------------------~~sL~el~ali~~----a~l~I~~D--SGp~HlAaA~~~P~i~lfG~ 279 (334)
T TIGR02195 239 -------------------ETSLDEAVDLIAL----AKAVVTND--SGLMHVAAALNRPLVALYGS 279 (334)
T ss_pred -------------------CCCHHHHHHHHHh----CCEEEeeC--CHHHHHHHHcCCCEEEEECC
Confidence 0013345555544 58888653 35778999999999998664
No 408
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=29.69 E-value=57 Score=31.56 Aligned_cols=33 Identities=12% Similarity=0.062 Sum_probs=26.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
++||+|+..+..| ..+|..|+++||+|+++...
T Consensus 2 ~~~V~VIG~G~mG-----~~iA~~la~~G~~V~v~d~~ 34 (308)
T PRK06129 2 MGSVAIIGAGLIG-----RAWAIVFARAGHEVRLWDAD 34 (308)
T ss_pred CcEEEEECccHHH-----HHHHHHHHHCCCeeEEEeCC
Confidence 5689988877555 46888999999999998654
No 409
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=29.68 E-value=5.2e+02 Score=27.29 Aligned_cols=29 Identities=10% Similarity=0.048 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCcchHHHHHhcCCCcEEEecc
Q 011339 119 PKPSCIVSDTCYPWTVDTAARFNIPRISFHGF 150 (488)
Q Consensus 119 ~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~~~ 150 (488)
...++||+|.. +..+|+.+|++.+.+.+.
T Consensus 144 ~G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 144 RGIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred CCCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 58999999964 678999999999987654
No 410
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=29.55 E-value=70 Score=32.43 Aligned_cols=31 Identities=26% Similarity=0.246 Sum_probs=25.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTT 45 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~ 45 (488)
|||.|+..|..| +.+|..|+++||+|+++..
T Consensus 1 mkI~vIGlG~~G-----~~lA~~La~~G~~V~~~d~ 31 (411)
T TIGR03026 1 MKIAVIGLGYVG-----LPLAALLADLGHEVTGVDI 31 (411)
T ss_pred CEEEEECCCchh-----HHHHHHHHhcCCeEEEEEC
Confidence 578888776666 6889999999999998854
No 411
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=29.21 E-value=1.1e+02 Score=27.39 Aligned_cols=39 Identities=15% Similarity=0.173 Sum_probs=30.4
Q ss_pred CCCEEEEEcC--CCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 8 QQPHFVLFPF--LAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 8 ~~~kvl~~~~--~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
+.+|++.++. ++-|-..-...||..|+++|++|.++-..
T Consensus 15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3467666654 46777778899999999999999998554
No 412
>PRK03094 hypothetical protein; Provisional
Probab=28.93 E-value=51 Score=24.76 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=17.2
Q ss_pred HHHHHHHHHHCCCeEEEEeCC
Q 011339 26 MIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 26 ~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
+..|.+.|+++||+|.=+..+
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~~ 30 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRSE 30 (80)
T ss_pred cHHHHHHHHHCCCEEEecCcc
Confidence 457899999999999877554
No 413
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=28.84 E-value=1.1e+02 Score=30.43 Aligned_cols=88 Identities=18% Similarity=0.271 Sum_probs=54.7
Q ss_pred CChHHHHHHHHHHhcCCCCeEEEEeCCCCCchhhhhhhhhH-HHH--HHhcCC--CeEEecccch---hhhhccCCcccc
Q 011339 289 LTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEE-KFE--ERVKGR--GILILGWAPQ---VLILSHPSIGGF 360 (488)
Q Consensus 289 ~~~~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~p~-~~~--~~~~~~--nv~~~~~~pq---~~ll~~~~~~~~ 360 (488)
.....+..++++++..+..+...+..+. ....+..+ ++. ... .....+ .+.+.+|+|| +.+|-.|++ -
T Consensus 192 Ye~~~l~~ll~~~~~~~~pv~llvp~g~-~~~~~~~~-~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~--N 267 (374)
T PF10093_consen 192 YENAALASLLDAWAASPKPVHLLVPEGR-ALNSLAAW-LGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDF--N 267 (374)
T ss_pred CCchHHHHHHHHHhcCCCCeEEEecCCc-cHHHHHHH-hccccccCccccccCCeEEEECCCCCHHHHHHHHHhCcc--c
Confidence 3445577888888888887776666554 33333222 210 000 001122 4556789997 459989998 4
Q ss_pred cccCCchhHHHHhhcCCCEee
Q 011339 361 LTHCSWNSSLEGISAGVPLIT 381 (488)
Q Consensus 361 IthgG~gs~~eal~~GvP~v~ 381 (488)
+=. |-=|...|.-+|+|+|=
T Consensus 268 fVR-GEDSfVRAqwAgkPFvW 287 (374)
T PF10093_consen 268 FVR-GEDSFVRAQWAGKPFVW 287 (374)
T ss_pred eEe-cchHHHHHHHhCCCceE
Confidence 444 55699999999999973
No 414
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=28.72 E-value=1.4e+02 Score=25.93 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEE
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIV 43 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~ 43 (488)
+..+|++++.++ -.--=-+.+|+.|+++|++|+++
T Consensus 24 ~~~~v~il~G~G-nNGgDgl~~AR~L~~~G~~V~v~ 58 (169)
T PF03853_consen 24 KGPRVLILCGPG-NNGGDGLVAARHLANRGYNVTVY 58 (169)
T ss_dssp TT-EEEEEE-SS-HHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCeEEEEECCC-CChHHHHHHHHHHHHCCCeEEEE
Confidence 567888888764 11122788999999999999994
No 415
>PRK13604 luxD acyl transferase; Provisional
Probab=28.66 E-value=1.2e+02 Score=29.51 Aligned_cols=37 Identities=14% Similarity=0.094 Sum_probs=30.5
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEe
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVT 44 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~ 44 (488)
++-++++++.+..++-.-+..+|+.|+++|+.|.-+=
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 3456788888888887779999999999999988763
No 416
>PRK06703 flavodoxin; Provisional
Probab=28.65 E-value=1e+02 Score=26.01 Aligned_cols=38 Identities=5% Similarity=-0.021 Sum_probs=28.7
Q ss_pred CCEEEEEcCCCccCHHHHH-HHHHHHHHCCCeEEEEeCC
Q 011339 9 QPHFVLFPFLAQGHMIPMI-DTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l-~LA~~L~~rGH~Vt~~~~~ 46 (488)
|||++++=...+|+..-+. .|++.|...|++|.+.-..
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~ 39 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMD 39 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehh
Confidence 5778777777888887754 5678888889999886543
No 417
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=28.63 E-value=5.1e+02 Score=24.54 Aligned_cols=41 Identities=12% Similarity=0.130 Sum_probs=35.2
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcc
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPAN 48 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~ 48 (488)
+.-+++|+..++.|-..-+..|+..+..+|+.|.+++...+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ 114 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 114 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 34688999889999988888999999999999999988654
No 418
>PRK08939 primosomal protein DnaI; Reviewed
Probab=28.59 E-value=84 Score=30.46 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=35.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhh
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARF 52 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 52 (488)
..++++..++.|-..=+.++|++|+++|+.|+|+..+.....+
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l 199 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL 199 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH
Confidence 4578888889999999999999999999999999887444443
No 419
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=28.52 E-value=86 Score=26.97 Aligned_cols=34 Identities=21% Similarity=0.145 Sum_probs=26.3
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
+..||+++..+.-| ...++.|.+.||+|+++.+.
T Consensus 12 ~~~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcCc
Confidence 45678888665433 77899999999999999654
No 420
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=28.51 E-value=85 Score=21.60 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCC
Q 011339 426 EDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETRSSSLMIKLLIQDIMQQP 481 (488)
Q Consensus 426 ~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~~~ 481 (488)
++|...|..+|. .+..+-..++..+-.-+++=|+..+.++.-|.+++.+-
T Consensus 2 ~elt~~v~~lL~------qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl~~qa 51 (54)
T PF06825_consen 2 QELTAFVQNLLQ------QMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADLMTQA 51 (54)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-------
T ss_pred hHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 567888888886 77778888888777777777766666777777776553
No 421
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=28.32 E-value=1.2e+02 Score=28.06 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=38.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhh
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARF 52 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 52 (488)
|.+|++..=++.|--.-...++.+|++.||+|..+.-.+..+.-
T Consensus 1 mr~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDST 44 (278)
T COG1348 1 MRQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADST 44 (278)
T ss_pred CceEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchH
Confidence 45799999999999999999999999999999999776665543
No 422
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=28.28 E-value=4.4e+02 Score=23.70 Aligned_cols=150 Identities=15% Similarity=0.085 Sum_probs=72.8
Q ss_pred CCeEEEEeeCCccCCChHHHHHHHHHHhcCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEEecccchhhhhcc
Q 011339 275 PNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSH 354 (488)
Q Consensus 275 ~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ll~~ 354 (488)
.++++.|..|.... .-+..+...+..+.+. .... .+++. ......++....--.+...+..
