Query 011341
Match_columns 488
No_of_seqs 333 out of 2222
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 00:16:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011341.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011341hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0317 SpoT Guanosine polypho 100.0 1E-134 3E-139 1096.2 34.7 424 1-469 42-477 (701)
2 PRK10872 relA (p)ppGpp synthet 100.0 2E-130 5E-135 1078.6 35.7 432 2-469 49-498 (743)
3 PRK11092 bifunctional (p)ppGpp 100.0 2E-127 5E-132 1057.7 36.5 427 1-469 38-476 (702)
4 TIGR00691 spoT_relA (p)ppGpp s 100.0 7E-121 1E-125 1008.7 38.0 426 1-469 13-450 (683)
5 KOG1157 Predicted guanosine po 100.0 1.6E-96 3E-101 738.8 31.2 451 1-469 92-543 (543)
6 PF13328 HD_4: HD domain; PDB: 100.0 6.2E-37 1.3E-41 281.6 5.4 140 1-144 13-153 (153)
7 cd05399 NT_Rel-Spo_like Nucleo 100.0 2.5E-30 5.4E-35 230.9 11.6 119 181-300 2-129 (129)
8 PF04607 RelA_SpoT: Region fou 100.0 8.4E-31 1.8E-35 229.0 7.4 108 202-311 1-114 (115)
9 COG2357 PpGpp synthetase catal 100.0 2.3E-28 4.9E-33 234.4 13.3 114 197-310 52-178 (231)
10 PF02824 TGS: TGS domain; Int 99.5 5.9E-15 1.3E-19 115.0 0.8 52 388-449 9-60 (60)
11 cd01669 TGS_Ygr210_C TGS_Ygr21 99.1 4.2E-11 9E-16 97.7 3.0 54 388-449 23-76 (76)
12 cd01666 TGS_DRG_C TGS_DRG_C: 99.0 1.1E-10 2.5E-15 94.8 3.4 55 388-449 17-75 (75)
13 cd01668 TGS_RelA_SpoT TGS_RelA 98.5 1.6E-07 3.4E-12 72.0 4.7 52 388-449 9-60 (60)
14 PRK09602 translation-associate 98.3 5.7E-07 1.2E-11 95.1 5.0 55 388-450 341-395 (396)
15 cd04938 TGS_Obg-like TGS_Obg-l 98.2 9.8E-07 2.1E-11 72.1 3.7 53 388-449 24-76 (76)
16 TIGR03276 Phn-HD phosphonate d 98.1 4E-06 8.8E-11 79.1 6.5 65 3-67 19-102 (179)
17 PRK00413 thrS threonyl-tRNA sy 97.8 2.4E-05 5.1E-10 87.7 6.7 80 388-477 10-98 (638)
18 cd01616 TGS The TGS domain, na 97.8 1.9E-05 4.2E-10 59.1 3.7 52 388-449 9-60 (60)
19 PRK05659 sulfur carrier protei 97.5 0.00027 5.8E-09 55.7 5.7 55 381-450 4-62 (66)
20 PRK06437 hypothetical protein; 97.4 0.00039 8.5E-09 55.4 6.0 59 381-451 6-64 (67)
21 cd01667 TGS_ThrRS_N TGS _ThrRS 97.4 0.00018 3.9E-09 54.1 3.9 52 388-449 9-60 (61)
22 cd00565 ThiS ThiaminS ubiquiti 97.4 0.00032 7E-09 55.2 5.3 52 388-451 7-62 (65)
23 PRK07440 hypothetical protein; 97.2 0.0009 2E-08 53.8 5.6 57 380-451 7-67 (70)
24 PRK07696 sulfur carrier protei 97.1 0.001 2.2E-08 53.0 5.0 52 388-451 8-64 (67)
25 TIGR01683 thiS thiamine biosyn 97.1 0.0012 2.5E-08 51.9 5.2 52 388-450 6-60 (64)
26 PRK01777 hypothetical protein; 97.0 0.0015 3.2E-08 55.7 5.6 57 388-449 19-75 (95)
27 PRK06944 sulfur carrier protei 97.0 0.0018 3.8E-08 50.8 5.7 51 388-450 8-61 (65)
28 PRK08053 sulfur carrier protei 96.9 0.0021 4.5E-08 50.9 5.8 57 381-451 4-63 (66)
29 COG2104 ThiS Sulfur transfer p 96.9 0.0022 4.8E-08 51.3 5.9 52 388-450 10-64 (68)
30 PTZ00258 GTP-binding protein; 96.9 0.00063 1.4E-08 71.9 3.6 55 388-449 316-386 (390)
31 PRK08364 sulfur carrier protei 96.9 0.0025 5.4E-08 51.1 5.7 51 389-451 17-67 (70)
32 PRK05863 sulfur carrier protei 96.9 0.0023 5E-08 50.5 5.4 52 388-450 8-61 (65)
33 COG1163 DRG Predicted GTPase [ 96.8 0.00074 1.6E-08 69.0 3.2 55 388-449 306-364 (365)
34 PRK12444 threonyl-tRNA synthet 96.7 0.003 6.5E-08 71.1 7.1 80 388-477 14-102 (639)
35 PRK09601 GTP-binding protein Y 96.7 0.0012 2.6E-08 69.1 3.2 56 387-448 291-361 (364)
36 PRK06083 sulfur carrier protei 96.4 0.0071 1.5E-07 50.4 5.4 58 380-451 21-81 (84)
37 PRK06488 sulfur carrier protei 96.3 0.008 1.7E-07 47.3 5.2 51 388-451 8-62 (65)
38 PLN02908 threonyl-tRNA synthet 96.2 0.0086 1.9E-07 68.0 7.1 85 377-475 52-146 (686)
39 PRK14707 hypothetical protein; 96.0 0.028 6.1E-07 68.6 10.0 107 199-311 2306-2424(2710)
40 PF14451 Ub-Mut7C: Mut7-C ubiq 95.4 0.022 4.8E-07 47.1 4.4 49 389-449 26-75 (81)
41 PLN02799 Molybdopterin synthas 95.3 0.027 5.8E-07 46.2 4.4 59 388-451 21-79 (82)
42 smart00471 HDc Metal dependent 95.3 0.032 7E-07 46.7 5.1 38 4-41 1-44 (124)
43 cd00754 MoaD Ubiquitin domain 95.2 0.027 5.8E-07 45.6 4.2 60 388-451 18-77 (80)
44 PF03658 Ub-RnfH: RnfH family 95.1 0.029 6.2E-07 46.8 4.1 52 388-449 16-72 (84)
45 PRK11840 bifunctional sulfur c 94.4 0.068 1.5E-06 55.1 5.8 51 388-449 8-61 (326)
46 PF02597 ThiS: ThiS family; I 94.3 0.034 7.3E-07 44.5 2.5 57 388-450 14-73 (77)
47 PF01966 HD: HD domain; Inter 93.3 0.11 2.4E-06 44.0 4.3 33 9-41 2-41 (122)
48 TIGR01682 moaD molybdopterin c 92.4 0.22 4.7E-06 40.6 4.5 58 388-450 18-76 (80)
49 COG2914 Uncharacterized protei 91.4 0.72 1.6E-05 39.2 6.5 64 389-458 20-86 (99)
50 PRK09169 hypothetical protein; 91.3 0.63 1.4E-05 58.2 8.6 121 185-311 1901-2034(2316)
51 cd00077 HDc Metal dependent ph 90.7 1.3 2.8E-05 37.6 7.8 35 7-41 2-44 (145)
52 PRK14707 hypothetical protein; 90.0 0.75 1.6E-05 57.0 7.5 195 108-310 2416-2654(2710)
53 PRK12703 tRNA 2'-O-methylase; 89.2 4.5 9.7E-05 42.3 11.7 133 6-154 186-331 (339)
54 TIGR01687 moaD_arch MoaD famil 87.6 1.1 2.3E-05 37.0 4.9 61 389-451 19-85 (88)
55 COG1418 Predicted HD superfami 87.5 1 2.2E-05 44.2 5.4 39 4-42 33-76 (222)
56 PRK11130 moaD molybdopterin sy 84.8 1.1 2.4E-05 36.6 3.6 58 390-450 19-77 (81)
57 COG4341 Predicted HD phosphohy 83.4 1.2 2.7E-05 41.5 3.5 34 4-37 25-60 (186)
58 PF06071 YchF-GTPase_C: Protei 82.8 0.76 1.6E-05 38.3 1.7 56 387-448 12-82 (84)
59 TIGR03401 cyanamide_fam HD dom 82.0 10 0.00022 37.5 9.6 105 7-125 55-180 (228)
60 COG0012 Predicted GTPase, prob 81.0 0.61 1.3E-05 49.0 0.7 47 388-445 320-366 (372)
61 PRK10119 putative hydrolase; P 78.0 8.7 0.00019 38.0 7.7 31 9-39 27-62 (231)
62 cd04867 TGS_YchF_C TGS_YchF_C: 77.8 2 4.3E-05 35.7 2.6 55 388-448 13-82 (83)
63 PRK03826 5'-nucleotidase; Prov 77.0 13 0.00028 35.9 8.4 95 6-113 27-142 (195)
64 PF12917 HD_2: HD containing h 74.0 6.3 0.00014 38.5 5.3 100 7-113 29-143 (215)
65 TIGR02988 YaaA_near_RecF S4 do 73.5 2.8 6E-05 32.1 2.3 24 424-447 35-58 (59)
66 cd01764 Urm1 Urm1-like ubuitin 71.5 7.9 0.00017 32.8 4.8 61 390-450 21-90 (94)
67 TIGR00277 HDIG uncharacterized 71.2 6.5 0.00014 30.7 4.1 35 5-39 2-41 (80)
68 COG1977 MoaD Molybdopterin con 69.8 3.2 6.9E-05 34.4 2.0 29 421-450 52-80 (84)
69 PF01479 S4: S4 domain; Inter 68.8 2.4 5.3E-05 30.7 1.0 22 424-445 27-48 (48)
70 COG1713 Predicted HD superfami 67.4 6.3 0.00014 37.7 3.7 37 6-42 16-57 (187)
71 COG1078 HD superfamily phospho 66.5 3.1 6.8E-05 44.7 1.6 30 9-38 53-96 (421)
72 PF13023 HD_3: HD domain; PDB: 65.9 17 0.00037 33.9 6.3 96 5-113 20-129 (165)
73 TIGR00488 putative HD superfam 65.8 6.6 0.00014 36.1 3.5 34 6-39 7-45 (158)
74 PRK00106 hypothetical protein; 65.0 7.1 0.00015 43.3 4.0 37 4-40 347-388 (535)
75 COG1896 Predicted hydrolases o 61.7 46 0.001 32.0 8.5 98 3-112 29-141 (193)
76 PF13510 Fer2_4: 2Fe-2S iron-s 59.8 9.5 0.00021 31.3 3.0 64 380-446 6-78 (82)
77 TIGR00295 conserved hypothetic 59.7 12 0.00026 34.8 4.0 57 6-62 12-86 (164)
78 PTZ00305 NADH:ubiquinone oxido 59.4 44 0.00095 34.3 8.2 66 379-447 70-142 (297)
79 PRK12705 hypothetical protein; 53.0 15 0.00032 40.6 4.0 36 5-40 321-361 (508)
80 smart00363 S4 S4 RNA-binding d 52.5 10 0.00022 27.4 1.9 26 424-449 27-52 (60)
81 PRK07569 bidirectional hydroge 52.4 84 0.0018 30.8 8.9 76 388-467 11-92 (234)
82 TIGR03319 YmdA_YtgF conserved 51.9 16 0.00034 40.5 4.0 32 8-39 330-366 (514)
83 PRK01286 deoxyguanosinetriphos 50.4 17 0.00036 38.1 3.7 31 8-38 63-98 (336)
84 PRK12704 phosphodiesterase; Pr 49.2 20 0.00043 39.7 4.3 34 6-39 334-372 (520)
85 PRK07152 nadD putative nicotin 49.0 17 0.00036 37.9 3.5 35 6-40 195-234 (342)
86 COG1188 Ribosome-associated he 48.9 12 0.00027 32.2 2.0 24 425-449 36-59 (100)
87 PF13275 S4_2: S4 domain; PDB: 47.6 9.9 0.00021 30.2 1.2 24 424-447 34-57 (65)
88 TIGR00092 GTP-binding protein 47.3 16 0.00035 38.6 3.1 55 388-448 296-365 (368)
89 cd08780 Death_TRADD Death Doma 47.2 84 0.0018 26.6 6.6 75 120-196 2-81 (90)
90 KOG1486 GTP-binding protein DR 46.4 14 0.00029 37.4 2.1 54 388-448 305-362 (364)
91 PRK11507 ribosome-associated p 45.8 16 0.00034 29.6 2.0 25 424-448 38-62 (70)
92 COG0079 HisC Histidinol-phosph 44.7 1.1E+02 0.0024 32.1 8.9 114 138-251 218-352 (356)
93 COG1034 NuoG NADH dehydrogenas 44.1 59 0.0013 37.3 7.0 75 381-467 5-90 (693)
94 TIGR01399 hrcV type III secret 43.8 2.6E+02 0.0057 32.2 12.0 128 16-155 455-594 (677)
95 cd08318 Death_NMPP84 Death dom 41.3 1E+02 0.0022 25.4 6.4 72 121-196 8-79 (86)
96 cd00165 S4 S4/Hsp/ tRNA synthe 41.3 21 0.00046 26.5 2.2 26 424-449 27-52 (70)
97 COG3383 Uncharacterized anaero 40.5 45 0.00098 38.5 5.3 86 378-470 6-96 (978)
98 TIGR03812 tyr_de_CO2_Arch tyro 39.9 1.9E+02 0.0041 29.6 9.6 72 178-249 292-372 (373)
99 PRK03007 deoxyguanosinetriphos 38.8 32 0.00069 37.2 3.7 31 9-39 72-107 (428)
100 COG1710 Uncharacterized protei 38.7 37 0.0008 30.2 3.4 55 178-232 61-123 (139)
101 PRK05318 deoxyguanosinetriphos 37.5 23 0.0005 38.3 2.5 31 9-39 60-106 (432)
102 PF14453 ThiS-like: ThiS-like 37.0 1.2E+02 0.0026 23.5 5.6 48 388-449 8-55 (57)
103 PF00498 FHA: FHA domain; Int 36.9 13 0.00029 28.5 0.4 25 423-447 42-67 (68)
104 PRK08493 NADH dehydrogenase su 36.8 1.1E+02 0.0025 35.9 8.0 81 380-467 4-88 (819)
105 PRK14136 recX recombination re 36.4 25 0.00054 36.3 2.3 99 152-254 166-271 (309)
106 PRK14137 recX recombination re 35.9 36 0.00079 32.8 3.3 103 147-253 39-147 (195)
107 KOG3220 Similar to bacterial d 34.8 1.3E+02 0.0029 29.5 6.8 85 15-135 17-104 (225)
108 PRK13480 3'-5' exoribonuclease 34.2 40 0.00086 35.0 3.5 31 8-38 160-196 (314)
109 COG2501 S4-like RNA binding pr 34.1 26 0.00056 28.6 1.6 25 424-448 38-62 (73)
110 TIGR00384 dhsB succinate dehyd 33.9 48 0.001 32.2 3.8 61 389-449 18-86 (220)
111 PRK12792 flhA flagellar biosyn 33.4 3.2E+02 0.0068 31.6 10.6 120 24-156 480-609 (694)
112 COG2316 Predicted hydrolase (H 33.2 44 0.00095 31.6 3.2 60 6-65 46-120 (212)
113 PRK15337 type III secretion sy 33.0 4.1E+02 0.0089 30.7 11.4 125 18-155 467-603 (686)
114 PRK13520 L-tyrosine decarboxyl 32.3 3.4E+02 0.0073 27.6 10.0 73 179-251 288-369 (371)
115 cd01806 Nedd8 Nebb8-like ubiq 30.0 1E+02 0.0022 23.9 4.6 66 377-450 3-72 (76)
116 KOG1487 GTP-binding protein DR 29.5 13 0.00028 37.7 -1.0 49 393-448 304-356 (358)
117 PF14907 NTP_transf_5: Unchara 27.5 5.5E+02 0.012 24.6 13.7 106 137-253 11-120 (249)
118 PRK12720 secretion system appa 27.4 2.6E+02 0.0056 32.2 8.6 193 18-233 453-666 (675)
119 PF00903 Glyoxalase: Glyoxalas 27.4 1.1E+02 0.0025 25.1 4.7 55 226-287 73-128 (128)
120 TIGR01353 dGTP_triPase deoxygu 27.2 38 0.00083 36.0 2.0 31 8-38 39-85 (381)
121 cd01809 Scythe_N Ubiquitin-lik 25.7 1.1E+02 0.0025 23.3 4.1 65 377-449 3-71 (72)
122 cd07235 MRD Mitomycin C resist 25.5 3.1E+02 0.0068 22.7 7.1 54 227-287 67-120 (122)
123 KOG1637 Threonyl-tRNA syntheta 25.5 44 0.00095 36.4 2.0 81 381-475 5-93 (560)
124 COG0466 Lon ATP-dependent Lon 25.2 7.8E+02 0.017 28.7 11.7 83 94-191 159-243 (782)
125 TIGR01017 rpsD_bact ribosomal 25.2 49 0.0011 31.9 2.2 25 425-449 117-141 (200)
126 PRK05327 rpsD 30S ribosomal pr 25.1 49 0.0011 32.0 2.1 25 425-449 120-144 (203)
127 TIGR01973 NuoG NADH-quinone ox 24.5 2.4E+02 0.0052 31.7 7.8 60 388-447 6-72 (603)
128 PF09371 Tex_N: Tex-like prote 24.0 6.5E+02 0.014 24.2 11.4 35 127-161 88-140 (193)
129 cd09011 Glo_EDI_BRP_like_23 Th 23.5 1.7E+02 0.0038 24.4 5.1 47 236-288 71-117 (120)
130 TIGR01398 FlhA flagellar biosy 23.5 7.9E+02 0.017 28.4 11.5 119 25-155 467-595 (678)
131 CHL00113 rps4 ribosomal protei 23.2 54 0.0012 31.8 2.0 25 425-449 116-140 (201)
132 PF13037 DUF3898: Domain of un 22.7 53 0.0012 27.6 1.6 23 377-402 55-77 (91)
133 PRK04926 dgt deoxyguanosinetri 22.5 53 0.0011 36.3 2.0 13 8-20 66-78 (503)
134 PRK09130 NADH dehydrogenase su 22.4 1.7E+02 0.0037 33.6 6.2 64 381-447 5-75 (687)
135 PF01121 CoaE: Dephospho-CoA k 22.4 51 0.0011 31.2 1.6 38 15-56 16-56 (180)
136 PF05153 DUF706: Family of unk 22.2 1.2E+02 0.0026 30.5 4.2 34 4-37 59-93 (253)
137 PRK01096 deoxyguanosinetriphos 21.9 79 0.0017 34.4 3.2 30 9-38 63-112 (440)
138 TIGR03069 PS_II_S4 photosystem 21.6 62 0.0013 32.5 2.2 25 424-448 209-233 (257)
139 PRK07860 NADH dehydrogenase su 21.6 1.7E+02 0.0036 34.3 6.0 82 380-466 7-94 (797)
140 PRK12577 succinate dehydrogena 21.2 1.2E+02 0.0027 31.4 4.3 51 389-440 22-77 (329)
141 COG2206 c-di-GMP phosphodieste 20.8 1E+02 0.0022 32.2 3.6 138 9-172 150-313 (344)
142 COG3019 Predicted metal-bindin 20.6 52 0.0011 30.2 1.3 45 240-286 39-88 (149)
143 cd08313 Death_TNFR1 Death doma 20.3 1.4E+02 0.003 24.7 3.6 53 134-186 14-67 (80)
144 PF04753 Corona_NS2: Coronavir 20.2 46 0.001 28.4 0.8 12 148-159 20-31 (109)
No 1
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=100.00 E-value=1.5e-134 Score=1096.18 Aligned_cols=424 Identities=42% Similarity=0.674 Sum_probs=399.7
Q ss_pred CCCCCcchhHHHHHHHHHHHHcCCCHHHHHHHhhhccccccCCCHHHHHhHhhHHHHHHHHHhccccccchHHhhccccc
Q 011341 1 MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTAS 80 (488)
Q Consensus 1 ~r~sG~Pyi~H~l~VA~iLa~lg~D~~~i~AALLHDvvEDt~~t~eel~~~FG~~Va~lV~~vTk~~~~~~~~r~~~~~~ 80 (488)
+|+||+|||.||++||.||+++++|.++++||||||++|||++|.++|++.||++|+.||+||||++.++.+. ..
T Consensus 42 ~r~SGePYi~Hpl~Va~iLael~~d~~tl~AaLLHD~vEDt~~t~e~i~~~FG~eVa~LV~GvTkl~~i~~~~-----~~ 116 (701)
T COG0317 42 TRKSGEPYISHPLEVAEILAELHMDMETLAAALLHDTIEDTPVTEELIEEIFGKEVAKLVEGVTKLKKIGQLS-----SE 116 (701)
T ss_pred cCcCCCchhhCHHHHHHHHHHccCCHHHHHHHHccchHhcCCCCHHHHHHHHCHHHHHHHhhHHHhhhhhccC-----cc
Confidence 4899999999999999999999999999999999999999999999999999999999999999999984221 12
Q ss_pred chHHHHHHHHHHhhcC-CchhhHHHHhhHHhhhccccCCChHHHHHHHHHHHHHhhhhhcccChhhHHHHHHhhhhhccC
Q 011341 81 KTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLN 159 (488)
Q Consensus 81 ~~~~~e~lRkmlla~~-D~rvvlIKLADRLhNmrtl~~~~~~k~~~~A~Etl~iyaPLA~rLGi~~ik~ELedl~f~~l~ 159 (488)
+..|+|++|||++||. |+||++||||||||||||+..+++++|+++|+||++|||||||||||+++|||||||||+||+
T Consensus 117 ~~~qaen~rkmllAm~~DiRvilIKLADRLhNmrtl~~~~~ek~~riakETl~IyAPLA~RLGi~~iK~ELEDlsFr~l~ 196 (701)
T COG0317 117 EELQAENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNLDEEKRRRIARETLDIYAPLAHRLGIGQIKWELEDLSFRYLH 196 (701)
T ss_pred chhHHHHHHHHHHHhccCccEEEeehhhhhhhcccCccCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhC
Confidence 3458999999999998 999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHhcCCceeeeeccccChHHHHHHHhhcCCCCCCCCcceEEEEEeCCh
Q 011341 160 PDQHTELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENE 237 (488)
Q Consensus 160 p~~y~~i~~~l~~~~--~~~~i~~~~~~l~~~L~~~gi~~~~v~~R~K~~~Si~~K~~rk~~~~~~i~Dl~giRIiv~~~ 237 (488)
|++|+.|.+.|.+.+ |++++++++..|++.|.++||+++ |+||+||+||||+||++|++.|++|+|++||||||++.
T Consensus 197 P~~Y~~I~~~l~e~r~~re~~i~~~~~~l~~~L~~~gi~a~-v~gR~KhiYSIyrKM~~k~~~f~~I~Dl~avRiIv~~~ 275 (701)
T COG0317 197 PDQYKRIAKLLDEKRLEREQYIENVVSELREELKAAGIKAE-VSGRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDTI 275 (701)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEE-EEcCCCcccHHHHHHHHcccChhhhhhheeEEEEECCh
Confidence 999999999998864 889999999999999999999996 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCcccCcccCCCCCCccceeEEEEcCCeeeEEEEEeehhhhHHHHhhhhhhcccccCCCCcch
Q 011341 238 EDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSS 317 (488)
Q Consensus 238 ~dcy~vl~~i~~~~~~~~~~~kDyI~~PK~nGYqSlH~~v~~~~g~~~EIQIRT~~mh~~Ae~g~aah~~YK~~~~~~~~ 317 (488)
.|||++||+||.+|+|+|+|||||||+||+||||||||+|.||.|.++||||||..||..||+|+||||+||++++
T Consensus 276 ~dCY~~LGiVH~~~kp~PgrFKDYIA~PK~NgYQSlHTtv~gp~g~~vEvQIRT~eMh~~AE~GvAAHW~YKe~~~---- 351 (701)
T COG0317 276 PDCYTALGIVHTLWKPIPGEFDDYIANPKPNGYQSLHTTVIGPEGKPVEVQIRTKEMHEIAELGVAAHWRYKEGGS---- 351 (701)
T ss_pred HHHHHHHHHHHhcCcCCCCccccccccCCCCCCceeEEEEECCCCceEEEEEecHHHHHHHhhhHHHHhHhhcCCc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCCCCCccCCCCCCCCCCCCCCCCCCcccCCCCCCCCCEEEEEEeCCcceEEecCCCCc
Q 011341 318 FVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSST 397 (488)
Q Consensus 318 ~~~~~~~wl~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vftp~~~~~~~i~v~~~~~~~~~~~~lp~GsT 397 (488)
...+...||++|++||++..+ +.+|++.+|.+ +|+ |+|||||||| ++++||.|||
T Consensus 352 ~~~~~~~Wlr~lle~q~~~~d----~~ef~e~~k~d-lf~----d~VyvfTPkG----------------~vi~LP~Gat 406 (701)
T COG0317 352 AYEEKIAWLRQLLEWQEESAD----SGEFLEQLKSD-LFP----DRVYVFTPKG----------------KVIDLPKGAT 406 (701)
T ss_pred hhhHHHHHHHHHHHHHHhcCC----cHHHHHHHhhc-ccC----ceEEEECCCC----------------CEEeCCCCCc
Confidence 346779999999999999877 57899999997 554 8999999996 7999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEee---CCCCccHHH------HHHHHHHHhh
Q 011341 398 VMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP---AIPDKSLTE------YREEIQRMYE 468 (488)
Q Consensus 398 ~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~---~~~~~~~~~------~~~~i~~~~~ 468 (488)
|+||||+|||++| ++|+||||||++|| |+++|++||+|||+| ..|+.+|++ +|.+|++||.
T Consensus 407 plDFAY~vHt~iG---------~~c~gAkVnG~ivp-l~~~Lk~Gd~VEIit~k~~~Ps~~Wl~~v~t~kAR~kIr~~~k 476 (701)
T COG0317 407 PLDFAYAVHTDIG---------HRCIGAKVNGRIVP-LTTKLQTGDQVEIITSKHAGPSRDWLNFVVTSRARAKIRAWFK 476 (701)
T ss_pred chhhhhhhhchhc---------ceeeEEEECCEEec-cceecCCCCEEEEEeCCCCCCCHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999975 79999999999995 999999999999999 568889995 4999999994
Q ss_pred h
Q 011341 469 R 469 (488)
Q Consensus 469 ~ 469 (488)
.
T Consensus 477 ~ 477 (701)
T COG0317 477 K 477 (701)
T ss_pred H
Confidence 4
No 2
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=100.00 E-value=2.4e-130 Score=1078.60 Aligned_cols=432 Identities=32% Similarity=0.547 Sum_probs=397.8
Q ss_pred CCCCcchhHHHHHHHHHHHHcCCCHHHHHHHhhhccccccCCCHHHHHhHhhHHHHHHHHHhccccccchHHhhcccccc
Q 011341 2 RASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASK 81 (488)
Q Consensus 2 r~sG~Pyi~H~l~VA~iLa~lg~D~~~i~AALLHDvvEDt~~t~eel~~~FG~~Va~lV~~vTk~~~~~~~~r~~~~~~~ 81 (488)
|+||+|||+||++||.||+++++|.++|+||||||++|||++|.++|++.||++||.||+||||++.+....+.......
T Consensus 49 r~sGepyi~Hpl~vA~iLa~~~~D~~ti~AaLLHD~vedt~~t~e~i~~~FG~~Va~lVdgvtKl~~i~~~~~~~~~~~~ 128 (743)
T PRK10872 49 HPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVNLIHGVRDMDAIRQLKATHNDSVS 128 (743)
T ss_pred CCCCChhhhhHHHHHHHHHHcCCCHHHHHHHHhhhhHhcCCCCHHHHHHHHCHHHHHHHHHHHHHHHhhhhhcccccchh
Confidence 78999999999999999999999999999999999999999999999999999999999999999988542211101123
Q ss_pred hHHHHHHHHHHhhcC-CchhhHHHHhhHHhhhccccCCChHHHHHHHHHHHHHhhhhhcccChhhHHHHHHhhhhhccCc
Q 011341 82 TVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNP 160 (488)
Q Consensus 82 ~~~~e~lRkmlla~~-D~rvvlIKLADRLhNmrtl~~~~~~k~~~~A~Etl~iyaPLA~rLGi~~ik~ELedl~f~~l~p 160 (488)
..|+|+||||||||+ |+||+||||||||||||||..+|++||+++|+||++|||||||||||++||||||||||+||+|
T Consensus 129 ~~qae~~RKmllam~~DiRVilIKLADRLhnmrTl~~~~~~kq~~iA~ETl~IyAPlA~RLGi~~iK~ELEDL~f~~l~P 208 (743)
T PRK10872 129 SEQVDNVRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHP 208 (743)
T ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCH
Confidence 458999999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHhcCCceeeeeccccChHHHHHHHhhcCCCCCCCCcceEEEEEeCChH
Q 011341 161 DQHTELSSKLVEC--FDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEE 238 (488)
Q Consensus 161 ~~y~~i~~~l~~~--~~~~~i~~~~~~l~~~L~~~gi~~~~v~~R~K~~~Si~~K~~rk~~~~~~i~Dl~giRIiv~~~~ 238 (488)
++|+.|++.|.+. .|+.+++.+++.|++.|.+.||+++ |+||+||+||||+||++|+.+|++|+|++|+||||+++.
T Consensus 209 ~~Y~~i~~~l~~~~~~r~~~i~~~~~~l~~~L~~~~i~~~-v~gR~K~~ySI~~Km~~k~~~~~~i~Di~a~RIIv~~~~ 287 (743)
T PRK10872 209 DEYKRIAKLLHERRIDREHYIEEFVGHLRAEMKAEGVKAE-VYGRPKHIYSIWRKMQKKSLAFDELFDVRAVRIVAERLQ 287 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE-EEeecCCHHHHHHHHHHcCCCHHHhccceeEEEEECCHH
Confidence 9999999999876 4788999999999999999999996 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCcccCcccCCCCCCccceeEEEEcCCeeeEEEEEeehhhhHHHHhhhhhhcccccCCCC--cc
Q 011341 239 DCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQ--HS 316 (488)
Q Consensus 239 dcy~vl~~i~~~~~~~~~~~kDyI~~PK~nGYqSlH~~v~~~~g~~~EIQIRT~~mh~~Ae~g~aah~~YK~~~~~--~~ 316 (488)
|||++||+||++|+|+|++|||||++||+||||||||+|.+|+|.++||||||..||.+||+|+||||+||++... ..
