Query 011341
Match_columns 488
No_of_seqs 333 out of 2222
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 06:07:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011341.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011341hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vj7_A Bifunctional RELA/SPOT; 100.0 3E-102 1E-106 807.4 25.9 330 1-338 43-377 (393)
2 3l9d_A SMU.1046C, putative GTP 100.0 5.3E-46 1.8E-50 365.0 13.5 191 132-338 19-220 (255)
3 2be3_A GTP pyrophosphokinase; 100.0 4.5E-40 1.5E-44 319.1 13.0 153 197-353 42-210 (226)
4 3nqw_A CG11900; stringent resp 100.0 8.9E-31 3E-35 245.6 9.6 143 4-157 29-176 (179)
5 3nr1_A HD domain-containing pr 100.0 4.3E-29 1.5E-33 233.9 12.2 125 2-137 23-156 (178)
6 3hvz_A Uncharacterized protein 99.7 6.6E-19 2.3E-23 143.0 2.1 65 361-451 5-69 (78)
7 2eki_A DRG 1, developmentally- 99.4 2.8E-13 9.4E-18 112.6 5.1 72 362-450 10-87 (93)
8 2kmm_A Guanosine-3',5'-BIS(dip 98.9 5.1E-10 1.8E-14 88.6 3.9 54 388-451 11-64 (73)
9 1tke_A Threonyl-tRNA synthetas 98.9 4.7E-10 1.6E-14 108.1 2.8 79 388-476 10-97 (224)
10 1wwt_A Threonyl-tRNA synthetas 98.9 6.9E-10 2.3E-14 91.4 2.3 65 379-456 14-79 (88)
11 1wxq_A GTP-binding protein; st 98.6 7.7E-09 2.6E-13 107.8 2.6 53 388-450 341-395 (397)
12 1qf6_A THRRS, threonyl-tRNA sy 97.5 2.2E-05 7.4E-10 86.6 2.0 85 379-476 4-97 (642)
13 1f0z_A THis protein; ubiquitin 97.2 0.00025 8.5E-09 54.9 4.2 52 388-451 8-63 (66)
14 1tyg_B YJBS; alpha beta barrel 97.2 0.0004 1.4E-08 57.1 5.5 51 388-450 28-83 (87)
15 2hj1_A Hypothetical protein; s 97.2 0.0003 1E-08 59.0 4.6 52 388-449 28-84 (97)
16 2l32_A Small archaeal modifier 97.2 0.00066 2.2E-08 54.0 6.1 51 389-452 14-64 (74)
17 1nyr_A Threonyl-tRNA synthetas 97.1 5.7E-05 1.9E-09 83.3 -0.5 79 388-476 12-99 (645)
18 2kl0_A Putative thiamin biosyn 97.1 0.00044 1.5E-08 54.8 4.7 51 388-450 8-61 (73)
19 2k5p_A THis protein, thiamine- 97.1 0.0004 1.4E-08 55.8 4.4 56 381-450 4-65 (78)
20 1ryj_A Unknown; beta/alpha pro 97.1 0.00077 2.6E-08 52.8 5.4 50 390-451 18-67 (70)
21 1rws_A Hypothetical protein PF 97.0 0.00021 7.3E-09 57.1 1.9 51 388-450 23-73 (77)
22 2cu3_A Unknown function protei 96.9 0.001 3.6E-08 51.0 4.8 51 388-451 7-61 (64)
23 4a9a_A Ribosome-interacting GT 96.4 0.0016 5.6E-08 67.1 3.9 51 392-449 320-375 (376)
24 1jal_A YCHF protein; nucleotid 96.2 0.0022 7.6E-08 65.8 3.2 54 388-448 291-360 (363)
25 2ohf_A Protein OLA1, GTP-bindi 96.1 0.0016 5.4E-08 67.7 1.8 58 388-452 317-390 (396)
26 2dby_A GTP-binding protein; GD 96.0 0.0025 8.4E-08 65.6 2.5 54 388-448 296-365 (368)
27 2q5w_D Molybdopterin convertin 95.8 0.0043 1.5E-07 48.9 2.5 53 389-450 19-73 (77)
28 1vjk_A Molybdopterin convertin 95.3 0.017 5.7E-07 47.9 4.5 61 388-450 29-94 (98)
29 3rpf_C Molybdopterin convertin 94.8 0.03 1E-06 43.9 4.6 55 390-450 16-70 (74)
30 3po0_A Small archaeal modifier 94.7 0.022 7.6E-07 46.1 3.7 62 388-450 20-85 (89)
31 1fm0_D Molybdopterin convertin 93.9 0.066 2.2E-06 42.3 4.9 55 393-450 23-77 (81)
32 2g1e_A Hypothetical protein TA 93.6 0.065 2.2E-06 43.1 4.4 60 389-450 18-86 (90)
33 1ni3_A YCHF GTPase, YCHF GTP-b 93.4 0.025 8.5E-07 58.6 1.9 54 388-448 319-388 (392)
34 2paq_A 5'-deoxynucleotidase YF 92.5 1.2 4E-05 41.7 11.9 95 5-112 29-144 (201)
35 3b57_A LIN1889 protein; Q92AN1 90.2 0.77 2.6E-05 42.8 8.0 34 8-41 26-64 (209)
36 2qgs_A Protein Se1688; alpha-h 88.7 1.5 5E-05 41.4 8.8 33 8-40 26-64 (225)
37 2l52_A Methanosarcina acetivor 88.3 0.48 1.6E-05 39.2 4.5 60 389-450 22-95 (99)
38 3dto_A BH2835 protein; all alp 86.5 2.1 7.1E-05 40.6 8.4 33 7-39 25-62 (223)
39 3dwg_C 9.5 kDa culture filtrat 86.3 0.27 9.2E-06 39.9 1.7 61 390-451 21-90 (93)
40 2pjq_A Uncharacterized protein 85.7 2 6.7E-05 40.8 7.8 32 8-39 31-67 (231)
41 2pq7_A Predicted HD superfamil 84.9 3 0.0001 38.8 8.6 33 5-37 31-68 (220)
42 1v8c_A MOAD related protein; r 79.6 1.2 4E-05 40.6 3.4 60 389-450 17-83 (168)
43 3djb_A Hydrolase, HD family; a 78.8 4.5 0.00015 38.2 7.3 33 7-39 25-62 (223)
44 1wgk_A Riken cDNA 2900073H19 p 77.2 2.9 9.9E-05 35.5 4.9 61 389-450 33-104 (114)
45 2qjl_A URM1, ubiquitin-related 76.2 2.1 7E-05 35.1 3.6 61 389-450 23-95 (99)
46 3gw7_A Uncharacterized protein 72.8 2.6 8.8E-05 40.5 3.9 32 9-40 27-63 (239)
47 2ogi_A Hypothetical protein SA 72.7 2.7 9.2E-05 38.7 3.9 34 7-40 26-64 (196)
48 2o08_A BH1327 protein; putativ 71.3 3 0.0001 37.9 3.9 34 7-40 18-56 (188)
49 3ccg_A HD superfamily hydrolas 71.2 3.1 0.0001 38.0 3.9 33 8-40 20-57 (190)
50 3kh1_A Predicted metal-depende 70.2 8.8 0.0003 35.7 6.8 93 6-111 39-145 (200)
51 2cqz_A 177AA long hypothetical 68.7 4.3 0.00015 36.9 4.2 35 6-40 31-75 (177)
52 2dqb_A Deoxyguanosinetriphosph 68.7 3.5 0.00012 42.2 4.0 31 8-38 76-111 (376)
53 2k9x_A Tburm1, uncharacterized 62.8 9.5 0.00033 32.1 4.9 61 389-449 24-97 (110)
54 3mzo_A LIN2634 protein; HD-dom 60.5 13 0.00046 34.9 6.1 96 6-113 29-144 (216)
55 4dmb_A HD domain-containing pr 59.1 37 0.0013 31.6 8.8 93 5-113 43-149 (204)
56 2k6p_A Uncharacterized protein 58.6 5.2 0.00018 32.0 2.5 25 424-449 27-51 (92)
57 2ibn_A Inositol oxygenase; red 58.5 6.5 0.00022 37.7 3.5 33 6-38 58-91 (250)
58 2hek_A Hypothetical protein; p 57.8 6.3 0.00021 40.2 3.5 35 6-40 49-89 (371)
59 1p9k_A ORF, hypothetical prote 48.5 7.7 0.00026 30.2 1.9 25 424-448 47-71 (79)
60 2gz4_A Hypothetical protein AT 45.9 16 0.00056 34.1 4.0 35 6-40 54-90 (207)
61 3fm8_A Kinesin-like protein KI 45.8 7.9 0.00027 33.2 1.7 24 424-448 91-114 (124)
62 1xx7_A Oxetanocin-like protein 44.9 19 0.00065 32.9 4.2 35 6-40 36-80 (184)
63 3u7z_A Putative metal binding 44.4 21 0.00073 29.6 4.0 55 389-448 24-96 (101)
64 1dm9_A Hypothetical 15.5 KD pr 42.8 12 0.00041 32.4 2.4 23 425-448 36-58 (133)
65 2q14_A Phosphohydrolase; BT420 41.8 9.1 0.00031 39.6 1.7 32 7-38 55-99 (410)
66 4a5p_A Protein MXIA, protein V 41.0 84 0.0029 32.1 8.7 193 24-233 173-380 (383)
67 4ejq_A Kinesin-like protein KI 40.4 11 0.00039 33.3 1.9 24 424-448 111-134 (154)
68 3thf_A Protein shroom; coiled- 40.2 1.4E+02 0.0048 27.4 9.1 102 50-172 46-156 (190)
69 3irh_A HD domain protein; phos 39.0 11 0.00037 39.9 1.7 31 8-38 87-137 (480)
70 1ynb_A Hypothetical protein AF 37.6 29 0.001 31.5 4.2 35 6-40 37-79 (173)
71 3a5i_A Flagellar biosynthesis 37.3 90 0.0031 31.9 8.2 182 25-233 180-383 (389)
72 1wln_A Afadin; beta sandwich, 36.6 15 0.00051 30.9 1.9 24 424-448 81-104 (120)
73 3tm8_A BD1817, uncharacterized 36.5 27 0.00094 34.5 4.2 34 5-38 163-206 (328)
74 3u1n_A SAM domain and HD domai 35.8 13 0.00044 39.7 1.7 31 8-38 66-111 (528)
75 3gqs_A Adenylate cyclase-like 33.9 14 0.00047 30.3 1.3 24 424-448 70-93 (106)
76 1lgp_A Cell cycle checkpoint p 31.0 30 0.001 28.6 2.9 26 424-449 69-95 (116)
77 1c05_A Ribosomal protein S4 de 30.9 25 0.00086 31.3 2.6 25 425-449 78-102 (159)
78 3bg2_A DGTP triphosphohydrolas 30.7 18 0.0006 37.9 1.7 30 9-38 66-119 (444)
79 4i1u_A Dephospho-COA kinase; s 30.7 27 0.00091 32.6 2.8 39 14-56 24-65 (210)
80 3po8_A RV0020C protein, putati 28.6 21 0.00073 28.7 1.5 23 424-448 66-88 (100)
81 3c8y_A Iron hydrogenase 1; dit 27.7 1.1E+02 0.0036 32.8 7.3 76 388-467 9-90 (574)
82 2vqe_D 30S ribosomal protein S 26.7 30 0.001 32.2 2.4 25 425-449 126-150 (209)
83 4h87_A Kanadaptin; FHA domain 26.6 33 0.0011 29.4 2.4 24 423-447 94-119 (130)
84 3r8n_D 30S ribosomal protein S 25.0 20 0.00068 33.5 0.8 25 425-449 122-146 (205)
85 3kt9_A Aprataxin; FHA domain, 24.9 27 0.00091 29.0 1.5 25 425-449 66-91 (102)
86 3bbn_D Ribosomal protein S4; s 24.3 31 0.001 32.1 1.9 25 425-449 116-140 (201)
87 2pgs_A Putative deoxyguanosine 24.1 27 0.00093 36.5 1.7 30 9-38 64-112 (451)
88 1uht_A Expressed protein; FHA 23.9 29 0.00098 28.8 1.5 24 424-448 77-102 (118)
89 4egx_A Kinesin-like protein KI 23.2 33 0.0011 31.3 1.9 23 425-448 142-164 (184)
90 3hx1_A SLR1951 protein; P74513 22.8 22 0.00077 30.4 0.7 24 423-448 82-105 (131)
91 1sif_A Ubiquitin; hydrophobic 22.3 90 0.0031 24.2 4.1 67 376-450 11-81 (88)
92 3va4_A Mediator of DNA damage 21.9 39 0.0013 29.0 2.0 25 424-448 90-117 (132)
93 1r21_A Antigen KI-67; beta san 21.7 26 0.00091 29.5 0.9 25 423-448 75-99 (128)
94 2jqj_A DNA damage response pro 21.1 31 0.0011 30.1 1.2 24 424-448 88-112 (151)
95 1vqr_A Hypothetical protein CJ 20.9 53 0.0018 31.6 3.0 31 8-38 125-161 (297)
96 1v1c_A Obscurin; muscle, sarco 20.9 44 0.0015 26.0 1.9 15 435-449 22-36 (71)
97 1g6g_A Protein kinase RAD53; b 20.7 43 0.0015 28.2 2.0 26 424-449 80-106 (127)
98 2xt9_B Putative signal transdu 20.5 33 0.0011 28.4 1.2 24 423-448 73-96 (115)
99 2pie_A E3 ubiquitin-protein li 20.2 42 0.0014 28.8 1.9 26 423-449 75-102 (138)
100 1gxc_A CHK2, CDS1, serine/thre 20.0 32 0.0011 30.0 1.1 26 424-449 104-130 (149)
No 1
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=100.00 E-value=3.3e-102 Score=807.43 Aligned_cols=330 Identities=40% Similarity=0.650 Sum_probs=279.7
Q ss_pred CCCCCcchhHHHHHHHHHHHHcCCCHHHHHHHhhhccccccCCCHHHHHhHhhHHHHHHHHHhccccccchHHhhccccc
Q 011341 1 MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTAS 80 (488)
Q Consensus 1 ~r~sG~Pyi~H~l~VA~iLa~lg~D~~~i~AALLHDvvEDt~~t~eel~~~FG~~Va~lV~~vTk~~~~~~~~r~~~~~~ 80 (488)
+|++|+|||.||++||.||+++|+|.++++||||||++|||++|.++|++.||++|+.||+||||++.++... .
T Consensus 43 ~rksGePYi~Hpl~VA~iLa~l~~D~~~i~AALLHDvvEDt~~t~e~I~~~FG~~Va~lV~gvTk~~~~~~~~------~ 116 (393)
T 1vj7_A 43 VRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTDITLDNIEFDFGKDVRDIVDGVTKLGKVEYKS------H 116 (393)
T ss_dssp BCTTSCBTTHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHSSCCHHHHHHHHCHHHHHHHHHHHHHC-------------
T ss_pred cCCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHhhhHHhcCCCCHHHHHHHhCHHHHHHHHHHHhcccCCccc------H
Confidence 4789999999999999999999999999999999999999999999999999999999999999999886421 2
Q ss_pred chHHHHHHHHHHhhcC-CchhhHHHHhhHHhhhccccCCChHHHHHHHHHHHHHhhhhhcccChhhHHHHHHhhhhhccC
Q 011341 81 KTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLN 159 (488)
Q Consensus 81 ~~~~~e~lRkmlla~~-D~rvvlIKLADRLhNmrtl~~~~~~k~~~~A~Etl~iyaPLA~rLGi~~ik~ELedl~f~~l~ 159 (488)
...|++++||||+||+ |+||++|||||||||||++..+|+++|+++|+||++|||||||||||++||||||||||+||+
T Consensus 117 ~~~qae~~Rkmllam~~D~RvvlIKLADRlhNmRtl~~~~~ek~~~iA~Etl~iyaPLA~rLGi~~ik~ELEdl~f~~l~ 196 (393)
T 1vj7_A 117 EEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLN 196 (393)
T ss_dssp -------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC------HHHHHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeHHHHHHccCchhhCChHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhcccc
Confidence 3457999999999997 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHhcCCceeeeeccccChHHHHHHHhhcCCCCCCCCcceEEEEEeCCh
Q 011341 160 PDQHTELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENE 237 (488)
Q Consensus 160 p~~y~~i~~~l~~~~--~~~~i~~~~~~l~~~L~~~gi~~~~v~~R~K~~~Si~~K~~rk~~~~~~i~Dl~giRIiv~~~ 237 (488)
|+.|+.|.+.|.+.. ++.+++.+.+.|++.|.+.||.+. |+||+|++||||+||++|+.+|++|+|++|+||||++.
T Consensus 197 p~~y~~i~~~l~~~r~~r~~~i~~i~~~l~~~L~~~gi~~~-v~~R~K~~~Si~~Km~rk~~~~~~i~Di~giRIi~~~~ 275 (393)
T 1vj7_A 197 ETEFYKISHMMNEKRREREALVDDIVTKIKSYTTEQGLFGD-VYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMETQ 275 (393)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCCCE-EEECCCCHHHHHHHHHHHGGGCCTTGGGCEEEEEESSH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE-EEEEeCChHHHHHHHHHhCCChhhhcccceEEEEECCH
Confidence 999999999998864 788999999999999999999985 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCcccCcccCCCCCCccceeEEEEcCCeeeEEEEEeehhhhHHHHhhhhhhcccccCCCCc--
Q 011341 238 EDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQH-- 315 (488)
Q Consensus 238 ~dcy~vl~~i~~~~~~~~~~~kDyI~~PK~nGYqSlH~~v~~~~g~~~EIQIRT~~mh~~Ae~g~aah~~YK~~~~~~-- 315 (488)
+|||.++|+||+.|+|+|++|||||++||+||||||||+|.+|.| ++||||||..||.|||+||++||+||++....
