Query 011344
Match_columns 488
No_of_seqs 135 out of 813
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 00:18:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011344.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011344hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02859 AMPKbeta_GBD_like AMP- 99.9 1.6E-23 3.6E-28 169.8 9.4 78 396-486 1-79 (79)
2 cd02861 E_set_proteins_like E 99.7 4.9E-18 1.1E-22 137.3 8.9 76 397-485 2-81 (82)
3 KOG1616 Protein involved in Sn 99.6 4.2E-15 9E-20 147.1 7.8 83 396-488 79-162 (289)
4 cd02858 Esterase_N_term Estera 99.2 8E-11 1.7E-15 96.7 8.8 75 397-484 6-83 (85)
5 cd02688 E_set E or "early" set 98.8 1.8E-08 3.8E-13 77.8 7.9 70 397-478 4-75 (83)
6 cd02854 Glycogen_branching_enz 98.4 8.7E-07 1.9E-11 75.7 7.2 68 397-476 5-86 (99)
7 PF02922 CBM_48: Carbohydrate- 98.3 5.1E-07 1.1E-11 72.1 3.9 58 397-465 11-73 (85)
8 cd02860 Pullulanase_N_term Pul 97.7 0.00012 2.7E-09 61.1 7.7 68 398-479 9-88 (100)
9 cd05808 CBM20_alpha_amylase Al 97.7 0.00024 5.3E-09 58.3 8.8 63 398-472 2-78 (95)
10 PF00686 CBM_20: Starch bindin 97.6 0.00023 5.1E-09 59.1 7.6 58 397-462 2-68 (96)
11 cd02855 Glycogen_branching_enz 97.5 0.00074 1.6E-08 55.6 8.6 77 398-485 22-105 (106)
12 COG0296 GlgB 1,4-alpha-glucan 97.4 0.00023 5E-09 78.3 6.3 67 395-472 34-107 (628)
13 cd02856 Glycogen_debranching_e 97.3 0.00087 1.9E-08 56.5 7.1 53 398-464 10-66 (103)
14 cd05818 CBM20_water_dikinase P 97.2 0.0024 5.2E-08 53.5 8.8 67 397-476 2-80 (92)
15 PRK12313 glycogen branching en 97.1 0.0014 3E-08 71.2 8.5 65 397-473 38-109 (633)
16 PRK12568 glycogen branching en 97.1 0.0017 3.8E-08 72.6 8.9 68 395-475 136-211 (730)
17 cd05809 CBM20_beta_amylase Bet 97.1 0.0037 7.9E-08 52.9 8.8 71 396-475 2-87 (99)
18 cd05814 CBM20_Prei4 Prei4, N-t 97.0 0.0023 5E-08 55.8 7.3 55 398-462 2-66 (120)
19 cd05820 CBM20_novamyl Novamyl 97.0 0.0064 1.4E-07 51.9 9.8 70 396-477 2-90 (103)
20 cd05811 CBM20_glucoamylase Glu 97.0 0.0077 1.7E-07 50.8 9.8 74 396-477 6-93 (106)
21 PLN02447 1,4-alpha-glucan-bran 97.0 0.0015 3.2E-08 73.5 7.0 62 398-472 115-190 (758)
22 cd02852 Isoamylase_N_term Isoa 96.9 0.0027 5.9E-08 54.6 6.9 60 398-468 8-74 (119)
23 PRK14705 glycogen branching en 96.8 0.0036 7.7E-08 73.6 8.8 66 395-472 636-709 (1224)
24 PRK14706 glycogen branching en 96.8 0.0034 7.5E-08 69.1 8.2 67 396-475 37-111 (639)
25 cd05817 CBM20_DSP Dual-specifi 96.7 0.0054 1.2E-07 51.9 7.0 44 407-462 13-62 (100)
26 cd02853 MTHase_N_term Maltooli 96.6 0.0092 2E-07 48.7 7.6 73 397-485 8-82 (85)
27 cd05813 CBM20_genethonin_1 Gen 96.6 0.0089 1.9E-07 49.8 7.4 53 398-462 2-62 (95)
28 cd05467 CBM20 The family 20 ca 96.6 0.0097 2.1E-07 48.6 7.4 53 399-462 2-65 (96)
29 PRK05402 glycogen branching en 96.6 0.0071 1.5E-07 67.1 8.7 64 397-471 131-201 (726)
30 cd05807 CBM20_CGTase CGTase, C 96.6 0.02 4.3E-07 48.4 9.5 74 396-477 2-90 (101)
31 TIGR02402 trehalose_TreZ malto 96.5 0.0059 1.3E-07 65.7 7.1 70 399-485 1-73 (542)
32 cd05816 CBM20_DPE2_repeat2 Dis 96.4 0.036 7.7E-07 46.8 10.1 67 399-477 2-85 (99)
33 PLN02316 synthase/transferase 96.1 0.085 1.8E-06 61.6 14.1 64 394-464 326-398 (1036)
34 TIGR01515 branching_enzym alph 95.9 0.024 5.1E-07 61.9 8.1 67 397-475 28-102 (613)
35 cd05810 CBM20_alpha_MTH Glucan 95.7 0.061 1.3E-06 45.7 8.2 67 398-476 2-86 (97)
36 PRK05402 glycogen branching en 95.6 0.024 5.3E-07 63.0 6.8 62 398-472 29-95 (726)
37 cd05815 CBM20_DPE2_repeat1 Dis 94.8 0.084 1.8E-06 44.5 6.2 55 399-462 2-65 (101)
38 PF03423 CBM_25: Carbohydrate 94.5 0.092 2E-06 44.2 5.6 59 398-464 3-70 (87)
39 TIGR02104 pulA_typeI pullulana 94.2 0.14 3E-06 55.9 7.6 66 398-476 20-95 (605)
40 PLN02316 synthase/transferase 94.0 0.38 8.2E-06 56.4 11.2 58 394-462 488-557 (1036)
41 PRK10439 enterobactin/ferric e 92.9 0.48 1E-05 49.7 8.7 81 394-487 36-161 (411)
42 PF11806 DUF3327: Domain of un 92.7 0.69 1.5E-05 41.3 8.3 79 397-486 2-111 (122)
43 cd05806 CBM20_laforin Laforin 92.5 0.97 2.1E-05 40.3 9.0 56 402-462 10-74 (112)
44 PLN02950 4-alpha-glucanotransf 91.6 1.2 2.7E-05 51.6 10.8 70 396-477 152-237 (909)
45 TIGR02100 glgX_debranch glycog 90.2 0.68 1.5E-05 51.9 6.9 55 398-466 15-75 (688)
46 PLN02950 4-alpha-glucanotransf 88.4 2.5 5.4E-05 49.2 9.9 67 397-472 9-90 (909)
47 PLN02960 alpha-amylase 88.2 1.2 2.7E-05 51.6 7.3 59 398-463 129-198 (897)
48 TIGR02102 pullulan_Gpos pullul 87.7 1.3 2.9E-05 52.4 7.3 64 399-474 329-407 (1111)
49 PRK03705 glycogen debranching 85.3 1.6 3.6E-05 48.8 6.1 55 398-466 20-78 (658)
50 TIGR02103 pullul_strch alpha-1 85.2 2.2 4.9E-05 49.6 7.3 68 397-476 135-216 (898)
51 cd02857 CD_pullulan_degrading_ 83.0 6.3 0.00014 32.8 7.3 58 397-462 16-79 (116)
52 PRK14510 putative bifunctional 72.6 11 0.00023 45.5 7.7 56 397-466 23-84 (1221)
53 PLN03244 alpha-amylase; Provis 67.5 4.4 9.4E-05 47.1 3.0 58 400-463 135-201 (872)
54 PLN02877 alpha-amylase/limit d 55.4 27 0.00059 41.5 6.7 51 398-463 223-280 (970)
55 PF02903 Alpha-amylase_N: Alph 52.7 29 0.00063 30.1 4.9 67 398-472 22-100 (120)
56 KOG0470 1,4-alpha-glucan branc 51.1 18 0.00038 41.9 4.2 42 399-450 115-157 (757)
57 KOG2264 Exostosin EXT1L [Signa 46.5 23 0.0005 40.4 4.1 62 322-383 98-166 (907)
58 KOG3990 Uncharacterized conser 46.3 19 0.00041 37.3 3.2 30 330-359 231-260 (305)
59 PF10281 Ish1: Putative stress 45.9 35 0.00075 24.7 3.7 30 66-102 7-36 (38)
60 PF03370 CBM_21: Putative phos 43.3 1E+02 0.0022 27.0 6.8 68 398-465 22-99 (113)
61 PF01357 Pollen_allerg_1: Poll 42.6 43 0.00093 28.0 4.3 58 397-469 14-77 (82)
62 PF00392 GntR: Bacterial regul 41.3 29 0.00063 26.9 2.9 30 62-91 3-33 (64)
63 COG3794 PetE Plastocyanin [Ene 36.9 97 0.0021 28.7 5.9 51 395-459 60-111 (128)
64 cd01278 aprataxin_related apra 36.2 35 0.00076 28.4 2.8 34 77-111 42-75 (104)
65 smart00345 HTH_GNTR helix_turn 34.3 52 0.0011 23.8 3.2 30 64-93 1-31 (60)
66 TIGR03503 conserved hypothetic 32.9 89 0.0019 33.6 5.7 26 440-465 168-195 (374)
67 PF11896 DUF3416: Domain of un 32.7 67 0.0015 31.2 4.4 32 417-461 55-87 (187)
68 PRK00446 cyaY frataxin-like pr 32.1 1E+02 0.0022 27.4 5.1 27 442-472 57-83 (105)
69 PF07862 Nif11: Nitrogen fixat 32.0 33 0.00072 25.7 1.8 38 67-108 5-44 (49)
70 KOG1263 Multicopper oxidases [ 31.9 33 0.00071 38.4 2.5 24 441-464 96-120 (563)
71 COG1725 Predicted transcriptio 30.8 1.2E+02 0.0026 28.0 5.5 66 62-129 14-80 (125)
72 PRK10785 maltodextrin glucosid 29.8 1.9E+02 0.0041 32.2 7.8 61 397-465 21-87 (598)
73 PF08022 FAD_binding_8: FAD-bi 28.7 19 0.00041 30.7 0.0 12 19-36 47-58 (105)
74 PF07495 Y_Y_Y: Y_Y_Y domain; 27.9 56 0.0012 24.8 2.5 25 446-470 30-58 (66)
75 PF05751 FixH: FixH; InterPro 26.5 4.5E+02 0.0097 23.1 8.2 22 441-462 110-132 (146)
76 PF14347 DUF4399: Domain of un 23.6 1.2E+02 0.0027 26.1 4.0 33 441-474 49-81 (87)
77 TIGR02375 pseudoazurin pseudoa 22.1 2.6E+02 0.0056 25.2 5.9 16 397-412 23-38 (116)
78 TIGR02325 C_P_lyase_phnF phosp 22.0 1.1E+02 0.0024 28.8 3.8 31 61-91 10-41 (238)
79 TIGR02404 trehalos_R_Bsub treh 21.5 1.1E+02 0.0025 28.9 3.8 30 62-91 3-33 (233)
80 PF11797 DUF3324: Protein of u 21.0 3.6E+02 0.0078 24.5 6.7 23 450-472 102-127 (140)
81 KOG0045 Cytosolic Ca2+-depende 20.7 90 0.002 35.4 3.3 27 451-477 114-143 (612)
82 TIGR03337 phnR transcriptional 20.5 1.9E+02 0.004 27.1 4.9 32 62-93 4-36 (231)
No 1
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.90 E-value=1.6e-23 Score=169.80 Aligned_cols=78 Identities=35% Similarity=0.699 Sum_probs=71.5
Q ss_pred cEEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCEeeeCCCCCee
Q 011344 396 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV 475 (488)
Q Consensus 396 Lr~VtFtW~g~AkeV~LAGSFNNW~~~IpM~Kqpss~~~a~~gskksGvWsttL~LPPG~YEYKFIVDGeW~~DPdnPtV 475 (488)
+++|+|+|+++|++|+|+|+|++|++.++|.+. ..+ |++++.||||.|+|||+|||+|.+||+.|++
T Consensus 1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~------------~~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~ 67 (79)
T cd02859 1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKS------------GKG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTE 67 (79)
T ss_pred CeEEEEEEcCCCcEEEEEEEcCCCCccccceEC------------CCC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCcc
Confidence 368999999999999999999999988999975 334 9999999999999999999999999999999
Q ss_pred cc-CCccceEEE
Q 011344 476 TK-GGICNNILR 486 (488)
Q Consensus 476 tD-gGnvNNVLe 486 (488)
.+ .|+.||+|.
T Consensus 68 ~d~~G~~NN~i~ 79 (79)
T cd02859 68 TDDEGNVNNVID 79 (79)
T ss_pred CCCCCcEeeeEC
Confidence 87 699999984
No 2
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.75 E-value=4.9e-18 Score=137.32 Aligned_cols=76 Identities=39% Similarity=0.707 Sum_probs=67.4
Q ss_pred EEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCEee-eCCCCCe
Q 011344 397 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK-VDPQRES 474 (488)
Q Consensus 397 r~VtFtW~g~-AkeV~LAGSFNNW~~~IpM~Kqpss~~~a~~gskksGvWsttL~LPPG~YEYKFIVDGeW~-~DPdnPt 474 (488)
++|+|+|.++ ++.|+|+|+|++|+ .++|.+. .+|.|++++.|+||.|+|||+|||.|. +||.++.