T Consensus 288 dCY~vLg~ih~~~~pip~~fkDYIa~PK~NGYqSLHttv~~~~g~~vEVQIRT~~Mh~~AE~GvAAHW~YKeg~~~~~~~ 367 (743)
T PRK10872 288 DCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTRQMHEDAELGVAAHWKYKEGAAAGGGR 367 (743)
T ss_pred HHHHHHHHHHhhccCCcchhhhcccCCCCCCcceeEEEEECCCCcEEEEEEEcHHHHHHHhhhHHHHHhccCCCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987532 11
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccCCCCCccCCCCCCCCCCCCCCCCCCcccCCCCCCCCCEEEEEEeCCcceEEecCCCC
Q 011341 317 SFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSS 396 (488)
Q Consensus 317 ~~~~~~~~wl~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vftp~~~~~~~i~v~~~~~~~~~~~~lp~Gs 396 (488)
...+++++||++|++||++..+ +.+|++.+|.+ +| .++||||||+| +++.||+||
T Consensus 368 ~~~~~~~~wLr~lle~~~~~~d----~~ef~e~~k~d-l~----~d~V~VfTPkG----------------~~~~Lp~ga 422 (743)
T PRK10872 368 SGHEDRIAWLRKLIAWQEEMAD----SGEMLDEVRSQ-VF----DDRVYVFTPKG----------------DVVDLPAGS 422 (743)
T ss_pred cchHHHHHHHHHHHHHHhccCC----HHHHHHHHHHH-hc----CCeEEEECCCC----------------CeEEcCCCC
Confidence 2345668999999999988554 56888999876 45 38899999996 699999999
Q ss_pred cHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEee---CCCCccHHH----------HHHHH
Q 011341 397 TVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP---AIPDKSLTE----------YREEI 463 (488)
Q Consensus 397 T~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~---~~~~~~~~~----------~~~~i 463 (488)
||+||||+|||++| ++|+||||||++|| ++++|++||+|||+| +.|+++|++ +|++|
T Consensus 423 T~lDfAy~iHt~iG---------~~~~gAkvng~~v~-l~~~L~~GD~VeIits~~~~Ps~dWL~~~lg~v~T~rAR~kI 492 (743)
T PRK10872 423 TPLDFAYHIHSDVG---------HRCIGAKIGGRIVP-FTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKI 492 (743)
T ss_pred cHHHHHHHHhHHHH---------hhceEEEECCEECC-CCcCCCCCCEEEEEeCCCCCCChhHhccccCeeeCHHHHHHH
Confidence 99999999999975 78999999999995 999999999999999 468999996 49999
Q ss_pred HHHhhh
Q 011341 464 QRMYER 469 (488)
Q Consensus 464 ~~~~~~ 469 (488)
++||..
T Consensus 493 r~~~k~ 498 (743)
T PRK10872 493 HAWFRK 498 (743)
T ss_pred HHHHHH
Confidence 999944
No 3
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=100.00 E-value=2.3e-127 Score=1057.66 Aligned_cols=427 Identities=37% Similarity=0.597 Sum_probs=396.0
Q ss_pred CCCCCcchhHHHHHHHHHHHHcCCCHHHHHHHhhhccccccCCCHHHHHhHhhHHHHHHHHHhccccccchHHhhccccc
Q 011341 1 MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTAS 80 (488)
Q Consensus 1 ~r~sG~Pyi~H~l~VA~iLa~lg~D~~~i~AALLHDvvEDt~~t~eel~~~FG~~Va~lV~~vTk~~~~~~~~r~~~~~~ 80 (488)
+|++|+||+.||++||.+|+++++|.++++||||||++|||++|.++|++.||++|+.+|+||||++.++.. .+
T Consensus 38 ~rksGePYi~Hpl~VA~iLa~l~~D~~ti~AaLLHDvvEDt~~t~e~i~~~FG~~Va~lV~gvTk~~~l~~~------~~ 111 (702)
T PRK11092 38 TRSSGEPYITHPVAVACILAEMRLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGVSKLDKLKFR------DK 111 (702)
T ss_pred cCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHhcccchhhhCCCCHHHHHHHHCHHHHHHHHHHHhhcccccc------ch
Confidence 478999999999999999999999999999999999999999999999999999999999999999887541 12
Q ss_pred chHHHHHHHHHHhhcC-CchhhHHHHhhHHhhhccccCCChHHHHHHHHHHHHHhhhhhcccChhhHHHHHHhhhhhccC
Q 011341 81 KTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLN 159 (488)
Q Consensus 81 ~~~~~e~lRkmlla~~-D~rvvlIKLADRLhNmrtl~~~~~~k~~~~A~Etl~iyaPLA~rLGi~~ik~ELedl~f~~l~ 159 (488)
+..|++++||||+||+ |+||++|||||||||||||..+|+++|+++|+||++||||||+||||++||||||||||+||+
T Consensus 112 ~~~q~e~~rkmllam~~DiRVvlIKLADRlhNmrtL~~~~~ek~~~iA~ETl~iyaPlA~rlGi~~ik~eLedL~f~~l~ 191 (702)
T PRK11092 112 KEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALY 191 (702)
T ss_pred hhHHHHHHHHHHHHhcCCCceEEEEHHHHHhhHHHHHhcCccHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhhC
Confidence 3458999999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHhcCCceeeeeccccChHHHHHHHhhcCCCCCCCCcceEEEEEeCCh
Q 011341 160 PDQHTELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENE 237 (488)
Q Consensus 160 p~~y~~i~~~l~~~~--~~~~i~~~~~~l~~~L~~~gi~~~~v~~R~K~~~Si~~K~~rk~~~~~~i~Dl~giRIiv~~~ 237 (488)
|++|+.|++.|.+.. ++++++.++..|++.|++.||+++ |++|+||+||||+||++|+.+|++|+|++|+||||++.
T Consensus 192 P~~y~~i~~~~~~~~~~r~~~i~~~~~~l~~~l~~~~i~~~-i~~R~K~~ySI~~Km~~k~~~~~~i~Di~a~Riiv~~~ 270 (702)
T PRK11092 192 PNRYRVIKEVVKAARGNRKEMIQKILSEIEGRLQEAGIPCR-VSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVDDS 270 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEE-EEeccCCHHHHHHHHHHcCCChhHhccceeEEEEECCH
Confidence 999999999998763 788999999999999999999996 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCcccCcccCCCCCCccceeEEEEcCCeeeEEEEEeehhhhHHHHhhhhhhcccccCCCCcch
Q 011341 238 EDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSS 317 (488)
Q Consensus 238 ~dcy~vl~~i~~~~~~~~~~~kDyI~~PK~nGYqSlH~~v~~~~g~~~EIQIRT~~mh~~Ae~g~aah~~YK~~~~~~~~ 317 (488)
.|||++||+||+.|+|+|++|||||++||+||||||||+|.+|+|.++||||||..||.+||+|+||||+||++......
T Consensus 271 ~dCY~~lg~ih~~~~pip~~~kDyIa~PK~NgYqSLHt~v~g~~g~~vEvQIRT~~Mh~~Ae~GvaAhW~yK~~~~~~~~ 350 (702)
T PRK11092 271 DTCYRVLGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGETGTT 350 (702)
T ss_pred HHHHHHHHHHHhcCCCCcCccccccCCCCCCCCceEEEEEECCCCcEEEEEEEcHHHHHHHhhhhHhhhhhccCCCccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987432122
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCCCCCccCCCCCCCCCCCCCCCCCCcccCCCCCCCCCEEEEEEeCCcceEEecCCCCc
Q 011341 318 FVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSST 397 (488)
Q Consensus 318 ~~~~~~~wl~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vftp~~~~~~~i~v~~~~~~~~~~~~lp~GsT 397 (488)
...+.++||+++++||++..+ +.+|++.++.+ +| +|+||||||+| +++.||+|||
T Consensus 351 ~~~~~~~wlr~ll~~~~~~~~----~~ef~~~~~~d-l~----~d~v~VfTP~G----------------~v~~LP~GaT 405 (702)
T PRK11092 351 AQIRAQRWMQSLLELQQSAGS----SFEFIESVKSD-LF----PDEIYVFTPEG----------------RIVELPAGAT 405 (702)
T ss_pred hHHHHHHHHHHHHHHHhhcCC----hHHHHHHHHhh-hc----cceEEEECCCC----------------CEEeCCCCCc
Confidence 233448999999999987654 56889999876 45 48999999996 7999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEee---CCCCccHHH------HHHHHHHHhh
Q 011341 398 VMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP---AIPDKSLTE------YREEIQRMYE 468 (488)
Q Consensus 398 ~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~---~~~~~~~~~------~~~~i~~~~~ 468 (488)
|+||||+|||++| ++|+||||||++|| |+|+|++||+|||+| +.|+.+|++ +|++|++||.
T Consensus 406 ~lDFAY~iHt~iG---------~~c~gAkVNg~~vp-L~~~L~~Gd~VeIiT~~~~~P~~dWL~~v~T~rAr~kIr~~~r 475 (702)
T PRK11092 406 PVDFAYAVHTDIG---------HACVGARVDRQPYP-LSQPLTSGQTVEIITAPGARPNAAWLNFVVSSKARAKIRQLLK 475 (702)
T ss_pred hhhhhHhhCchhh---------ceeEEEEECCEECC-CCccCCCCCEEEEEeCCCCCCChHHHHHhhhHHHHHHHHHHHH
Confidence 9999999999975 79999999999995 999999999999999 348999995 4999999994
Q ss_pred h
Q 011341 469 R 469 (488)
Q Consensus 469 ~ 469 (488)
.
T Consensus 476 ~ 476 (702)
T PRK11092 476 N 476 (702)
T ss_pred h
Confidence 3
No 4
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=100.00 E-value=6.6e-121 Score=1008.72 Aligned_cols=426 Identities=40% Similarity=0.661 Sum_probs=396.2
Q ss_pred CCCCCcchhHHHHHHHHHHHHcCCCHHHHHHHhhhccccccCCCHHHHHhHhhHHHHHHHHHhccccccchHHhhccccc
Q 011341 1 MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTAS 80 (488)
Q Consensus 1 ~r~sG~Pyi~H~l~VA~iLa~lg~D~~~i~AALLHDvvEDt~~t~eel~~~FG~~Va~lV~~vTk~~~~~~~~r~~~~~~ 80 (488)
+|++|+||+.||++||.+|+++|+|.++++||||||++|||++|.++|++.||++|+.+|++|||++.++... +
T Consensus 13 ~rksg~PYi~Hpl~VA~iL~~~~~D~~~i~AaLLHDvvEDt~~t~e~i~~~FG~~Va~lV~~vTk~~~~~~~~------~ 86 (683)
T TIGR00691 13 KRKSGEPYIIHPLAVALILAELGMDEETVCAALLHDVIEDTPVTEEEIEEEFGEEVAELVDGVTKITKLKKKS------R 86 (683)
T ss_pred cCCCCCcHHHHHHHHHHHHHHhCCCHHHHHHHhccchHhcCCCCHHHHHHHHCHHHHHHHHHHHHhcccccch------h
Confidence 4789999999999999999999999999999999999999999999999999999999999999999876421 2
Q ss_pred chHHHHHHHHHHhhcC-CchhhHHHHhhHHhhhccccCCChHHHHHHHHHHHHHhhhhhcccChhhHHHHHHhhhhhccC
Q 011341 81 KTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLN 159 (488)
Q Consensus 81 ~~~~~e~lRkmlla~~-D~rvvlIKLADRLhNmrtl~~~~~~k~~~~A~Etl~iyaPLA~rLGi~~ik~ELedl~f~~l~ 159 (488)
+..|++++|+||++|+ |+||++|||||||||||+|..+|+++|+++|+||++||||||+||||++||||||||||+||+
T Consensus 87 ~~~q~e~~rkmlla~~~d~rvvlVKLADrlhNmrtl~~~~~~k~~~iA~Et~~iyaPlA~rLG~~~ik~eLedl~f~~l~ 166 (683)
T TIGR00691 87 QELQAENFRKMILAMAQDIRVIVIKLADRLHNMRTLDFLPPEKQKRIAKETLEIYAPLAHRLGMSSIKTELEDLSFKYLY 166 (683)
T ss_pred hHHHHHHHHHHHHhhcCCcceEeeeHHHHHhHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcC
Confidence 3458999999999997 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHhcCCceeeeeccccChHHHHHHHhhcCCCCCCCCcceEEEEEeCCh
Q 011341 160 PDQHTELSSKLVEC--FDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENE 237 (488)
Q Consensus 160 p~~y~~i~~~l~~~--~~~~~i~~~~~~l~~~L~~~gi~~~~v~~R~K~~~Si~~K~~rk~~~~~~i~Dl~giRIiv~~~ 237 (488)
|++|+.|++.|.+. .++.+++.+...|++.|.+.||++. |+||+|++||||+||++|+.+|++|+|++|+||||+++
T Consensus 167 p~~y~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~-i~~R~K~~~Si~~Km~~k~~~~~~i~Di~~~RIi~~~~ 245 (683)
T TIGR00691 167 PKEYENIKSLVNEQKVNRENKLEKFKSELEKRLEDSGIEAE-LEGRSKHLYSIYQKMTRKGQNFDEIHDLLAIRIIVKSE 245 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE-EEeeeCCHHHHHHHHHhcCCCHHHcccceeEEEEECCH
Confidence 99999999999886 4789999999999999999999985 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCcccCcccCCCCCCccceeEEEEcCCeeeEEEEEeehhhhHHHHhhhhhhcccccCCCCcch
Q 011341 238 EDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSS 317 (488)
Q Consensus 238 ~dcy~vl~~i~~~~~~~~~~~kDyI~~PK~nGYqSlH~~v~~~~g~~~EIQIRT~~mh~~Ae~g~aah~~YK~~~~~~~~ 317 (488)
.|||+++|+||+.|+|+|++|||||++||+||||||||+|.+|+|.++||||||..||.|||+|+||||+||++... ..
T Consensus 246 ~dcy~vlg~ih~~~~p~~~~~kDyIa~PK~nGYqSlHt~v~~~~g~~~EvQIRT~~mh~~Ae~Gvaahw~yk~~~~~-~~ 324 (683)
T TIGR00691 246 LDCYRVLGIIHLLFKPIPGRFKDYIASPKENGYQSLHTTVRGPKGLPVEIQIRTEDMDRVAEYGIAAHWIYKEGNPQ-KE 324 (683)
T ss_pred HHHHHHHHHHHhcCCCCcccccccccCCCCCCcceeEEEEEcCCCCEEEEEEEehHHHHHHHHHHHHHHhhcCCCCc-ch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987432 12
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCCCCCccCCCCCCCCCCCCCCCCCCcccCCCCCCCCCEEEEEEeCCcceEEecCCCCc
Q 011341 318 FVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSST 397 (488)
Q Consensus 318 ~~~~~~~wl~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vftp~~~~~~~i~v~~~~~~~~~~~~lp~GsT 397 (488)
...+.+.||+++++||++..+ +.+|++.+|.+ +| .++||||||+| +++.||+|||
T Consensus 325 ~~~~~~~wl~~~~~~~~~~~~----~~~~~~~~k~~-l~----~~~i~vfTPkG----------------~~~~lp~gst 379 (683)
T TIGR00691 325 ALIDDMRWLNYLVEWQQESAN----FFEFIENLKSD-LF----NEEIYVFTPKG----------------DVVELPSGST 379 (683)
T ss_pred hHHHHHHHHHHHHHHHhhccc----chhHHHHhhHH-hc----cCceEEECCCC----------------eEEEcCCCCC
Confidence 245668999999999988655 56888988876 44 48999999996 7999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEee---CCCCccHHH------HHHHHHHHhh
Q 011341 398 VMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP---AIPDKSLTE------YREEIQRMYE 468 (488)
Q Consensus 398 ~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~---~~~~~~~~~------~~~~i~~~~~ 468 (488)
|+||||+||+++| ++|+||+|||++|| ++++|++||+|||+| +.|+.+|+. +|++|++||.
T Consensus 380 ~~DfAy~ih~~~g---------~~~~~a~vng~~v~-l~~~l~~gd~vei~t~~~~~P~~dWL~~v~T~rAR~kIr~~~k 449 (683)
T TIGR00691 380 PVDFAYAVHTDVG---------NKCTGAKVNGKIVP-LDKELENGDVVEIITGKNSNPSVIWLNFVVTSKARNKIRQWLK 449 (683)
T ss_pred HHHHHHHHhHHhH---------hceeEEEECCEECC-CCccCCCCCEEEEEeCCCCCCCHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999975 68999999999995 999999999999998 469999995 4999999994
Q ss_pred h
Q 011341 469 R 469 (488)
Q Consensus 469 ~ 469 (488)
.
T Consensus 450 ~ 450 (683)
T TIGR00691 450 K 450 (683)
T ss_pred H
Confidence 4
No 5
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-96 Score=738.77 Aligned_cols=451 Identities=71% Similarity=1.081 Sum_probs=417.8
Q ss_pred CCCCCc-chhHHHHHHHHHHHHcCCCHHHHHHHhhhccccccCCCHHHHHhHhhHHHHHHHHHhccccccchHHhhcccc
Q 011341 1 MRASGD-PYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTA 79 (488)
Q Consensus 1 ~r~sG~-Pyi~H~l~VA~iLa~lg~D~~~i~AALLHDvvEDt~~t~eel~~~FG~~Va~lV~~vTk~~~~~~~~r~~~~~ 79 (488)
+|+++. ||+.||+.+|.||+.+++|+.+++||+||||||||.+|.++|+++||.+||.||++||+++.+++..|.+.
T Consensus 92 ~Rad~~rPY~nH~i~ta~iLAd~~~ds~Vv~AaiLHDVVDDt~~S~eeI~~~FG~gVa~LV~EvtddKnL~K~eRk~l-- 169 (543)
T KOG1157|consen 92 MRADDDRPYLNHCIETAMILADIGADSTVVVAAILHDVVDDTFMSYEEILRHFGTGVADLVEEVTDDKNLSKLERKNL-- 169 (543)
T ss_pred cccCCCCchhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHhCccHHHHHHHHhcccchhHHHHHHH--
Confidence 356665 99999999999999999999999999999999999999999999999999999999999999998766542
Q ss_pred cchHHHHHHHHHHhhcCCchhhHHHHhhHHhhhccccCCChHHHHHHHHHHHHHhhhhhcccChhhHHHHHHhhhhhccC
Q 011341 80 SKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLN 159 (488)
Q Consensus 80 ~~~~~~e~lRkmlla~~D~rvvlIKLADRLhNmrtl~~~~~~k~~~~A~Etl~iyaPLA~rLGi~~ik~ELedl~f~~l~ 159 (488)
.|++.++ |++++++.||+||||||+|||||+|..+||-+|++.+.||+.||+|+|+++|++.++.+||+|||+|++
T Consensus 170 ---~qiet~~-~fyak~s~RAvLIkLADKLdNMRdL~~lpPvgwq~~r~e~lfIwapla~~~g~gtn~~lle~Ldf~~l~ 245 (543)
T KOG1157|consen 170 ---TQIETVE-MFYAKASARAVLIKLADKLDNMRDLYALPPVGWQRFRKETLFIWAPLANRLGIGTNKVLLENLDFKHLF 245 (543)
T ss_pred ---HHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhHHHHHHHHHHhhHHHHHhcccchHHHHhhhhHHHhC
Confidence 3677887 778888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCceeeeeccccChHHHHHHHhhcCCCCCCCCcceEEEEEeCChHH
Q 011341 160 PDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEED 239 (488)
Q Consensus 160 p~~y~~i~~~l~~~~~~~~i~~~~~~l~~~L~~~gi~~~~v~~R~K~~~Si~~K~~rk~~~~~~i~Dl~giRIiv~~~~d 239 (488)
|..|..+..+|+..+++.+|...++.|++.|+.+||.++.|+||.|+.||||+||.|++...++|+|+.|+|+||.++.|
T Consensus 246 p~~~~~m~s~l~~~~~~~mi~~~~~~l~~~l~~a~i~~~~i~gr~ks~ysi~~kmlk~~~~~dei~di~glr~i~~~~~~ 325 (543)
T KOG1157|consen 246 PCQHIEMSSMLEDSFDEAMITSAIEKLEQALKKAGISYHVIKGRHKSLYSIYKKMLKKKLTPDEIHDIHGLRLIVDNESD 325 (543)
T ss_pred chhHHHHHHHHhcccchHHHHHHHHHHHHHHHhccceeEEEecchhhHHHHHHHHHhcCCCHHHhhhhcceEEEEcCchH
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCcccCcccCCCCCCccceeEEEEcCCeeeEEEEEeehhhhHHHHhhhhhhcccccCCCCcchhH
Q 011341 240 CYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFV 319 (488)
Q Consensus 240 cy~vl~~i~~~~~~~~~~~kDyI~~PK~nGYqSlH~~v~~~~g~~~EIQIRT~~mh~~Ae~g~aah~~YK~~~~~~~~~~ 319 (488)
||+++|+||++|+.+|++.||||+.||.||||||||+|.+.+-+++||||||..||..||+|.|+||+||+|. .+++.
T Consensus 326 cyk~~~vv~slw~evp~k~kdyia~pk~ngy~slh~~v~~d~~~plevqirt~em~~~a~~g~aah~~yk~g~--~~~~~ 403 (543)
T KOG1157|consen 326 CYKALGVVHSLWSEVPGKLKDYIAHPKFNGYQSLHTVVMVDGTRPLEVQIRTMEMHLQAEFGFAAHWRYKEGK--TSSFV 403 (543)
T ss_pred HHHHHHHHHHHHHhCcchhhhhhcCccccccceeeeEEecCCcceeEEEEeeeccccccccchhhHhhhhcCC--CCHHH
Confidence 9999999999999999999999999999999999999998777899999999999999999999999999994 45788
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCccCCCCCCCCCCCCCCCCCCcccCCCCCCCCCEEEEEEeCCcceEEecCCCCcHH
Q 011341 320 LQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVM 399 (488)
Q Consensus 320 ~~~~~wl~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vftp~~~~~~~i~v~~~~~~~~~~~~lp~GsT~~ 399 (488)
.+++.|.+|...|..+++.++.++... .+|-|++|++||+|+|.|+++++++++|++.+++++-+-++|+-+|++
T Consensus 404 ~q~~~~~~~~~~~~~~~~~kd~ss~~~-----~~~k~~s~~~d~~f~~~~~~~~~~~~~~~~ie~e~m~~~~~~e~~~~~ 478 (543)
T KOG1157|consen 404 LQMVEWARWVVTWHAEIMSKDISSIKS-----SSCKFPSHQEDCPFSYKPKNGQGGPVYVIVIENEKMGVQEFPEMSTVS 478 (543)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccc-----cccCCCCccccCceeecCCCCCCCceEEEEeeccccCCCCCchhhhHH
Confidence 899999999999999988766433221 236789999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEeeCCCCccHHHHHHHHHHHhhh
Q 011341 400 DLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLTEYREEIQRMYER 469 (488)
Q Consensus 400 DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~~~~~~~~~~~~~~i~~~~~~ 469 (488)
|+--+-+++.++|+.++.+. ....-+.|. ++.+++++||+||..+..|+.++..+|++++|||.+
T Consensus 479 d~~s~~~~~s~~~~~~~~~~-e~lr~~~~~----d~~~k~~m~d~~~~~p~~~~~~l~e~~~~~~~m~~~ 543 (543)
T KOG1157|consen 479 DLLSRAGPGSSRWSMYQIPA-EELRPRLNQ----DLKYKLKMGDVVELTPHIPDTSLTEYREEIQRMYDR 543 (543)
T ss_pred HhhccCCCCccchhhhcCcH-HHhhhhhcc----chhHHhhhcchhhcCCCCCChhHHHHHHHHHHhhcC
Confidence 99999998888888766444 445556665 488999999999999999999999999999999953
No 6
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=100.00 E-value=6.2e-37 Score=281.58 Aligned_cols=140 Identities=49% Similarity=0.742 Sum_probs=86.9
Q ss_pred CCCCCcchhHHHHHHHHHHHHcCCCHHHHHHHhhhccccccCCCHHHHHhHhhHHHHHHHHHhccccccchHHhhccccc
Q 011341 1 MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTAS 80 (488)
Q Consensus 1 ~r~sG~Pyi~H~l~VA~iLa~lg~D~~~i~AALLHDvvEDt~~t~eel~~~FG~~Va~lV~~vTk~~~~~~~~r~~~~~~ 80 (488)
.+++|+||+.||++||.+|.++|+|+++++||||||++|||..+ ++|++.||++|+.+|.++|+++.+.... ....
T Consensus 13 ~~~~g~py~~H~~~va~~l~~~~~d~~~i~aalLHD~ied~~~~-~~i~~~fg~~V~~lV~~lt~~~~~~~~~---~~~~ 88 (153)
T PF13328_consen 13 RRKSGEPYISHPLEVAEILAELGLDEETIAAALLHDVIEDTETT-EDIEERFGEDVADLVDALTKIKKLSKKP---WEER 88 (153)
T ss_dssp B-ST--BTTHHHHHHHHHHHTS---HHHHHHHHHTTHHHHSS---HHHHHHHHHHHHHHHHHT---TTS-HH------HH
T ss_pred cCCCCCcHHHHHHHHHHHHHHcCCCHHHHhhheeecHHHhcCCH-HHHHHccChHHHHHHHHHHhcccccccc---chhh
Confidence 36899999999999999999999999999999999999999656 9999999999999999999999887541 1112
Q ss_pred chHHHHHHHHHHhhcC-CchhhHHHHhhHHhhhccccCCChHHHHHHHHHHHHHhhhhhcccChh
Q 011341 81 KTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGIS 144 (488)
Q Consensus 81 ~~~~~e~lRkmlla~~-D~rvvlIKLADRLhNmrtl~~~~~~k~~~~A~Etl~iyaPLA~rLGi~ 144 (488)
...+.+++|+||++++ |+||++||||||+||||++...|+++++++|+||+++|+|||||||||
T Consensus 89 ~~~~~~~~r~ml~~~~~d~~~~lIKlaDrl~nl~~~~~~~~~~~~~~a~Et~~i~apLA~rLGiw 153 (153)
T PF13328_consen 89 SEEYAERLRRMLLAMSEDVRAVLIKLADRLHNLRTIKYLPPEKQRRYARETLDIYAPLAHRLGIW 153 (153)
T ss_dssp HHHHHHHGGG-----S-H-HHHHHHHHHHHHHHHHHHH---TT----------------------
T ss_pred HHHHHHHhhhhccccCCchHHHHHHHHHHHHhhccHHHCCHHHhhhhhhccccccccccccccCC
Confidence 3568899999999996 899999999999999999998899999999999999999999999998
No 7
>cd05399 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases. This family includes the catalytic domains of Escherichia coli ppGpp synthetase (RelA), ppGpp synthetase/hydrolase (SpoT), and related proteins. RelA synthesizes (p)ppGpp in response to amino-acid starvation and in association with ribosomes. (p)ppGpp triggers the bacterial stringent response. SpoT catalyzes (p)ppGpp synthesis under carbon limitation in a ribosome-independent manner. It also catalyzes (p)ppGpp degradation. Gram-negative bacteria have two enzymes involved in (p)ppGpp metabolism while most Gram-positive organisms have a single Rel-Spo enzyme (Rel), which both synthesizes and degrades (p)ppGpp. The Arabidopsis thaliana Rel-Spo proteins, At-RSH1,-2, and-3 appear to regulate a rapid (p)ppGpp-mediated response to pathogens and other stresses. This catalytic domain is found in association with an N-terminal HD domain and a C-terminal metal dependent phosphohydro
Probab=99.97 E-value=2.5e-30 Score=230.87 Aligned_cols=119 Identities=45% Similarity=0.720 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHhcCC---ceeeeeccccChHHHHHHHhhcCCCC---CCCCcceEEEEEeCChHHHHHHHHHHHhhccCC
Q 011341 181 SAIEKLEQALKDKNI---SFLVLCGRHKSLYSIHCKMLKKKLTM---DEIHDIYGLRLIVENEEDCYQALRVVHQLWAEV 254 (488)
Q Consensus 181 ~~~~~l~~~L~~~gi---~~~~v~~R~K~~~Si~~K~~rk~~~~---~~i~Dl~giRIiv~~~~dcy~vl~~i~~~~~~~ 254 (488)
.+...+++.|++.++ .. .|++|+|+++|+++|+.+++.+. ++|+|++|+||+|++.+|||.++++|++.|++.
T Consensus 2 ~~~~~l~~~L~~~~~~~~~~-~v~~RvK~~~sl~~Kl~~~~~~~~~~~~i~Dl~g~Rii~~~~~d~~~v~~~l~~~f~~~ 80 (129)
T cd05399 2 AALEEIADLLRDAGIIGRVA-SVSGRVKSPYSIYEKLRRKGKDLPILDEITDLVGVRVVLLFVDDCYRVLDLLHSLFKVI 80 (129)
T ss_pred hHHHHHHHHHHHcCCCCCCc-EEEEecCCHHHHHHHHHhhCCCCCcHHHhhhhheEEEEEeCHHHHHHHHHHHHhCCccc
Confidence 345677888888888 55 59999999999999999998877 899999999999999999999999999999999
Q ss_pred CCcccCcccCCCCCCccceeEEEEcCC---eeeEEEEEeehhhhHHHHh
Q 011341 255 PGKMKDYITRPKFNGYQSLHTVVTGEG---LVPLEVQIRTKEMHLQAEF 300 (488)
Q Consensus 255 ~~~~kDyI~~PK~nGYqSlH~~v~~~~---g~~~EIQIRT~~mh~~Ae~ 300 (488)
|++++||++.||.|||||+|+++..++ |.++||||||.+||+|||+
T Consensus 81 ~~~~~D~~~~p~~~GYrslH~~~~~~~~~~~~~~EIQirT~~~~~wae~ 129 (129)
T cd05399 81 PGRVKDYIAEPKENGYQSLHLVVRGPEDKAGVLIEIQIRTILMHAWAEL 129 (129)
T ss_pred CccccCCcCCCCCCCceEEEEEEEcCCCcCCcEEEEEeCCHHHHHHhcC
Confidence 999999999999999999999999877 7999999999999999984
No 8
>PF04607 RelA_SpoT: Region found in RelA / SpoT proteins; InterPro: IPR007685 The functions of Escherichia coli RelA and SpoT differ somewhat. RelA (2.7.6.5 from EC) produces pppGpp (or ppGpp) from ATP and GTP (or GDP). SpoT (3.1.7.2 from EC) degrades ppGpp, but may also act as a secondary ppGpp synthetase. The two proteins are strongly similar. In many species, a single homologue to SpoT and RelA appears reponsible for both ppGpp synthesis and ppGpp degradation. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. ; GO: 0015969 guanosine tetraphosphate metabolic process; PDB: 2BE3_B 1VJ7_B 3L9D_B.