T Consensus 9 gk~vlVvGgG~va~-------rk~~~Ll~~ga~VtVv-sp~~--~~~l~---------~l~~~~~i~~~~~~~~~~dl~~ 69 (205)
T TIGR01470 9 GRAVLVVGGGDVAL-------RKARLLLKAGAQLRVI-AEEL--ESELT---------LLAEQGGITWLARCFDADILEG 69 (205)
T ss_pred CCeEEEECcCHHHH-------HHHHHHHHCCCEEEEE-cCCC--CHHHH---------HHHHcCCEEEEeCCCCHHHhCC
Confidence 44578787775542 1223444556665544 3332 11221 1122345544322223445666
Q ss_pred CCcccccccCCchhHH-----HHhhcCCCEee--cCcccccchhHHHHHHHhcceEEecccCCCCCCcccccccccCHHH
Q 011339 355 PSIGGFLTHCSWNSSL-----EGISAGVPLIT--WPLYGDQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKED 427 (488)
Q Consensus 355 ~~~~~~IthgG~gs~~-----eal~~GvP~v~--~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~ 427 (488)
+++ +|..-|...+. +|-..|+|+-+ -|-..| +..-..+ ++-++-+.+.+. ++++.+ ...
T Consensus 70 ~~l--Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~-~~g~l~iaisT~---------G~sP~l-a~~ 135 (205)
T TIGR01470 70 AFL--VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIV-DRSPVVVAISSG---------GAAPVL-ARL 135 (205)
T ss_pred cEE--EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEE-EcCCEEEEEECC---------CCCcHH-HHH
Confidence 666 88887776444 34457888833 333333 2233333 233344444332 112222 355
Q ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHHH
Q 011339 428 VVKAINILMDEGGETDDRRKRAREFQIMAKRA 459 (488)
Q Consensus 428 l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~ 459 (488)
|++.|.+++.+ ....+-+...++++.+++.
T Consensus 136 lr~~ie~~l~~--~~~~~~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 136 LRERIETLLPP--SLGDLATLAATWRDAVKKR 165 (205)
T ss_pred HHHHHHHhcch--hHHHHHHHHHHHHHHHHhh
Confidence 77777777742 1235666666666666544
No 423
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=28.26 E-value=1.3e+02 Score=24.43 Aligned_cols=39 Identities=15% Similarity=0.077 Sum_probs=29.0
Q ss_pred CCEEEEEcCCCccCHHHHH---HHHHHHHHCCCeEEEEeCCc
Q 011339 9 QPHFVLFPFLAQGHMIPMI---DTARLLAQHGAAITIVTTPA 47 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l---~LA~~L~~rGH~Vt~~~~~~ 47 (488)
+||+++++....|-...++ .|.++-.++||+|.+=+...
T Consensus 2 ~mkivaVtacp~GiAht~lAAeaL~kAA~~~G~~i~VE~qg~ 43 (114)
T PRK10427 2 MAYLVAVTACVSGVAHTYMAAERLEKLCQLEKWGVKIETQGA 43 (114)
T ss_pred CceEEEEeeCCCcHHHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4789988888777777765 45666667899999866553
No 424
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=28.17 E-value=2.4e+02 Score=23.66 Aligned_cols=39 Identities=23% Similarity=0.156 Sum_probs=30.1
Q ss_pred CCeEEEEeeCCccCCChHHHHHHHHHHhcCCCCeEEEEeC
Q 011339 275 PNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRG 314 (488)
Q Consensus 275 ~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~v~~~~~ 314 (488)
.+.+|++++||-.....+.++++++.+. .+.++++....
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~~ 88 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNPH 88 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEECC
Confidence 3458999999999888888888888875 35777776543
No 425
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=28.05 E-value=3.8e+02 Score=26.81 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEE
Q 011339 108 LPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISF 147 (488)
Q Consensus 108 ~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~ 147 (488)
.++.+.+++ .+||+++.+.. ...+++.+++|++..
T Consensus 331 ~~~~~~l~~--~~pdl~ig~~~---~~~~a~~~~~~~~~~ 365 (398)
T PF00148_consen 331 EEIEELLEE--LKPDLLIGSSH---ERYLAKKLGIPLIRI 365 (398)
T ss_dssp HHHHHHHHH--HT-SEEEESHH---HHHHHHHTT--EEE-
T ss_pred HHHHHHHHh--cCCCEEEechh---hHHHHHHhCCCeEEE
Confidence 456667777 69999999954 677888998888774
No 426
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=27.59 E-value=3.7e+02 Score=22.54 Aligned_cols=25 Identities=12% Similarity=0.094 Sum_probs=20.3
Q ss_pred ccccCCch------hHHHHhhcCCCEeecCc
Q 011339 360 FLTHCSWN------SSLEGISAGVPLITWPL 384 (488)
Q Consensus 360 ~IthgG~g------s~~eal~~GvP~v~~P~ 384 (488)
+++|+|-| .+.+|...++|+|++.-
T Consensus 63 ~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 63 VLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 88886643 67789999999999964
No 427
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=27.52 E-value=88 Score=32.27 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=28.4
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
+..||+|+..+..| +-.+|+.|+++|++|+..-..
T Consensus 6 ~~~~v~viG~G~sG----~s~~a~~L~~~G~~V~~~D~~ 40 (461)
T PRK00421 6 RIKRIHFVGIGGIG----MSGLAEVLLNLGYKVSGSDLK 40 (461)
T ss_pred CCCEEEEEEEchhh----HHHHHHHHHhCCCeEEEECCC
Confidence 56789999998877 444899999999999887543
No 428
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=27.50 E-value=1.2e+02 Score=26.23 Aligned_cols=38 Identities=13% Similarity=0.168 Sum_probs=31.5
Q ss_pred CCEE-EEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 9 QPHF-VLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 9 ~~kv-l~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
||+| .|+.+-..|-..=+-.|.+.|.++|+.|..+-..
T Consensus 1 m~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~ 39 (161)
T COG1763 1 MMKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHA 39 (161)
T ss_pred CCcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEec
Confidence 4555 6777778998888999999999999999998554
No 429
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=27.47 E-value=1.2e+02 Score=28.33 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=28.7
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 011339 11 HFVLFPF-LAQGHMIPMIDTARLLAQHGAAITIVTT 45 (488)
Q Consensus 11 kvl~~~~-~~~GHv~p~l~LA~~L~~rGH~Vt~~~~ 45 (488)
.|++... |+-|-..=+..||..|++.|+.|..+--
T Consensus 3 ~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~ 38 (243)
T PF06564_consen 3 VIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDL 38 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 3444443 7999999999999999999999998844
No 430
>PRK06835 DNA replication protein DnaC; Validated
Probab=27.47 E-value=96 Score=30.44 Aligned_cols=41 Identities=12% Similarity=0.130 Sum_probs=34.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchh
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAA 50 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 50 (488)
..++|+..++.|-..=+.++|++|.++|+.|.|++.+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~ 224 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIE 224 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHH
Confidence 56888888899988888999999999999999998874433
No 431
>PRK10037 cell division protein; Provisional
Probab=27.32 E-value=1.1e+02 Score=28.59 Aligned_cols=37 Identities=14% Similarity=0.012 Sum_probs=29.9
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHHCCCeEEEEeCCc
Q 011339 11 HFVLFPF-LAQGHMIPMIDTARLLAQHGAAITIVTTPA 47 (488)
Q Consensus 11 kvl~~~~-~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (488)
.|++... |+-|-..-...||..|+++|++|.++=..+
T Consensus 3 ~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~ 40 (250)
T PRK10037 3 ILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACP 40 (250)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 3455554 788999999999999999999999995543
No 432
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=27.30 E-value=3.8e+02 Score=22.59 Aligned_cols=98 Identities=12% Similarity=0.101 Sum_probs=59.8
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCc
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQH--GAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGVPEGCE 85 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 85 (488)
.+|+|++.. ...+=.-++.+++.|.+. ||++ ++++.....+++. .|+....+- .-+.+
T Consensus 3 ~~~~v~lsv--~d~dK~~l~~~a~~l~~ll~Gf~l--~AT~gTa~~L~~~--------~Gi~v~~vi------~~~~g-- 62 (142)
T PRK05234 3 ARKRIALIA--HDHKKDDLVAWVKAHKDLLEQHEL--YATGTTGGLIQEA--------TGLDVTRLL------SGPLG-- 62 (142)
T ss_pred cCcEEEEEE--eccchHHHHHHHHHHHHHhcCCEE--EEeChHHHHHHhc--------cCCeeEEEE------cCCCC--
Confidence 567777766 455667799999999999 9995 3455444444332 144433321 00110
Q ss_pred cccCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcC--CCc--------chHHHHHhcCCCcEEE
Q 011339 86 NFDMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDT--CYP--------WTVDTAARFNIPRISF 147 (488)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~--~~~--------~~~~~a~~lgiP~v~~ 147 (488)
-...+.+++++ .+.|+||... ... .-..+|-..+||+++.