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~------------~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~ 68 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMERE------------GDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAA 68 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCC-cccCEEC------------CCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCc
Confidence 4799999998 69999999999998 5789864 569999999999999999999999998 9999997
Q ss_pred ecc--CCccceEE
Q 011344 475 VTK--GGICNNIL 485 (488)
Q Consensus 475 VtD--gGnvNNVL 485 (488)
..+ .|+.|+||
T Consensus 69 ~~~~~~g~~n~v~ 81 (82)
T cd02861 69 YVDDGFGGKNAVF 81 (82)
T ss_pred eecCCCCccceEc
Confidence 664 37889887
No 3
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=99.57 E-value=4.2e-15 Score=147.12 Aligned_cols=83 Identities=39% Similarity=0.567 Sum_probs=75.4
Q ss_pred cEEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCEeeeCCCCCee
Q 011344 396 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV 475 (488)
Q Consensus 396 Lr~VtFtW~g~AkeV~LAGSFNNW~~~IpM~Kqpss~~~a~~gskksGvWsttL~LPPG~YEYKFIVDGeW~~DPdnPtV 475 (488)
..+|+|+|..+++.|+|.|+|++|...++|.+.. +..|.|.+++.|++|.|+|||+|||+|++|++.|++
T Consensus 79 ~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~----------~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta 148 (289)
T KOG1616|consen 79 GRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSG----------KNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTA 148 (289)
T ss_pred CCceEEEecCCCceEEEecccccccccccceecC----------CCcccceeeEecCCceEEEEEecCCceecCCCCccc
Confidence 4799999999999999999999999999988742 244559999999999999999999999999999999
Q ss_pred cc-CCccceEEEeC
Q 011344 476 TK-GGICNNILRVI 488 (488)
Q Consensus 476 tD-gGnvNNVLeVe 488 (488)
++ .|+.||+|.|.
T Consensus 149 ~d~~Gn~~N~i~v~ 162 (289)
T KOG1616|consen 149 EDSLGNLNNILEVQ 162 (289)
T ss_pred ccccCCcccceEec
Confidence 98 69999999984
No 4
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.20 E-value=8e-11 Score=96.68 Aligned_cols=75 Identities=25% Similarity=0.390 Sum_probs=63.7
Q ss_pred EEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEE-EeCCeeEEEEEEEcCEeeeCCCCCe
Q 011344 397 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVDGQWKVDPQRES 474 (488)
Q Consensus 397 r~VtFtW~g~-AkeV~LAGSFNNW~~~IpM~Kqpss~~~a~~gskksGvWsttL-~LPPG~YEYKFIVDGeW~~DPdnPt 474 (488)
..|+|+..++ |++|.|.|+|++|. .++|.++ +.|.|++++ .|.+|.|+|+|+|||.|+.||.++.
T Consensus 6 ~~v~F~vwAP~A~~V~L~~~~~~~~-~~~m~~~------------~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~ 72 (85)
T cd02858 6 RTVTFRLFAPKANEVQVRGSWGGAG-SHPMTKD------------EAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPT 72 (85)
T ss_pred CcEEEEEECCCCCEEEEEeecCCCc-cEeCeEC------------CCeEEEEEECCCCCcEEEEEEEECCeEecCCCCCc
Confidence 4789999887 99999999999886 4789875 579999998 4889999999999999999999999
Q ss_pred ecc-CCccceE
Q 011344 475 VTK-GGICNNI 484 (488)
Q Consensus 475 VtD-gGnvNNV 484 (488)
... .+..-|+
T Consensus 73 ~~~~~~~~~~~ 83 (85)
T cd02858 73 TKPGRQVDTSG 83 (85)
T ss_pred eeeccccccee
Confidence 874 4544443
No 5
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.82 E-value=1.8e-08 Score=77.76 Aligned_cols=70 Identities=30% Similarity=0.478 Sum_probs=60.3
Q ss_pred EEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCC-eeEEEEEEEcCEeeeCCCCCe
Q 011344 397 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP-GTYEIKFIVDGQWKVDPQRES 474 (488)
Q Consensus 397 r~VtFtW~g~-AkeV~LAGSFNNW~~~IpM~Kqpss~~~a~~gskksGvWsttL~LPP-G~YEYKFIVDGeW~~DPdnPt 474 (488)
..|+|++.++ ++.|.|.+.|++|...++|.+. ..|.|.+.+.+.. |.|.|+|+|||.|.+++.++.
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~------------~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~ 71 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKV------------EDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPK 71 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCCCCcccCEEC------------CCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChh
Confidence 4689999887 8999999999997667889864 5699999999887 999999999999999998866
Q ss_pred eccC
Q 011344 475 VTKG 478 (488)
Q Consensus 475 VtDg 478 (488)
..+.
T Consensus 72 ~~~~ 75 (83)
T cd02688 72 ADEG 75 (83)
T ss_pred hhcC
Confidence 6653
No 6
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.40 E-value=8.7e-07 Score=75.68 Aligned_cols=68 Identities=19% Similarity=0.379 Sum_probs=52.5
Q ss_pred EEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEEe--------CCe-eEEEEEEE-cC
Q 011344 397 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWL--------YPG-TYEIKFIV-DG 464 (488)
Q Consensus 397 r~VtFtW~g~-AkeV~LAGSFNNW~~~-IpM~Kqpss~~~a~~gskksGvWsttL~L--------PPG-~YEYKFIV-DG 464 (488)
..++|+..++ |+.|+|.|+||+|+.. .+|.|. ..|+|++++.. +.| .|.|.+.. ||
T Consensus 5 ~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~------------~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G 72 (99)
T cd02854 5 GGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKD------------EFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSG 72 (99)
T ss_pred CeEEEEEECCCCCEEEEEccCCCCCCcCcccEEC------------CCCEEEEEECCcccccccCCCCCEEEEEEEeCCC
Confidence 4688999887 9999999999999864 679874 58999999863 455 66666666 78
Q ss_pred Ee--eeCCCCCeec
Q 011344 465 QW--KVDPQRESVT 476 (488)
Q Consensus 465 eW--~~DPdnPtVt 476 (488)
+| +.||-.-.+.
T Consensus 73 ~~~~~~DPyA~~~~ 86 (99)
T cd02854 73 EWIDRIPAWIKYVT 86 (99)
T ss_pred CEEEEcCcceeEEE
Confidence 87 4677665544
No 7
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.32 E-value=5.1e-07 Score=72.08 Aligned_cols=58 Identities=28% Similarity=0.472 Sum_probs=46.7
Q ss_pred EEEEEEEecC-CceEEEEeeeCC-Cccc-cccCCCCCCCccccccccCCCcEEEEEE--eCCeeEEEEEEEcCE
Q 011344 397 EVVEIQYSGD-GEIVEVAGSFNG-WHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW--LYPGTYEIKFIVDGQ 465 (488)
Q Consensus 397 r~VtFtW~g~-AkeV~LAGSFNN-W~~~-IpM~Kqpss~~~a~~gskksGvWsttL~--LPPG~YEYKFIVDGe 465 (488)
..|+|+..++ |+.|.|.+.|++ |... ++|.+. ...|+|++++. +++|.++|+|.|+|.
T Consensus 11 ~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~-----------~~~G~w~~~~~~~~~~g~~~Y~y~i~~~ 73 (85)
T PF02922_consen 11 GGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRK-----------DDDGVWEVTVPGDLPPGGYYYKYRIDGD 73 (85)
T ss_dssp TEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEE-----------CTTTEEEEEEEGCGTTTT-EEEEEEEET
T ss_pred CEEEEEEECCCCCEEEEEEEeeecCCCceEEeeec-----------CCCCEEEEEEcCCcCCCCEEEEEEEEeC
Confidence 5789999887 999999999999 8654 789831 37899999998 888988888888754
No 8
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.74 E-value=0.00012 Score=61.05 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=52.4
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc-----cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCE-----
Q 011344 398 VVEIQYSGD-GEIVEVAGSFNGWH-----HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ----- 465 (488)
Q Consensus 398 ~VtFtW~g~-AkeV~LAGSFNNW~-----~~IpM~Kqpss~~~a~~gskksGvWsttL~-LPPG~YEYKFIVDGe----- 465 (488)
.+.|+..++ |+.|.|.. |++|. ..++|.+. ..|+|.+.+. +.+|.+ |+|.|+|.
T Consensus 9 ~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~------------~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~~ 74 (100)
T cd02860 9 KTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRG------------ENGVWSVTLDGDLEGYY-YLYEVKVYKGETN 74 (100)
T ss_pred CEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecC------------CCCEEEEEeCCccCCcE-EEEEEEEeceEEE
Confidence 588988887 99999988 88886 34678763 6899999986 566764 88888875
Q ss_pred eeeCCCCCeeccCC
Q 011344 466 WKVDPQRESVTKGG 479 (488)
Q Consensus 466 W~~DPdnPtVtDgG 479 (488)
...||-...+...|
T Consensus 75 ~~~DPyA~~~~~~~ 88 (100)
T cd02860 75 EVVDPYAKALSANG 88 (100)
T ss_pred EEcCcccEeEeeCC
Confidence 67888777666433
No 9
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.71 E-value=0.00024 Score=58.26 Aligned_cols=63 Identities=27% Similarity=0.556 Sum_probs=47.1
Q ss_pred EEEEEEec---CCceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---cC-
Q 011344 398 VVEIQYSG---DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG- 464 (488)
Q Consensus 398 ~VtFtW~g---~AkeV~LAGS---FNNW~~~--IpM~Kqpss~~~a~~gskksGvWsttL~LPPG-~YEYKFIV---DG- 464 (488)
+|+|..+. .|+.|+|+|+ +.+|+.. ++|... ..+.|++++.||+| .++|||++ +|
T Consensus 2 ~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~------------~~~~W~~~v~l~~~~~~eYKy~~~~~~~~ 69 (95)
T cd05808 2 AVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAA------------TYPVWSGTVDLPAGTAIEYKYIKKDGSGT 69 (95)
T ss_pred eEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCC------------CCCCEEEEEEeCCCCeEEEEEEEECCCCc
Confidence 56677654 3899999995 6899854 577642 56899999999987 79999996 23
Q ss_pred -EeeeCCCC
Q 011344 465 -QWKVDPQR 472 (488)
Q Consensus 465 -eW~~DPdn 472 (488)
.|-..++.
T Consensus 70 ~~WE~~~nr 78 (95)
T cd05808 70 VTWESGPNR 78 (95)
T ss_pred EEEecCCCE
Confidence 47665543
No 10
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.62 E-value=0.00023 Score=59.13 Aligned_cols=58 Identities=22% Similarity=0.446 Sum_probs=45.5
Q ss_pred EEEEEEEec---CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 011344 397 EVVEIQYSG---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 462 (488)
Q Consensus 397 r~VtFtW~g---~AkeV~LAGSFN---NW~~~--IpM~Kqpss~~~a~~gskksGvWsttL~LPPG-~YEYKFIV 462 (488)
+.|+|.... .++.|+|+|+.. +|+.. ++|.... +......|++++.||.| .++|||+|
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~--------~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNE--------GTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBES--------SSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhcccccccc--------CCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 578888855 489999999995 89963 6776531 01246899999999988 79999999
No 11
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=97.48 E-value=0.00074 Score=55.60 Aligned_cols=77 Identities=26% Similarity=0.352 Sum_probs=50.5
Q ss_pred EEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCe-eEEEEEEEc-CEe--eeCC
Q 011344 398 VVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVD-GQW--KVDP 470 (488)
Q Consensus 398 ~VtFtW~g~-AkeV~LAGSFNNW~~~-IpM~Kqpss~~~a~~gskksGvWsttL~-LPPG-~YEYKFIVD-GeW--~~DP 470 (488)
.++|+...+ |+.|.|.|+|++|... ++|.+. ...|.|.+.+. +++| .|.|++..+ |.| ..||
T Consensus 22 ~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~-----------~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DP 90 (106)
T cd02855 22 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRR-----------GDSGVWELFIPGLGEGELYKYEILGADGHLPLKADP 90 (106)
T ss_pred CEEEEEECCCCCEEEEEEECCCCCCcceecEEC-----------CCCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCC
Confidence 478888776 9999999999999643 578764 24899999885 6667 444444444 333 4566
Q ss_pred CCCeeccCCccceEE
Q 011344 471 QRESVTKGGICNNIL 485 (488)
Q Consensus 471 dnPtVtDgGnvNNVL 485 (488)
-..-++.....+.|+
T Consensus 91 Ya~~~~~~~~~~~~~ 105 (106)
T cd02855 91 YAFYSELRPGTASIV 105 (106)
T ss_pred CceeeEeCCCCeEEe
Confidence 554444333355553
No 12
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.41 E-value=0.00023 Score=78.30 Aligned_cols=67 Identities=25% Similarity=0.446 Sum_probs=52.6
Q ss_pred CcEEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCE-----ee
Q 011344 395 GLEVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ-----WK 467 (488)
Q Consensus 395 gLr~VtFtW~g~-AkeV~LAGSFNNW~~~IpM~Kqpss~~~a~~gskksGvWsttL~-LPPG~YEYKFIVDGe-----W~ 467 (488)
|...|.|+..++ ++.|.|.|+||+|+.. +|.... .++.|.|.+++. +++| +.|||.|++. ++
T Consensus 34 g~~~~~F~vWAP~a~~V~vvgdfn~w~~~-~~~~~~---------~~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~ 102 (628)
T COG0296 34 GVSGVRFRVWAPNARRVSLVGDFNDWDGR-RMPMRD---------RKESGIWELFVPGAPPG-TRYKYELIDPSGQLRLK 102 (628)
T ss_pred CCCceEEEEECCCCCeEEEEeecCCccce-eccccc---------CCCCceEEEeccCCCCC-CeEEEEEeCCCCceeec
Confidence 566899999887 9999999999999864 443321 136799999998 9999 9999999653 36
Q ss_pred eCCCC
Q 011344 468 VDPQR 472 (488)
Q Consensus 468 ~DPdn 472 (488)
.||-.