Probab=99.96 E-value=8.4e-31 Score=228.97 Aligned_cols=108 Identities=40% Similarity=0.589 Sum_probs=95.1
Q ss_pred ccccChHHHHHHHhhcCC---CCCCCCcceEEEEEeCChHHHHHHHHHHHhhccCCCCcccCcccCCCCCCccceeEEE-
Q 011341 202 GRHKSLYSIHCKMLKKKL---TMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVV- 277 (488)
Q Consensus 202 ~R~K~~~Si~~K~~rk~~---~~~~i~Dl~giRIiv~~~~dcy~vl~~i~~~~~~~~~~~kDyI~~PK~nGYqSlH~~v- 277 (488)
+|+|+++|+++|+.|++. ++++|+|++|+||||.+.+|||.++++|++.|.+.+.+++|||+.|+.|||||+|++|
T Consensus 1 ~RvK~~~Sl~~Kl~r~~~~~~~~~~i~Dl~G~RIi~~~~~d~~~v~~~l~~~~~~~~~~~~d~i~~~~~~GYrs~H~~v~ 80 (115)
T PF04607_consen 1 SRVKSPESLIEKLRRKGGPDNPLKDIQDLVGIRIIVYFPDDCYKVLGLLHKLFDVKIDRSKDYIANPKSNGYRSLHYIVP 80 (115)
T ss_dssp EEE--HHHHHHCHHHHTGCCCCCCCTCCSEEEEEEESSCCHHHHHHHHHHTHSSCEEEEEEETTTT--TTS--EEEEEEE
T ss_pred CCCCCHHHHHHHHHhHCCCcccHHHhccccEEEEEEeeHHHHHHHHHHHHHcCCcccccccccccccccCCcEeeEeeee
Confidence 699999999999999875 6899999999999999999999999999999999999999999999999999999999
Q ss_pred --EcCCeeeEEEEEeehhhhHHHHhhhhhhcccccC
Q 011341 278 --TGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEG 311 (488)
Q Consensus 278 --~~~~g~~~EIQIRT~~mh~~Ae~g~aah~~YK~~ 311 (488)
..+.+.+|||||||.+||+|||++ |||.||..
T Consensus 81 ~~~~~~~~~~EiQIrT~~~~~waei~--h~~~YK~~ 114 (115)
T PF04607_consen 81 ENESFKGYPFEIQIRTLLQHAWAEIE--HDLRYKSS 114 (115)
T ss_dssp ETTECEEEEEEEEEEEHHHHHHHHHH--HHHHHHCT
T ss_pred ecccCCCceeeeeeccHHHHHHHHHH--HHHhCCCC
Confidence 456789999999999999999965 78999964
No 9
>COG2357 PpGpp synthetase catalytic domain [General function prediction only]
Probab=99.95 E-value=2.3e-28 Score=234.43 Aligned_cols=114 Identities=32% Similarity=0.432 Sum_probs=102.4
Q ss_pred eeeeeccccChHHHHHHHhhcCCCC------CCCCcceEEEEEeCChHHHHHHHHHHHhhccCCCCcccCcccCCCCCCc
Q 011341 197 FLVLCGRHKSLYSIHCKMLKKKLTM------DEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGY 270 (488)
Q Consensus 197 ~~~v~~R~K~~~Si~~K~~rk~~~~------~~i~Dl~giRIiv~~~~dcy~vl~~i~~~~~~~~~~~kDyI~~PK~nGY 270 (488)
+++|++|+|++.||..|+.|||.++ ++|+|++|+||+|.|.+|.|.+..+|.++........||||.+||+|||
T Consensus 52 ie~Vt~RvK~~~Si~~Kl~RK~~~i~~~~~~e~i~DIaGIRI~c~F~~DI~~v~~~l~~~~d~~iv~~kDyi~n~k~~GY 131 (231)
T COG2357 52 IEHVTSRVKSPESILEKLRRKGLEITYENLKEDIQDIAGIRIICQFVDDIYRVVDLLKSRKDFTIVEEKDYIRNPKPNGY 131 (231)
T ss_pred hHHHhhccCCHHHHHHHHHhcCCCCChHHHHhHHHhhcceeEeeehHhhHHHHHHHHhcccCccchhHHHHHhCCCCCCC
Confidence 4579999999999999999999643 6899999999999999999999999999988777789999999999999
Q ss_pred cceeEEEEcCC-------eeeEEEEEeehhhhHHHHhhhhhhccccc
Q 011341 271 QSLHTVVTGEG-------LVPLEVQIRTKEMHLQAEFGFAAHWRYKE 310 (488)
Q Consensus 271 qSlH~~v~~~~-------g~~~EIQIRT~~mh~~Ae~g~aah~~YK~ 310 (488)
||+|++|.-|. +..+||||||.+||.||+++|.-.|+|.+
T Consensus 132 RS~Hlive~pv~~~~~~~~~~vEIQIRTiam~fWAsiEH~l~YKy~~ 178 (231)
T COG2357 132 RSYHLILEVPVFTINGVKKVRVEIQIRTIAMDFWASIEHKLRYKYGG 178 (231)
T ss_pred ceEEEEEeccchhhccccceEEEEehhHHHHHHHHHHHHHhhccccc
Confidence 99999998663 47999999999999999999765555554
No 10
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=99.48 E-value=5.9e-15 Score=114.98 Aligned_cols=52 Identities=33% Similarity=0.467 Sum_probs=47.3
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEee
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP 449 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~ 449 (488)
++++||+|+||.||||.||++++ +++++|+|||+.+ +++++|++||+|||+|
T Consensus 9 ~~~~~~~g~T~~d~A~~I~~~l~---------~~~~~A~Vng~~v-dl~~~L~~~d~v~iiT 60 (60)
T PF02824_consen 9 SIKELPEGSTVLDVAYSIHSSLA---------KRAVAAKVNGQLV-DLDHPLEDGDVVEIIT 60 (60)
T ss_dssp CEEEEETTBBHHHHHHHHSHHHH---------HCEEEEEETTEEE-ETTSBB-SSEEEEEEE
T ss_pred CeeeCCCCCCHHHHHHHHCHHHH---------hheeEEEEcCEEC-CCCCCcCCCCEEEEEC
Confidence 58999999999999999998864 6789999999999 5999999999999997
No 11
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.10 E-value=4.2e-11 Score=97.71 Aligned_cols=54 Identities=20% Similarity=0.222 Sum_probs=47.5
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEee
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP 449 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~ 449 (488)
+.+.||+|+|+.||||.||++++ ..|..|+++| |++.+ +++|+|++||+|+|+|
T Consensus 23 d~~~l~~GaTv~D~A~~IHtdi~------~~f~~Ai~~k-~~~~v-g~~~~L~dgDvV~Ii~ 76 (76)
T cd01669 23 DAFLLPKGSTARDLAYAIHTDIG------DGFLHAIDAR-TGRRV-GEDYELKHRDVIKIVS 76 (76)
T ss_pred ceEEECCCCCHHHHHHHHHHHHH------hcceeeEEee-CCEEe-CCCcEecCCCEEEEeC
Confidence 57899999999999999999864 4456677788 99999 5999999999999986
No 12
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.04 E-value=1.1e-10 Score=94.84 Aligned_cols=55 Identities=20% Similarity=0.153 Sum_probs=46.4
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCcccc----ccccCCcccCCCCCccCCCCEEEEee
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEEL----RPRLNHKAVGDPRCKLKMGDVVELTP 449 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v----~akvN~~~v~~l~~~L~~GD~VeIi~ 449 (488)
+++.||+|||+.|||++||++++ ..|..++ .++++|+.| +++++|++||+|||++
T Consensus 17 ~~liL~~GaTV~D~a~~iH~di~------~~f~~A~v~g~s~~~~gq~V-gl~~~L~d~DvVeI~~ 75 (75)
T cd01666 17 EPVILRRGSTVEDVCNKIHKDLV------KQFKYALVWGSSVKHSPQRV-GLDHVLEDEDVVQIVK 75 (75)
T ss_pred CCEEECCCCCHHHHHHHHHHHHH------HhCCeeEEeccCCcCCCeEC-CCCCEecCCCEEEEeC
Confidence 68999999999999999998753 3344444 677899999 5999999999999984
No 13
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=98.49 E-value=1.6e-07 Score=72.03 Aligned_cols=52 Identities=27% Similarity=0.367 Sum_probs=43.6
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEee
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP 449 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~ 449 (488)
..+++|.|.|+.|++..++.+.. ...+++++||+.+ +++++|++||.||+++
T Consensus 9 ~~~~~~~~~t~~~~~~~~~~~~~---------~~~va~~vng~~v-dl~~~l~~~~~ve~v~ 60 (60)
T cd01668 9 EIIELPAGATVLDFAYAIHTEIG---------NRCVGAKVNGKLV-PLSTVLKDGDIVEIIT 60 (60)
T ss_pred CEEEcCCCCCHHHHHHHHChHhh---------hheEEEEECCEEC-CCCCCCCCCCEEEEEC
Confidence 57899999999999987765421 3457889999999 5999999999999985
No 14
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.30 E-value=5.7e-07 Score=95.14 Aligned_cols=55 Identities=20% Similarity=0.273 Sum_probs=48.3
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEeeC
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPA 450 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~~ 450 (488)
+...||+|||+.||||.||++++ ..|..|.+++ +++.+ +++|+|++||+|+|+++
T Consensus 341 ~~~~l~~g~t~~d~A~~IH~d~~------~~fi~A~~~~-~~~~~-g~~~~l~dgDiv~i~~~ 395 (396)
T PRK09602 341 DAFLLPKGSTARDLAYKIHTDIG------EGFLYAIDAR-TKRRI-GEDYELKDGDVIKIVST 395 (396)
T ss_pred eeEEECCCCCHHHHHHHHHHHHH------hhceehhccc-CCccc-CCCcEecCCCEEEEEeC
Confidence 68899999999999999999974 5567778888 78888 59999999999999974
No 15
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.23 E-value=9.8e-07 Score=72.08 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=42.5
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEee
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP 449 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~ 449 (488)
+.+.||+|+|+.|||+.||+++. ..|..++..+ ++.+ ..+|.|++||+|+|++
T Consensus 24 ~~~~l~~g~tv~d~a~~IH~d~~------~~F~~A~v~~--~~~v-g~d~~l~d~DVv~i~~ 76 (76)
T cd04938 24 DCVLVKKGTTVGDVARKIHGDLE------KGFIEAVGGR--RRLE-GKDVILGKNDILKFKT 76 (76)
T ss_pred eeEEEcCCCCHHHHHHHHhHHHH------hccEEEEEcc--CEEE-CCCEEecCCCEEEEEC
Confidence 68899999999999999999863 3344444333 4677 5999999999999974
No 16
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=98.15 E-value=4e-06 Score=79.06 Aligned_cols=65 Identities=28% Similarity=0.408 Sum_probs=53.9
Q ss_pred CCCc--chhHHHHHHHHHHHHcCCCHHHHHHHhhhcc---ccccCC--------------CHHHHHhHhhHHHHHHHHHh
Q 011341 3 ASGD--PYLLHCVETAMLLAAIGANSTVVAAGLLHDT---LDDAFL--------------SYDYIFRTFGAGVADLVEGV 63 (488)
Q Consensus 3 ~sG~--Pyi~H~l~VA~iLa~lg~D~~~i~AALLHDv---vEDt~~--------------t~eel~~~FG~~Va~lV~~v 63 (488)
.+|+ |++.|++.+|.+...-|.|++.++||||||+ ++|+.- ..+.|+..||++|+.+|..-
T Consensus 19 y~Ge~Vs~leH~LQ~A~lA~~~Gad~elvvAALLHDIGhll~~~~~~~~~~g~~~~He~iga~~Lr~~F~~~V~~lV~~H 98 (179)
T TIGR03276 19 YGGEAVSQLEHALQCAQLAEAAGADDELIVAAFLHDIGHLLADEGATPMGRGGDDHHEELAADYLRELFSPSVTEPIRLH 98 (179)
T ss_pred cCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcchhhhcccccccccCCCccHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 3455 5899999999988899999999999999998 776432 25778889999999999987
Q ss_pred cccc
Q 011341 64 SKLS 67 (488)
Q Consensus 64 Tk~~ 67 (488)
..-+
T Consensus 99 v~aK 102 (179)
T TIGR03276 99 VQAK 102 (179)
T ss_pred HHHH
Confidence 6543
No 17
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.85 E-value=2.4e-05 Score=87.69 Aligned_cols=80 Identities=23% Similarity=0.347 Sum_probs=66.6
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEeeCCCCccHH--------HH
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLT--------EY 459 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~~~~~~~~~--------~~ 459 (488)
..+++|.|+|+.|+|+.++.+.. +.+++|+|||+++ +|++++.+++.||+++..+..++. .+
T Consensus 10 ~~~~~~~gtt~~dia~~~~~~~~---------~~~v~a~vng~l~-dL~~~l~~d~~Vefi~~~~~~g~~~y~hS~~hll 79 (638)
T PRK00413 10 SVREFEAGVTVADVAASISPGLA---------KAAVAGKVNGELV-DLSTPIEEDASLEIITAKDEEGLEIIRHSAAHLL 79 (638)
T ss_pred CEEEeCCCCCHHHHHHHhhhhch---------hheEEEEECCEEe-eCCccccCCCceeeeeccchhhHHHHhhhHHHHH
Confidence 47889999999999999977632 5679999999999 599999999999999966555554 45
Q ss_pred HHHHHHHhhhc-cccCCCC
Q 011341 460 REEIQRMYERG-LAVSNTG 477 (488)
Q Consensus 460 ~~~i~~~~~~~-~~~~~~~ 477 (488)
..+++++|+.+ +++|++.
T Consensus 80 ~~A~~~~~~~~~~~~~~~~ 98 (638)
T PRK00413 80 AQAVKRLYPDAKLTIGPVI 98 (638)
T ss_pred HHHHHHHcCCceEEECCcc
Confidence 88899999877 8888654
No 18
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=97.81 E-value=1.9e-05 Score=59.06 Aligned_cols=52 Identities=27% Similarity=0.337 Sum_probs=43.4
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEee
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP 449 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~ 449 (488)
..+.+|+|+|+.|++..++.... ...+++++||+++ +++++|.+||.||+++
T Consensus 9 ~~~~~~~g~t~~~~~~~~~~~~~---------~~~~~~~vn~~~~-~l~~~l~~~~~i~~i~ 60 (60)
T cd01616 9 SAVELPKGATAMDFALKIHTDLG---------KGFIGALVNGQLV-DLSYTLQDGDTVSIVT 60 (60)
T ss_pred CEEEcCCCCCHHHHHHHHHHHHH---------hheEEEEECCEEC-CCCcCcCCCCEEEEeC
Confidence 47899999999999988765421 2457789999999 5999999999999985
No 19
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=97.47 E-value=0.00027 Score=55.70 Aligned_cols=55 Identities=29% Similarity=0.454 Sum_probs=43.6
Q ss_pred EEeCCcceEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCC----CCCccCCCCEEEEeeC
Q 011341 381 MIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGD----PRCKLKMGDVVELTPA 450 (488)
Q Consensus 381 ~~~~~~~~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~----l~~~L~~GD~VeIi~~ 450 (488)
..+| ..+++|+|.|+.|+.-..+-. ...+.+.+||+++ + .++.|++||.|||++.
T Consensus 4 ~vNG---~~~~~~~~~tl~~lL~~l~~~-----------~~~vav~vNg~iv-~r~~~~~~~l~~gD~vei~~~ 62 (66)
T PRK05659 4 QLNG---EPRELPDGESVAALLAREGLA-----------GRRVAVEVNGEIV-PRSQHASTALREGDVVEIVHA 62 (66)
T ss_pred EECC---eEEEcCCCCCHHHHHHhcCCC-----------CCeEEEEECCeEe-CHHHcCcccCCCCCEEEEEEE
Confidence 4455 588999999999998776432 2345677999888 4 7899999999999974
No 20
>PRK06437 hypothetical protein; Provisional
Probab=97.40 E-value=0.00039 Score=55.36 Aligned_cols=59 Identities=20% Similarity=0.166 Sum_probs=45.7
Q ss_pred EEeCCcceEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEeeCC
Q 011341 381 MIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAI 451 (488)
Q Consensus 381 ~~~~~~~~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~~~ 451 (488)
.++|++=..+++|+|.|+.|+.-..+-. ...+.+-+||+++| .++.|++||.|||++..
T Consensus 6 ~v~g~~~~~~~i~~~~tv~dLL~~Lgi~-----------~~~vaV~vNg~iv~-~~~~L~dgD~Veiv~~V 64 (67)
T PRK06437 6 RVKGHINKTIEIDHELTVNDIIKDLGLD-----------EEEYVVIVNGSPVL-EDHNVKKEDDVLILEVF 64 (67)
T ss_pred EecCCcceEEEcCCCCcHHHHHHHcCCC-----------CccEEEEECCEECC-CceEcCCCCEEEEEecc
Confidence 3344322468899999999999877543 13456779999995 99999999999999854
No 21
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=97.40 E-value=0.00018 Score=54.08 Aligned_cols=52 Identities=27% Similarity=0.411 Sum_probs=43.2
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEee
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP 449 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~ 449 (488)
..+.+|.|+|+.|+|..++.... ...+++++||+++ +|.+++.+|+.||.++
T Consensus 9 ~~~~~~~~~t~~~~~~~~~~~~~---------~~~v~~~vng~~~-dL~~~l~~~~~ie~i~ 60 (61)
T cd01667 9 SVKEFPKGTTPLDIAKSISPGLA---------KKAVAAKVNGELV-DLSRPLEEDCELEIIT 60 (61)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHH---------hheEEEEECCEEe-cCCcCcCCCCEEEEEe
Confidence 46789999999999998854321 2457899999999 5999999999999985
No 22
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=97.38 E-value=0.00032 Score=55.24 Aligned_cols=52 Identities=27% Similarity=0.368 Sum_probs=42.6
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCC----CccCCCCEEEEeeCC
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPR----CKLKMGDVVELTPAI 451 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~----~~L~~GD~VeIi~~~ 451 (488)
..+++|.|.|+.|+.-..+.. ...+.+.+||+++| .+ +.|++||.|+|++..
T Consensus 7 ~~~~~~~~~tv~~ll~~l~~~-----------~~~i~V~vNg~~v~-~~~~~~~~L~~gD~V~ii~~v 62 (65)
T cd00565 7 EPREVEEGATLAELLEELGLD-----------PRGVAVALNGEIVP-RSEWASTPLQDGDRIEIVTAV 62 (65)
T ss_pred eEEEcCCCCCHHHHHHHcCCC-----------CCcEEEEECCEEcC-HHHcCceecCCCCEEEEEEec
Confidence 588999999999998776432 23467789999995 77 999999999999843
No 23
>PRK07440 hypothetical protein; Provisional
Probab=97.15 E-value=0.0009 Score=53.76 Aligned_cols=57 Identities=14% Similarity=0.322 Sum_probs=45.3
Q ss_pred EEEeCCcceEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCC----CCCccCCCCEEEEeeCC
Q 011341 380 IMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGD----PRCKLKMGDVVELTPAI 451 (488)
Q Consensus 380 ~~~~~~~~~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~----l~~~L~~GD~VeIi~~~ 451 (488)
+..+| +.+++|.|.|+.|+.-..+.. ...+.+.+|+++| + .++.|++||.|||++..
T Consensus 7 i~vNG---~~~~~~~~~tl~~lL~~l~~~-----------~~~vav~~N~~iv-~r~~w~~~~L~~gD~IEIv~~v 67 (70)
T PRK07440 7 LQVNG---ETRTCSSGTSLPDLLQQLGFN-----------PRLVAVEYNGEIL-HRQFWEQTQVQPGDRLEIVTIV 67 (70)
T ss_pred EEECC---EEEEcCCCCCHHHHHHHcCCC-----------CCeEEEEECCEEe-CHHHcCceecCCCCEEEEEEEe
Confidence 34455 589999999999998765432 2457889999999 5 77999999999999843
No 24
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=97.06 E-value=0.001 Score=53.01 Aligned_cols=52 Identities=21% Similarity=0.246 Sum_probs=41.9
Q ss_pred eEEecCCC-CcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCC----CccCCCCEEEEeeCC
Q 011341 388 SVQEFPTS-STVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPR----CKLKMGDVVELTPAI 451 (488)
Q Consensus 388 ~~~~lp~G-sT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~----~~L~~GD~VeIi~~~ 451 (488)
+.+++|.+ +|+.|+.-..+.+ ...+.+-+|+++|| -+ +.|++||.|||++..
T Consensus 8 ~~~~~~~~~~tv~~lL~~l~~~-----------~~~vav~vN~~iv~-r~~w~~~~L~~gD~iEIv~~V 64 (67)
T PRK07696 8 NQIEVPESVKTVAELLTHLELD-----------NKIVVVERNKDILQ-KDDHTDTSVFDGDQIEIVTFV 64 (67)
T ss_pred EEEEcCCCcccHHHHHHHcCCC-----------CCeEEEEECCEEeC-HHHcCceecCCCCEEEEEEEe
Confidence 57899999 7999998766433 23567889999995 55 899999999999843
No 25
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=97.06 E-value=0.0012 Score=51.95 Aligned_cols=52 Identities=25% Similarity=0.256 Sum_probs=41.3
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCC---CCCccCCCCEEEEeeC
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGD---PRCKLKMGDVVELTPA 450 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~---l~~~L~~GD~VeIi~~ 450 (488)
..+++|.|.|+.|+.-..+.. ...+.+.+||++||. .++.|++||.|||++.
T Consensus 6 ~~~~~~~~~tv~~ll~~l~~~-----------~~~v~v~vN~~iv~~~~~~~~~L~~gD~veii~~ 60 (64)
T TIGR01683 6 EPVEVEDGLTLAALLESLGLD-----------PRRVAVAVNGEIVPRSEWDDTILKEGDRIEIVTF 60 (64)
T ss_pred eEEEcCCCCcHHHHHHHcCCC-----------CCeEEEEECCEEcCHHHcCceecCCCCEEEEEEe
Confidence 588999999999998776433 134667899999952 3479999999999984
No 26
>PRK01777 hypothetical protein; Validated
Probab=96.98 E-value=0.0015 Score=55.73 Aligned_cols=57 Identities=16% Similarity=0.096 Sum_probs=40.0
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEee
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP 449 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~ 449 (488)
..+++|.|+|+.|..-+.+-...+. .+ .....-+-|||+.+ +++++|++||.|||..
T Consensus 19 ~~l~vp~GtTv~dal~~sgi~~~~p-ei---~~~~~~vgI~Gk~v-~~d~~L~dGDRVeIyr 75 (95)
T PRK01777 19 QRLTLQEGATVEEAIRASGLLELRT-DI---DLAKNKVGIYSRPA-KLTDVLRDGDRVEIYR 75 (95)
T ss_pred EEEEcCCCCcHHHHHHHcCCCccCc-cc---ccccceEEEeCeEC-CCCCcCCCCCEEEEec
Confidence 3678999999999998765321100 00 00111245899999 5999999999999996
No 27
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=96.98 E-value=0.0018 Score=50.77 Aligned_cols=51 Identities=24% Similarity=0.305 Sum_probs=40.1
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCC---CCccCCCCEEEEeeC
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDP---RCKLKMGDVVELTPA 450 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l---~~~L~~GD~VeIi~~ 450 (488)
..+++|.|+|+.|+.-..+.. ..+.+-+||+++|.. ++.|++||.|||++.
T Consensus 8 ~~~~~~~~~tl~~ll~~l~~~------------~~~~v~vN~~~v~~~~~~~~~L~~gD~vei~~~ 61 (65)
T PRK06944 8 QTLSLPDGATVADALAAYGAR------------PPFAVAVNGDFVARTQHAARALAAGDRLDLVQP 61 (65)
T ss_pred EEEECCCCCcHHHHHHhhCCC------------CCeEEEECCEEcCchhcccccCCCCCEEEEEee
Confidence 588999999999998665322 235668999999522 789999999999973
No 28
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=96.94 E-value=0.0021 Score=50.89 Aligned_cols=57 Identities=18% Similarity=0.254 Sum_probs=44.0
Q ss_pred EEeCCcceEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCC---CCCccCCCCEEEEeeCC
Q 011341 381 MIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGD---PRCKLKMGDVVELTPAI 451 (488)
Q Consensus 381 ~~~~~~~~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~---l~~~L~~GD~VeIi~~~ 451 (488)
..+| ..+++|.|.|+.|+--....+ ...+.+-+|+++||. -++.|++||.|||++..
T Consensus 4 ~vNg---~~~~~~~~~tl~~ll~~l~~~-----------~~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii~~v 63 (66)
T PRK08053 4 LFND---QPMQCAAGQTVHELLEQLNQL-----------QPGAALAINQQIIPREQWAQHIVQDGDQILLFQVI 63 (66)
T ss_pred EECC---eEEEcCCCCCHHHHHHHcCCC-----------CCcEEEEECCEEeChHHcCccccCCCCEEEEEEEc
Confidence 4455 588999999999998765332 245778899999941 45789999999999843
No 29
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=96.93 E-value=0.0022 Score=51.27 Aligned_cols=52 Identities=29% Similarity=0.348 Sum_probs=43.2
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCC---CCCccCCCCEEEEeeC
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGD---PRCKLKMGDVVELTPA 450 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~---l~~~L~~GD~VeIi~~ 450 (488)
...+++.+.|+.|+--..+... ..+.+.+||.+||. .++.|++||.|||++.
T Consensus 10 ~~~e~~~~~tv~dLL~~l~~~~-----------~~vav~vNg~iVpr~~~~~~~l~~gD~ievv~~ 64 (68)
T COG2104 10 KEVEIAEGTTVADLLAQLGLNP-----------EGVAVAVNGEIVPRSQWADTILKEGDRIEVVRV 64 (68)
T ss_pred EEEEcCCCCcHHHHHHHhCCCC-----------ceEEEEECCEEccchhhhhccccCCCEEEEEEe
Confidence 5889999999999987775431 45678999999932 8999999999999974
No 30
>PTZ00258 GTP-binding protein; Provisional
Probab=96.93 E-value=0.00063 Score=71.94 Aligned_cols=55 Identities=4% Similarity=-0.091 Sum_probs=43.3
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccc--------------cccCC--cccCCCCCccCCCCEEEEee
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELR--------------PRLNH--KAVGDPRCKLKMGDVVELTP 449 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~--------------akvN~--~~v~~l~~~L~~GD~VeIi~ 449 (488)
+...+|+|||+.|+|..||+|+. .+|.++.- ||--| +.+ ..+|.+++||+|++.-
T Consensus 316 raw~i~~Gsta~~aAg~IHsD~~------kgFi~Aev~~~~d~~~~g~~~~ak~~g~~r~e-GkdYiv~DGDIi~f~f 386 (390)
T PTZ00258 316 RCWTIQKGTKAPQAAGVIHSDFE------KGFICAEVMKYEDFLELGSEAAVKAEGKYRQE-GKDYVVQDGDIIFFKF 386 (390)
T ss_pred eEEEeCCCCcHHHHHhhhhhHHh------hCcEEEEECcHHHHHHcCCHHHHHhcCceeee-CCceEecCCCEEEEEe
Confidence 68899999999999999999974 33444422 44546 566 5999999999999875
No 31
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=96.87 E-value=0.0025 Score=51.11 Aligned_cols=51 Identities=27% Similarity=0.346 Sum_probs=41.9
Q ss_pred EEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEeeCC
Q 011341 389 VQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAI 451 (488)
Q Consensus 389 ~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~~~ 451 (488)
.+++|.|+|+.|+.-.++-. ...+.+.+||++|+ .++.|++||.|+|++..
T Consensus 17 ~~~~~~~~tv~~ll~~l~~~-----------~~~v~v~vNg~iv~-~~~~l~~gD~Veii~~V 67 (70)
T PRK08364 17 EIEWRKGMKVADILRAVGFN-----------TESAIAKVNGKVAL-EDDPVKDGDYVEVIPVV 67 (70)
T ss_pred EEEcCCCCcHHHHHHHcCCC-----------CccEEEEECCEECC-CCcCcCCCCEEEEEccc
Confidence 57889999999999876432 13466789999995 99999999999999854
No 32
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=96.85 E-value=0.0023 Score=50.53 Aligned_cols=52 Identities=21% Similarity=0.241 Sum_probs=41.6
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCC--CCCccCCCCEEEEeeC
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGD--PRCKLKMGDVVELTPA 450 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~--l~~~L~~GD~VeIi~~ 450 (488)
+.+.+|++.|+.|+.-..+-. ...+++-+|+.++|. .++.|++||.|||++.
T Consensus 8 ~~~~~~~~~tl~~ll~~l~~~-----------~~~vav~~N~~iv~r~~~~~~L~~gD~ieIv~~ 61 (65)
T PRK05863 8 EQVEVDEQTTVAALLDSLGFP-----------EKGIAVAVDWSVLPRSDWATKLRDGARLEVVTA 61 (65)
T ss_pred EEEEcCCCCcHHHHHHHcCCC-----------CCcEEEEECCcCcChhHhhhhcCCCCEEEEEee
Confidence 589999999999998776433 245778899998843 4567999999999984
No 33
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=96.85 E-value=0.00074 Score=69.00 Aligned_cols=55 Identities=18% Similarity=0.105 Sum_probs=47.4
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCcccc----ccccCCcccCCCCCccCCCCEEEEee
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEEL----RPRLNHKAVGDPRCKLKMGDVVELTP 449 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v----~akvN~~~v~~l~~~L~~GD~VeIi~ 449 (488)
+++-|.+||||.|++-+||.++- .+|.+|. .++-.|+.| .++|.|.++|+|+|+.
