BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011341
(488 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P74007|SPOT_SYNY3 Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=spoT
PE=3 SV=1
Length = 760
Score = 284 bits (727), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 155/340 (45%), Positives = 215/340 (63%), Gaps = 12/340 (3%)
Query: 2 RASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVE 61
R SG+PY+ H V A LL +G + ++AAG LHD ++D +S + I FG A LVE
Sbjct: 70 RKSGEPYIAHPVAVAGLLRDLGGDEAMIAAGFLHDVVEDTDISIEQIEALFGEETASLVE 129
Query: 62 GVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPL 120
GV+KLS+ N +++ +A+ MFLAMA D R +++KLADRLHNM TLDAL
Sbjct: 130 GVTKLSKF------NFSSTTEHQAENFRRMFLAMAKDIRVIVVKLADRLHNMRTLDALSP 183
Query: 121 CKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFD--EAM 178
K++R A+ET +IF PLANRLGI +K +LE+L FK+L PD + ++ S +VE E+
Sbjct: 184 EKQRRIARETKDIFAPLANRLGIWRFKWELEDLSFKYLEPDSYRKIQSLVVEKRGDRESR 243
Query: 179 VTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEE 238
+ + + L L+D+ I L GR K LY I+ KM + +EI+DI LR+IVE++
Sbjct: 244 LETVKDMLRFRLRDEGIEHFELQGRPKHLYGIYYKMTSQDKAFEEIYDIAALRIIVESKG 303
Query: 239 DCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQA 298
+CY+AL VVH ++ +PG+ KDYI PK N YQSLHT V G PLE+QIRT+EMH A
Sbjct: 304 ECYRALSVVHDVFKPIPGRFKDYIGLPKPNRYQSLHTTVLGLTSRPLEIQIRTEEMHHVA 363
Query: 299 EFGFAAHWRYKEGDCQHSSFVLQMVE---WARWVLTWQCE 335
E+G AAHW+YKE ++ + E W R +L WQ +
Sbjct: 364 EYGIAAHWKYKESGGSENATLTSTDEKFTWLRQLLDWQSD 403
>sp|O87331|RELA_CORGL GTP pyrophosphokinase OS=Corynebacterium glutamicum (strain ATCC
13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
GN=relA PE=3 SV=2
Length = 760
Score = 268 bits (686), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 148/342 (43%), Positives = 215/342 (62%), Gaps = 16/342 (4%)
Query: 1 MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLV 60
+R SGDPY+ H + A + A IG ++T + A LLHDT++D S D + R FG VA LV
Sbjct: 70 IRKSGDPYITHPLAVATIAAEIGMDTTTLVAALLHDTVEDTDYSLDDLTRDFGEEVARLV 129
Query: 61 EGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALP 119
+GV+KL +++ A EA+ + M +AM+ D R ++IK+ADRLHNM T+ LP
Sbjct: 130 DGVTKLDKVALGA--------AAEAETIRKMIVAMSQDPRVLVIKVADRLHNMRTMRFLP 181
Query: 120 LCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVE--CFDEA 177
K+ + A++TLE+ PLA+RLG+++ K +LE+L F L P ++ E+ + + +
Sbjct: 182 PEKQAKKARQTLEVIAPLAHRLGMASVKWELEDLSFAILYPKKYEEIVRLVADRAPSRDR 241
Query: 178 MVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENE 237
+ I+++ L++ NI+ VL GR K +SI+ KM+ + D+I D+ G+R++V+N
Sbjct: 242 YLKEIIDQVTGGLRENNIAAEVL-GRPKHYWSIYQKMIVRGRDFDDIFDLVGIRILVDNV 300
Query: 238 EDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQ 297
+CY A+ VVH L+ +PG+ KDYI+ P+F YQSLHT V G G PLEVQ RT +MH
Sbjct: 301 NNCYAAIGVVHSLFNALPGRFKDYISAPRFGVYQSLHTTVMGPGGKPLEVQARTHDMHYN 360
Query: 298 AEFGFAAHWRYKEGDCQHS---SFVLQMVEWARWVLTWQCEA 336
AEFG AAHWRYKE HS + V QM W R +L WQ EA
Sbjct: 361 AEFGIAAHWRYKETKGSHSGEQAEVDQMA-WMRQLLDWQKEA 401
>sp|O54408|RELA_BACSU GTP pyrophosphokinase OS=Bacillus subtilis (strain 168) GN=relA
PE=3 SV=3
Length = 734
Score = 258 bits (660), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 139/339 (41%), Positives = 206/339 (60%), Gaps = 11/339 (3%)
Query: 2 RASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVE 61
R SG+PY++H ++ A +L + + + +A G LHD ++D ++ D + F VA LV+
Sbjct: 44 RKSGEPYIIHPIQVAGILVDLEMDPSTIAGGFLHDVVEDTDVTLDDLKEAFSEEVAMLVD 103
Query: 62 GVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPL 120
GV+KL ++ ++E +A+ MF+AMA D R +LIKLADRLHNM TL LP
Sbjct: 104 GVTKLGKIKYKSQEEQ------QAENHRKMFVAMAQDIRVILIKLADRLHNMRTLKHLPQ 157
Query: 121 CKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSS--KLVECFDEAM 178
K++R + ETLEIF PLA+RLGIS K +LE+ ++LNP Q+ + + K E
Sbjct: 158 EKQRRISNETLEIFAPLAHRLGISKIKWELEDTALRYLNPQQYYRIVNLMKKKRAERELY 217
Query: 179 VTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEE 238
V + ++++ +++ NI GR K +YSI+ KM+ + +EI+D+ +R++V + +
Sbjct: 218 VDEVVNEVKKRVEEVNIK-ADFSGRPKHIYSIYRKMVLQNKQFNEIYDLLAVRILVNSIK 276
Query: 239 DCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQA 298
DCY L ++H W +PG+ KDYI PK N YQSLHT V G PLEVQIRT EMH A
Sbjct: 277 DCYAVLGIIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTFEMHEIA 336
Query: 299 EFGFAAHWRYKEGDCQHSSFVLQ-MVEWARWVLTWQCEA 336
E+G AAHW YKEG + + + W R +L +Q E+
Sbjct: 337 EYGVAAHWAYKEGKAANEGATFEKKLSWFREILEFQNES 375
>sp|O52177|RELA_MYXXA GTP pyrophosphokinase OS=Myxococcus xanthus GN=relA PE=3 SV=1
Length = 757
Score = 256 bits (653), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 138/334 (41%), Positives = 204/334 (61%), Gaps = 13/334 (3%)
Query: 1 MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLV 60
+R SG+PYL+H +E A +L + + + GLLHDT++D + + + FG+ VA LV
Sbjct: 56 LRKSGEPYLVHPLEVAGILGELKLDEASIVTGLLHDTIEDTLATEEELTELFGSEVAHLV 115
Query: 61 EGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALP 119
+GV+KLS+ S A + + + +A+ M +AMA D R +L+KLADR HNM TLD +
Sbjct: 116 DGVTKLSKFSASA---SLSQEEKQAENFRKMIIAMAQDIRVILVKLADRTHNMRTLDHMS 172
Query: 120 LCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDE--A 177
K+ R A+ETL+I+ PLANRLGIS K +LE+L F+++ P + L +KL + E
Sbjct: 173 EEKQARIAQETLDIYAPLANRLGISWIKTELEDLSFRYVKPQEFFALQAKLNKRKKEREK 232
Query: 178 MVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENE 237
+ + + L ++ + V GR K +YSI+ K+ + + D+IHDI R+I
Sbjct: 233 YIEDTCDLIRSKLAERGLKGEV-SGRFKHVYSIYKKIKSQGIDFDQIHDIIAFRIIAPTA 291
Query: 238 EDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQ 297
CY+AL +VH++W VPG+ KD+I PK N YQSLHT + G +EVQIRT EMH
Sbjct: 292 PSCYEALGLVHEMWKPVPGRFKDFIAIPKPNMYQSLHTTIIGPLSERVEVQIRTSEMHKI 351
Query: 298 AEFGFAAHWRYKEG------DCQHSSFVLQMVEW 325
AE G AAHW+YKEG D + +++ Q++EW
Sbjct: 352 AEEGIAAHWKYKEGKAVISKDDEKFAWLRQLMEW 385
>sp|Q8CS97|RELA_STAES GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC
12228) GN=relA PE=3 SV=1
Length = 729
Score = 254 bits (648), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 132/314 (42%), Positives = 197/314 (62%), Gaps = 10/314 (3%)
Query: 1 MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLV 60
R +G PY++H ++ A +L + + + AG LHD ++D +++ + F +A +V
Sbjct: 43 FRKNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTSYTFEDVKDMFNEEIARIV 102
Query: 61 EGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALP 119
+GV+KL ++ ++E +A+ +F+A+A D R +L+KLADRLHNM TL A+P
Sbjct: 103 DGVTKLKKVKYRSKEEQ------QAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMP 156
Query: 120 LCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSS--KLVECFDEA 177
K+ R +KETLEI+ PLA+RLGI+T K +LE+ ++++ Q+ + + K EA
Sbjct: 157 REKQVRISKETLEIYAPLAHRLGINTIKWELEDTALRYIDSVQYFRIVNLMKKKRSEREA 216
Query: 178 MVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENE 237
+T+AI K++ + N+S + GR K +YSI+ KM+K+K D+I D+ +R+IV +
Sbjct: 217 YITNAINKIKNEMTKMNLSGEI-NGRPKHIYSIYRKMIKQKKQFDQIFDLLAIRIIVNSI 275
Query: 238 EDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQ 297
DCY L +VH LW +PG+ KDYI PK N YQSLHT V G PLE+QIRT EMH
Sbjct: 276 NDCYATLGLVHTLWKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTHEMHEI 335
Query: 298 AEFGFAAHWRYKEG 311
AE G AAHW YKEG
Sbjct: 336 AEHGVAAHWAYKEG 349
>sp|Q5HNR8|RELA_STAEQ GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=relA PE=3 SV=1
Length = 729
Score = 254 bits (648), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 132/314 (42%), Positives = 197/314 (62%), Gaps = 10/314 (3%)
Query: 1 MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLV 60
R +G PY++H ++ A +L + + + AG LHD ++D +++ + F +A +V
Sbjct: 43 FRKNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTSYTFEDVKDMFNEEIARIV 102
Query: 61 EGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALP 119
+GV+KL ++ ++E +A+ +F+A+A D R +L+KLADRLHNM TL A+P
Sbjct: 103 DGVTKLKKVKYRSKEEQ------QAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMP 156