T Consensus 103 ~DP~a 107 (628)
T COG0296 103 ADPYA 107 (628)
T ss_pred cCchh
Confidence 67643
No 13
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.30 E-value=0.00087 Score=56.54 Aligned_cols=53 Identities=17% Similarity=0.272 Sum_probs=42.1
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcC
Q 011344 398 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG 464 (488)
Q Consensus 398 ~VtFtW~g~-AkeV~LAGSFNNW~--~~IpM~Kqpss~~~a~~gskksGvWsttL~-LPPG~YEYKFIVDG 464 (488)
.+.|+..++ |+.|.|.. |++|. ..++|.++ ..|+|.+.+. +.+|. .|+|.|||
T Consensus 10 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~------------~~GvW~~~v~~~~~g~-~Y~y~i~g 66 (103)
T cd02856 10 GCNFAVHSENATRIELCL-FDEDGSETRLPLTEE------------YGGVWHGFLPGIKAGQ-RYGFRVHG 66 (103)
T ss_pred CeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccc------------cCCEEEEEECCCCCCC-EEEEEECC
Confidence 478988887 99999998 66664 34688763 5799999984 67775 79999999
No 14
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=97.21 E-value=0.0024 Score=53.50 Aligned_cols=67 Identities=27% Similarity=0.447 Sum_probs=50.2
Q ss_pred EEEEEEEec---CCceEEEEeee---CCCccccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---cC--
Q 011344 397 EVVEIQYSG---DGEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG-- 464 (488)
Q Consensus 397 r~VtFtW~g---~AkeV~LAGSF---NNW~~~IpM~Kqpss~~~a~~gskksGvWsttL~LPPG-~YEYKFIV---DG-- 464 (488)
..|+|+.++ .|+.++|+|+- .+|+...+|.. ..+.|.+.+.||+| .++|||++ ||
T Consensus 2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~-------------~~~~W~~~~~l~~~~~ieyKy~~~~~~~~v 68 (92)
T cd05818 2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNW-------------TENGWVCDLELDGGELVEYKFVIVKRDGSV 68 (92)
T ss_pred EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCcccc-------------CCCCEEEEEEeCCCCcEEEEEEEEcCCCCE
Confidence 457777766 38999999988 59997677763 24579999999988 89999999 44
Q ss_pred EeeeCCCCCeec
Q 011344 465 QWKVDPQRESVT 476 (488)
Q Consensus 465 eW~~DPdnPtVt 476 (488)
.|...++.-...
T Consensus 69 ~WE~g~Nr~~~~ 80 (92)
T cd05818 69 IWEGGNNRVLEL 80 (92)
T ss_pred EEEeCCCEEEEc
Confidence 486666544333
No 15
>PRK12313 glycogen branching enzyme; Provisional
Probab=97.13 E-value=0.0014 Score=71.20 Aligned_cols=65 Identities=23% Similarity=0.354 Sum_probs=49.3
Q ss_pred EEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCe-eEEEEEEE-cCEe--eeC
Q 011344 397 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIV-DGQW--KVD 469 (488)
Q Consensus 397 r~VtFtW~g~-AkeV~LAGSFNNW~~~-IpM~Kqpss~~~a~~gskksGvWsttL~-LPPG-~YEYKFIV-DGeW--~~D 469 (488)
..|+|+..++ |++|+|.|+|++|... .+|.+. ..|+|.+++. +.+| .|.|++.+ ||.| ..|
T Consensus 38 ~gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~------------~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~D 105 (633)
T PRK12313 38 KGTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRR------------ESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKID 105 (633)
T ss_pred ccEEEEEECCCCCEEEEEEecCCCCccccccccc------------CCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCC
Confidence 4799999887 9999999999999865 578763 6799999997 5555 67777654 5776 456
Q ss_pred CCCC
Q 011344 470 PQRE 473 (488)
Q Consensus 470 PdnP 473 (488)
|-..
T Consensus 106 Pya~ 109 (633)
T PRK12313 106 PFAF 109 (633)
T ss_pred CceE
Confidence 5443
No 16
>PRK12568 glycogen branching enzyme; Provisional
Probab=97.09 E-value=0.0017 Score=72.61 Aligned_cols=68 Identities=26% Similarity=0.438 Sum_probs=52.4
Q ss_pred CcEEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEE---cCEee-
Q 011344 395 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV---DGQWK- 467 (488)
Q Consensus 395 gLr~VtFtW~g~-AkeV~LAGSFNNW~~~-IpM~Kqpss~~~a~~gskksGvWsttL~-LPPG~YEYKFIV---DGeW~- 467 (488)
|...|+|+..++ |+.|.|.|+||+|... .+|.+. ..|+|++.+. +.+| ..|||.| ||.+.
T Consensus 136 g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~------------~~GVWelfipg~~~G-~~YKYeI~~~~G~~~~ 202 (730)
T PRK12568 136 EVPGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQR------------IGGFWELFLPRVEAG-ARYKYAITAADGRVLL 202 (730)
T ss_pred CCCcEEEEEECCCCCEEEEEEecCCCCccceecccC------------CCCEEEEEECCCCCC-CEEEEEEEcCCCeEee
Confidence 445789999887 9999999999999864 678753 6899999984 7788 3577777 78764
Q ss_pred -eCCCCCee
Q 011344 468 -VDPQRESV 475 (488)
Q Consensus 468 -~DPdnPtV 475 (488)
.||-.-..
T Consensus 203 k~DPYA~~~ 211 (730)
T PRK12568 203 KADPVARQT 211 (730)
T ss_pred cCCCcceEe
Confidence 67754443
No 17
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=97.08 E-value=0.0037 Score=52.87 Aligned_cols=71 Identities=23% Similarity=0.335 Sum_probs=49.1
Q ss_pred cEEEEEEEec----CCceEEEEe---eeCCCcccc-ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---c
Q 011344 396 LEVVEIQYSG----DGEIVEVAG---SFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---D 463 (488)
Q Consensus 396 Lr~VtFtW~g----~AkeV~LAG---SFNNW~~~I-pM~Kqpss~~~a~~gskksGvWsttL~LPPG-~YEYKFIV---D 463 (488)
.++|+|.... .|+.|+|+| ++.+|+... +|.... ....+.|.+.+.||+| .++|||++ |
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~---------~~~~~~W~~~~~lp~~~~veyKyv~~~~~ 72 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYY---------NSHSNDWRGTVHLPAGRNIEFKAIKKSKD 72 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhcccc---------CCCCCCEEEEEEecCCCcEEEEEEEEcCC
Confidence 4688998843 389999999 557998541 233210 0245789999999999 89999999 4
Q ss_pred C---EeeeCCCCCee
Q 011344 464 G---QWKVDPQRESV 475 (488)
Q Consensus 464 G---eW~~DPdnPtV 475 (488)
| .|...++.-..
T Consensus 73 ~~~~~WE~g~nr~~~ 87 (99)
T cd05809 73 GTNKSWQGGQQSWYP 87 (99)
T ss_pred CCeeEEecCCCeeEE
Confidence 4 27665554333
No 18
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.02 E-value=0.0023 Score=55.77 Aligned_cols=55 Identities=24% Similarity=0.558 Sum_probs=43.6
Q ss_pred EEEEEEec----CCceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 011344 398 VVEIQYSG----DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 462 (488)
Q Consensus 398 ~VtFtW~g----~AkeV~LAGS---FNNW~~~--IpM~Kqpss~~~a~~gskksGvWsttL~LPPG-~YEYKFIV 462 (488)
.|+|..++ .++.|+|+|+ +.+|+.. ++|.... ...+.|.+.+.||++ .++|||++
T Consensus 2 ~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~----------~~~~~W~~~v~lp~~~~veYkY~~ 66 (120)
T cd05814 2 RVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKED----------DDCNLWKASIELPRGVDFQYRYFV 66 (120)
T ss_pred eEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCC----------CcCCccEEEEEECCCCeEEEEEEE
Confidence 46777755 3899999999 8899844 5786530 145789999999998 89999999
No 19
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=97.02 E-value=0.0064 Score=51.95 Aligned_cols=70 Identities=23% Similarity=0.339 Sum_probs=51.7
Q ss_pred cEEEEEEEec-----CCceEEEEeee---CCCcccc-----ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEE
Q 011344 396 LEVVEIQYSG-----DGEIVEVAGSF---NGWHHRI-----KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFI 461 (488)
Q Consensus 396 Lr~VtFtW~g-----~AkeV~LAGSF---NNW~~~I-----pM~Kqpss~~~a~~gskksGvWsttL~LPPG-~YEYKFI 461 (488)
.++|+|+... .|+.|+|+|+- .+|+... +|.. .....|.+.+.||.| ..+|||+
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~------------~~~~~W~~~~~lp~~~~veyK~v 69 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLC------------PNWPDWFVVASVPAGTYIEFKFL 69 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhcccccccccc------------CCCCCEEEEEEcCCCCcEEEEEE
Confidence 3688999863 38899999987 4898632 4542 245789999999999 8999999
Q ss_pred E---cC--EeeeCCCCCeecc
Q 011344 462 V---DG--QWKVDPQRESVTK 477 (488)
Q Consensus 462 V---DG--eW~~DPdnPtVtD 477 (488)
+ || .|-..++.-...+
T Consensus 70 ~~~~~g~v~WE~g~Nr~~~~p 90 (103)
T cd05820 70 KAPADGTGTWEGGSNHAYTTP 90 (103)
T ss_pred EECCCCCEEEEeCCCEeEECC
Confidence 9 45 3877766554444
No 20
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=96.98 E-value=0.0077 Score=50.85 Aligned_cols=74 Identities=28% Similarity=0.563 Sum_probs=51.0
Q ss_pred cEEEEEEEec---CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---c
Q 011344 396 LEVVEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---D 463 (488)
Q Consensus 396 Lr~VtFtW~g---~AkeV~LAGSF---NNW~~~--IpM~Kqpss~~~a~~gskksGvWsttL~LPPG-~YEYKFIV---D 463 (488)
.+.|+|...+ .|+.|+|+|+- .+|+.. ++|.... .....+.|.+.+.||+| .++|||+| |
T Consensus 6 ~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~--------~t~~~~~W~~~v~lp~~~~veYKy~~~~~~ 77 (106)
T cd05811 6 TVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQ--------YTSSNPLWSVTIPLPAGTSFEYKFIRKESD 77 (106)
T ss_pred EEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCccccccc--------CccCCCcEEEEEEeCCCCcEEEEEEEEcCC
Confidence 4678888765 38999999987 489854 5675320 01235789999999988 69999996 2
Q ss_pred C--EeeeCCCCCeecc
Q 011344 464 G--QWKVDPQRESVTK 477 (488)
Q Consensus 464 G--eW~~DPdnPtVtD 477 (488)
| .|-..++.-...+
T Consensus 78 ~~~~WE~~~nr~~~~~ 93 (106)
T cd05811 78 GSVTWESDPNRSYTVP 93 (106)
T ss_pred CcEEEecCCCeEEECC
Confidence 3 3866664433334
No 21
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=96.97 E-value=0.0015 Score=73.46 Aligned_cols=62 Identities=18% Similarity=0.406 Sum_probs=46.7
Q ss_pred EEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-------eCCeeEEEEEEEc---CE
Q 011344 398 VVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-------LYPGTYEIKFIVD---GQ 465 (488)
Q Consensus 398 ~VtFtW~g~-AkeV~LAGSFNNW~~~-IpM~Kqpss~~~a~~gskksGvWsttL~-------LPPG~YEYKFIVD---Ge 465 (488)
.++|+..++ |+.|+|.|+||+|+.. .+|.+. ..|+|++.+. ++.|. .|||.|. |.
T Consensus 115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~------------~~GvWe~~ip~~~g~~~~~~G~-~Yky~i~~~~g~ 181 (758)
T PLN02447 115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKN------------EFGVWEIFLPDADGSPAIPHGS-RVKIRMETPDGR 181 (758)
T ss_pred CEEEEEECCCCCEEEEEEecCCCCCCccCceeC------------CCCEEEEEECCccccccCCCCC-EEEEEEEeCCCc
Confidence 688998887 9999999999999864 578864 6799999985 34553 6777773 54
Q ss_pred e--eeCCCC
Q 011344 466 W--KVDPQR 472 (488)
Q Consensus 466 W--~~DPdn 472 (488)
| +.||-.
T Consensus 182 ~~~r~dpya 190 (758)
T PLN02447 182 WVDRIPAWI 190 (758)
T ss_pred EEeecCchH
Confidence 3 556643
No 22
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.94 E-value=0.0027 Score=54.59 Aligned_cols=60 Identities=25% Similarity=0.410 Sum_probs=44.7
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc---c--ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCEeee
Q 011344 398 VVEIQYSGD-GEIVEVAGSFNGWH---H--RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQWKV 468 (488)
Q Consensus 398 ~VtFtW~g~-AkeV~LAGSFNNW~---~--~IpM~Kqpss~~~a~~gskksGvWsttL~-LPPG~YEYKFIVDGeW~~ 468 (488)
.+.|+..++ |+.|.|.. |++|. . .++|.++. ....|+|.+.+. +.+|. .|+|.|+|.|..