T Consensus 306 ~PlIlr~GsTV~Dvc~~IH~~l~------~~FryA~VWGkSvk~~~QrV-G~dHvLeD~DIV~I~~ 364 (365)
T COG1163 306 EPLILRRGSTVGDVCRKIHRDLV------ENFRYARVWGKSVKHPGQRV-GLDHVLEDEDIVEIHA 364 (365)
T ss_pred CCeEEeCCCcHHHHHHHHHHHHH------HhcceEEEeccCCCCCcccc-CcCcCccCCCeEEEee
Confidence 57889999999999999998863 4566664 789999999 6999999999999973
No 34
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=96.72 E-value=0.003 Score=71.07 Aligned_cols=80 Identities=21% Similarity=0.267 Sum_probs=65.0
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEeeCCCCccHH--------HH
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLT--------EY 459 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~~~~~~~~~--------~~ 459 (488)
..+++|+|.|+.|+|..+..+. ....++|+|||+++ +|++++..+..||+++..+..++. .+
T Consensus 14 ~~~~~~~g~t~~~ia~~~~~~~---------~~~iv~a~vn~~l~-dL~~~i~~d~~i~fv~~~~~~g~~iy~hS~~hlL 83 (639)
T PRK12444 14 SVKEFVKGITLEEIAGSISSSL---------KKKAVAGKVNDKLY-DLRRNLEEDAEVEIITIDSNEGVEIARHSAAHIL 83 (639)
T ss_pred CEEEecCCCCHHHHHHHhhhhc---------chheEEEEECCEEE-EcCcccCCCCeEEEecCCChHHHHHHHHHHHHHH
Confidence 4788999999999998875442 13568999999999 599999999999999977666655 35
Q ss_pred HHHHHHHhhhc-cccCCCC
Q 011341 460 REEIQRMYERG-LAVSNTG 477 (488)
Q Consensus 460 ~~~i~~~~~~~-~~~~~~~ 477 (488)
..++++.|+.. +++|++.
T Consensus 84 ~~A~~~~~~~~~~~i~~~~ 102 (639)
T PRK12444 84 AQAVKRLYGDVNLGVGPVI 102 (639)
T ss_pred HHHHHHHcCCcEEEeCCcC
Confidence 88899999876 7777764
No 35
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=96.66 E-value=0.0012 Score=69.14 Aligned_cols=56 Identities=9% Similarity=-0.009 Sum_probs=44.4
Q ss_pred ceEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCcccc--------------ccccCCccc-CCCCCccCCCCEEEEe
Q 011341 387 MSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEEL--------------RPRLNHKAV-GDPRCKLKMGDVVELT 448 (488)
Q Consensus 387 ~~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v--------------~akvN~~~v-~~l~~~L~~GD~VeIi 448 (488)
++...+|+|+|+.|+|+.||||+. .+|.+|. +||=.|++- -.-+|.+++||+|.|.
T Consensus 291 vrawti~~GstA~~aAg~IHsD~~------kgFI~AeVi~~~d~~~~g~~~~ak~~gk~rleGkdY~v~DGDIi~f~ 361 (364)
T PRK09601 291 VRAWTIKKGTTAPQAAGVIHTDFE------KGFIRAEVISYDDLIEYGSEAGAKEAGKVRLEGKDYIVQDGDVMHFR 361 (364)
T ss_pred EEEEEeCCCCchHHHhhcchhhHh------hccEEEEEecHHHHHHcCCHHHHHHccceeccCCceEecCCCEEEEE
Confidence 478899999999999999999974 4566666 677556532 1479999999999985
No 36
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=96.37 E-value=0.0071 Score=50.40 Aligned_cols=58 Identities=21% Similarity=0.239 Sum_probs=44.4
Q ss_pred EEEeCCcceEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCC---CCCccCCCCEEEEeeCC
Q 011341 380 IMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGD---PRCKLKMGDVVELTPAI 451 (488)
Q Consensus 380 ~~~~~~~~~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~---l~~~L~~GD~VeIi~~~ 451 (488)
+..+| ..++++.|.|+.||.-..+.+ ...+.+-+||++||. -++.|++||.|||+++.
T Consensus 21 I~VNG---~~~~~~~~~tl~~LL~~l~~~-----------~~~vAVevNg~iVpr~~w~~t~L~egD~IEIv~~V 81 (84)
T PRK06083 21 ISIND---QSIQVDISSSLAQIIAQLSLP-----------ELGCVFAINNQVVPRSEWQSTVLSSGDAISLFQAI 81 (84)
T ss_pred EEECC---eEEEcCCCCcHHHHHHHcCCC-----------CceEEEEECCEEeCHHHcCcccCCCCCEEEEEEEe
Confidence 44455 589999999999998765332 234667899999954 45889999999999843
No 37
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=96.32 E-value=0.008 Score=47.25 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=39.0
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCC----CCccCCCCEEEEeeCC
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDP----RCKLKMGDVVELTPAI 451 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l----~~~L~~GD~VeIi~~~ 451 (488)
+.+++ .++|+.|+--..+-+ ...+.+-+|+++|| . +++|++||.|||++..
T Consensus 8 ~~~~~-~~~tl~~Ll~~l~~~-----------~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V 62 (65)
T PRK06488 8 ETLQT-EATTLALLLAELDYE-----------GNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPM 62 (65)
T ss_pred eEEEc-CcCcHHHHHHHcCCC-----------CCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEec
Confidence 47778 468999998665322 13467889999995 5 8899999999999843
No 38
>PLN02908 threonyl-tRNA synthetase
Probab=96.25 E-value=0.0086 Score=67.99 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=64.3
Q ss_pred EEEEEEeCCcceEEecC-CCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEeeCCCCcc
Q 011341 377 VFVIMIENDKMSVQEFP-TSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKS 455 (488)
Q Consensus 377 i~v~~~~~~~~~~~~lp-~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~~~~~~~ 455 (488)
|-|.+++| ...+.| .|+||.|+|-.+..... ...+.|+|||++. +|+++|..+..||.++..+..+
T Consensus 52 i~i~~~dg---~~~~~~~~~tt~~~ia~~i~~~~~---------~~~v~a~Vng~l~-dL~~~l~~d~~le~l~~~~~eg 118 (686)
T PLN02908 52 IKVTLPDG---AVKDGKKWVTTPMDIAKEISKGLA---------NSALIAQVDGVLW-DMTRPLEGDCKLKLFKFDDDEG 118 (686)
T ss_pred eEEEeCCC---ceEeecCCCCCHHHHHHHhCccch---------hhcEEEEECCEEe-ecCccccCCCeeEEeccccHHH
Confidence 33444444 477888 45999999999865431 4678999999999 6999999999999999665555
Q ss_pred HH--------HHHHHHHHHhhhc-cccCC
Q 011341 456 LT--------EYREEIQRMYERG-LAVSN 475 (488)
Q Consensus 456 ~~--------~~~~~i~~~~~~~-~~~~~ 475 (488)
.. .+..++.+.| .+ +++||
T Consensus 119 ~~~y~hS~ahlL~~A~~~~~-~~~l~ig~ 146 (686)
T PLN02908 119 RDTFWHSSAHILGEALELEY-GCKLCIGP 146 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCeEEecC
Confidence 44 3588899999 56 87774
No 39
>PRK14707 hypothetical protein; Provisional
Probab=96.04 E-value=0.028 Score=68.60 Aligned_cols=107 Identities=20% Similarity=0.192 Sum_probs=81.7
Q ss_pred eeeccccChHHHHHHHhh----cCCCC----CCCCcceEEEEEeC---ChHHHHHHHHHHHhh-ccCCCCcccCcccCCC
Q 011341 199 VLCGRHKSLYSIHCKMLK----KKLTM----DEIHDIYGLRLIVE---NEEDCYQALRVVHQL-WAEVPGKMKDYITRPK 266 (488)
Q Consensus 199 ~v~~R~K~~~Si~~K~~r----k~~~~----~~i~Dl~giRIiv~---~~~dcy~vl~~i~~~-~~~~~~~~kDyI~~PK 266 (488)
....|.|+..|+.+|+.. ++.++ ..|.|.+..=|+.+ |...+..+++.+... |+.+ +++++-. .+
T Consensus 2306 GLe~RLKS~~SLkrKL~~~~~~~~~sleeAaa~VnDALRYTVVLpp~~Fva~~r~Il~aL~~qGy~~v--kvkN~F~-~~ 2382 (2710)
T PRK14707 2306 GTQHQLKSYSSLQEKLKQRVALKKQSLEEAAASVNDALRYSVVLEPQGFTAGLRAVLAALDDQGHARV--KLTNQFT-EY 2382 (2710)
T ss_pred chHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHhhhheeEEEEcCchhHHHHHHHHHHHHHHcCCeEE--EEeeccc-CC
Confidence 378899999999999963 45554 67999998888887 456778887777765 4433 4555443 34
Q ss_pred CCCccceeEEEEcCCeeeEEEEEeehhhhHHHHhhhhhhcccccC
Q 011341 267 FNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEG 311 (488)
Q Consensus 267 ~nGYqSlH~~v~~~~g~~~EIQIRT~~mh~~Ae~g~aah~~YK~~ 311 (488)
.++|..+++++..|+|..||||--|..--..-+. .|=.||+.
T Consensus 2383 ~~~YkGINvtL~~pdG~~FEIQFHT~qSF~LK~r---~HdLYKQ~ 2424 (2710)
T PRK14707 2383 SPSFKAINLTLRSPEGALWEIQFHTPETFALKER---FHDLYKRT 2424 (2710)
T ss_pred CCCccceEEEEEcCCCcEEEEEeccHHHHHHHHH---HHHHHHHH
Confidence 5799999999999999999999999877666654 45578864
No 40
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=95.42 E-value=0.022 Score=47.12 Aligned_cols=49 Identities=33% Similarity=0.438 Sum_probs=40.8
Q ss_pred EEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccc-cccCCcccCCCCCccCCCCEEEEee
Q 011341 389 VQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELR-PRLNHKAVGDPRCKLKMGDVVELTP 449 (488)
Q Consensus 389 ~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~-akvN~~~v~~l~~~L~~GD~VeIi~ 449 (488)
...++.++|+.|+.-.+|-. |..|+ ..|||+.| ++++.+++||.|.|.+
T Consensus 26 ~~~~~~~~tvkd~IEsLGVP-----------~tEV~~i~vNG~~v-~~~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 26 THPFDGGATVKDVIESLGVP-----------HTEVGLILVNGRPV-DFDYRLKDGDRVAVYP 75 (81)
T ss_pred EEecCCCCcHHHHHHHcCCC-----------hHHeEEEEECCEEC-CCcccCCCCCEEEEEe
Confidence 56899999999999988544 23443 46999999 5999999999999987
No 41
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=95.26 E-value=0.027 Score=46.20 Aligned_cols=59 Identities=24% Similarity=0.253 Sum_probs=42.2
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEeeCC
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAI 451 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~~~ 451 (488)
..+++|.|+|+.|+.-.+........ .....+..-||++.+ +.+++|++||.|+|++..
T Consensus 21 ~~~~~~~~~tv~~L~~~l~~~~p~l~----~~~~~~~vavN~~~v-~~~~~l~dgDeVai~Ppv 79 (82)
T PLN02799 21 MTLELPAGSTTADCLAELVAKFPSLE----EVRSCCVLALNEEYT-TESAALKDGDELAIIPPI 79 (82)
T ss_pred EEEECCCCCcHHHHHHHHHHHChhHH----HHhhCcEEEECCEEc-CCCcCcCCCCEEEEeCCC
Confidence 57889999999999877743321000 001234467999999 599999999999999743
No 42
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=95.25 E-value=0.032 Score=46.74 Aligned_cols=38 Identities=29% Similarity=0.284 Sum_probs=29.6
Q ss_pred CCcchhHHHHHHHHHHHHcC------CCHHHHHHHhhhcccccc
Q 011341 4 SGDPYLLHCVETAMLLAAIG------ANSTVVAAGLLHDTLDDA 41 (488)
Q Consensus 4 sG~Pyi~H~l~VA~iLa~lg------~D~~~i~AALLHDvvEDt 41 (488)
++++.+.|.+.|+.+...+. .......||||||+-...
T Consensus 1 ~~~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~~ 44 (124)
T smart00471 1 SDYHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPG 44 (124)
T ss_pred CCchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCcc
Confidence 36788999999999776543 345688999999997754
No 43
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=95.19 E-value=0.027 Score=45.55 Aligned_cols=60 Identities=27% Similarity=0.272 Sum_probs=43.5
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEeeCC
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAI 451 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~~~ 451 (488)
..+++|+|+|+.|+.-.+....+.. .......+.+-|||+.++ .+++|++||.|+|++..
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~~~~---~~~~~~~~~v~vNg~~v~-~~~~l~~gD~v~i~ppv 77 (80)
T cd00754 18 EELELPEGATVGELLDALEARYPGL---LEELLARVRIAVNGEYVR-LDTPLKDGDEVAIIPPV 77 (80)
T ss_pred EEEECCCCCcHHHHHHHHHHHCchH---HHhhhhcEEEEECCeEcC-CCcccCCCCEEEEeCCC
Confidence 3568899999999987764332110 001134567789999995 99999999999999743
No 44
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=95.11 E-value=0.029 Score=46.77 Aligned_cols=52 Identities=25% Similarity=0.197 Sum_probs=27.8
Q ss_pred eEEecCCCCcHHHHHHHh-----cCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEee
Q 011341 388 SVQEFPTSSTVMDLLERA-----GRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP 449 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i-----~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~ 449 (488)
-.++||.|+|+.|-.-+- ++++. ......=|=||.++ ++++|++||.|||..
T Consensus 16 ~~l~vp~GtTv~~Ai~~Sgi~~~~p~id---------l~~~~vGIfGk~~~-~d~~L~~GDRVEIYR 72 (84)
T PF03658_consen 16 LTLEVPEGTTVAQAIEASGILEQFPEID---------LEKNKVGIFGKLVK-LDTVLRDGDRVEIYR 72 (84)
T ss_dssp EEEEEETT-BHHHHHHHHTHHHH-TT-----------TTTSEEEEEE-S---TT-B--TT-EEEEE-
T ss_pred EEEECCCcCcHHHHHHHcCchhhCcccC---------cccceeeeeeeEcC-CCCcCCCCCEEEEec
Confidence 467899999999976532 33321 01111225688884 999999999999984
No 45
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=94.44 E-value=0.068 Score=55.06 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=41.3
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCC---CCCccCCCCEEEEee
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGD---PRCKLKMGDVVELTP 449 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~---l~~~L~~GD~VeIi~ 449 (488)
+.+++++|.|+.|+.-..+-+ ...+.+.+||++||. .++.|++||.|||++
T Consensus 8 k~~el~e~~TL~dLL~~L~i~-----------~~~VAVeVNgeIVpr~~w~~t~LkeGD~IEII~ 61 (326)
T PRK11840 8 EPRQVPAGLTIAALLAELGLA-----------PKKVAVERNLEIVPRSEYGQVALEEGDELEIVH 61 (326)
T ss_pred EEEecCCCCcHHHHHHHcCCC-----------CCeEEEEECCEECCHHHcCccccCCCCEEEEEE
Confidence 578999999999998766433 235677899999931 567999999999998
No 46
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=94.27 E-value=0.034 Score=44.53 Aligned_cols=57 Identities=32% Similarity=0.395 Sum_probs=43.1
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCC---CCccCCCCEEEEeeC
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDP---RCKLKMGDVVELTPA 450 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l---~~~L~~GD~VeIi~~ 450 (488)
..+.+|.|+|+.|+--.+........ ....+.+-|||+.++ . +++|++||.|.|++.
T Consensus 14 ~~~~~~~~~tv~~ll~~l~~~~p~~~-----~~~~~~v~vN~~~v~-~~~~~~~l~~gD~V~i~pp 73 (77)
T PF02597_consen 14 EEIEVPEGSTVRDLLEALAERYPELA-----LRDRVAVAVNGEIVP-DDGLDTPLKDGDEVAILPP 73 (77)
T ss_dssp EEEEESSTSBHHHHHHHHCHHTGGGH-----TTTTEEEEETTEEEG-GGTTTSBEETTEEEEEEES
T ss_pred eEEecCCCCcHHHHHHHHHhhccccc-----cCccEEEEECCEEcC-CccCCcCcCCCCEEEEECC
Confidence 46889999999999987744321000 113456789999995 7 999999999999984
No 47
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=93.34 E-value=0.11 Score=43.96 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHc----C--CCH-HHHHHHhhhcccccc
Q 011341 9 LLHCVETAMLLAAI----G--ANS-TVVAAGLLHDTLDDA 41 (488)
Q Consensus 9 i~H~l~VA~iLa~l----g--~D~-~~i~AALLHDvvEDt 41 (488)
+.|.+.|+.+...+ + .+. -..+||||||+=.-.
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk~~ 41 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGKIP 41 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTHHS
T ss_pred hhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCCCC
Confidence 68999999977654 3 222 277999999996654
No 48
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=92.39 E-value=0.22 Score=40.62 Aligned_cols=58 Identities=22% Similarity=0.307 Sum_probs=41.2
Q ss_pred eEEecCCC-CcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEeeC
Q 011341 388 SVQEFPTS-STVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPA 450 (488)
Q Consensus 388 ~~~~lp~G-sT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~~ 450 (488)
..+++|.+ +|+.|+.-.+....+.. ......+.+-||++.++ .+++|++||.|.|++-
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l----~~~~~~~~v~vn~~~v~-~~~~l~dgDevai~Pp 76 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPEL----AASRGQVMVAVNEEYVT-DDALLNEGDEVAFIPP 76 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchh----hhhccceEEEECCEEcC-CCcCcCCCCEEEEeCC
Confidence 36788976 99999987774332100 00113355779999995 9999999999999973
No 49
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.40 E-value=0.72 Score=39.18 Aligned_cols=64 Identities=23% Similarity=0.157 Sum_probs=39.1
Q ss_pred EEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEee---CCCCccHHH
Q 011341 389 VQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP---AIPDKSLTE 458 (488)
Q Consensus 389 ~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~---~~~~~~~~~ 458 (488)
-+.|+.|+||.|..-+=|-.--+. +-.+++|.= =|=++.+. ++.+|++||.|||.. +.|. +|..
T Consensus 20 ~v~v~egatV~dAi~~Sgll~~~~---~idl~~n~~-GI~~k~~k-l~~~l~dgDRVEIyRPLlaDPK-E~RR 86 (99)
T COG2914 20 RVQLQEGATVEDAILASGLLELFP---DIDLHENKV-GIYSKPVK-LDDELHDGDRVEIYRPLLADPK-EARR 86 (99)
T ss_pred EEEeccCcCHHHHHHhcchhhccc---cCCccccce-eEEccccC-ccccccCCCEEEEecccccChH-HHHH
Confidence 567999999999875422110000 111223321 13466774 999999999999995 4554 5653
No 50
>PRK09169 hypothetical protein; Validated
Probab=91.33 E-value=0.63 Score=58.19 Aligned_cols=121 Identities=19% Similarity=0.175 Sum_probs=84.1
Q ss_pred HHHHHHHhcCCceeeeeccccChHHHHHHHh----hcCCCC----CCCCcceEEEEEeC---ChHHHHHHHHHHHhh-cc
Q 011341 185 KLEQALKDKNISFLVLCGRHKSLYSIHCKML----KKKLTM----DEIHDIYGLRLIVE---NEEDCYQALRVVHQL-WA 252 (488)
Q Consensus 185 ~l~~~L~~~gi~~~~v~~R~K~~~Si~~K~~----rk~~~~----~~i~Dl~giRIiv~---~~~dcy~vl~~i~~~-~~ 252 (488)
.|+..+...|........|+|+..|+.+|+. +++.++ ..|.|.+-.=|+.+ |...+..+++.+... |.
T Consensus 1901 ~L~s~a~~~g~~L~Gle~RlKS~~SL~rKL~~~~~~~~~s~e~Aaa~VnDALRYtvvLp~~~Fva~~r~iv~~L~~~G~~ 1980 (2316)
T PRK09169 1901 MLRAAIEGIGGQLRGLAHRLKSEGSLFEKLRGLMAKKHLTPEEAAALVNDALRYSVVLPPQTFVAGYRRILGALDEQGHT 1980 (2316)
T ss_pred HHHHHHHHhcCCccchHhhhCCHHHHHHHHHHHHhccCCCHHHHHHhccceeeEEEecCCccHHHHHHHHHHHHHhCCCe
Confidence 3444444434322347889999999999997 455554 67999887777776 456777888887765 44
Q ss_pred CCCCcccCcccCCCCCCccceeEEE-EcCCeeeEEEEEeehhhhHHHHhhhhhhcccccC
Q 011341 253 EVPGKMKDYITRPKFNGYQSLHTVV-TGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEG 311 (488)
Q Consensus 253 ~~~~~~kDyI~~PK~nGYqSlH~~v-~~~~g~~~EIQIRT~~mh~~Ae~g~aah~~YK~~ 311 (488)
.+ +++++-. ...++|..+|+++ ..++|..+|||--|..--..-+. .|=.||+.
T Consensus 1981 ~V--kv~N~F~-~~~~~YkGVNv~l~~s~~g~~fEIQFHT~qSF~lK~r---~H~lYkq~ 2034 (2316)
T PRK09169 1981 RT--RVTNHFK-KRGPAFKGINVTLDATGEGVRLEIQFHTPQTFDLKER---FHDLYKQA 2034 (2316)
T ss_pred EE--EEEeeec-cCCCCccceEEeeecCCCCceEEEEecCHHHHHHHHH---hHHHHHHH
Confidence 33 2333222 2248999999999 67789999999999877666554 46678864
No 51
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=90.68 E-value=1.3 Score=37.56 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=26.7
Q ss_pred chhHHHHHHHHHHHHcCC--------CHHHHHHHhhhcccccc
Q 011341 7 PYLLHCVETAMLLAAIGA--------NSTVVAAGLLHDTLDDA 41 (488)
Q Consensus 7 Pyi~H~l~VA~iLa~lg~--------D~~~i~AALLHDvvEDt 41 (488)
+...|.+.|+.+...+.. .....+||||||+-+..
T Consensus 2 ~~~~Hs~~v~~~~~~~~~~~~~~~~~~~~l~~aaLlHDig~~~ 44 (145)
T cd00077 2 HRFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPG 44 (145)
T ss_pred chHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCcc
Confidence 567899999997765422 34688999999998854
No 52
>PRK14707 hypothetical protein; Provisional
Probab=90.03 E-value=0.75 Score=57.00 Aligned_cols=195 Identities=21% Similarity=0.238 Sum_probs=118.3
Q ss_pred HHhhh----cc--ccCCChHHHHHHHHHHHHHhhhhhcccChhhHH-HHHH--hhhhh---ccCcchH------HHHHHH
Q 011341 108 RLHNM----MT--LDALPLCKRQRFAKETLEIFVPLANRLGISTWK-VQLE--NLCFK---HLNPDQH------TELSSK 169 (488)
Q Consensus 108 RLhNm----rt--l~~~~~~k~~~~A~Etl~iyaPLA~rLGi~~ik-~ELe--dl~f~---~l~p~~y------~~i~~~ 169 (488)
++|++ +. +...+++.|+.+-.+..+.|....-=-|...|- |+=| ...+. .+.|+.- ... ..
T Consensus 2416 r~HdLYKQ~q~L~lqGAs~~~~ral~a~a~e~f~aVp~P~Gce~I~dW~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~r 2494 (2710)
T PRK14707 2416 RFHDLYKRTHALALGGASRAEQRTLQAPALEAFKRVASPPGCEEIDDWQEETVPALAGTPPALASEQTPVNAGASPA-HR 2494 (2710)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccCCCCCchhhhhhhhccCcccCcCCCCccccccccccccccHH-HH
Confidence 56664 33 456788889989889999998876655654332 2222 11211 1222100 011 12
Q ss_pred HHhh----hh--HHHHHHHHHHHHHHHHhcCCceeeeeccc---------cChHHHHHHHhhc---CCC----CCCCCcc
Q 011341 170 LVEC----FD--EAMVTSAIEKLEQALKDKNISFLVLCGRH---------KSLYSIHCKMLKK---KLT----MDEIHDI 227 (488)
Q Consensus 170 l~~~----~~--~~~i~~~~~~l~~~L~~~gi~~~~v~~R~---------K~~~Si~~K~~rk---~~~----~~~i~Dl 227 (488)
|... ++ ...++.+...+...|..++. +..-.||. |++.||.+|+.+. +.+ +..|.|.
T Consensus 2495 ~~~~a~~~~~~v~p~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Ks~~Si~RKI~~~~~~~ls~eqAaarVrDa 2573 (2710)
T PRK14707 2495 VFNAATGKQASLTPVLNTLADGLGARLWGNVR-YKASQGRIEQVQQAPFQKSLASIKDKIRRHLRAGMTAEQATQSVGDA 2573 (2710)
T ss_pred HHHHhhhcccccChHHHHHHHHhhhhhcccCc-cccccchhhhhhhcccCCCHHHHHHHHHHHHhcCCCHHHHHHHhhhh
Confidence 2111 11 12344444445444444332 11234565 9999999999753 333 3679998
Q ss_pred eEEEEEeC---ChHHHHHHHHHHHhh-ccCCCCcccCcccCCCCCCccceeEEEEcCCeeeEEEEEeehhhhHHHHhhhh
Q 011341 228 YGLRLIVE---NEEDCYQALRVVHQL-WAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFA 303 (488)
Q Consensus 228 ~giRIiv~---~~~dcy~vl~~i~~~-~~~~~~~~kDyI~~PK~nGYqSlH~~v~~~~g~~~EIQIRT~~mh~~Ae~g~a 303 (488)
+..=|+.+ |......+.+.|... |+.+ ++|++-..| .+.|..+-+++..++|..||||--|..--. +..+
T Consensus 2574 lRYtviLp~e~Fv~~v~~~~~~L~~~G~~~~--rvKNtw~~~-d~tY~GvN~~~r~~~g~~FEIQFHT~~Sf~-~K~~-- 2647 (2710)
T PRK14707 2574 LRYALELPSEGFVAKVQAAQDALRRQGMTCV--NLQNYFTSG-DGTYRGINASFTDAEGYAFEVQFHTAESFN-AKAQ-- 2647 (2710)
T ss_pred eeEEEEcCcchHHHHHHHHHHHHHhcCCeEE--EeeccccCC-CCcccceeeeEEcCCCCeEEEEeccHHHHH-HHHH--
Confidence 88888887 456777777777665 5544 677766543 467999999999999889999999976544 4444
Q ss_pred hhccccc
Q 011341 304 AHWRYKE 310 (488)
Q Consensus 304 ah~~YK~ 310 (488)
.|-.|+.
T Consensus 2648 tH~lYek 2654 (2710)
T PRK14707 2648 THLSYKR 2654 (2710)
T ss_pred hHHHHHh
Confidence 5667765
No 53
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=89.22 E-value=4.5 Score=42.31 Aligned_cols=133 Identities=20% Similarity=0.164 Sum_probs=65.3
Q ss_pred cchhHHHHHHHHHHH----HcCCCHH-HHHHHhhhccccccCCC------HHHHHh--HhhHHHHHHHHHhccccccchH
Q 011341 6 DPYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLDDAFLS------YDYIFR--TFGAGVADLVEGVSKLSQLSKL 72 (488)
Q Consensus 6 ~Pyi~H~l~VA~iLa----~lg~D~~-~i~AALLHDvvEDt~~t------~eel~~--~FG~~Va~lV~~vTk~~~~~~~ 72 (488)
+..+.|.++|+.+.. .++.|.+ .++||||||+-...... -.++.+ .|.++++.+|+....- .++..
T Consensus 186 e~l~~Hs~rVa~lA~~LA~~~~~D~~ll~aAALLHDIGK~k~~~~~H~~~Ga~iL~e~G~~e~i~~iIe~H~g~-G~~~~ 264 (339)
T PRK12703 186 DLLIRHVKTVYKLAMRIADCINADRRLVAAGALLHDIGRTKTNGIDHAVAGAEILRKENIDDRVVSIVERHIGA-GITSE 264 (339)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHCCCCHHHHHHHHHHhcc-CCCcc
Confidence 345799999998643 4577765 45668999996532211 123332 3456777777654421 11100
Q ss_pred HhhcccccchHHHHHHHHHHhhcCCchhhHHHHhhHHhhhccccCCChHHHHHHHHHHHHHhhhhhcccChhhHHHHHHh
Q 011341 73 ARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLEN 152 (488)
Q Consensus 73 ~r~~~~~~~~~~~e~lRkmlla~~D~rvvlIKLADRLhNmrtl~~~~~~k~~~~A~Etl~iyaPLA~rLGi~~ik~ELed 152 (488)
.. +...+..--..-......+|..||+|...... ++.+.+.+-..+. -++..++| +..|..|||.