T Consensus 276 ~dcy~vl~~i~~~~~~~~~~~kDyIa~PK~nGYqSlH~~v~~p~~-~vEIQIRT~~mh~~Ae~g~aah~~YK~~~~~~~~ 354 (393)
T 1vj7_A 276 SDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPKG-PIEIQIRTKEMHQVAEYGVAAHWAYKKGVRGKVN 354 (393)
T ss_dssp HHHHHHHHHHHHHSCBCTTCCEETTTSCCTTCCCCEEEEEECSSS-EEEEEEEEHHHHHHHHHTTCC-------------
T ss_pred HHHHHHHHHHHhcCCCCCCcccccccCCCcCCcceeEEEEEeCCc-eEEEEEecHHHHHHHHhhHHHHhccccCCCcccc
Confidence 999999999999999999999999999999999999999999999 99999999999999999999999999874321
Q ss_pred chhHHHHHHHHHHHHHHHHHhcc
Q 011341 316 SSFVLQMVEWARWVLTWQCEAMS 338 (488)
Q Consensus 316 ~~~~~~~~~wl~~l~e~~~~~~~ 338 (488)
.....++++||++|++||++..+
T Consensus 355 ~~~~~~~~~wl~~ll~~~~~~~~ 377 (393)
T 1vj7_A 355 QAEQKVGMNWIKELVELQDASNG 377 (393)
T ss_dssp --------CHHHHHHHC------
T ss_pred hhhhHHHHHHHHHHHHHHhcCCC
Confidence 12234578999999999988766
No 2
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans}
Probab=100.00 E-value=5.3e-46 Score=364.99 Aligned_cols=191 Identities=22% Similarity=0.304 Sum_probs=142.8
Q ss_pred HHhhhhhcccChhhHHHHHHhhhhhccCcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCceeeeeccccChHHHH
Q 011341 132 EIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIH 211 (488)
Q Consensus 132 ~iyaPLA~rLGi~~ik~ELedl~f~~l~p~~y~~i~~~l~~~~~~~~i~~~~~~l~~~L~~~gi~~~~v~~R~K~~~Si~ 211 (488)
.||||||+||||..+|.|++++.+.|. ..+.+++.+| +.+...+...+..+.|. .|++|+|+++||+
T Consensus 19 ~i~apla~~lg~~~~~~~~~~~~~~Y~--~a~~el~~kl---------~~l~~e~~~~~~~~~i~--~V~~RvKs~~SI~ 85 (255)
T 3l9d_A 19 SHMASMTGGQQMGRGSMNWEEFLDPYI--QAVGELKIKF---------RGIRKQFRKQKRHSPIE--FVTGRVKPIESIK 85 (255)
T ss_dssp ----------------CCHHHHTHHHH--HHHHHHHHHH---------HHHHHHHHHTTSCCSCC--EEEEEECCHHHHH
T ss_pred cchHhhhhHhhHHHHHHHHHHHHHHHH--HHHHHHHHHH---------HHHHHHHHHhhccCCcc--eEEeEEcCHHHHH
Confidence 699999999999999999999988755 3555555444 22333333334444554 6999999999999
Q ss_pred HHHhhcCCCCC----CCCcceEEEEEeCChHHHHHHHHHHHhhccCCCCcccCcccCCCCCCccceeEEEE-------cC
Q 011341 212 CKMLKKKLTMD----EIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVT-------GE 280 (488)
Q Consensus 212 ~K~~rk~~~~~----~i~Dl~giRIiv~~~~dcy~vl~~i~~~~~~~~~~~kDyI~~PK~nGYqSlH~~v~-------~~ 280 (488)
+||.|++.+++ +|+|++|+||||.+.+|||.++++||+.|+|.|.++||||++||+|||||||++|. ++
T Consensus 86 ~Km~Rk~~~~~~~~~~I~Di~GiRII~~~~~D~y~v~~~I~~~~~~~~~~~KDYIa~PK~nGYrSlH~iv~~p~~~~~g~ 165 (255)
T 3l9d_A 86 EKMVLRGIKKENLTQDMQDIAGLRIMVQFVDDVNDVLELLRQRKDMKVIQERDYINNLKPSGYRSYHVIVEYPVDTISGQ 165 (255)
T ss_dssp HHHHHHTCCGGGHHHHCSCSEEEEEEESSTTHHHHHHHHHHTCSSSEEEEEEEESCC-CCCSCCEEEEEEEEEEEETTEE
T ss_pred HHHHhcCCCccchhhhccccceEEEEEeCHHHHHHHHHHHHhcCCCceeeeeccccCCCCCCceeEEEEEEcccccccCC
Confidence 99999999886 79999999999999999999999999999999999999999999999999999998 56
Q ss_pred CeeeEEEEEeehhhhHHHHhhhhhhcccccCCCCcchhHHHHHHHHHHHHHHHHHhcc
Q 011341 281 GLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMS 338 (488)
Q Consensus 281 ~g~~~EIQIRT~~mh~~Ae~g~aah~~YK~~~~~~~~~~~~~~~wl~~l~e~~~~~~~ 338 (488)
.|.+|||||||.+||.|||+||+.+|+|+...+ ....+++.-++.+++..++.+.
T Consensus 166 ~~~~vEIQIRT~~Mh~WAeieH~~~YK~~~~~p---~~i~r~L~~~A~~l~~~D~~m~ 220 (255)
T 3l9d_A 166 RIIMAEIQIRTLAMNFWATIEHSLNYKYHGEFP---EDIKRRLELTSKIAFQLDEEMR 220 (255)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCC---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEECCHHHHHHHHHHHHHhcCCCCCCc---HHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999997543 3456667777776666555443
No 3
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8
Probab=100.00 E-value=4.5e-40 Score=319.14 Aligned_cols=153 Identities=24% Similarity=0.309 Sum_probs=131.7
Q ss_pred eeeeeccccChHHHHHHHhhcCCCCC----CCCcceEEEEEeCChHHHHHHHHHHHhhccCCCCcccCcccCCCCCCccc
Q 011341 197 FLVLCGRHKSLYSIHCKMLKKKLTMD----EIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQS 272 (488)
Q Consensus 197 ~~~v~~R~K~~~Si~~K~~rk~~~~~----~i~Dl~giRIiv~~~~dcy~vl~~i~~~~~~~~~~~kDyI~~PK~nGYqS 272 (488)
++.|++|+|+++||++||.||+.+++ +|+|++|+||||++.+|||.++++||+.|+|.|.++||||++||+|||||
T Consensus 42 i~~v~~RvK~~~Si~~K~~rk~~~~~~~~~~i~Di~GiRIi~~~~~d~y~v~~~i~~~~~~~~~~~kDyI~~PK~nGYrS 121 (226)
T 2be3_A 42 IEFVTGRVKPIESIKEKMARRGITYATLEHDLQDIAGLRVMVQFVDDVKEVVDILHKRQDMRIIQERDYITHRKASGYRS 121 (226)
T ss_dssp EEEEEEEECCHHHHHHHHHHHTCCTTTHHHHCTTSEEEEEEESCGGGHHHHHHHHHTCSSEEEEEEEETTTTCCTTSCCC
T ss_pred cceEEeeCCCHHHHHHHHHhhCCCcccchhhccccceEEEEEcCHHHHHHHHHHHHhccCCceeeecchhhcCCCCCceE
Confidence 34699999999999999999999988 89999999999999999999999999999999999999999999999999
Q ss_pred eeEEEE-------cCCeeeEEEEEeehhhhHHHHhhhhhhcccccCCCCcc-h----hHHHHHHHHHHHHHHHHHhcccC
Q 011341 273 LHTVVT-------GEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHS-S----FVLQMVEWARWVLTWQCEAMSKD 340 (488)
Q Consensus 273 lH~~v~-------~~~g~~~EIQIRT~~mh~~Ae~g~aah~~YK~~~~~~~-~----~~~~~~~wl~~l~e~~~~~~~~~ 340 (488)
||++|. ++.|.++||||||..||.|||+||++||+|+++.+..- . .......|.+++.+|++++.+
T Consensus 122 lH~~v~~p~~~~~g~~~~~vEIQIRT~~m~~wAe~eh~~~YK~~~~~~~~~~~~l~~~a~~~~~~d~~m~~i~~~i~~-- 199 (226)
T 2be3_A 122 YHVVVEYTVDTINGAKTILAEIQIRTLAMNFWATIEHSLNYKYQGDFPDEIKKRLEITARIAHQLDEEMGEIRDDIQE-- 199 (226)
T ss_dssp EEEEEEEEECCTTCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH--
T ss_pred EEEEEEcccccccCCCCcEEEEEEeeHHHHHHHHHhHHHHcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 999997 66789999999999999999999999999998654210 0 112346799999999998876
Q ss_pred CCCCccCCCCCCC
Q 011341 341 RSCVGNGDSIKPP 353 (488)
Q Consensus 341 ~~~~~~~~~~~~~ 353 (488)
+.+|.+.++.+
T Consensus 200 --~~~~~~~~~~~ 210 (226)
T 2be3_A 200 --AQALFDPLSRK 210 (226)
T ss_dssp --HHHHCCC----
T ss_pred --hHHHHHHhhHH
Confidence 56777777765
No 4
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=99.97 E-value=8.9e-31 Score=245.56 Aligned_cols=143 Identities=25% Similarity=0.378 Sum_probs=118.4
Q ss_pred CCcchhHHHHHHHHHHH-HcCC-CHHHHHHHhhhccccccCCCHHHHHhHhhHHHHHHHHHhccccccchHHhhcccccc
Q 011341 4 SGDPYLLHCVETAMLLA-AIGA-NSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASK 81 (488)
Q Consensus 4 sG~Pyi~H~l~VA~iLa-~lg~-D~~~i~AALLHDvvEDt~~t~eel~~~FG~~Va~lV~~vTk~~~~~~~~r~~~~~~~ 81 (488)
+|+|||.||++||.||+ ++|+ |.++++||||||++|||.+|.++|++.||++|+.+|+||||++.+++..+ +
T Consensus 29 ~G~pyi~Hpl~VA~ila~~l~~~D~~~i~AAlLHDvvEDt~~t~e~i~~~FG~~Va~lV~gvtk~~~~~~~~~------~ 102 (179)
T 3nqw_A 29 QETPYVNHVINVSTILSVEACITDEGVLMAALLHDVVEDTDASFEDVEKLFGPDVCGLVREVTDDKSLEKQER------K 102 (179)
T ss_dssp SCCBTHHHHHHHHHHHHTTTCCCCHHHHHHHHTTTHHHHSSCCHHHHHHHHCHHHHHHHHHTCCCTTSCHHHH------H
T ss_pred CCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHhcCCCCHHHHHHHHCHHHHHHHHHHHhccccCHHHH------H
Confidence 69999999999999999 8998 99999999999999999999999999999999999999999998875432 2
Q ss_pred hHHHHHHHHHHhhcCCchhhHHHHhhHHhhhccccCCChHHH-HHHHHHHHHHhhhhhccc--ChhhHHHHHHhhhhhc
Q 011341 82 TVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKR-QRFAKETLEIFVPLANRL--GISTWKVQLENLCFKH 157 (488)
Q Consensus 82 ~~~~e~lRkmlla~~D~rvvlIKLADRLhNmrtl~~~~~~k~-~~~A~Etl~iyaPLA~rL--Gi~~ik~ELedl~f~~ 157 (488)
..|.+++|+ .|+||++||||||+||||++...|++.+ ..-+++....|.++++.| +=..+..+|.+++-+|
T Consensus 103 ~~q~e~~r~-----~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~r~~~Y~~~~~~v~~~l~~~n~~l~~~~~~~~~~~ 176 (179)
T 3nqw_A 103 RLQIENAAK-----SSCRAKLIKLADKLDNLRDLQVNTPTGWTQERRDQYFVWAKKVVDNLRGTNANLELKLDEIFRQR 176 (179)
T ss_dssp HHHHHSSTT-----SCHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Confidence 346777764 6999999999999999999988776643 233455666667777777 4446777777766544
No 5
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=99.96 E-value=4.3e-29 Score=233.89 Aligned_cols=125 Identities=33% Similarity=0.454 Sum_probs=104.8
Q ss_pred CCC--CcchhHHHHHHHHHH-HHcCC-CHHHHHHHhhhccccccCCCHHHHHhHhhHHHHHHHHHhccccccchHHhhcc
Q 011341 2 RAS--GDPYLLHCVETAMLL-AAIGA-NSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENN 77 (488)
Q Consensus 2 r~s--G~Pyi~H~l~VA~iL-a~lg~-D~~~i~AALLHDvvEDt~~t~eel~~~FG~~Va~lV~~vTk~~~~~~~~r~~~ 77 (488)
|++ |+|||.||++||.|| .++|+ |.++++||||||++|||++|.++|++.||++|+.+|+||||++.+++..+
T Consensus 23 rk~~~G~PYi~Hpl~VA~il~~~~~~~d~~~i~AALLHDvvEDt~~t~e~i~~~FG~~Va~lV~gvTk~~~~~~~~~--- 99 (178)
T 3nr1_A 23 RKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDTDTTLDEVELHFGAQVRRLVEEVTDDKTLPKLER--- 99 (178)
T ss_dssp CSSTTCCBTTHHHHHHHHHHHHTSCCCCHHHHHHHHHTTHHHHSSCCHHHHHHHHHHHHHHHHHHTCCCTTSCHHHH---
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHhcCCCCHHHHHHHHCHHHHHHHHHHHhccccchhhH---
Confidence 555 999999999999999 58996 99999999999999999999999999999999999999999998875432
Q ss_pred cccchHHHHHHHHHHhhcCCchhhHHHHhhHHhhhccccCCChH-----HHHHHHHHHHHHhhhh
Q 011341 78 TASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLC-----KRQRFAKETLEIFVPL 137 (488)
Q Consensus 78 ~~~~~~~~e~lRkmlla~~D~rvvlIKLADRLhNmrtl~~~~~~-----k~~~~A~Etl~iyaPL 137 (488)
+..|.+++| ..|+||++||||||+||||++...+++ +..+|..|...|..-|
T Consensus 100 ---~~~q~e~~~-----~~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~r~~~Y~~~~~~v~~~l 156 (178)
T 3nr1_A 100 ---KRLQVEQAP-----HSSPGAKLVKLADKLYNLRDLNRCTPEGWSEHRVQEYFEWAAQVVKGL 156 (178)
T ss_dssp ---HHHHHHHGG-----GSCHHHHHHHHHHHHHHHHHHHHCCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHH-----hCCchhHHHHHHHHHHHHHHhhhCCccccCHHHHHHHHHHHHHHHHHh
Confidence 234666654 259999999999999999998766554 4566777776665444
No 6
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=99.72 E-value=6.6e-19 Score=143.03 Aligned_cols=65 Identities=18% Similarity=0.361 Sum_probs=58.9
Q ss_pred CCCCcccCCCCCCCCCEEEEEEeCCcceEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccC
Q 011341 361 DDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLK 440 (488)
Q Consensus 361 ~~~i~vftp~~~~~~~i~v~~~~~~~~~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~ 440 (488)
+++||||||+| ++++||+||||+||||+||++++ +.|++|+|||++| +++++|+
T Consensus 5 ~~~i~v~tP~G----------------~~~~lp~GaT~~D~A~~Ih~~lg---------~~~v~AkVNG~~v-~L~~~L~ 58 (78)
T 3hvz_A 5 PEEVFVFTPKG----------------DVISLPIGSTVIDFAYAIHSAVG---------NRMIGAKVDGRIV-PIDYKVK 58 (78)
T ss_dssp -CEEEEECTTS----------------CEEEEETTCBHHHHHHHHCHHHH---------HTEEEEEETTEEE-CTTCBCC
T ss_pred CceEEEECCCC----------------CEEEecCCCCHHHHHHHhhhhhh---------cceEEEEECCEEc-CCCcccC
Confidence 47899999996 69999999999999999999864 5799999999999 5999999
Q ss_pred CCCEEEEeeCC
Q 011341 441 MGDVVELTPAI 451 (488)
Q Consensus 441 ~GD~VeIi~~~ 451 (488)
+||+|||+|..
T Consensus 59 ~gd~VeIit~~ 69 (78)
T 3hvz_A 59 TGEIIDVLTTK 69 (78)
T ss_dssp TTCBEEEEECC
T ss_pred CCCEEEEEccC
Confidence 99999999954
No 7
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=99.38 E-value=2.8e-13 Score=112.58 Aligned_cols=72 Identities=18% Similarity=0.152 Sum_probs=58.4
Q ss_pred CCCcccC-CCCCCCCCEEEEEEeCCcceEEec-CCCCcHHHHHHHhcCCCCCCCCCCCCCcccc----ccccCCcccCCC
Q 011341 362 DCPFSYK-PQCSHDGPVFVIMIENDKMSVQEF-PTSSTVMDLLERAGRGSSRWSPYGFPLKEEL----RPRLNHKAVGDP 435 (488)
Q Consensus 362 ~~i~vft-p~~~~~~~i~v~~~~~~~~~~~~l-p~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v----~akvN~~~v~~l 435 (488)
+-|.||| |+|.. |+-+ +++.| |+||||.||||+||++++ +.|+.|+ +||.|++.| ++
T Consensus 10 ~lIrVYtk~~G~~--------pd~~--dpviL~~~GsTv~Dfa~~IH~di~------~~fkyA~VwG~saK~~~qrV-gl 72 (93)
T 2eki_A 10 KLVRIYTKPKGQL--------PDYT--SPVVLPYSRTTVEDFCMKIHKNLI------KEFKYALVWGLSVKHNPQKV-GK 72 (93)
T ss_dssp CEEEEEECCTTSC--------CCSS--SCEEEETTSCCHHHHHHHHCTTCT------TTEEEEEEBSTTSSSSSEEE-CS
T ss_pred CeEEEEeCCCCCC--------CCCC--CCEEEecCCCCHHHHHHHHHHHHH------hhccEEEEecccccCCCEEC-CC
Confidence 4588999 77631 1112 57889 999999999999999974 5566666 689999999 59
Q ss_pred CCccCCCCEEEEeeC
Q 011341 436 RCKLKMGDVVELTPA 450 (488)
Q Consensus 436 ~~~L~~GD~VeIi~~ 450 (488)
+|+|++||+|+|++.