T Consensus 8 g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~---------~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~p 74 (119)
T cd02852 8 GVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSV---------NRTGDVWHVFVEGLKPGQ-LYGYRVDGPFEP 74 (119)
T ss_pred CEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcc---------cccCCEEEEEECCCCCCC-EEEEEECCCCCC
Confidence 588988887 99999998 88885 2 35676531 124699999985 77886 699999986543
No 23
>PRK14705 glycogen branching enzyme; Provisional
Probab=96.83 E-value=0.0036 Score=73.56 Aligned_cols=66 Identities=33% Similarity=0.602 Sum_probs=50.7
Q ss_pred CcEEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEc---CEe--
Q 011344 395 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD---GQW-- 466 (488)
Q Consensus 395 gLr~VtFtW~g~-AkeV~LAGSFNNW~~~-IpM~Kqpss~~~a~~gskksGvWsttL~-LPPG~YEYKFIVD---GeW-- 466 (488)
+...|.|+..++ |+.|.|.|+||+|... .+|.+. ...|+|++.+. +.+|. .|||.|. |.|
T Consensus 636 ~~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~-----------~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~ 703 (1224)
T PRK14705 636 DVDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSL-----------GSSGVWELFIPGVVAGA-CYKFEILTKAGQWVE 703 (1224)
T ss_pred CCCeEEEEEECCCCCEEEEEEEecCCCCCcccceEC-----------CCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEe
Confidence 455789999887 9999999999999865 568753 35799999985 88885 5888884 555
Q ss_pred eeCCCC
Q 011344 467 KVDPQR 472 (488)
Q Consensus 467 ~~DPdn 472 (488)
+.||-.
T Consensus 704 k~DPyA 709 (1224)
T PRK14705 704 KADPLA 709 (1224)
T ss_pred cCCccc
Confidence 456643
No 24
>PRK14706 glycogen branching enzyme; Provisional
Probab=96.82 E-value=0.0034 Score=69.07 Aligned_cols=67 Identities=31% Similarity=0.461 Sum_probs=50.2
Q ss_pred cEEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcC---Ee--e
Q 011344 396 LEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG---QW--K 467 (488)
Q Consensus 396 Lr~VtFtW~g~-AkeV~LAGSFNNW~~~-IpM~Kqpss~~~a~~gskksGvWsttL~-LPPG~YEYKFIVDG---eW--~ 467 (488)
...|+|+..++ |++|+|.|+||+|... .+|.+. ..|+|.+.+. +.+| ..|||.|+| .+ +
T Consensus 37 ~~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~------------~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~ 103 (639)
T PRK14706 37 VEGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRL------------DFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDK 103 (639)
T ss_pred cccEEEEEECCCCCEEEEEEecCCccccccccccc------------CCCEEEEEECCCCCC-CEEEEEEECCCCCEEec
Confidence 34689998887 9999999999999864 688764 5699999985 4566 468888864 44 5
Q ss_pred eCCCCCee
Q 011344 468 VDPQRESV 475 (488)
Q Consensus 468 ~DPdnPtV 475 (488)
.||-.-.+
T Consensus 104 ~DPYa~~~ 111 (639)
T PRK14706 104 MDPYGSFF 111 (639)
T ss_pred cCcceEEE
Confidence 67754433
No 25
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.73 E-value=0.0054 Score=51.93 Aligned_cols=44 Identities=25% Similarity=0.497 Sum_probs=36.2
Q ss_pred CceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 011344 407 GEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 462 (488)
Q Consensus 407 AkeV~LAGSF---NNW~~~--IpM~Kqpss~~~a~~gskksGvWsttL~LPPG-~YEYKFIV 462 (488)
|+.|+|+|+- .+|+.. ++|.. .....|++.+.||+| .++|||+|
T Consensus 13 Ge~l~v~Gs~~~LG~W~~~~a~~m~~------------~~~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 13 GEAVYISGNCNQLGNWNPSKAKRMQW------------NEGDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred CCEEEEEeCcHHHCCCCccccCcccC------------CCCCCEEEEEEECCCCcEEEEEEE
Confidence 8999999995 689854 56753 245799999999988 79999998
No 26
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.65 E-value=0.0092 Score=48.74 Aligned_cols=73 Identities=14% Similarity=0.043 Sum_probs=50.7
Q ss_pred EEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEc-CEeeeCCCCCe
Q 011344 397 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD-GQWKVDPQRES 474 (488)
Q Consensus 397 r~VtFtW~g~-AkeV~LAGSFNNW~~~IpM~Kqpss~~~a~~gskksGvWsttL~LPPG~YEYKFIVD-GeW~~DPdnPt 474 (488)
..++|+..++ |+.|.|.... |. .++|.++ ..|.|++++..-+|. .|+|.|+ |..+.||-...
T Consensus 8 ~~~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~------------~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~ 71 (85)
T cd02853 8 GGTRFRLWAPDAKRVTLRLDD--GE-EIPMQRD------------GDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRF 71 (85)
T ss_pred CCEEEEEeCCCCCEEEEEecC--CC-cccCccC------------CCcEEEEEeCCCCCC-eEEEEECCCcCCCCCcccc
Confidence 3588998887 9999999643 53 5788764 679999998633775 4777776 56788997776
Q ss_pred eccCCccceEE
Q 011344 475 VTKGGICNNIL 485 (488)
Q Consensus 475 VtDgGnvNNVL 485 (488)
...+.+-+++|
T Consensus 72 ~~~~~~~~s~v 82 (85)
T cd02853 72 QPEGVHGPSQV 82 (85)
T ss_pred CCCCCCCCeEe
Confidence 54333334443
No 27
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.61 E-value=0.0089 Score=49.76 Aligned_cols=53 Identities=28% Similarity=0.487 Sum_probs=41.8
Q ss_pred EEEEEEec----CCceEEEEeee---CCCccccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 011344 398 VVEIQYSG----DGEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 462 (488)
Q Consensus 398 ~VtFtW~g----~AkeV~LAGSF---NNW~~~IpM~Kqpss~~~a~~gskksGvWsttL~LPPG-~YEYKFIV 462 (488)
+|+|+..+ +++.|+|+|+- .+|+...+|.. ...+.|.+.+.||+| .++|||++
T Consensus 2 ~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~------------~~~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 2 NVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQY------------VKDGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred eEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcC------------CCCCCEEEEEEecCCCcEEEEEEE
Confidence 56777755 35778999987 58987778864 245789999999998 69999998
No 28
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.60 E-value=0.0097 Score=48.57 Aligned_cols=53 Identities=26% Similarity=0.491 Sum_probs=40.4
Q ss_pred EEEEEec---CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCC--e-eEEEEEEE
Q 011344 399 VEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP--G-TYEIKFIV 462 (488)
Q Consensus 399 VtFtW~g---~AkeV~LAGSF---NNW~~~--IpM~Kqpss~~~a~~gskksGvWsttL~LPP--G-~YEYKFIV 462 (488)
|+|+..+ .|+.|+|+|+. .+|+.. ++|... ...+.|.+.+.+|+ | .++|||++
T Consensus 2 v~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~-----------~~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 2 VRFQVRCTTQFGQSVYVVGSHPELGNWDPAKALRLNTS-----------NSYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred EEEEEEEECCCCCEEEEEeCcHHhCCcChhcCccccCC-----------CCCCcEEEEEEecCCCCCeEEEEEEE
Confidence 4455543 48999999998 489853 567642 12689999999999 7 79999998
No 29
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.60 E-value=0.0071 Score=67.07 Aligned_cols=64 Identities=30% Similarity=0.505 Sum_probs=48.6
Q ss_pred EEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCe-eEEEEEEEc-CEe--eeC
Q 011344 397 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVD-GQW--KVD 469 (488)
Q Consensus 397 r~VtFtW~g~-AkeV~LAGSFNNW~~~-IpM~Kqpss~~~a~~gskksGvWsttL~-LPPG-~YEYKFIVD-GeW--~~D 469 (488)
..|+|+..++ |++|.|.|+||+|... .+|.+. ...|+|.+.+. +++| .|.|++..+ |.| ..|
T Consensus 131 ~gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~D 199 (726)
T PRK05402 131 SGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLR-----------GESGVWELFIPGLGEGELYKFEILTADGELLLKAD 199 (726)
T ss_pred CcEEEEEECCCCCEEEEEEEcCCCCCccccceEc-----------CCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCC
Confidence 3689999887 9999999999999754 578763 26799999985 6777 777777665 555 445
Q ss_pred CC
Q 011344 470 PQ 471 (488)
Q Consensus 470 Pd 471 (488)
|-
T Consensus 200 PY 201 (726)
T PRK05402 200 PY 201 (726)
T ss_pred Cc
Confidence 53
No 30
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=96.59 E-value=0.02 Score=48.40 Aligned_cols=74 Identities=20% Similarity=0.221 Sum_probs=50.1
Q ss_pred cEEEEEEEe-c---CCceEEEEeee---CCCcccc--ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---
Q 011344 396 LEVVEIQYS-G---DGEIVEVAGSF---NGWHHRI--KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV--- 462 (488)
Q Consensus 396 Lr~VtFtW~-g---~AkeV~LAGSF---NNW~~~I--pM~Kqpss~~~a~~gskksGvWsttL~LPPG-~YEYKFIV--- 462 (488)
.++|+|..+ . .|+.|+|+|+- .+|+... .|... ......+.|.+.+.||.| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~--------~~~~~~~~W~~~~~lp~~~~~eyK~~~~~~ 73 (101)
T cd05807 2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFN--------QVVYQYPNWYYDVSVPAGTTIEFKFIKKNG 73 (101)
T ss_pred cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccc--------cCCCcCCcEEEEEEcCCCCcEEEEEEEECC
Confidence 467888875 3 38999999987 4998542 22100 001245789999999999 89999998
Q ss_pred cCE--eeeCCCCCeecc
Q 011344 463 DGQ--WKVDPQRESVTK 477 (488)
Q Consensus 463 DGe--W~~DPdnPtVtD 477 (488)
||. |-..++.-...+
T Consensus 74 ~~~~~WE~g~nr~~~~p 90 (101)
T cd05807 74 DNTVTWESGSNHTYTAP 90 (101)
T ss_pred CCCEEEEeCCCEEEeCC
Confidence 343 766655444433
No 31
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.50 E-value=0.0059 Score=65.70 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=52.6
Q ss_pred EEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcC-EeeeCCCCCee
Q 011344 399 VEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG-QWKVDPQRESV 475 (488)
Q Consensus 399 VtFtW~g~-AkeV~LAGSFNNW~~~IpM~Kqpss~~~a~~gskksGvWsttL~-LPPG~YEYKFIVDG-eW~~DPdnPtV 475 (488)
|+|+..++ |++|.|.+ ++ ..++|.+. ..|+|++++. +.+| |.|+|.||| .-+.||-....
T Consensus 1 v~FrlwAP~A~~V~L~l---~~-~~~~m~k~------------~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~ 63 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRL---NG-ALHAMQRL------------GDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQ 63 (542)
T ss_pred CEEEEECCCCCEEEEEe---CC-CEEeCeEC------------CCCEEEEEECCCCCC-CEEEEEEeeeEEecCcccccc
Confidence 57888887 99999997 23 35789874 5799999996 7788 789999999 67889987765
Q ss_pred ccCCccceEE
Q 011344 476 TKGGICNNIL 485 (488)
Q Consensus 476 tDgGnvNNVL 485 (488)
..+.+..++|
T Consensus 64 ~~~~~~~S~V 73 (542)
T TIGR02402 64 PDGVHGPSQV 73 (542)
T ss_pred ccCCCCCeEE
Confidence 4332223444
No 32
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=96.45 E-value=0.036 Score=46.83 Aligned_cols=67 Identities=25% Similarity=0.541 Sum_probs=47.3
Q ss_pred EEEEEec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe--eEEEEEEE--c--
Q 011344 399 VEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV--D-- 463 (488)
Q Consensus 399 VtFtW~g----~AkeV~LAGSF---NNW~~~--IpM~Kqpss~~~a~~gskksGvWsttL~LPPG--~YEYKFIV--D-- 463 (488)
|+|+... .++.|+|+|+. .+|+.. ++|.. .....|.+.+.+|++ .++|||++ +
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~------------~~~~~W~~~v~~p~~~~~ieYKyvi~~~~~ 69 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSD------------VGFPIWEADIDISKDSFPFEYKYIIANKDS 69 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCC------------CCCCcEEEEEEeCCCCccEEEEEEEEeCCC
Confidence 5666644 38999999996 589854 56764 256789999999986 59999998 2
Q ss_pred C--EeeeCCCCCeecc
Q 011344 464 G--QWKVDPQRESVTK 477 (488)
Q Consensus 464 G--eW~~DPdnPtVtD 477 (488)
| .|-.-++.-...+
T Consensus 70 ~~~~WE~g~nr~~~~p 85 (99)
T cd05816 70 GVVSWENGPNRELSAP 85 (99)
T ss_pred CcEEEEcCCCeEEECC
Confidence 2 2766555444333
No 33
>PLN02316 synthase/transferase
Probab=96.13 E-value=0.085 Score=61.60 Aligned_cols=64 Identities=13% Similarity=0.338 Sum_probs=46.5
Q ss_pred CCcEEEEEEEec------CCceEEEEeeeCCCccccc--cCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE-cC
Q 011344 394 SGLEVVEIQYSG------DGEIVEVAGSFNGWHHRIK--MDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DG 464 (488)
Q Consensus 394 sgLr~VtFtW~g------~AkeV~LAGSFNNW~~~Ip--M~Kqpss~~~a~~gskksGvWsttL~LPPG~YEYKFIV-DG 464 (488)
..-.+|++.|+. +..+|+|.|.||+|.+... +.. .+...+..+.|.+++.+|+.-|-.-|+. ||
T Consensus 326 ~aG~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~-------~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg 398 (1036)
T PLN02316 326 KAGDTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKL-------VKSEEKDGDWWYAEVVVPERALVLDWVFADG 398 (1036)
T ss_pred CCCCEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCccccee-------ecccCCCCCEEEEEEecCCCceEEEEEEecC
Confidence 334689999973 3789999999999987532 111 1112234569999999999999999997 66
No 34
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=95.92 E-value=0.024 Score=61.91 Aligned_cols=67 Identities=24% Similarity=0.329 Sum_probs=49.6
Q ss_pred EEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEc---CE--eee
Q 011344 397 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD---GQ--WKV 468 (488)
Q Consensus 397 r~VtFtW~g~-AkeV~LAGSFNNW~~~-IpM~Kqpss~~~a~~gskksGvWsttL~-LPPG~YEYKFIVD---Ge--W~~ 468 (488)
..++|+..++ |+.|.|.|+||+|... .+|.+. ...|+|++.+. +.+|. .|+|.|+ |. ++.