T Consensus 63 --------------------g~~~i~~~I~~--g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~ 112 (142)
T PRK05234 63 --------------------GDQQIGALIAE--GKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATN 112 (142)
T ss_pred --------------------CchhHHHHHHc--CceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcC
Confidence 02345666777 7999999843 322 2344688889999873
No 433
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=27.10 E-value=78 Score=29.77 Aligned_cols=38 Identities=18% Similarity=0.304 Sum_probs=28.0
Q ss_pred CEEEEEcCC---CccCHHHHHHHHHHHHHCCCeEEEEeCCc
Q 011339 10 PHFVLFPFL---AQGHMIPMIDTARLLAQHGAAITIVTTPA 47 (488)
Q Consensus 10 ~kvl~~~~~---~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (488)
+|..|++.+ +.|-=.-..+|++.|..||+.|+.+-..+
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DP 41 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDP 41 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeecc
Confidence 578888854 67777889999999999999999986543
No 434
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=27.02 E-value=2.2e+02 Score=28.16 Aligned_cols=87 Identities=21% Similarity=0.284 Sum_probs=48.9
Q ss_pred CChHHHHHHHH-HHhcC-CCCeEEEEeCCCCCchhhhhhhhhHHHHHHhcCCCeEEecccchhh---hhccCCccccccc
Q 011339 289 LTSSQMIELGL-GLEAS-KKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVL---ILSHPSIGGFLTH 363 (488)
Q Consensus 289 ~~~~~~~~~~~-a~~~~-~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~---ll~~~~~~~~Ith 363 (488)
...+++.+++- .+++. +.+|+..-.+.. .-++ .+.+++-.....+.+.+-+|++. +|.+.++ |++-
T Consensus 208 KGiDll~~iIp~vc~~~p~vrfii~GDGPk--~i~l-----ee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~I--Flnt 278 (426)
T KOG1111|consen 208 KGIDLLLEIIPSVCDKHPEVRFIIIGDGPK--RIDL-----EEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDI--FLNT 278 (426)
T ss_pred cchHHHHHHHHHHHhcCCCeeEEEecCCcc--cchH-----HHHHHHhhccCceEEecccchHHHHHHHhcCcE--Eecc
Confidence 34556655543 34433 346665444433 1122 22222223356777778888754 6777777 7765
Q ss_pred CCc----hhHHHHhhcCCCEeecCc
Q 011339 364 CSW----NSSLEGISAGVPLITWPL 384 (488)
Q Consensus 364 gG~----gs~~eal~~GvP~v~~P~ 384 (488)
.=. =++.||.++|.|+|..=.
T Consensus 279 SlTEafc~~ivEAaScGL~VVsTrV 303 (426)
T KOG1111|consen 279 SLTEAFCMVIVEAASCGLPVVSTRV 303 (426)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeec
Confidence 331 256799999999986543
No 435
>PLN02929 NADH kinase
Probab=26.90 E-value=77 Score=30.58 Aligned_cols=65 Identities=9% Similarity=0.066 Sum_probs=41.0
Q ss_pred cCCcccccccCCchhHHHHhh---cCCCEeecCccc------ccchhHHHHHHHhcceEEecccCCCCCCcccccccccC
Q 011339 354 HPSIGGFLTHCSWNSSLEGIS---AGVPLITWPLYG------DQFWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVK 424 (488)
Q Consensus 354 ~~~~~~~IthgG~gs~~eal~---~GvP~v~~P~~~------DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~ 424 (488)
.+++ +|+-||-||++.+.+ .++|++.+=... .++.|.-.. ..-+|--. .++
T Consensus 64 ~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~--~r~lGfL~----------------~~~ 123 (301)
T PLN02929 64 DVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDA--RRSTGHLC----------------AAT 123 (301)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCccccccccccccccc--ccCccccc----------------cCC
Confidence 3455 999999999999855 468888876532 122222110 11233222 267
Q ss_pred HHHHHHHHHHHHcc
Q 011339 425 KEDVVKAINILMDE 438 (488)
Q Consensus 425 ~~~l~~ai~~~l~~ 438 (488)
.+++.+++.+++++
T Consensus 124 ~~~~~~~L~~il~g 137 (301)
T PLN02929 124 AEDFEQVLDDVLFG 137 (301)
T ss_pred HHHHHHHHHHHHcC
Confidence 88999999999875
No 436
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=26.85 E-value=1.1e+02 Score=29.59 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=32.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHH
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTV 55 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (488)
|||+++..|+.|= -+|-.|++.||+|+++.-+...+.+++.
T Consensus 1 mkI~IlGaGAvG~-----l~g~~L~~~g~~V~~~~R~~~~~~l~~~ 41 (307)
T COG1893 1 MKILILGAGAIGS-----LLGARLAKAGHDVTLLVRSRRLEALKKK 41 (307)
T ss_pred CeEEEECCcHHHH-----HHHHHHHhCCCeEEEEecHHHHHHHHhC
Confidence 6899999998884 4688999999999999887655555543
No 437
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=26.66 E-value=1.4e+02 Score=27.37 Aligned_cols=37 Identities=11% Similarity=0.017 Sum_probs=26.3
Q ss_pred CEEEEEcCC----CccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 10 PHFVLFPFL----AQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 10 ~kvl~~~~~----~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
.||+++..+ ......=++.--..|.+.|++|+++++.
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~ 42 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPD 42 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCC
Confidence 478777641 1224445677788999999999999975
No 438
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=26.65 E-value=6.3e+02 Score=24.88 Aligned_cols=33 Identities=12% Similarity=0.151 Sum_probs=21.3
Q ss_pred EEEEeeCCccCCChHHHHHHHHHHhcCCCCeEEEEeCCC
Q 011339 278 VVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGN 316 (488)
Q Consensus 278 vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~v~~~~~~~ 316 (488)
++.|..+.+.+ ..+++.+.+.+..++.+.+...
T Consensus 179 ~lqIgAr~~~N------~~LL~~va~~~kPViLk~G~~~ 211 (335)
T PRK08673 179 ILQIGARNMQN------FDLLKEVGKTNKPVLLKRGMSA 211 (335)
T ss_pred eEEECcccccC------HHHHHHHHcCCCcEEEeCCCCC
Confidence 55565554444 3456666677888888887664
No 439
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=26.62 E-value=69 Score=29.20 Aligned_cols=31 Identities=26% Similarity=0.185 Sum_probs=23.5
Q ss_pred CEEEEEc-CCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 011339 10 PHFVLFP-FLAQGHMIPMIDTARLLAQHGAAITIVTT 45 (488)
Q Consensus 10 ~kvl~~~-~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~ 45 (488)
|||.|+. .+..| ..||+.|+++||+|+++..
T Consensus 1 MkI~IIGG~G~mG-----~ala~~L~~~G~~V~v~~r 32 (219)
T TIGR01915 1 MKIAVLGGTGDQG-----KGLALRLAKAGNKIIIGSR 32 (219)
T ss_pred CEEEEEcCCCHHH-----HHHHHHHHhCCCEEEEEEc
Confidence 5788874 45444 4789999999999998754
No 440
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=26.58 E-value=75 Score=30.73 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=27.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
.|||+++..|+-|=+ +|-.|++.||+|+++.-.
T Consensus 2 ~m~I~IiGaGaiG~~-----~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSL-----WACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHH-----HHHHHHhCCCCeEEEEec
Confidence 578999999998865 466688899999999874
No 441
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=26.56 E-value=71 Score=31.14 Aligned_cols=32 Identities=9% Similarity=0.042 Sum_probs=26.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
|||.++..++.| ..+|..|++.||+|+++...
T Consensus 1 MkI~IiGaGa~G-----~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 1 MKISILGAGSFG-----TAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred CEEEEECcCHHH-----HHHHHHHHHCCCeEEEEecC
Confidence 578888888776 46889999999999988763
No 442
>COG1422 Predicted membrane protein [Function unknown]
Probab=26.41 E-value=2e+02 Score=25.81 Aligned_cols=80 Identities=20% Similarity=0.178 Sum_probs=52.0
Q ss_pred hHHHHhhcCCCEeecCcccccchh-HHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHHccCcchHHHH
Q 011339 368 SSLEGISAGVPLITWPLYGDQFWN-EKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRR 446 (488)
Q Consensus 368 s~~eal~~GvP~v~~P~~~DQ~~n-a~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~ 446 (488)
|+.++++-+.-.+..|+..=++.. .-.+. ...-..+..-+++.+-|.++-++++
T Consensus 24 ~~~~~i~~~ln~~f~P~i~~~~p~lvilV~-------------------------avi~gl~~~i~~~~liD~ekm~~~q 78 (201)
T COG1422 24 SIRDGIGGALNVVFGPLLSPLPPHLVILVA-------------------------AVITGLYITILQKLLIDQEKMKELQ 78 (201)
T ss_pred HHHHHHHHHHHHHHhhhccccccHHHHHHH-------------------------HHHHHHHHHHHHHHhccHHHHHHHH
Confidence 666666666666666665433332 22222 1333445556777788887777999
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHH
Q 011339 447 KRAREFQIMAKRATEETRSSSLMIKLLI 474 (488)
Q Consensus 447 ~~a~~l~~~~~~~~~~gg~~~~~~~~~i 474 (488)
+.+++++++.++|-++|. ..+++++=
T Consensus 79 k~m~efq~e~~eA~~~~d--~~~lkkLq 104 (201)
T COG1422 79 KMMKEFQKEFREAQESGD--MKKLKKLQ 104 (201)
T ss_pred HHHHHHHHHHHHHHHhCC--HHHHHHHH
Confidence 999999999999977776 34555553
No 443
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=26.31 E-value=3.7e+02 Score=24.47 Aligned_cols=68 Identities=15% Similarity=0.149 Sum_probs=41.8
Q ss_pred CCCCEE-EEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCc---chhhhHHHHHhhhcCCCCeEEEEeeCC
Q 011339 7 CQQPHF-VLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPA---NAARFKTVVARAMQSGLPLQLIEIQFP 74 (488)
Q Consensus 7 ~~~~kv-l~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~ 74 (488)
+.+++| +|+..|..-.=.-++.+|+.|++.+..|-++.... +.+.+...+...-..+.+-+.+.+|..