T Consensus 73 dh~L~d~DVV~Iv~~ 87 (93)
T 2eki_A 73 DHTLEDEDVIQIVKK 87 (93)
T ss_dssp SCCCCSSEEECEEEC
T ss_pred CcEecCCCEEEEEeC
Confidence 999999999999984
No 8
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=98.92 E-value=5.1e-10 Score=88.62 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=47.4
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEeeCC
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAI 451 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~~~ 451 (488)
+.+++|+|+|+.|||+.++.+.+ ..+++|+|||+++ +++++|++||.|||++..
T Consensus 11 ~~~~~~~g~T~~dla~~i~~~l~---------~~~vaa~vNg~lv-dl~~~L~~~~~Veivt~~ 64 (73)
T 2kmm_A 11 EIKRLPQGATALDFAYSLHSDLG---------DHCIGAKVNHKLV-PLSYVLNSGDQVEVLSSK 64 (73)
T ss_dssp CEEEECTTCBHHHHHHHHCSHHH---------HTEEEEEETTEEC-CTTCBCCSSSBEEEEECC
T ss_pred CEEEcCCCCcHHHHHHHHhhccc---------cceEEEEECCEEe-CCCcCcCCCCEEEEEECC
Confidence 58999999999999999976532 4578999999999 599999999999999854
No 9
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=98.88 E-value=4.7e-10 Score=108.05 Aligned_cols=79 Identities=18% Similarity=0.270 Sum_probs=67.5
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEeeCCCCccHH--------HH
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLT--------EY 459 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~~~~~~~~~--------~~ 459 (488)
.++++|+|+|+.|||+.+|++.+ +.+++|+|||+++ +|+++|++|+.||++|.....+.. .+
T Consensus 10 ~~~~~~~g~T~~dia~~i~~~l~---------~~~vaakvNg~l~-dL~~~l~~~~~ve~it~~~~~g~~~~~HS~~HlL 79 (224)
T 1tke_A 10 SQRHYDHAVSPMDVALDIGPGLA---------KACIAGRVNGELV-DACDLIENDAQLSIITAKDEEGLEIIRHSCAHLL 79 (224)
T ss_dssp CEEECSSCBCHHHHHHHHCHHHH---------HHCCEEEETTEEE-ETTCCBCSCEEEEEECTTSHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCHHHHHHHHhhhcc---------cceEEEEECCEEe-ccceEcCCCCeEEEEecCchhHHHHHHHHHHHHH
Confidence 58999999999999999987643 5789999999999 599999999999999977655544 45
Q ss_pred HHHHHHHhhhc-cccCCC
Q 011341 460 REEIQRMYERG-LAVSNT 476 (488)
Q Consensus 460 ~~~i~~~~~~~-~~~~~~ 476 (488)
..+++++|+.+ +++||+
T Consensus 80 ~~A~~~~~~~~~~~~g~~ 97 (224)
T 1tke_A 80 GHAIKQLWPHTKMAIGPV 97 (224)
T ss_dssp HHHHHHHSTTCEECCCCE
T ss_pred HHHHHHHCCCcEEEECCc
Confidence 89999999877 888754
No 10
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=98.85 E-value=6.9e-10 Score=91.45 Aligned_cols=65 Identities=12% Similarity=0.119 Sum_probs=54.2
Q ss_pred EEEEeCCcceEEecCC-CCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEeeCCCCccH
Q 011341 379 VIMIENDKMSVQEFPT-SSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSL 456 (488)
Q Consensus 379 v~~~~~~~~~~~~lp~-GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~~~~~~~~ 456 (488)
|.+|+| .++++|. |+|+.|||+.+|++++ +.+++|+|||+++ +|+++|++|+.|||+|.....++
T Consensus 14 I~lpdG---~~~~~~~~~~T~~dia~~i~~~l~---------~~~vaakvNg~l~-dL~~~l~~d~~ve~vt~~~~eg~ 79 (88)
T 1wwt_A 14 VTLPDG---KQVDAESWKTTPYQIACGISQGLA---------DNTVIAKVNNVVW-DLDRPLEEDCTLELLKFEDEEAQ 79 (88)
T ss_dssp EECTTS---CEEEEETTTCCHHHHHHHSSTTTG---------GGCCCEEESSSEE-CSSSCCCSSEEEEECSSCCSCCS
T ss_pred EEECCC---CEEEcccCCCCHHHHHHHhhhccc---------cceEEEEECCEEE-CCCcCcCCCCEEEEEeCCCHHHh
Confidence 444445 5889998 9999999999988753 5789999999999 59999999999999996655554
No 11
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.63 E-value=7.7e-09 Score=107.81 Aligned_cols=53 Identities=21% Similarity=0.201 Sum_probs=46.7
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCcccccc--ccCCcccCCCCCccCCCCEEEEeeC
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRP--RLNHKAVGDPRCKLKMGDVVELTPA 450 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~a--kvN~~~v~~l~~~L~~GD~VeIi~~ 450 (488)
++..||+|+||.||||.||++++ +.+++| ++|++.| +++|+|++||+|+|++.
T Consensus 341 ~~~~l~~G~t~~d~a~~iH~d~~---------~~f~~a~~~~~~~~~-g~~~~l~dgDvv~i~~~ 395 (397)
T 1wxq_A 341 HVFLMKKGSTPRDLAFKVHTDLG---------KGFLYAINARTKRRV-GEDYELQFNDIVKIVSV 395 (397)
T ss_dssp CCEEEETTCCHHHHHHHHCHHHH---------HTEEEEEETTTCSBC-CTTCCCCTTEEEEEEEC
T ss_pred eeEEeCCCCCHHHHHHHHhHHHH---------hhhhhhHHhcCCEEc-CCCccccCCCEEEEEeC
Confidence 57889999999999999999974 345666 7799999 59999999999999985
No 12
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=97.54 E-value=2.2e-05 Score=86.60 Aligned_cols=85 Identities=16% Similarity=0.274 Sum_probs=69.3
Q ss_pred EEEEeCCcceEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEeeCCCCccHH-
Q 011341 379 VIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLT- 457 (488)
Q Consensus 379 v~~~~~~~~~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~~~~~~~~~- 457 (488)
|.+|+| .+++++.|.||.|+|-.|+..+. ..+++|+|||+++ +++++|..+..|+++|..+..+..
T Consensus 4 ~~~~d~---~~~~~~~~~t~~~~a~~i~~~~~---------~~~~~~~vng~~~-dl~~~l~~d~~~~~~~~~~~~~~~~ 70 (642)
T 1qf6_A 4 ITLPDG---SQRHYDHAVSPMDVALDIGPGLA---------KACIAGRVNGELV-DACDLIENDAQLSIITAKDEEGLEI 70 (642)
T ss_dssp EECTTS---CEEECSSCBCHHHHHHHHCHHHH---------HHCSEEEETTEEE-ETTSCBCSCEECCEECTTSHHHHHH
T ss_pred EEcCCC---CeEEecCCCCHHHHHHHhchhhh---------hheEEEEECCEEe-ccccccCCCceEEEeecCcHHHHHH
Confidence 455666 57999999999999999965432 5678999999999 699999999999999977655544
Q ss_pred -------HHHHHHHHHhhhc-cccCCC
Q 011341 458 -------EYREEIQRMYERG-LAVSNT 476 (488)
Q Consensus 458 -------~~~~~i~~~~~~~-~~~~~~ 476 (488)
.+..+++++|+.+ +++||.
T Consensus 71 ~~HSa~HlL~~Al~~~~~~~~~~~G~~ 97 (642)
T 1qf6_A 71 IRHSCAHLLGHAIKQLWPHTKMAIGPV 97 (642)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEECCCCE
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEECCc
Confidence 4699999999887 776653
No 13
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=97.23 E-value=0.00025 Score=54.87 Aligned_cols=52 Identities=21% Similarity=0.265 Sum_probs=42.3
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCC----CCccCCCCEEEEeeCC
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDP----RCKLKMGDVVELTPAI 451 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l----~~~L~~GD~VeIi~~~ 451 (488)
..+++|.|+|+.|+.-.++.. ...+.+-+||+++| . ++.|++||.|+|++..
T Consensus 8 ~~~~~~~~~tv~~ll~~l~~~-----------~~~v~vavN~~~v~-~~~~~~~~L~~gD~v~i~~~V 63 (66)
T 1f0z_A 8 QAMQCAAGQTVHELLEQLDQR-----------QAGAALAINQQIVP-REQWAQHIVQDGDQILLFQVI 63 (66)
T ss_dssp CEECCCTTCCHHHHHHHHTCC-----------CSSEEEEETTEEEC-HHHHTTCCCCTTEEECEEESC
T ss_pred EEEEcCCCCcHHHHHHHcCCC-----------CCCEEEEECCEECC-chhcCCcCCCCCCEEEEEeec
Confidence 478999999999998877433 13456889999995 5 7999999999999843
No 14
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=97.22 E-value=0.0004 Score=57.06 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=41.5
Q ss_pred eEEecCCC-CcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCC----CCccCCCCEEEEeeC
Q 011341 388 SVQEFPTS-STVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDP----RCKLKMGDVVELTPA 450 (488)
Q Consensus 388 ~~~~lp~G-sT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l----~~~L~~GD~VeIi~~ 450 (488)
+.+++|.| +|+.|+.-.++.. ...+.+-|||++|| . ++.|++||.|||++.
T Consensus 28 e~~el~~~~~Tv~dLL~~L~~~-----------~~~vaVavNg~iV~-~~~~~~~~L~dGD~Vei~~~ 83 (87)
T 1tyg_B 28 KDVKWKKDTGTIQDLLASYQLE-----------NKIVIVERNKEIIG-KERYHEVELCDRDVIEIVHF 83 (87)
T ss_dssp EEECCSSSCCBHHHHHHHTTCT-----------TSCCEEEETTEEEC-GGGTTTSBCCSSSEEEEEEE
T ss_pred EEEECCCCCCcHHHHHHHhCCC-----------CCCEEEEECCEECC-hhhcCCcCCCCCCEEEEEcc
Confidence 58899998 9999998877432 13456889999995 4 689999999999974
No 15
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=97.20 E-value=0.0003 Score=58.98 Aligned_cols=52 Identities=15% Similarity=0.128 Sum_probs=40.2
Q ss_pred eEEecCCCCcHHHHHHHhcC-----CCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEee
Q 011341 388 SVQEFPTSSTVMDLLERAGR-----GSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP 449 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~-----~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~ 449 (488)
...++|.|+|+.|+.-+.+- ++. .....+-|||+.|+ +++.|++||.|||++
T Consensus 28 ~~~~v~~g~TV~daI~~~gi~~~~peId---------l~~~~V~Vng~~v~-~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 28 KSFQVDEGITVQTAITQSGILSQFPEID---------LSTNKIGIFSRPIK-LTDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEETTCBHHHHHHHHTHHHHCTTCC---------TTTSEEEEEECSCC-TTCBCCTTCEEEECC
T ss_pred EEEEcCCCCcHHHHHHHcCCCccCCccc---------ccccEEEEcCEECC-CCccCCCCCEEEEEe
Confidence 35789999999999876532 221 11234569999995 999999999999997
No 16
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=97.16 E-value=0.00066 Score=54.00 Aligned_cols=51 Identities=16% Similarity=0.142 Sum_probs=41.1
Q ss_pred EEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEeeCCC
Q 011341 389 VQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIP 452 (488)
Q Consensus 389 ~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~~~~ 452 (488)
.+++|.|+|+.|+.-.++-.. ..+.+.+||++|| .+..++ ||.|||++...
T Consensus 14 ~~ev~~g~Tv~dLL~~Lgl~~-----------~~VvV~vNG~~v~-~d~~l~-GD~VeIv~~V~ 64 (74)
T 2l32_A 14 EVAVDDDGTYADLVRAVDLSP-----------HEVTVLVDGRPVP-EDQSVE-VDRVKVLRLIK 64 (74)
T ss_dssp EEECSTTCSHHHHHHTTCCCS-----------SCCCEECCCCCCC-TTSSSC-CCCEEECSSCS
T ss_pred eEEcCCCCcHHHHHHHcCCCc-----------ceEEEEECCEECC-HHHCCC-CCEEEEEEeec
Confidence 579999999999998875432 2345889999995 888886 99999998544
No 17
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=97.14 E-value=5.7e-05 Score=83.27 Aligned_cols=79 Identities=19% Similarity=0.304 Sum_probs=65.0
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEeeCCCCccHH--------HH
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLT--------EY 459 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~~~~~~~~~--------~~ 459 (488)
.++++|.|.|+.|+|-.|..... +.+++|+|||+++ +|+++|..+..||++|..+..++. .+
T Consensus 12 ~~~~~~~g~t~~~ia~~~~~~~~---------~~~v~~~vng~~~-dl~~~l~~d~~v~~~~~~~~~g~~~~~HSa~HlL 81 (645)
T 1nyr_A 12 NKKAFDKGTTTEDIAQSISPGLR---------KKAVAGKFNGQLV-DLTKPLETDGSIEIVTPGSEEALEVLRHSTAHLM 81 (645)
T ss_dssp CCCBCCTTCCHHHHHHTTCHHHH---------HHCCEEEETTEEE-CTTSCCCSCBCCCEECTTSHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCHHHHHHHhhhhcc---------cCeEEEEECCEEE-eCCcccCCCCeEEEeeccchhHHHHHHHHHHHHH
Confidence 46899999999999988854421 4678999999999 699999999999999977655554 45
Q ss_pred HHHHHHHhhhc-cccCCC
Q 011341 460 REEIQRMYERG-LAVSNT 476 (488)
Q Consensus 460 ~~~i~~~~~~~-~~~~~~ 476 (488)
..+++++|+.. +++||.
T Consensus 82 ~~A~~~~~~~~~~~~g~~ 99 (645)
T 1nyr_A 82 AHAIKRLYGNVKFGVGPV 99 (645)
T ss_dssp HHHHHHHSSSCEECCCCE
T ss_pred HHHHHHHcCCcEEEECCc
Confidence 89999999877 887764
No 18
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=97.13 E-value=0.00044 Score=54.83 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=40.8
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCC---CCccCCCCEEEEeeC
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDP---RCKLKMGDVVELTPA 450 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l---~~~L~~GD~VeIi~~ 450 (488)
+.+++ .|+|+.|+.-..+-+ ...+++-+||++||.. ++.|++||.|||++.
T Consensus 8 ~~~e~-~~~Tl~~LL~~l~~~-----------~~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~~ 61 (73)
T 2kl0_A 8 EQREV-QSASVAALMTELDCT-----------GGHFAVALNYDVVPRGKWDETPVTAGDEIEILTP 61 (73)
T ss_dssp EEECC-CCSBHHHHHHHTTCC-----------SSSCEEEESSSEECHHHHTTCBCCTTCEEEEECC
T ss_pred EEEEc-CCCcHHHHHHHcCCC-----------CCcEEEEECCEECChHHcCcccCCCCCEEEEEcc
Confidence 57888 999999998877543 1346788999999632 589999999999984
No 19
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=97.11 E-value=0.0004 Score=55.80 Aligned_cols=56 Identities=21% Similarity=0.217 Sum_probs=43.6
Q ss_pred EEeCCcceEEecC--CCCcHHHHHHHhcCC-CCCCCCCCCCCccccccccCCcccCCC---CCccCCCCEEEEeeC
Q 011341 381 MIENDKMSVQEFP--TSSTVMDLLERAGRG-SSRWSPYGFPLKEELRPRLNHKAVGDP---RCKLKMGDVVELTPA 450 (488)
Q Consensus 381 ~~~~~~~~~~~lp--~GsT~~DfAy~i~~~-~~~~~~~g~~~~~~v~akvN~~~v~~l---~~~L~~GD~VeIi~~ 450 (488)
+.+| +.+++| .|+|+.|+.-..+-+ . ..+.+-+||++||.. ++.|++||.|||++.
T Consensus 4 ~vNG---e~~e~~~~~~~Tl~~LL~~l~~~~~-----------~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~~ 65 (78)
T 2k5p_A 4 TVNG---KPSTVDGAESLNVTELLSALKVAQA-----------EYVTVELNGEVLEREAFDATTVKDGDAVEFLYF 65 (78)
T ss_dssp EETT---EEEECSSCSCEEHHHHHHHHTCSCT-----------TTCCEEETTEECCTTHHHHCEECSSBCEEECCC
T ss_pred EECC---EEEEcCCCCCCcHHHHHHHcCCCCC-----------CcEEEEECCEECChHHcCcccCCCCCEEEEEee
Confidence 4455 588999 999999999877533 1 245688999999632 489999999999984
No 20
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=97.05 E-value=0.00077 Score=52.80 Aligned_cols=50 Identities=20% Similarity=0.175 Sum_probs=41.0
Q ss_pred EecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEeeCC
Q 011341 390 QEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAI 451 (488)
Q Consensus 390 ~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~~~ 451 (488)
+++|.|+|+.|+.-.++.. ...+.+-+||+++| .++.|++||.|+|++..
T Consensus 18 ~~~~~~~tv~~Ll~~l~~~-----------~~~v~vavN~~~v~-~~~~L~~gD~V~ii~~V 67 (70)
T 1ryj_A 18 LESGAPRRIKDVLGELEIP-----------IETVVVKKNGQIVI-DEEEIFDGDIIEVIRVI 67 (70)
T ss_dssp EEESSCCBHHHHHHHTTCC-----------TTTEEEEETTEECC-TTSBCCTTCEEEEEECT
T ss_pred EECCCCCcHHHHHHHhCCC-----------CCCEEEEECCEECC-CcccCCCCCEEEEEecc
Confidence 7899999999998876432 12345789999995 89999999999999843
No 21
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=97.01 E-value=0.00021 Score=57.07 Aligned_cols=51 Identities=29% Similarity=0.360 Sum_probs=41.7
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEeeC
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPA 450 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~~ 450 (488)
..+++|.|+|+.|+.-.++.. ...+.+-|||++++ .+++|++||.|+|++.