T Consensus 28 ~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~ 95 (613)
T TIGR01515 28 SGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRR-----------NDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKA 95 (613)
T ss_pred CcEEEEEECCCCCEEEEEEecCCCCCceecceEe-----------cCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeC
Confidence 4688998887 9999999999999754 467753 24799999885 46675 4888874 55 467
Q ss_pred CCCCCee
Q 011344 469 DPQRESV 475 (488)
Q Consensus 469 DPdnPtV 475 (488)
||-.-..
T Consensus 96 DPYA~~~ 102 (613)
T TIGR01515 96 DPYAFYA 102 (613)
T ss_pred CCCEeee
Confidence 8855433
No 35
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=95.72 E-value=0.061 Score=45.72 Aligned_cols=67 Identities=27% Similarity=0.451 Sum_probs=46.8
Q ss_pred EEEEEEe-c---CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---cC
Q 011344 398 VVEIQYS-G---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG 464 (488)
Q Consensus 398 ~VtFtW~-g---~AkeV~LAGSFN---NW~~~--IpM~Kqpss~~~a~~gskksGvWsttL~LPPG-~YEYKFIV---DG 464 (488)
.|+|... + .++.|+|+|+.. +|+.. ++|.. .....|.+.+.||.| ..+|||++ +|
T Consensus 2 ~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~------------~~~~~W~~~v~lp~~~~veyKyv~~~~~~ 69 (97)
T cd05810 2 SVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDP------------TAYPTWSGSISLPASTNVEWKCLKRNETN 69 (97)
T ss_pred eEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccC------------CCCCeEEEEEEcCCCCeEEEEEEEEcCCC
Confidence 4666632 2 389999999884 99854 45643 245789999999998 89999998 22
Q ss_pred -----EeeeCCCCCeec
Q 011344 465 -----QWKVDPQRESVT 476 (488)
Q Consensus 465 -----eW~~DPdnPtVt 476 (488)
.|...++.-...
T Consensus 70 ~~~~v~WE~g~Nr~~~~ 86 (97)
T cd05810 70 PTAGVQWQGGGNNQLTT 86 (97)
T ss_pred CcceEEEeeCCCEEEeC
Confidence 476655544333
No 36
>PRK05402 glycogen branching enzyme; Provisional
Probab=95.62 E-value=0.024 Score=62.98 Aligned_cols=62 Identities=21% Similarity=0.076 Sum_probs=46.3
Q ss_pred EEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE--cCEe--eeCCCC
Q 011344 398 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV--DGQW--KVDPQR 472 (488)
Q Consensus 398 ~VtFtW~g~-AkeV~LAGSFNNW~~~IpM~Kqpss~~~a~~gskksGvWsttL~LPPG~YEYKFIV--DGeW--~~DPdn 472 (488)
-++|+..++ |+.|.|.|+||+ ....+|.+. ...|+|++.+.+..|.. |||.| ||+| +.||-.
T Consensus 29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~-----------~~~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DPya 95 (726)
T PRK05402 29 GLVVRALLPGAEEVWVILPGGG-RKLAELERL-----------HPRGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDPYR 95 (726)
T ss_pred cEEEEEECCCCeEEEEEeecCC-CccccceEc-----------CCCceEEEEecCCCCCC-eEEEEEeCCceeEeccccc
Confidence 578888776 999999999996 344688863 36799999999778833 55555 8864 567754
No 37
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=94.83 E-value=0.084 Score=44.45 Aligned_cols=55 Identities=20% Similarity=0.439 Sum_probs=39.8
Q ss_pred EEEEEec---CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 011344 399 VEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 462 (488)
Q Consensus 399 VtFtW~g---~AkeV~LAGSF---NNW~~~--IpM~Kqpss~~~a~~gskksGvWsttL~LPPG-~YEYKFIV 462 (488)
|+|...+ .|+.|+|+|+- .+|+.. ++|... .......|.+.+.+|++ .++|||+|
T Consensus 2 l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~---------~~~~~~~W~~~v~~~~~~~veYky~v 65 (101)
T cd05815 2 LSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPS---------HQGDVLVWSGSISVPPGFSSEYNYYV 65 (101)
T ss_pred EEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeec---------CCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence 5566554 38999999987 589654 567531 01234589999999987 69999999
No 38
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=94.49 E-value=0.092 Score=44.17 Aligned_cols=59 Identities=24% Similarity=0.542 Sum_probs=37.3
Q ss_pred EEEEEEec------CCceEEEEeeeCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE-cC
Q 011344 398 VVEIQYSG------DGEIVEVAGSFNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DG 464 (488)
Q Consensus 398 ~VtFtW~g------~AkeV~LAGSFNNW~~~--IpM~Kqpss~~~a~~gskksGvWsttL~LPPG~YEYKFIV-DG 464 (488)
+|+|.|.. ++..|.+.+.|++|... +.|.+.. . ....+.|++++.+|...|+..|.. ||
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~-------~-~~~~~~~~~tv~vP~~a~~~dfvF~dg 70 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMC-------V-PDEGGWWKATVDVPEDAYVMDFVFNDG 70 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEES-------S----TTEEEEEEE--TTTSEEEEEEE-S
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceee-------e-eecCCEEEEEEEEcCCceEEEEEEcCC
Confidence 67888843 37889999999999866 4565431 0 013799999999999999999988 65
No 39
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=94.16 E-value=0.14 Score=55.90 Aligned_cols=66 Identities=24% Similarity=0.318 Sum_probs=47.1
Q ss_pred EEEEEEecC-CceEEEEeeeCCCcc-----ccccCCCCCCCccccccccCCCcEEEEEE-eCCe-eEEEEEEEcCE--ee
Q 011344 398 VVEIQYSGD-GEIVEVAGSFNGWHH-----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVDGQ--WK 467 (488)
Q Consensus 398 ~VtFtW~g~-AkeV~LAGSFNNW~~-----~IpM~Kqpss~~~a~~gskksGvWsttL~-LPPG-~YEYKFIVDGe--W~ 467 (488)
.|.|+..++ |++|.|.+ |++|.. .++|.+. ..|+|++.+. +.+| .|.|++..+|. +.
T Consensus 20 ~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~------------~~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~ 86 (605)
T TIGR02104 20 KTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRG------------ENGVWSAVLEGDLHGYFYTYQVCINGKWRET 86 (605)
T ss_pred eeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccC------------CCCEEEEEECCCCCCCEEEEEEEcCCCeEEE
Confidence 489999887 99999997 888853 4578763 5799999996 5666 44444444565 47
Q ss_pred eCCCCCeec
Q 011344 468 VDPQRESVT 476 (488)
Q Consensus 468 ~DPdnPtVt 476 (488)
.||-.-...
T Consensus 87 ~DPya~~~~ 95 (605)
T TIGR02104 87 VDPYAKAVT 95 (605)
T ss_pred cCCCcceec
Confidence 888655443
No 40
>PLN02316 synthase/transferase
Probab=94.02 E-value=0.38 Score=56.42 Aligned_cols=58 Identities=26% Similarity=0.417 Sum_probs=44.2
Q ss_pred CCcEEEEEEEecC------CceEEEEeeeCCCcccc------ccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEE
Q 011344 394 SGLEVVEIQYSGD------GEIVEVAGSFNGWHHRI------KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFI 461 (488)
Q Consensus 394 sgLr~VtFtW~g~------AkeV~LAGSFNNW~~~I------pM~Kqpss~~~a~~gskksGvWsttL~LPPG~YEYKFI 461 (488)
..-.+|++.|+.. ..+|++.|+||.|.+.. .|.+. ...+.|.+++.+|.+.|-.-|+
T Consensus 488 ~aG~~v~v~Yn~~~t~l~~~~ev~~~g~~NrWth~~~~~~~~~m~~~-----------~~g~~~~a~v~vP~da~~mdfv 556 (1036)
T PLN02316 488 QAGTTVTVLYNPANTVLNGKPEVWFRGSFNRWTHRLGPLPPQKMVPA-----------DNGSHLKATVKVPLDAYMMDFV 556 (1036)
T ss_pred CCCCEEEEEECCCCCcCCCCceEEEEccccCcCCCCCCCCceeeeec-----------CCCceEEEEEEccccceEEEEE
Confidence 3346899999652 68899999999998763 24432 2345669999999999999988
Q ss_pred E
Q 011344 462 V 462 (488)
Q Consensus 462 V 462 (488)
-
T Consensus 557 F 557 (1036)
T PLN02316 557 F 557 (1036)
T ss_pred E
Confidence 7
No 41
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=92.86 E-value=0.48 Score=49.75 Aligned_cols=81 Identities=20% Similarity=0.231 Sum_probs=56.5
Q ss_pred CCcEEEEEEEecC-Cc-------eEEEEeeeCCCcc------ccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEE
Q 011344 394 SGLEVVEIQYSGD-GE-------IVEVAGSFNGWHH------RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEI 458 (488)
Q Consensus 394 sgLr~VtFtW~g~-Ak-------eV~LAGSFNNW~~------~IpM~Kqpss~~~a~~gskksGvWsttL~LPPG-~YEY 458 (488)
.+.+.|||-|+++ ++ .|+|.+ |+... +..|.+- ....+|..++.||.. +-.|
T Consensus 36 ~~~~~vTFlwr~~~~~~~~~~~~~v~~~~--n~~tdh~~~~~~~~l~rl-----------~~tDvW~~~~~~p~~~r~sY 102 (411)
T PRK10439 36 DGMVRVTFWWRDPQGDEEHSTIRRVWIYI--NGVTDHHQNSQPQSLQRI-----------AGTDVWQWSTELSANWRGSY 102 (411)
T ss_pred CCcEEEEEEeeCCCCCcccccceeEEEeC--CCCCCcCccCCcchhhcc-----------CCCceEEEEEEECcccEEEE
Confidence 5668999999985 32 588743 34432 2367775 367899999999999 8999
Q ss_pred EEEEc---C-------------------------EeeeCCCCCeeccC--CccceEEEe
Q 011344 459 KFIVD---G-------------------------QWKVDPQRESVTKG--GICNNILRV 487 (488)
Q Consensus 459 KFIVD---G-------------------------eW~~DPdnPtVtDg--GnvNNVLeV 487 (488)
+|+++ . .-..||.||....+ |...++|++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~l 161 (411)
T PRK10439 103 CFIPTERDDIFSAFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEM 161 (411)
T ss_pred EEEeccccccccccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccC
Confidence 99993 1 11479999887642 444577654
No 42
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=92.65 E-value=0.69 Score=41.32 Aligned_cols=79 Identities=22% Similarity=0.276 Sum_probs=53.2
Q ss_pred EEEEEEEe----cCCceEEEEeeeCCCccc-----cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEEcCE-
Q 011344 397 EVVEIQYS----GDGEIVEVAGSFNGWHHR-----IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVDGQ- 465 (488)
Q Consensus 397 r~VtFtW~----g~AkeV~LAGSFNNW~~~-----IpM~Kqpss~~~a~~gskksGvWsttL~LPPG-~YEYKFIVDGe- 465 (488)
..|||-|. +....|.|-|..|++..+ -.|.+. ..+.+|..++.||.+ +=.|.|+.+-.
T Consensus 2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl-----------~gTDVW~~t~~lp~d~rgSY~~~p~~~~ 70 (122)
T PF11806_consen 2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRL-----------PGTDVWYWTYRLPADWRGSYSFIPDVPD 70 (122)
T ss_dssp -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE------------TTSSEEEEEEEEETT-EEEEEEEEES-T
T ss_pred cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeC-----------CCCceEEEEEEECcccEEEEEEEecCcc
Confidence 47999999 446789999999999654 346654 357899999999998 88999997532
Q ss_pred ---------------eeeCCCCCeecc-----CCccceEEE
Q 011344 466 ---------------WKVDPQRESVTK-----GGICNNILR 486 (488)
Q Consensus 466 ---------------W~~DPdnPtVtD-----gGnvNNVLe 486 (488)
-..||-||.... .|..-++++
T Consensus 71 ~~~~~r~~~r~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~ 111 (122)
T PF11806_consen 71 ARGAQREWWRAILAQAQADPLNPRPWPNGAQDRGNAASVLE 111 (122)
T ss_dssp -HHHHHHHHHHHGGG-B--TTSSSEEE-TT---SSEEEEEE
T ss_pred cchhHHHHHHHHHhccCCCCCCCCCCCCCccccccccCcee
Confidence 356899988652 256667665
No 43
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=92.55 E-value=0.97 Score=40.34 Aligned_cols=56 Identities=21% Similarity=0.415 Sum_probs=38.0
Q ss_pred EEecCCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe----eEEEEEEE
Q 011344 402 QYSGDGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG----TYEIKFIV 462 (488)
Q Consensus 402 tW~g~AkeV~LAGSF---NNW~~~--IpM~Kqpss~~~a~~gskksGvWsttL~LPPG----~YEYKFIV 462 (488)
++-.++++|+|+|+- .+|+.. ++|.....+ ........|.+.+.|++| ..+|||+.