T Consensus 105 ~~~~riVvFvGSpi~e~ekeLv~~akrlkk~~Vaidii~FGE~~~~~e~l~~fida~N~~~~gshlv~Vppg 176 (259)
T KOG2884|consen 105 NQKQRIVVFVGSPIEESEKELVKLAKRLKKNKVAIDIINFGEAENNTEKLFEFIDALNGKGDGSHLVSVPPG 176 (259)
T ss_pred CcceEEEEEecCcchhhHHHHHHHHHHHHhcCeeEEEEEeccccccHHHHHHHHHHhcCCCCCceEEEeCCC
Confidence 345666 67777766555689999999999998877765432 223344444333222445567777543
No 444
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=26.30 E-value=1.3e+02 Score=30.39 Aligned_cols=42 Identities=12% Similarity=0.269 Sum_probs=30.6
Q ss_pred HHhhHHHHHHHHhcCCCCeEEEEcCCCcch----------HHHHHhcCCCcEEE
Q 011339 104 RLLQLPLENLLKELTPKPSCIVSDTCYPWT----------VDTAARFNIPRISF 147 (488)
Q Consensus 104 ~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~----------~~~a~~lgiP~v~~ 147 (488)
+...+.+.+.++. .+||++|+-+.+.++ ..+.+.++||.++-
T Consensus 62 eea~~~i~~mv~k--~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~ 113 (431)
T TIGR01918 62 EEAVARVLEMLKD--KEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTS 113 (431)
T ss_pred HHHHHHHHHHHHh--cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 3445677888888 899999999865432 22456799998874
No 445
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=26.24 E-value=1.3e+02 Score=30.41 Aligned_cols=42 Identities=7% Similarity=0.167 Sum_probs=30.7
Q ss_pred HHhhHHHHHHHHhcCCCCeEEEEcCCCcch----------HHHHHhcCCCcEEE
Q 011339 104 RLLQLPLENLLKELTPKPSCIVSDTCYPWT----------VDTAARFNIPRISF 147 (488)
Q Consensus 104 ~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~----------~~~a~~lgiP~v~~ 147 (488)
+...+.+.+.++. .+||++|+-+.+.++ ..+.+.++||.++-
T Consensus 62 eea~~~i~~mv~k--~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vta 113 (431)
T TIGR01917 62 EEAKAKVLEMIKG--ANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTA 113 (431)
T ss_pred HHHHHHHHHHHHh--cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 4445777888888 899999999865432 22456799998874
No 446
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=26.23 E-value=1.5e+02 Score=24.35 Aligned_cols=36 Identities=11% Similarity=0.161 Sum_probs=25.2
Q ss_pred CEE-EEEcCCCccCHHH--HHHHHHHHHHCC-CeEEEEeC
Q 011339 10 PHF-VLFPFLAQGHMIP--MIDTARLLAQHG-AAITIVTT 45 (488)
Q Consensus 10 ~kv-l~~~~~~~GHv~p--~l~LA~~L~~rG-H~Vt~~~~ 45 (488)
||+ ++++.|.||+-+- .+.+|++|.+.| |+|.++--
T Consensus 1 m~~~Ivvt~ppYg~q~a~~A~~fA~all~~gh~~v~iFly 40 (126)
T COG1553 1 MKYTIVVTGPPYGTESAFSALRFAEALLEQGHELVRLFLY 40 (126)
T ss_pred CeEEEEEecCCCccHHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 345 5667789997666 566799999997 55555533
No 447
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=26.22 E-value=3.8e+02 Score=27.16 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCc
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPA 47 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (488)
..|++++.-+ .-.+++++.|.+.|-+|..+.++.
T Consensus 274 Gkrv~i~gd~-----~~~~~l~~~L~elGm~~v~~~t~~ 307 (407)
T TIGR01279 274 GKKIFFFGDN-----LLELPLARFLKRCGMEVVECGTPY 307 (407)
T ss_pred CCEEEEECCc-----hHHHHHHHHHHHCCCEEEEecCCC
Confidence 4566665432 445667777777788877776653
No 448
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=26.15 E-value=81 Score=28.65 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=24.9
Q ss_pred HHHHHHhcCCCCeEEEEcCCCcc-------hHHHHHhcCCCcEEE
Q 011339 110 LENLLKELTPKPSCIVSDTCYPW-------TVDTAARFNIPRISF 147 (488)
Q Consensus 110 l~~~l~~~~~~pD~vv~D~~~~~-------~~~~a~~lgiP~v~~ 147 (488)
+.+.++.....||+|+.|..-.. |..+.-.+++|+|-+
T Consensus 83 l~~~~~~l~~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGV 127 (208)
T cd06559 83 LLEALEKLKTKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGV 127 (208)
T ss_pred HHHHHHhCCCCCCEEEEeCCccccCCCcchhheeeeecCCCEEEE
Confidence 55566664457999999987542 334444556887775
No 449
>PTZ00445 p36-lilke protein; Provisional
Probab=26.11 E-value=5.1e+02 Score=23.67 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=24.6
Q ss_pred cCHHH-HHHHHHHHHHCCCeEEEEeCCcchh
Q 011339 21 GHMIP-MIDTARLLAQHGAAITIVTTPANAA 50 (488)
Q Consensus 21 GHv~p-~l~LA~~L~~rGH~Vt~~~~~~~~~ 50 (488)
+|+.| +..+.++|.+.|-.|+++|..+.+.
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~ 104 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDKEL 104 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccchhh
Confidence 45566 7889999999999999999876644
No 450
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=26.11 E-value=1.8e+02 Score=26.39 Aligned_cols=89 Identities=13% Similarity=0.168 Sum_probs=57.1
Q ss_pred cchhhhhccCCcccccccCCchhH---------------HHHhhcCCCEeecCccc----ccc---hhHHHHHHHhcceE
Q 011339 346 APQVLILSHPSIGGFLTHCSWNSS---------------LEGISAGVPLITWPLYG----DQF---WNEKLIVQVLNIGV 403 (488)
Q Consensus 346 ~pq~~ll~~~~~~~~IthgG~gs~---------------~eal~~GvP~v~~P~~~----DQ~---~na~rv~e~~G~G~ 403 (488)
+++.++...+++ ++|.=+..||+ .++..+++|++++|... +.+ .|-+++ ++.|+=+
T Consensus 88 ~~HI~La~wAD~-~vVaPaTaNtlaKiA~GiaDnlltt~l~a~~~~~Pv~iaPaMN~~Mw~~Pat~~nl~~L-~~~G~~v 165 (209)
T PLN02496 88 VLHIELRRWADV-MVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYSKPLFVAPAMNTFMWNNPFTERHLMSI-DELGISL 165 (209)
T ss_pred cchhHhhhhhCE-EEEEeCCHHHHHHHHcccCCcHHHHHHHHcCCCCCEEEEeCCCHHHHhCHHHHHHHHHH-HHCCCEE
Confidence 346666666665 45555555533 34444589999999633 222 256677 5777765
Q ss_pred EecccCCCCCCcccccccccCHHHHHHHHHHHHc
Q 011339 404 RIGVEVPLDFGEEEEIGVLVKKEDVVKAINILMD 437 (488)
Q Consensus 404 ~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l~ 437 (488)
.-.....+.-|.. ++++-.++++|.+.|.+.+.
T Consensus 166 i~P~~g~lAcg~~-G~Grm~ep~~I~~~i~~~l~ 198 (209)
T PLN02496 166 IPPVTKRLACGDY-GNGAMAEPSLIYSTVRLFLE 198 (209)
T ss_pred ECCCcCcccCCCc-CCCCCCCHHHHHHHHHHHHh
Confidence 5444444444444 66788999999999988875
No 451
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.06 E-value=1.7e+02 Score=20.01 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=17.8
Q ss_pred HhcCCchHHHHHHHHHHHHcCCCCCC
Q 011339 460 TEETRSSSLMIKLLIQDIMQQPHGDD 485 (488)
Q Consensus 460 ~~~gg~~~~~~~~~i~~~~~~~~~~~ 485 (488)
+.+|=|+-.+|.-..+.|.+.+.+++
T Consensus 24 MaeGmSsGEAIa~VA~elRe~hk~~~ 49 (60)
T COG3140 24 MAEGMSSGEAIALVAQELRENHKGEN 49 (60)
T ss_pred HHccccchhHHHHHHHHHHHHhcccc
Confidence 45566777788777777777665544
No 452
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=25.97 E-value=1.5e+02 Score=26.19 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCCCeEEEEcC--CCcchHHHHHhcCCCcEEE
Q 011339 109 PLENLLKELTPKPSCIVSDT--CYPWTVDTAARFNIPRISF 147 (488)
Q Consensus 109 ~l~~~l~~~~~~pD~vv~D~--~~~~~~~~a~~lgiP~v~~ 147 (488)
.+.+.++. .++|.|++=. -...|..+|..+|+|++..
T Consensus 44 ~~~~~~~~--~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 44 ELAERYKD--DGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred HHHHHhcc--cCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 66677777 6899998544 2447888999999999985
No 453
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=25.81 E-value=73 Score=30.26 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=16.8
Q ss_pred HHHHHHHHCCCeEEEEeCC
Q 011339 28 DTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 28 ~LA~~L~~rGH~Vt~~~~~ 46 (488)
.+|..|++.||+|++++-.