Query: 120 LCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSS--KLVECFDEA 177
K+ R +KETLEI+ PLA+RLGI+T K +LE+ ++++ Q+ + + K EA
Sbjct: 157 REKQVRISKETLEIYAPLAHRLGINTIKWELEDTALRYIDSVQYFRIVNLMKKKRSEREA 216
Query: 178 MVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENE 237
+T+AI K++ + N+S + GR K +YSI+ KM+K+K D+I D+ +R+IV +
Sbjct: 217 YITNAINKIKNEMTKMNLSGEI-NGRPKHIYSIYRKMIKQKKQFDQIFDLLAIRIIVNSI 275
Query: 238 EDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQ 297
DCY L +VH LW +PG+ KDYI PK N YQSLHT V G PLE+QIRT EMH
Sbjct: 276 NDCYATLGLVHTLWKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTHEMHEI 335
Query: 298 AEFGFAAHWRYKEG 311
AE G AAHW YKEG
Sbjct: 336 AEHGVAAHWAYKEG 349
>sp|P52560|RELA_STRCO GTP pyrophosphokinase OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=relA PE=3 SV=1
Length = 847
Score = 252 bits (643), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 146/355 (41%), Positives = 208/355 (58%), Gaps = 33/355 (9%)
Query: 2 RASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVE 61
R SGDPY+ H + +LA +G + + AGLLHDT++D + + R FG V LV+
Sbjct: 143 RKSGDPYITHPLAVTTILAELGMDPATLMAGLLHDTVEDTEYGLEDLRRDFGDVVTLLVD 202
Query: 62 GVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPL 120
GV+KL ++ + +A+ + M +AMA D R ++IKLADRLHNM T+ L
Sbjct: 203 GVTKLDKVK--------FGEAAQAETVRKMVVAMAKDPRVLVIKLADRLHNMRTMRYLKR 254
Query: 121 CKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECF---DE- 176
K+++ A+ETLEI+ PLA+RLG++T K +LE+L F L P + E+ + E DE
Sbjct: 255 EKQEKKARETLEIYAPLAHRLGMNTIKWELEDLAFAILYPKMYDEIVRLVAERAPKRDEY 314
Query: 177 -AMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVE 235
A+VT ++++Q L+ I V GR K YS++ KM+ + EI+D+ G+R++V+
Sbjct: 315 LAVVT---DEVQQDLRAARIKATV-TGRPKHYYSVYQKMIVRGRDFAEIYDLVGIRVLVD 370
Query: 236 NEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMH 295
DCY AL VH W VPG+ KDYI PKFN YQSLHT V G G P+E+QIRT +MH
Sbjct: 371 TVRDCYAALGTVHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPGGKPVELQIRTFDMH 430
Query: 296 LQAEFGFAAHWRYKEGDCQHSSFV---------------LQMVEWARWVLTWQCE 335
+AE+G AAHW+YK+ +S V L + W R +L WQ E
Sbjct: 431 RRAEYGIAAHWKYKQEAVAGASKVRTDAPKSSGKSKDDHLNDMAWLRQLLDWQKE 485
>sp|P0AG26|SPOT_SHIFL Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Shigella flexneri GN=spoT PE=3 SV=1
Length = 702
Score = 251 bits (641), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 143/340 (42%), Positives = 201/340 (59%), Gaps = 10/340 (2%)
Query: 2 RASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVE 61
R+SG+PY+ H V A +LA + + + A LLHD ++D +Y + + FG VA+LVE
Sbjct: 39 RSSGEPYITHPVAVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVE 98
Query: 62 GVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPL 120
GVSKL +L + K +A+ M +AM D R +LIKLADR HNM TL +L
Sbjct: 99 GVSKLDKLKFRDK------KEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRP 152
Query: 121 CKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSS--KLVECFDEAM 178
KR+R A+ETLEI+ PLA+RLGI K +LE L F+ L P+++ + K + M
Sbjct: 153 DKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEM 212
Query: 179 VTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEE 238
+ + ++E L++ I V GR K LYSI+CKM+ K+ I DIY R+IV + +
Sbjct: 213 IQKILSEIEGRLQEAGIPCRV-SGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVNDSD 271
Query: 239 DCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQA 298
CY+ L +H L+ PG++KDYI PK NGYQSLHT + G VP+EVQIRT++M A
Sbjct: 272 TCYRVLGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMA 331
Query: 299 EFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMS 338
E G AAHW YKE ++ ++ W + +L Q A S
Sbjct: 332 EMGVAAHWAYKEHGETSTTAQIRAQRWMQSLLELQQSAGS 371
>sp|P0AG24|SPOT_ECOLI Bifunctional (p)ppGpp synthase/hydrolase SpoT OS=Escherichia coli
(strain K12) GN=spoT PE=1 SV=1
Length = 702
Score = 251 bits (641), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 143/340 (42%), Positives = 201/340 (59%), Gaps = 10/340 (2%)
Query: 2 RASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVE 61
R+SG+PY+ H V A +LA + + + A LLHD ++D +Y + + FG VA+LVE
Sbjct: 39 RSSGEPYITHPVAVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVE 98
Query: 62 GVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPL 120
GVSKL +L + K +A+ M +AM D R +LIKLADR HNM TL +L
Sbjct: 99 GVSKLDKLKFRDK------KEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRP 152
Query: 121 CKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSS--KLVECFDEAM 178
KR+R A+ETLEI+ PLA+RLGI K +LE L F+ L P+++ + K + M
Sbjct: 153 DKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEM 212
Query: 179 VTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEE 238
+ + ++E L++ I V GR K LYSI+CKM+ K+ I DIY R+IV + +
Sbjct: 213 IQKILSEIEGRLQEAGIPCRV-SGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVNDSD 271
Query: 239 DCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQA 298
CY+ L +H L+ PG++KDYI PK NGYQSLHT + G VP+EVQIRT++M A
Sbjct: 272 TCYRVLGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMA 331
Query: 299 EFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMS 338
E G AAHW YKE ++ ++ W + +L Q A S
Sbjct: 332 EMGVAAHWAYKEHGETSTTAQIRAQRWMQSLLELQQSAGS 371
>sp|P0AG25|SPOT_ECO57 Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Escherichia coli O157:H7 GN=spoT PE=3 SV=1
Length = 702
Score = 251 bits (641), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 143/340 (42%), Positives = 201/340 (59%), Gaps = 10/340 (2%)
Query: 2 RASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVE 61
R+SG+PY+ H V A +LA + + + A LLHD ++D +Y + + FG VA+LVE
Sbjct: 39 RSSGEPYITHPVAVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVE 98
Query: 62 GVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPL 120
GVSKL +L + K +A+ M +AM D R +LIKLADR HNM TL +L
Sbjct: 99 GVSKLDKLKFRDK------KEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRP 152
Query: 121 CKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSS--KLVECFDEAM 178
KR+R A+ETLEI+ PLA+RLGI K +LE L F+ L P+++ + K + M
Sbjct: 153 DKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEM 212
Query: 179 VTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEE 238
+ + ++E L++ I V GR K LYSI+CKM+ K+ I DIY R+IV + +
Sbjct: 213 IQKILSEIEGRLQEAGIPCRV-SGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVNDSD 271
Query: 239 DCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQA 298
CY+ L +H L+ PG++KDYI PK NGYQSLHT + G VP+EVQIRT++M A
Sbjct: 272 TCYRVLGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMA 331
Query: 299 EFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMS 338
E G AAHW YKE ++ ++ W + +L Q A S
Sbjct: 332 EMGVAAHWAYKEHGETSTTAQIRAQRWMQSLLELQQSAGS 371
>sp|P66015|RELA_MYCBO Probable GTP pyrophosphokinase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=relA PE=3 SV=1
Length = 790
Score = 251 bits (641), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 138/354 (38%), Positives = 205/354 (57%), Gaps = 36/354 (10%)
Query: 1 MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLV 60
+R SGDPY+ H + A +LA +G ++T + A LLHDT++D + + + FG V LV
Sbjct: 98 LRQSGDPYITHPLAVANILAELGMDTTTLVAALLHDTVEDTGYTLEALTEEFGEEVGHLV 157
Query: 61 EGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALP 119
+GV+KL ++ E + + M AMA D R ++IK+ADRLHNM T+ LP
Sbjct: 158 DGVTKLDRV--------VLGSAAEGETIRKMITAMARDPRVLVIKVADRLHNMRTMRFLP 209
Query: 120 LCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTEL-----------SS 168
K+ R A+ETLE+ PLA+RLG+++ K +LE+L F L+P ++ E+ +
Sbjct: 210 PEKQARKARETLEVIAPLAHRLGMASVKWELEDLSFAILHPKKYEEIVRLVAGRAPSRDT 269
Query: 169 KLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIY 228
L + E + T K++ ++ GR K +SI+ KM+ K D+IHD+
Sbjct: 270 YLAKVRAEIVNTLTASKIKATVE----------GRPKHYWSIYQKMIVKGRDFDDIHDLV 319
Query: 229 GLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQ 288
G+R++ + DCY A+ VVH LW + G+ KDYI +P++ YQSLHT V G PLEVQ
Sbjct: 320 GVRILCDEIRDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQ 379