T Consensus 10 ~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt-----~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 10 TFADRDTELLVLGSRPELGSWDPQRAVPMRPARKA-----LSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred eecCCCCEEEEEECchhcCCCCccccccccccccc-----ccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 344468999999986 589854 456532000 000234579999999986 79999998
No 44
>PLN02950 4-alpha-glucanotransferase
Probab=91.57 E-value=1.2 Score=51.59 Aligned_cols=70 Identities=20% Similarity=0.386 Sum_probs=52.1
Q ss_pred cEEEEEEEec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe--eEEEEEEE--
Q 011344 396 LEVVEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV-- 462 (488)
Q Consensus 396 Lr~VtFtW~g----~AkeV~LAGSF---NNW~~~--IpM~Kqpss~~~a~~gskksGvWsttL~LPPG--~YEYKFIV-- 462 (488)
.+.|+|.... .|..|+|+|+- .+|+.. ++|.. .....|.+.+.+|++ ..+|||++
T Consensus 152 ~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~------------~~~p~W~~~v~lp~~~~~~EYKyv~~~ 219 (909)
T PLN02950 152 EIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNY------------TGDSIWEADCLVPKSDFPIKYKYALQT 219 (909)
T ss_pred ceeEEEEEecCccCCCCeEEEEechhhcCCCCccccccccc------------CCCCcEEEEEEecCCCceEEEEEEEEc
Confidence 4788888755 38999999987 599854 44543 256889999999988 59999998
Q ss_pred -cC--EeeeCCCCCeecc
Q 011344 463 -DG--QWKVDPQRESVTK 477 (488)
Q Consensus 463 -DG--eW~~DPdnPtVtD 477 (488)
+| .|-..++.-...+
T Consensus 220 ~~g~v~WE~g~NR~~~~p 237 (909)
T PLN02950 220 AEGLVSLELGVNRELSLD 237 (909)
T ss_pred CCCceEEeeCCCceeecC
Confidence 44 3877766655544
No 45
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=90.20 E-value=0.68 Score=51.89 Aligned_cols=55 Identities=24% Similarity=0.413 Sum_probs=42.2
Q ss_pred EEEEEEecC-CceEEEEeeeCCCcc----ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCEe
Q 011344 398 VVEIQYSGD-GEIVEVAGSFNGWHH----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 466 (488)
Q Consensus 398 ~VtFtW~g~-AkeV~LAGSFNNW~~----~IpM~Kqpss~~~a~~gskksGvWsttL~-LPPG~YEYKFIVDGeW 466 (488)
.|.|+..++ |+.|.|. -|++|.. .++|.+ ...|+|.+.+. +.+|.| |+|.|+|.|
T Consensus 15 g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~------------~~~gvW~~~v~~~~~g~~-Y~yrv~g~~ 75 (688)
T TIGR02100 15 GVNFALFSANAEKVELC-LFDAQGEKEEARLPLPE------------RTDDIWHGYLPGAQPGQL-YGYRVHGPY 75 (688)
T ss_pred cEEEEEECCCCCEEEEE-EEcCCCCceeeEEeccc------------CCCCEEEEEECCCCCCCE-EEEEEeeee
Confidence 588999887 9999985 6666542 356765 35799999995 778875 999999854
No 46
>PLN02950 4-alpha-glucanotransferase
Probab=88.44 E-value=2.5 Score=49.19 Aligned_cols=67 Identities=18% Similarity=0.440 Sum_probs=47.2
Q ss_pred EEEEEEEec---CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---cC
Q 011344 397 EVVEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG 464 (488)
Q Consensus 397 r~VtFtW~g---~AkeV~LAGSF---NNW~~~--IpM~Kqpss~~~a~~gskksGvWsttL~LPPG-~YEYKFIV---DG 464 (488)
+.|+|..++ -|+.|+|+|+- .+|+.. ++|... .......|++++.||.| ..+|||++ ||
T Consensus 9 V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~---------~~~d~~~W~~~v~lp~~~~ieYKYv~v~~~g 79 (909)
T PLN02950 9 VTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPV---------HQGDELVWEGSVSVPEGFSCEYSYYVVDDNK 79 (909)
T ss_pred EEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccc---------cCCCCCeEEEEEEecCCCeEEEEEEEEeCCC
Confidence 567777765 38999999998 479754 567532 11234589999999988 79999995 34
Q ss_pred E---eeeCCCC
Q 011344 465 Q---WKVDPQR 472 (488)
Q Consensus 465 e---W~~DPdn 472 (488)
. |-..++.
T Consensus 80 ~vi~WE~g~NR 90 (909)
T PLN02950 80 NVLRWEAGKKR 90 (909)
T ss_pred ceeeeecCCCe
Confidence 3 7666543
No 47
>PLN02960 alpha-amylase
Probab=88.22 E-value=1.2 Score=51.62 Aligned_cols=59 Identities=19% Similarity=0.321 Sum_probs=43.2
Q ss_pred EEEEEEec-CCceEEEEeeeCCCcccc-ccCCCCCCCccccccccCCCcEEEEEE--eCCee-------EEEEEEEc
Q 011344 398 VVEIQYSG-DGEIVEVAGSFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVLW--LYPGT-------YEIKFIVD 463 (488)
Q Consensus 398 ~VtFtW~g-~AkeV~LAGSFNNW~~~I-pM~Kqpss~~~a~~gskksGvWsttL~--LPPG~-------YEYKFIVD 463 (488)
.|.|.-.+ +|..+.|.|+||||.+.. .|.+ +..|+.+-|+|.+++. |..|. -||.|..|
T Consensus 129 ~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 129 RVDFMEWAPGARYCSLVGDFNNWSPTENRARE-------GYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred CeEEEEEcCCceeEEEeecccCCCcccchhhc-------ccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 56666555 499999999999999874 3442 2245668899999995 88773 36777775
No 48
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=87.72 E-value=1.3 Score=52.40 Aligned_cols=64 Identities=16% Similarity=0.228 Sum_probs=46.8
Q ss_pred EEEEEecC-CceEEEEee-eCCCcc---ccccCCCCCCCccccccccCCCcEEEEEE-eCCe-----eEEEEEEEcC---
Q 011344 399 VEIQYSGD-GEIVEVAGS-FNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-----TYEIKFIVDG--- 464 (488)
Q Consensus 399 VtFtW~g~-AkeV~LAGS-FNNW~~---~IpM~Kqpss~~~a~~gskksGvWsttL~-LPPG-----~YEYKFIVDG--- 464 (488)
++|+..++ |..|.|.+- +++|.. .++|.+. ..|+|++.+. +.+| -|.|+|.|+|
T Consensus 329 v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~------------~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~ 396 (1111)
T TIGR02102 329 VTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKG------------DRGVWEVQLTKENTGIDSLTGYYYHYEITRGGD 396 (1111)
T ss_pred EEEEEECCCCCEEEEEEEeCCCCCCceeeEecccC------------CCCEEEEEECCcccCcccCCCceEEEEEECCCc
Confidence 78998887 999999984 456653 4678763 6899999986 5543 3688888876
Q ss_pred -EeeeCCCCCe
Q 011344 465 -QWKVDPQRES 474 (488)
Q Consensus 465 -eW~~DPdnPt 474 (488)
....||-...
T Consensus 397 ~~~~~DPYA~a 407 (1111)
T TIGR02102 397 KVLALDPYAKS 407 (1111)
T ss_pred eEEEeChhheE
Confidence 3567875443
No 49
>PRK03705 glycogen debranching enzyme; Provisional
Probab=85.29 E-value=1.6 Score=48.80 Aligned_cols=55 Identities=25% Similarity=0.441 Sum_probs=41.8
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCEe
Q 011344 398 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 466 (488)
Q Consensus 398 ~VtFtW~g~-AkeV~LAGSFNNW~--~~IpM~Kqpss~~~a~~gskksGvWsttL~-LPPG~YEYKFIVDGeW 466 (488)
.|.|+..++ |+.|.|.. |+++. ..++|.+ ...|+|.+.+. +.+|. .|+|.|+|.|
T Consensus 20 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~------------~~~gvW~~~v~~~~~G~-~Y~yrv~g~~ 78 (658)
T PRK03705 20 GVNFTLFSAHAERVELCV-FDENGQEQRYDLPA------------RSGDIWHGYLPGARPGL-RYGYRVHGPW 78 (658)
T ss_pred CEEEEEECCCCCEEEEEE-EcCCCCeeeEeeee------------ccCCEEEEEECCCCCCC-EEEEEEcccc
Confidence 589998887 99999987 76553 2467764 35799999985 67775 4999999854
No 50
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=85.20 E-value=2.2 Score=49.58 Aligned_cols=68 Identities=19% Similarity=0.236 Sum_probs=47.4
Q ss_pred EEEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEc------CE-
Q 011344 397 EVVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD------GQ- 465 (488)
Q Consensus 397 r~VtFtW~g~-AkeV~LAGSFNNW~--~~IpM~Kqpss~~~a~~gskksGvWsttL~-LPPG~YEYKFIVD------Ge- 465 (488)
..|+|+..++ |+.|.|.+.+++|. ..++|.++ ...|+|++.+. ...|.| |+|.|+ |+
T Consensus 135 ~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~-----------~~~GVWsv~v~g~~~G~~-Y~Y~V~v~~p~~G~v 202 (898)
T TIGR02103 135 SGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRD-----------STSGVWSAEGGSSWKGAY-YRYEVTVYHPSTGKV 202 (898)
T ss_pred CcEEEEEECCCCCEEEEEEEcCCCCccceEeCccC-----------CCCCEEEEEECcCCCCCE-eEEEEEEecCCCCeE
Confidence 4789999887 99999997776664 23678763 25799999985 556653 666665 54
Q ss_pred ---eeeCCCCCeec
Q 011344 466 ---WKVDPQRESVT 476 (488)
Q Consensus 466 ---W~~DPdnPtVt 476 (488)
...||-.-...
T Consensus 203 ~~~~v~DPYA~als 216 (898)
T TIGR02103 203 ETYLVTDPYSVSLS 216 (898)
T ss_pred CCeEEeCcCcceEc
Confidence 36787554443
No 51
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=83.00 E-value=6.3 Score=32.82 Aligned_cols=58 Identities=16% Similarity=0.068 Sum_probs=37.6
Q ss_pred EEEEEEEec---CCceEEEEeeeCC--Cc-cccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE
Q 011344 397 EVVEIQYSG---DGEIVEVAGSFNG--WH-HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV 462 (488)
Q Consensus 397 r~VtFtW~g---~AkeV~LAGSFNN--W~-~~IpM~Kqpss~~~a~~gskksGvWsttL~LPPG~YEYKFIV 462 (488)
.+|+|+.+- +...|.|.-.-+. |. ..++|.+... +.....|++++.++.|.+.|.|+|
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~--------~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGS--------DELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeee--------CCceeEEEEEEecCCcEEEEEEEE
Confidence 455555543 3678888655443 22 2478876521 112246999999888999999999
No 52
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=72.64 E-value=11 Score=45.46 Aligned_cols=56 Identities=25% Similarity=0.388 Sum_probs=43.3
Q ss_pred EEEEEEEecC-CceEEEEeeeCCCccc----cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCEe
Q 011344 397 EVVEIQYSGD-GEIVEVAGSFNGWHHR----IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 466 (488)
Q Consensus 397 r~VtFtW~g~-AkeV~LAGSFNNW~~~----IpM~Kqpss~~~a~~gskksGvWsttL~-LPPG~YEYKFIVDGeW 466 (488)
..|.|+...+ |+.|.|. -|+.|... ++|.. +..++|.+.+. +.+|. .|+|.|+|.|
T Consensus 23 ~gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~------------~~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 23 GGVNLALFSGAAERVEFC-LFDLWGVREEARIKLPG------------RTGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred CeEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCC------------CcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 3689988876 9999997 89888643 45542 35789999885 88897 5999999855
No 53
>PLN03244 alpha-amylase; Provisional
Probab=67.48 E-value=4.4 Score=47.15 Aligned_cols=58 Identities=17% Similarity=0.366 Sum_probs=40.8
Q ss_pred EEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE--eCCee-------EEEEEEEc
Q 011344 400 EIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW--LYPGT-------YEIKFIVD 463 (488)
Q Consensus 400 tFtW~g~AkeV~LAGSFNNW~~~IpM~Kqpss~~~a~~gskksGvWsttL~--LPPG~-------YEYKFIVD 463 (488)
-..|.-+|.--.|.|+||||.+.....+. +..|+.+-|.|.+++. |..|. -||.|.-|
T Consensus 135 ~~ewapga~~~~~~gdfn~w~~~~~~~r~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (872)
T PLN03244 135 FMDWAPGARYCAIIGDFNGWSPTENAARE------GHFGHDDYGYWFIILEDKLREGEEPDELYFQQYNYVDD 201 (872)
T ss_pred eEeecCCcceeeeeccccCCCcccccccc------ccccccccceEEEEechhhhcCCCchhhhHhhhccccc
Confidence 34566668999999999999977544442 1245567899999985 77773 35666544
No 54
>PLN02877 alpha-amylase/limit dextrinase
Probab=55.43 E-value=27 Score=41.46 Aligned_cols=51 Identities=12% Similarity=0.214 Sum_probs=35.9
Q ss_pred EEEEEEecC-CceEEEEeeeCCCccc-----cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEc
Q 011344 398 VVEIQYSGD-GEIVEVAGSFNGWHHR-----IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD 463 (488)
Q Consensus 398 ~VtFtW~g~-AkeV~LAGSFNNW~~~-----IpM~Kqpss~~~a~~gskksGvWsttL~-LPPG~YEYKFIVD 463 (488)
.++|+..++ |+.|.|.- |++|... ++|. ...|+|++.+. ...|. .|+|.|+
T Consensus 223 g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~-------------~~~GVWsv~v~~~~~G~-~Y~Y~V~ 280 (970)
T PLN02877 223 AVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK-------------ESNGVWSVEGPKSWEGC-YYVYEVS 280 (970)
T ss_pred CEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc-------------CCCCEEEEEeccCCCCC-eeEEEEe
Confidence 689998887 99999984 6655321 3454 25899999986 45663 4777775
No 55
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=52.72 E-value=29 Score=30.10 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=41.2
Q ss_pred EEEEEEe---cCCceEEEE-eeeCCC----c-cccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE--cCE-
Q 011344 398 VVEIQYS---GDGEIVEVA-GSFNGW----H-HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV--DGQ- 465 (488)
Q Consensus 398 ~VtFtW~---g~AkeV~LA-GSFNNW----~-~~IpM~Kqpss~~~a~~gskksGvWsttL~LPPG~YEYKFIV--DGe- 465 (488)
.|+|+.+ ++.++|.|. |+-..| . ..++|.+.. .+..-..|++++.++..+..|.|.| +|+
T Consensus 22 ~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~--------~~~~fDyye~~l~~~~~r~~Y~F~l~~~~~~ 93 (120)
T PF02903_consen 22 TLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIA--------SDELFDYYEATLKLPEKRLRYYFELEDGGET 93 (120)
T ss_dssp EEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEE--------EESSEEEEEEEEE-TTSEEEEEEEEEETTEE
T ss_pred EEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEE--------eCCCeEEEEEEEECCCCeEEEEEEEEeCCEE
Confidence 4455543 347788885 666666 1 235787642 1233458999999999989999988 343
Q ss_pred eeeCCCC
Q 011344 466 WKVDPQR 472 (488)
Q Consensus 466 W~~DPdn 472 (488)
|.++...