T Consensus 5 ~~a~~L~~~G~~V~l~~r~ 23 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARG 23 (293)
T ss_pred HHHHHHHhCCCcEEEEecH
Confidence 4788999999999999875
No 454
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=25.72 E-value=7.8e+02 Score=25.68 Aligned_cols=111 Identities=11% Similarity=0.029 Sum_probs=70.5
Q ss_pred eEEecccchhh---hhccCCcccccc--cCCchhHH-HHhhcCC----CEeecCcccccchhHHHHHHHhcceEEecccC
Q 011339 340 ILILGWAPQVL---ILSHPSIGGFLT--HCSWNSSL-EGISAGV----PLITWPLYGDQFWNEKLIVQVLNIGVRIGVEV 409 (488)
Q Consensus 340 v~~~~~~pq~~---ll~~~~~~~~It--hgG~gs~~-eal~~Gv----P~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~ 409 (488)
+++.+.+|+.+ ++..+++ ++|| .-|+|-+. |.++++. |+|.--+. -|. +.+.-++.+++
T Consensus 364 ~~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefa-----Gaa---~~l~~AllVNP-- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFA-----GAA---VELKGALLTNP-- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEeccc-----cch---hhcCCCEEECC--
Confidence 45667777655 5567776 2333 45888554 9999877 44443332 121 24445777765
Q ss_pred CCCCCcccccccccCHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCC
Q 011339 410 PLDFGEEEEIGVLVKKEDVVKAINILMDEGGETDDRRKRAREFQIMAKRATEETRSSSLMIKLLIQDIMQQP 481 (488)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~~~ 481 (488)
.+.++++++|.+.|+.+. ++-++|.+++.+.++. -++..=.+.++.++..+-
T Consensus 433 -------------~d~~~~A~ai~~AL~m~~--~Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~~~~ 484 (487)
T TIGR02398 433 -------------YDPVRMDETIYVALAMPK--AEQQARMREMFDAVNY-----YDVQRWADEFLAAVSPQA 484 (487)
T ss_pred -------------CCHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhhcc
Confidence 699999999999999762 2455566666665542 345566777888776654
No 455
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=25.66 E-value=1.8e+02 Score=26.86 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=33.4
Q ss_pred EEEEcC-CCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhh
Q 011339 12 FVLFPF-LAQGHMIPMIDTARLLAQHGAAITIVTTPANAAR 51 (488)
Q Consensus 12 vl~~~~-~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~ 51 (488)
|.|.+. |+-|-.--.+.||.+|+++|-.|+++-..++.+.
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl 44 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPL 44 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcH
Confidence 344444 7999999999999999999999999988777664
No 456
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=25.61 E-value=3.7e+02 Score=25.20 Aligned_cols=100 Identities=20% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCcccc-----CCCCCCccccCCCchhhHHHHHHH
Q 011339 28 DTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEA-----GVPEGCENFDMLHSTDLVSNFFKS 102 (488)
Q Consensus 28 ~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~ 102 (488)
.+++.+.+.|-+|.+.+...+...|....... .+-+..+|.+.... +++....-....+.
T Consensus 119 ea~~~~~~~~~rVflt~G~~~l~~f~~~~~~~-----~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPf---------- 183 (257)
T COG2099 119 EAAEAAKQLGRRVFLTTGRQNLAHFVAADAHS-----HVLARVLPPPDVLAKCEDLGVPPARIIAMRGPF---------- 183 (257)
T ss_pred HHHHHHhccCCcEEEecCccchHHHhcCcccc-----eEEEEEcCchHHHHHHHhcCCChhhEEEecCCc----------
Q ss_pred HHHhhHHHHHHHHhcCCCCeEEEEcCCCcch-----HHHHHhcCCCcEEE
Q 011339 103 LRLLQLPLENLLKELTPKPSCIVSDTCYPWT-----VDTAARFNIPRISF 147 (488)
Q Consensus 103 ~~~~~~~l~~~l~~~~~~pD~vv~D~~~~~~-----~~~a~~lgiP~v~~ 147 (488)
..+.=..++++ ++.|+||+=..--.+ ..+|+.+|||++.+
T Consensus 184 ---s~~~n~all~q--~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I 228 (257)
T COG2099 184 ---SEEDNKALLEQ--YRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMI 228 (257)
T ss_pred ---ChHHHHHHHHH--hCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEE
No 457
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=25.60 E-value=1.1e+02 Score=27.46 Aligned_cols=32 Identities=16% Similarity=0.191 Sum_probs=25.4
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEe
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVT 44 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~ 44 (488)
+.++|++..++..| ..+|+.|.+.||+|+++.
T Consensus 27 ~gk~v~I~G~G~vG-----~~~A~~L~~~G~~Vvv~D 58 (200)
T cd01075 27 EGKTVAVQGLGKVG-----YKLAEHLLEEGAKLIVAD 58 (200)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHHCCCEEEEEc
Confidence 56789888876444 678999999999999553
No 458
>CHL00175 minD septum-site determining protein; Validated
Probab=25.54 E-value=1.3e+02 Score=28.47 Aligned_cols=39 Identities=8% Similarity=0.166 Sum_probs=32.0
Q ss_pred CCCEEEEEcC--CCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 8 QQPHFVLFPF--LAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 8 ~~~kvl~~~~--~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
+|+|++.+.. |+-|-..-...||..|+++|++|.++-..
T Consensus 13 ~~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D 53 (281)
T CHL00175 13 TMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDAD 53 (281)
T ss_pred CCceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 5667766665 68888888999999999999999988554
No 459
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=25.50 E-value=4.7e+02 Score=24.27 Aligned_cols=44 Identities=16% Similarity=0.232 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHCC-CeEEEEeCC--cchhhhHHHHHhhhcCCCCeEEEEe
Q 011339 23 MIPMIDTARLLAQHG-AAITIVTTP--ANAARFKTVVARAMQSGLPLQLIEI 71 (488)
Q Consensus 23 v~p~l~LA~~L~~rG-H~Vt~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i 71 (488)
+.|..++.++|+..| .+|.++|+- ...+.+.+.++.. ||+...+
T Consensus 105 tt~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~-----G~eV~~~ 151 (239)
T TIGR02990 105 VTPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVR-----GFEIVNF 151 (239)
T ss_pred eCHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhC-----CcEEeee
Confidence 467888888888888 556666652 1122233333332 6776655
No 460
>PRK08309 short chain dehydrogenase; Provisional
Probab=25.50 E-value=4.6e+02 Score=22.93 Aligned_cols=32 Identities=16% Similarity=0.320 Sum_probs=22.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
|+++++. ++ | +. ..+++.|+++|++|++++-.
T Consensus 1 m~vlVtG-Gt-G-~g--g~la~~L~~~G~~V~v~~R~ 32 (177)
T PRK08309 1 MHALVIG-GT-G-ML--KRVSLWLCEKGFHVSVIARR 32 (177)
T ss_pred CEEEEEC-cC-H-HH--HHHHHHHHHCcCEEEEEECC
Confidence 4555554 33 5 22 45999999999999988653
No 461
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=25.40 E-value=7.1e+02 Score=25.13 Aligned_cols=58 Identities=22% Similarity=0.172 Sum_probs=35.9
Q ss_pred CchhHHHHhhcCCCEee--cCccccc------chhHHHHHHHhcceEEecccCCCCCCcccccccccCHHHHHHHHHHHH
Q 011339 365 SWNSSLEGISAGVPLIT--WPLYGDQ------FWNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINILM 436 (488)
Q Consensus 365 G~gs~~eal~~GvP~v~--~P~~~DQ------~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~l 436 (488)
|+.++..++.+|.|+-. ++.++|. ..|+.++++.+-..+. ..+.+++..+|.+++
T Consensus 252 ~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vv-----------------vV~~~ei~aaI~~l~ 314 (457)
T KOG1250|consen 252 GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRVV-----------------VVEDDEIAAAILRLF 314 (457)
T ss_pred CcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceEE-----------------EeccHHHHHHHHHHH
Confidence 66788888888888631 2222331 2355555422222222 378899999999999
Q ss_pred ccC
Q 011339 437 DEG 439 (488)
Q Consensus 437 ~~~ 439 (488)
+|.
