Query 011340
Match_columns 488
No_of_seqs 287 out of 1161
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 06:06:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 2.1E-34 7.2E-39 236.8 5.8 73 259-331 4-76 (76)
2 1wj2_A Probable WRKY transcrip 100.0 3.1E-34 1.1E-38 236.8 4.5 72 259-330 7-78 (78)
3 2ayd_A WRKY transcription fact 100.0 1.9E-29 6.6E-34 207.4 5.9 63 95-157 12-75 (76)
4 1wj2_A Probable WRKY transcrip 100.0 2E-29 6.9E-34 208.1 5.3 62 95-156 15-77 (78)
5 2rpr_A Flywch-type zinc finger 66.5 3.4 0.00012 33.4 2.7 49 96-156 23-74 (87)
6 2rpr_A Flywch-type zinc finger 65.8 2 7E-05 34.7 1.3 50 267-329 22-74 (87)
7 1cz6_A Protein (androctonin); 19.6 38 0.0013 22.4 1.0 8 119-126 16-23 (26)
8 1odh_A MGCM1; transcription fa 14.7 1.3E+02 0.0044 28.2 3.7 37 293-332 123-160 (174)
9 1xiw_B T-cell surface glycopro 12.2 77 0.0026 25.4 1.4 27 98-124 17-53 (79)
10 1odh_A MGCM1; transcription fa 8.1 1.7E+02 0.0059 27.3 2.2 20 139-158 140-159 (174)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=2.1e-34 Score=236.80 Aligned_cols=73 Identities=75% Similarity=1.356 Sum_probs=71.0
Q ss_pred eeeeccccccCCCCchhhhccccccCCCCCCCccccccCCCCCcccceeeccCCCCeEEEEEeeccCCCCCCC
Q 011340 259 VVQTLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVITTYEGRHDHDMPPS 331 (488)
Q Consensus 259 Vvqt~Se~d~~dDGy~WRKYGQK~IkGn~~pRsYYrCt~~gC~akK~Ver~~~D~~~~~~TY~G~HnH~~p~~ 331 (488)
+|++.+++++++|||+|||||||.|+|++|||+|||||.++|+|+|+|||+.+|+.+|+|||+|+|||++|.+
T Consensus 4 ~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~~ 76 (76)
T 2ayd_A 4 VVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPG 76 (76)
T ss_dssp EEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCCC
T ss_pred EEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999863
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=3.1e-34 Score=236.75 Aligned_cols=72 Identities=68% Similarity=1.294 Sum_probs=69.7
Q ss_pred eeeeccccccCCCCchhhhccccccCCCCCCCccccccCCCCCcccceeeccCCCCeEEEEEeeccCCCCCC
Q 011340 259 VVQTLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVITTYEGRHDHDMPP 330 (488)
Q Consensus 259 Vvqt~Se~d~~dDGy~WRKYGQK~IkGn~~pRsYYrCt~~gC~akK~Ver~~~D~~~~~~TY~G~HnH~~p~ 330 (488)
+|++.+++++++|||+|||||||.|||++|||+|||||.++|+|+|+|||+.+|+.+|+|||+|+|||+.|.
T Consensus 7 ~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 7 GVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp -CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred EEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999984
No 3
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.95 E-value=1.9e-29 Score=207.35 Aligned_cols=63 Identities=43% Similarity=0.942 Sum_probs=58.8
Q ss_pred cccCCCcceeecCccccCCCCCCceeEeccCCCccccccchhcC-CCCeEEEEecCCCCCCCCC
Q 011340 95 KVSEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLDCTH-EGQIVDTIYSGDHCHPKVP 157 (488)
Q Consensus 95 ~~~dDGy~WRKYGQK~Ikgs~~pRsYYrCt~~~C~akK~Vq~s~-dg~i~~i~Y~G~HnH~~p~ 157 (488)
.+.+|||+|||||||.|||++|||+|||||+++|+|+|+|||+. |+++++|+|+|.|||+.|.
T Consensus 12 ~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 12 DIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp SCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 35789999999999999999999999999999999999999875 6789999999999999874
No 4
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.95 E-value=2e-29 Score=208.12 Aligned_cols=62 Identities=47% Similarity=0.933 Sum_probs=58.2
Q ss_pred cccCCCcceeecCccccCCCCCCceeEeccCCCccccccchhc-CCCCeEEEEecCCCCCCCC
Q 011340 95 KVSEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLDCT-HEGQIVDTIYSGDHCHPKV 156 (488)
Q Consensus 95 ~~~dDGy~WRKYGQK~Ikgs~~pRsYYrCt~~~C~akK~Vq~s-~dg~i~~i~Y~G~HnH~~p 156 (488)
.+.+|||+|||||||.|||++|||+|||||+++|+|+|+|||. +|++++.|+|+|.|||+.|
T Consensus 15 ~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 77 (78)
T 1wj2_A 15 DLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77 (78)
T ss_dssp CCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred CcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence 3578999999999999999999999999999999999999986 5788999999999999987
No 5
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=66.46 E-value=3.4 Score=33.44 Aligned_cols=49 Identities=16% Similarity=0.371 Sum_probs=32.3
Q ss_pred ccCCCcceeecCccccCCCCCCceeEeccC---CCccccccchhcCCCCeEEEEecCCCCCCCC
Q 011340 96 VSEDGYNWRKYGQKLVRGNEFVRSYYKCTH---PRCLAKKQLDCTHEGQIVDTIYSGDHCHPKV 156 (488)
Q Consensus 96 ~~dDGy~WRKYGQK~Ikgs~~pRsYYrCt~---~~C~akK~Vq~s~dg~i~~i~Y~G~HnH~~p 156 (488)
+.-|||...+--+ ...+.|.+|+. .+|.|+-.... ++ ++..+.|||++.