T Consensus 94 ~~y~~~G 100 (120)
T PF02903_consen 94 YYYGERG 100 (120)
T ss_dssp EEEETTE
T ss_pred EEEeCCc
Confidence 5555544
No 56
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=51.12 E-value=18 Score=41.85 Aligned_cols=42 Identities=24% Similarity=0.429 Sum_probs=30.8
Q ss_pred EEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE
Q 011344 399 VEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW 450 (488)
Q Consensus 399 VtFtW~g~-AkeV~LAGSFNNW~~~IpM~Kqpss~~~a~~gskksGvWsttL~ 450 (488)
|.|+-.++ ++.|.++|+||+|+.. .+...+ ....|.|++.+.
T Consensus 115 v~~~ewaP~a~~~s~~gd~n~W~~~-~~~~~~---------k~~~g~w~i~l~ 157 (757)
T KOG0470|consen 115 VDFTEWAPLAEAVSLIGDFNNWNPS-SNELKP---------KDDLGVWEIDLP 157 (757)
T ss_pred eeeeeecccccccccccccCCCCCc-ccccCc---------ccccceeEEecC
Confidence 77777776 8999999999999865 332110 136789998876
No 57
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=46.49 E-value=23 Score=40.37 Aligned_cols=62 Identities=31% Similarity=0.358 Sum_probs=46.9
Q ss_pred hhhhhccchhh-------hHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhcccch
Q 011344 322 SEARRRENQLE-------IDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKD 383 (488)
Q Consensus 322 ~~~~~~~~~~e-------i~~l~~mlhQkelE~~~lk~q~e~tK~aLa~l~~k~~~ei~~AqkLlseK~ 383 (488)
+|+.|.+=+.| |++||..+-||++||++||-.||.+.-++.-+....-.++.-...|+-.+.
T Consensus 98 le~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~LP~sllP~~~ 166 (907)
T KOG2264|consen 98 LEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKLFLPFSLLPLQI 166 (907)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeccccCcccC
Confidence 45555555544 467899999999999999999999999888777767677766666665443
No 58
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.31 E-value=19 Score=37.28 Aligned_cols=30 Identities=37% Similarity=0.398 Sum_probs=23.3
Q ss_pred hhhhHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 011344 330 QLEIDHLKFMLHQKEMELSRLKEQIEKEKL 359 (488)
Q Consensus 330 ~~ei~~l~~mlhQkelE~~~lk~q~e~tK~ 359 (488)
+.||++|+-|||||..++..--.||-.-|+
T Consensus 231 keeia~Lkk~L~qkdq~ileKdkqisnLKa 260 (305)
T KOG3990|consen 231 KEEIARLKKLLHQKDQLILEKDKQISNLKA 260 (305)
T ss_pred HHHHHHHHHHHhhhHHHHHhhhhhhhccCc
Confidence 469999999999999888766666554444
No 59
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=45.87 E-value=35 Score=24.75 Aligned_cols=30 Identities=23% Similarity=0.572 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCCCCCCCCChHHHHHhchhhHHHHHHH
Q 011344 66 NDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRR 102 (488)
Q Consensus 66 ~d~~ef~s~~~lp~~hvps~kel~~hgr~dlan~vrr 102 (488)
+||++||...|+|..+-. .-|++|-+.||.
T Consensus 7 ~~L~~wL~~~gi~~~~~~-------~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 7 SDLKSWLKSHGIPVPKSA-------KTRDELLKLAKK 36 (38)
T ss_pred HHHHHHHHHcCCCCCCCC-------CCHHHHHHHHHH
Confidence 689999999999876654 456777777764
No 60
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=43.29 E-value=1e+02 Score=27.05 Aligned_cols=68 Identities=21% Similarity=0.177 Sum_probs=38.5
Q ss_pred EEEEEEecC--CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCe--------eEEEEEEEcCE
Q 011344 398 VVEIQYSGD--GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--------TYEIKFIVDGQ 465 (488)
Q Consensus 398 ~VtFtW~g~--AkeV~LAGSFNNW~~~IpM~Kqpss~~~a~~gskksGvWsttL~LPPG--------~YEYKFIVDGe 465 (488)
..++....- .+.|.|.=+|++|.....+.-.................|...+.|++. .+-.+|.|+|.
T Consensus 22 ~G~V~V~NlayeK~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~g~ 99 (113)
T PF03370_consen 22 SGTVRVRNLAYEKEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVNGQ 99 (113)
T ss_dssp EEEEEEE-SSSSEEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEETTE
T ss_pred EEEEEEEcCCCCeEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeCCC
Confidence 344444443 688999999999986644321100000000111234588888888754 57788999985
No 61
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=42.60 E-value=43 Score=28.02 Aligned_cols=58 Identities=26% Similarity=0.294 Sum_probs=38.9
Q ss_pred EEEEEEEecCC---ceEEEEeee-CCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE-c-CEeeeC
Q 011344 397 EVVEIQYSGDG---EIVEVAGSF-NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-D-GQWKVD 469 (488)
Q Consensus 397 r~VtFtW~g~A---keV~LAGSF-NNW~~~IpM~Kqpss~~~a~~gskksGvWsttL~LPPG~YEYKFIV-D-GeW~~D 469 (488)
-.|.+.+.+++ ..|+|.+.- ..| ++|.+. -...|.+.-.++.|.+.+|+-. | |+|...
T Consensus 14 l~v~v~n~gG~gdi~~Vevk~~~s~~W---~~m~r~------------wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~ 77 (82)
T PF01357_consen 14 LAVLVKNVGGDGDIKAVEVKQSGSGNW---IPMKRS------------WGAVWQIDSNPPGGPLSFRVTSGDSGQTVVA 77 (82)
T ss_dssp EEEEEEECCTTS-EEEEEEEETTSSS----EE-EEE------------CTTEEEEE-SS--SSEEEEEEETTTSEEEEE
T ss_pred EEEEEEEcCCCccEEEEEEEeCCCCCc---eEeecC------------cCceEEECCCCcCCCEEEEEEEcCCCeEEEE
Confidence 45777777652 579999554 458 588863 4569999887788899999988 7 888654
No 62
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=41.30 E-value=29 Score=26.94 Aligned_cols=30 Identities=30% Similarity=0.573 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHhcCCCCC-CCCChHHHHHh
Q 011344 62 EELYNDLREFLSTVGLSES-HVPSMKELSAH 91 (488)
Q Consensus 62 ~el~~d~~ef~s~~~lp~~-hvps~kel~~h 91 (488)
+.++..|++.+.+-.+|+| .+||..+|.++
T Consensus 3 ~~i~~~l~~~I~~g~~~~g~~lps~~~la~~ 33 (64)
T PF00392_consen 3 EQIYDQLRQAILSGRLPPGDRLPSERELAER 33 (64)
T ss_dssp HHHHHHHHHHHHTTSS-TTSBE--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCEeCCHHHHHHH
Confidence 4678899999999999998 68999999875
No 63
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=36.92 E-value=97 Score=28.69 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=34.6
Q ss_pred CcEEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEE
Q 011344 395 GLEVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIK 459 (488)
Q Consensus 395 gLr~VtFtW~g~-AkeV~LAGSFNNW~~~IpM~Kqpss~~~a~~gskksGvWsttL~LPPG~YEYK 459 (488)
.--+|+|.|... +..|...+...-|... .+.- +.+..|+.++.- ||.|.|+
T Consensus 60 pGDTVtw~~~d~~~Hnv~~~~~~~~~g~~-~~~~------------~~~~s~~~Tfe~-~G~Y~Y~ 111 (128)
T COG3794 60 PGDTVTWVNTDSVGHNVTAVGGMDPEGSG-TLKA------------GINESFTHTFET-PGEYTYY 111 (128)
T ss_pred CCCEEEEEECCCCCceEEEeCCCCccccc-cccc------------CCCcceEEEecc-cceEEEE
Confidence 335899999988 9999999888545432 2221 234566666655 9999886
No 64
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=36.24 E-value=35 Score=28.40 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=29.2
Q ss_pred CCCCCCCChHHHHHhchhhHHHHHHHhhHHHHHHH
Q 011344 77 LSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQL 111 (488)
Q Consensus 77 lp~~hvps~kel~~hgr~dlan~vrrrgyk~i~~l 111 (488)
+|-.|+++..||.+..+.+|+.+++ ++.+.+++.
T Consensus 42 iPk~h~~~~~~l~~~~~~~l~~~~~-~~~~~l~~~ 75 (104)
T cd01278 42 IPKEHIASLKALTKEDVPLLEHMET-VGREKLLRS 75 (104)
T ss_pred EecCCCCChHHCCHhHHHHHHHHHH-HHHHHHHHH
Confidence 5788999999999999999999988 777766654
No 65
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=34.32 E-value=52 Score=23.83 Aligned_cols=30 Identities=30% Similarity=0.343 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCCCCC-CCCChHHHHHhch
Q 011344 64 LYNDLREFLSTVGLSES-HVPSMKELSAHGR 93 (488)
Q Consensus 64 l~~d~~ef~s~~~lp~~-hvps~kel~~hgr 93 (488)
++..|+..+....++++ ++||.+||+++=-
T Consensus 1 i~~~l~~~i~~~~~~~~~~l~s~~~la~~~~ 31 (60)
T smart00345 1 VAERLREDIVSGELRPGDKLPSERELAAQLG 31 (60)
T ss_pred CHHHHHHHHHcCCCCCCCcCcCHHHHHHHHC
Confidence 35667777777777655 5889999988643
No 66
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=32.95 E-value=89 Score=33.63 Aligned_cols=26 Identities=12% Similarity=0.288 Sum_probs=22.3
Q ss_pred cCCCcEEEEEE--eCCeeEEEEEEEcCE
Q 011344 440 RKSRLWSTVLW--LYPGTYEIKFIVDGQ 465 (488)
Q Consensus 440 kksGvWsttL~--LPPG~YEYKFIVDGe 465 (488)
..+|+|+..+. .+||.|+..+.+||.
T Consensus 168 p~DGvFT~~l~l~~~~G~Y~~~v~~~n~ 195 (374)
T TIGR03503 168 PGDGIFTGEFNLDVAPGEYRPTYQSRNP 195 (374)
T ss_pred CCCceEEEEeeccCCCceEEEEEEEcCc
Confidence 36899999875 689999999999984
No 67
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=32.74 E-value=67 Score=31.16 Aligned_cols=32 Identities=28% Similarity=0.676 Sum_probs=19.5
Q ss_pred CCCccccccCCCCCCCccccccccCCCcEEEEEEeC-CeeEEEEEE
Q 011344 417 NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLY-PGTYEIKFI 461 (488)
Q Consensus 417 NNW~~~IpM~Kqpss~~~a~~gskksGvWsttL~LP-PG~YEYKFI 461 (488)
..|+ .+||... .+..|...+.+. +|.|+|+..