T Consensus 265 ~~---------~~~gL~~~~~~P~TLEakIV~dADrL~~~~r~--v~~e~~~~k~~~~--~~~~~~~R--~~~l~~~~~~ 329 (339)
T PRK12703 265 EA---------QKLGLPVKDYVPETIEEMIVAHADNLFAGDKR--LNLKQVMDKYRKK--GLHDAAER--IKKLHEELSS 329 (339)
T ss_pred hh---------hccCCccccCCCCCHHHHHHHHHHHHhcCCCc--CCHHHHHHHHHhh--hhhHHHHH--HHHHHHHHHH
Confidence 00 00000000000014567899999999776542 4444433332222 11223333 4455555555
Q ss_pred hh
Q 011341 153 LC 154 (488)
Q Consensus 153 l~ 154 (488)
+|
T Consensus 330 ~~ 331 (339)
T PRK12703 330 IC 331 (339)
T ss_pred Hh
Confidence 44
No 54
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=87.55 E-value=1.1 Score=37.03 Aligned_cols=61 Identities=30% Similarity=0.268 Sum_probs=39.7
Q ss_pred EEecCCCCcHHHHHHHhcCCCCCC-CC---CCCCCccccccccCCcccCCCCC--ccCCCCEEEEeeCC
Q 011341 389 VQEFPTSSTVMDLLERAGRGSSRW-SP---YGFPLKEELRPRLNHKAVGDPRC--KLKMGDVVELTPAI 451 (488)
Q Consensus 389 ~~~lp~GsT~~DfAy~i~~~~~~~-~~---~g~~~~~~v~akvN~~~v~~l~~--~L~~GD~VeIi~~~ 451 (488)
.+++| |+|+.|+.-.+....... .. -+...+..+..-|||+.++ .+. +|++||.|.|++.-
T Consensus 19 ~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~-~~~~~~l~dgdev~i~Ppv 85 (88)
T TIGR01687 19 EIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVD-WGLGTELKDGDVVAIFPPV 85 (88)
T ss_pred EEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecC-ccCCCCCCCCCEEEEeCCC
Confidence 56778 999999987774332100 00 0001123356779999984 666 99999999999743
No 55
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=87.46 E-value=1 Score=44.19 Aligned_cols=39 Identities=28% Similarity=0.302 Sum_probs=30.6
Q ss_pred CCcchhHHHHHHHHHHH----HcCCCHH-HHHHHhhhccccccC
Q 011341 4 SGDPYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLDDAF 42 (488)
Q Consensus 4 sG~Pyi~H~l~VA~iLa----~lg~D~~-~i~AALLHDvvEDt~ 42 (488)
+|..-+.|+++||.+.. +.|.|.+ +..||||||+.--..
T Consensus 33 ~~~~~l~H~~~Va~lA~~Ia~~~g~D~~l~~~aaLLHDIg~~~~ 76 (222)
T COG1418 33 YGQHVLEHSLRVAYLAYRIAEEEGVDPDLALRAALLHDIGKAID 76 (222)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccccc
Confidence 67888999999998543 5688876 556789999987544
No 56
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=84.85 E-value=1.1 Score=36.63 Aligned_cols=58 Identities=24% Similarity=0.279 Sum_probs=37.1
Q ss_pred EecC-CCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEeeC
Q 011341 390 QEFP-TSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPA 450 (488)
Q Consensus 390 ~~lp-~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~~ 450 (488)
++++ .|+|+.|+--.+......+... .....+..-||++.+ +.+++|++||.|-|++-
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~~~~--~~~~~~~~aVN~~~~-~~~~~l~dgDeVai~PP 77 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRWALA--LEDGKLLAAVNQTLV-SFDHPLTDGDEVAFFPP 77 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccHHhh--hcCCCEEEEECCEEc-CCCCCCCCCCEEEEeCC
Confidence 3444 5899999876663322111000 001123456899998 59999999999999973
No 57
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=83.35 E-value=1.2 Score=41.47 Aligned_cols=34 Identities=47% Similarity=0.694 Sum_probs=28.1
Q ss_pred CCcch--hHHHHHHHHHHHHcCCCHHHHHHHhhhcc
Q 011341 4 SGDPY--LLHCVETAMLLAAIGANSTVVAAGLLHDT 37 (488)
Q Consensus 4 sG~Py--i~H~l~VA~iLa~lg~D~~~i~AALLHDv 37 (488)
+|+|. ..|.+.-|.+...-|.+.+.|+||||||+
T Consensus 25 ~ge~VTq~eHaLQ~AtlAerdGa~~~lVaaALLHDi 60 (186)
T COG4341 25 SGEPVTQLEHALQCATLAERDGADTALVAAALLHDI 60 (186)
T ss_pred ccCcchhhhhHHHHhHHHHhcCCcHHHHHHHHHHhH
Confidence 55654 58999999766677999999999999996
No 58
>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined []. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an alpha helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; PDB: 1NI3_A 1JAL_A 2DWQ_B 2DBY_A 2OHF_A.
Probab=82.75 E-value=0.76 Score=38.31 Aligned_cols=56 Identities=7% Similarity=0.036 Sum_probs=33.7
Q ss_pred ceEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccc--------------cccccCCccc-CCCCCccCCCCEEEEe
Q 011341 387 MSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEE--------------LRPRLNHKAV-GDPRCKLKMGDVVELT 448 (488)
Q Consensus 387 ~~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~--------------v~akvN~~~v-~~l~~~L~~GD~VeIi 448 (488)
+..=.+++|+|+-+.|-.||+|... +|-.+ ..+|-.|++- ..-+|.+++||+|.+.
T Consensus 12 vRaWti~~G~~Ap~aAG~IHsDfek------gFI~Aevi~~~d~~~~~s~~~~k~~Gk~r~eGK~YivqDGDIi~f~ 82 (84)
T PF06071_consen 12 VRAWTIRKGTTAPQAAGVIHSDFEK------GFIRAEVISYDDFVEYGSEAAAKEAGKLRLEGKDYIVQDGDIIHFR 82 (84)
T ss_dssp EEEEEEETT-BHHHHHHCC-THHHH------HEEEEEEEEHHHHHHHTSHHHHHHTT-SEEEETT-B--TTEEEEEE
T ss_pred EEEEEccCCCCHHHhHhHHHHHHHh------hceEEEEEcHHHHHHcCCHHHHHHcCCccccCCceeEeCCCEEEEE
Confidence 4667899999999999999998631 12121 1345556521 1378999999999874
No 59
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=82.01 E-value=10 Score=37.47 Aligned_cols=105 Identities=15% Similarity=0.145 Sum_probs=54.5
Q ss_pred chhHHHHHHHHHHHH--------cCCCHH-HHHHHhhhcccc-ccCCCHHHHH-hHhhHHHH-HHHHHhccccccchHHh
Q 011341 7 PYLLHCVETAMLLAA--------IGANST-VVAAGLLHDTLD-DAFLSYDYIF-RTFGAGVA-DLVEGVSKLSQLSKLAR 74 (488)
Q Consensus 7 Pyi~H~l~VA~iLa~--------lg~D~~-~i~AALLHDvvE-Dt~~t~eel~-~~FG~~Va-~lV~~vTk~~~~~~~~r 74 (488)
.-+.|.++|...... ++.|.+ ..+||||||+-- +.......+. +..|...| .++...+ ..+.
T Consensus 55 ~~~~Hs~RV~~~a~~ia~~e~~~~~~D~evl~lAALLHDIG~~~~~~~~~~~~fe~~ga~~A~~~L~~~~---G~~~--- 128 (228)
T TIGR03401 55 ETYNHSLRVYYYGLAIARDQFPEWDLSDETWFLTCLLHDIGTTDENMTATKMSFEFYGGILALDVLKEQT---GANQ--- 128 (228)
T ss_pred hhhHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhccccccCCcccCCHHHHHHHHHHHHHHHCC---CCCH---
Confidence 456899999864332 367765 557889999865 2222112222 23344333 2333221 1111
Q ss_pred hcccccchHHHHHHHHHHh-----hc-C--CchhhHHHHhhHHhhhcc-ccCCChHHHHH
Q 011341 75 ENNTASKTVEADRLHTMFL-----AM-A--DARAVLIKLADRLHNMMT-LDALPLCKRQR 125 (488)
Q Consensus 75 ~~~~~~~~~~~e~lRkmll-----a~-~--D~rvvlIKLADRLhNmrt-l~~~~~~k~~~ 125 (488)
.+.+.+..... .. . ++.+.||..||+++++-. ...++++.+..
T Consensus 129 --------~~~~~V~~aI~~H~~~~~~~~~~~e~~lvq~Ad~lDa~Ga~~~~~~~~~~~~ 180 (228)
T TIGR03401 129 --------DQAEAVAEAIIRHQDLGVDGTITTLGQLLQLATIFDNVGANTDLVHPDTVDA 180 (228)
T ss_pred --------HHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHhHccCChhhCCHHHHHH
Confidence 11222221111 11 1 457899999999999864 34566665543
No 60
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=81.02 E-value=0.61 Score=49.01 Aligned_cols=47 Identities=11% Similarity=0.098 Sum_probs=35.3
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEE
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVV 445 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~V 445 (488)
|....+.|||++||+|.||++. +..++.|. +.+.. .-+|.+++||++
T Consensus 320 Dfe~~fi~aevi~~~d~i~~~~---------~~~Akeag-~~r~~-GkdY~vqdGDVi 366 (372)
T COG0012 320 DFEKGFIRAEVISYADLIHYGG---------EAAAKEAG-KRRLE-GKDYIVQDGDVI 366 (372)
T ss_pred chhhccccceEeeHHHHHhcCc---------HHHHHHhc-ceeec-cccceecCCCEE
Confidence 4678899999999999999871 23344443 33336 599999999999
No 61
>PRK10119 putative hydrolase; Provisional
Probab=77.99 E-value=8.7 Score=38.05 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHH----cCCCHH-HHHHHhhhcccc
Q 011341 9 LLHCVETAMLLAA----IGANST-VVAAGLLHDTLD 39 (488)
Q Consensus 9 i~H~l~VA~iLa~----lg~D~~-~i~AALLHDvvE 39 (488)
+.|..+|...... -+.|.. +.+||||||+..
T Consensus 27 ~~Hi~RV~~lA~~Ia~~e~~D~~vv~lAAlLHDv~d 62 (231)
T PRK10119 27 ICHFRRVWATAQKLAADDDVDMLVVLTACYFHDIVS 62 (231)
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcch
Confidence 5788888764433 366654 668999999974
No 62
>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=77.81 E-value=2 Score=35.73 Aligned_cols=55 Identities=5% Similarity=-0.015 Sum_probs=39.1
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccc--------------cccccCCccc-CCCCCccCCCCEEEEe
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEE--------------LRPRLNHKAV-GDPRCKLKMGDVVELT 448 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~--------------v~akvN~~~v-~~l~~~L~~GD~VeIi 448 (488)
..-.+++|+|+-+.|-.||+|+.. +|..+ .+||-.|++- ..-+|.+++||++.+.
T Consensus 13 RAWti~~g~tAp~AAG~IHsDfek------gFIrAeVi~~~d~i~~g~~~~ak~~Gkir~eGK~Yiv~DGDi~~f~ 82 (83)
T cd04867 13 RAWTIRKGTKAPQAAGVIHTDFEK------GFIRAEVMKYEDLVELGSEAAAKEAGKYRQEGKDYVVQDGDIIFFK 82 (83)
T ss_pred EEEEccCCCChHHhcCCccccccc------CcEEEEEEcHHHHHHcCCHHHHHHcChhhhhCCceEeeCCeEEEEE
Confidence 567899999999999999999741 22222 1355556532 1367999999998763
No 63
>PRK03826 5'-nucleotidase; Provisional
Probab=77.04 E-value=13 Score=35.86 Aligned_cols=95 Identities=15% Similarity=0.176 Sum_probs=49.5
Q ss_pred cchhHHHHHHHHHH---HH-----c--CCCH-HHHHHHhhhccccc-c-CC-CH-----HHHHhHhhHHHHHHHHHhccc
Q 011341 6 DPYLLHCVETAMLL---AA-----I--GANS-TVVAAGLLHDTLDD-A-FL-SY-----DYIFRTFGAGVADLVEGVSKL 66 (488)
Q Consensus 6 ~Pyi~H~l~VA~iL---a~-----l--g~D~-~~i~AALLHDvvED-t-~~-t~-----eel~~~FG~~Va~lV~~vTk~ 66 (488)
+..-.|...||.+. +. . +.|. .++..||+||+.|- | ++ |+ ..+.+.+.+-=....+.+..
T Consensus 27 EsVAeHs~~vAliA~~La~i~~~~~~~~vd~~rv~~~aL~HDl~E~~tGDi~tPvK~~~~~~~~~~~~~E~~a~~~l~~- 105 (195)
T PRK03826 27 ENVSEHSLQVAMVAHALAVIKNRKFGGNLNAERIALLAMYHDASEVLTGDLPTPVKYFNPEIAHEYKKIEKIAEQKLLD- 105 (195)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcchHHHhcCCcccccccccchhHHHHHHHHHHHHHHHHH-
Confidence 45668999999753 32 2 2454 46778999999984 2 22 22 23333333211111121111
Q ss_pred cccchHHhhcccccchHHHHHHHHHHhhc--CCchhhHHHHhhHHhhhc
Q 011341 67 SQLSKLARENNTASKTVEADRLHTMFLAM--ADARAVLIKLADRLHNMM 113 (488)
Q Consensus 67 ~~~~~~~r~~~~~~~~~~~e~lRkmlla~--~D~rvvlIKLADRLhNmr 113 (488)
.++. ...+.++.++... ..+.+.+||.||+|.-+-
T Consensus 106 -~LP~-----------~l~~~~~~~~~e~e~~~~Ea~lvK~aDkL~a~l 142 (195)
T PRK03826 106 -MLPE-----------ELQEDFRPLLDSHAASEEEKAIVKQADALCAYL 142 (195)
T ss_pred -hCCH-----------HHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHH
Confidence 1111 1223444444333 256889999999997643
No 64
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B.
Probab=74.00 E-value=6.3 Score=38.46 Aligned_cols=100 Identities=12% Similarity=0.108 Sum_probs=50.0
Q ss_pred chhHHHHHHHHHHHHc-------C--CCH-HHHHHHhhhccccccCCCHHHHH---hHhhHHHHHHHHHhccccccchHH
Q 011341 7 PYLLHCVETAMLLAAI-------G--ANS-TVVAAGLLHDTLDDAFLSYDYIF---RTFGAGVADLVEGVSKLSQLSKLA 73 (488)
Q Consensus 7 Pyi~H~l~VA~iLa~l-------g--~D~-~~i~AALLHDvvEDt~~t~eel~---~~FG~~Va~lV~~vTk~~~~~~~~ 73 (488)
..-.|...||.+..-+ | .|. .....||.||..|-.- .+|. +.+.++...++..|.+.-.-..+.
T Consensus 29 nVA~HSf~Va~iA~~Lg~iee~~G~~vd~~~lyekAL~HD~~E~Ft---GDI~TPVKy~tPelr~~~~~VE~~m~~~~i~ 105 (215)
T PF12917_consen 29 NVAEHSFKVAMIAQFLGDIEEQFGNEVDWKELYEKALNHDYPEIFT---GDIKTPVKYATPELREMLAQVEEEMTENFIK 105 (215)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTGGGGTS-------S-SSSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCccCHHHHHHHHhccccHHHHc---CCCCCcccccCHHHHHHHHHHHHHHHHHHHH
Confidence 3457999998865432 3 344 3457899999999521 1111 233344444443333321100000
Q ss_pred hhcccccchHHHHHHHHHHhhcC--CchhhHHHHhhHHhhhc
Q 011341 74 RENNTASKTVEADRLHTMFLAMA--DARAVLIKLADRLHNMM 113 (488)
Q Consensus 74 r~~~~~~~~~~~e~lRkmlla~~--D~rvvlIKLADRLhNmr 113 (488)
. . -.....+.+|.++.--. .+...+|+.||.++-+-
T Consensus 106 ~--~--iP~e~q~~Y~~~l~E~KDdt~EG~Iv~~ADkidal~ 143 (215)
T PF12917_consen 106 K--E--IPEEFQEAYRRRLKEGKDDTLEGQIVKAADKIDALY 143 (215)
T ss_dssp H--H--S-GGGHHHHHHHHS---SSSHHHHHHHHHHHHHHHH
T ss_pred h--h--CCHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHH
Confidence 0 0 00112345666655443 38999999999998764
No 65
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=73.53 E-value=2.8 Score=32.10 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=20.4
Q ss_pred ccccCCcccCCCCCccCCCCEEEE
Q 011341 424 RPRLNHKAVGDPRCKLKMGDVVEL 447 (488)
Q Consensus 424 ~akvN~~~v~~l~~~L~~GD~VeI 447 (488)
.+.|||+.+...++.|+.||.|+|
T Consensus 35 ~V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 35 EVLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred CEEECCEEccCCCCCCCCCCEEEe
Confidence 368999988447999999999986
No 66
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=71.49 E-value=7.9 Score=32.81 Aligned_cols=61 Identities=18% Similarity=0.112 Sum_probs=38.9
Q ss_pred EecC--CCCcHHHHHHHhcCCCCCCC----CCCCCCccccccccCCcccC---CCCCccCCCCEEEEeeC
Q 011341 390 QEFP--TSSTVMDLLERAGRGSSRWS----PYGFPLKEELRPRLNHKAVG---DPRCKLKMGDVVELTPA 450 (488)
Q Consensus 390 ~~lp--~GsT~~DfAy~i~~~~~~~~----~~g~~~~~~v~akvN~~~v~---~l~~~L~~GD~VeIi~~ 450 (488)
..+| .|+|+.|+--.+-....... .-+..+...+-+-|||+-+. .++++|++||.|.|++.
T Consensus 21 ~~~~~~~~~tV~dll~~L~~~~~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~ 90 (94)
T cd01764 21 VVLDGEKPVTVGDLLDYVASNLLEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFIST 90 (94)
T ss_pred EeccCCCCCcHHHHHHHHHHhCchhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECC
Confidence 4556 68999999865522210000 00112344566789999762 37899999999999974
No 67
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=71.16 E-value=6.5 Score=30.65 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=25.0
Q ss_pred CcchhHHHHHHHHHHH----HcCCCHH-HHHHHhhhcccc
Q 011341 5 GDPYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLD 39 (488)
Q Consensus 5 G~Pyi~H~l~VA~iLa----~lg~D~~-~i~AALLHDvvE 39 (488)
+.+-..|.+.|+.... .+|+|.+ ...||||||+-.
T Consensus 2 ~~~~~~H~~~v~~~a~~la~~~~~~~~~l~~AalLHDiG~ 41 (80)
T TIGR00277 2 GQNVLQHSLEVAKLAEALARELGLDVELARRGALLHDIGK 41 (80)
T ss_pred CchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHccCC
Confidence 3455789998888654 3467764 677999999744
No 68
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=69.76 E-value=3.2 Score=34.37 Aligned_cols=29 Identities=28% Similarity=0.213 Sum_probs=24.9
Q ss_pred cccccccCCcccCCCCCccCCCCEEEEeeC
Q 011341 421 EELRPRLNHKAVGDPRCKLKMGDVVELTPA 450 (488)
Q Consensus 421 ~~v~akvN~~~v~~l~~~L~~GD~VeIi~~ 450 (488)
.++.+.+|...+ +++++|++||.|-|++.
T Consensus 52 ~~v~~~~~~~~~-~~~t~L~dGDeVa~~PP 80 (84)
T COG1977 52 IVVNAANNEFLV-GLDTPLKDGDEVAFFPP 80 (84)
T ss_pred ceEEeeeceeec-cccccCCCCCEEEEeCC
Confidence 456778889898 59999999999999974
No 69
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=68.84 E-value=2.4 Score=30.75 Aligned_cols=22 Identities=45% Similarity=0.686 Sum_probs=19.5
Q ss_pred ccccCCcccCCCCCccCCCCEE
Q 011341 424 RPRLNHKAVGDPRCKLKMGDVV 445 (488)
Q Consensus 424 ~akvN~~~v~~l~~~L~~GD~V 445 (488)
+++|||+.+...++.++.||+|
T Consensus 27 ~V~VNg~~v~~~~~~v~~~d~I 48 (48)
T PF01479_consen 27 RVKVNGKVVKDPSYIVKPGDVI 48 (48)
T ss_dssp TEEETTEEESSTTSBESTTEEE
T ss_pred EEEECCEEEcCCCCCCCCcCCC
Confidence 4799999996699999999987
No 70
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=67.39 E-value=6.3 Score=37.74 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=28.5
Q ss_pred cchhHHHHHHHHHHHH----cCCCH-HHHHHHhhhccccccC
Q 011341 6 DPYLLHCVETAMLLAA----IGANS-TVVAAGLLHDTLDDAF 42 (488)
Q Consensus 6 ~Pyi~H~l~VA~iLa~----lg~D~-~~i~AALLHDvvEDt~ 42 (488)
++-+.|+++||....+ +++|. .+-+||+|||.--+-+
T Consensus 16 ~kR~~H~l~V~~~A~~LA~~y~~d~~kA~~AgilHD~aK~~p 57 (187)
T COG1713 16 EKRFEHCLGVAETAIELAEAYGLDPEKAYLAGILHDIAKELP 57 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCC
Confidence 4568999999986543 47776 4789999999987644
No 71
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=66.46 E-value=3.1 Score=44.74 Aligned_cols=30 Identities=27% Similarity=0.253 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHc----CC--CH--------HHHHHHhhhccc
Q 011341 9 LLHCVETAMLLAAI----GA--NS--------TVVAAGLLHDTL 38 (488)
Q Consensus 9 i~H~l~VA~iLa~l----g~--D~--------~~i~AALLHDvv 38 (488)
+.|+++|..+...+ +. +. .+.+||||||+=
T Consensus 53 FeHSLGV~~la~~~~~~l~~~~~~~~~~~~~~~~~~AALLHDIG 96 (421)
T COG1078 53 FEHSLGVYHLARRLLEHLEKNSEEEIDEEERLLVRLAALLHDIG 96 (421)
T ss_pred cchhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHccC
Confidence 68999999876533 21 11 489999999973
No 72
>PF13023 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B.
Probab=65.90 E-value=17 Score=33.86 Aligned_cols=96 Identities=20% Similarity=0.238 Sum_probs=50.8
Q ss_pred CcchhHHHHHHHHHH---H-HcC--CCH-HHHHHHhhhccccc-c-CCCHHH-H-HhHhhHHHHHHHHHhccccccchHH
Q 011341 5 GDPYLLHCVETAMLL---A-AIG--ANS-TVVAAGLLHDTLDD-A-FLSYDY-I-FRTFGAGVADLVEGVSKLSQLSKLA 73 (488)
Q Consensus 5 G~Pyi~H~l~VA~iL---a-~lg--~D~-~~i~AALLHDvvED-t-~~t~ee-l-~~~FG~~Va~lV~~vTk~~~~~~~~ 73 (488)
.+..-.|...||.+. + ..+ .|. .++..||+||+.|- | +++.-. + ...+-..-...++.+... ++.
T Consensus 20 ~EsVAeHS~~vA~~a~~la~~~~~~~d~~k~~~~aL~HDl~E~~~GDi~~~~~~~~~~~~~~E~~a~~~l~~~--Lp~-- 95 (165)
T PF13023_consen 20 PESVAEHSWRVALIALLLAEEAGPDLDIEKVVKMALFHDLPEAITGDIPPPDGVDKEEKEEREEAAIEELFSL--LPE-- 95 (165)
T ss_dssp G-BHHHHHHHHHHHHHHHHHHHH-HC-HHHHHHHHHHTTTTHHHH----HHH-CCHHHHHHHHHHHHHHHCTT--SSC--
T ss_pred CccHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHhhccchhhhcCCCCCcccchHHHHHHHHHHHHHHHHHH--hhh--
Confidence 356678999998753 3 234 665 58888999999994 2 233221 1 122222222333333222 111
Q ss_pred hhcccccchHHHHHHHHHHhh---cCCchhhHHHHhhHHhhhc
Q 011341 74 RENNTASKTVEADRLHTMFLA---MADARAVLIKLADRLHNMM 113 (488)
Q Consensus 74 r~~~~~~~~~~~e~lRkmlla---~~D~rvvlIKLADRLhNmr 113 (488)
...+.++.++.- ...+.+.++|-+|+|.-+-
T Consensus 96 ---------~l~~~~~~l~~E~e~~~s~ea~~vk~~D~l~~~l 129 (165)
T PF13023_consen 96 ---------ELQEELKELWEEFEEGESPEAKLVKAADKLEPLL 129 (165)
T ss_dssp ---------HHHHHHHHHHHHHHHT-SHHHHHHHHHHHHHHHH
T ss_pred ---------hHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhHHH
Confidence 112334444332 2378999999999997654
No 73
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=65.81 E-value=6.6 Score=36.09 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=25.4
Q ss_pred cchhHHHHHHHHHHH----HcCCCH-HHHHHHhhhcccc
Q 011341 6 DPYLLHCVETAMLLA----AIGANS-TVVAAGLLHDTLD 39 (488)
Q Consensus 6 ~Pyi~H~l~VA~iLa----~lg~D~-~~i~AALLHDvvE 39 (488)
+.-+.|.+.||.+.. .++.|+ ..-+||||||+=.
T Consensus 7 ~~r~~Hsl~Va~~a~~lA~~~~~d~e~a~~AGLLHDIGk 45 (158)
T TIGR00488 7 EHRYQHCLGVGQTAKQLAEANKLDSKKAEIAGAYHDLAK 45 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhc
Confidence 345789999998543 346654 5788999999876
No 74
>PRK00106 hypothetical protein; Provisional
Probab=64.98 E-value=7.1 Score=43.32 Aligned_cols=37 Identities=35% Similarity=0.472 Sum_probs=28.6
Q ss_pred CCcchhHHHHHHHHHH----HHcCCC-HHHHHHHhhhccccc
Q 011341 4 SGDPYLLHCVETAMLL----AAIGAN-STVVAAGLLHDTLDD 40 (488)
Q Consensus 4 sG~Pyi~H~l~VA~iL----a~lg~D-~~~i~AALLHDvvED 40 (488)
.|...+.|.++||.+. ..+|+| ...-.||||||+=.-
T Consensus 347 y~qnl~~HSv~VA~lA~~lA~~lgld~e~a~~AGLLHDIGK~ 388 (535)
T PRK00106 347 YGQNVLRHSVEVGKLAGILAGELGENVALARRAGFLHDMGKA 388 (535)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCc
Confidence 3556789999999854 367888 567889999998554
No 75
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only]
Probab=61.73 E-value=46 Score=31.98 Aligned_cols=98 Identities=19% Similarity=0.174 Sum_probs=52.3
Q ss_pred CCCcchhHHHHHHHHHHH-------HcC--CC-HHHHHHHhhhccccc--cCCC--HHHHHhHhhHHHHHHHHHhccccc
Q 011341 3 ASGDPYLLHCVETAMLLA-------AIG--AN-STVVAAGLLHDTLDD--AFLS--YDYIFRTFGAGVADLVEGVSKLSQ 68 (488)
Q Consensus 3 ~sG~Pyi~H~l~VA~iLa-------~lg--~D-~~~i~AALLHDvvED--t~~t--~eel~~~FG~~Va~lV~~vTk~~~ 68 (488)
..++....|...||.+.- ..| .| ...+..||+||..|- ++++ ............-...+.+.+..-
T Consensus 29 ~~~eSvaeHs~~va~la~~la~~~~~~~~~vn~~k~~~~AL~HD~~E~~~GDi~tp~k~~~~~~~~~~~e~e~~~~~~~~ 108 (193)
T COG1896 29 WNPESVAEHSFRVAILALLLADILNAKGGEVNPEKVALMALVHDLPEALTGDIPTPVKYARAGLYKEEEEAEEAAIHLLF 108 (193)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHhcccHHHHhCCCCCchhhhcchHHHHHHHHHHHHHHccc
Confidence 345667789888886432 223 24 347889999999995 2332 122222333333332333222111
Q ss_pred -cchHHhhcccccchHHHHHHHHHHhhcCCchhhHHHHhhHHhhh
Q 011341 69 -LSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNM 112 (488)
Q Consensus 69 -~~~~~r~~~~~~~~~~~e~lRkmlla~~D~rvvlIKLADRLhNm 112 (488)
++. .-.+-+|.. ..-.+..+.+||.||+|..+
T Consensus 109 ~~p~-----------e~~~~~~~~-~~~~s~ea~~vk~aDkl~~~ 141 (193)
T COG1896 109 GLPE-----------ELLELFREY-EKRSSLEARIVKDADKLELL 141 (193)
T ss_pred CCcH-----------HHHHHHHHH-HccCCHHHHHHHHHHHHHHH
Confidence 010 012223332 22347899999999999887
No 76
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=59.78 E-value=9.5 Score=31.34 Aligned_cols=64 Identities=25% Similarity=0.271 Sum_probs=35.4
Q ss_pred EEEeCCcceEEecCCCCcHHHHHHHhcCCCCCCCCCC---C---CCcccc--ccccCCcc-cCCCCCccCCCCEEE
Q 011341 380 IMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYG---F---PLKEEL--RPRLNHKA-VGDPRCKLKMGDVVE 446 (488)
Q Consensus 380 ~~~~~~~~~~~~lp~GsT~~DfAy~i~~~~~~~~~~g---~---~~~~~v--~akvN~~~-v~~l~~~L~~GD~Ve 446 (488)
|..+| ..++.++|.|+++++.+.+..+...-..| . ....|- -+.|||+. ++.=.+++++|..|+
T Consensus 6 i~idG---~~v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~g~~~v~AC~t~v~~GM~V~ 78 (82)
T PF13510_consen 6 ITIDG---KPVEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVDGEPNVRACSTPVEDGMVVE 78 (82)
T ss_dssp EEETT---EEEEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEESSEEEEETTT-B--TTEEEE
T ss_pred EEECC---EEEEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEECCCcceEcccCCCcCCcEEE
Confidence 44566 57899999999999998754432110000 0 001111 26789987 655779999998876
No 77
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=59.71 E-value=12 Score=34.84 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=34.1
Q ss_pred cchhHHHHHHHHHHH----HcC-----CCH-HHHHHHhhhccccccCC--C----HHHHHhH--hhHHHHHHHHH
Q 011341 6 DPYLLHCVETAMLLA----AIG-----ANS-TVVAAGLLHDTLDDAFL--S----YDYIFRT--FGAGVADLVEG 62 (488)
Q Consensus 6 ~Pyi~H~l~VA~iLa----~lg-----~D~-~~i~AALLHDvvEDt~~--t----~eel~~~--FG~~Va~lV~~ 62 (488)
+..+.|.+.|+.+.. .++ .|. ...+||||||+-..... . -.++.+. |.++++.+|..