T Consensus 23 ~~~~~~~~~Tv~dLl~~L~~~-----------~~~v~VavNg~~v~-~~~~L~dGD~V~i~pp 73 (77)
T 1rws_A 23 KEIEWREGMKVRDILRAVGFN-----------TESAIAKVNGKVVL-EDDEVKDGDFVEVIPV 73 (77)
T ss_dssp CCCCCCSSCCHHHHHHTTTCS-----------SCSSCEEETTEEEC-SSSCCCSSCCCBCSCC
T ss_pred EEEECCCCCcHHHHHHHhCCC-----------CcCEEEEECCEECC-CCCCcCCCCEEEEEcc
Confidence 356889999999998877532 13456789999995 9999999999999974
No 22
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=96.89 E-value=0.001 Score=51.01 Aligned_cols=51 Identities=25% Similarity=0.299 Sum_probs=40.9
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCC----CccCCCCEEEEeeCC
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPR----CKLKMGDVVELTPAI 451 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~----~~L~~GD~VeIi~~~ 451 (488)
..+++ .|+|+.|+.-.++.. ...+.+-+||+++| .+ ++|++||.|+|++..
T Consensus 7 ~~~~~-~~~tv~~ll~~l~~~-----------~~~v~vavN~~~v~-~~~~~~~~L~dgD~v~i~~~V 61 (64)
T 2cu3_A 7 EPRPL-EGKTLKEVLEEMGVE-----------LKGVAVLLNEEAFL-GLEVPDRPLRDGDVVEVVALM 61 (64)
T ss_dssp EEECC-TTCCHHHHHHHHTBC-----------GGGEEEEETTEEEE-GGGCCCCCCCTTCEEEEEECC
T ss_pred EEEEc-CCCcHHHHHHHcCCC-----------CCcEEEEECCEECC-ccccCCcCCCCCCEEEEEeec
Confidence 57788 999999998877433 23456889999995 55 999999999999853
No 23
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.0016 Score=67.13 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=40.8
Q ss_pred cCCC-CcHHHHHHHhcCCCCCCCCCCCCCcccc----ccccCCcccCCCCCccCCCCEEEEee
Q 011341 392 FPTS-STVMDLLERAGRGSSRWSPYGFPLKEEL----RPRLNHKAVGDPRCKLKMGDVVELTP 449 (488)
Q Consensus 392 lp~G-sT~~DfAy~i~~~~~~~~~~g~~~~~~v----~akvN~~~v~~l~~~L~~GD~VeIi~ 449 (488)
+++| ||+.|||..||++.. .+|..++ .||-+||.+ ..+|.|++||+|+|++
T Consensus 320 ~~a~~at~~D~a~~ih~d~~------~~F~~a~v~Gs~~K~~~r~e-Gkdyvv~DGDVi~iv~ 375 (376)
T 4a9a_A 320 LRSDRCSVKDFCNQIHKSLV------DDFRNALVYGSSVKHQPQYV-GLSHILEDEDVVTILK 375 (376)
T ss_dssp EBTTBCBHHHHHHHHCGGGG------GGEEEEEEESTTSSSSSEEE-CTTCBCCTTCEEEEEE
T ss_pred ccCCCCcHHHHHHHHHHHHH------HhhhHhhhcCcccCCCCCcc-CCCcEEcCCCEEEEEe
Confidence 4555 999999999999863 2344443 467888888 6999999999999985
No 24
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.17 E-value=0.0022 Score=65.85 Aligned_cols=54 Identities=7% Similarity=-0.025 Sum_probs=42.0
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCcccc--------------ccccCC--cccCCCCCccCCCCEEEEe
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEEL--------------RPRLNH--KAVGDPRCKLKMGDVVELT 448 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v--------------~akvN~--~~v~~l~~~L~~GD~VeIi 448 (488)
+...+++|+|+.|+|+.||+++. .+|.++. +||-.| |.. ..+|.+++||+|++.
T Consensus 291 raw~i~~G~ta~~aAg~IH~D~~------~gFi~Aev~~~~d~~~~~~~~~~k~~g~~r~e-gk~y~v~dgDii~f~ 360 (363)
T 1jal_A 291 RAWTVSVGATAPKAAAVIHTDFE------KGFIRAEVIAYEDFIQFNGENGAKEAGKWRLE-GKDYIVQDGDVMHFR 360 (363)
T ss_dssp EEEEEETTCBHHHHHHTTCTTHH------HHCCEEEEECHHHHHHTTSHHHHHHTTCCEEE-CTTCBCCTTCEEEEE
T ss_pred ceeEecCCCcHHHHHHhhHHHHH------hccEEEEEcCHHHHHHhCCHHHHHhcCCeecc-CCccEecCCCEEEEE
Confidence 78899999999999999999974 2233331 256556 555 589999999999985
No 25
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.11 E-value=0.0016 Score=67.69 Aligned_cols=58 Identities=5% Similarity=-0.017 Sum_probs=44.6
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCcccc--------------ccccCC--cccCCCCCccCCCCEEEEeeCC
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEEL--------------RPRLNH--KAVGDPRCKLKMGDVVELTPAI 451 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v--------------~akvN~--~~v~~l~~~L~~GD~VeIi~~~ 451 (488)
+...+++|+|+.|+|+.||+++. .+|.+|. +||-.| |.. ..+|.+++||+|++.-..
T Consensus 317 rawti~~g~ta~~aAg~IH~D~~------~gFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~-Gk~y~v~dgDii~f~fn~ 389 (396)
T 2ohf_A 317 RAWTIRKGTKAPQAAGKIHTDFE------KGFIMAEVMKYEDFKEEGSENAVKAAGKYRQQ-GRNYIVEDGDIIFFKFNT 389 (396)
T ss_dssp EEEEEETTCBHHHHHHTTCTHHH------HHEEEEEEECHHHHHHHCSHHHHHHTTCCEEE-CTTCBCCTTCEEEEEEC-
T ss_pred eeEEecCCCcHHHHHhhhHHHHH------hcceEEEEccHHHHHHhCCHHHHHhcCccccc-CCCceeeCCCEEEEEecC
Confidence 78899999999999999999973 2234333 566677 566 599999999999998644
Q ss_pred C
Q 011341 452 P 452 (488)
Q Consensus 452 ~ 452 (488)
+
T Consensus 390 ~ 390 (396)
T 2ohf_A 390 P 390 (396)
T ss_dssp -
T ss_pred C
Confidence 3
No 26
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.98 E-value=0.0025 Score=65.58 Aligned_cols=54 Identities=7% Similarity=0.009 Sum_probs=42.2
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCcccc--------------ccccCC--cccCCCCCccCCCCEEEEe
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEEL--------------RPRLNH--KAVGDPRCKLKMGDVVELT 448 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v--------------~akvN~--~~v~~l~~~L~~GD~VeIi 448 (488)
+...+++|+|+.|+|+.||+++. .+|.++. +||-.| |.. ..+|.+++||+|++.
T Consensus 296 ~aw~i~~g~ta~~~a~~IH~d~~------~~fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~-gk~y~v~dgdi~~~~ 365 (368)
T 2dby_A 296 RAWTVRRGTKAPRAAGEIHSDME------RGFIRAEVIPWDKLVEAGGWARAKERGWVRLE-GKDYEVQDGDVIYVL 365 (368)
T ss_dssp EEEEEETTCBHHHHHHHHCHHHH------HSCCEEEEEEHHHHHHHTSHHHHHHTTCCEEE-CTTCBCCTTEEEEEE
T ss_pred ceEEecCCCcHHHHHHhhHHHHH------hhCeEEEEccHHHHHHhCCHHHHHhcCCcccc-CCCceecCCCEEEEE
Confidence 78899999999999999999973 2334332 256667 455 589999999999985
No 27
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=95.77 E-value=0.0043 Score=48.88 Aligned_cols=53 Identities=15% Similarity=0.071 Sum_probs=39.8
Q ss_pred EEecCCCCcHHHHHHHhcCCCCCCCCCCCCCcccc--ccccCCcccCCCCCccCCCCEEEEeeC
Q 011341 389 VQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEEL--RPRLNHKAVGDPRCKLKMGDVVELTPA 450 (488)
Q Consensus 389 ~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v--~akvN~~~v~~l~~~L~~GD~VeIi~~ 450 (488)
.+++|.|+|+.|+--.+......+ ..+ .+-|||+.++ .+++|++||.|+|++.
T Consensus 19 ~~~~~~~~tv~~ll~~l~~~~p~~--------~~v~~~v~vNg~~v~-~~~~L~~gD~V~i~pp 73 (77)
T 2q5w_D 19 DIVLEQALTVQQFEDLLFERYPQI--------NNKKFQVAVNEEFVQ-KSDFIQPNDTVALIPP 73 (77)
T ss_dssp ECCCSSCEEHHHHHHHHHHHCGGG--------TTCCCEEEETTEEEC-TTSEECTTCEEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHCcch--------hcceEEEEECCEECC-CCCCcCCCCEEEEECC
Confidence 567899999999987663321101 123 5779999995 9999999999999973
No 28
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=95.27 E-value=0.017 Score=47.95 Aligned_cols=61 Identities=25% Similarity=0.308 Sum_probs=41.5
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCC-----CCCCccccccccCCcccCCCCCccCCCCEEEEeeC
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPY-----GFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPA 450 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~-----g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~~ 450 (488)
..+++|.|+|+.|+--.+......+... | .....+.+-|||+.++ ++++|++||.|+|++.
T Consensus 29 ~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g-~~~~~v~v~VNg~~v~-~~~~L~dGDeV~i~pp 94 (98)
T 1vjk_A 29 EEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGY-DEDADVNIAVNGRYVS-WDEELKDGDVVGVFPP 94 (98)
T ss_dssp EEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSS-CTTSSBEEEETTBCCC-TTCBCCTTCEEEEESC
T ss_pred EEEECCCCCCHHHHHHHHHhHChhHHHHhhcccc-ccCCcEEEEECCEECC-CCCCCCCCCEEEEECC
Confidence 4578899999999876653221101000 0 0113456789999995 9999999999999974
No 29
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=94.80 E-value=0.03 Score=43.88 Aligned_cols=55 Identities=18% Similarity=0.149 Sum_probs=39.7
Q ss_pred EecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEeeC
Q 011341 390 QEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPA 450 (488)
Q Consensus 390 ~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~~ 450 (488)
+++ .|+|+.|+--.+....+ .. . ....+.+-|||+.|++.+++|++||.|.|++.
T Consensus 16 ~e~-~~~tv~~ll~~L~~~~~-l~---~-~l~~~~vavN~~~v~~~~~~l~~gDeV~i~Pp 70 (74)
T 3rpf_C 16 FFI-KANDLKELRAILQEKEG-LK---E-WLGVCAIALNDHLIDNLNTPLKDGDVISLLPP 70 (74)
T ss_dssp EEE-ECSSHHHHHHHHHTCTT-TT---T-TTTTCEEEESSSEECCTTCCCCTTCEEEEECC
T ss_pred Eee-CCCcHHHHHHHHHHCcC-HH---H-HhhccEEEECCEEcCCCCcCCCCCCEEEEECC
Confidence 566 89999999877654311 11 0 11345677999995579999999999999974
No 30
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=94.69 E-value=0.022 Score=46.08 Aligned_cols=62 Identities=18% Similarity=0.133 Sum_probs=41.4
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCC--C--CCCCccccccccCCcccCCCCCccCCCCEEEEeeC
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSP--Y--GFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPA 450 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~--~--g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~~ 450 (488)
..+++|.|+|+.|+--.+......+.. . +..+...+.+-|||+.++ .+++|++||.|.|++.
T Consensus 20 ~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~-~~~~l~~gDeV~i~Pp 85 (89)
T 3po0_A 20 VRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAA-LGEATAAGDELALFPP 85 (89)
T ss_dssp EEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECC-TTSBCCTTCEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECC-CCcccCCCCEEEEECC
Confidence 457899999999997665322110100 0 001112356779999995 9999999999999974
No 31
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=93.94 E-value=0.066 Score=42.27 Aligned_cols=55 Identities=25% Similarity=0.311 Sum_probs=37.3
Q ss_pred CCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEeeC
Q 011341 393 PTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPA 450 (488)
Q Consensus 393 p~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~~ 450 (488)
|.|+|+.|+--.+......+... .. ...+.+-|||+.++ ++++|++||.|+|++.
T Consensus 23 ~~~~tv~~ll~~L~~~~p~~~~~-l~-~~~~~v~vN~~~v~-~~~~l~~gD~V~i~Pp 77 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSDRWALA-LE-DGKLLAAVNQTLVS-FDHPLTDGDEVAFFPP 77 (81)
T ss_dssp SCCSBHHHHHHHHHTTCHHHHHH-HC-CTTCEEEETTEECC-TTCBCCTTCEEEEECC
T ss_pred CCCCCHHHHHHHHHHHChhHHHH-hc-CCCEEEEECCEECC-CCCCCCCCCEEEEeCC
Confidence 78999999887764331100000 00 01235789999994 9999999999999974
No 32
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=93.61 E-value=0.065 Score=43.11 Aligned_cols=60 Identities=20% Similarity=0.187 Sum_probs=40.1
Q ss_pred EEecCCCCcHHHHHHHhcCCCCCCC------CCCCCCccccccccCCcccC---CCCCccCCCCEEEEeeC
Q 011341 389 VQEFPTSSTVMDLLERAGRGSSRWS------PYGFPLKEELRPRLNHKAVG---DPRCKLKMGDVVELTPA 450 (488)
Q Consensus 389 ~~~lp~GsT~~DfAy~i~~~~~~~~------~~g~~~~~~v~akvN~~~v~---~l~~~L~~GD~VeIi~~ 450 (488)
..++|.|+|+.|+--.+........ .-| ....+.+-|||+.++ .++++|++||.|+|++.
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g--~~~~v~v~vN~~~v~~~~~~~~~l~~gD~V~i~pp 86 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNN--LFKNVIILVNGNNITSMKGLDTEIKDDDKIDLFPP 86 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSC--STTTCEEEESSSBGGGTCSSSCBCCTTCEEEEECC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccC--cCcceEEEECCEEccccCCCCcCCCCCCEEEEeCC
Confidence 4678889999998766532210000 000 113456789999984 26899999999999974
No 33
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=93.41 E-value=0.025 Score=58.59 Aligned_cols=54 Identities=7% Similarity=-0.039 Sum_probs=39.8
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCcccc--------------ccccCCc--ccCCCCCccCCCCEEEEe
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEEL--------------RPRLNHK--AVGDPRCKLKMGDVVELT 448 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v--------------~akvN~~--~v~~l~~~L~~GD~VeIi 448 (488)
+...+++|+|+-++|+.||+|+. .+|.++. +||=.|+ .. ..+|.+++||+|++.
T Consensus 319 rawti~~G~~a~~aag~IH~d~~------~gfi~ae~~~~~d~~~~g~~~~~k~~g~~r~~-gk~y~v~dgdv~~f~ 388 (392)
T 1ni3_A 319 RSWTIRKGTKAPQAAGVIHTDFE------KAFVVGEIMHYQDLFDYKTENACRAAGKYLTK-GKEYVMESGDIAHWK 388 (392)
T ss_dssp EEEEEETTCBHHHHHHHHCHHHH------HTCSEEEEECHHHHHHHTSHHHHHHTTCSCEE-ETTCBCCTTCEEECC
T ss_pred eeEEeCCCCcHHHHccccchhhh------hccEEEEECCHHHHHHcCCHHHHHHcCCcccc-CCceeeeCCCEEEEE
Confidence 78899999999999999999974 2233332 2343344 23 488999999999864
No 34
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=92.54 E-value=1.2 Score=41.68 Aligned_cols=95 Identities=18% Similarity=0.189 Sum_probs=53.4
Q ss_pred CcchhHHHHHHHHHH---H-----Hc--CCCH-HHHHHHhhhccccc--cCC-CH-----HHHHhHhhHHHHHHHHHhcc
Q 011341 5 GDPYLLHCVETAMLL---A-----AI--GANS-TVVAAGLLHDTLDD--AFL-SY-----DYIFRTFGAGVADLVEGVSK 65 (488)
Q Consensus 5 G~Pyi~H~l~VA~iL---a-----~l--g~D~-~~i~AALLHDvvED--t~~-t~-----eel~~~FG~~Va~lV~~vTk 65 (488)
++....|...||.+. + ++ ++|. .++.+|||||+.|- .++ |+ .++.+.+++.=...+..+..
T Consensus 29 ~EnVaeHS~~VA~lA~~la~~~~~~~~~~vD~~~~~~~aLlHDi~E~~~GDi~~p~k~~~~~~~~~~~~~E~~~~~~i~~ 108 (201)
T 2paq_A 29 TENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPVKYFNSQIAQEYKAIEKIAQQKLVD 108 (201)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTTHHHHCCCCCC---------CTHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHHHhhhHHhcCcccCHHHHHHHHHhcccccccCCCCCchHhhhchHHHHHhcccHHHHHHHHHH
Confidence 467789999999753 3 22 4565 47788999999883 222 21 24444455433233333322
Q ss_pred ccccchHHhhcccccchHHHHHHHHHHhhc--CCchhhHHHHhhHHhhh
Q 011341 66 LSQLSKLARENNTASKTVEADRLHTMFLAM--ADARAVLIKLADRLHNM 112 (488)
Q Consensus 66 ~~~~~~~~r~~~~~~~~~~~e~lRkmlla~--~D~rvvlIKLADRLhNm 112 (488)
. ++. .+.+.++.+.... ..+.+.+||-||++.-+
T Consensus 109 ~--Lp~-----------~~~~e~~~l~~e~e~~t~ea~lvk~aD~l~a~ 144 (201)
T 2paq_A 109 M--VPE-----------ELRDIFAPLIDEHAYSDEEKSLVKQADALCAY 144 (201)
T ss_dssp T--SCG-----------GGHHHHHHHHTTTSCCHHHHHHHHHHHHHHHH
T ss_pred h--CCH-----------HHHHHHHHHHhcccCCCHHHHHHHHHHHHHHH
Confidence 1 111 1234455544433 25789999999999766
No 35
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=90.22 E-value=0.77 Score=42.85 Aligned_cols=34 Identities=24% Similarity=0.129 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHH----cCCCHH-HHHHHhhhcccccc
Q 011341 8 YLLHCVETAMLLAA----IGANST-VVAAGLLHDTLDDA 41 (488)
Q Consensus 8 yi~H~l~VA~iLa~----lg~D~~-~i~AALLHDvvEDt 41 (488)
-+.|.+.|+.+... .+.|.+ +.+||||||+.-..