T Consensus 55 ~~w~-~vpM~~~------------gnDrW~a~f~~~~~G~~~f~Ve 87 (187)
T PF11896_consen 55 REWQ-EVPMTPL------------GNDRWEASFTPDRPGRYEFRVE 87 (187)
T ss_dssp -B-----B-EES------------TS-EEEEEEE--SSEEEEEEEE
T ss_pred Ccce-eeccccC------------CCCEEEEEEECCCceeEEEEEE
Confidence 4586 5899863 678999999875 899999876
No 68
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=32.07 E-value=1e+02 Score=27.39 Aligned_cols=27 Identities=26% Similarity=0.727 Sum_probs=19.7
Q ss_pred CCcEEEEEEeCCeeEEEEEEEcCEeeeCCCC
Q 011344 442 SRLWSTVLWLYPGTYEIKFIVDGQWKVDPQR 472 (488)
Q Consensus 442 sGvWsttL~LPPG~YEYKFIVDGeW~~DPdn 472 (488)
.-.|-+. |.|-|+|.|. +|.|+++-+.
T Consensus 57 ~QIWlas---~sG~~hf~~~-~~~W~~~r~g 83 (105)
T PRK00446 57 HELWLAA---KSGGFHFDYK-DGEWICDRSG 83 (105)
T ss_pred hheeEec---CCCCccceec-CCeEEECCCC
Confidence 3567666 4687888885 9999988543
No 69
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=32.04 E-value=33 Score=25.71 Aligned_cols=38 Identities=26% Similarity=0.570 Sum_probs=22.8
Q ss_pred HHHHHHHhcCCCCCCCCChHHHHHh--chhhHHHHHHHhhHHHH
Q 011344 67 DLREFLSTVGLSESHVPSMKELSAH--GRDDLANIVRRRGYKFI 108 (488)
Q Consensus 67 d~~ef~s~~~lp~~hvps~kel~~h--gr~dlan~vrrrgyk~i 108 (488)
+++.|+..+. .=|..++-... -..+++.+.|..||.|=
T Consensus 5 ~l~~Fl~~~~----~d~~l~~~l~~~~~~~e~~~lA~~~Gy~ft 44 (49)
T PF07862_consen 5 SLKAFLEKVK----SDPELREQLKACQNPEEVVALAREAGYDFT 44 (49)
T ss_pred HHHHHHHHHh----cCHHHHHHHHhcCCHHHHHHHHHHcCCCCC
Confidence 3455555553 23333333332 56778889999999874
No 70
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.88 E-value=33 Score=38.41 Aligned_cols=24 Identities=21% Similarity=0.456 Sum_probs=21.2
Q ss_pred CCCcEEEEEEeCCe-eEEEEEEEcC
Q 011344 441 KSRLWSTVLWLYPG-TYEIKFIVDG 464 (488)
Q Consensus 441 ksGvWsttL~LPPG-~YEYKFIVDG 464 (488)
.+|.|.+.+.++|| .|.|+|.|++
T Consensus 96 ~DG~~~TqCPI~Pg~~~tY~F~v~~ 120 (563)
T KOG1263|consen 96 QDGVYITQCPIQPGENFTYRFTVKD 120 (563)
T ss_pred ccCCccccCCcCCCCeEEEEEEeCC
Confidence 45688899999999 8999999994
No 71
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=30.80 E-value=1.2e+02 Score=28.04 Aligned_cols=66 Identities=27% Similarity=0.375 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHhcCCCCC-CCCChHHHHHhchhhHHHHHHHhhHHHHHHHHhCCCCCCCCCccccccc
Q 011344 62 EELYNDLREFLSTVGLSES-HVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNGFVAEKSL 129 (488)
Q Consensus 62 ~el~~d~~ef~s~~~lp~~-hvps~kel~~hgr~dlan~vrrrgyk~i~~ll~~~~~~~~n~~~~e~~~ 129 (488)
+-+++-|++=+.+=-|+|| ++||++||..+=..-. |-| .|+|+-..+.===-+.-+..-||.|...
T Consensus 14 ~QI~~qIk~~I~~g~l~pGdkLPSvRelA~~~~VNp-nTv-~raY~eLE~eG~i~t~rg~G~fV~~~~~ 80 (125)
T COG1725 14 EQIANQIKEQIASGELKPGDKLPSVRELAKDLGVNP-NTV-QRAYQELEREGIVETKRGKGTFVTEDAK 80 (125)
T ss_pred HHHHHHHHHHHHhCCcCCCCCCCcHHHHHHHhCCCH-HHH-HHHHHHHHHCCCEEEecCeeEEEcCCch
Confidence 3466777777777777776 6999999987655443 344 4678766552111223334446665543
No 72
>PRK10785 maltodextrin glucosidase; Provisional
Probab=29.80 E-value=1.9e+02 Score=32.21 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=38.7
Q ss_pred EEEEEEEecC--CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeC--CeeEEEEEEE--cCE
Q 011344 397 EVVEIQYSGD--GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLY--PGTYEIKFIV--DGQ 465 (488)
Q Consensus 397 r~VtFtW~g~--AkeV~LAGSFNNW~~~IpM~Kqpss~~~a~~gskksGvWsttL~LP--PG~YEYKFIV--DGe 465 (488)
..++++...+ ...|.|.-..++-...++|.+... +.....|.+++.++ ++++.|.|.+ +|+
T Consensus 21 ~~~~lr~~~~~~~~~v~l~~~~~~~~~~~~m~~~~~--------~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 21 LLITLWLTGEDPPQRVMLRCEPDNEEYLLPMEKQRS--------QPQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred EEEEEEEcCCCceEEEEEEEEcCCCEEEEEeEEeec--------CCCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 4455544432 468888765565555578887521 11224699999885 7889999988 554
No 73
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=28.69 E-value=19 Score=30.71 Aligned_cols=12 Identities=67% Similarity=1.716 Sum_probs=0.0
Q ss_pred ccccCCCCCceeeEEEee
Q 011344 19 LWQWHPPRKHLSFTICCA 36 (488)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~ 36 (488)
+||||| |||.++
T Consensus 47 ~~q~HP------FTIas~ 58 (105)
T PF08022_consen 47 FWQWHP------FTIASS 58 (105)
T ss_dssp ------------------
T ss_pred cccccc------cEeecc
Confidence 799998 777544
No 74
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=27.91 E-value=56 Score=24.80 Aligned_cols=25 Identities=32% Similarity=0.643 Sum_probs=14.8
Q ss_pred EEE-EEeCCeeEEEEEEE---cCEeeeCC
Q 011344 446 STV-LWLYPGTYEIKFIV---DGQWKVDP 470 (488)
Q Consensus 446 stt-L~LPPG~YEYKFIV---DGeW~~DP 470 (488)
.+. ..||||.|.++-.+ +|.|..++
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~~~~~~~~~~~ 58 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAKDNNGKWSSDE 58 (66)
T ss_dssp EEEEES--SEEEEEEEEEEETTS-B-SS-
T ss_pred EEEEEeCCCEEEEEEEEEECCCCCcCccc
Confidence 444 46999999988876 57887765
No 75
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=26.51 E-value=4.5e+02 Score=23.13 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=16.9
Q ss_pred CCCcEEEEEEe-CCeeEEEEEEE
Q 011344 441 KSRLWSTVLWL-YPGTYEIKFIV 462 (488)
Q Consensus 441 ksGvWsttL~L-PPG~YEYKFIV 462 (488)
.+|.|.+.+.+ .+|+|..+.-+
T Consensus 110 ~~g~y~~~~~~~~~G~W~l~l~~ 132 (146)
T PF05751_consen 110 APGVYRAPVPLLKKGRWYLRLDW 132 (146)
T ss_pred CCceEEEEcCCCCCccEEEEEEE
Confidence 67888888764 78888888833
No 76
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=23.64 E-value=1.2e+02 Score=26.10 Aligned_cols=33 Identities=15% Similarity=0.137 Sum_probs=24.5
Q ss_pred CCCcEEEEEEeCCeeEEEEEEEcCEeeeCCCCCe
Q 011344 441 KSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRES 474 (488)
Q Consensus 441 ksGvWsttL~LPPG~YEYKFIVDGeW~~DPdnPt 474 (488)
..|.=++.+.|+||+|....+. |.+.+-|..|.
T Consensus 49 ~~Gqte~~I~L~PG~htLtl~~-~d~~h~~~~~~ 81 (87)
T PF14347_consen 49 GKGQTELNIELPPGKHTLTLQL-GDGDHVPHDPP 81 (87)
T ss_pred CCCEEEEEEEeCCCCEEEEEEe-CCCCcccCCCc
Confidence 3566677889999999999887 45566665554
No 77
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=22.13 E-value=2.6e+02 Score=25.19 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=11.2
Q ss_pred EEEEEEEecCCceEEE
Q 011344 397 EVVEIQYSGDGEIVEV 412 (488)
Q Consensus 397 r~VtFtW~g~AkeV~L 412 (488)
-+|+|.|...+..|..
T Consensus 23 dTV~f~n~d~~Hnv~~ 38 (116)
T TIGR02375 23 DTVTFVPTDKGHNVET 38 (116)
T ss_pred CEEEEEECCCCeeEEE
Confidence 3788888777766654
No 78
>TIGR02325 C_P_lyase_phnF phosphonates metabolism transcriptional regulator PhnF. All members of the seed alignment for this family are predicted helix-turn-helix transcriptional regulatory proteins of the broader gntR and are found associated with genes for the import and degradation of phosphonates and/or related compounds (e.g. phosphonites) with a direct C-P bond.
Probab=21.95 E-value=1.1e+02 Score=28.77 Aligned_cols=31 Identities=10% Similarity=0.235 Sum_probs=26.8
Q ss_pred chHHHHHHHHHHHhcCCCCCC-CCChHHHHHh
Q 011344 61 NEELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (488)
Q Consensus 61 ~~el~~d~~ef~s~~~lp~~h-vps~kel~~h 91 (488)
=+.+.++|++-+.+=.+++|. +||.+||.++
T Consensus 10 y~~i~~~l~~~I~~g~~~~G~~LPsE~eLa~~ 41 (238)
T TIGR02325 10 WRQIADKIEQEIAAGHLRAGDYLPAEMQLAER 41 (238)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHH
Confidence 367889999999998888876 9999999876
No 79
>TIGR02404 trehalos_R_Bsub trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli.
Probab=21.50 E-value=1.1e+02 Score=28.88 Aligned_cols=30 Identities=30% Similarity=0.508 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHhcCCCCCC-CCChHHHHHh
Q 011344 62 EELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (488)
Q Consensus 62 ~el~~d~~ef~s~~~lp~~h-vps~kel~~h 91 (488)
.++.++|++-+.+-.+++|. +||-+||.++
T Consensus 3 ~qi~~~l~~~I~~g~~~~G~~LPsE~eLa~~ 33 (233)
T TIGR02404 3 EQIYQDLEQKITHGQYKEGDYLPSEHELMDQ 33 (233)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCcCHHHHHHH
Confidence 46788999999999999886 9999999886
No 80
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=21.03 E-value=3.6e+02 Score=24.48 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=17.9
Q ss_pred EeCCeeEEEEEEE---cCEeeeCCCC
Q 011344 450 WLYPGTYEIKFIV---DGQWKVDPQR 472 (488)
Q Consensus 450 ~LPPG~YEYKFIV---DGeW~~DPdn 472 (488)
.|+||.|.++-.+ ++.|....+-
T Consensus 102 ~lk~G~Y~l~~~~~~~~~~W~f~k~F 127 (140)
T PF11797_consen 102 KLKPGKYTLKITAKSGKKTWTFTKDF 127 (140)
T ss_pred CccCCEEEEEEEEEcCCcEEEEEEEE
Confidence 5899999999888 3569876543
No 81
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.66 E-value=90 Score=35.38 Aligned_cols=27 Identities=22% Similarity=0.652 Sum_probs=22.9
Q ss_pred eCCeeEEEEEEEcCEee---eCCCCCeecc
Q 011344 451 LYPGTYEIKFIVDGQWK---VDPQRESVTK 477 (488)
Q Consensus 451 LPPG~YEYKFIVDGeW~---~DPdnPtVtD 477 (488)
-+.|.|++||-++|+|+ +|...|+..+
T Consensus 114 ~yaGif~f~~w~~G~W~~VvIDD~LP~~~~ 143 (612)
T KOG0045|consen 114 NYAGIFHFRFWQNGEWVEVVIDDRLPTSNG 143 (612)
T ss_pred ccceEEEEEEEeCCeEEEEEeeeecceEcC
Confidence 46799999999999995 5888898774
No 82
>TIGR03337 phnR transcriptional regulator protein. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Salmonella, Vibrio Aeromonas hydrophila, Hahella chejuensis and Psychromonas ingrahamii.
Probab=20.50 E-value=1.9e+02 Score=27.15 Aligned_cols=32 Identities=16% Similarity=0.148 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHhcCCCCCC-CCChHHHHHhch
Q 011344 62 EELYNDLREFLSTVGLSESH-VPSMKELSAHGR 93 (488)
Q Consensus 62 ~el~~d~~ef~s~~~lp~~h-vps~kel~~hgr 93 (488)
+.+.++|++-+..-++++|. +||.+||.+.=.
T Consensus 4 ~qi~~~l~~~I~~g~~~~g~~lPsE~eLa~~~~ 36 (231)
T TIGR03337 4 LYIKDHLSYQIRAGALLPGDKLPSERDLGERFN 36 (231)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHC
Confidence 46789999999999998885 999999998743
Done!