Query: 289 IRTKEMHLQAEFGFAAHWRYKEGDCQ------HSSFVLQMVEWARWVLTWQCEA 336
IRT++MH AE+G AAHWRYKE + H++ + + W R +L WQ EA
Sbjct: 380 IRTRDMHRTAEYGIAAHWRYKEAKGRNGVLHPHAAAEIDDMAWMRQLLDWQREA 433
>sp|P66014|RELA_MYCTU Bifunctional (p)ppGpp synthase/hydrolase relA OS=Mycobacterium
tuberculosis GN=relA PE=1 SV=2
Length = 738
Score = 251 bits (640), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 138/354 (38%), Positives = 205/354 (57%), Gaps = 36/354 (10%)
Query: 1 MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLV 60
+R SGDPY+ H + A +LA +G ++T + A LLHDT++D + + + FG V LV
Sbjct: 46 LRQSGDPYITHPLAVANILAELGMDTTTLVAALLHDTVEDTGYTLEALTEEFGEEVGHLV 105
Query: 61 EGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALP 119
+GV+KL ++ E + + M AMA D R ++IK+ADRLHNM T+ LP
Sbjct: 106 DGVTKLDRV--------VLGSAAEGETIRKMITAMARDPRVLVIKVADRLHNMRTMRFLP 157
Query: 120 LCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTEL-----------SS 168
K+ R A+ETLE+ PLA+RLG+++ K +LE+L F L+P ++ E+ +
Sbjct: 158 PEKQARKARETLEVIAPLAHRLGMASVKWELEDLSFAILHPKKYEEIVRLVAGRAPSRDT 217
Query: 169 KLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIY 228
L + E + T K++ ++ GR K +SI+ KM+ K D+IHD+
Sbjct: 218 YLAKVRAEIVNTLTASKIKATVE----------GRPKHYWSIYQKMIVKGRDFDDIHDLV 267
Query: 229 GLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQ 288
G+R++ + DCY A+ VVH LW + G+ KDYI +P++ YQSLHT V G PLEVQ
Sbjct: 268 GVRILCDEIRDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQ 327
Query: 289 IRTKEMHLQAEFGFAAHWRYKEGDCQ------HSSFVLQMVEWARWVLTWQCEA 336
IRT++MH AE+G AAHWRYKE + H++ + + W R +L WQ EA
Sbjct: 328 IRTRDMHRTAEYGIAAHWRYKEAKGRNGVLHPHAAAEIDDMAWMRQLLDWQREA 381
>sp|Q49640|RELA_MYCLE Probable GTP pyrophosphokinase OS=Mycobacterium leprae (strain TN)
GN=relA PE=3 SV=1
Length = 787
Score = 250 bits (638), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 138/354 (38%), Positives = 204/354 (57%), Gaps = 36/354 (10%)
Query: 1 MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLV 60
+R SGDPY+ H + A +LA +G + T + A LLHDT++D + + + FG V LV
Sbjct: 95 LRRSGDPYITHPLAVANILAELGMDITTLVAALLHDTVEDTGYTLEALSEEFGDEVGHLV 154
Query: 61 EGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALP 119
+GV+KL ++ E + + M AMA D R ++IK+ADRLHNM T+ LP
Sbjct: 155 DGVTKLDRV--------VLGSAAEGETIRKMITAMARDPRVLVIKVADRLHNMRTMRFLP 206
Query: 120 LCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTEL-----------SS 168
K+ R A+ETLE+ PLA+RLG+++ K +LE+L F L+P ++ E+ +
Sbjct: 207 PEKQARKARETLEVIAPLAHRLGMASVKWELEDLSFAILHPKKYEEIVRLVAGRAPSRDT 266
Query: 169 KLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIY 228
L + E + T K++ ++ GR K +SI+ KM+ K D+IHD+
Sbjct: 267 YLAKVRAEIISTLGASKIKATVE----------GRPKHYWSIYQKMIVKGRDFDDIHDLV 316
Query: 229 GLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQ 288
G+R++ + DCY A+ VVH LW + G+ KDYI +P++ YQSLHT V G PLEVQ
Sbjct: 317 GIRILCDEIRDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQ 376
Query: 289 IRTKEMHLQAEFGFAAHWRYKEGDCQ------HSSFVLQMVEWARWVLTWQCEA 336
IRT++MH AE+G AAHWRYKE + H++ + + W R +L WQ EA
Sbjct: 377 IRTRDMHRTAEYGIAAHWRYKEAKGRNGVLHPHAAAEIDDMAWMRQLLDWQREA 430
>sp|Q54089|RELA_STREQ Bifunctional (p)ppGpp synthase/hydrolase RelA OS=Streptococcus
dysgalactiae subsp. equisimilis GN=relA PE=1 SV=1
Length = 739
Score = 249 bits (636), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 161/455 (35%), Positives = 250/455 (54%), Gaps = 51/455 (11%)
Query: 1 MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLV 60
+R SG+PY++H ++ A +LA + ++ VA G LHD ++D ++ D I FG V D+V
Sbjct: 43 VRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTDITLDNIEFDFGKDVRDIV 102
Query: 61 EGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALP 119
+GV+KL ++ + E A + M +AM+ D R +L+KLADRLHNM TL L
Sbjct: 103 DGVTKLGKVEYKSHEEQLA------ENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLR 156
Query: 120 LCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDE--A 177
K++R ++ET+EI+ PLA+RLGIS K +LE+L F++LN + ++S + E E A
Sbjct: 157 KDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYKISHMMNEKRREREA 216
Query: 178 MVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENE 237
+V + K++ ++ + F + GR K +YSI+ KM KK D+I D+ +R ++E +
Sbjct: 217 LVDDIVTKIKSYTTEQGL-FGDVYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMETQ 275
Query: 238 EDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTG-EGLVPLEVQIRTKEMHL 296
D Y + +H+LW +PG+ KDYI PK NGYQS+HT V G +G P+E+QIRTKEMH
Sbjct: 276 SDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPKG--PIEIQIRTKEMHQ 333
Query: 297 QAEFGFAAHWRYKEGDCQHSSFVLQMV--EWARWVLTWQCEAMSKDRSCVGNGDSIKPPC 354
AE+G AAHW YK+G + Q V W + ++ Q + NGD++
Sbjct: 334 VAEYGVAAHWAYKKGVRGKVNQAEQKVGMNWIKELVELQDAS---------NGDAV---- 380
Query: 355 TFPSHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSP 414
F + FS + I + +VQE P S +D ++
Sbjct: 381 DFVDSVKEDIFSER-----------IYVFTPTGAVQELPKDSGPIDFA---------YAI 420
Query: 415 YGFPLKEELRPRLNHKAVGDP-RCKLKMGDVVELT 448
+ ++ + ++N + V P KLK GDVVE+
Sbjct: 421 HTQVGEKAIGAKVNGRMV--PLTAKLKTGDVVEIV 453
>sp|O85709|RELA_STRAT GTP pyrophosphokinase OS=Streptomyces antibioticus GN=relA PE=3
SV=1
Length = 841
Score = 247 bits (630), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 143/354 (40%), Positives = 206/354 (58%), Gaps = 32/354 (9%)
Query: 2 RASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVE 61
R SGDPY+ H + +LA +G + + AGLLHD+ +D D + R FG V LV+
Sbjct: 140 RKSGDPYITHPLAVTTILAELGMDPATLMAGLLHDSREDTEYGLDDLRRDFGDVVGLLVD 199
Query: 62 GVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPL 120
GV+KL ++ + +A+ + M +AMA D R ++IKLADRLHNM T+ L
Sbjct: 200 GVTKLDKVK--------FGEAAQAETVRKMVVAMAKDPRVLVIKLADRLHNMRTMRYLKR 251
Query: 121 CKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECF---DE- 176
K+++ A+ETLEI+ PLA+RLG++T K +LE+L F L P + E+ + E DE
Sbjct: 252 EKQEKKARETLEIYAPLAHRLGMNTIKWELEDLAFAILYPKMYDEIVRLVAERAPKRDEY 311
Query: 177 -AMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVE 235
A+VT ++++ L+ + I V GR K YS++ K++ + EI+D+ G+R++V+
Sbjct: 312 LAIVT---DEVQSDLRARRIKATV-TGRPKHYYSVYQKIIVRGRDFAEIYDLVGIRVLVD 367
Query: 236 NEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMH 295
DCY AL VH W VPG+ KDYI PKFN YQSLHT V G P+E+QIRT +MH
Sbjct: 368 TVRDCYAALGTVHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPNGKPVELQIRTFDMH 427
Query: 296 LQAEFGFAAHWRYKEGDCQHSSFV--------------LQMVEWARWVLTWQCE 335
+AE+G AAHW+YK+ +S V L + W R +L WQ E
Sbjct: 428 RRAEYGIAAHWKYKQEAVARASKVRTDVPKPAKGKDDHLNDMAWLRQLLDWQKE 481
>sp|Q6GG70|RELA_STAAR GTP pyrophosphokinase OS=Staphylococcus aureus (strain MRSA252)
GN=relA PE=3 SV=1
Length = 736
Score = 244 bits (624), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 129/314 (41%), Positives = 195/314 (62%), Gaps = 10/314 (3%)
Query: 1 MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLV 60
R +G PY++H ++ A +L + + + AG LHD ++D +++ + F VA +V
Sbjct: 50 FRKNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIV 109
Query: 61 EGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALP 119
+GV+KL ++ ++E +A+ +F+A+A D R +L+KLADRLHNM TL A+P
Sbjct: 110 DGVTKLKKVKYRSKEEQ------QAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMP 163
Query: 120 LCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSS--KLVECFDEA 177
K+ R ++ETLEI+ PLA+RLGI+T K +LE+ ++++ Q+ + + K EA
Sbjct: 164 REKQIRISRETLEIYAPLAHRLGINTIKWELEDTALRYIDNVQYFRIVNLMKKKRSEREA 223
Query: 178 MVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENE 237
+ +AI+++ + NI + GR K +YSI+ KM+K+K D+I D+ +R+IV +
Sbjct: 224 YIETAIDRIRTEMDRMNIEGDI-NGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVNSI 282
Query: 238 EDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQ 297
DCY L +VH LW +PG+ KDYI PK N YQSLHT V G PLE+QIRT +MH
Sbjct: 283 NDCYAILGLVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEI 342
Query: 298 AEFGFAAHWRYKEG 311
AE G AAHW YKEG
Sbjct: 343 AEHGVAAHWAYKEG 356
>sp|P0A0E9|RELA_STAAW GTP pyrophosphokinase OS=Staphylococcus aureus (strain MW2) GN=relA