T Consensus 26 ~~~H~~rV~~~a~~ia~~~~~d~~~v~~AAlLHDig~~~ 64 (209)
T 3b57_A 26 DWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDIK 64 (209)
T ss_dssp CHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTCCC--
T ss_pred CHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCccc
Confidence 37899999986643 477865 56899999997653
No 36
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=88.74 E-value=1.5 Score=41.45 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHH-----cCCCHH-HHHHHhhhccccc
Q 011341 8 YLLHCVETAMLLAA-----IGANST-VVAAGLLHDTLDD 40 (488)
Q Consensus 8 yi~H~l~VA~iLa~-----lg~D~~-~i~AALLHDvvED 40 (488)
-+.|.+.|+..... .+.|.+ ..+||||||+...
T Consensus 26 ~~~H~~rV~~~a~~i~a~~~~~d~~~l~lAAlLHDigk~ 64 (225)
T 2qgs_A 26 DIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVDS 64 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTCC
T ss_pred CHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHcCCCC
Confidence 47899999986433 356654 5689999999874
No 37
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=88.31 E-value=0.48 Score=39.16 Aligned_cols=60 Identities=18% Similarity=0.179 Sum_probs=38.3
Q ss_pred EEecCCCCcHHHHHHHhcCCCCCCCC----CCCCCcccc-------ccccCCcccC---CCCCccCCCCEEEEeeC
Q 011341 389 VQEFPTSSTVMDLLERAGRGSSRWSP----YGFPLKEEL-------RPRLNHKAVG---DPRCKLKMGDVVELTPA 450 (488)
Q Consensus 389 ~~~lp~GsT~~DfAy~i~~~~~~~~~----~g~~~~~~v-------~akvN~~~v~---~l~~~L~~GD~VeIi~~ 450 (488)
..+++ |+|+.|+--.+......... .| .+...+ .+-|||+.++ .++++|++||.|+|++.
T Consensus 22 ~~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g-~l~~~v~~~~~~~~v~VNg~~v~~~~~~~~~L~~gD~V~i~pp 95 (99)
T 2l52_A 22 ELPLS-GEKVIDVLLSLTDKYPALKYVIFEKG-DEKSEILILCGSINILINGNNIRHLEGLETLLKDSDEIGILPP 95 (99)
T ss_dssp EEEEE-CSSHHHHHHHHHHHCGGGTTTSBCSC-CTTSSCCCBCSSCEEEETTSCGGGTTSTTSCCCTTEEEEEECC
T ss_pred eEEEe-CCcHHHHHHHHHHHChhHHHHHhccc-ccccceeccccccEEEECCEEccccCCCCCCCCCCCEEEEECC
Confidence 45677 89999987665322110000 01 011223 5789999883 37899999999999974
No 38
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=86.48 E-value=2.1 Score=40.63 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=24.4
Q ss_pred chhHHHHHHHHHHH----HcCCCHH-HHHHHhhhcccc
Q 011341 7 PYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLD 39 (488)
Q Consensus 7 Pyi~H~l~VA~iLa----~lg~D~~-~i~AALLHDvvE 39 (488)
.-+.|..+|+.+.. ..+.|.+ ..+||||||+..
T Consensus 25 H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AalLHDig~ 62 (223)
T 3dto_A 25 HDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLID 62 (223)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccc
Confidence 45789999988554 3477765 667889999985
No 39
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=86.26 E-value=0.27 Score=39.91 Aligned_cols=61 Identities=18% Similarity=0.130 Sum_probs=38.3
Q ss_pred EecCCCCcHHHHHHHhcCCCCCCCC-C-----CCCCccccccccCCcccCC---CCCccCCCCEEEEeeCC
Q 011341 390 QEFPTSSTVMDLLERAGRGSSRWSP-Y-----GFPLKEELRPRLNHKAVGD---PRCKLKMGDVVELTPAI 451 (488)
Q Consensus 390 ~~lp~GsT~~DfAy~i~~~~~~~~~-~-----g~~~~~~v~akvN~~~v~~---l~~~L~~GD~VeIi~~~ 451 (488)
++ +.|+|+.|+--.+......... . +......+..-|||+.++. ++++|++||.|.|++..
T Consensus 21 ~~-~~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~~~~L~~gDeV~i~Ppv 90 (93)
T 3dwg_C 21 VS-ASGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGLATAIADGDSVTILPAV 90 (93)
T ss_dssp EE-ECCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGGGCBCCTTCEEEEEECC
T ss_pred Ee-cCCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCCCcCCCCCCEEEEECCC
Confidence 45 6899999997665321110000 0 0011223567899999842 58999999999999843
No 40
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=85.68 E-value=2 Score=40.78 Aligned_cols=32 Identities=34% Similarity=0.313 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHH----cCCCHH-HHHHHhhhcccc
Q 011341 8 YLLHCVETAMLLAA----IGANST-VVAAGLLHDTLD 39 (488)
Q Consensus 8 yi~H~l~VA~iLa~----lg~D~~-~i~AALLHDvvE 39 (488)
-+.|...|+..... .+.|.+ ..+||||||+..
T Consensus 31 ~~~H~~rV~~~a~~ia~~~~~d~~ll~lAAlLHDigk 67 (231)
T 2pjq_A 31 GRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVID 67 (231)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCc
Confidence 47899999986643 467876 458899999985
No 41
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=84.93 E-value=3 Score=38.84 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=24.6
Q ss_pred CcchhHHHHHHHHHHH----HcCCCHH-HHHHHhhhcc
Q 011341 5 GDPYLLHCVETAMLLA----AIGANST-VVAAGLLHDT 37 (488)
Q Consensus 5 G~Pyi~H~l~VA~iLa----~lg~D~~-~i~AALLHDv 37 (488)
+...+.|.+.|+.+.. ..+.|.+ ..+||||||+
T Consensus 31 ~~h~~~H~~rV~~~a~~la~~~~~d~~~l~~AaLLHDI 68 (220)
T 2pq7_A 31 PAHDISHTFRVMENASEIASREKCDLQKAIIAALLHDI 68 (220)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTT
T ss_pred CchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcC
Confidence 3445789999998654 3467754 5689999999
No 42
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=79.63 E-value=1.2 Score=40.60 Aligned_cols=60 Identities=27% Similarity=0.285 Sum_probs=38.5
Q ss_pred EEecCCCCcHHHHHHHhcCCCCCCCCC---CCCCccccccccCCcccCCC----CCccCCCCEEEEeeC
Q 011341 389 VQEFPTSSTVMDLLERAGRGSSRWSPY---GFPLKEELRPRLNHKAVGDP----RCKLKMGDVVELTPA 450 (488)
Q Consensus 389 ~~~lp~GsT~~DfAy~i~~~~~~~~~~---g~~~~~~v~akvN~~~v~~l----~~~L~~GD~VeIi~~ 450 (488)
.+++|. +|+.|+--.+.......... .......+.+-|||+.++ . +++|++||.|+|++.
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~-~~~~~dt~L~dGDeVai~Pp 83 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVR-YLQGLSTPLSPGATLDLFPP 83 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGG-GTTGGGCBCCTTCEEEEECS
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECC-CcCCCccCCCCCCEEEEECc
Confidence 467885 99999876653221100000 000012356789999995 6 899999999999983
No 43
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=78.77 E-value=4.5 Score=38.23 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=25.2
Q ss_pred chhHHHHHHHHHHHHc----CCCHH-HHHHHhhhcccc
Q 011341 7 PYLLHCVETAMLLAAI----GANST-VVAAGLLHDTLD 39 (488)
Q Consensus 7 Pyi~H~l~VA~iLa~l----g~D~~-~i~AALLHDvvE 39 (488)
.-+.|..+|+.+...+ +.|.+ ..+||||||+..
T Consensus 25 H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AAlLHDig~ 62 (223)
T 3djb_A 25 HDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVAD 62 (223)
T ss_dssp TTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccc
Confidence 4589999999866543 56754 667889999986
No 44
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=77.17 E-value=2.9 Score=35.50 Aligned_cols=61 Identities=11% Similarity=0.124 Sum_probs=39.1
Q ss_pred EEecC---CCCcHHHHHHHhcCCCCCCC-----CCCCCCccccccccCCccc---CCCCCccCCCCEEEEeeC
Q 011341 389 VQEFP---TSSTVMDLLERAGRGSSRWS-----PYGFPLKEELRPRLNHKAV---GDPRCKLKMGDVVELTPA 450 (488)
Q Consensus 389 ~~~lp---~GsT~~DfAy~i~~~~~~~~-----~~g~~~~~~v~akvN~~~v---~~l~~~L~~GD~VeIi~~ 450 (488)
.+++| .++|+.|+--.+........ .-| .++..+-+-||++-+ ..++|+|++||.|.|+++
T Consensus 33 ~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g-~lr~~i~VlVN~~di~~l~gldt~L~dGDeV~iip~ 104 (114)
T 1wgk_A 33 QVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGD-SVRPGILVLINDADWELLGELDYQLQDQDSILFIST 104 (114)
T ss_dssp EEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSS-SCCSSEEEEESSSBHHHHCTTTCBCCSSEEEEEEEC
T ss_pred EEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCC-cccCCeEEEECCeeeeccCCcCcCCCCCCEEEEeCC
Confidence 36788 44799998766533320000 001 123446678999843 259999999999999983
No 45
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=76.20 E-value=2.1 Score=35.15 Aligned_cols=61 Identities=15% Similarity=0.176 Sum_probs=37.7
Q ss_pred EEecC--CCCcHHHHHHHhcCCCC-CCCCC------CCCCccccccccCCcccC---CCCCccCCCCEEEEeeC
Q 011341 389 VQEFP--TSSTVMDLLERAGRGSS-RWSPY------GFPLKEELRPRLNHKAVG---DPRCKLKMGDVVELTPA 450 (488)
Q Consensus 389 ~~~lp--~GsT~~DfAy~i~~~~~-~~~~~------g~~~~~~v~akvN~~~v~---~l~~~L~~GD~VeIi~~ 450 (488)
.+++| .|+|+.|+--.+..... .+... | .....+-+-||++.+. .++++|++||.|-+++.
T Consensus 23 ~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~-~lr~~~~v~VN~~~~~~~~~~d~~L~dgDeVa~~Pp 95 (99)
T 2qjl_A 23 KIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDD-SIRPGIITLINDTDWELEGEKDYILEDGDIISFTST 95 (99)
T ss_dssp EEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETT-EECTTEEEEETTEEGGGGTGGGCBCCTTCEEEEEEC
T ss_pred EEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCC-ccccCeEEEECCEEccccCCCCcCcCCCCEEEEECC
Confidence 35678 89999998766532210 00000 0 0111233679999541 37899999999999973
No 46
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=72.82 E-value=2.6 Score=40.45 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHc----CCCH-HHHHHHhhhccccc
Q 011341 9 LLHCVETAMLLAAI----GANS-TVVAAGLLHDTLDD 40 (488)
Q Consensus 9 i~H~l~VA~iLa~l----g~D~-~~i~AALLHDvvED 40 (488)
+.|.++|+.....+ +.|. ...+||||||+.-.
T Consensus 27 ~~H~~rV~~~a~~ia~~~~~d~~~~~~AalLHDig~~ 63 (239)
T 3gw7_A 27 VCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSL 63 (239)
T ss_dssp CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 68999999877654 4554 47789999999764
No 47
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=72.67 E-value=2.7 Score=38.65 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=25.3
Q ss_pred chhHHHHHHHHHHH----HcCCCHH-HHHHHhhhccccc
Q 011341 7 PYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLDD 40 (488)
Q Consensus 7 Pyi~H~l~VA~iLa----~lg~D~~-~i~AALLHDvvED 40 (488)
..+.|.+.||.+.. .+|+|.+ ..+||||||+=.-
T Consensus 26 ~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDIGK~ 64 (196)
T 2ogi_A 26 KRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKE 64 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHcCCc
Confidence 35689999998543 4688754 5689999998553
No 48
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=71.25 E-value=3 Score=37.91 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=25.4
Q ss_pred chhHHHHHHHHHHH----HcCCCH-HHHHHHhhhccccc
Q 011341 7 PYLLHCVETAMLLA----AIGANS-TVVAAGLLHDTLDD 40 (488)
Q Consensus 7 Pyi~H~l~VA~iLa----~lg~D~-~~i~AALLHDvvED 40 (488)
..+.|.+.||.+.. .+|+|. ...+||||||+=.-
T Consensus 18 ~~~~Hs~~Va~~A~~lA~~~g~~~~~~~~agLLHDIGk~ 56 (188)
T 2o08_A 18 HRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAKF 56 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 35689999998543 468875 46789999998553
No 49
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=71.19 E-value=3.1 Score=37.97 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHH----HcCCCH-HHHHHHhhhccccc
Q 011341 8 YLLHCVETAMLLA----AIGANS-TVVAAGLLHDTLDD 40 (488)
Q Consensus 8 yi~H~l~VA~iLa----~lg~D~-~~i~AALLHDvvED 40 (488)
.+.|.+.||.+.. .+|+|. ...+||||||+=.-
T Consensus 20 ~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDiGk~ 57 (190)
T 3ccg_A 20 RYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAKK 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC
Confidence 4689999998543 468875 46789999998553
No 50
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}
Probab=70.16 E-value=8.8 Score=35.75 Aligned_cols=93 Identities=16% Similarity=0.061 Sum_probs=49.7
Q ss_pred cchhHHHHHHHHHH---HHc---CCCH-HHHHHHhhhccccc-c-CCCHH--HHHhHhhHHHHHHHHHhccccccchHHh
Q 011341 6 DPYLLHCVETAMLL---AAI---GANS-TVVAAGLLHDTLDD-A-FLSYD--YIFRTFGAGVADLVEGVSKLSQLSKLAR 74 (488)
Q Consensus 6 ~Pyi~H~l~VA~iL---a~l---g~D~-~~i~AALLHDvvED-t-~~t~e--el~~~FG~~Va~lV~~vTk~~~~~~~~r 74 (488)
+..-.|...||.+. ++. ++|. .++..||+||+.|- | +++.- .....+-..=...++.+. ..++.
T Consensus 39 EsVAeHS~~vAliA~~la~~~~~~vd~~r~~~maL~HDl~E~~tGDi~~~~~~~~~~~~~~E~~A~~~l~--~~LP~--- 113 (200)
T 3kh1_A 39 ENDAEHSWHIATMAFLLAEYADEAVQIGRVARMLLIHDIVEIDAGDTFIHDEAGNEDKEERERKAAARLF--GLLPP--- 113 (200)
T ss_dssp EEHHHHHHHHHHHHHHTGGGSCTTCCHHHHHHHHHHTTTTHHHHCCCCTTCCC---CHHHHHHHHHHHHH--TTSCH---
T ss_pred ccHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHhcChHHHHhCCccccccccHHHHHHHHHHHHHHHH--HhCCh---
Confidence 55678999999863 332 3675 68889999999993 2 23210 111111110011112121 11221
Q ss_pred hcccccchHHHHHHHHHHhhc---CCchhhHHHHhhHHhh
Q 011341 75 ENNTASKTVEADRLHTMFLAM---ADARAVLIKLADRLHN 111 (488)
Q Consensus 75 ~~~~~~~~~~~e~lRkmlla~---~D~rvvlIKLADRLhN 111 (488)
.+.+.++.++... ..+.+.+||-||++.-
T Consensus 114 --------~~~~e~~~Lw~EyE~~~t~Ea~~vK~~Dkl~~ 145 (200)
T 3kh1_A 114 --------DQAAEYSALWQEYEARETADARFADALDRLQP 145 (200)
T ss_dssp --------HHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 1234455544433 3788999999999973
No 51
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=68.71 E-value=4.3 Score=36.89 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=26.9
Q ss_pred cchhHHHHHHHHHH---HH------cCCCHH-HHHHHhhhccccc
Q 011341 6 DPYLLHCVETAMLL---AA------IGANST-VVAAGLLHDTLDD 40 (488)
Q Consensus 6 ~Pyi~H~l~VA~iL---a~------lg~D~~-~i~AALLHDvvED 40 (488)
+.-..|...||.+. +. -+.|.. ++.+|||||+.|.
