BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>011344
MATLFLSSSFLLPLSSHKLWQWHPPRKHLSFTICCASSSSSNKSSSSSSSSSRSSRKVKS
NEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGF
NGFVAEKSLAGQDEKVANEVEDVSLSVEVSSVRDCFPSINTYPTVNSVDPDYMRIESSAN
SLLQETESSNLNCQNKNVNNSVENISLSTDVSFVKNPSKGSCIKTDLHSDIYSLPPTESL
SDPSFVGEVSPNLNGHYEKADMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFAT
VNHPLSEDHLGTGVEGADFDSSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLA
LSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWH
HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGI
CNNILRVI

High Scoring Gene Products

Symbol, full name Information P value
AT5G03420 protein from Arabidopsis thaliana 4.6e-57
AT5G39790 protein from Arabidopsis thaliana 1.9e-08
PRKAB1
5'-AMP-activated protein kinase subunit beta-1
protein from Sus scrofa 0.00043

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  011344
        (488 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2142669 - symbol:AT5G03420 "AT5G03420" species...   587  4.6e-57   1
TAIR|locus:2167067 - symbol:AT5G39790 "AT5G39790" species...   153  1.9e-08   1
UNIPROTKB|P80387 - symbol:PRKAB1 "5'-AMP-activated protei...    96  0.00043   1


>TAIR|locus:2142669 [details] [associations]
            symbol:AT5G03420 "AT5G03420" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002688 GO:GO:0016301 IPI:IPI00535342
            RefSeq:NP_195962.2 UniGene:At.4867 UniGene:At.54704
            ProteinModelPortal:F4KFB3 SMR:F4KFB3 PRIDE:F4KFB3
            EnsemblPlants:AT5G03420.1 GeneID:831846 KEGG:ath:AT5G03420
            OMA:SFNGWHH ArrayExpress:F4KFB3 Uniprot:F4KFB3
        Length = 598

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 154/342 (45%), Positives = 200/342 (58%)

Query:   157 PSINTY--PTVNSVDPDYMRIES-SANSLLQETESSNL-NCQNKNVNNSVENISLSTDVS 212
             P+ N Y  P +NS+   ++ I + S+  L  E   +N+ N QN+ +++   N S S D S
Sbjct:   265 PTSNHYTSPDLNSIK--HVDIATGSSYDLTSENTMTNVENFQNQQIDDIAANRSGSADDS 322

Query:   213 FVKNPSKGSCIKTDLHSDIYSLPP-TESLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQ 271
              V+  S+ +   + L S   S+   T       ++  V  + N    ++  EE  +   +
Sbjct:   323 LVE--SEDNDWMSGLSSCTSSIEEKTTRFIQNGYLDTVGADENDIPNESCPEES-SETTK 379

Query:   272 NGDL--DIIED-RAMI--LNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSS-EAR 325
              G+   D +   R M   LNGSAL  K+I     VN          G  G D D   E R
Sbjct:   380 GGEYIGDSLGGPRIMSTPLNGSALALKEIIHATEVNSSDRNSDQRDGSVGLDTDPHHETR 439

Query:   326 RRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEE 385
             +RENQ+EID L+FML QKE+ELSRLKEQIEKEKL+LSVLQ +A TEI KA+ LIS+K+ E
Sbjct:   440 KRENQVEIDRLRFMLDQKELELSRLKEQIEKEKLSLSVLQRQAETEIQKAQMLISEKEVE 499

Query:   386 LIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDXXXXXXXXXXXXXXXXXLW 445
             L  AEESLSGL+ V I+Y GDG  VEV GSFNGW HR+ M+                  W
Sbjct:   500 LQEAEESLSGLQEVVIEYCGDGNAVEVTGSFNGWQHRVGMELQASKSIGKQK------CW 553

Query:   446 STVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRV 487
             ST+LWLYPGTYEIKFIVDGQW  DPQ++SVT+G I NNIL+V
Sbjct:   554 STLLWLYPGTYEIKFIVDGQWITDPQKDSVTRGHISNNILKV 595

 Score = 204 (76.9 bits), Expect = 2.4e-13, P = 2.4e-13
 Identities = 76/280 (27%), Positives = 125/280 (44%)

Query:    62 EELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSS-TKPGF 120
             EEL +++ +F++  GL E HVPSMKELSAHGR DLANIVRRRGYKFI++L+ +S  +   
Sbjct:    63 EELRSEIMQFVALAGLPEGHVPSMKELSAHGRVDLANIVRRRGYKFIKELVANSGMEEDC 122

Query:   121 NGFVAEKSLAGQDEKVANXXXXXXXXXXXXXXRDCFPSINTYPTVNSVDPDYMRIESSAN 180
             N  VA+      ++   N               D         +++  +     + S  N
Sbjct:   123 NELVADS-----EDNNTNIETGGSRACLEDSSTDLSKEAEKQGSLSKDESSLAGVLSLEN 177