T Consensus 12 ~~~~~Hs~~Va~~A~~ia~~~~~~~~~~d~~~l~~aaLLHDIGK~~~~~~~H~~~G~~iL~~~g~~~~i~~iI~~ 86 (164)
T TIGR00295 12 ESVRRHCLAVARVAMELAENIRKKGHEVDMDLVLKGALLHDIGRARTHGFEHFVKGAEILRKEGVDEKIVRIAER 86 (164)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 456789999998543 344 443 57789999998653211 1 1123333 34567777753
No 78
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=59.38 E-value=44 Score=34.33 Aligned_cols=66 Identities=12% Similarity=0.102 Sum_probs=40.6
Q ss_pred EEEEeCCcceEEec-CCCCcHHHHHHHhcCCCCCC-CCCC-CCCcccc--ccccCCc--ccCCCCCccCCCCEEEE
Q 011341 379 VIMIENDKMSVQEF-PTSSTVMDLLERAGRGSSRW-SPYG-FPLKEEL--RPRLNHK--AVGDPRCKLKMGDVVEL 447 (488)
Q Consensus 379 v~~~~~~~~~~~~l-p~GsT~~DfAy~i~~~~~~~-~~~g-~~~~~~v--~akvN~~--~v~~l~~~L~~GD~VeI 447 (488)
.++.|| ..+++ |+|.|++|.|-+.|-.+... ..-+ .+...|- -+.|+|+ ++++=.+++++|-+|+-
T Consensus 70 ~I~IDG---k~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEVeG~~~lv~AC~tpV~eGM~V~T 142 (297)
T PTZ00305 70 IMFVNK---RPVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQVDGTQNLVVSCATVALPGMSIIT 142 (297)
T ss_pred EEEECC---EEEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEECCCcCcccccCCcCCCCCEEEe
Confidence 344566 57888 99999999999876554321 0000 0011121 1456765 66667899999998773
No 79
>PRK12705 hypothetical protein; Provisional
Probab=52.98 E-value=15 Score=40.58 Aligned_cols=36 Identities=39% Similarity=0.532 Sum_probs=27.3
Q ss_pred CcchhHHHHHHHHHHH----HcCCCHH-HHHHHhhhccccc
Q 011341 5 GDPYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLDD 40 (488)
Q Consensus 5 G~Pyi~H~l~VA~iLa----~lg~D~~-~i~AALLHDvvED 40 (488)
|...+.|.++||.+.. .+|+|++ ...||||||+=.-
T Consensus 321 gqnvl~HSl~VA~lA~~LA~~lGld~d~a~~AGLLHDIGK~ 361 (508)
T PRK12705 321 GQNVLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGKS 361 (508)
T ss_pred CchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCCc
Confidence 4456889999998553 6688754 6789999999663
No 80
>smart00363 S4 S4 RNA-binding domain.
Probab=52.53 E-value=10 Score=27.39 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=20.9
Q ss_pred ccccCCcccCCCCCccCCCCEEEEee
Q 011341 424 RPRLNHKAVGDPRCKLKMGDVVELTP 449 (488)
Q Consensus 424 ~akvN~~~v~~l~~~L~~GD~VeIi~ 449 (488)
+..|||+.+...++.|+.||.|++--
T Consensus 27 ~i~vng~~~~~~~~~l~~gd~i~~~~ 52 (60)
T smart00363 27 RVKVNGKKVTKPSYIVKPGDVISVRG 52 (60)
T ss_pred CEEECCEEecCCCeEeCCCCEEEEcc
Confidence 35899998834899999999998743
No 81
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=52.42 E-value=84 Score=30.84 Aligned_cols=76 Identities=16% Similarity=0.148 Sum_probs=44.1
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCC-CCCCCCC-Ccccc--ccccCCc--ccCCCCCccCCCCEEEEeeCCCCccHHHHHH
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSR-WSPYGFP-LKEEL--RPRLNHK--AVGDPRCKLKMGDVVELTPAIPDKSLTEYRE 461 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~-~~~~g~~-~~~~v--~akvN~~--~v~~l~~~L~~GD~VeIi~~~~~~~~~~~~~ 461 (488)
..+..|+|.|++|.|.+.+-.+.. +..-+.. ...|- -++|||+ ++++=.+++++|-.|+-- ++....+|+
T Consensus 11 ~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~g~~~~~~aC~t~v~~Gm~v~t~----~~~~~~~rk 86 (234)
T PRK07569 11 QLVSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEIEGSNKLLPACVTPVAEGMVVQTN----TPRLQEYRR 86 (234)
T ss_pred EEEEeCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEECCCCccccCcCCCCCCCCEEEEC----CHHHHHHHH
Confidence 468999999999999987644422 1100000 01121 2578885 343467889999877644 224555555
Q ss_pred HHHHHh
Q 011341 462 EIQRMY 467 (488)
Q Consensus 462 ~i~~~~ 467 (488)
.+.+++
T Consensus 87 ~~l~~l 92 (234)
T PRK07569 87 MIVELL 92 (234)
T ss_pred HHHHHH
Confidence 554443
No 82
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=51.89 E-value=16 Score=40.47 Aligned_cols=32 Identities=38% Similarity=0.524 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHH----HcCCCHH-HHHHHhhhcccc
Q 011341 8 YLLHCVETAMLLA----AIGANST-VVAAGLLHDTLD 39 (488)
Q Consensus 8 yi~H~l~VA~iLa----~lg~D~~-~i~AALLHDvvE 39 (488)
.+.|.++||.+.. .+|+|++ ...||||||+=-
T Consensus 330 ~l~Hs~~VA~lA~~LA~~lgld~~~a~~AGLLHDIGK 366 (514)
T TIGR03319 330 VLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIGK 366 (514)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCc
Confidence 5789999998643 6788874 556999999844
No 83
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=50.42 E-value=17 Score=38.09 Aligned_cols=31 Identities=32% Similarity=0.281 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHH----HcCCCHH-HHHHHhhhccc
Q 011341 8 YLLHCVETAMLLA----AIGANST-VVAAGLLHDTL 38 (488)
Q Consensus 8 yi~H~l~VA~iLa----~lg~D~~-~i~AALLHDvv 38 (488)
-++|.++|+.+.. .++.+++ +-+|||+||+=
T Consensus 63 R~~Hsl~V~~iar~~~~~l~~~~~l~~aaaL~HDiG 98 (336)
T PRK01286 63 RLTHTLEVAQIARTIARALRLNEDLTEAIALGHDLG 98 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC
Confidence 4799999999655 4566654 44688999974
No 84
>PRK12704 phosphodiesterase; Provisional
Probab=49.20 E-value=20 Score=39.71 Aligned_cols=34 Identities=38% Similarity=0.486 Sum_probs=25.2
Q ss_pred cchhHHHHHHHHHH---H-HcCCCH-HHHHHHhhhcccc
Q 011341 6 DPYLLHCVETAMLL---A-AIGANS-TVVAAGLLHDTLD 39 (488)
Q Consensus 6 ~Pyi~H~l~VA~iL---a-~lg~D~-~~i~AALLHDvvE 39 (488)
...+.|+++||.+. + .+|+|. ....||||||+=.
T Consensus 334 qn~l~Hs~~Va~lA~~lA~~lgld~~~a~~AgLLHDIGK 372 (520)
T PRK12704 334 QNVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIGK 372 (520)
T ss_pred CcHhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHccCc
Confidence 34678999999854 2 668865 4667999999744
No 85
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=48.99 E-value=17 Score=37.85 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=25.8
Q ss_pred cchhHHHHHHHHHHH----HcCCCH-HHHHHHhhhccccc
Q 011341 6 DPYLLHCVETAMLLA----AIGANS-TVVAAGLLHDTLDD 40 (488)
Q Consensus 6 ~Pyi~H~l~VA~iLa----~lg~D~-~~i~AALLHDvvED 40 (488)
++...|.+.||.+.. .+|.|. +.-.||||||+=..
T Consensus 195 ~~~~~HSl~VA~~A~~LA~~~g~d~~~a~~AGLLHDIGK~ 234 (342)
T PRK07152 195 EYRYKHCLRVAQLAAELAKKNNLDPKKAYYAGLYHDITKE 234 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhhcc
Confidence 345789999997553 456654 67889999998653
No 86
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=48.92 E-value=12 Score=32.21 Aligned_cols=24 Identities=21% Similarity=0.472 Sum_probs=21.4
Q ss_pred cccCCcccCCCCCccCCCCEEEEee
Q 011341 425 PRLNHKAVGDPRCKLKMGDVVELTP 449 (488)
Q Consensus 425 akvN~~~v~~l~~~L~~GD~VeIi~ 449 (488)
+++||+.+ -.++.++.||+++|-.
T Consensus 36 V~vNG~~a-KpS~~VK~GD~l~i~~ 59 (100)
T COG1188 36 VKVNGQRA-KPSKEVKVGDILTIRF 59 (100)
T ss_pred EEECCEEc-ccccccCCCCEEEEEe
Confidence 58999998 4999999999999874
No 87
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=47.61 E-value=9.9 Score=30.21 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=14.1
Q ss_pred ccccCCcccCCCCCccCCCCEEEE
Q 011341 424 RPRLNHKAVGDPRCKLKMGDVVEL 447 (488)
Q Consensus 424 ~akvN~~~v~~l~~~L~~GD~VeI 447 (488)
.++|||+....-..+|+.||+|++
T Consensus 34 ~V~VNGe~e~rrg~Kl~~GD~V~~ 57 (65)
T PF13275_consen 34 EVKVNGEVETRRGKKLRPGDVVEI 57 (65)
T ss_dssp HHEETTB----SS----SSEEEEE
T ss_pred ceEECCEEccccCCcCCCCCEEEE
Confidence 478999976446799999999998
No 88
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=47.25 E-value=16 Score=38.63 Aligned_cols=55 Identities=5% Similarity=-0.144 Sum_probs=38.9
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccc--------------cccccCCccc-CCCCCccCCCCEEEEe
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEE--------------LRPRLNHKAV-GDPRCKLKMGDVVELT 448 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~--------------v~akvN~~~v-~~l~~~L~~GD~VeIi 448 (488)
+.-.+++|+|+-+.|-.||+|+. .+|-.+ ..||=.|++- -.-+|.+++||++.+-
T Consensus 296 RaWti~~G~~Ap~AAG~IHsDfe------kgFIrAEV~~yddl~~~gs~~~~k~~Gk~r~eGK~YivqDGDIi~f~ 365 (368)
T TIGR00092 296 RAWTRKGGWAAPQAAGIIHTDFE------TGFIAAEVISWDDFIYKKSSQGAKKGGLMRLEGKYYVVDDGDVLFFA 365 (368)
T ss_pred EEeecCCCCchhHhcCCcccccc------cCceEEEEecHHHHHHcCCHHHHHhcCchhhcCCeEEeeCCeEEEEe
Confidence 56789999999999999999974 223332 1244455421 1367999999999874
No 89
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=47.17 E-value=84 Score=26.60 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHhhhhhcccC-----hhhHHHHHHhhhhhccCcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcC
Q 011341 120 LCKRQRFAKETLEIFVPLANRLG-----ISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKN 194 (488)
Q Consensus 120 ~~k~~~~A~Etl~iyaPLA~rLG-----i~~ik~ELedl~f~~l~p~~y~~i~~~l~~~~~~~~i~~~~~~l~~~L~~~g 194 (488)
++..+.+|...=.=|-++|.+|| +.. .+++.+..+|=.-..|+.+.+.|......+--..-+..|-+.|..++
T Consensus 2 ~~~~q~~~~nvGr~WK~laR~Lg~~cral~d--~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg~~Atv~~Lv~AL~~c~ 79 (90)
T cd08780 2 PADQQHFAKSVGKKWKPVGRSLQKNCRALRD--PAIDNLAYEYDREGLYEQAYQLLRRFIQSEGKKATLQRLVQALEENG 79 (90)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHcccccccch--hHHHHHHhhcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHcc
Confidence 45566677666666888999999 554 46777777765555666666666554321111233334445566655
Q ss_pred Cc
Q 011341 195 IS 196 (488)
Q Consensus 195 i~ 196 (488)
.+
T Consensus 80 l~ 81 (90)
T cd08780 80 LT 81 (90)
T ss_pred ch
Confidence 54
No 90
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=46.44 E-value=14 Score=37.42 Aligned_cols=54 Identities=24% Similarity=0.220 Sum_probs=41.8
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCcccc----ccccCCcccCCCCCccCCCCEEEEe
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEEL----RPRLNHKAVGDPRCKLKMGDVVELT 448 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v----~akvN~~~v~~l~~~L~~GD~VeIi 448 (488)
|.+-|.+|+|+.|+--+||..+. ..|++++ .||---+.| .+.+.+.+-|+|.|+
T Consensus 305 d~~vlr~g~tve~~C~~iHr~l~------~qfkyAlVWGtSakhsPQrv-gl~h~~~dEdvvqi~ 362 (364)
T KOG1486|consen 305 DPLVLRKGSTVEDVCHRIHRTLA------AQFKYALVWGTSAKHSPQRV-GLGHTLEDEDVVQIV 362 (364)
T ss_pred CceEEeCCCcHHHHHHHHHHHHH------HhhceeeEeccccccCccee-ccccccccccceeee
Confidence 57788999999999999987652 2344443 566666667 599999999999987
No 91
>PRK11507 ribosome-associated protein; Provisional
Probab=45.79 E-value=16 Score=29.56 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=19.7
Q ss_pred ccccCCcccCCCCCccCCCCEEEEe
Q 011341 424 RPRLNHKAVGDPRCKLKMGDVVELT 448 (488)
Q Consensus 424 ~akvN~~~v~~l~~~L~~GD~VeIi 448 (488)
.++|||+.-..-..+|+.||+|++-
T Consensus 38 ~V~VNGeve~rRgkKl~~GD~V~~~ 62 (70)
T PRK11507 38 QVKVDGAVETRKRCKIVAGQTVSFA 62 (70)
T ss_pred ceEECCEEecccCCCCCCCCEEEEC
Confidence 3689999643356899999999984
No 92
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=44.74 E-value=1.1e+02 Score=32.08 Aligned_cols=114 Identities=17% Similarity=0.099 Sum_probs=72.6
Q ss_pred hcccChhhHHHHHHhhhhhccCcchHHHHHHHHHhh--h-------hHHHHHHHHHHHHHHHHhcCCc------eeeeec
Q 011341 138 ANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVEC--F-------DEAMVTSAIEKLEQALKDKNIS------FLVLCG 202 (488)
Q Consensus 138 A~rLGi~~ik~ELedl~f~~l~p~~y~~i~~~l~~~--~-------~~~~i~~~~~~l~~~L~~~gi~------~~~v~~ 202 (488)
.-|+|..--..|+-+.-.+...|.....+....... . .-..+..-++.+.+.|+..|+. +..+--
T Consensus 218 GlRlGy~ia~~~~i~~l~~vr~p~~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~~~~~v~pS~aNFvlv 297 (356)
T COG0079 218 GLRVGYAIANPELIAALNKVRPPFNVSSPALAAAIAALRDADYLEESVERIREERERLYAALKALGLFGVFPSQANFVLV 297 (356)
T ss_pred hhceeeccCCHHHHHHHHHhcCCCCCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcEEEE
Confidence 457777444456777777777777666555544321 1 1234455566777788876532 223444
Q ss_pred cccC--hHHHHHHHhhcCCCCCCCCc--c--eEEEEEeCChHHHHHHHHHHHhhc
Q 011341 203 RHKS--LYSIHCKMLKKKLTMDEIHD--I--YGLRLIVENEEDCYQALRVVHQLW 251 (488)
Q Consensus 203 R~K~--~~Si~~K~~rk~~~~~~i~D--l--~giRIiv~~~~dcy~vl~~i~~~~ 251 (488)
|... ...+++++.++|.-..+..+ + -.+||.+.+.+++.+++..|....
T Consensus 298 ~~~~~~~~~l~~~L~~~giivR~~~~~~~~~~~lRitvgt~een~~ll~AL~~~~ 352 (356)
T COG0079 298 RVPDAEAAALAEALLKKGILVRDCSSVGLLPGYLRITVGTPEENDRLLAALREVL 352 (356)
T ss_pred ECCCccHHHHHHHHHHCCEEEEeCCCCCCCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 5544 44699999998864333322 2 259999999999999999987653
No 93
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=44.09 E-value=59 Score=37.34 Aligned_cols=75 Identities=20% Similarity=0.263 Sum_probs=50.8
Q ss_pred EEeCCcceEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccc---------cccCC--cccCCCCCccCCCCEEEEee
Q 011341 381 MIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELR---------PRLNH--KAVGDPRCKLKMGDVVELTP 449 (488)
Q Consensus 381 ~~~~~~~~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~---------akvN~--~~v~~l~~~L~~GD~VeIi~ 449 (488)
..|| ..+++|+|.|++..|-..|.++.. +.+|..++ +.|+| |++++=.++..+|-+|..
T Consensus 5 ~IDG---~ei~v~~g~tvLqAa~~aGi~IP~-----fCyh~~ls~~GaCRmClVEveg~~k~~~SC~tpv~dGM~I~T-- 74 (693)
T COG1034 5 TIDG---KEIEVPEGETVLQAAREAGIDIPT-----FCYHPRLSIAGACRMCLVEVEGAPKLVASCATPVTDGMVIST-- 74 (693)
T ss_pred EECC---EEEecCCCcHHHHHHHHcCCCCCc-----ccccCCCCcccceeEEEEEecCCCccccccccccCCCeEEec--
Confidence 3455 588999999999999987666531 22233321 45777 888777889999998443
Q ss_pred CCCCccHHHHHHHHHHHh
Q 011341 450 AIPDKSLTEYREEIQRMY 467 (488)
Q Consensus 450 ~~~~~~~~~~~~~i~~~~ 467 (488)
.++...++|+.+-+|+
T Consensus 75 --~s~~vk~~R~~vmE~L 90 (693)
T COG1034 75 --NSEEVKKAREGVMEFL 90 (693)
T ss_pred --CCHHHHHHHHHHHHHH
Confidence 2334556666666666
No 94
>TIGR01399 hrcV type III secretion protein, HrcV family. Members of this family are closely homologous to the flagellar biosynthesis protein FlhA (TIGR01398) and should all participate in type III secretion systems. Examples include InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc. Type III secretion systems resemble flagellar biogenesis systems, and may share the property of translocating special classes of peptides through the membrane.
Probab=43.80 E-value=2.6e+02 Score=32.15 Aligned_cols=128 Identities=16% Similarity=0.162 Sum_probs=85.4
Q ss_pred HHHHHHcCC---CHHHHHHHhhhccccccC---CCHHHHH---hHhhHHHHHHHHHhccccccchHHhhcccccchHHHH
Q 011341 16 AMLLAAIGA---NSTVVAAGLLHDTLDDAF---LSYDYIF---RTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEAD 86 (488)
Q Consensus 16 A~iLa~lg~---D~~~i~AALLHDvvEDt~---~t~eel~---~~FG~~Va~lV~~vTk~~~~~~~~r~~~~~~~~~~~e 86 (488)
...+...|+ |+.+++|.-|..++.... ++.+|++ +..+++=-.+|+.+.+.-.+... .+
T Consensus 455 ~~~a~~~Gytvvd~~svi~thl~e~i~~~a~ellgrqe~~~Lld~l~~~~p~Lv~Elp~~~~l~~i------------~~ 522 (677)
T TIGR01399 455 AEKLQGAGLGYFSDSQVITHRLKATLLRNAQEFIGIQETRYLLDQMEREYPELVKEVQRVLPLQRI------------AE 522 (677)
T ss_pred HHHHHHcCCeEEcHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH------------HH
Confidence 334445553 889999998888886432 4555443 45666666777776332222211 23
Q ss_pred HHHHHHh---hcCCchhhHHHHhhHHhhhccccCCChHHHHHHHHHHHHHhhhhhcccChhhHHHHHHhhhh
Q 011341 87 RLHTMFL---AMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCF 155 (488)
Q Consensus 87 ~lRkmll---a~~D~rvvlIKLADRLhNmrtl~~~~~~k~~~~A~Etl~iyaPLA~rLGi~~ik~ELedl~f 155 (488)
-+|.+|- ++.|.+.++=-|||.-..-+....+.+.-|+++++....-|++-.+.|....+.-++|+.-.
T Consensus 523 VLq~LL~E~VsIRdl~~IlEtLad~~~~~~d~~~LtE~VR~~L~r~I~~~~~~~~~~l~vi~l~p~~E~~l~ 594 (677)
T TIGR01399 523 VLQRLVSEQVSIRNLRLILETLIEWAQREKDVVMLTEYVRIALKRYICHRYANGGRQLSAVLIDPEIEELIR 594 (677)
T ss_pred HHHHHHhCCCccccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEEeCHHHHHHHH
Confidence 4555543 23488999989999877777666666677888998888878776667888888888888654
No 95
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=41.35 E-value=1e+02 Score=25.45 Aligned_cols=72 Identities=19% Similarity=0.143 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhhhhhcccChhhHHHHHHhhhhhccCcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCc
Q 011341 121 CKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNIS 196 (488)
Q Consensus 121 ~k~~~~A~Etl~iyaPLA~rLGi~~ik~ELedl~f~~l~p~~y~~i~~~l~~~~~~~~i~~~~~~l~~~L~~~gi~ 196 (488)
+.-..+|.-.-.=+-+||.+||+.. .+++.+-- -+|+.+....+.|.......--..-...|.+.|.+.|..
T Consensus 8 ~~l~~ia~~iG~~Wk~Lar~LGls~--~dI~~i~~--~~~~~~eq~~~mL~~W~~r~g~~AT~~~L~~aL~~~~~~ 79 (86)
T cd08318 8 EQITVFANKLGEDWKTLAPHLEMKD--KEIRAIES--DSEDIKMQAKQLLVAWQDREGSQATPETLITALNAAGLN 79 (86)
T ss_pred HHHHHHHHHHhhhHHHHHHHcCCCH--HHHHHHHh--cCCCHHHHHHHHHHHHHHhcCccccHHHHHHHHHHcCcH
Confidence 3344466555566788999999975 46655443 356777777777766532211223355666677766653
No 96
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=41.34 E-value=21 Score=26.45 Aligned_cols=26 Identities=38% Similarity=0.529 Sum_probs=21.1
Q ss_pred ccccCCcccCCCCCccCCCCEEEEee
Q 011341 424 RPRLNHKAVGDPRCKLKMGDVVELTP 449 (488)
Q Consensus 424 ~akvN~~~v~~l~~~L~~GD~VeIi~ 449 (488)
++++||+.+...++.++.||+|.+-.
T Consensus 27 ~V~vn~~~~~~~~~~v~~~d~i~i~~ 52 (70)
T cd00165 27 HVLVNGKVVTKPSYKVKPGDVIEVDG 52 (70)
T ss_pred CEEECCEEccCCccCcCCCCEEEEcC
Confidence 46899998834899999999988764
No 97
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=40.52 E-value=45 Score=38.51 Aligned_cols=86 Identities=17% Similarity=0.256 Sum_probs=53.4
Q ss_pred EEEEEeCCcceEEecCCCCcHHHHHHHhcCCCCC-C-C-CCCCCCccccc--cccCCcccCCCCCccCCCCEEEEeeCCC
Q 011341 378 FVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSR-W-S-PYGFPLKEELR--PRLNHKAVGDPRCKLKMGDVVELTPAIP 452 (488)
Q Consensus 378 ~v~~~~~~~~~~~~lp~GsT~~DfAy~i~~~~~~-~-~-~~g~~~~~~v~--akvN~~~v~~l~~~L~~GD~VeIi~~~~ 452 (488)
..++.|| .-++.|+|+|++++|-+-+.++.- | . ..| ++.+|-- +-+||+++++=++++.+|.+|.-.+
T Consensus 6 i~vtidg---~~~~v~~G~tiL~a~~~~gI~iP~iCy~~~l~-pi~sCd~ClVEidG~l~rsCsT~v~dGm~v~t~s--- 78 (978)
T COG3383 6 ITVTIDG---RSIEVEEGTTILRAANRNGIEIPHICYHESLG-PIGSCDTCLVEIDGKLVRSCSTPVEDGMVVRTNS--- 78 (978)
T ss_pred EEEEECC---eEEecCCChHHHHHHHhcCCcccceeccCCCC-cccccceEEEEecCceeccccccccCCcEEeccc---
Confidence 3456677 578999999999999876544321 1 0 011 2233321 4589999987899999999875432
Q ss_pred CccHHHHHHHHHHHhhhc
Q 011341 453 DKSLTEYREEIQRMYERG 470 (488)
Q Consensus 453 ~~~~~~~~~~i~~~~~~~ 470 (488)
+.--.-.+.++.++.++-
T Consensus 79 ~rvk~~r~~~md~~l~nH 96 (978)
T COG3383 79 ERVKEARREAMDRILSNH 96 (978)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 212223456666666443
No 98
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=39.88 E-value=1.9e+02 Score=29.58 Aligned_cols=72 Identities=13% Similarity=0.090 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHhcCCc------eeeeeccccChHHHHHHHhhcCCCCCCCCcceEEEEEeC---ChHHHHHHHHHHH
Q 011341 178 MVTSAIEKLEQALKDKNIS------FLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVE---NEEDCYQALRVVH 248 (488)
Q Consensus 178 ~i~~~~~~l~~~L~~~gi~------~~~v~~R~K~~~Si~~K~~rk~~~~~~i~Dl~giRIiv~---~~~dcy~vl~~i~ 248 (488)
.+.+..+.+++.|++.|.. ...+..+.+....+.++|..+|.-......-..+||.+. +.+|+.++++.|.
T Consensus 292 ~~~~~~~~l~~~L~~~g~~~~~~~~~~~v~~~~~~~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edid~l~~~L~ 371 (373)
T TIGR03812 292 ECMENTRYLVEELKKIGFEPVIEPVLNIVAFEVDDPEEVRKKLRDRGWYVSVTRCPKALRIVVMPHVTREHIEEFLEDLK 371 (373)
T ss_pred HHHHHHHHHHHHHHhCCCeEEcCCCceEEEEEeCCHHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHh
Confidence 3455566677777765542 112455777777899999888764433222246999996 8899999998885
Q ss_pred h
Q 011341 249 Q 249 (488)
Q Consensus 249 ~ 249 (488)
+
T Consensus 372 ~ 372 (373)
T TIGR03812 372 E 372 (373)
T ss_pred h
Confidence 4
No 99
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=38.77 E-value=32 Score=37.22 Aligned_cols=31 Identities=35% Similarity=0.470 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHH----HcCCCHH-HHHHHhhhcccc
Q 011341 9 LLHCVETAMLLA----AIGANST-VVAAGLLHDTLD 39 (488)
Q Consensus 9 i~H~l~VA~iLa----~lg~D~~-~i~AALLHDvvE 39 (488)
++|.++||.+.. .+|.+.+ +.+|||+||+=-
T Consensus 72 ltHslev~~~~r~~~~~~~~~~~~~~~~~l~hd~Gh 107 (428)
T PRK03007 72 LTHSLEVAQIGRGIAAGLGCDPDLVDLAGLAHDIGH 107 (428)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCC
Confidence 799999999765 4566544 667889999743
No 100
>COG1710 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.69 E-value=37 Score=30.23 Aligned_cols=55 Identities=22% Similarity=0.274 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHhcCCceeeee----ccccChHH----HHHHHhhcCCCCCCCCcceEEEE
Q 011341 178 MVTSAIEKLEQALKDKNISFLVLC----GRHKSLYS----IHCKMLKKKLTMDEIHDIYGLRL 232 (488)
Q Consensus 178 ~i~~~~~~l~~~L~~~gi~~~~v~----~R~K~~~S----i~~K~~rk~~~~~~i~Dl~giRI 232 (488)
+...+...+-..|++-||..-.|. ||++..+. +.++|.++|.+..+|.-..|+=|
T Consensus 61 ~y~k~skkvlkaleq~gI~vIPvk~KgrGrprkyd~~t~~~i~emlr~gk~preIsk~lGIpi 123 (139)
T COG1710 61 LYPKVSKKVLKALEQMGIKVIPVKLKGRGRPRKYDRNTLLRIREMLRNGKTPREISKDLGIPI 123 (139)
T ss_pred hhhHHHHHHHHHHHhCCceEeeeeecCCCCCcccchhHHHHHHHHHHcCCCHHHHHHhhCCch
Confidence 334444555557777788765555 78888877 88999999999888888888744
No 101
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=37.49 E-value=23 Score=38.29 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHcC--------------C-CHH-HHHHHhhhcccc
Q 011341 9 LLHCVETAMLLAAIG--------------A-NST-VVAAGLLHDTLD 39 (488)
Q Consensus 9 i~H~l~VA~iLa~lg--------------~-D~~-~i~AALLHDvvE 39 (488)
++|.++||.+...++ . +.+ +-+|||+||+=-
T Consensus 60 ltHslev~~i~r~~~~~~~~~~~~~~~~~~~~~~l~~a~~L~HDiGh 106 (432)
T PRK05318 60 LTHSLEVAQIGTGIVAQLKKEKQPELKPLLPSDSLIESLCLAHDIGH 106 (432)
T ss_pred hHHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHhcCCC
Confidence 699999998765331 1 344 347889999743
No 102
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=36.99 E-value=1.2e+02 Score=23.55 Aligned_cols=48 Identities=23% Similarity=0.232 Sum_probs=38.1
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEee
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP 449 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~ 449 (488)
..+....|+|.-+|.-.+.++. .| .-+||=.. .-+..|+.||.|-.|.
T Consensus 8 k~~~~~~~~tl~~lr~~~k~~~------------DI-~I~NGF~~-~~d~~L~e~D~v~~Ik 55 (57)
T PF14453_consen 8 KEIETEENTTLFELRKESKPDA------------DI-VILNGFPT-KEDIELKEGDEVFLIK 55 (57)
T ss_pred EEEEcCCCcCHHHHHHhhCCCC------------CE-EEEcCccc-CCccccCCCCEEEEEe
Confidence 5788999999999998876552 12 35899887 5999999999997763
No 103
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=36.90 E-value=13 Score=28.53 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=18.1
Q ss_pred cccccCCcccCC-CCCccCCCCEEEE
Q 011341 423 LRPRLNHKAVGD-PRCKLKMGDVVEL 447 (488)
Q Consensus 423 v~akvN~~~v~~-l~~~L~~GD~VeI 447 (488)
-|..|||+.+++ -.++|++||+++|
T Consensus 42 ngt~vng~~l~~~~~~~L~~gd~i~~ 67 (68)
T PF00498_consen 42 NGTFVNGQRLGPGEPVPLKDGDIIRF 67 (68)
T ss_dssp S-EEETTEEESSTSEEEE-TTEEEEE
T ss_pred CcEEECCEEcCCCCEEECCCCCEEEc
Confidence 356899998842 2699999999986
No 104
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=36.75 E-value=1.1e+02 Score=35.85 Aligned_cols=81 Identities=20% Similarity=0.131 Sum_probs=49.1
Q ss_pred EEEeCCcceEEecCCCCcHHHHHHHhcCCCCC-CCCCC-CCCcccc--ccccCCcccCCCCCccCCCCEEEEeeCCCCcc
Q 011341 380 IMIENDKMSVQEFPTSSTVMDLLERAGRGSSR-WSPYG-FPLKEEL--RPRLNHKAVGDPRCKLKMGDVVELTPAIPDKS 455 (488)
Q Consensus 380 ~~~~~~~~~~~~lp~GsT~~DfAy~i~~~~~~-~~~~g-~~~~~~v--~akvN~~~v~~l~~~L~~GD~VeIi~~~~~~~ 455 (488)
++.+| ..++.|+|.|+++.|.+.|-.+.. |..-+ .+...|- -+.|||+.++.=.++.++|.+|+--+ +.