PE=3 SV=1
Length = 736
Score = 244 bits (624), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 129/314 (41%), Positives = 195/314 (62%), Gaps = 10/314 (3%)
Query: 1 MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLV 60
R +G PY++H ++ A +L + + + AG LHD ++D +++ + F VA +V
Sbjct: 50 FRKNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIV 109
Query: 61 EGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALP 119
+GV+KL ++ ++E +A+ +F+A+A D R +L+KLADRLHNM TL A+P
Sbjct: 110 DGVTKLKKVKYRSKEEQ------QAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMP 163
Query: 120 LCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSS--KLVECFDEA 177
K+ R ++ETLEI+ PLA+RLGI+T K +LE+ ++++ Q+ + + K EA
Sbjct: 164 REKQIRISRETLEIYAPLAHRLGINTIKWELEDTALRYIDNVQYFRIVNLMKKKRSEREA 223
Query: 178 MVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENE 237
+ +AI+++ + NI + GR K +YSI+ KM+K+K D+I D+ +R+IV +
Sbjct: 224 YIETAIDRIRTEMDRMNIEGDI-NGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVNSI 282
Query: 238 EDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQ 297
DCY L +VH LW +PG+ KDYI PK N YQSLHT V G PLE+QIRT +MH
Sbjct: 283 NDCYAILGLVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEI 342
Query: 298 AEFGFAAHWRYKEG 311
AE G AAHW YKEG
Sbjct: 343 AEHGVAAHWAYKEG 356
>sp|P0A0F0|RELA_STAAU GTP pyrophosphokinase OS=Staphylococcus aureus GN=relA PE=3 SV=1
Length = 736
Score = 244 bits (624), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 129/314 (41%), Positives = 195/314 (62%), Gaps = 10/314 (3%)
Query: 1 MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLV 60
R +G PY++H ++ A +L + + + AG LHD ++D +++ + F VA +V
Sbjct: 50 FRKNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIV 109
Query: 61 EGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALP 119
+GV+KL ++ ++E +A+ +F+A+A D R +L+KLADRLHNM TL A+P
Sbjct: 110 DGVTKLKKVKYRSKEEQ------QAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMP 163
Query: 120 LCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSS--KLVECFDEA 177
K+ R ++ETLEI+ PLA+RLGI+T K +LE+ ++++ Q+ + + K EA
Sbjct: 164 REKQIRISRETLEIYAPLAHRLGINTIKWELEDTALRYIDNVQYFRIVNLMKKKRSEREA 223
Query: 178 MVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENE 237
+ +AI+++ + NI + GR K +YSI+ KM+K+K D+I D+ +R+IV +
Sbjct: 224 YIETAIDRIRTEMDRMNIEGDI-NGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVNSI 282
Query: 238 EDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQ 297
DCY L +VH LW +PG+ KDYI PK N YQSLHT V G PLE+QIRT +MH
Sbjct: 283 NDCYAILGLVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEI 342
Query: 298 AEFGFAAHWRYKEG 311
AE G AAHW YKEG
Sbjct: 343 AEHGVAAHWAYKEG 356
>sp|Q6G8T5|RELA_STAAS GTP pyrophosphokinase OS=Staphylococcus aureus (strain MSSA476)
GN=relA PE=3 SV=1
Length = 736
Score = 244 bits (624), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 129/314 (41%), Positives = 195/314 (62%), Gaps = 10/314 (3%)
Query: 1 MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLV 60
R +G PY++H ++ A +L + + + AG LHD ++D +++ + F VA +V
Sbjct: 50 FRKNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIV 109
Query: 61 EGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALP 119
+GV+KL ++ ++E +A+ +F+A+A D R +L+KLADRLHNM TL A+P
Sbjct: 110 DGVTKLKKVKYRSKEEQ------QAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMP 163
Query: 120 LCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSS--KLVECFDEA 177
K+ R ++ETLEI+ PLA+RLGI+T K +LE+ ++++ Q+ + + K EA
Sbjct: 164 REKQIRISRETLEIYAPLAHRLGINTIKWELEDTALRYIDNVQYFRIVNLMKKKRSEREA 223
Query: 178 MVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENE 237
+ +AI+++ + NI + GR K +YSI+ KM+K+K D+I D+ +R+IV +
Sbjct: 224 YIETAIDRIRTEMDRMNIEGDI-NGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVNSI 282
Query: 238 EDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQ 297
DCY L +VH LW +PG+ KDYI PK N YQSLHT V G PLE+QIRT +MH
Sbjct: 283 NDCYAILGLVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEI 342
Query: 298 AEFGFAAHWRYKEG 311
AE G AAHW YKEG
Sbjct: 343 AEHGVAAHWAYKEG 356
>sp|Q99TL8|RELA_STAAN GTP pyrophosphokinase OS=Staphylococcus aureus (strain N315)
GN=relA PE=1 SV=2
Length = 736
Score = 244 bits (624), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 129/314 (41%), Positives = 195/314 (62%), Gaps = 10/314 (3%)
Query: 1 MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLV 60
R +G PY++H ++ A +L + + + AG LHD ++D +++ + F VA +V
Sbjct: 50 FRKNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIV 109
Query: 61 EGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALP 119
+GV+KL ++ ++E +A+ +F+A+A D R +L+KLADRLHNM TL A+P
Sbjct: 110 DGVTKLKKVKYRSKEEQ------QAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMP 163
Query: 120 LCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSS--KLVECFDEA 177
K+ R ++ETLEI+ PLA+RLGI+T K +LE+ ++++ Q+ + + K EA
Sbjct: 164 REKQIRISRETLEIYAPLAHRLGINTIKWELEDTALRYIDNVQYFRIVNLMKKKRSEREA 223
Query: 178 MVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENE 237
+ +AI+++ + NI + GR K +YSI+ KM+K+K D+I D+ +R+IV +
Sbjct: 224 YIETAIDRIRTEMDRMNIEGDI-NGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVNSI 282
Query: 238 EDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQ 297
DCY L +VH LW +PG+ KDYI PK N YQSLHT V G PLE+QIRT +MH
Sbjct: 283 NDCYAILGLVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEI 342
Query: 298 AEFGFAAHWRYKEG 311
AE G AAHW YKEG
Sbjct: 343 AEHGVAAHWAYKEG 356
>sp|Q931Q4|RELA_STAAM GTP pyrophosphokinase OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=relA PE=3 SV=2
Length = 736
Score = 242 bits (618), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 128/314 (40%), Positives = 194/314 (61%), Gaps = 10/314 (3%)
Query: 1 MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLV 60
R +G PY++H ++ A +L + + + AG LHD ++D +++ + F VA +V
Sbjct: 50 FRKNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIV 109
Query: 61 EGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALP 119
+GV+KL ++ ++E +A+ +F+A+A D R +L+KLADRLHNM TL A+P
Sbjct: 110 DGVTKLKKVKYRSKEEQ------QAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMP 163
Query: 120 LCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSS--KLVECFDEA 177
K+ R ++ETLEI+ PLA+ LGI+T K +LE+ ++++ Q+ + + K EA
Sbjct: 164 REKQIRISRETLEIYAPLAHHLGINTIKWELEDTALRYIDNVQYFRIVNLMKKKRSEREA 223
Query: 178 MVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENE 237
+ +AI+++ + NI + GR K +YSI+ KM+K+K D+I D+ +R+IV +
Sbjct: 224 YIETAIDRIRTEMDRMNIEGDI-NGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVNSI 282
Query: 238 EDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQ 297
DCY L +VH LW +PG+ KDYI PK N YQSLHT V G PLE+QIRT +MH
Sbjct: 283 NDCYAILGLVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEI 342
Query: 298 AEFGFAAHWRYKEG 311
AE G AAHW YKEG
Sbjct: 343 AEHGVAAHWAYKEG 356
>sp|Q8YG65|RSH_BRUME GTP pyrophosphokinase rsh OS=Brucella melitensis biotype 1 (strain
16M / ATCC 23456 / NCTC 10094) GN=rsh PE=1 SV=2
Length = 750
Score = 238 bits (606), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 124/313 (39%), Positives = 193/313 (61%), Gaps = 12/313 (3%)
Query: 2 RASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVE 61
RASGDPY H +E A +L + + +A LLHDT++D + I + FG + LVE
Sbjct: 39 RASGDPYFSHPLEVAAILTDMHLDEATIAIALLHDTIEDTTATRQEIDQLFGPEIGKLVE 98
Query: 62 GVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPL 120
G++KL +L +++ K V+A+ L + LA++ D R +L+KLADRLHNM TL +
Sbjct: 99 GLTKLKKLDLVSK------KAVQAENLRKLLLAISEDVRVLLVKLADRLHNMRTLGVMRE 152
Query: 121 CKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVT 180
KR R A+ET++I+ PLA R+G+ + +LE L F+++NPD ++ +L E ++
Sbjct: 153 DKRLRIAEETMDIYAPLAGRMGMQDMREELEELAFRYINPDAWRAVTDRLAELLEKN--R 210
Query: 181 SAIEKLEQALKD---KNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENE 237
++K+E L + KN + R K +S+ KM K L+ +++ DI+G R++V+
Sbjct: 211 GLLQKIETDLSEIFEKNGIKASVKSRQKKPWSVFRKMESKGLSFEQLSDIFGFRVMVDTV 270