T Consensus 315 ede 317 (457)
T KOG1250|consen 315 EDE 317 (457)
T ss_pred Hhh
Confidence 876
No 462
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=25.39 E-value=3e+02 Score=26.33 Aligned_cols=113 Identities=15% Similarity=0.126 Sum_probs=0.0
Q ss_pred CCCCCCCCCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHHHHhhhcCCCCeEEEEeeCCccccCC
Q 011339 1 MASEGSCQQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGV 80 (488)
Q Consensus 1 m~~~~~~~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 80 (488)
+.... +++||+++..+. -..+.+|.++..+......+..--.+.+.+.....+. ++.++.++
T Consensus 83 l~~~~--~~~ri~vl~Sg~---gsnl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~-----gIp~~~~~-------- 144 (286)
T PRK06027 83 LLDSA--ERKRVVILVSKE---DHCLGDLLWRWRSGELPVEIAAVISNHDDLRSLVERF-----GIPFHHVP-------- 144 (286)
T ss_pred Ecccc--cCcEEEEEEcCC---CCCHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHh-----CCCEEEec--------
Q ss_pred CCCCccccCCCchhhHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCCCc-chHHHHHhcCCCcEEEecc
Q 011339 81 PEGCENFDMLHSTDLVSNFFKSLRLLQLPLENLLKELTPKPSCIVSDTCYP-WTVDTAARFNIPRISFHGF 150 (488)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~~~-~~~~~a~~lgiP~v~~~~~ 150 (488)
.-..........+.+++++ .+||+||.-.|.. ....+...+.-..+-+.++
T Consensus 145 -----------------~~~~~~~~~~~~~~~~l~~--~~~Dlivlagy~~il~~~~l~~~~~~iiNiHpS 196 (286)
T PRK06027 145 -----------------VTKETKAEAEARLLELIDE--YQPDLVVLARYMQILSPDFVARFPGRIINIHHS 196 (286)
T ss_pred -----------------cCccccchhHHHHHHHHHH--hCCCEEEEecchhhcCHHHHhhccCCceecCcc
No 463
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=25.39 E-value=1.8e+02 Score=23.34 Aligned_cols=39 Identities=15% Similarity=0.333 Sum_probs=30.8
Q ss_pred EEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhh
Q 011339 13 VLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAAR 51 (488)
Q Consensus 13 l~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~ 51 (488)
+++.+...|+-..++.+++.++++|..|..+|.....+.
T Consensus 56 ~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l 94 (131)
T PF01380_consen 56 LVIIISYSGETRELIELLRFAKERGAPVILITSNSESPL 94 (131)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHH
T ss_pred eeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCch
Confidence 344444788899999999999999999998887655443
No 464
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=25.29 E-value=4.1e+02 Score=27.05 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=20.7
Q ss_pred cccccCCch------hHHHHhhcCCCEeecC
Q 011339 359 GFLTHCSWN------SSLEGISAGVPLITWP 383 (488)
Q Consensus 359 ~~IthgG~g------s~~eal~~GvP~v~~P 383 (488)
++++|.|-| .+.+|...++|+|++-
T Consensus 66 v~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 96 (432)
T TIGR00173 66 AVVCTSGTAVANLLPAVIEASYSGVPLIVLT 96 (432)
T ss_pred EEEECCcchHhhhhHHHHHhcccCCcEEEEe
Confidence 388888855 6779999999999993
No 465
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=25.24 E-value=1.1e+02 Score=29.19 Aligned_cols=30 Identities=20% Similarity=0.430 Sum_probs=24.7
Q ss_pred cCCChHHHHHHHHHHhcCCCCeEEEEeCCC
Q 011339 287 CNLTSSQMIELGLGLEASKKPFIWVIRGGN 316 (488)
Q Consensus 287 ~~~~~~~~~~~~~a~~~~~~~~v~~~~~~~ 316 (488)
...+.+....+.+++.....+.||...++.
T Consensus 44 a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ 73 (282)
T cd07025 44 AGTDEERAADLNAAFADPEIKAIWCARGGY 73 (282)
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEcCCcC
Confidence 445567788899999999999999998876
No 466
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=25.12 E-value=1.3e+02 Score=28.90 Aligned_cols=28 Identities=21% Similarity=0.134 Sum_probs=22.1
Q ss_pred cCCcccccccCCchhHHHHhhc----CCCEeecC
Q 011339 354 HPSIGGFLTHCSWNSSLEGISA----GVPLITWP 383 (488)
Q Consensus 354 ~~~~~~~IthgG~gs~~eal~~----GvP~v~~P 383 (488)
.+++ +|+-||-||++++++. ++|++.+-
T Consensus 63 ~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn 94 (291)
T PRK02155 63 RADL--AVVLGGDGTMLGIGRQLAPYGVPLIGIN 94 (291)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEc
Confidence 4566 9999999999999774 56777654
No 467
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=24.77 E-value=5.8e+02 Score=26.10 Aligned_cols=42 Identities=12% Similarity=0.110 Sum_probs=33.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHH-HHCCCeEEEEeCCcchhh
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLL-AQHGAAITIVTTPANAAR 51 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L-~~rGH~Vt~~~~~~~~~~ 51 (488)
.-++|+..++-|-..-...||.++ ..+|+.|.+++...+...
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~a 266 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIA 266 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhh
Confidence 346777778999999999999876 678999999998865443
No 468
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=24.65 E-value=2.1e+02 Score=25.59 Aligned_cols=45 Identities=18% Similarity=0.045 Sum_probs=31.3
Q ss_pred hhHHHHHHHHhcCCCCeEEEEcCC--CcchHHHHHhcCC-CcEEEecc
Q 011339 106 LQLPLENLLKELTPKPSCIVSDTC--YPWTVDTAARFNI-PRISFHGF 150 (488)
Q Consensus 106 ~~~~l~~~l~~~~~~pD~vv~D~~--~~~~~~~a~~lgi-P~v~~~~~ 150 (488)
....+.+.+...+.+||+||+=+- ...|..++..||+ |..++...
T Consensus 15 ~~~~lA~kI~~s~~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~ 62 (192)
T COG2236 15 LCRALAEKIRASGFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVE 62 (192)
T ss_pred HHHHHHHHHHHcCCCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEE
Confidence 344555555555689999997763 4478999999998 66655433
No 469
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=24.63 E-value=88 Score=29.89 Aligned_cols=34 Identities=21% Similarity=0.090 Sum_probs=27.7
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
+..||.++..+..| ..+|..|+++||+|+++...
T Consensus 2 ~~~kIaViGaG~mG-----~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 2 DIKNVTVAGAGVLG-----SQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred CccEEEEECCCHHH-----HHHHHHHHhcCCeEEEEeCC
Confidence 34689999888777 56888999999999999654
No 470
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=24.62 E-value=65 Score=24.22 Aligned_cols=21 Identities=10% Similarity=0.210 Sum_probs=18.0
Q ss_pred HHHHHHHHHHCCCeEEEEeCC
Q 011339 26 MIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 26 ~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
+-.+.++|+++||+|+=+...
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~ 30 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENE 30 (80)
T ss_pred chHHHHHHHHCCCEEEecCCc
Confidence 567899999999999988765
No 471
>PRK07576 short chain dehydrogenase; Provisional
Probab=24.50 E-value=1.8e+02 Score=27.10 Aligned_cols=42 Identities=14% Similarity=0.234 Sum_probs=26.7
Q ss_pred CCCCCCCCCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 1 MASEGSCQQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 1 m~~~~~~~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
|..+|+++..+++++. +.|.+ -..++++|+++||+|..+.-.
T Consensus 1 ~~~~~~~~~k~ilItG--asggI--G~~la~~l~~~G~~V~~~~r~ 42 (264)
T PRK07576 1 MTTMFDFAGKNVVVVG--GTSGI--NLGIAQAFARAGANVAVASRS 42 (264)
T ss_pred CCccccCCCCEEEEEC--CCchH--HHHHHHHHHHCCCEEEEEeCC
Confidence 5555644444555543 34433 356889999999998887543
No 472
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=24.45 E-value=90 Score=24.69 Aligned_cols=29 Identities=14% Similarity=0.327 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCcchhhh
Q 011339 24 IPMIDTARLLAQHGAAITIVTTPANAARF 52 (488)
Q Consensus 24 ~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 52 (488)
.|.+.|+++|.++|.+|.+.=+-......