T Consensus 31 esvaeHs~rVa~~A~~la~~~~~~~~~~d~~~v~~~aLlHD~~E~ 75 (177)
T 2cqz_A 31 ESIADHSFGVAFITLVLADVLEKRGKRIDVEKALKMAIVHDLAEA 75 (177)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHH
Confidence 56678999998865 43 467766 6889999999873
No 52
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=68.66 E-value=3.5 Score=42.22 Aligned_cols=31 Identities=35% Similarity=0.367 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHH----HcCCCHH-HHHHHhhhccc
Q 011341 8 YLLHCVETAMLLA----AIGANST-VVAAGLLHDTL 38 (488)
Q Consensus 8 yi~H~l~VA~iLa----~lg~D~~-~i~AALLHDvv 38 (488)
-++|.++||.+.. .+|++++ +-+||||||+=
T Consensus 76 Rl~HSl~Va~iar~ia~~l~l~~~l~~~a~LlHDiG 111 (376)
T 2dqb_A 76 RLTHTLEVAQVSRSIARALGLNEDLTEAIALSHDLG 111 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4699999998653 5788865 45788999986
No 53
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=62.76 E-value=9.5 Score=32.08 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=37.9
Q ss_pred EEecCC--C--CcHHHHHHHhcCCCCCCCC--C---C-CCCccccccccCCccc---CCCCCccCCCCEEEEee
Q 011341 389 VQEFPT--S--STVMDLLERAGRGSSRWSP--Y---G-FPLKEELRPRLNHKAV---GDPRCKLKMGDVVELTP 449 (488)
Q Consensus 389 ~~~lp~--G--sT~~DfAy~i~~~~~~~~~--~---g-~~~~~~v~akvN~~~v---~~l~~~L~~GD~VeIi~ 449 (488)
.+++|. | +|+.|+--.+......... . | ......+-+-|||+-+ ..++|+|++||.|.+++
T Consensus 24 ~v~l~~~~g~~~TV~dLl~~L~~~~~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 24 SLQLDGVVPTGTNLNGLVQLLKTNYVKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp EECCCCSCGGGCCHHHHHHHHTTTTCCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTSSCCCCCSSCEEEEEE
T ss_pred EEEeCCcCCCCccHHHHHHHHHHHccccchhhEecCCCcccCCCeEEEECCeeeeccCCcccCCCCcCEEEEeC
Confidence 467884 4 5999987665433210000 0 0 0122334478999865 24899999999999997
No 54
>3mzo_A LIN2634 protein; HD-domain phosphohydrolase, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.98A {Listeria innocua}
Probab=60.46 E-value=13 Score=34.87 Aligned_cols=96 Identities=8% Similarity=0.092 Sum_probs=51.2
Q ss_pred cchhHHHHHHHHHH---HH----cC--CCH-HHHHHHhhhccccc-c-CC-C-----HHHHHhHhhHHHHHHHHHhcccc
Q 011341 6 DPYLLHCVETAMLL---AA----IG--ANS-TVVAAGLLHDTLDD-A-FL-S-----YDYIFRTFGAGVADLVEGVSKLS 67 (488)
Q Consensus 6 ~Pyi~H~l~VA~iL---a~----lg--~D~-~~i~AALLHDvvED-t-~~-t-----~eel~~~FG~~Va~lV~~vTk~~ 67 (488)
+..-.|...||.+. +. .| +|. .++..||+||+.|- + ++ | ..++.+.+.+-=..+++.+. ..
T Consensus 29 EsvAeHS~~vA~iA~~La~~~~~~~~~vD~~r~~~maL~HDl~E~~~GDi~tPvk~~~~~~~~~~~~~E~~a~~~li-~~ 107 (216)
T 3mzo_A 29 HSVAEHSYKVTSIAQFFGAVEEDAGNEVNWRALYEKALNHDYSELFIGDIKTPVKYATTELREMLSEVEESMTKNFI-SR 107 (216)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTGGGGTSCCCCSCSSSCCHHHHHHHHHHHHHHHHHHH-HH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHccHHHHHcCCCCchhcccchhhHHHHHHHHHHHHHHHH-Hc
Confidence 45678999988753 31 23 554 47889999999994 1 22 1 12333333321111111110 01
Q ss_pred ccchHHhhcccccchHHHHHHHHHHhhc--CCchhhHHHHhhHHhhhc
Q 011341 68 QLSKLARENNTASKTVEADRLHTMFLAM--ADARAVLIKLADRLHNMM 113 (488)
Q Consensus 68 ~~~~~~r~~~~~~~~~~~e~lRkmlla~--~D~rvvlIKLADRLhNmr 113 (488)
.++. .+.+.++.++..- ..+.+.+||-||++.-+-
T Consensus 108 ~LP~-----------~~~~~~~~~~~e~~~~t~ea~~vK~aDkl~~~l 144 (216)
T 3mzo_A 108 EIPA-----------TFQPIYRHLLKEGKDSTLEGKILAISDKVDLLY 144 (216)
T ss_dssp HSCG-----------GGHHHHHHHHSCCCSSSHHHHHHHHHHHHHHHH
T ss_pred cCCH-----------HHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence 1221 1234455554432 367899999999997654
No 55
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens}
Probab=59.09 E-value=37 Score=31.57 Aligned_cols=93 Identities=15% Similarity=0.170 Sum_probs=52.9
Q ss_pred CcchhHHHHHHHHHHHHc---CCCH-HHHHHHhhhccccc--cCCCHHHHHhHhhHHHH-----HHHHHhccccccchHH
Q 011341 5 GDPYLLHCVETAMLLAAI---GANS-TVVAAGLLHDTLDD--AFLSYDYIFRTFGAGVA-----DLVEGVSKLSQLSKLA 73 (488)
Q Consensus 5 G~Pyi~H~l~VA~iLa~l---g~D~-~~i~AALLHDvvED--t~~t~eel~~~FG~~Va-----~lV~~vTk~~~~~~~~ 73 (488)
.+..-.|...||.+..-+ ++|. .++..||+||+.|- +++|+- +..+...- ..++.+. ..++
T Consensus 43 ~ESVAEHS~~vAliA~~l~~~~vD~~r~~~maL~HDl~E~~tGDitp~---k~~~~~~k~~~E~~A~~~l~--~~LP--- 114 (204)
T 4dmb_A 43 PESVSDHMYRMAVMAMVIKDDRLNKDRCVRLALVHDMAECIVGDIAPA---DNIPKEEKHRREEEAMKQIT--QLLP--- 114 (204)
T ss_dssp CCBHHHHHHHHHHHHHHSCCTTSCHHHHHHHHHHTTTTHHHHCCCCGG---GCCCHHHHHHHHHHHHHHHH--TTSC---
T ss_pred CCcHHHHHHHHHHHHHHHccccCCHHHHHHHHHhcchHHhhcCCCccc---cccchhhhHHHHHHHHHHHH--HhCC---
Confidence 366789999999865544 4675 68889999999994 234421 00111000 1111111 1122
Q ss_pred hhcccccchHHHHHHHHHHhhc---CCchhhHHHHhhHHhhhc
Q 011341 74 RENNTASKTVEADRLHTMFLAM---ADARAVLIKLADRLHNMM 113 (488)
Q Consensus 74 r~~~~~~~~~~~e~lRkmlla~---~D~rvvlIKLADRLhNmr 113 (488)
..+.+.++.++... ..+.+.+||-||++.-+-
T Consensus 115 --------~~~~~e~~~Lw~Eye~~~t~Ea~~vK~aDkle~ll 149 (204)
T 4dmb_A 115 --------EDLRKELYELWEEYETQSSAEAKFVKQLDQCEMIL 149 (204)
T ss_dssp --------HHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 11234555555443 378899999999997653
No 56
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=58.63 E-value=5.2 Score=32.02 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.4
Q ss_pred ccccCCcccCCCCCccCCCCEEEEee
Q 011341 424 RPRLNHKAVGDPRCKLKMGDVVELTP 449 (488)
Q Consensus 424 ~akvN~~~v~~l~~~L~~GD~VeIi~ 449 (488)
.++|||+.+ ..++.|+.||+|+|.-
T Consensus 27 ~V~VNg~~~-~~~~~v~~gd~I~v~~ 51 (92)
T 2k6p_A 27 AVWLNGSCA-KASKEVKAGDTISLHY 51 (92)
T ss_dssp CCEETTEEC-CTTCBCCTTCEEEECC
T ss_pred cEEECCEEc-CCCCCcCCCCEEEEEe
Confidence 368999988 5899999999999853
No 57
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=58.51 E-value=6.5 Score=37.74 Aligned_cols=33 Identities=27% Similarity=0.276 Sum_probs=26.9
Q ss_pred cchhHHHHHHHHHHHHcCCCHH-HHHHHhhhccc
Q 011341 6 DPYLLHCVETAMLLAAIGANST-VVAAGLLHDTL 38 (488)
Q Consensus 6 ~Pyi~H~l~VA~iLa~lg~D~~-~i~AALLHDvv 38 (488)
.|=+.|.+..|.....-|.|.+ .+.||||||.=
T Consensus 58 v~ql~HaLQTAe~ar~dg~d~dw~~laaLlHDLG 91 (250)
T 2ibn_A 58 FPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLG 91 (250)
T ss_dssp CCHHHHHHHHHHHHHHHSTTCHHHHHHHHHTTGG
T ss_pred ccHHHHHHHHHHHHHHhCcChhHHHHHHHHhccH
Confidence 3458999999998888899845 44999999973
No 58
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=57.79 E-value=6.3 Score=40.22 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=26.9
Q ss_pred cchhHHHHHHHHHHH----HcCCCH--HHHHHHhhhccccc
Q 011341 6 DPYLLHCVETAMLLA----AIGANS--TVVAAGLLHDTLDD 40 (488)
Q Consensus 6 ~Pyi~H~l~VA~iLa----~lg~D~--~~i~AALLHDvvED 40 (488)
...+.|.++||.+.. .+|.|. ...+||||||+-.-
T Consensus 49 ~~r~~Hsl~V~~~a~~ia~~~~~~~~~~~~~AaLLHDiG~~ 89 (371)
T 2hek_A 49 HTRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGHP 89 (371)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTCC
T ss_pred CChhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcc
Confidence 356899999998553 567775 47899999998663
No 59
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=48.49 E-value=7.7 Score=30.22 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=20.6
Q ss_pred ccccCCcccCCCCCccCCCCEEEEe
Q 011341 424 RPRLNHKAVGDPRCKLKMGDVVELT 448 (488)
Q Consensus 424 ~akvN~~~v~~l~~~L~~GD~VeIi 448 (488)
.++|||+.+....+.+..||+|+|-
T Consensus 47 ~V~VNG~~v~~~~~~v~~gd~I~v~ 71 (79)
T 1p9k_A 47 QVKVDGAVETRKRCKIVAGQTVSFA 71 (79)
T ss_dssp HHEETTBCCCCSSCCCCSSEEEEET
T ss_pred EEEECCEEecCCCCCCCCCCEEEEC
Confidence 4689999874578999999988873
No 60
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1
Probab=45.93 E-value=16 Score=34.13 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=27.8
Q ss_pred cchhHHHHHHHHHHHHc--CCCHHHHHHHhhhccccc
Q 011341 6 DPYLLHCVETAMLLAAI--GANSTVVAAGLLHDTLDD 40 (488)
Q Consensus 6 ~Pyi~H~l~VA~iLa~l--g~D~~~i~AALLHDvvED 40 (488)
+..-.|.+.||.+...+ +.|...+.+||+||..|-
T Consensus 54 eSVAeHS~~va~ia~~l~~~~~~r~~~~aL~HD~~E~ 90 (207)
T 2gz4_A 54 FTVAQHCLIVETIFCRMCPGATPDEMQMALLHDAPEY 90 (207)
T ss_dssp CBHHHHHHHHHHHHHHHCTTCCHHHHHHHHTTTTTHH
T ss_pred ccHHHHHHHHHHHHHHHCCCCCHHHHHHHHhcCchHh
Confidence 44568999999876533 567889999999999984
No 61
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=45.83 E-value=7.9 Score=33.25 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.3
Q ss_pred ccccCCcccCCCCCccCCCCEEEEe
Q 011341 424 RPRLNHKAVGDPRCKLKMGDVVELT 448 (488)
Q Consensus 424 ~akvN~~~v~~l~~~L~~GD~VeIi 448 (488)
|..|||+.|. -.++|++||+|.|=
T Consensus 91 gt~VNG~~V~-~~~~L~~GD~I~lG 114 (124)
T 3fm8_A 91 RTFVNGSSVS-SPIQLHHGDRILWG 114 (124)
T ss_dssp CEEETTEECC-SCEEECTTCEEEET
T ss_pred CEEECCEEcC-CcEECCCCCEEEEC
Confidence 5689999984 67899999999874
No 62
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1
Probab=44.90 E-value=19 Score=32.92 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=27.0
Q ss_pred cchhHHHHHHHHH---HHH------cCCCHH-HHHHHhhhccccc
Q 011341 6 DPYLLHCVETAML---LAA------IGANST-VVAAGLLHDTLDD 40 (488)
Q Consensus 6 ~Pyi~H~l~VA~i---La~------lg~D~~-~i~AALLHDvvED 40 (488)
+..-.|...||.+ |+. .++|.+ ++..||+||+.|-
T Consensus 36 EsvAeHS~~vA~ia~~la~~~~~~~~~~d~~r~~~~aL~HDl~E~ 80 (184)
T 1xx7_A 36 ESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGEA 80 (184)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHcCcHHh
Confidence 5667899998874 454 467875 7889999999883
No 63
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=44.43 E-value=21 Score=29.59 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=35.5
Q ss_pred EEecCCCCcHHHHHHHh---cCCCCCCCCCCCCCccccc-------------cccCCcccCC--CCCccCCCCEEEEe
Q 011341 389 VQEFPTSSTVMDLLERA---GRGSSRWSPYGFPLKEELR-------------PRLNHKAVGD--PRCKLKMGDVVELT 448 (488)
Q Consensus 389 ~~~lp~GsT~~DfAy~i---~~~~~~~~~~g~~~~~~v~-------------akvN~~~v~~--l~~~L~~GD~VeIi 448 (488)
.+. |.|+|++|+.-+. ..+-+-|| +|.++|. -.+||++.+. -+++|++||.|++-
T Consensus 24 ~v~-t~g~tL~dvLk~~~~ve~e~s~~G----~fITsI~G~~ad~~~~~yW~~~vng~~~~~Ga~~~~v~dGD~i~~~ 96 (101)
T 3u7z_A 24 EFD-TDAKYLGEVLESENLVDGESGEYG----LFITTVDEETADDSKQQWWCITKGGEQVNTSADQTPVSDGDAFELT 96 (101)
T ss_dssp EEE-ECCSBHHHHHHHTTCEEEECCTTS----CEEEEETTEECCGGGTEEEEEEETTEECCSCGGGCBCCTTCEEEEE
T ss_pred EEc-CCccHHHHHHHHcCcccccccccc----ceEEEEcCEecCCCCCCEEEEEECCEEhhhchhheEecCCCEEEEE
Confidence 356 9999999998654 33322222 1334442 1578987621 56999999999975
No 64
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=42.79 E-value=12 Score=32.43 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=20.7
Q ss_pred cccCCcccCCCCCccCCCCEEEEe
Q 011341 425 PRLNHKAVGDPRCKLKMGDVVELT 448 (488)
Q Consensus 425 akvN~~~v~~l~~~L~~GD~VeIi 448 (488)
++|||+.+ ..++.|+.||+|+|.
T Consensus 36 V~VNG~~v-k~s~~V~~GD~I~I~ 58 (133)
T 1dm9_A 36 VHYNGQRS-KPSKIVELNATLTLR 58 (133)
T ss_dssp EEETTEEC-CTTCBCCTTCEEEEE
T ss_pred EEECCEEc-CCCCEeCCCCEEEEE
Confidence 68999988 589999999999986
No 65
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=41.81 E-value=9.1 Score=39.58 Aligned_cols=32 Identities=28% Similarity=0.276 Sum_probs=23.1
Q ss_pred chhHHHHHHHHHHHH----cC-----CC----HHHHHHHhhhccc
Q 011341 7 PYLLHCVETAMLLAA----IG-----AN----STVVAAGLLHDTL 38 (488)
Q Consensus 7 Pyi~H~l~VA~iLa~----lg-----~D----~~~i~AALLHDvv 38 (488)
.-++|.++|+.+... ++ ++ .-+.+||||||+=
T Consensus 55 tRf~HSLgV~~la~~l~~~l~~~~~~~~~~d~~~~~~AaLlHDiG 99 (410)
T 2q14_A 55 TRFQHSLGAFYLMSEAITQLTSKGNFIFDSEAEAVQAAILLHDIG 99 (410)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTTT
T ss_pred CeeehHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC
Confidence 457999999986653 33 23 3467899999984
No 66
>4a5p_A Protein MXIA, protein VIRH; protein transport, type three secretion, export apparatus; HET: MLY; 3.15A {Shigella flexneri}
Probab=40.98 E-value=84 Score=32.06 Aligned_cols=193 Identities=10% Similarity=0.139 Sum_probs=111.3
Q ss_pred CCHHHHHHHhhhccccccC---CCHHHHH---hHhhHHHHHHHHHhccccccchHHhhcccccchHHHHHHHHHHh---h
Q 011341 24 ANSTVVAAGLLHDTLDDAF---LSYDYIF---RTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFL---A 94 (488)
Q Consensus 24 ~D~~~i~AALLHDvvEDt~---~t~eel~---~~FG~~Va~lV~~vTk~~~~~~~~r~~~~~~~~~~~e~lRkmll---a 94 (488)
.|+.+++|.-|..++.... ++.+|++ +..+++=-.||+.+.+.-.+.. -.+-+|.+|- +
T Consensus 173 vd~~tViaTHLsevik~~a~ellg~QEvq~LLd~L~~~~P~LVeEl~~~l~l~~------------i~~VLq~LL~E~Vs 240 (383)
T 4a5p_A 173 XSAQDEFYHQLSQALLNNINEIFGIQETKNMLDQFENRYPDLLXEVFRHVTIQR------------ISEVLQRLLGENIS 240 (383)
T ss_dssp BCHHHHHHHHHHHHHHTTGGGTSCHHHHHHHHHHHHTTCHHHHHHHHTTCCHHH------------HHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHHHhHHHHhCHHHHHHHHHHHHHhChHHHHHHHccCCHHH------------HHHHHHHHHhCCCC
Confidence 4899999998888887643 5555543 3344444556666643222221 1234555543 2
Q ss_pred cCCchhhHHHHhhHHhhhccccCCChHHHHHHHHHHHHHhhhhhcccChhhHHHHHHhhhhhccCcchHHHHHHHHHhhh
Q 011341 95 MADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECF 174 (488)
Q Consensus 95 ~~D~rvvlIKLADRLhNmrtl~~~~~~k~~~~A~Etl~iyaPLA~rLGi~~ik~ELedl~f~~l~p~~y~~i~~~l~~~~ 174 (488)
+.|.|.++=-|||.-..-+....+.+.-|.++++....=|++- ..|-+..+-.++|++....+....--. .-.|.-..