T Consensus 4 i~IdG---~~v~~~~G~til~aa~~~gi~iP~lC~~~~~~~~G~Cr~C~VeV~G~~~~AC~t~v~dGM~V~T~s----~~ 76 (819)
T PRK08493 4 ITING---KECEAQEGEYILNVARRNGIFIPAICYLSGCSPTLACRLCMVEADGKRVYSCNTKAKEGMNILTNT----PN 76 (819)
T ss_pred EEECC---EEEEeCCCCHHHHHHHHcCCccccccccCCCCCCccccceEEEECCEEeccccCCCCCCCEEEecC----HH
Confidence 44566 578999999999999987644421 10000 0001221 25789987755778899999766532 22
Q ss_pred HHHHHHHHHHHh
Q 011341 456 LTEYREEIQRMY 467 (488)
Q Consensus 456 ~~~~~~~i~~~~ 467 (488)
....|+.+.+++
T Consensus 77 v~~~Rk~vle~l 88 (819)
T PRK08493 77 LMDERNAIMQTY 88 (819)
T ss_pred HHHHHHHHHHHH
Confidence 345566666665
No 105
>PRK14136 recX recombination regulator RecX; Provisional
Probab=36.38 E-value=25 Score=36.25 Aligned_cols=99 Identities=15% Similarity=0.187 Sum_probs=53.2
Q ss_pred hhhhhccCcchH--HHHHHHHHhhh-hHHHHHHHHHHHHHH--HHhcCCceeeeecc--ccChHHHHHHHhhcCCCCCCC
Q 011341 152 NLCFKHLNPDQH--TELSSKLVECF-DEAMVTSAIEKLEQA--LKDKNISFLVLCGR--HKSLYSIHCKMLKKKLTMDEI 224 (488)
Q Consensus 152 dl~f~~l~p~~y--~~i~~~l~~~~-~~~~i~~~~~~l~~~--L~~~gi~~~~v~~R--~K~~~Si~~K~~rk~~~~~~i 224 (488)
+.|+.||-...| .+|.++|.+.. .++.|+.+++.|++. |++.-.--..|..| .+.+.-|..+|.+||++-+-|
T Consensus 166 ~kAL~lLSrReRSe~ELr~KL~kkG~~ee~IE~VIerLke~gYLDDeRFAesyVr~R~~kkGp~rIrqELrQKGId~eLI 245 (309)
T PRK14136 166 GRALGYLSRREYSRAELARKLAPYADESDSVEPLLDALEREGWLSDARFAESLVHRRASRVGSARIVSELKRHAVGDALV 245 (309)
T ss_pred HHHHHHhhcccccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhhchhHHHHHHHHHHcCCCHHHH
Confidence 345555554444 45566665542 344555555554431 11110000012222 256778999999999985555
Q ss_pred CcceEEEEEeCChHHHHHHHHHHHhhccCC
Q 011341 225 HDIYGLRLIVENEEDCYQALRVVHQLWAEV 254 (488)
Q Consensus 225 ~Dl~giRIiv~~~~dcy~vl~~i~~~~~~~ 254 (488)
.+.+. .+ .+++...+..++.+.|...
T Consensus 246 EqALe--ei--eEDE~E~A~~L~eKK~~~~ 271 (309)
T PRK14136 246 ESVGA--QL--RETEFERAQAVWRKKFGAL 271 (309)
T ss_pred HHHHH--hc--cHhHHHHHHHHHHHHhccc
Confidence 55444 11 4466777778888777643
No 106
>PRK14137 recX recombination regulator RecX; Provisional
Probab=35.92 E-value=36 Score=32.77 Aligned_cols=103 Identities=18% Similarity=0.282 Sum_probs=58.0
Q ss_pred HHHHHhhhhhccCcchH--HHHHHHHHhh-hhHHHHHHHHHHHHHH--HHhcCC-ceeeeeccccChHHHHHHHhhcCCC
Q 011341 147 KVQLENLCFKHLNPDQH--TELSSKLVEC-FDEAMVTSAIEKLEQA--LKDKNI-SFLVLCGRHKSLYSIHCKMLKKKLT 220 (488)
Q Consensus 147 k~ELedl~f~~l~p~~y--~~i~~~l~~~-~~~~~i~~~~~~l~~~--L~~~gi-~~~~v~~R~K~~~Si~~K~~rk~~~ 220 (488)
...+.+.|+.+|.-..| .++.++|... ..++.|+.+++.|.+. |++.-. ... ...+-+.+.-|.++|.+||.+
T Consensus 39 ~~~~~~~Al~~Ls~R~rS~~ELr~KL~~kg~~~e~Ie~vI~rL~e~gyLDD~rfAe~~-~~~k~~Gp~rI~~eL~qKGI~ 117 (195)
T PRK14137 39 REALLAYAFRALAARAMTAAELRAKLERRSEDEALVTEVLERVQELGYQDDAQVARAE-NSRRGVGALRVRQTLRRRGVE 117 (195)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHH-HHhcCchHHHHHHHHHHcCCC
Confidence 34455556666555444 4566666554 2455666666655441 111100 001 122446778899999999998
Q ss_pred CCCCCcceEEEEEeCChHHHHHHHHHHHhhccC
Q 011341 221 MDEIHDIYGLRLIVENEEDCYQALRVVHQLWAE 253 (488)
Q Consensus 221 ~~~i~Dl~giRIiv~~~~dcy~vl~~i~~~~~~ 253 (488)
-+-|.+.+.- +...++...+..++.+.|..
T Consensus 118 ~~lI~~al~~---~d~ede~e~a~~l~~KK~~~ 147 (195)
T PRK14137 118 ETLIEETLAA---RDPQEEQQEARNLLERRWSS 147 (195)
T ss_pred HHHHHHHHHh---cCchhHHHHHHHHHHHhccc
Confidence 6555554431 13345677888888888764
No 107
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=34.79 E-value=1.3e+02 Score=29.51 Aligned_cols=85 Identities=20% Similarity=0.355 Sum_probs=54.2
Q ss_pred HHHHHHHcCC---CHHHHHHHhhhccccccCCCHHHHHhHhhHHHHHHHHHhccccccchHHhhcccccchHHHHHHHHH
Q 011341 15 TAMLLAAIGA---NSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTM 91 (488)
Q Consensus 15 VA~iLa~lg~---D~~~i~AALLHDvvEDt~~t~eel~~~FG~~Va~lV~~vTk~~~~~~~~r~~~~~~~~~~~e~lRkm 91 (488)
|+..+..+|. |.|.++ |++++-..-....|.+.||.+| +-+...++ .+-+.++
T Consensus 17 Vs~~f~~~G~~vIDaD~va----R~vv~PG~p~~~~ive~FG~ei------Ll~~G~in--------------R~~LG~~ 72 (225)
T KOG3220|consen 17 VSQVFKALGIPVIDADVVA----REVVEPGTPAYRRIVEAFGTEI------LLEDGEIN--------------RKVLGKR 72 (225)
T ss_pred HHHHHHHcCCcEecHHHHH----HHHhcCCChHHHHHHHHhCcee------eccCCccc--------------HHHHhHH
Confidence 4556666674 888876 9999988888999999999998 11222221 2345554
Q ss_pred HhhcCCchhhHHHHhhHHhhhccccCCChHHHHHHHHHHHHHhh
Q 011341 92 FLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFV 135 (488)
Q Consensus 92 lla~~D~rvvlIKLADRLhNmrtl~~~~~~k~~~~A~Etl~iya 135 (488)
.+.-.+-|-.|-++ +-|.-+..+.+|++..|+
T Consensus 73 vF~~~~~r~~Ln~I------------thP~Ir~em~ke~~~~~l 104 (225)
T KOG3220|consen 73 VFSDPKKRQALNKI------------THPAIRKEMFKEILKLLL 104 (225)
T ss_pred HhCCHHHHHHHHhc------------ccHHHHHHHHHHHHHHHh
Confidence 43332333333221 246778888889888764
No 108
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=34.18 E-value=40 Score=34.96 Aligned_cols=31 Identities=29% Similarity=0.285 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHc-----CCCHH-HHHHHhhhccc
Q 011341 8 YLLHCVETAMLLAAI-----GANST-VVAAGLLHDTL 38 (488)
Q Consensus 8 yi~H~l~VA~iLa~l-----g~D~~-~i~AALLHDvv 38 (488)
.+.|-++|+.+...+ .+|.+ .+++|||||+=
T Consensus 160 LleHtl~v~~~~~~l~~~y~~~n~dll~agalLHDiG 196 (314)
T PRK13480 160 LAYHVVSMLRLAKSICDLYPSLNKDLLYAGIILHDLG 196 (314)
T ss_pred HHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhh
Confidence 368999999987654 46777 55666999974
No 109
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=34.06 E-value=26 Score=28.55 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=19.8
Q ss_pred ccccCCcccCCCCCccCCCCEEEEe
Q 011341 424 RPRLNHKAVGDPRCKLKMGDVVELT 448 (488)
Q Consensus 424 ~akvN~~~v~~l~~~L~~GD~VeIi 448 (488)
.++|||+.=..-..+|+.||+|+|=
T Consensus 38 ~V~vNGe~EtRRgkKlr~gd~V~i~ 62 (73)
T COG2501 38 EVKVNGEVETRRGKKLRDGDVVEIP 62 (73)
T ss_pred eEEECCeeeeccCCEeecCCEEEEC
Confidence 4799998643356899999999984
No 110
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=33.91 E-value=48 Score=32.21 Aligned_cols=61 Identities=18% Similarity=0.079 Sum_probs=35.0
Q ss_pred EEecCCCCcHHHHHHHhcC----CCCCCCCCCCCCccccccccCCcccCCCCCccCC-CC---EEEEee
Q 011341 389 VQEFPTSSTVMDLLERAGR----GSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKM-GD---VVELTP 449 (488)
Q Consensus 389 ~~~lp~GsT~~DfAy~i~~----~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~-GD---~VeIi~ 449 (488)
.++.+.|.|++|++..|+. .++.-..-+.+.=..-+++|||+.+-+-.+++++ |. +||-++
T Consensus 18 ~v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~vnG~~~laC~t~v~~~g~~~~~iepl~ 86 (220)
T TIGR00384 18 EVPADEGMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNVNGKPVLACKTKVEDLGQPVMKIEPLP 86 (220)
T ss_pred EEeCCCCCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEECCEEhhhhhChHHHcCCCcEEEeeCC
Confidence 3466799999999998761 1110000000000012578999976336788888 77 455554
No 111
>PRK12792 flhA flagellar biosynthesis protein FlhA; Reviewed
Probab=33.42 E-value=3.2e+02 Score=31.61 Aligned_cols=120 Identities=13% Similarity=0.160 Sum_probs=81.0
Q ss_pred CCHHHHHHHhhhccccccC---CCHHHHH---hHhhHHHHHHHHHh-ccccccchHHhhcccccchHHHHHHHHHHh---
Q 011341 24 ANSTVVAAGLLHDTLDDAF---LSYDYIF---RTFGAGVADLVEGV-SKLSQLSKLARENNTASKTVEADRLHTMFL--- 93 (488)
Q Consensus 24 ~D~~~i~AALLHDvvEDt~---~t~eel~---~~FG~~Va~lV~~v-Tk~~~~~~~~r~~~~~~~~~~~e~lRkmll--- 93 (488)
.|+.++++.=|..++.... ++.+|++ +.+.++=-.+|+.+ -+.-.+... .+-+|.+|-
T Consensus 480 vd~~svi~tHl~evi~~~a~ellgrqev~~Lld~l~~~~p~Lveelvp~~~~l~~l------------~~VLq~LL~E~V 547 (694)
T PRK12792 480 VDNASVLLTHLSEVIRNNLPQLLSYKDMRALLDRLDPEYKRLIDDICPSQISYSGL------------QAVLKLLLAERV 547 (694)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhChHHHHHhcccCCCHHHH------------HHHHHHHHHcCC
Confidence 3889999988888886532 4444433 34455555566653 232222211 233454443
Q ss_pred hcCCchhhHHHHhhHHhhhccccCCChHHHHHHHHHHHHHhhhhhcccChhhHHHHHHhhhhh
Q 011341 94 AMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFK 156 (488)
Q Consensus 94 a~~D~rvvlIKLADRLhNmrtl~~~~~~k~~~~A~Etl~iyaPLA~rLGi~~ik~ELedl~f~ 156 (488)
++.|.+.++=-|||.-...+....+.+.-|+++++....-|++ ..+|-.+.+..++|++-..
T Consensus 548 sIRdl~tIlEtL~d~~~~~~d~~~LtE~VR~~L~r~I~~~~~~-~g~l~vi~L~p~~E~~l~~ 609 (694)
T PRK12792 548 SIRNLHLILEAVAEIAPHARRAEQIAEHVRMRIAQQICGDLSD-NGVLKVLRLGNRWDLAFHQ 609 (694)
T ss_pred ccccHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhcc-CCceEEEEeCHHHHHHHHH
Confidence 3348899998999987776666666677799999999998988 8889999999999986543
No 112
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]
Probab=33.17 E-value=44 Score=31.59 Aligned_cols=60 Identities=20% Similarity=0.364 Sum_probs=38.2
Q ss_pred cchhHHHHHHHHH---HH-HcCCCHH-HHHHHhhhccccc-c--------CCCHHHHH-hHhhHHHHHHHHHhcc
Q 011341 6 DPYLLHCVETAML---LA-AIGANST-VVAAGLLHDTLDD-A--------FLSYDYIF-RTFGAGVADLVEGVSK 65 (488)
Q Consensus 6 ~Pyi~H~l~VA~i---La-~lg~D~~-~i~AALLHDvvED-t--------~~t~eel~-~~FG~~Va~lV~~vTk 65 (488)
+..+.||++|+.. |+ ++|-|++ .-.+|||||.=-+ | -.+.+-++ +.-.++|++.|.+-..
T Consensus 46 e~L~kHcla~eavMr~lARe~gEDEEkw~~~GlLHD~DYe~tqgdpEeHgl~g~eiL~~edv~eeil~ai~~H~~ 120 (212)
T COG2316 46 ESLQKHCLAVEAVMRWLAREWGEDEEKWAVTGLLHDFDYELTQGDPEEHGLWGVEILREEDVSEEILDAIMGHAA 120 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhhhccHHhhcCChhhcCccceehHhhcCCCHHHHHHHHHhhh
Confidence 4567899988764 33 7899876 4568899997432 1 12333343 3466777777766443
No 113
>PRK15337 type III secretion system protein InvA; Provisional
Probab=33.01 E-value=4.1e+02 Score=30.68 Aligned_cols=125 Identities=14% Similarity=0.112 Sum_probs=82.4
Q ss_pred HHHHcCC---CHHHHHHHhhhccccccC---CCHHHHH---hHhhHHHHHHHHHhccccccchHHhhcccccchHHHHHH
Q 011341 18 LLAAIGA---NSTVVAAGLLHDTLDDAF---LSYDYIF---RTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRL 88 (488)
Q Consensus 18 iLa~lg~---D~~~i~AALLHDvvEDt~---~t~eel~---~~FG~~Va~lV~~vTk~~~~~~~~r~~~~~~~~~~~e~l 88 (488)
.+...|+ |+.+++|.=|..++.... ++.+|++ +...++--.+|+.+.+.-.+... .+-+
T Consensus 467 ~a~~~Gytvvd~~svi~tHl~evi~~~a~ellg~qev~~Lld~l~~~~p~Lv~elp~~l~l~~i------------~~VL 534 (686)
T PRK15337 467 KLAKLGYVLRSAIDELYHCLSVLLLHNINEFFGIQETKHLLDQLEKKYPDLLKEVYRHATVQRI------------SEVL 534 (686)
T ss_pred HHHHCCCEEECHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHCHHHHHHHhccCCHHHH------------HHHH
Confidence 3344453 888899888888876432 4555443 44566666777776332222211 2344
Q ss_pred HHHHh---hcCCchhhHHHHhhHHhhhccccCCChHHHHHHHHHHHHHhhhhhcccChhhHHHHHHhhhh
Q 011341 89 HTMFL---AMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCF 155 (488)
Q Consensus 89 Rkmll---a~~D~rvvlIKLADRLhNmrtl~~~~~~k~~~~A~Etl~iyaPLA~rLGi~~ik~ELedl~f 155 (488)
|.+|- ++.|.+.++=-|||.-..-+....+.+.-|+++++....=|+ -...|....+..++|+.-.
T Consensus 535 q~LL~E~VsIRdl~~IlE~l~d~~~~~kd~~~LtE~VR~~L~r~I~~~~~-~~g~L~vi~L~~~~E~~l~ 603 (686)
T PRK15337 535 QRLLSERISIRNMKLIMEALALWAPREKDVIMLVEHVRGALARYICHKFA-AGGELRAVVLSAEVEDAIR 603 (686)
T ss_pred HHHHhcCCccccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhc-cCCceEEEEeCHHHHHHHH
Confidence 54442 334888898889998766666666667778999988888788 5667888888888888654
No 114
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=32.30 E-value=3.4e+02 Score=27.62 Aligned_cols=73 Identities=11% Similarity=0.107 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhcCCc-e-----eeeeccccChHHHHHHHhhcCCCCCCCCcceEEEEEe---CChHHHHHHHHHHHh
Q 011341 179 VTSAIEKLEQALKDKNIS-F-----LVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIV---ENEEDCYQALRVVHQ 249 (488)
Q Consensus 179 i~~~~~~l~~~L~~~gi~-~-----~~v~~R~K~~~Si~~K~~rk~~~~~~i~Dl~giRIiv---~~~~dcy~vl~~i~~ 249 (488)
.....+.+.+.|++.|+. . ..+..+.++...+.++|.++|.-......-..+||.+ .+.+|+..+++.|.+
T Consensus 288 ~~~~~~~l~~~L~~~g~~~~~~~~~~~v~~~~~~~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edi~~~~~~l~~ 367 (371)
T PRK13520 288 CMENTRWLAEELKERGFEPVIEPVLNIVAFDDPNPDEVREKLRERGWRVSVTRCPEALRIVCMPHVTREHIENFLEDLKE 367 (371)
T ss_pred HHHHHHHHHHHHHhCCCEEecCCCceEEEEecCCHHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHHH
Confidence 344455666667666654 1 1244455667788899988876443333234699977 478999999999876
Q ss_pred hc
Q 011341 250 LW 251 (488)
Q Consensus 250 ~~ 251 (488)
..
T Consensus 368 ~~ 369 (371)
T PRK13520 368 VK 369 (371)
T ss_pred Hh
Confidence 43
No 115
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=29.96 E-value=1e+02 Score=23.89 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=40.3
Q ss_pred EEEEEEeCCcceEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccC----CCCCccCCCCEEEEeeC
Q 011341 377 VFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVG----DPRCKLKMGDVVELTPA 450 (488)
Q Consensus 377 i~v~~~~~~~~~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~----~l~~~L~~GD~VeIi~~ 450 (488)
|+|-+.+|..+ .++++...|+.++--.|....+.. .. ...-..+|+... -.++.+++|++|.++..
T Consensus 3 i~v~~~~g~~~-~~~v~~~~tv~~lK~~i~~~~g~~------~~-~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~ 72 (76)
T cd01806 3 IKVKTLTGKEI-EIDIEPTDKVERIKERVEEKEGIP------PQ-QQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLA 72 (76)
T ss_pred EEEEeCCCCEE-EEEECCCCCHHHHHHHHhHhhCCC------hh-hEEEEECCeEccCCCCHHHcCCCCCCEEEEEEE
Confidence 45555555543 578999999999998885543211 11 111123454331 14688999999998863
No 116
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=29.47 E-value=13 Score=37.73 Aligned_cols=49 Identities=18% Similarity=0.176 Sum_probs=37.8
Q ss_pred CCCCcHHHHHHHhcCCCCCCCCCCCCCccc----cccccCCcccCCCCCccCCCCEEEEe
Q 011341 393 PTSSTVMDLLERAGRGSSRWSPYGFPLKEE----LRPRLNHKAVGDPRCKLKMGDVVELT 448 (488)
Q Consensus 393 p~GsT~~DfAy~i~~~~~~~~~~g~~~~~~----v~akvN~~~v~~l~~~L~~GD~VeIi 448 (488)
-.-.|+.||--+||..+- ..|+++ ..++-|.+.| ..++.|.+-|+|.|+
T Consensus 304 ~~~~sv~dfc~~ih~~~~------~~fk~alvwg~s~kh~pq~v-g~~h~l~dedvv~iv 356 (358)
T KOG1487|consen 304 SERRSVEDFCNKIHKSIL------KQFKYALVWGSSVKHNPQRV-GKEHVLEDEDVVQIV 356 (358)
T ss_pred CCcccHHHHHHHHHHHHH------HhhhhheEeccccCcChhhc-chhheeccchhhhhc
Confidence 345789999999987642 223444 3678899999 699999999999997
No 117
>PF14907 NTP_transf_5: Uncharacterised nucleotidyltransferase
Probab=27.53 E-value=5.5e+02 Score=24.56 Aligned_cols=106 Identities=20% Similarity=0.319 Sum_probs=61.7
Q ss_pred hhcccChhh-HHHHHHhhhhhccCc-chHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHhcCCceeeeeccccChHHHHHH
Q 011341 137 LANRLGIST-WKVQLENLCFKHLNP-DQHTELSSKLVEC-FDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCK 213 (488)
Q Consensus 137 LA~rLGi~~-ik~ELedl~f~~l~p-~~y~~i~~~l~~~-~~~~~i~~~~~~l~~~L~~~gi~~~~v~~R~K~~~Si~~K 213 (488)
+|.+-++.. +..-|..+.....-| +...+++...... .+..........|.+.|+++||++..++|= .+ ..
T Consensus 11 ~a~~h~v~pll~~~l~~~~~~~~~p~~~~~~l~~~~~~~~~rn~~~~~~~~~i~~~l~~~gI~~~~lKG~-----~l-~~ 84 (249)
T PF14907_consen 11 LARRHRVAPLLYRNLKRLGLSDRPPDEVLQRLKSAYRRNALRNLRLLAELQEILAALNANGIPVILLKGA-----AL-AQ 84 (249)
T ss_pred HHHHcCCHHHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEchH-----HH-HH
Confidence 344445543 333366666555555 4555555544443 244455566667778899999998655551 11 11
Q ss_pred HhhcCCCCCCCCcceEEEEEeCChHHHHHHHHHHHhh-ccC
Q 011341 214 MLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQL-WAE 253 (488)
Q Consensus 214 ~~rk~~~~~~i~Dl~giRIiv~~~~dcy~vl~~i~~~-~~~ 253 (488)
.-.........| +-|.|. .+|..++..++.+. |.+
T Consensus 85 -~Y~~~~~R~~~D---iDlLV~-~~d~~~a~~~L~~~Gy~~ 120 (249)
T PF14907_consen 85 -LYPDPGLRPMGD---IDLLVP-PEDLERAVELLEELGYRI 120 (249)
T ss_pred -hCCCCCCCCCCC---eEEEEe-CCcHHHHHHHHHHcCCEe
Confidence 112222344555 577787 78888999988776 554
No 118
>PRK12720 secretion system apparatus protein SsaV; Provisional
Probab=27.37 E-value=2.6e+02 Score=32.15 Aligned_cols=193 Identities=16% Similarity=0.188 Sum_probs=112.1
Q ss_pred HHHHcCC---CHHHHHHHhhhccccccC---CCHHHHH---hHhhHHHHHHHHHhccccccchHHhhcccccchHHHHHH
Q 011341 18 LLAAIGA---NSTVVAAGLLHDTLDDAF---LSYDYIF---RTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRL 88 (488)
Q Consensus 18 iLa~lg~---D~~~i~AALLHDvvEDt~---~t~eel~---~~FG~~Va~lV~~vTk~~~~~~~~r~~~~~~~~~~~e~l 88 (488)
.+...|+ |+.+++|.=|..++.... ++.+|++ +...++--.+|+.+.+.-.+.. -.+-+
T Consensus 453 ~a~~~Gytvvd~~~viaTHL~evir~~a~ellg~qev~~Lld~l~~~~p~Lv~el~~~l~l~~------------i~~VL 520 (675)
T PRK12720 453 QAQGFGLDVFAGSQRISALLKCVLLRYMGEFIGVQETRYLMDAMEKRYGELVKELQRQLPVGK------------IAEIL 520 (675)
T ss_pred HHHHCCCEEEcHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhccCCHHH------------HHHHH
Confidence 3444453 889999988888876432 4544443 4556666677777633222221 12345
Q ss_pred HHHHh---hcCCchhhHHHHhhHHhhhccccCCChHHHHHHHHHHHHHhhhhhcccChhhHHHHHHhhhhhccCcc---h
Q 011341 89 HTMFL---AMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPD---Q 162 (488)
Q Consensus 89 Rkmll---a~~D~rvvlIKLADRLhNmrtl~~~~~~k~~~~A~Etl~iyaPLA~rLGi~~ik~ELedl~f~~l~p~---~ 162 (488)
|.+|- ++.|.+.++=-|||.-..-+....+.+.-|+++++....-|+.-.+.|....+..++|+.-..-+... .
T Consensus 521 q~LL~E~VsIRdl~tIlE~l~d~~~~~kd~~~LtE~VR~~L~r~I~~~~~~~~~~l~vi~l~p~~E~~l~~~i~~~~~g~ 600 (675)
T PRK12720 521 QRLVSERVSIRDLRTIFGTLVEWAPREKDVVMLTEYVRIALRRHILRRFNHEGKWLPVLRIGEGIENLIRESIRQTSAGT 600 (675)
T ss_pred HHHHhcCCccccHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeEEEEeCHHHHHHHHHHHhcccCCC
Confidence 55442 33488899889999876666666666677899999888888876677888888888887654322111 0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCceeeeeccccChHHHHHHHhhcCC------CCCCCCcceEEEEE
Q 011341 163 HTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKL------TMDEIHDIYGLRLI 233 (488)
Q Consensus 163 y~~i~~~l~~~~~~~~i~~~~~~l~~~L~~~gi~~~~v~~R~K~~~Si~~K~~rk~~------~~~~i~Dl~giRIi 233 (488)
|-. -.....+++++.+++.+++..-.+- +++- .+=...+|+.++.. +++||.+-.-++++
T Consensus 601 ~~~--------l~P~~~~~l~~~~~~~~~~~~~pVl-lts~--~iR~~lr~li~~~~p~l~VLS~~Ei~~~~~i~~~ 666 (675)
T PRK12720 601 YSA--------LSSRHSTQILQLIEQALKQSQKLVL-VTSV--DVRRFLRKIIERTLFDLPVLSWQELGDEAEIKVV 666 (675)
T ss_pred ccc--------cCHHHHHHHHHHHHHHHHccCCcEE-EeCH--HHHHHHHHHHHHhCCCCEEeCHhHcCCCCeEEEE
Confidence 000 0223445566666666655422221 2221 12234555555432 45777776666554
No 119
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=27.37 E-value=1.1e+02 Score=25.06 Aligned_cols=55 Identities=11% Similarity=0.027 Sum_probs=41.8
Q ss_pred cceEEEEEeCChHHHHHHHHHHHhhccCCCCcccCcccCCCCCCccceeEE-EEcCCeeeEEE
Q 011341 226 DIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTV-VTGEGLVPLEV 287 (488)
Q Consensus 226 Dl~giRIiv~~~~dcy~vl~~i~~~~~~~~~~~kDyI~~PK~nGYqSlH~~-v~~~~g~~~EI 287 (488)
...++-.++.+.+|+..+...+.+.--++ +..|+...+.+..+. +.+|+|..+||
T Consensus 73 ~~~~i~~~~~~~~dl~~~~~~l~~~g~~~-------~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 73 GGHHIAFLAFDVDDLDAAYERLKAQGVEI-------VEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp TSEEEEEEESSHHHHHHHHHHHHHTTGEE-------EEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred cceeEEEEeccHHHHHHHHHHHhhcCccE-------EecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 45789999999999999999998873111 123555667777766 88999998886
No 120
>TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative. dGTP triphosphohydrolase (dgt) releases inorganic triphosphate, an unusual activity reaction product, from GTP. Its activity has been called limited to the Enterobacteriaceae, although homologous sequences are detected elsewhere. This finding casts doubt on whether the activity is shared in other species. In several of these other species, the homologous gene is found in an apparent operon with dnaG, the DNA primase gene. The enzyme from E. coli was shown to bind coopertatively to single stranded DNA. The biological role of dgt is unknown.
Probab=27.18 E-value=38 Score=35.99 Aligned_cols=31 Identities=32% Similarity=0.266 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHc----CC-----------CH-HHHHHHhhhccc
Q 011341 8 YLLHCVETAMLLAAI----GA-----------NS-TVVAAGLLHDTL 38 (488)
Q Consensus 8 yi~H~l~VA~iLa~l----g~-----------D~-~~i~AALLHDvv 38 (488)
-++|.++||.+...+ +. +. -+-+|||+||+=
T Consensus 39 RltHslev~~i~r~~~~~l~~~~~~~~~~~~~~~~l~~~a~L~HDiG 85 (381)
T TIGR01353 39 RLTHSLEVAQVGRSIANLIGLRYDLELEELGPFERLAETACLAHDIG 85 (381)
T ss_pred HhHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHhcCC
Confidence 379999999976543 32 22 366788999974
No 121
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=25.67 E-value=1.1e+02 Score=23.34 Aligned_cols=65 Identities=18% Similarity=0.225 Sum_probs=38.1
Q ss_pred EEEEEEeCCcceEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCC----CCCccCCCCEEEEee
Q 011341 377 VFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGD----PRCKLKMGDVVELTP 449 (488)
Q Consensus 377 i~v~~~~~~~~~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~----l~~~L~~GD~VeIi~ 449 (488)
|+|-+++|+. ..+.++...|+.++--+|....+... ....-..+|+...+ .++-+++|++|.++.