Query: 238 EDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQ 297
+DCY+AL ++H W+ VPG+ KDYI+ PK N Y+S+HT + G +E+QIRT+EM
Sbjct: 271 QDCYRALGLIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEI 330
Query: 298 AEFGFAAHWRYKE 310
AEFG AAH YK+
Sbjct: 331 AEFGVAAHSIYKD 343
>sp|A5VPI9|RSH_BRUO2 GTP pyrophosphokinase rsh OS=Brucella ovis (strain ATCC 25840 /
63/290 / NCTC 10512) GN=rsh PE=3 SV=1
Length = 750
Score = 237 bits (605), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 124/313 (39%), Positives = 193/313 (61%), Gaps = 12/313 (3%)
Query: 2 RASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVE 61
RASGDPY H +E A +L + + +A LLHDT++D + I + FG + LVE
Sbjct: 39 RASGDPYFSHPLEVAAILTDMHLDEATIAIALLHDTIEDTTATRQEIDQLFGPEIGKLVE 98
Query: 62 GVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPL 120
G++KL +L +++ K V+A+ L + LA++ D R +L+KLADRLHNM TL +
Sbjct: 99 GLTKLKKLDLVSK------KAVQAENLRKLLLAISEDVRVLLVKLADRLHNMRTLGVMRE 152
Query: 121 CKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVT 180
KR R A+ET++I+ PLA R+G+ + +LE L F+++NPD ++ +L E ++
Sbjct: 153 DKRLRIAEETMDIYAPLAGRMGMQDMREELEELAFRYINPDAWRAVTDRLAELLEKN--R 210
Query: 181 SAIEKLEQALKD---KNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENE 237
++K+E L + KN + R K +S+ KM K L+ +++ DI+G R++V+
Sbjct: 211 GLLQKIETDLSEIFEKNGIKASVKSRQKKPWSVFRKMETKGLSFEQLSDIFGFRVMVDTV 270
Query: 238 EDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQ 297
+DCY+AL ++H W+ VPG+ KDYI+ PK N Y+S+HT + G +E+QIRT+EM
Sbjct: 271 QDCYRALGLIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEI 330
Query: 298 AEFGFAAHWRYKE 310
AEFG AAH YK+
Sbjct: 331 AEFGVAAHSIYKD 343
>sp|Q57E90|RSH_BRUAB GTP pyrophosphokinase rsh OS=Brucella abortus biovar 1 (strain
9-941) GN=rsh PE=1 SV=1
Length = 750
Score = 237 bits (605), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 124/313 (39%), Positives = 193/313 (61%), Gaps = 12/313 (3%)
Query: 2 RASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVE 61
RASGDPY H +E A +L + + +A LLHDT++D + I + FG + LVE
Sbjct: 39 RASGDPYFSHPLEVAAILTDMHLDEATIAIALLHDTIEDTTATRQEIDQLFGPEIGKLVE 98
Query: 62 GVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPL 120
G++KL +L +++ K V+A+ L + LA++ D R +L+KLADRLHNM TL +
Sbjct: 99 GLTKLKKLDLVSK------KAVQAENLRKLLLAISEDVRVLLVKLADRLHNMRTLGVMRE 152
Query: 121 CKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVT 180
KR R A+ET++I+ PLA R+G+ + +LE L F+++NPD ++ +L E ++
Sbjct: 153 DKRLRIAEETMDIYAPLAGRMGMQDMREELEELAFRYINPDAWRAVTDRLAELLEKN--R 210
Query: 181 SAIEKLEQALKD---KNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENE 237
++K+E L + KN + R K +S+ KM K L+ +++ DI+G R++V+
Sbjct: 211 GLLQKIETDLSEIFEKNGIKASVKSRQKKPWSVFRKMETKGLSFEQLSDIFGFRVMVDTV 270
Query: 238 EDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQ 297
+DCY+AL ++H W+ VPG+ KDYI+ PK N Y+S+HT + G +E+QIRT+EM
Sbjct: 271 QDCYRALGLIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEI 330
Query: 298 AEFGFAAHWRYKE 310
AEFG AAH YK+
Sbjct: 331 AEFGVAAHSIYKD 343
>sp|Q2YN11|RSH_BRUA2 GTP pyrophosphokinase rsh OS=Brucella abortus (strain 2308) GN=rsh
PE=3 SV=1
Length = 750
Score = 237 bits (605), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 124/313 (39%), Positives = 193/313 (61%), Gaps = 12/313 (3%)
Query: 2 RASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVE 61
RASGDPY H +E A +L + + +A LLHDT++D + I + FG + LVE
Sbjct: 39 RASGDPYFSHPLEVAAILTDMHLDEATIAIALLHDTIEDTTATRQEIDQLFGPEIGKLVE 98
Query: 62 GVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPL 120
G++KL +L +++ K V+A+ L + LA++ D R +L+KLADRLHNM TL +
Sbjct: 99 GLTKLKKLDLVSK------KAVQAENLRKLLLAISEDVRVLLVKLADRLHNMRTLGVMRE 152
Query: 121 CKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVT 180
KR R A+ET++I+ PLA R+G+ + +LE L F+++NPD ++ +L E ++
Sbjct: 153 DKRLRIAEETMDIYAPLAGRMGMQDMREELEELAFRYINPDAWRAVTDRLAELLEKN--R 210
Query: 181 SAIEKLEQALKD---KNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENE 237
++K+E L + KN + R K +S+ KM K L+ +++ DI+G R++V+
Sbjct: 211 GLLQKIETDLSEIFEKNGIKASVKSRQKKPWSVFRKMETKGLSFEQLSDIFGFRVMVDTV 270
Query: 238 EDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQ 297
+DCY+AL ++H W+ VPG+ KDYI+ PK N Y+S+HT + G +E+QIRT+EM
Sbjct: 271 QDCYRALGLIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEI 330
Query: 298 AEFGFAAHWRYKE 310
AEFG AAH YK+
Sbjct: 331 AEFGVAAHSIYKD 343
>sp|Q8CY42|RSH_BRUSU GTP pyrophosphokinase rsh OS=Brucella suis biovar 1 (strain 1330)
GN=rsh PE=1 SV=1
Length = 750
Score = 236 bits (603), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 124/313 (39%), Positives = 193/313 (61%), Gaps = 12/313 (3%)
Query: 2 RASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVE 61
RASGDPY H +E A +L + + +A LLHDT++D + I + FG + LVE
Sbjct: 39 RASGDPYFSHPLEVAAILTDMHLDEATIAIALLHDTIEDTTATRQEIDQLFGPEIGKLVE 98
Query: 62 GVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPL 120
G++KL +L +++ K V+A+ L + LA++ D R +L+KLADRLHNM TL +
Sbjct: 99 GLTKLKKLDLVSK------KAVQAENLRKLLLAISEDVRVLLVKLADRLHNMRTLGVMCE 152
Query: 121 CKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVT 180
KR R A+ET++I+ PLA R+G+ + +LE L F+++NPD ++ +L E ++
Sbjct: 153 DKRLRIAEETMDIYAPLAGRMGMQDMREELEELAFRYINPDAWRAVTDRLAELLEKN--R 210
Query: 181 SAIEKLEQALKD---KNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENE 237
++K+E L + KN + R K +S+ KM K L+ +++ DI+G R++V+
Sbjct: 211 GLLQKIETDLSEIFEKNGIKASVKSRQKKPWSVFRKMETKGLSFEQLSDIFGFRVMVDTV 270
Query: 238 EDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQ 297
+DCY+AL ++H W+ VPG+ KDYI+ PK N Y+S+HT + G +E+QIRT+EM
Sbjct: 271 QDCYRALGLIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEI 330
Query: 298 AEFGFAAHWRYKE 310
AEFG AAH YK+
Sbjct: 331 AEFGVAAHSIYKD 343
>sp|P43811|SPOT_HAEIN Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd) GN=spoT PE=3 SV=1
Length = 677
Score = 236 bits (602), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 142/351 (40%), Positives = 202/351 (57%), Gaps = 19/351 (5%)
Query: 1 MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLV 60
R+SG+PY+ H V A ++A + + V A LLHD ++D + + + FGA VA++V
Sbjct: 11 FRSSGEPYITHPVAVASIIAQLHLDHEAVMAALLHDVIEDTPYTEEQLKEEFGASVAEIV 70
Query: 61 EGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALP 119
+GVSKL +L R+ + + M LAM D R VLIKLADR HNM TL +L
Sbjct: 71 DGVSKLDKLKFRTRQE------AQVENFRKMILAMTRDIRVVLIKLADRTHNMRTLGSLR 124
Query: 120 LCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMV 179
KR+R AKETLEI+ PLA+RLGI K +LE+L F+ ++P ++ E+ KLV+ +
Sbjct: 125 PDKRRRIAKETLEIYCPLAHRLGIEHIKNELEDLSFQAMHPHRY-EVLKKLVDV-ARSNR 182
Query: 180 TSAIEKLEQALK---DKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVEN 236
IE++ Q +K + + F + GR K LY I+ KM K I DIY R+IV+N
Sbjct: 183 QDLIERISQEIKVRLENSGIFARVWGREKHLYKIYQKMRIKDQEFHSIMDIYAFRVIVKN 242
Query: 237 EEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHL 296
+DCY+ L +H L+ PG++KDYI PK NGYQSL T + G VP+EV I T++M
Sbjct: 243 VDDCYRVLGQMHNLYKPRPGRVKDYIAVPKANGYQSLQTSMIGPKGVPVEVHIHTEDMEQ 302
Query: 297 QAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNG 347
AE G AHW YKE S+ + RW+ +++ + + VGN
Sbjct: 303 VAEMGITAHWVYKENGKNDSTTA--QIRVQRWL-----QSLVEIQQSVGNS 346
>sp|Q9KNM2|SPOT_VIBCH Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Vibrio
cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba
N16961) GN=spoT PE=1 SV=1
Length = 705
Score = 232 bits (592), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 137/339 (40%), Positives = 198/339 (58%), Gaps = 11/339 (3%)
Query: 2 RASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVE 61
R+SG+PY++H V A +LA + + + A LLHD ++D ++ + + FG+ VA+LV+
Sbjct: 39 RSSGEPYIIHPVAVARILAEMRLDLETLQAALLHDVIEDCDVTKEDLDAHFGSSVAELVD 98
Query: 62 GVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPL 120
GVSKL +L R K +A+ M LAM D R +LIKLADR NM TL AL
Sbjct: 99 GVSKLDKLKFRDR------KEAQAENFRKMVLAMVQDIRVILIKLADRTPNMRTLGALRP 152
Query: 121 CKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSS--KLVECFDEAM 178