T Consensus 241 IRdlrtIlEtLae~a~~~kD~~~LtE~VR~aL~R~I~~~~~~~-~~L~vi~L~p~lE~~l~~si~~t~~g~-~laL~P~~ 318 (383)
T 4a5p_A 241 VRNLKLIMESLALWAPREXDVITLVEHVRASLSRYICSKIAVS-GEIXVVMLSGYIEDAIRXGIRQTSGGS-FLNMDIEV 318 (383)
T ss_dssp CSCHHHHHHHHHHHTTTCCCHHHHHHHHHHHTHHHHHHHHCBT-TEEEEEECCHHHHHHHHHTEECC-------CCEECC
T ss_pred cccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCCC-CeEEEEEeCHHHHHHHHHHhcccCCCC-ccCCCHHH
Confidence 3489998888888776666655566666888888876666665 667788888899987666554321100 00011111
Q ss_pred hHHHHHHHHHHHHHHHHhcCCceeeeeccccChHHHHHHHhhcCC------CCCCCCcceEEEEE
Q 011341 175 DEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKL------TMDEIHDIYGLRLI 233 (488)
Q Consensus 175 ~~~~i~~~~~~l~~~L~~~gi~~~~v~~R~K~~~Si~~K~~rk~~------~~~~i~Dl~giRIi 233 (488)
-+..++.+.+.+++ ....|...--+++- .+=...+|+.++.. ++.||.+=.-++++
T Consensus 319 ~~~l~~~l~~~~~~-~~~~g~~pVLLts~--~iR~~lrrlle~~~p~l~VLS~~EI~~~~~i~~v 380 (383)
T 4a5p_A 319 SDEVMETLAHALRE-LRNAXXNFVLLVSV--DIRRFVXRLIDNRFXSILVISYAEIDEAYTINVL 380 (383)
T ss_dssp CHHHHHHHHHHHHH-HHSSSCCCEEEECT--TTHHHHHHHHHTTCSSSCEEETTSCCSSCEEEEE
T ss_pred HHHHHHHHHHHHHH-HHhccCCeEEEcCH--HHHHHHHHHHHHhcCCceEEeHHHcCCCCceEEE
Confidence 22344444444443 22345543224332 23356777777653 47888887777765
No 67
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=40.39 E-value=11 Score=33.29 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=20.3
Q ss_pred ccccCCcccCCCCCccCCCCEEEEe
Q 011341 424 RPRLNHKAVGDPRCKLKMGDVVELT 448 (488)
Q Consensus 424 ~akvN~~~v~~l~~~L~~GD~VeIi 448 (488)
|..|||+.| .-.+.|++||+|.|=
T Consensus 111 gt~VNG~~i-~~~~~L~~GD~I~~G 134 (154)
T 4ejq_A 111 DTYVNGKKV-TEPSILRSGNRIIMG 134 (154)
T ss_dssp CEEETTEEC-CSCEECCTTCEEEET
T ss_pred ceEECCEEc-CCceECCCCCEEEEC
Confidence 578999998 367899999999874
No 68
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=40.18 E-value=1.4e+02 Score=27.39 Aligned_cols=102 Identities=20% Similarity=0.260 Sum_probs=54.1
Q ss_pred hHhhHHHHHHHHHhccccccchHHhhcccccchHHHHHHHHHHhhcCCchhhHHHHhhHHhhhcc-ccCCChHH------
Q 011341 50 RTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMT-LDALPLCK------ 122 (488)
Q Consensus 50 ~~FG~~Va~lV~~vTk~~~~~~~~r~~~~~~~~~~~e~lRkmlla~~D~rvvlIKLADRLhNmrt-l~~~~~~k------ 122 (488)
+.+|.+|..+|..+.+.... +.|+.+.-....+--+|..|+-||..... |...+.++
T Consensus 46 ~~lG~~vea~V~~~c~P~E~----------------eKy~~FigDLekVv~LLLsLs~RLaRvenaL~~~~~Er~sL~~K 109 (190)
T 3thf_A 46 DRLGQDLFAKLAEKVRPSEA----------------SKFRTHVDAVGNITSLLLSLSERLAQTESSLETRQQERGALESK 109 (190)
T ss_dssp HHHHHHHHHHHHHHSCHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHhhHHHH----------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHccChhHHHHHHHH
Confidence 57999999999998776543 44442211111244567888888877664 33222221
Q ss_pred HHHHHHHHHHHhhhhhccc--ChhhHHHHHHhhhhhccCcchHHHHHHHHHh
Q 011341 123 RQRFAKETLEIFVPLANRL--GISTWKVQLENLCFKHLNPDQHTELSSKLVE 172 (488)
Q Consensus 123 ~~~~A~Etl~iyaPLA~rL--Gi~~ik~ELedl~f~~l~p~~y~~i~~~l~~ 172 (488)
+..+.+..-+ |..| .+..=-..+-.+-.+||.++++..-...+..
T Consensus 110 ~~~L~~Q~ED-----AkeLKe~ldRRe~~V~~iL~~~L~~eql~DY~~fv~m 156 (190)
T 3thf_A 110 RDLLYEQMEE-----AQRLKSDIERRGVSIAGLLAKNLSADMCADYDYFINM 156 (190)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1111111111 2222 1122223355667789999987655554443
No 69
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A*
Probab=39.03 E-value=11 Score=39.86 Aligned_cols=31 Identities=26% Similarity=0.248 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHcC----------------CCH----HHHHHHhhhccc
Q 011341 8 YLLHCVETAMLLAAIG----------------ANS----TVVAAGLLHDTL 38 (488)
Q Consensus 8 yi~H~l~VA~iLa~lg----------------~D~----~~i~AALLHDvv 38 (488)
-++|.++|+.+...++ .+. -+.+||||||+=
T Consensus 87 Rf~HSLgV~~la~~i~~~l~~~~~~~~~~~~~~~~~~~~~v~~AaLlHDIG 137 (480)
T 3irh_A 87 RFSHSLGVYEITRRICEIFQRNYSVERLGENGWNDDERLITLCAALLHDVG 137 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSBHHHHGGGSBCGGGHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCccccccccCCCHHHHHHHHHHHHHhccC
Confidence 3799999998664321 222 246899999983
No 70
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=37.64 E-value=29 Score=31.46 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=26.8
Q ss_pred cchhHHHHHHHHH---HHH-cCCCH----HHHHHHhhhccccc
Q 011341 6 DPYLLHCVETAML---LAA-IGANS----TVVAAGLLHDTLDD 40 (488)
Q Consensus 6 ~Pyi~H~l~VA~i---La~-lg~D~----~~i~AALLHDvvED 40 (488)
+.--.|...||.+ |+. .|+|. .++..||+||+.|-
T Consensus 37 EsVAeHS~~vA~iA~~la~~~~vd~~~~~r~~~maL~HDl~E~ 79 (173)
T 1ynb_A 37 ESVAEHNFRAAIIAFILALKSGESVEKACKAATAALFHDLHEA 79 (173)
T ss_dssp CBHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTHH
T ss_pred CcHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHcchHHh
Confidence 5667899999986 554 46776 46778999999883
No 71
>3a5i_A Flagellar biosynthesis protein FLHA; four domains, thioredoxin-like fold, bacterial flagellum BIO bacterial flagellum protein export; 2.80A {Salmonella typhimurium}
Probab=37.30 E-value=90 Score=31.91 Aligned_cols=182 Identities=16% Similarity=0.235 Sum_probs=107.4
Q ss_pred CHHHHHHHhhhccccccC---CCHHHHH---hHhhHHHHHHHHHhc-cccccchHHhhcccccchHHHHHHHHHHh---h
Q 011341 25 NSTVVAAGLLHDTLDDAF---LSYDYIF---RTFGAGVADLVEGVS-KLSQLSKLARENNTASKTVEADRLHTMFL---A 94 (488)
Q Consensus 25 D~~~i~AALLHDvvEDt~---~t~eel~---~~FG~~Va~lV~~vT-k~~~~~~~~r~~~~~~~~~~~e~lRkmll---a 94 (488)
|+.+++|.-|..++.... ++.+|++ +..+++=-.||+.+. +.-.+.. -.+-+|.+|- +
T Consensus 180 d~~tViaTHLsevi~~~a~ellg~qEvq~LLd~L~~~~p~LVeEl~p~~l~l~~------------i~~VLq~LL~E~Vs 247 (389)
T 3a5i_A 180 EASTVVATHLNHLIGQFSAELFGRQEAQQLLDRVSQEMPKLTEDLVPGVVTLTT------------LHKVLQNLLAEKVP 247 (389)
T ss_dssp EHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHTTCHHHHHTTTTTTSCHHH------------HHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHHHhHHHHhCHHHHHHHHHHHHHHChHHHHHhccCCcCHHH------------HHHHHHHHHhCCCC
Confidence 888999888888877643 4544433 344555555666653 3222221 1234555543 3
Q ss_pred cCCchhhHHHHhhHHhhhccccCCChHHHHHHHHHHHHHhhhhhcccChhhHHHHHHhhhhhc------cCcchHHHHHH
Q 011341 95 MADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKH------LNPDQHTELSS 168 (488)
Q Consensus 95 ~~D~rvvlIKLADRLhNmrtl~~~~~~k~~~~A~Etl~iyaPLA~rLGi~~ik~ELedl~f~~------l~p~~y~~i~~ 168 (488)
+.|.|.++=-|||.-..-+....+.+.-|.++++....=|++-...|-+..|-.++|++...- |+|+..+.+
T Consensus 248 IRdlrtIlEaLae~a~~~kD~~~LtE~VR~aL~R~I~~~~~~~~~~L~vi~L~p~lE~~l~~si~qt~GL~P~~~~~l-- 325 (389)
T 3a5i_A 248 IRDMRTILETLAEHAPLQSDPHELTAVVRVALGRAITQQWFPGNEEVQVIGLDTALERLLLQALQGGGGLEPGLADRL-- 325 (389)
T ss_dssp CCCHHHHHHHHHHHGGGCCCHHHHHHHHHHHTHHHHHHHHSCTTCCEECBCCCTTHHHHHHHHHHSSSCCCTTHHHHH--
T ss_pred cccHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCHHHHHHHHHHhcccCCCCHHHHHHH--
Confidence 349999999999987766666566666788888888877777667787887777777654431 233333332
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHhcCCceeeeeccccChHHHHHHHhhcCC------CCCCCCcceEEEEE
Q 011341 169 KLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKL------TMDEIHDIYGLRLI 233 (488)
Q Consensus 169 ~l~~~~~~~~i~~~~~~l~~~L~~~gi~~~~v~~R~K~~~Si~~K~~rk~~------~~~~i~Dl~giRIi 233 (488)
++.+...+++. ...|...--++ .-.+=...+|+.++.. ++.+|.+-..++++
T Consensus 326 ----------~~~l~~~~~~~-~~~g~~pVLL~--s~~iR~~lr~lle~~~p~l~VLS~~EI~~~~~I~~v 383 (389)
T 3a5i_A 326 ----------LAQTQEALSRQ-EMLGAPPVLLV--NHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMT 383 (389)
T ss_dssp ----------HHHHHHHHHHH-HHHTCCCEEEE--CTTTHHHHHHHHTTTCTTCEEEETTTSCTTCCEECC
T ss_pred ----------HHHHHHHHHHH-HhcCCCeEEEe--CHHHHHHHHHHHHHHCCCCEEEehHhcCCCCeeEEE
Confidence 22222233322 23354432244 2334456778877654 46888776666543
No 72
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=36.59 E-value=15 Score=30.89 Aligned_cols=24 Identities=8% Similarity=0.185 Sum_probs=19.9
Q ss_pred ccccCCcccCCCCCccCCCCEEEEe
Q 011341 424 RPRLNHKAVGDPRCKLKMGDVVELT 448 (488)
Q Consensus 424 ~akvN~~~v~~l~~~L~~GD~VeIi 448 (488)
|..|||+.+. -.+.|++||+|.|=
T Consensus 81 gt~vNg~~i~-~~~~L~~GD~I~iG 104 (120)
T 1wln_A 81 ETYVDGQRIS-ETTMLQSGMRLQFG 104 (120)
T ss_dssp CEEETSCBCS-SCEEECTTCEEEET
T ss_pred CEEECCEEcC-CCEECCCCCEEEEC
Confidence 5689999984 56799999999874
No 73
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=36.52 E-value=27 Score=34.50 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=24.0
Q ss_pred Ccch-hHHHHHHHHHHH----HcCCCH----H-HHHHHhhhccc
Q 011341 5 GDPY-LLHCVETAMLLA----AIGANS----T-VVAAGLLHDTL 38 (488)
Q Consensus 5 G~Py-i~H~l~VA~iLa----~lg~D~----~-~i~AALLHDvv 38 (488)
..|| ..|.+.||.+.. .+|++. . ...||||||+=
T Consensus 163 ~~~~~~~Hs~~Va~la~~la~~lgl~~~~~~~~l~~aaLLHDIG 206 (328)
T 3tm8_A 163 TDKTISHHGVTVSTLSIALAQKLGITDPKKTQLLTLGALLHDYG 206 (328)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTGG
T ss_pred cCchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHhcCC
Confidence 3455 479999998553 567764 3 45699999984
No 74
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens}
Probab=35.83 E-value=13 Score=39.72 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHc-----------CCCH----HHHHHHhhhccc
Q 011341 8 YLLHCVETAMLLAAI-----------GANS----TVVAAGLLHDTL 38 (488)
Q Consensus 8 yi~H~l~VA~iLa~l-----------g~D~----~~i~AALLHDvv 38 (488)
-++|.++|+.+...+ +.+. -+.+||||||+=
T Consensus 66 Rf~HSLgV~~la~~i~~~l~~~~~~~~~~~~d~~~v~~AaLlHDiG 111 (528)
T 3u1n_A 66 RFEHSLGVGYLAGCLVHALGEKQPELQISERDVLCVQIAGLCHDLG 111 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCcccCCCHHHHHHHHHHHHHhccC
Confidence 479999999866433 2332 256799999974
No 75
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=33.85 E-value=14 Score=30.28 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=19.6
Q ss_pred ccccCCcccCCCCCccCCCCEEEEe
Q 011341 424 RPRLNHKAVGDPRCKLKMGDVVELT 448 (488)
Q Consensus 424 ~akvN~~~v~~l~~~L~~GD~VeIi 448 (488)
|..|||+.+. -...|++||+|.|=
T Consensus 70 Gt~vng~~i~-~~~~L~~Gd~i~~G 93 (106)
T 3gqs_A 70 GVIVEGRKIE-HQSTLSANQVVALG 93 (106)
T ss_dssp CCEETTEECS-SEEECCTTCCEEET
T ss_pred CeEECCEECC-CCeECCCCCEEEEC
Confidence 5689999884 45799999999873
No 76
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=30.98 E-value=30 Score=28.57 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=20.5
Q ss_pred ccccCCcccCC-CCCccCCCCEEEEee
Q 011341 424 RPRLNHKAVGD-PRCKLKMGDVVELTP 449 (488)
Q Consensus 424 ~akvN~~~v~~-l~~~L~~GD~VeIi~ 449 (488)
|..|||+.+.+ -.++|++||+|.|-.
T Consensus 69 Gt~vng~~l~~~~~~~L~~GD~i~~G~ 95 (116)
T 1lgp_A 69 GTVINKLKVVKKQTCPLQTGDVIYLVY 95 (116)
T ss_dssp CCCCCCCCCCCSSCCCCCTTCEEEEEC
T ss_pred CcEECCEEcCCCCcEECCCCCEEEEec
Confidence 56799998742 258999999999986
No 77
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=30.87 E-value=25 Score=31.29 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=21.0
Q ss_pred cccCCcccCCCCCccCCCCEEEEee
Q 011341 425 PRLNHKAVGDPRCKLKMGDVVELTP 449 (488)
Q Consensus 425 akvN~~~v~~l~~~L~~GD~VeIi~ 449 (488)
+.|||+.+...++.++.||+|+|-.