T Consensus 23 Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~----~~~~~~HnH~p~ 74 (87)
T 2rpr_A 23 LVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR----IMVMRSHCHQPD 74 (87)
T ss_dssp EEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE----EEECSCCSSCCC
T ss_pred EEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC----EECCCCcCCCCc
Confidence 4469998776321 13468999986 36999854433 22 345789999764
No 6
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=65.80 E-value=2 Score=34.74 Aligned_cols=50 Identities=20% Similarity=0.454 Sum_probs=32.9
Q ss_pred ccCCCCchhhhccccccCCCCCCCccccccC---CCCCcccceeeccCCCCeEEEEEeeccCCCCC
Q 011340 267 DFVNDGYRWRKYGQKLVKGNPNPRNYYRCSN---SGCPAKKHVERASHDPKLVITTYEGRHDHDMP 329 (488)
Q Consensus 267 d~~dDGy~WRKYGQK~IkGn~~pRsYYrCt~---~gC~akK~Ver~~~D~~~~~~TY~G~HnH~~p 329 (488)
-++-|||...+--+ ...+.|.+|+. .+|.|+=.... ++ + ...+.|||++.
T Consensus 22 ~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~---~--~~~~~HnH~p~ 74 (87)
T 2rpr_A 22 FLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR---I--MVMRSHCHQPD 74 (87)
T ss_dssp EEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE---E--EECSCCSSCCC
T ss_pred EEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC---E--ECCCCcCCCCc
Confidence 45679998775322 13478999985 58999854442 22 3 35688999754
No 7
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=19.63 E-value=38 Score=22.36 Aligned_cols=8 Identities=63% Similarity=1.381 Sum_probs=6.6
Q ss_pred eeEeccCC
Q 011340 119 SYYKCTHP 126 (488)
Q Consensus 119 sYYrCt~~ 126 (488)
.||+||..
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 59999964
No 8
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=14.67 E-value=1.3e+02 Score=28.15 Aligned_cols=37 Identities=27% Similarity=0.640 Sum_probs=23.3
Q ss_pred cccc-CCCCCcccceeeccCCCCeEEEEEeeccCCCCCCCC
Q 011340 293 YRCS-NSGCPAKKHVERASHDPKLVITTYEGRHDHDMPPSR 332 (488)
Q Consensus 293 YrCt-~~gC~akK~Ver~~~D~~~~~~TY~G~HnH~~p~~r 332 (488)
+.|. ..|=||+-.-- +++..+...-+|.|+|+.|.+.
T Consensus 123 ~~Crgh~GyPVThFWr---h~~~~ifFqaKG~HDHpRPe~k 160 (174)
T 1odh_A 123 IPCRGHGGFPVTNFWR---HDGRFIFFQSKGEHDHPRPETK 160 (174)
T ss_dssp ECCCTBTTBCCEEEEE---ECSSBEEEEEECCCCSCCCCCH
T ss_pred EeccCcCCCcceEEEE---EcCCEEEEecccccCCCCCCCc
Confidence 4444 23445543322 4556666778899999999864
No 9
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=12.25 E-value=77 Score=25.36 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=19.0
Q ss_pred CCCcceeecCcc--------ccCCC--CCCceeEecc
Q 011340 98 EDGYNWRKYGQK--------LVRGN--EFVRSYYKCT 124 (488)
Q Consensus 98 dDGy~WRKYGQK--------~Ikgs--~~pRsYYrCt 124 (488)
..++.|-|-|.. .++|. .-||+||.|.
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~ 53 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCN 53 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEec
Confidence 567889998864 23433 4499999994
No 10
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=8.09 E-value=1.7e+02 Score=27.29 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=13.0
Q ss_pred CCCeEEEEecCCCCCCCCCC
Q 011340 139 EGQIVDTIYSGDHCHPKVPN 158 (488)
Q Consensus 139 dg~i~~i~Y~G~HnH~~p~~ 158 (488)
+|..+..--+|.|+||+|..
T Consensus 140 ~~~~ifFqaKG~HDHpRPe~ 159 (174)
T 1odh_A 140 DGRFIFFQSKGEHDHPRPET 159 (174)
T ss_dssp CSSBEEEEEECCCCSCCCCC
T ss_pred cCCEEEEecccccCCCCCCC
Confidence 33333334579999999953
Done!