K++R A+ETLEI+ PLA+RLGI K +LE L F+ L P+++ L K + M
Sbjct: 153 DKKRRIARETLEIYAPLAHRLGIHNIKTELEELGFEALYPNRYRVLKEVVKAARGNRKEM 212
Query: 179 VTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEE 238
+ ++E L++ + V+ GR K+L+SI+ KM K+ I DIY R++V+ +
Sbjct: 213 IQRIHSEIEGRLQEVGLPARVV-GREKNLFSIYNKMKTKEQRFHTIMDIYAFRIVVDTAD 271
Query: 239 DCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQA 298
CY+ L VH L+ P +MKDYI PK NGYQSLHT + G VP+EVQIRT++M A
Sbjct: 272 TCYRVLGQVHSLYKPRPARMKDYIAVPKANGYQSLHTSMVGPHGVPVEVQIRTEDMDQMA 331
Query: 299 EFGFAAHWRYKEGDCQHSSFV-LQMVEWARWVLTWQCEA 336
+ G AAHW YK + + ++ W + +L Q A
Sbjct: 332 DKGVAAHWSYKANSERGGTTAQIKAQRWMQSLLELQQSA 370
>sp|O67012|SPOT_AQUAE Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Aquifex
aeolicus (strain VF5) GN=spoT PE=3 SV=1
Length = 696
Score = 230 bits (586), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 131/331 (39%), Positives = 199/331 (60%), Gaps = 18/331 (5%)
Query: 2 RASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVE 61
R +G+PY++H + A+ LA +G + + A LLHDTL+D +Y+ I FG VA LVE
Sbjct: 43 RKTGEPYIIHPLNVALKLAELGMDHETIIAALLHDTLEDTDTTYEEIKERFGERVAKLVE 102
Query: 62 GVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPL 120
GV+K+ ++ K+ +A+ + LA A D R +L+KL+DRL N+ TL
Sbjct: 103 GVTKIGKIK---------YKSEQAENYRKLILATAEDPRVILLKLSDRLDNVKTLWVFRE 153
Query: 121 CKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVEC---FDEA 177
KR++ AKET+EI+ PLA+RLG+ + K +LE+ FK+L P+++ ++ + + E +E
Sbjct: 154 EKRKKIAKETMEIYAPLAHRLGVWSIKNELEDWAFKYLYPEEYEKVRNFVKESRKNLEEY 213
Query: 178 MVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENE 237
+ I K+ + L+ I + R K YSI K +K + ++++HDI G+R+IV
Sbjct: 214 LRKYVIPKVRKELEKYGIEAEIKY-RSKHYYSIWEKTRRKGIRLEDVHDILGVRIIVNTV 272
Query: 238 EDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQ 297
+CY L ++H L+ VPGK KDYI+ PK N YQSLHT V + +E QIRT EMH +
Sbjct: 273 PECYTVLGIIHSLFRPVPGKFKDYISLPKPNLYQSLHTTVIADKGKLVEFQIRTWEMHER 332
Query: 298 AEFGFAAHWRYKEG----DCQHSSFVLQMVE 324
AE G A+HW YKEG D S++ ++VE
Sbjct: 333 AEKGIASHWAYKEGKNPSDAGVYSWLRELVE 363
>sp|O34098|SPOT_SPICI Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Spiroplasma citri GN=spoT PE=3 SV=1
Length = 749
Score = 229 bits (584), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 128/316 (40%), Positives = 195/316 (61%), Gaps = 11/316 (3%)
Query: 1 MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLV 60
+R SG Y++H + T LA + AGLLHD L+D +++ + FG +A+LV
Sbjct: 42 VRNSGARYIIHPLWTTFFLAQWRMGPKTLIAGLLHDVLEDTPATFEELQELFGIEIANLV 101
Query: 61 EGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALP 119
EGV+K+S A+EN T ++A L ++L+MA D R +++KLADRLHN+ T+ L
Sbjct: 102 EGVTKVSYF---AKENRTQ---IKAQYLRKLYLSMAKDIRVIIVKLADRLHNLKTIGYLK 155
Query: 120 LCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFD---E 176
++Q A+E+LEI+ +A+RLG+ K ++E++ FK +NP Q+ ++ S L+E + E
Sbjct: 156 PERQQIIARESLEIYSAIAHRLGMKAVKQEIEDISFKIINPVQYNKIVS-LLESSNKERE 214
Query: 177 AMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVEN 236
+ IE+L++ L + + + GR KS+YSI+ KM + D+IHDI +R+I +
Sbjct: 215 NTINQKIEELKKILITEKKMSVKVYGRSKSIYSIYRKMNQFGKNFDDIHDILAVRIITNS 274
Query: 237 EEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHL 296
+DCY+ L VHQ + + + KDYI PK N YQSLHT + + + EVQIRT+EM
Sbjct: 275 VDDCYKVLGFVHQHYTPLNNRFKDYIATPKHNLYQSLHTTIVADDGLIFEVQIRTEEMDE 334
Query: 297 QAEFGFAAHWRYKEGD 312
AE G AAHWRYKEG+
Sbjct: 335 LAEQGVAAHWRYKEGE 350
>sp|O51216|SPOT_BORBU Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP
102532 / DSM 4680) GN=spoT PE=3 SV=1
Length = 667
Score = 228 bits (580), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 189/333 (56%), Gaps = 14/333 (4%)
Query: 2 RASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVE 61
R SG+PY++H + ++ LA + AGLLHD L+D + + I + F + L++
Sbjct: 56 RESGEPYIIHPIMVSLFLAKFQLDFKATIAGLLHDVLEDTNVEKEEIVKEFDEEILSLID 115
Query: 62 GVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPL 120
GV+K+ L +N EA+ + MF AM D R ++IKLAD+LHNM TL LP
Sbjct: 116 GVTKIHDL------HNKTRSIKEANTISKMFFAMTHDIRIIIIKLADKLHNMTTLSYLPK 169
Query: 121 CKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECF--DEAM 178
++ R AK+ L +VP+A RLGIS+ K LE+L FKHL P + E+ + L E E
Sbjct: 170 NRQDRIAKDCLSTYVPIAERLGISSLKTYLEDLSFKHLYPKDYKEIKNFLSETKIEREKK 229
Query: 179 VTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEE 238
+ +E+ L+ I + R K YSI KM + + +I D G+R+I + ++
Sbjct: 230 LYKGKLSIEKELQKSGIEAEITV-RSKHFYSIFRKMQTRTNKLTQIFDTLGIRIICKKQK 288
Query: 239 DCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVV-TGEGLVPLEVQIRTKEMHLQ 297
+CY+ L +VH++W +PG++KDYI PK N YQSLHT V E +E+QIRT+EM
Sbjct: 289 ECYEILEIVHRVWKPIPGRLKDYIASPKENKYQSLHTTVRIPEDNQLIEIQIRTEEMDRI 348
Query: 298 AEFGFAAHWRYKEG---DCQHSSFVLQMVEWAR 327
A +G AAHW YKE SF+ ++ +W +
Sbjct: 349 ANYGVAAHWIYKEQIELKADDLSFINRIKKWQQ 381
>sp|P55133|RELA_PHOAS GTP pyrophosphokinase OS=Photobacterium angustum (strain S14 / CCUG
15956) GN=relA PE=3 SV=1
Length = 744
Score = 210 bits (534), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/327 (36%), Positives = 183/327 (55%), Gaps = 6/327 (1%)
Query: 14 ETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLA 73
E +L + ++ + A LL+ ++ S D + + + LV+GV ++ +S+L
Sbjct: 60 ELVEILVTLSMDADTLIAALLYPLVEGGCYSTDALKEEYSGTILHLVQGVEQMCAISQLK 119
Query: 74 RENNTASKTVEADRLHTMFLAMADA-RAVLIKLADRLHNMMTLDALPLCKRQRFAKETLE 132
++ + D + M L+M D R V+IKLA+R+ N+ + P R+ A+E
Sbjct: 120 STAEETAQAAQVDNIRRMLLSMVDDFRCVVIKLAERICNLREVKDQPDEVRRAAAQECAN 179
Query: 133 IFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVE--CFDEAMVTSAIEKLEQAL 190
I+ PLANRLGI K ++E+ F++ +PD + +++ +L E E +T ++ L A+
Sbjct: 180 IYAPLANRLGIGQLKWEIEDYAFRYQHPDTYKQIAKQLSERRIDREDYITHFVDDLSDAM 239
Query: 191 KDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQL 250
K NI V GR K +YSI KM KK L DE+ D+ +R++ E +DCY AL VVH
Sbjct: 240 KASNIRAEVQ-GRPKHIYSIWRKMQKKSLEFDELFDVRAVRIVAEELQDCYAALGVVHTK 298
Query: 251 WAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKE 310
+ +P + DY+ PK NGYQS+HTVV G +E+QIRTK+MH ++E G AAHW+YKE
Sbjct: 299 YRHLPKEFDDYVANPKPNGYQSIHTVVLGPEGKTIEIQIRTKQMHEESELGVAAHWKYKE 358
Query: 311 GDCQHS--SFVLQMVEWARWVLTWQCE 335
G S + + W R +L WQ E
Sbjct: 359 GTASGGAQSAYDEKINWLRKLLAWQEE 385
>sp|P0AG23|RELA_SHIFL GTP pyrophosphokinase OS=Shigella flexneri GN=relA PE=3 SV=1
Length = 744
Score = 203 bits (516), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 181/332 (54%), Gaps = 6/332 (1%)
Query: 9 LLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQ 68
L VE +L+ + + + A LL D +S D + + G V +L+ GV ++
Sbjct: 56 LWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAA 115
Query: 69 LSKLARENNTASKTVEADRLHTMFLAMADA-RAVLIKLADRLHNMMTLDALPLCKRQRFA 127
+ +L + + + + D + M LAM D R V+IKLA+R+ ++ + P +R A
Sbjct: 116 IRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAA 175
Query: 128 KETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVE--CFDEAMVTSAIEK 185
KE I+ PLANRLGI K +LE+ CF++L+P ++ ++ L E E + +
Sbjct: 176 KECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGH 235
Query: 186 LEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALR 245
L +K + + V GR K +YSI KM KK L DE+ D+ +R++ E +DCY AL
Sbjct: 236 LRAEMKAEGVKAEVY-GRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALG 294
Query: 246 VVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAH 305
+VH + +P + DY+ PK NGYQS+HTVV G G +E+QIRTK+MH AE G AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAH 354
Query: 306 WRYKEGDCQHS--SFVLQMVEWARWVLTWQCE 335
W+YKEG S + W R ++ WQ E
Sbjct: 355 WKYKEGAAAGGARSGHEDRIAWLRKLIAWQEE 386
>sp|P0AG20|RELA_ECOLI GTP pyrophosphokinase OS=Escherichia coli (strain K12) GN=relA PE=1
SV=1
Length = 744
Score = 203 bits (516), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 181/332 (54%), Gaps = 6/332 (1%)
Query: 9 LLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQ 68
L VE +L+ + + + A LL D +S D + + G V +L+ GV ++