T Consensus 78 V~VNG~~v~~ps~~V~~gD~I~V~~ 102 (159)
T 1c05_A 78 ILVDGSRVNIPSYRVKPGQTIAVRE 102 (159)
T ss_dssp EEETTEECCCSSCBCCTTCEEEECG
T ss_pred EEECCEEeCcCCcEeCCCCEEEEeC
Confidence 6899998834899999999998864
No 78
>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, triphosphohydro PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis}
Probab=30.70 E-value=18 Score=37.85 Aligned_cols=30 Identities=33% Similarity=0.475 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHH----cCC---------------C-----HHHHHHHhhhccc
Q 011341 9 LLHCVETAMLLAA----IGA---------------N-----STVVAAGLLHDTL 38 (488)
Q Consensus 9 i~H~l~VA~iLa~----lg~---------------D-----~~~i~AALLHDvv 38 (488)
++|.++|+.+... ++. . .-+-+|||+||+=
T Consensus 66 ltHSL~V~~iar~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lv~~a~L~HDiG 119 (444)
T 3bg2_A 66 LTHSLEVSVVGRSLGRMVGKKLLEKYPHLEQVYGYKFNDFGAIVAAAALAHDIG 119 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTHHHHTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHhcccC
Confidence 7999999986542 211 1 2356899999973
No 79
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=30.66 E-value=27 Score=32.57 Aligned_cols=39 Identities=36% Similarity=0.414 Sum_probs=32.4
Q ss_pred HHHHHHHHcCC---CHHHHHHHhhhccccccCCCHHHHHhHhhHHH
Q 011341 14 ETAMLLAAIGA---NSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGV 56 (488)
Q Consensus 14 ~VA~iLa~lg~---D~~~i~AALLHDvvEDt~~t~eel~~~FG~~V 56 (488)
.|+.+|+++|. |.|.++ |++++......++|.+.||+++
T Consensus 24 tv~~~l~~~g~~vidaD~ia----~~l~~~~~~~~~~i~~~fG~~~ 65 (210)
T 4i1u_A 24 TVADLFAARGASLVDTDLIA----HRITAPAGLAMPAIEQTFGPAF 65 (210)
T ss_dssp HHHHHHHHTTCEEEEHHHHH----HHHTSTTCTTHHHHHHHHCGGG
T ss_pred HHHHHHHHCCCcEEECcHHH----HHHhcCCcHHHHHHHHHhChhh
Confidence 35778888885 777776 8888888889999999999985
No 80
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=28.59 E-value=21 Score=28.71 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=19.2
Q ss_pred ccccCCcccCCCCCccCCCCEEEEe
Q 011341 424 RPRLNHKAVGDPRCKLKMGDVVELT 448 (488)
Q Consensus 424 ~akvN~~~v~~l~~~L~~GD~VeIi 448 (488)
|..|||+.+. .++|++||++.|=
T Consensus 66 Gt~vng~~i~--~~~L~~gd~i~iG 88 (100)
T 3po8_A 66 GTTVNNAPVQ--EWQLADGDVIRLG 88 (100)
T ss_dssp CCEETTEECS--EEECCTTCEEEET
T ss_pred CEEECCEECc--eEECCCCCEEEEC
Confidence 5689999883 6899999999873
No 81
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=27.68 E-value=1.1e+02 Score=32.77 Aligned_cols=76 Identities=7% Similarity=-0.017 Sum_probs=41.9
Q ss_pred eEEecCCCCcHHHHHHHhcCCCCC-CCCCCC-C-Ccccc--ccccCCc-ccCCCCCccCCCCEEEEeeCCCCccHHHHHH
Q 011341 388 SVQEFPTSSTVMDLLERAGRGSSR-WSPYGF-P-LKEEL--RPRLNHK-AVGDPRCKLKMGDVVELTPAIPDKSLTEYRE 461 (488)
Q Consensus 388 ~~~~lp~GsT~~DfAy~i~~~~~~-~~~~g~-~-~~~~v--~akvN~~-~v~~l~~~L~~GD~VeIi~~~~~~~~~~~~~ 461 (488)
..+++|+|.|++|.|-.++-.+.. ++..+- . ...|- .+.|||+ +++.=.+++.+|.+|+ |.. ......|+
T Consensus 9 ~~v~v~~g~tiL~a~~~~gi~ip~lC~~~~~~~~~G~Cg~C~V~v~g~~~~~aC~t~v~~gm~V~--T~~--~~~~~~r~ 84 (574)
T 3c8y_A 9 VQFNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEVEGTGLVTACDTLIEDGMIIN--TNS--DAVNEKIK 84 (574)
T ss_dssp EEEEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEETTTEEEEGGGCBCCTTCEEE--SSC--HHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCcccCCCCEEEeCCCcccccCCCCcccceeEE--ecc--hhhhhhHH
Confidence 577899999999999988643211 110000 0 01121 2578998 5533457778887665 322 12334454
Q ss_pred HHHHHh
Q 011341 462 EIQRMY 467 (488)
Q Consensus 462 ~i~~~~ 467 (488)
.+.+++
T Consensus 85 ~~lell 90 (574)
T 3c8y_A 85 SRISQL 90 (574)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 82
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=26.72 E-value=30 Score=32.24 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=21.1
Q ss_pred cccCCcccCCCCCccCCCCEEEEee
Q 011341 425 PRLNHKAVGDPRCKLKMGDVVELTP 449 (488)
Q Consensus 425 akvN~~~v~~l~~~L~~GD~VeIi~ 449 (488)
+.|||+.|...++.++.||+|+|-.
T Consensus 126 V~VNG~~v~~ps~~V~~gD~I~V~~ 150 (209)
T 2vqe_D 126 ITVNGRRVDLPSYRVRPGDEIAVAE 150 (209)
T ss_dssp EEETTEECCCTTCBCCTTCEEEECG
T ss_pred EEECCEEeCcCCcCcCCCCEEEEcC
Confidence 5899998833899999999999864
No 83
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=26.60 E-value=33 Score=29.37 Aligned_cols=24 Identities=33% Similarity=0.696 Sum_probs=18.9
Q ss_pred cccccCCcccCCCC--CccCCCCEEEE
Q 011341 423 LRPRLNHKAVGDPR--CKLKMGDVVEL 447 (488)
Q Consensus 423 v~akvN~~~v~~l~--~~L~~GD~VeI 447 (488)
=|..|||+.++ .. ++|++||+|.+
T Consensus 94 NGT~vNg~ri~-~~~~~~L~~GD~I~~ 119 (130)
T 4h87_A 94 HGTFLNKTRIP-PRTYCRVHVGHVVRF 119 (130)
T ss_dssp SCEEETTEECC-TTCCEECCTTCEEEE
T ss_pred CceEECCEECC-CCceeECCCCCEEEE
Confidence 36789999884 43 57999999986
No 84
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=24.96 E-value=20 Score=33.55 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=20.9
Q ss_pred cccCCcccCCCCCccCCCCEEEEee
Q 011341 425 PRLNHKAVGDPRCKLKMGDVVELTP 449 (488)
Q Consensus 425 akvN~~~v~~l~~~L~~GD~VeIi~ 449 (488)
+.|||+.|...++.++.||+|+|-.
T Consensus 122 V~VNG~~V~~ps~~Vk~GD~I~V~~ 146 (205)
T 3r8n_D 122 IMVNGRVVNIASYQVSPNDVVSIRE 146 (205)
T ss_dssp CBSSSSBCCCTTCBCCTTBCCBCCS
T ss_pred EEECCEEEccCCcCcCCCCEEEecC
Confidence 5899998844799999999888764
No 85
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=24.87 E-value=27 Score=28.99 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=19.0
Q ss_pred cccCCcccC-CCCCccCCCCEEEEee
Q 011341 425 PRLNHKAVG-DPRCKLKMGDVVELTP 449 (488)
Q Consensus 425 akvN~~~v~-~l~~~L~~GD~VeIi~ 449 (488)
+.+||+.+. ...++|++||+++++.
T Consensus 66 ~~vng~~l~k~~~~~L~~GD~l~Ll~ 91 (102)
T 3kt9_A 66 TSIDSVVIGKDQEVKLQPGQVLHMVN 91 (102)
T ss_dssp CEETTEECCBTCEEEECTTCCEEEET
T ss_pred CeECCEEcCCCCeEEeCCCCEEEEcc
Confidence 456787662 2449999999999985
No 86
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=24.27 E-value=31 Score=32.14 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=21.0
Q ss_pred cccCCcccCCCCCccCCCCEEEEee
Q 011341 425 PRLNHKAVGDPRCKLKMGDVVELTP 449 (488)
Q Consensus 425 akvN~~~v~~l~~~L~~GD~VeIi~ 449 (488)
+.|||+.|...++.++.||+|+|-.
T Consensus 116 V~VNG~~V~~pS~~V~~gD~I~V~~ 140 (201)
T 3bbn_D 116 ILVNGRIVDIPSYRCKPQDTIMARD 140 (201)
T ss_dssp EEETTEECCCTTCBCCTTEEEEECS
T ss_pred EEeCCEEEeecceecCCCCEEEEcc
Confidence 5899998844799999999998864
No 87
>2pgs_A Putative deoxyguanosinetriphosphate triphosphohyd; deoxyguanosinetriphosphate triphsphohydrolase, pseudomonas S PV. phaseolicola 1448A; 2.35A {Pseudomonas syringae PV}
Probab=24.09 E-value=27 Score=36.48 Aligned_cols=30 Identities=30% Similarity=0.366 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHH----cCC--C-------------HHHHHHHhhhccc
Q 011341 9 LLHCVETAMLLAA----IGA--N-------------STVVAAGLLHDTL 38 (488)
Q Consensus 9 i~H~l~VA~iLa~----lg~--D-------------~~~i~AALLHDvv 38 (488)
++|.++|+.+... ++. . .-+-+|||+||+=
T Consensus 64 ~~Hsl~v~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~a~L~HDiG 112 (451)
T 2pgs_A 64 LTHSLEVSCVGRSLGMRVGETLRAALPDWCDPSDLGMVVQSACLAHDIG 112 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGGSCTTCCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHhhccC
Confidence 7999999987653 221 1 1466899999973
No 88
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=23.93 E-value=29 Score=28.83 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=19.3
Q ss_pred ccccCCcccCCC--CCccCCCCEEEEe
Q 011341 424 RPRLNHKAVGDP--RCKLKMGDVVELT 448 (488)
Q Consensus 424 ~akvN~~~v~~l--~~~L~~GD~VeIi 448 (488)
|..|||+.+. . .+.|++||+|.|=
T Consensus 77 GT~vng~~l~-~~~~~~L~~gd~i~lG 102 (118)
T 1uht_A 77 GTLLNSNALD-PETSVNLGDGDVIKLG 102 (118)
T ss_dssp CCEESSSBCC-TTCEEECCTTEEEEET
T ss_pred CeEECCEECC-CCCeEEcCCCCEEEEC
Confidence 5689999874 3 5889999999874
No 89
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=23.18 E-value=33 Score=31.30 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=19.3
Q ss_pred cccCCcccCCCCCccCCCCEEEEe
Q 011341 425 PRLNHKAVGDPRCKLKMGDVVELT 448 (488)
Q Consensus 425 akvN~~~v~~l~~~L~~GD~VeIi 448 (488)
+.|||+.| .-.+.|++||.|-+=
T Consensus 142 t~VNG~~I-~~~~~L~~GDrI~lG 164 (184)
T 4egx_A 142 TYVNGKKV-TEPSILRSGNRIIMG 164 (184)
T ss_dssp EEETTEEC-CSCEECCTTCEEEET
T ss_pred EEEcCEEc-cccEEcCCCCEEEEC
Confidence 56999999 478999999999653
No 90
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=22.85 E-value=22 Score=30.41 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=19.7
Q ss_pred cccccCCcccCCCCCccCCCCEEEEe
Q 011341 423 LRPRLNHKAVGDPRCKLKMGDVVELT 448 (488)
Q Consensus 423 v~akvN~~~v~~l~~~L~~GD~VeIi 448 (488)
=|..|||+.+. ...|++||+|.|=
T Consensus 82 NGT~vNg~~i~--~~~L~~GD~I~iG 105 (131)
T 3hx1_A 82 NGLMINGKKVQ--EHIIQTGDEIVMG 105 (131)
T ss_dssp SCEEETTEEES--EEECCTTCEEECS
T ss_pred CceEECCEEeE--eEECCCCCEEEEC
Confidence 36689999884 4999999999874
No 91
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=22.27 E-value=90 Score=24.21 Aligned_cols=67 Identities=13% Similarity=0.192 Sum_probs=38.5
Q ss_pred CEEEEEEeCCcceEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCC----CCCccCCCCEEEEeeC
Q 011341 376 PVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGD----PRCKLKMGDVVELTPA 450 (488)
Q Consensus 376 ~i~v~~~~~~~~~~~~lp~GsT~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~----l~~~L~~GD~VeIi~~ 450 (488)
+|+|.+..|..+ .++++..+|+.|+--.|....+.. -....-..+|+...+ -++-+++|++|.++..
T Consensus 11 ~i~v~~~~G~~~-~l~v~~~~TV~~LK~~I~~~~gip-------~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r 81 (88)
T 1sif_A 11 QLFIKTLTGKTF-TVEMEPSDTIENLKAKIQDKEGIP-------PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 81 (88)
T ss_dssp EEEEEETTSCEE-EEECCTTSBHHHHHHHHHHHHCCC-------GGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-
T ss_pred EEEEEeCCCCEE-EEEECCCChHHHHHHHHHHHHCcC-------hhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 455555555433 578999999999998774332111 011112234443311 3567889999988753
No 92
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=21.91 E-value=39 Score=29.01 Aligned_cols=25 Identities=4% Similarity=0.102 Sum_probs=19.0
Q ss_pred ccccCCccc---CCCCCccCCCCEEEEe
Q 011341 424 RPRLNHKAV---GDPRCKLKMGDVVELT 448 (488)
Q Consensus 424 ~akvN~~~v---~~l~~~L~~GD~VeIi 448 (488)
|..|||+.+ |.-.+.|++||+|.|=
T Consensus 90 GT~vNg~~i~l~~~~~~~L~~GD~I~lG 117 (132)
T 3va4_A 90 GTQIVKPPRVLPPGVSHRLRDQELILFA 117 (132)
T ss_dssp CEEETTTTEEECTTCCEECCTTCEEEET
T ss_pred CeEECCEEcccCCCCEEECCCCCEEEEC
Confidence 568999864 2245789999999874
No 93
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=21.74 E-value=26 Score=29.55 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=20.2
Q ss_pred cccccCCcccCCCCCccCCCCEEEEe
Q 011341 423 LRPRLNHKAVGDPRCKLKMGDVVELT 448 (488)
Q Consensus 423 v~akvN~~~v~~l~~~L~~GD~VeIi 448 (488)
=|..|||+.+. -...|++||+|.|=
T Consensus 75 nGt~vNg~~i~-~~~~L~~Gd~i~iG 99 (128)
T 1r21_A 75 NPTQVNGSVID-EPVRLKHGDVITII 99 (128)
T ss_dssp SCCEETTEECS-SCEECCTTEEEECS
T ss_pred CCEEECCEECC-CcEEcCCCCEEEEC
Confidence 35689999884 56899999999875
No 94
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=21.06 E-value=31 Score=30.14 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=19.5
Q ss_pred ccccCCcccCCC-CCccCCCCEEEEe
Q 011341 424 RPRLNHKAVGDP-RCKLKMGDVVELT 448 (488)
Q Consensus 424 ~akvN~~~v~~l-~~~L~~GD~VeIi 448 (488)
|..|||+.+. . ...|++||+|.|=
T Consensus 88 GT~VNg~~i~-~~~~~L~~GD~I~lG 112 (151)
T 2jqj_A 88 GTFINGNRLV-KKDYILKNGDRIVFG 112 (151)
T ss_dssp CEEETTEECC-SSCEEECSSEEEEET
T ss_pred CeEECCEEcC-CCceECCCCCEEEEC
Confidence 5689999884 4 4899999999885
No 95
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=20.88 E-value=53 Score=31.64 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHcC--C---C-HHHHHHHhhhccc
Q 011341 8 YLLHCVETAMLLAAIG--A---N-STVVAAGLLHDTL 38 (488)
Q Consensus 8 yi~H~l~VA~iLa~lg--~---D-~~~i~AALLHDvv 38 (488)
++.|.+.||.+...+. + + .....||||||+=
T Consensus 125 ~~~hs~~va~~a~~la~~~~~~~~e~a~~aGLLHDIG 161 (297)
T 1vqr_A 125 FLKTCNEEATFIANWLNDEDKKLSHLLVPCAMLLRLG 161 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHcc
Confidence 6789999888766542 1 2 3577899999983
No 96
>1v1c_A Obscurin; muscle, sarcomere, adapter, myogenesis, SH3-domain; NMR {Homo sapiens}
Probab=20.86 E-value=44 Score=25.96 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=12.8
Q ss_pred CCCccCCCCEEEEee
Q 011341 435 PRCKLKMGDVVELTP 449 (488)
Q Consensus 435 l~~~L~~GD~VeIi~ 449 (488)
-+-.|+.||+|||+.
T Consensus 22 ~ei~lk~Gd~VeVl~ 36 (71)
T 1v1c_A 22 DAITLREGQYVEVLD 36 (71)
T ss_dssp TBCCBCTTCEEEEEE
T ss_pred ceeeecCCCEEEEEE
Confidence 356799999999997
No 97
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=20.74 E-value=43 Score=28.25 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=20.0
Q ss_pred ccccCCcccCC-CCCccCCCCEEEEee
Q 011341 424 RPRLNHKAVGD-PRCKLKMGDVVELTP 449 (488)
Q Consensus 424 ~akvN~~~v~~-l~~~L~~GD~VeIi~ 449 (488)
|..|||+.+.+ -.++|++||+|.|=.
T Consensus 80 GT~vNg~~l~~~~~~~L~~Gd~I~lG~ 106 (127)
T 1g6g_A 80 GTWLNGQKVEKNSNQLLSQGDEITVGV 106 (127)
T ss_dssp CCEETTEECCTTCCEECCTTCEEEECT
T ss_pred CeEECCEEcCCCCeEEcCCCCEEEECC
Confidence 46799998741 248999999998864
No 98
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=20.54 E-value=33 Score=28.43 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=19.6
Q ss_pred cccccCCcccCCCCCccCCCCEEEEe
Q 011341 423 LRPRLNHKAVGDPRCKLKMGDVVELT 448 (488)
Q Consensus 423 v~akvN~~~v~~l~~~L~~GD~VeIi 448 (488)
=|..|||+.+. .+.|++||+|.|=
T Consensus 73 nGt~vng~~i~--~~~L~~gd~i~iG 96 (115)
T 2xt9_B 73 NGTYVNREPVD--SAVLANGDEVQIG 96 (115)
T ss_dssp SCEEETTEECS--EEEECTTCEEEET
T ss_pred CCeEECCEEcc--eEECCCCCEEEEC
Confidence 35689999883 6899999999884
No 99
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=20.22 E-value=42 Score=28.77 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=20.9
Q ss_pred cccccCCcccCCC--CCccCCCCEEEEee
Q 011341 423 LRPRLNHKAVGDP--RCKLKMGDVVELTP 449 (488)
Q Consensus 423 v~akvN~~~v~~l--~~~L~~GD~VeIi~ 449 (488)
=|..|||+.+. . .+.|++||+|.|=.
T Consensus 75 NGT~vNg~~l~-~~~~~~L~~GD~I~lG~ 102 (138)
T 2pie_A 75 NGVWLNRARLE-PLRVYSIHQGDYIQLGV 102 (138)
T ss_dssp SCEEETTEECC-TTCCEECCTTCEEEESC
T ss_pred CCeEECCEEcC-CCCcEECCCCCEEEECC
Confidence 35689999874 4 48999999999875
No 100
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=20.00 E-value=32 Score=29.99 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=20.3
Q ss_pred ccccCCcccCC-CCCccCCCCEEEEee
Q 011341 424 RPRLNHKAVGD-PRCKLKMGDVVELTP 449 (488)
Q Consensus 424 ~akvN~~~v~~-l~~~L~~GD~VeIi~ 449 (488)
|..|||+.+.+ -.+.|++||+|.|-.
T Consensus 104 GT~VNg~~i~~~~~~~L~~GD~I~lG~ 130 (149)
T 1gxc_A 104 GTFVNTELVGKGKRRPLNNNSEIALSL 130 (149)
T ss_dssp CEEETTEECCTTCEEECCTTEEEEESS
T ss_pred CeEECCEECCCCCeEECCCCCEEEECC
Confidence 56899998731 368999999998864
Done!