BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011340
         (488 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1,
           An Sa-Induced And Partially Npr1-Dependent Transcription
           Factor
          Length = 76

 Score =  126 bits (316), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 55/72 (76%), Positives = 62/72 (86%)

Query: 259 VVQTLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVIT 318
           VV T +  D VNDGYRWRKYGQK VKG+P PR+YYRCS+ GCP KKHVER+SHD KL+IT
Sbjct: 4   VVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLIT 63

Query: 319 TYEGRHDHDMPP 330
           TYEG+HDHDMPP
Sbjct: 64  TYEGKHDHDMPP 75



 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 46/68 (67%), Gaps = 2/68 (2%)

Query: 87  VSTPTIREKVSEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLD-CTHEGQIVDT 145
           V T T+ + V+ DGY WRKYGQK V+G+ + RSYY+C+ P C  KK ++  +H+ +++ T
Sbjct: 5   VHTQTLFDIVN-DGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLIT 63

Query: 146 IYSGDHCH 153
            Y G H H
Sbjct: 64  TYEGKHDH 71


>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
           Atwrky4
 pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
           W-Box Dna
          Length = 78

 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 49/70 (70%), Positives = 61/70 (87%)

Query: 260 VQTLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVITT 319
           VQT SEVD ++DGYRWRKYGQK+VKGNP PR+YY+C+  GC  +KHVERA+ DPK V+TT
Sbjct: 8   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTT 67

Query: 320 YEGRHDHDMP 329
           YEG+H+HD+P
Sbjct: 68  YEGKHNHDLP 77



 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 38/57 (66%), Gaps = 1/57 (1%)

Query: 98  EDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLD-CTHEGQIVDTIYSGDHCH 153
           +DGY WRKYGQK+V+GN + RSYYKCT P C  +K ++    + + V T Y G H H
Sbjct: 18  DDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNH 74


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.307    0.125    0.359 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,589,939
Number of Sequences: 62578
Number of extensions: 577352
Number of successful extensions: 966
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 961
Number of HSP's gapped (non-prelim): 5
length of query: 488
length of database: 14,973,337
effective HSP length: 103
effective length of query: 385
effective length of database: 8,527,803
effective search space: 3283204155
effective search space used: 3283204155
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (25.0 bits)