Sbjct: 56 LWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAA 115
Query: 69 LSKLARENNTASKTVEADRLHTMFLAMADA-RAVLIKLADRLHNMMTLDALPLCKRQRFA 127
+ +L + + + + D + M LAM D R V+IKLA+R+ ++ + P +R A
Sbjct: 116 IRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAA 175
Query: 128 KETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVE--CFDEAMVTSAIEK 185
KE I+ PLANRLGI K +LE+ CF++L+P ++ ++ L E E + +
Sbjct: 176 KECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGH 235
Query: 186 LEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALR 245
L +K + + V GR K +YSI KM KK L DE+ D+ +R++ E +DCY AL
Sbjct: 236 LRAEMKAEGVKAEVY-GRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALG 294
Query: 246 VVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAH 305
+VH + +P + DY+ PK NGYQS+HTVV G G +E+QIRTK+MH AE G AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAH 354
Query: 306 WRYKEGDCQHS--SFVLQMVEWARWVLTWQCE 335
W+YKEG S + W R ++ WQ E
Sbjct: 355 WKYKEGAAAGGARSGHEDRIAWLRKLIAWQEE 386
>sp|P0AG21|RELA_ECOL6 GTP pyrophosphokinase OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=relA PE=3 SV=1
Length = 744
Score = 203 bits (516), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 181/332 (54%), Gaps = 6/332 (1%)
Query: 9 LLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQ 68
L VE +L+ + + + A LL D +S D + + G V +L+ GV ++
Sbjct: 56 LWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAA 115
Query: 69 LSKLARENNTASKTVEADRLHTMFLAMADA-RAVLIKLADRLHNMMTLDALPLCKRQRFA 127
+ +L + + + + D + M LAM D R V+IKLA+R+ ++ + P +R A
Sbjct: 116 IRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAA 175
Query: 128 KETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVE--CFDEAMVTSAIEK 185
KE I+ PLANRLGI K +LE+ CF++L+P ++ ++ L E E + +
Sbjct: 176 KECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGH 235
Query: 186 LEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALR 245
L +K + + V GR K +YSI KM KK L DE+ D+ +R++ E +DCY AL
Sbjct: 236 LRAEMKAEGVKAEVY-GRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALG 294
Query: 246 VVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAH 305
+VH + +P + DY+ PK NGYQS+HTVV G G +E+QIRTK+MH AE G AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAH 354
Query: 306 WRYKEGDCQHS--SFVLQMVEWARWVLTWQCE 335
W+YKEG S + W R ++ WQ E
Sbjct: 355 WKYKEGAAAGGARSGHEDRIAWLRKLIAWQEE 386
>sp|P0AG22|RELA_ECO57 GTP pyrophosphokinase OS=Escherichia coli O157:H7 GN=relA PE=3 SV=1
Length = 744
Score = 203 bits (516), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 181/332 (54%), Gaps = 6/332 (1%)
Query: 9 LLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQ 68
L VE +L+ + + + A LL D +S D + + G V +L+ GV ++
Sbjct: 56 LWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAA 115
Query: 69 LSKLARENNTASKTVEADRLHTMFLAMADA-RAVLIKLADRLHNMMTLDALPLCKRQRFA 127
+ +L + + + + D + M LAM D R V+IKLA+R+ ++ + P +R A
Sbjct: 116 IRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAA 175
Query: 128 KETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVE--CFDEAMVTSAIEK 185
KE I+ PLANRLGI K +LE+ CF++L+P ++ ++ L E E + +
Sbjct: 176 KECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGH 235
Query: 186 LEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALR 245
L +K + + V GR K +YSI KM KK L DE+ D+ +R++ E +DCY AL
Sbjct: 236 LRAEMKAEGVKAEVY-GRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALG 294
Query: 246 VVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAH 305
+VH + +P + DY+ PK NGYQS+HTVV G G +E+QIRTK+MH AE G AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAH 354
Query: 306 WRYKEGDCQHS--SFVLQMVEWARWVLTWQCE 335
W+YKEG S + W R ++ WQ E
Sbjct: 355 WKYKEGAAAGGARSGHEDRIAWLRKLIAWQEE 386
>sp|P44644|RELA_HAEIN GTP pyrophosphokinase OS=Haemophilus influenzae (strain ATCC 51907
/ DSM 11121 / KW20 / Rd) GN=relA PE=3 SV=1
Length = 743
Score = 202 bits (514), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 117/327 (35%), Positives = 185/327 (56%), Gaps = 11/327 (3%)
Query: 13 VETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKL 72
VE +L + ++ + +L + + ++ + FGA + L++GV ++ + +L
Sbjct: 63 VEMVEILHELNMDAETLLTAMLFPIVANKLTDWESLKEKFGAKITKLLKGVLEMDNIRQL 122
Query: 73 ARENNTASKTVEADRLHTMFLAMADA-RAVLIKLADRLHNMMTLDALPLCKRQR---FAK 128
+ ++ ++ D + M LAM D R V+IKLA+R+ DA C + K
Sbjct: 123 NASH--SANALQVDNVRRMLLAMVDDFRCVIIKLAERI--TFLRDAEHRCAEEDKVLAVK 178
Query: 129 ETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVE--CFDEAMVTSAIEKL 186
E I+ PLANRLGI K +LE+ CF++L+P+Q+ ++ L E E + + +L
Sbjct: 179 ECSYIYAPLANRLGIGQLKWELEDYCFRYLHPEQYRAIAKLLQERRLDREHYIADFVSEL 238
Query: 187 EQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRV 246
L++ NI + + GR K +YSI KM KK L ++D+ +R+IV+ +DCY AL +
Sbjct: 239 SGYLRE-NIEQVEVYGRPKHIYSIWRKMQKKHLEFSGLYDVRAVRIIVQKLQDCYTALGI 297
Query: 247 VHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHW 306
VH + +P + DY+ PK NGYQS+HTVV G+G P+EVQIRT++MH AE G AAHW
Sbjct: 298 VHTQFKHLPKEFDDYVANPKPNGYQSIHTVVLGKGGKPIEVQIRTQQMHDDAELGMAAHW 357
Query: 307 RYKEGDCQHSSFVLQMVEWARWVLTWQ 333
+YKEG+ S + + W R +L WQ
Sbjct: 358 KYKEGNTGSMSAYEEKIAWLRKLLAWQ 384
>sp|P75386|SPOT_MYCPN Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129)
GN=spoT PE=3 SV=1
Length = 733
Score = 189 bits (480), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 111/312 (35%), Positives = 183/312 (58%), Gaps = 5/312 (1%)
Query: 2 RASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVE 61
R SG+P+ +H + TA+ L +S V AGLLHD ++D ++ + FG + DLV
Sbjct: 56 RLSGEPFFIHPLRTALRLVEWNMDSNTVCAGLLHDIIEDTQVTEADLTAIFGKEITDLVV 115
Query: 62 GVSKLSQLSKLARENNTASKTVEADRLHTMFLA-MADARAVLIKLADRLHNMMTLDALPL 120
V+K++ SK R+ N + + L + ++ + A+++KLADRL N+ +++ L +
Sbjct: 116 KVTKITSESKKQRQLNRKKEDLNLKSLVNIAMSSQQEVNALVLKLADRLDNISSIEFLAV 175
Query: 121 CKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVE--CFDEAM 178
K++ AKETLE++ +A R+G+ K QL +L FK L+P SK+ + F +
Sbjct: 176 EKQKIIAKETLELYAKIAGRIGMYPVKTQLADLSFKVLDPKNFNNTLSKINQQKVFYDNE 235
Query: 179 VTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEE 238
+ ++LE+ L+ I + L R K +YS + K+ + + +IHD++ +RLIV++E
Sbjct: 236 WGNFKKQLEEMLEQNQIEYR-LESRIKGIYSTYQKLTFHEQNIAKIHDLFAIRLIVKSEL 294
Query: 239 DCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQA 298
DCY L ++H + + KDYI PK N YQS+HT V +GL +E+QIRT+ M +
Sbjct: 295 DCYHLLGLIHLNFTVLMKHFKDYIASPKQNFYQSIHTTVRLKGL-NVEIQIRTQRMDHVS 353
Query: 299 EFGFAAHWRYKE 310
++GFA+HW YKE
Sbjct: 354 KYGFASHWIYKE 365
>sp|P47520|SPOT_MYCGE Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 /
NCTC 10195) GN=spoT PE=3 SV=1
Length = 720
Score = 172 bits (435), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 103/312 (33%), Positives = 175/312 (56%), Gaps = 5/312 (1%)
Query: 2 RASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVE 61
R SG+P+ +H + TA+ L + + AGLLHD ++D + I F +A+LV
Sbjct: 43 RLSGEPFFIHPLRTALSLVEWNMDPITICAGLLHDIIEDTDQTEANIAMIFSKEIAELVT 102
Query: 62 GVSKLSQLSKLARENNTASKTVEADRLHTMFL-AMADARAVLIKLADRLHNMMTLDALPL 120
V+K++ SK R + + + + + + +++KLADRL N+ +++ LP+
Sbjct: 103 KVTKITNESKKQRHLKNKKENLNLKSFVNIAINSQQEINVMVLKLADRLDNIASIEFLPI 162
Query: 121 CKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKL--VECFDEAM 178
K++ AKETLE++ +A R+G+ K +L +L FK L+ + SK+ + F +
Sbjct: 163 EKQKVIAKETLELYAKIAGRIGMYPVKTKLADLSFKVLDLKNYDNTLSKINKQKVFYDNE 222
Query: 179 VTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEE 238
+ ++L++ L I + L R K +YS + K+ + + +IHD++ +RLI ++E
Sbjct: 223 WDNFKQQLKKILAQNQIEY-QLESRIKGIYSTYKKLTVHEQNISKIHDLFAIRLITKSEL 281
Query: 239 DCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQA 298
DCY L ++H + KDYI PK N YQS+HT V +GL +E+QIRT++M +
Sbjct: 282 DCYHILGLIHLNFLIDSKYFKDYIASPKQNLYQSIHTTVRLKGL-NVEIQIRTQQMDNVS 340
Query: 299 EFGFAAHWRYKE 310
+FG A+HW YKE
Sbjct: 341 KFGLASHWIYKE 352
>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1
Length = 1179
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 139/309 (44%), Gaps = 22/309 (7%)