Query:   181 SLLQETESSNLNCQNKNVNNSVENISLSTDVSFVKNPSKGSCIKTDLHSDIY---SLPPT 237
             S     +S++     + +   +E++ L+ +++ ++N S  + +  +   D+Y   S P  
Sbjct:   178 SFSNLGDSNHSGEITEKIFK-IESVELN-EIADIENSSSEASVFANHSQDLYDTSSCPDI 235

Query:   238 E----SLSDPSFVGEV------------SPNLNGHYEKADMEE-KVANFIQNGDLDIIED 280
             E    S+++   V +V            SP  N HY   D+   K  +       D+  +
Sbjct:   236 EAGNVSMTEDEEVNDVDKDFSLTFDHYTSPTSN-HYTSPDLNSIKHVDIATGSSYDLTSE 294

Query:   281 RAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFD 320
               M  N     ++QI   A      ++D L   VE  D D
Sbjct:   295 NTMT-NVENFQNQQIDDIAANRSGSADDSL---VESEDND 330


>TAIR|locus:2167067 [details] [associations]
            symbol:AT5G39790 "AT5G39790" species:3702 "Arabidopsis
            thaliana" [GO:0009507 "chloroplast" evidence=IDA] [GO:0030247
            "polysaccharide binding" evidence=IDA] EMBL:CP002688 GO:GO:0009507
            GO:GO:0030247 GO:GO:0016301 IPI:IPI00528927 RefSeq:NP_568573.2
            UniGene:At.26168 ProteinModelPortal:F4KFV1 SMR:F4KFV1 PRIDE:F4KFV1
            DNASU:833975 EnsemblPlants:AT5G39790.1 GeneID:833975
            KEGG:ath:AT5G39790 OMA:EAMSMEY Uniprot:F4KFV1
        Length = 273

 Score = 153 (58.9 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 50/169 (29%), Positives = 84/169 (49%)

Query:   325 RRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQ-TKAVTEINKAEKLISDKD 383
             +R+E+  EI ++K  L   E+E+  L +  E E   L + Q ++ ++       L+S  D
Sbjct:   116 KRQEH--EITNIKTELALMELEVQALVKLAE-EIANLGIPQGSRKISGKYIQSHLLSRLD 172

Query:   384 EELIAAEESLSGLEV-----VEIQYSGDGEIVEVAGSFNGWHHRIKMDXXXXXXXXXXXX 438
                   +E + G+E      V + + G  E V+V GSF+GW  R  +             
Sbjct:   173 AVQKKMKEQIKGVEAAQSKEVHVFWIGMAESVQVMGSFDGWSQREDLSPEYSALFTK--- 229

Query:   439 XXXXXLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRV 487
                   +ST L+L PG YE+KF+VDG+W++ P+  +  +G + NN+L V
Sbjct:   230 ------FSTTLFLRPGRYEMKFLVDGEWQISPEFPTSGEGLMENNVLVV 272


>UNIPROTKB|P80387 [details] [associations]
            symbol:PRKAB1 "5'-AMP-activated protein kinase subunit
            beta-1" species:9823 "Sus scrofa" [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006633 "fatty acid biosynthetic process"
            evidence=IEA] GO:GO:0005634 CAZy:CBM48 eggNOG:NOG238368
            HOGENOM:HOG000230597 HOVERGEN:HBG050430 OrthoDB:EOG4G1MH4
            GO:GO:0006633 ProteinModelPortal:P80387 SMR:P80387 STRING:P80387
            ArrayExpress:P80387 Uniprot:P80387
        Length = 122

 Score = 96 (38.9 bits), Expect = 0.00043, P = 0.00043
 Identities = 34/125 (27%), Positives = 57/125 (45%)

Query:   371 EINKAEKLISDKDEELIAAEESLSGLEVVEIQ-------YSGDGEIVEVAGSFNGWHHRI 423
             ++  +E++ + + EE +A +  L   +    Q       ++G G+ V ++GSFN W    
Sbjct:    10 DLYHSEEIKAPEKEEFLAWQHDLEVNDKASAQARPTVFRWTGGGKEVYLSGSFNNWS--- 66

Query:   424 KMDXXXXXXXXXXXXXXXXXLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKG-GICN 482
             K+                   +  +L L  G ++ KF+VDGQW  DP    VT   G  N
Sbjct:    67 KLPLTRSHNN-----------FVAILDLPEGEHQYKFLVDGQWTHDPSEPVVTSQLGTVN 115

Query:   483 NILRV 487
             NI++V
Sbjct:   116 NIIQV 120


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.131   0.376    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      488       419   0.00082  118 3  11 23  0.45    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  264 KB (2141 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  48.94u 0.11s 49.05t   Elapsed:  00:00:02
  Total cpu time:  48.94u 0.11s 49.05t   Elapsed:  00:00:02
  Start:  Fri May 10 04:09:30 2013   End:  Fri May 10 04:09:32 2013

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