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~ 45 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEI 45 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHH
Confidence 68999999999999999988665444433
No 473
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=24.45 E-value=93 Score=31.73 Aligned_cols=36 Identities=25% Similarity=0.271 Sum_probs=29.4
Q ss_pred hHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEE
Q 011339 107 QLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISF 147 (488)
Q Consensus 107 ~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~ 147 (488)
..++.+++++ .+||++|.... ...+|+++|||+..+
T Consensus 358 ~~e~~~~i~~--~~pDliig~~~---~~~~a~k~giP~~~~ 393 (421)
T cd01976 358 HYELEEFVKR--LKPDLIGSGIK---EKYVFQKMGIPFRQM 393 (421)
T ss_pred HHHHHHHHHH--hCCCEEEecCc---chhhhhhcCCCeEeC
Confidence 4567778787 79999998865 666899999999875
No 474
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=24.31 E-value=1.6e+02 Score=25.44 Aligned_cols=29 Identities=7% Similarity=0.198 Sum_probs=21.6
Q ss_pred cCCcccccccCCc------hhHHHHhhcCCCEeecCc
Q 011339 354 HPSIGGFLTHCSW------NSSLEGISAGVPLITWPL 384 (488)
Q Consensus 354 ~~~~~~~IthgG~------gs~~eal~~GvP~v~~P~ 384 (488)
++.+ +++|.|- +++.+|...++|+|++.-
T Consensus 64 ~~~v--~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 64 RPGV--VIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp SEEE--EEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred cceE--EEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 3444 8888874 477889999999999875
No 475
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=24.20 E-value=3.1e+02 Score=22.90 Aligned_cols=55 Identities=11% Similarity=0.245 Sum_probs=37.1
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEE-EeCC-cchhhhHHHHHhhhcCCCCeEEEEeeCC
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITI-VTTP-ANAARFKTVVARAMQSGLPLQLIEIQFP 74 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 74 (488)
+.||+++.-.|+-..+|-+ ..+|.+.|..-.+ +|.+ .+...+++. ||....++|+
T Consensus 15 ~~MrFLIThnPtnaTln~f---ieELkKygvttvVRVCe~TYdt~~lek~---------GI~Vldw~f~ 71 (173)
T KOG2836|consen 15 KNMRFLITHNPTNATLNKF---IEELKKYGVTTVVRVCEPTYDTTPLEKE---------GITVLDWPFD 71 (173)
T ss_pred cceEEEEecCCCchhHHHH---HHHHHhcCCeEEEEecccccCCchhhhc---------CceEeecccc
Confidence 5699999999998887765 5799999977333 2333 222223332 8999888753
No 476
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=24.09 E-value=3.8e+02 Score=21.52 Aligned_cols=86 Identities=12% Similarity=0.129 Sum_probs=52.3
Q ss_pred cCHHHHHHHHHHHHHC--CCeEEEEeCCcchhhhHH-HHHhhhcCCCCeEEEEeeCCccccCCCCCCccccCCCchhhHH
Q 011339 21 GHMIPMIDTARLLAQH--GAAITIVTTPANAARFKT-VVARAMQSGLPLQLIEIQFPYQEAGVPEGCENFDMLHSTDLVS 97 (488)
Q Consensus 21 GHv~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~ 97 (488)
.+=.-++.+++.|.+. |+++. +++.....+++ . |+....+.. + +.+
T Consensus 9 ~dK~~~~~~a~~~~~ll~Gf~i~--AT~gTa~~L~~~~---------Gi~v~~vk~-----~-~~~-------------- 57 (115)
T cd01422 9 NKKEDLVEFVKQHQELLSRHRLV--ATGTTGLLIQEAT---------GLTVNRMKS-----G-PLG-------------- 57 (115)
T ss_pred cchHHHHHHHHHHHHHhcCCEEE--EechHHHHHHHhh---------CCcEEEEec-----C-CCC--------------
Confidence 3445688999999999 99973 44545555554 2 555443320 0 010
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCeEEEEcCC--Cc--------chHHHHHhcCCCcEEE
Q 011339 98 NFFKSLRLLQLPLENLLKELTPKPSCIVSDTC--YP--------WTVDTAARFNIPRISF 147 (488)
Q Consensus 98 ~~~~~~~~~~~~l~~~l~~~~~~pD~vv~D~~--~~--------~~~~~a~~lgiP~v~~ 147 (488)
-...+.+++++ .++|+||...- .. .-...|-..+||+++.
T Consensus 58 --------g~~~i~~~i~~--g~i~~VInt~~~~~~~~~~~dg~~iRr~a~~~~Ip~~Tt 107 (115)
T cd01422 58 --------GDQQIGALIAE--GEIDAVIFFRDPLTAQPHEPDVKALLRLCDVYNIPLATN 107 (115)
T ss_pred --------chhHHHHHHHc--CceeEEEEcCCCCCCCcccccHHHHHHHHHHcCCCEEEc
Confidence 02345666777 79999987653 11 1234588889999873
No 477
>TIGR03445 mycothiol_MshB 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase. Members of this protein family are 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase, the MshB protein of mycothiol biosynthesis in Mycobacterium tuberculosis and related species.
Probab=23.85 E-value=3.8e+02 Score=25.61 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=15.8
Q ss_pred hhHHHHHHHHhcCCCCeEEEE
Q 011339 106 LQLPLENLLKELTPKPSCIVS 126 (488)
Q Consensus 106 ~~~~l~~~l~~~~~~pD~vv~ 126 (488)
....+.+++++ .+||+||.
T Consensus 111 ~~~~l~~~Ir~--~~PdvViT 129 (284)
T TIGR03445 111 AAGALVAVIRE--VRPHVVVT 129 (284)
T ss_pred HHHHHHHHHHH--hCCcEEEe
Confidence 46778888888 89999986
No 478
>PRK08462 biotin carboxylase; Validated
Probab=23.84 E-value=4.3e+02 Score=27.01 Aligned_cols=36 Identities=8% Similarity=0.114 Sum_probs=26.8
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcc
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPAN 48 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~ 48 (488)
++-|||+...+.. .+.+++++++.|++|..+.+..+
T Consensus 3 ~~k~ili~~~g~~-----~~~~~~~~~~~G~~~v~~~~~~d 38 (445)
T PRK08462 3 EIKRILIANRGEI-----ALRAIRTIQEMGKEAIAIYSTAD 38 (445)
T ss_pred CCCEEEEECCcHH-----HHHHHHHHHHcCCCEEEEechhh
Confidence 5668888876544 56888888888999888866543
No 479
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=23.84 E-value=1.8e+02 Score=21.54 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=27.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEe
Q 011339 12 FVLFPFLAQGHMIPMIDTARLLAQHGAAITIVT 44 (488)
Q Consensus 12 vl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~ 44 (488)
+++...++.|--.-...||..|++.|++|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 456666788888889999999999999998775
No 480
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=23.81 E-value=1.5e+02 Score=24.13 Aligned_cols=34 Identities=24% Similarity=0.189 Sum_probs=27.3
Q ss_pred EEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 13 VLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 13 l~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
+++..+..+.-.-+..+++.|+++|+.|..+..+
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 35 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYP 35 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecC
Confidence 5566666677777999999999999998888554
No 481
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=23.78 E-value=1.6e+02 Score=30.35 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=32.5
Q ss_pred CEEEEEcCC---CccCHHHHHHHHHHHHHCCCeEEEEeCCcc
Q 011339 10 PHFVLFPFL---AQGHMIPMIDTARLLAQHGAAITIVTTPAN 48 (488)
Q Consensus 10 ~kvl~~~~~---~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~ 48 (488)
+|.+|++.+ +.|-=.-..+|++.|.+||+.||..-..++
T Consensus 1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPY 42 (533)
T COG0504 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPY 42 (533)
T ss_pred CeEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEecccc
Confidence 467888865 778888999999999999999999866543
No 482
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=23.73 E-value=1.8e+02 Score=26.94 Aligned_cols=41 Identities=10% Similarity=0.041 Sum_probs=34.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCC-CeEEEEeCCcchh
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHG-AAITIVTTPANAA 50 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rG-H~Vt~~~~~~~~~ 50 (488)
|||++..=++.|-..-...|+++|.++| ++|..+-..++..
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~n 42 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSN 42 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCC
Confidence 6899999999999988888899999886 9999997765433
No 483
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=23.61 E-value=7.8e+02 Score=27.16 Aligned_cols=39 Identities=10% Similarity=0.164 Sum_probs=31.2
Q ss_pred CCCEEEEEcC--CCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 8 QQPHFVLFPF--LAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 8 ~~~kvl~~~~--~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
+..|++.++. |+-|-..-...||..|+..|+.|.++-..
T Consensus 529 ~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D 569 (726)
T PRK09841 529 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDAD 569 (726)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4567777765 46777777889999999999999999654
No 484
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=23.54 E-value=1.5e+02 Score=24.10 Aligned_cols=36 Identities=8% Similarity=0.239 Sum_probs=26.2
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTT 45 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~ 45 (488)
+..+|+++++++. +...+..+++|.+.|.+++++..
T Consensus 8 ~g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~ 43 (124)
T PF02780_consen 8 EGADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDL 43 (124)
T ss_dssp SSSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEee
Confidence 3456788877766 45678888888888888887643
No 485
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=23.51 E-value=93 Score=28.63 Aligned_cols=20 Identities=25% Similarity=0.210 Sum_probs=16.7
Q ss_pred HHHHHHHHHHCCCeEEEEeC
Q 011339 26 MIDTARLLAQHGAAITIVTT 45 (488)
Q Consensus 26 ~l~LA~~L~~rGH~Vt~~~~ 45 (488)
-.++|++|+++|++|+++..
T Consensus 28 G~AIA~~la~~Ga~Vvlv~~ 47 (227)
T TIGR02114 28 GKIITETFLSAGHEVTLVTT 47 (227)
T ss_pred HHHHHHHHHHCCCEEEEEcC
Confidence 36789999999999998753
No 486
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=23.38 E-value=4.9e+02 Score=22.47 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=28.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEE
Q 011339 11 HFVLFPFLAQGHMIPMIDTARLLAQHGAAITIV 43 (488)
Q Consensus 11 kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~ 43 (488)
-|.+++.++.|-....+.+|-+.+.+|+.|.|+
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~v 36 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVV 36 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 477788889999999999999999999999984
No 487
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=23.35 E-value=84 Score=31.65 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=25.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTT 45 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~ 45 (488)
.||+++-.+..| +.+|.+|+++|++|+++--
T Consensus 2 ~~vvIIGaG~~G-----~~~A~~La~~g~~V~vle~ 32 (410)
T PRK12409 2 SHIAVIGAGITG-----VTTAYALAQRGYQVTVFDR 32 (410)
T ss_pred CEEEEECCCHHH-----HHHHHHHHHCCCeEEEEeC
Confidence 478888877665 7889999999999999944
No 488
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=23.26 E-value=1.7e+02 Score=27.09 Aligned_cols=34 Identities=12% Similarity=0.021 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 011339 8 QQPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTT 45 (488)
Q Consensus 8 ~~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~ 45 (488)
++++|+++.. .| .--..|+++|.++||+|+.++-
T Consensus 16 ~~~~ilItGa--sG--~iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 16 KTKTVFVAGA--TG--RTGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred cCCeEEEECC--Cc--HHHHHHHHHHHhCCCEEEEEec
Confidence 6777877763 22 2235788899999999987654
No 489
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=23.14 E-value=1.2e+02 Score=26.21 Aligned_cols=34 Identities=9% Similarity=-0.024 Sum_probs=22.9
Q ss_pred CCEEEEEcCC--CccCHHHHHHHHHHHHHCCCeEEE
Q 011339 9 QPHFVLFPFL--AQGHMIPMIDTARLLAQHGAAITI 42 (488)
Q Consensus 9 ~~kvl~~~~~--~~GHv~p~l~LA~~L~~rGH~Vt~ 42 (488)
|.+|.+++.. ..-+..-...|++.|+++||.|..