T Consensus 3 i~vk~~~g~~-~~~~v~~~~tv~~lK~~i~~~~gi~~-------~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 3 IKVKTLDSQT-HTFTVEEEITVLDLKEKIAEEVGIPV-------EQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred EEEEeCCCCE-EEEEECCCCcHHHHHHHHHHHHCcCH-------HHeEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 4444444542 36888999999999988854322110 01111235554421 347789999998763
No 122
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=25.53 E-value=3.1e+02 Score=22.70 Aligned_cols=54 Identities=7% Similarity=-0.047 Sum_probs=37.1
Q ss_pred ceEEEEEeCChHHHHHHHHHHHhhccCCCCcccCcccCCCCCCccceeEEEEcCCeeeEEE
Q 011341 227 IYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEV 287 (488)
Q Consensus 227 l~giRIiv~~~~dcy~vl~~i~~~~~~~~~~~kDyI~~PK~nGYqSlH~~v~~~~g~~~EI 287 (488)
-.++.+.|.+++|+..+...+.+.--.+.. .|....|-.....+.+|+|..+|+
T Consensus 67 ~~~l~~~~~~~~dvd~~~~~l~~~G~~~~~-------~~~~~~~g~~~~~~~DPdG~~iel 120 (122)
T cd07235 67 RIALAFLCETPAEVDALYAELVGAGYPGHK-------EPWDAPWGQRYAIVKDPDGNLVDL 120 (122)
T ss_pred cEEEEEEcCCHHHHHHHHHHHHHCCCCcCC-------CCccCCCCCEEEEEECCCCCEEEE
Confidence 356778888999999999998876432221 233223333556889999999987
No 123
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.52 E-value=44 Score=36.44 Aligned_cols=81 Identities=16% Similarity=0.190 Sum_probs=57.4
Q ss_pred EEeCCcceEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEeeCCCCcc----H
Q 011341 381 MIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKS----L 456 (488)
Q Consensus 381 ~~~~~~~~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~~~~~~~----~ 456 (488)
+|+|. .+...--+.||.|.|.. ..++ ...++-++|||..- +++.+|+.. -.|+++-.++.+ |
T Consensus 5 Lpdg~--~~~~~~w~ttp~~ia~~-s~~l---------a~~~~~~~vn~~~~-Dl~rp~e~~-~lell~f~~~~~k~vfw 70 (560)
T KOG1637|consen 5 LPDGK--VVEGVSWETTPYDIACQ-SKGL---------ADDAVIAKVNGVLW-DLDRPLEGD-CLELLKFDDDEGKDVFW 70 (560)
T ss_pred cCCcc--eeeeeeccCChhHHhhh-ccch---------hhhhHHHhhcCcee-ccCCcchhh-HHHHccCCCcccceeee
Confidence 56665 34556788999999987 2221 25678899999986 799999754 499998444333 5
Q ss_pred H----HHHHHHHHHhhhccccCC
Q 011341 457 T----EYREEIQRMYERGLAVSN 475 (488)
Q Consensus 457 ~----~~~~~i~~~~~~~~~~~~ 475 (488)
- .+-++.-+.|.--+-+||
T Consensus 71 hssahvlg~a~e~~~g~~lc~Gp 93 (560)
T KOG1637|consen 71 HSSAHVLGEALEQEYGAHLCIGP 93 (560)
T ss_pred ehhhhHhhHHHHHhcCeeEeeCC
Confidence 4 458889999963388887
No 124
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=25.24 E-value=7.8e+02 Score=28.74 Aligned_cols=83 Identities=19% Similarity=0.344 Sum_probs=45.1
Q ss_pred hcCCchhhHHHHhhHHhhhccccCCChHHHHHHHHHHHHHhhhhhcccC--hhhHHHHHHhhhhhccCcchHHHHHHHHH
Q 011341 94 AMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLG--ISTWKVQLENLCFKHLNPDQHTELSSKLV 171 (488)
Q Consensus 94 a~~D~rvvlIKLADRLhNmrtl~~~~~~k~~~~A~Etl~iyaPLA~rLG--i~~ik~ELedl~f~~l~p~~y~~i~~~l~ 171 (488)
.+.++. ||||-+.+.-.+. .+..+. -.|+.++ -.||- +..++.|++.+-+ .-+.-.++++.++
T Consensus 159 ~i~~~~----klad~iaa~l~~~---~~~kQ~-iLe~~~v----~~Rlek~l~~l~~ei~~~~~---ek~I~~kVk~~me 223 (782)
T COG0466 159 SIDDPG----KLADTIAAHLPLK---LEEKQE-ILETLDV----KERLEKLLDLLEKEIDLLQL---EKRIRKKVKEQME 223 (782)
T ss_pred cccchH----HHHHHHHHhCCCC---HHHHHH-HHHhCCH----HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 444555 9999987665552 233222 2333333 34441 3355666664333 2333445555566
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 011341 172 ECFDEAMVTSAIEKLEQALK 191 (488)
Q Consensus 172 ~~~~~~~i~~~~~~l~~~L~ 191 (488)
++.||-++.+-...|++.|-
T Consensus 224 K~QREyyL~EQlKaIqkELG 243 (782)
T COG0466 224 KSQREYYLREQLKAIQKELG 243 (782)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 66677777777777777664
No 125
>TIGR01017 rpsD_bact ribosomal protein S4, bacterial/organelle type. This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4.
Probab=25.21 E-value=49 Score=31.93 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=21.3
Q ss_pred cccCCcccCCCCCccCCCCEEEEee
Q 011341 425 PRLNHKAVGDPRCKLKMGDVVELTP 449 (488)
Q Consensus 425 akvN~~~v~~l~~~L~~GD~VeIi~ 449 (488)
+.|||+.+...++.++.||+|+|-.
T Consensus 117 V~VNgk~v~~ps~~V~~GD~I~V~~ 141 (200)
T TIGR01017 117 ILVNGKKVDIPSYQVRPGDIISIKE 141 (200)
T ss_pred EEECCEEeCCCCCCCCCCCEEEEee
Confidence 5799998855799999999998764
No 126
>PRK05327 rpsD 30S ribosomal protein S4; Validated
Probab=25.05 E-value=49 Score=32.04 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=21.2
Q ss_pred cccCCcccCCCCCccCCCCEEEEee
Q 011341 425 PRLNHKAVGDPRCKLKMGDVVELTP 449 (488)
Q Consensus 425 akvN~~~v~~l~~~L~~GD~VeIi~ 449 (488)
+.|||+.|...++.|+.||+|+|-.
T Consensus 120 V~VNgk~v~~ps~~v~~GD~I~v~~ 144 (203)
T PRK05327 120 ILVNGKKVNIPSYRVKPGDVIEVRE 144 (203)
T ss_pred EEECCEEECCCCcCCCCCCEEEECC
Confidence 5799998844799999999998764
No 127
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=24.50 E-value=2.4e+02 Score=31.69 Aligned_cols=60 Identities=15% Similarity=0.041 Sum_probs=37.8
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCC-CCCCCC-CCcccc--ccccCCc---ccCCCCCccCCCCEEEE
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSR-WSPYGF-PLKEEL--RPRLNHK---AVGDPRCKLKMGDVVEL 447 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~-~~~~g~-~~~~~v--~akvN~~---~v~~l~~~L~~GD~VeI 447 (488)
..++.|+|.|++|.|-..|-++.. |..-+. ....|- -+.|+|+ +++.=.++.++|-+|+-
T Consensus 6 ~~~~~~~g~~il~a~~~~gi~ip~~C~~~~l~~~g~Cr~C~v~v~g~~~~~~~aC~~~~~~gm~v~t 72 (603)
T TIGR01973 6 KELEVPKGTTVLQACLSAGIEIPRFCYHEKLSIAGNCRMCLVEVEKFPDKPVASCATPVTDGMKIST 72 (603)
T ss_pred EEEEeCCCCHHHHHHHHcCCCccccCCCCCCCCCCccccCEEEECCCCCCcccccCCCCCCCCEEEe
Confidence 588999999999999986544421 110000 011221 2467774 56667899999998765
No 128
>PF09371 Tex_N: Tex-like protein N-terminal domain; InterPro: IPR018974 This presumed domain is found at the N terminus of Q45388 from SWISSPROT. This protein defines a novel family of prokaryotic transcriptional accessory factors []. ; PDB: 2OCE_A 3BZK_A 3BZC_A.
Probab=24.01 E-value=6.5e+02 Score=24.18 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=21.3
Q ss_pred HHHHHHHhhhh----------hcccChhhHHHHH--------HhhhhhccCcc
Q 011341 127 AKETLEIFVPL----------ANRLGISTWKVQL--------ENLCFKHLNPD 161 (488)
Q Consensus 127 A~Etl~iyaPL----------A~rLGi~~ik~EL--------edl~f~~l~p~ 161 (488)
..|--+||+|. |..+|+.++..-| +..+-.|++|+
T Consensus 88 l~elEdlY~PyK~kr~T~A~~Are~GLeplA~~il~~~~~~~~~~a~~~v~~~ 140 (193)
T PF09371_consen 88 LQELEDLYLPYKPKRKTRATIAREAGLEPLADKILEQPESDPEVEAKKFVNEE 140 (193)
T ss_dssp HHHHHHHHGGGS---S-HHHHHHHTTTHHHHHHHHH-TTS-HHHHHHTT-BGG
T ss_pred HHHHHHHHhhhccCcCCHHHHHHHcCCHHHHHHHHcCCccchHHHHHHHhCcc
Confidence 34555777776 7777877665543 34455666666
No 129
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=23.48 E-value=1.7e+02 Score=24.40 Aligned_cols=47 Identities=17% Similarity=0.075 Sum_probs=28.6
Q ss_pred ChHHHHHHHHHHHhhccCCCCcccCcccCCCCCCccceeEEEEcCCeeeEEEE
Q 011341 236 NEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQ 288 (488)
Q Consensus 236 ~~~dcy~vl~~i~~~~~~~~~~~kDyI~~PK~nGYqSlH~~v~~~~g~~~EIQ 288 (488)
..+|+..++..+.+.--. .++..|....|....+.+.+|+|..+||+
T Consensus 71 ~v~dvd~~~~~l~~~g~~------~~~~~~~~~~~g~r~~~~~DPdGn~iei~ 117 (120)
T cd09011 71 EEEDFDAFLDKLKRYDNI------EYVHPIKEHPWGQRVVRFYDPDKHIIEVG 117 (120)
T ss_pred EehhhHHHHHHHHhcCCc------EEecCcccCCCccEEEEEECCCCCEEEEe
Confidence 445677777777665311 11223444444445668899999999985
No 130
>TIGR01398 FlhA flagellar biosynthesis protein FlhA. This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model.
Probab=23.48 E-value=7.9e+02 Score=28.41 Aligned_cols=119 Identities=18% Similarity=0.177 Sum_probs=77.9
Q ss_pred CHHHHHHHhhhccccccC---CCHHHHH---hHhhHHHHHHHHHhcc-ccccchHHhhcccccchHHHHHHHHHHh---h
Q 011341 25 NSTVVAAGLLHDTLDDAF---LSYDYIF---RTFGAGVADLVEGVSK-LSQLSKLARENNTASKTVEADRLHTMFL---A 94 (488)
Q Consensus 25 D~~~i~AALLHDvvEDt~---~t~eel~---~~FG~~Va~lV~~vTk-~~~~~~~~r~~~~~~~~~~~e~lRkmll---a 94 (488)
|+.++++.=|..++.... ++.+|++ +...++=-.+|+.+.. .-.+.. -.+-+|.+|- +
T Consensus 467 d~~~vi~tHL~evi~~~a~ellgrqevq~Lld~l~~~~p~lveel~p~~~~l~~------------l~~VLq~LL~E~Vs 534 (678)
T TIGR01398 467 DPATVLATHLSEVIKNNAAELLTRQEVQNLLDRLKEEYPKLVEELIPDKVPLGT------------IQKVLQLLLRERVS 534 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHChHHHHHhccCCCCHHH------------HHHHHHHHHhcCCc
Confidence 888888888877776432 4444433 3455555556666543 111211 1233444432 2
Q ss_pred cCCchhhHHHHhhHHhhhccccCCChHHHHHHHHHHHHHhhhhhcccChhhHHHHHHhhhh
Q 011341 95 MADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCF 155 (488)
Q Consensus 95 ~~D~rvvlIKLADRLhNmrtl~~~~~~k~~~~A~Etl~iyaPLA~rLGi~~ik~ELedl~f 155 (488)
+.|.+.++=-|||.-..-+....+.+.-|+++++....=|++--+.|-...+..++|++-.
T Consensus 535 IRdl~tIlE~l~d~~~~~kd~~~LtE~VR~~L~r~I~~~~~~~~~~L~vi~l~p~~E~~l~ 595 (678)
T TIGR01398 535 IRNLPTILETLADYAPITKDPDLLVEHVRQRLGRQITQQYLDEDGVLPVITLDPDLEAALA 595 (678)
T ss_pred cccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEEeCHHHHHHHH
Confidence 3488888888998877666666666677899999888888876667888888888888654
No 131
>CHL00113 rps4 ribosomal protein S4; Reviewed
Probab=23.20 E-value=54 Score=31.79 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=21.2
Q ss_pred cccCCcccCCCCCccCCCCEEEEee
Q 011341 425 PRLNHKAVGDPRCKLKMGDVVELTP 449 (488)
Q Consensus 425 akvN~~~v~~l~~~L~~GD~VeIi~ 449 (488)
+.|||+.|...++.++.||+|+|-.
T Consensus 116 V~VNGk~v~~ps~~Vk~GD~I~V~~ 140 (201)
T CHL00113 116 ILVNGRIVDIPSYRCKPKDIITVKD 140 (201)
T ss_pred EEECCEEecCccccCCCCCEEEEcc
Confidence 5799998855799999999999754
No 132
>PF13037 DUF3898: Domain of unknown function (DUF3898)
Probab=22.74 E-value=53 Score=27.61 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=20.4
Q ss_pred EEEEEEeCCcceEEecCCCCcHHHHH
Q 011341 377 VFVIMIENDKMSVQEFPTSSTVMDLL 402 (488)
Q Consensus 377 i~v~~~~~~~~~~~~lp~GsT~~DfA 402 (488)
=||++.+| |.+.+-+|.+|+.|-
T Consensus 55 RYv~liEg---d~~~FEKG~SPVEfl 77 (91)
T PF13037_consen 55 RYVLLIEG---DSLQFEKGFSPVEFL 77 (91)
T ss_pred EEEEEEEc---ceEEEccCCCceeee
Confidence 49999999 588999999999984
No 133
>PRK04926 dgt deoxyguanosinetriphosphate triphosphohydrolase; Provisional
Probab=22.52 E-value=53 Score=36.30 Aligned_cols=13 Identities=23% Similarity=0.207 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHH
Q 011341 8 YLLHCVETAMLLA 20 (488)
Q Consensus 8 yi~H~l~VA~iLa 20 (488)
-++|.++|+.+-.
T Consensus 66 RltHSleV~~i~r 78 (503)
T PRK04926 66 RLTHSLEVQQVGR 78 (503)
T ss_pred HhHHHHHHHHHHH
Confidence 3799999998654
No 134
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=22.44 E-value=1.7e+02 Score=33.61 Aligned_cols=64 Identities=17% Similarity=0.103 Sum_probs=38.6
Q ss_pred EEeCCcceEEecCCCCcHHHHHHHhcCCCCCC-CCCC-CCCccccc--cccCC---cccCCCCCccCCCCEEEE
Q 011341 381 MIENDKMSVQEFPTSSTVMDLLERAGRGSSRW-SPYG-FPLKEELR--PRLNH---KAVGDPRCKLKMGDVVEL 447 (488)
Q Consensus 381 ~~~~~~~~~~~lp~GsT~~DfAy~i~~~~~~~-~~~g-~~~~~~v~--akvN~---~~v~~l~~~L~~GD~VeI 447 (488)
+.|| ..+++|+|.|++|.|-+.|-++... ..-+ .....|-= +.|+| +++++=.+++++|-+|.-
T Consensus 5 ~Idg---~~v~v~~g~til~a~~~~gi~IP~lCy~~~l~~~g~Cr~ClVev~~~~~~~~~sC~~~v~~gm~v~T 75 (687)
T PRK09130 5 KVDG---KEIEVPDGYTLLQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVKGGPPKPVASCAMPVGEGMVIFT 75 (687)
T ss_pred EECC---EEEEeCCCCHHHHHHHHcCCCcCcccCCCCCCCCCCCCCCEEEECCCCCCcccccCCCCCCCCEEEe
Confidence 4456 5889999999999998876555321 0000 00012211 34555 366557789999987763
No 135
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=22.41 E-value=51 Score=31.19 Aligned_cols=38 Identities=21% Similarity=0.434 Sum_probs=30.0
Q ss_pred HHHHHHHcCC---CHHHHHHHhhhccccccCCCHHHHHhHhhHHH
Q 011341 15 TAMLLAAIGA---NSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGV 56 (488)
Q Consensus 15 VA~iLa~lg~---D~~~i~AALLHDvvEDt~~t~eel~~~FG~~V 56 (488)
|+.+|+++|. |.|.++ |++++....-...|.+.||++|
T Consensus 16 v~~~l~~~G~~vidaD~i~----~~l~~~~~~~~~~l~~~FG~~i 56 (180)
T PF01121_consen 16 VSKILAELGFPVIDADEIA----HELYEPGSEGYKALKERFGEEI 56 (180)
T ss_dssp HHHHHHHTT-EEEEHHHHH----HHCTSCTCHHHHHHHHHHGGGG
T ss_pred HHHHHHHCCCCEECccHHH----HHHhhcCHHHHHHHHHHcCccc
Confidence 5778888885 778776 8888866666789999999876
No 136
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=22.19 E-value=1.2e+02 Score=30.45 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=24.7
Q ss_pred CCcchhHHHHHHHHHHHHcCCCHHHH-HHHhhhcc
Q 011341 4 SGDPYLLHCVETAMLLAAIGANSTVV-AAGLLHDT 37 (488)
Q Consensus 4 sG~Pyi~H~l~VA~iLa~lg~D~~~i-~AALLHDv 37 (488)
...|-|.|.+..|+....-..+++-+ .+||+||.
T Consensus 59 ~d~~~i~H~lQTAEaiR~d~~~~dW~~LtGLiHDL 93 (253)
T PF05153_consen 59 TDLPQIQHALQTAEAIRRDHPDPDWMQLTGLIHDL 93 (253)
T ss_dssp --S-HHHHHHHHHHHHHHHSTT-HHHHHHHHHTTG
T ss_pred CchhHHHHHHHHHHHHHHhCCCcchhhheehhccc
Confidence 34578999999999888665566655 79999996
No 137
>PRK01096 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=21.89 E-value=79 Score=34.36 Aligned_cols=30 Identities=30% Similarity=0.390 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHc----C----CC------------HHHHHHHhhhccc
Q 011341 9 LLHCVETAMLLAAI----G----AN------------STVVAAGLLHDTL 38 (488)
Q Consensus 9 i~H~l~VA~iLa~l----g----~D------------~~~i~AALLHDvv 38 (488)
++|.++|+.+...+ + .+ .-+-+|||+||+=
T Consensus 63 ltHsleV~~i~r~i~~~l~~~l~~~~~~~~~~~~~~~~lv~aa~L~HDiG 112 (440)
T PRK01096 63 LTHSLEVSCVGRSLGMRVGETLKEEKLPDWISPADIGAIVQSACLAHDIG 112 (440)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHhcCC
Confidence 79999999975443 2 11 1457889999973
No 138
>TIGR03069 PS_II_S4 photosystem II S4 domain protein. Members of this protein family are about 265 residues long and each contains an S4 RNA-binding domain of about 48 residues. The member from the Cyanobacterium, Synechocystis sp. PCC 6803, was detected as a novel polypeptide in a highly purified preparation of active photosystem II (Kashino, et al., 2002). The phylogenetic distribution, including Cyanobacteria and Arabidopsis, supports a role in photosystem II, although the high bit score cutoffs for this model reflect similar sequences in non-photosynthetic organisms such as Carboxydothermus hydrogenoformans, a Gram-positive bacterium.
Probab=21.60 E-value=62 Score=32.51 Aligned_cols=25 Identities=48% Similarity=0.706 Sum_probs=21.5
Q ss_pred ccccCCcccCCCCCccCCCCEEEEe
Q 011341 424 RPRLNHKAVGDPRCKLKMGDVVELT 448 (488)
Q Consensus 424 ~akvN~~~v~~l~~~L~~GD~VeIi 448 (488)
.++|||+.+...++.++.||+|.|-
T Consensus 209 ~V~VNg~~v~~~s~~v~~gD~Isvr 233 (257)
T TIGR03069 209 RLRLNWKTVTQPSRELKVGDRLQLR 233 (257)
T ss_pred eEEECCEEcCCCCCcCCCCCEEEEc
Confidence 4689999985589999999999875
No 139
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=21.58 E-value=1.7e+02 Score=34.27 Aligned_cols=82 Identities=12% Similarity=0.125 Sum_probs=46.1
Q ss_pred EEEeCCcceEEecCCCCcHHHHHHHhcCCCCC-CCC-CCCCCccccc--cccCCc--ccCCCCCccCCCCEEEEeeCCCC
Q 011341 380 IMIENDKMSVQEFPTSSTVMDLLERAGRGSSR-WSP-YGFPLKEELR--PRLNHK--AVGDPRCKLKMGDVVELTPAIPD 453 (488)
Q Consensus 380 ~~~~~~~~~~~~lp~GsT~~DfAy~i~~~~~~-~~~-~g~~~~~~v~--akvN~~--~v~~l~~~L~~GD~VeIi~~~~~ 453 (488)
++.|| ..++.|+|.|++|.|...+.++.. |.. .-.....|-- +.|+|. ++++=.+++++|-+|+=- ..+
T Consensus 7 ~~idg---~~~~~~~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev~g~~~~~~aC~t~v~~gm~V~t~--~~s 81 (797)
T PRK07860 7 LTIDG---VEVSVPKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEVEGQRKPQASCTTTVTDGMVVKTQ--LTS 81 (797)
T ss_pred EEECC---EEEEeCCCChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEECCCcccccccCCCCCCCcEEEeC--CCC
Confidence 44566 588999999999999886544321 110 0001122322 457775 454467899999987643 222
Q ss_pred ccHHHHHHHHHHH
Q 011341 454 KSLTEYREEIQRM 466 (488)
Q Consensus 454 ~~~~~~~~~i~~~ 466 (488)
+.....|+.+-++
T Consensus 82 ~~v~~~r~~~le~ 94 (797)
T PRK07860 82 PVADKAQHGVMEL 94 (797)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444333
No 140
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=21.19 E-value=1.2e+02 Score=31.45 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=29.5
Q ss_pred EEecCCCCcHHHHHHHhcCCCC-CCCCCCCCCc--cc--cccccCCcccCCCCCccC
Q 011341 389 VQEFPTSSTVMDLLERAGRGSS-RWSPYGFPLK--EE--LRPRLNHKAVGDPRCKLK 440 (488)
Q Consensus 389 ~~~lp~GsT~~DfAy~i~~~~~-~~~~~g~~~~--~~--v~akvN~~~v~~l~~~L~ 440 (488)
.+++++|.|++|++-.|+.++. ... +..... .| -+++|||+.+-.=.+.+.
T Consensus 22 ~v~~~~~~tvL~~l~~i~~~~d~tL~-~~~~c~~~~Cg~C~v~inG~~~laC~t~v~ 77 (329)
T PRK12577 22 TLEVEPGNTILDCLNRIKWEQDGSLA-FRKNCRNTICGSCAMRINGRSALACKENVG 77 (329)
T ss_pred EEECCCCChHHHHHHHhCCcCCCCcE-EcCCCCCCCCCCCEEEECCeeecCcccchh
Confidence 4578899999999999876542 000 000011 11 257999997521244544
No 141
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=20.84 E-value=1e+02 Score=32.19 Aligned_cols=138 Identities=19% Similarity=0.199 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHH----HcCCCH----HHHHHHhhhcccc----------ccCCCHHHH---Hh--HhhHHHHHHHHHhcc
Q 011341 9 LLHCVETAMLLA----AIGANS----TVVAAGLLHDTLD----------DAFLSYDYI---FR--TFGAGVADLVEGVSK 65 (488)
Q Consensus 9 i~H~l~VA~iLa----~lg~D~----~~i~AALLHDvvE----------Dt~~t~eel---~~--~FG~~Va~lV~~vTk 65 (488)
..|+..||.+.. .+|++. +.-.||+|||+=. -+.+|.+|- .. .+|..+..-+. .
T Consensus 150 ~~Hs~~va~~a~~ia~~lgl~~~~i~~l~~aalLHDIGKi~ip~~IL~K~g~Lt~eE~~~ik~H~~~g~~iL~~~~---~ 226 (344)
T COG2206 150 YGHSVRVAELAEAIAKKLGLSEEKIEELALAGLLHDIGKIGIPDSILNKPGKLTEEEFEIIKKHPIYGYDILKDLP---E 226 (344)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccccCCHHHhCCCCCCCHHHHHHHHhchHHHHHHHHhcc---c
Confidence 479999998554 567764 5778999999722 133566553 22 25655443322 2
Q ss_pred cccc-chHH-hhcccccchHHHHHHHHHHhhc-CCchhhHHHHhhHHhhhccccCCChHHHHHHHHHHHHHhhhhhcccC
Q 011341 66 LSQL-SKLA-RENNTASKTVEADRLHTMFLAM-ADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLG 142 (488)
Q Consensus 66 ~~~~-~~~~-r~~~~~~~~~~~e~lRkmlla~-~D~rvvlIKLADRLhNmrtl~~~~~~k~~~~A~Etl~iyaPLA~rLG 142 (488)
+... .... +..+......+-..++ +- .+.-+.+|.+||=.+.|..-+ |-+...-..|+
T Consensus 227 ~~~~~~~~~l~HHEr~DGtGYP~GL~----GeeI~l~aRIiAVADvydAlts~R---pYkka~s~~~A------------ 287 (344)
T COG2206 227 FLESVRAVALRHHERWDGTGYPRGLK----GEEIPLEARIIAVADVYDALTSDR---PYKKAKSPEEA------------ 287 (344)
T ss_pred ccHHHHHHHHHhhhccCCCCCCCCCC----cccCChHhHHHHHhhHHHHHhcCC---CCcccCCHHHH------------
Confidence 1110 0000 0000000000111110 11 267889999999999998432 11212222222
Q ss_pred hhhHHHHHHhhhhhccCcchHHHHHHHHHh
Q 011341 143 ISTWKVQLENLCFKHLNPDQHTELSSKLVE 172 (488)
Q Consensus 143 i~~ik~ELedl~f~~l~p~~y~~i~~~l~~ 172 (488)
-.+|...+.+.++|+..+.+.+.+..
T Consensus 288 ----l~~l~~~~~~~fDp~vv~~~~~~~~~ 313 (344)
T COG2206 288 ----LEELRKNSGGKFDPKVVDAFLKALSK 313 (344)
T ss_pred ----HHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 24566677888899888877766644
No 142
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=20.59 E-value=52 Score=30.19 Aligned_cols=45 Identities=18% Similarity=0.143 Sum_probs=25.4
Q ss_pred HHHHHHHHHhh-ccCCCCcccCcccCCC----CCCccceeEEEEcCCeeeEE
Q 011341 240 CYQALRVVHQL-WAEVPGKMKDYITRPK----FNGYQSLHTVVTGEGLVPLE 286 (488)
Q Consensus 240 cy~vl~~i~~~-~~~~~~~~kDyI~~PK----~nGYqSlH~~v~~~~g~~~E 286 (488)
|..=...++.+ |++.....+|+-+.-+ +--+||-||.|++ |..||
T Consensus 39 C~~w~~~mk~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~--Gy~vE 88 (149)
T COG3019 39 CDEWAQHMKANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVIN--GYYVE 88 (149)
T ss_pred HHHHHHHHHhCCcEEEEeecCcHHHHHHhcCCChhhccccEEEEc--CEEEe
Confidence 34444444433 5544444445543322 1348999999995 77777
No 143
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=20.28 E-value=1.4e+02 Score=24.65 Aligned_cols=53 Identities=17% Similarity=0.117 Sum_probs=24.8
Q ss_pred hhhhhcccChhhHHHHHHhhhhhccCcchHHHHHHHHHhhhh-HHHHHHHHHHH
Q 011341 134 FVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFD-EAMVTSAIEKL 186 (488)
Q Consensus 134 yaPLA~rLGi~~ik~ELedl~f~~l~p~~y~~i~~~l~~~~~-~~~i~~~~~~l 186 (488)
+-++|++||+..-+=|--....+-+.-..|+-++.+.....+ ++.++.++..|
T Consensus 14 wk~~~R~LGlse~~Id~ie~~~~~~~Eq~yqmL~~W~~~~g~~~At~~~L~~aL 67 (80)
T cd08313 14 WKEFVRRLGLSDNEIERVELDHRRCRDAQYQMLKVWKERGPRPYATLQHLLSVL 67 (80)
T ss_pred HHHHHHHcCCCHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCCcchHHHHHHHH
Confidence 346789999997443322222222223334444444433332 34444444433
No 144
>PF04753 Corona_NS2: Coronavirus non-structural protein NS2; InterPro: IPR006841 This is a family of Coronavirus nonstructural protein NS2. Phosphoamino acid analysis confirmed the phosphorylated nature of NS2 and identified serine and threonine as its phosphorylated amino acid residues []. It was also demonstrated that the ns2 gene product is not essential for Murine hepatitis virus replication in transformed murine cells [].
Probab=20.24 E-value=46 Score=28.43 Aligned_cols=12 Identities=42% Similarity=0.852 Sum_probs=9.8
Q ss_pred HHHHhhhhhccC
Q 011341 148 VQLENLCFKHLN 159 (488)
Q Consensus 148 ~ELedl~f~~l~ 159 (488)
.||||+||+|-+
T Consensus 20 t~LED~CfkfNY 31 (109)
T PF04753_consen 20 TELEDFCFKFNY 31 (109)
T ss_pred chHHHHHHHhcc
Confidence 689999999643
Done!