Query: 7 PYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKL 66
P +H + A+ L +S+ A LLH+ + L DY F + LV+ ++KL
Sbjct: 30 PDQIHTITKALQL-----DSSSFTAVLLHENIQHLNLE-DY--NHFNNNIIYLVDVINKL 81
Query: 67 SQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLD-ALPLCKRQR 125
S + A + + L A+L L LH + + Q
Sbjct: 82 STIHYKPY----AEQYIHFHELLLTINPKLQETAILTSLVPLLHKVSIFNLEYNNTNAQH 137
Query: 126 FAKETLEIFVP-LANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIE 184
++ ++P L + + L++LCFK P++ + + + + + + I
Sbjct: 138 ISEIITNCYIPYLLSYTAHNDLAYLLQDLCFKIQYPEERNRILHYMYWLYPD--IDNIIH 195
Query: 185 KLEQ----ALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDC 240
+EQ + NI L R KS YSI K L K + + ++DI R IV N++ C
Sbjct: 196 NIEQQFGNIFRKLNIK-ASLSYRIKSPYSIWIKTLVKDIHITALNDILAFRAIVPNKKAC 254
Query: 241 YQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEF 300
Y +++H + + + DYI PK NGYQS+H V++G +E+QIR+ MH Q ++
Sbjct: 255 YDVSKLIHLHYNTITSQFVDYIRYPKNNGYQSIHLVISGGNKGNIELQIRSTTMHRQTQY 314
Query: 301 GFAAHWRYK 309
G +AH YK
Sbjct: 315 G-SAHHTYK 322
>sp|Q568P1|MESH1_DANRE Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Danio rerio GN=hddc3 PE=2 SV=1
Length = 180
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 13/114 (11%)
Query: 5 GDPYLLHCVETAMLLAAIG--ANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEG 62
G PY+ H + A +L+ G + V+ A LLHDT++D +++ + FGA VA +V+G
Sbjct: 30 GTPYINHPIGVARILSHEGEITDVEVIQAALLHDTVEDTDTTFEELESVFGATVARIVQG 89
Query: 63 VSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLD 116
V+ L K RE R +A L+KLAD+L+N+ L+
Sbjct: 90 VTDDKSLPKAERE-----------RQQVEHAPHCSHQAKLVKLADKLYNLRDLN 132
>sp|P39583|YWAC_BACSU GTP pyrophosphokinase YwaC OS=Bacillus subtilis (strain 168)
GN=ywaC PE=1 SV=1
Length = 210
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 13/119 (10%)
Query: 202 GRHKSLYSIHCKMLKK------KLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVP 255
R KS SI K+++K K + IHDI G+R+I D Y + V+ Q
Sbjct: 57 SRVKSFESIVNKLMRKGCEITTKEMKEHIHDIAGVRIICSFISDIYNVVNVLKQHEDLRI 116
Query: 256 GKMKDYITRPKFNGYQSLHTVV-------TGEGLVPLEVQIRTKEMHLQAEFGFAAHWR 307
K+KDYI PK NGY+SLH ++ V E+QIRT M A +++
Sbjct: 117 VKVKDYIQTPKPNGYRSLHLIIEMPVNLTNRVEYVKAEIQIRTIAMDFWASLEHKIYYK 175
>sp|Q28C98|MESH1_XENTR Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Xenopus tropicalis GN=hddc3 PE=2 SV=1
Length = 179
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 13/111 (11%)
Query: 7 PYLLHCVETAMLLAAIGA--NSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVS 64
PY+ H + A +L+ G ++ V+ A LLHDT++D +++ I FG V ++VE V+
Sbjct: 31 PYINHPLGVARILSHEGGITDTAVLQAALLHDTVEDTNTTFEEIELHFGQDVRNIVEEVT 90
Query: 65 KLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTL 115
L K+ R+ RL +A L+KLAD+L+N+ L
Sbjct: 91 DDKTLPKMERK-----------RLQMEHAPHCSQKAKLVKLADKLYNLRDL 130
>sp|Q8N4P3|MESH1_HUMAN Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Homo sapiens GN=HDDC3 PE=1 SV=3
Length = 179
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 19/159 (11%)
Query: 4 SGDPYLLHCVETAMLLA--AIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVE 61
G PY+ H + A +L A + V+ A LLHDT++D + D + FGA V LVE
Sbjct: 28 EGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDTDTTLDEVELHFGAQVRRLVE 87
Query: 62 GVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLC 121
V+ L KL R+ RL + A L+KLAD+L+N+ L+ C
Sbjct: 88 EVTDDKTLPKLERK-----------RLQVEQAPHSSPGAKLVKLADKLYNLRDLNR---C 133
Query: 122 KRQRFAKETLEIFVPLANRL--GISTWKVQLENLCFKHL 158
+ +++ ++ + A ++ G+ QLE KHL
Sbjct: 134 TPEGWSEHRVQEYFEWAAQVVKGLQGTNRQLEE-ALKHL 171
>sp|Q9VAM9|MESH1_DROME Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Drosophila melanogaster GN=Mesh1 PE=1 SV=1
Length = 179
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 7 PYLLHCVETAMLLA--AIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVS 64
PY+ H + + +L+ A + V+ A LLHD ++D S++ + + FG V LV V+
Sbjct: 32 PYVNHVINVSTILSVEACITDEGVLMAALLHDVVEDTDASFEDVEKLFGPDVCGLVREVT 91
Query: 65 KLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTL 115
L K R+ RL A + RA LIKLAD+L N+ L
Sbjct: 92 DDKSLEKQERK-----------RLQIENAAKSSCRAKLIKLADKLDNLRDL 131
>sp|P29941|YCB8_PSEDE Uncharacterized 19.2 kDa protein in cobO 3'region OS=Pseudomonas
denitrificans PE=4 SV=1
Length = 175
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 8/113 (7%)
Query: 5 GDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVS 64
G PY++H + A ++ ++ ++AA LLHDT++D + I FG VA L V+
Sbjct: 34 GRPYIVHPIAVAEIVRSVPHTPEMIAAALLHDTVEDTDATLLEIKEAFGPKVATL---VA 90
Query: 65 KLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDA 117
L+ +S N K E DR H LA A A A +KLAD + N + + A
Sbjct: 91 WLTDISTPFHGNRQVRK--ELDRQH---LASAPAAAKTVKLADLIDNAIAIKA 138
>sp|Q9D114|MESH1_MOUSE Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Mus musculus GN=Hddc3 PE=2 SV=1
Length = 179
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Query: 4 SGDPYLLHCVETAMLLA--AIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVE 61
G PY+ H + A +L A + V+ A LLHDT++D + D + FGA V LVE
Sbjct: 28 EGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDTDTTLDEVELHFGAQVRRLVE 87
Query: 62 GVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLD 116
V+ L KL R+ + + A L+KLAD+L+N+ L+
Sbjct: 88 EVTDDKTLPKLERKRQQVEQA-----------PHSSPGAKLVKLADKLYNLRDLN 131
>sp|O31611|YJBM_BACSU GTP pyrophosphokinase YjbM OS=Bacillus subtilis (strain 168)
GN=yjbM PE=1 SV=1
Length = 211
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 200 LCGRHKSLYSIHCKMLKKKLTMDEI---HDIYGLRLIVENEEDCYQALRVVHQLWAEVPG 256
+ GR K + SI K +K + + EI DI GLR++ + +D ++
Sbjct: 43 VTGRVKPVASILEKARRKSIPLHEIETMQDIAGLRIMCQFVDDIQIVKEMLFARKDFTVV 102
Query: 257 KMKDYITRPKFNGYQSLHTVV-------TGEGLVPLEVQIRTKEMHLQAEFGFAAHWRY 308
+DYI K +GY+S H VV +GE V +E+QIRT M+ A + +++Y
Sbjct: 103 DQRDYIAEHKESGYRSYHLVVLYPLQTVSGEKHVLVEIQIRTLAMNFWATIEHSLNYKY 161
>sp|B3QPX3|SYP_CHLP8 Proline--tRNA ligase OS=Chlorobaculum parvum (strain NCIB 8327)
GN=proS PE=3 SV=1
Length = 481
Score = 36.2 bits (82), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 23/143 (16%)
Query: 358 SHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTS----------STVMDLLERAGR 407
+H+DD P+ + V + +++ DK V+ ST +D E
Sbjct: 270 AHSDDKGLVLPPKLASRQVVIIPILKGDKEEVRAHARFIAKALNKHGISTFVDDSENNSP 329
Query: 408 G--SSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLTEYREEI-- 463
G + + G P++ EL PR + + +C + D E T + D +TE EEI
Sbjct: 330 GWKFAEYELQGIPVRIELGPR----DIAEGKCIVARRDTFEKTEVLLDAEMTENIEEILN 385
Query: 464 ---QRMYERGLAV--SNTGPAVT 481
Q +YER L NT A T
Sbjct: 386 NIQQNLYERALQFRQDNTVEATT 408
>sp|P03303|POLG_HRV14 Genome polyprotein OS=Human rhinovirus 14 PE=1 SV=3
Length = 2179
Score = 33.5 bits (75), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 80/199 (40%), Gaps = 19/199 (9%)
Query: 9 LLHCVETAMLLAAIGANSTVVAAGL--LHDTLDDAFLSYDYIF---RTFGAGVADLVEGV 63
+L C+ + L G + V A + L ++ LS DYI R FG G D +
Sbjct: 968 ILRCIHGPIGLLTAGGSGYVCFADIRQLECIAEEQGLS-DYITGLGRAFGVGFTDQIS-- 1024
Query: 64 SKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKR 123
+K+++L ++A++ T ++ + + M A ++ + D L + AL C
Sbjct: 1025 TKVTELQEVAKDFLTT-------KVLSKVVKMVSALVIICRNHDDLVTVTATLALLGCDG 1077
Query: 124 Q--RFAKETLE--IFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMV 179
RF K + VP R W + + C + SKL+E ++
Sbjct: 1078 SPWRFLKMYISKHFQVPYIERQANDGWFRKFNDACNAAKGLEWIANKISKLIEWIKNKVL 1137
Query: 180 TSAIEKLEQALKDKNISFL 198
A EKLE K K + L
Sbjct: 1138 PQAKEKLEFCSKLKQLDIL 1156
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 180,012,676
Number of Sequences: 539616
Number of extensions: 7420332
Number of successful extensions: 17305
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 17158
Number of HSP's gapped (non-prelim): 65
length of query: 488
length of database: 191,569,459
effective HSP length: 121
effective length of query: 367
effective length of database: 126,275,923
effective search space: 46343263741
effective search space used: 46343263741
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)