T Consensus 1 ~~~I~V~gss~~~~~~~~~A~~lg~~La~~g~~lv~ 36 (159)
T TIGR00725 1 MVQIGVIGSSNKSEELYEIAYRLGKELAKKGHILIN 36 (159)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEc
Confidence 4578777665 333333467788899999996555
No 490
>CHL00194 ycf39 Ycf39; Provisional
Probab=23.05 E-value=1.3e+02 Score=29.08 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=23.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTP 46 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~ 46 (488)
|||+++ |+.|.+= ..|+++|.++||+|+.++-.
T Consensus 1 MkIlVt--GatG~iG--~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 1 MSLLVI--GATGTLG--RQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred CEEEEE--CCCcHHH--HHHHHHHHHCCCeEEEEEcC
Confidence 467765 4555443 45788999999999988754
No 491
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.02 E-value=6.8e+02 Score=24.05 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=30.3
Q ss_pred CeEEecccchh---hhhccCCcccccccCCchhHHHHhhcCCCEe
Q 011339 339 GILILGWAPQV---LILSHPSIGGFLTHCSWNSSLEGISAGVPLI 380 (488)
Q Consensus 339 nv~~~~~~pq~---~ll~~~~~~~~IthgG~gs~~eal~~GvP~v 380 (488)
.+.+.+|+||+ .+|-.|++ -+-. |--|.-.|..+|.|.+
T Consensus 239 rvvklPFvpqddyd~LL~lcD~--n~VR-GEDSFVRAq~agkPfl 280 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDF--NLVR-GEDSFVRAQLAGKPFL 280 (370)
T ss_pred EEEEecCCcHhHHHHHHHhccc--ceee-cchHHHHHHHcCCCcE
Confidence 45567899974 58888887 4444 5678999999999986
No 492
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=23.00 E-value=4.9e+02 Score=25.92 Aligned_cols=36 Identities=28% Similarity=0.412 Sum_probs=27.5
Q ss_pred hHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEE
Q 011339 107 QLPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISF 147 (488)
Q Consensus 107 ~~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~ 147 (488)
..++.+.+++ .+||++|.+.. ....++.+|+|++.+
T Consensus 337 ~~~~~~~~~~--~~pdl~ig~~~---~~~~~~~~~ip~~~~ 372 (399)
T cd00316 337 LEELEELIRE--LKPDLIIGGSK---GRYIAKKLGIPLVRI 372 (399)
T ss_pred HHHHHHHHhh--cCCCEEEECCc---HHHHHHHhCCCEEEc
Confidence 3455666777 69999998854 566788899999864
No 493
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=22.98 E-value=1.7e+02 Score=26.11 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=26.1
Q ss_pred CEEEEEcCCCcc--CHHHHHHHHHHHHHC---CCeEEEEeCC
Q 011339 10 PHFVLFPFLAQG--HMIPMIDTARLLAQH---GAAITIVTTP 46 (488)
Q Consensus 10 ~kvl~~~~~~~G--Hv~p~l~LA~~L~~r---GH~Vt~~~~~ 46 (488)
|+|+++.|+-++ ..||...++++|... |++|....-+
T Consensus 1 ~~vLvTGF~PF~~~~~NpS~~~v~~L~~~~~~~~~i~~~~lp 42 (194)
T cd00501 1 KKVLVTGFGPFGGEPVNPSWEAVKELPKLILGGAEVVGLELP 42 (194)
T ss_pred CEEEEEecCCCCCCCCChHHHHHHhccccccCCcEEEEEEcC
Confidence 578888886544 479999999999875 4555444333
No 494
>PRK00170 azoreductase; Reviewed
Probab=22.89 E-value=1.7e+02 Score=26.02 Aligned_cols=37 Identities=3% Similarity=0.041 Sum_probs=21.6
Q ss_pred CCEEEEEcC-CCc--cCHHHHH-HHHHHHHHC--CCeEEEEeC
Q 011339 9 QPHFVLFPF-LAQ--GHMIPMI-DTARLLAQH--GAAITIVTT 45 (488)
Q Consensus 9 ~~kvl~~~~-~~~--GHv~p~l-~LA~~L~~r--GH~Vt~~~~ 45 (488)
||||+++.. |-. |...-++ .+.+.|.++ ||+|+++--
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL 43 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDL 43 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 678866654 432 2222233 345566667 899988754
No 495
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=22.85 E-value=5.9e+02 Score=23.28 Aligned_cols=47 Identities=17% Similarity=0.115 Sum_probs=37.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCcchhhhHHH
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTTPANAARFKTV 55 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (488)
.--++++..++.|-....+.++..+.++|+.+.+++++...+.+.+.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~ 70 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQ 70 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH
Confidence 34567778889999999999999999999999999987555544333
No 496
>PRK10818 cell division inhibitor MinD; Provisional
Probab=22.79 E-value=1.4e+02 Score=28.09 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=30.7
Q ss_pred CCEEEEEcC--CCccCHHHHHHHHHHHHHCCCeEEEEeCCc
Q 011339 9 QPHFVLFPF--LAQGHMIPMIDTARLLAQHGAAITIVTTPA 47 (488)
Q Consensus 9 ~~kvl~~~~--~~~GHv~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (488)
|+||+-+.. |+-|-..-...||..|+++|++|.++-...
T Consensus 1 m~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~ 41 (270)
T PRK10818 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDI 41 (270)
T ss_pred CceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 446644443 688999999999999999999999986653
No 497
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=22.79 E-value=1.2e+02 Score=30.90 Aligned_cols=36 Identities=14% Similarity=0.310 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCcEEEe
Q 011339 108 LPLENLLKELTPKPSCIVSDTCYPWTVDTAARFNIPRISFH 148 (488)
Q Consensus 108 ~~l~~~l~~~~~~pD~vv~D~~~~~~~~~a~~lgiP~v~~~ 148 (488)
.++.+.+++ .+||++|.+.+ ...+|+.+|+|++.+.
T Consensus 360 ~e~~~~i~~--~~pdliig~~~---~~~~a~~~gip~~~~~ 395 (430)
T cd01981 360 TEVGDMIAR--TEPELIFGTQM---ERHIGKRLDIPCAVIS 395 (430)
T ss_pred HHHHHHHHh--hCCCEEEecch---hhHHHHHcCCCEEEEe
Confidence 345666677 78999999863 5557899999998763
No 498
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=22.75 E-value=1.2e+02 Score=29.26 Aligned_cols=32 Identities=3% Similarity=-0.043 Sum_probs=24.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeCC
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQH--GAAITIVTTP 46 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~r--GH~Vt~~~~~ 46 (488)
||||+++..++. + ++++.|++. ||+|..+...
T Consensus 1 ~~~vLv~g~~~~-~-----~~~~~l~~~~~g~~vi~~d~~ 34 (326)
T PRK12767 1 MMNILVTSAGRR-V-----QLVKALKKSLLKGRVIGADIS 34 (326)
T ss_pred CceEEEecCCcc-H-----HHHHHHHHhccCCEEEEECCC
Confidence 789999988533 2 788999998 4988887665
No 499
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=22.75 E-value=94 Score=29.89 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=25.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 011339 9 QPHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTT 45 (488)
Q Consensus 9 ~~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~ 45 (488)
|+||.|+..+..| .++|+.|+++||+|+++..
T Consensus 1 m~~Ig~IGlG~mG-----~~mA~~l~~~G~~V~v~d~ 32 (296)
T PRK15461 1 MAAIAFIGLGQMG-----SPMASNLLKQGHQLQVFDV 32 (296)
T ss_pred CCeEEEEeeCHHH-----HHHHHHHHHCCCeEEEEcC
Confidence 3578888776665 6789999999999988754
No 500
>PRK12743 oxidoreductase; Provisional
Probab=22.72 E-value=3.5e+02 Score=24.88 Aligned_cols=33 Identities=24% Similarity=0.161 Sum_probs=22.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 011339 10 PHFVLFPFLAQGHMIPMIDTARLLAQHGAAITIVTT 45 (488)
Q Consensus 10 ~kvl~~~~~~~GHv~p~l~LA~~L~~rGH~Vt~~~~ 45 (488)
+|.++++.++ |.+- ..+++.|+++||+|.++..
T Consensus 2 ~k~vlItGas-~giG--~~~a~~l~~~G~~V~~~~~ 34 (256)
T PRK12743 2 AQVAIVTASD-SGIG--KACALLLAQQGFDIGITWH 34 (256)
T ss_pred CCEEEEECCC-chHH--HHHHHHHHHCCCEEEEEeC
Confidence 3455555543 3332 6799999999999987754
Done!