Query 011344
Match_columns 488
No_of_seqs 135 out of 813
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 06:11:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011344.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011344hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nme_A Ptpkis1 protein, SEX4 g 99.9 3.8E-23 1.3E-27 199.7 9.2 119 359-488 123-253 (294)
2 1z0n_A 5'-AMP-activated protei 99.9 5.4E-22 1.9E-26 165.2 9.6 81 394-488 8-89 (96)
3 2qlv_B Protein SIP2, protein S 99.9 8.8E-22 3E-26 189.4 11.1 84 395-488 2-86 (252)
4 4aee_A Alpha amylase, catalyti 99.5 4.4E-14 1.5E-18 149.3 8.2 79 394-485 15-102 (696)
5 4aef_A Neopullulanase (alpha-a 99.2 2.9E-11 9.8E-16 126.3 8.6 68 396-476 16-84 (645)
6 2z0b_A GDE5, KIAA1434, putativ 98.2 2.4E-06 8.1E-11 74.7 7.9 61 394-462 6-75 (131)
7 3c8d_A Enterochelin esterase; 98.2 3.9E-06 1.3E-10 82.9 8.8 81 394-487 28-149 (403)
8 1ac0_A Glucoamylase; hydrolase 97.8 8.9E-06 3E-10 68.0 3.7 75 395-477 5-93 (108)
9 1m7x_A 1,4-alpha-glucan branch 97.5 0.0003 1E-08 73.8 9.5 68 397-476 25-100 (617)
10 3k1d_A 1,4-alpha-glucan-branch 97.2 0.00042 1.4E-08 75.3 7.6 69 396-476 135-211 (722)
11 3aml_A OS06G0726400 protein; s 97.1 0.00052 1.8E-08 74.6 6.9 63 398-473 66-142 (755)
12 1qho_A Alpha-amylase; glycosid 96.0 0.03 1E-06 59.4 10.7 71 395-477 580-673 (686)
13 1cyg_A Cyclodextrin glucanotra 95.9 0.034 1.2E-06 58.9 10.6 74 395-477 578-667 (680)
14 1bf2_A Isoamylase; hydrolase, 95.7 0.0083 2.8E-07 64.8 5.1 56 398-466 17-85 (750)
15 2vn4_A Glucoamylase; hydrolase 95.6 0.045 1.5E-06 58.3 10.3 73 397-477 497-583 (599)
16 3vgf_A Malto-oligosyltrehalose 95.6 0.0066 2.2E-07 63.0 3.6 61 398-474 10-73 (558)
17 2laa_A Beta/alpha-amylase; SBD 95.4 0.032 1.1E-06 47.9 6.8 65 397-474 5-77 (104)
18 2wsk_A Glycogen debranching en 95.4 0.017 5.9E-07 61.3 6.0 54 398-465 20-77 (657)
19 3bmv_A Cyclomaltodextrin gluca 95.3 0.036 1.2E-06 58.7 8.2 73 395-476 582-669 (683)
20 2bhu_A Maltooligosyltrehalose 95.1 0.014 4.9E-07 61.4 4.5 61 398-475 35-96 (602)
21 2vr5_A Glycogen operon protein 95.0 0.025 8.5E-07 60.8 6.0 55 398-466 30-91 (718)
22 1d3c_A Cyclodextrin glycosyltr 94.9 0.057 1.9E-06 57.3 8.4 73 395-476 585-672 (686)
23 1vem_A Beta-amylase; beta-alph 94.2 0.066 2.3E-06 56.1 6.6 71 395-476 418-505 (516)
24 1wzl_A Alpha-amylase II; pullu 94.0 0.064 2.2E-06 55.7 6.2 60 396-463 22-87 (585)
25 4aio_A Limit dextrinase; hydro 93.8 0.056 1.9E-06 57.3 5.4 54 398-464 137-194 (884)
26 2e8y_A AMYX protein, pullulana 93.7 0.11 3.6E-06 55.8 7.3 65 398-475 114-185 (718)
27 2fhf_A Pullulanase; multiple d 93.3 0.072 2.5E-06 60.5 5.5 66 398-475 305-384 (1083)
28 1j0h_A Neopullulanase; beta-al 92.8 0.085 2.9E-06 54.8 4.6 61 395-463 21-89 (588)
29 3faw_A Reticulocyte binding pr 91.3 0.1 3.5E-06 58.0 3.4 64 399-474 146-223 (877)
30 2wan_A Pullulanase; hydrolase, 91.1 0.24 8.2E-06 55.0 6.1 62 398-473 326-397 (921)
31 1gcy_A Glucan 1,4-alpha-maltot 91.1 0.041 1.4E-06 56.5 0.0 69 396-475 430-516 (527)
32 2ya0_A Putative alkaline amylo 90.8 0.24 8.1E-06 53.1 5.5 64 398-473 25-104 (714)
33 3m07_A Putative alpha amylase; 90.6 0.37 1.3E-05 51.2 6.6 61 398-475 43-106 (618)
34 2wan_A Pullulanase; hydrolase, 88.3 0.49 1.7E-05 52.6 5.8 52 404-467 160-221 (921)
35 1ea9_C Cyclomaltodextrinase; h 86.5 0.16 5.5E-06 52.8 0.6 60 396-463 22-86 (583)
36 1ji1_A Alpha-amylase I; beta/a 86.2 0.39 1.3E-05 50.4 3.3 59 398-464 31-96 (637)
37 2ya1_A Putative alkaline amylo 85.3 0.72 2.4E-05 51.9 5.0 63 398-472 332-410 (1014)
38 2c3v_A Alpha-amylase G-6; carb 78.0 3.9 0.00013 34.9 5.8 65 397-473 10-81 (102)
39 4fch_A Outer membrane protein 77.4 1.5 5E-05 40.5 3.3 50 407-467 12-63 (221)
40 4fe9_A Outer membrane protein 54.7 10 0.00036 38.1 4.4 46 407-463 150-197 (470)
41 2eef_A Protein phosphatase 1, 47.8 23 0.00078 32.2 5.1 69 397-470 48-129 (156)
42 3tnu_B Keratin, type II cytosk 41.5 60 0.0021 27.9 6.5 64 329-392 34-97 (129)
43 4fe9_A Outer membrane protein 40.1 21 0.00072 35.9 3.9 53 407-470 260-319 (470)
44 3tnu_A Keratin, type I cytoske 37.8 55 0.0019 28.3 5.7 64 329-392 36-99 (131)
45 4dny_A Metalloprotease STCE; m 33.5 42 0.0014 29.9 4.3 24 448-472 99-123 (126)
46 3tqn_A Transcriptional regulat 32.3 38 0.0013 27.8 3.6 33 61-93 11-44 (113)
47 4ham_A LMO2241 protein; struct 31.4 38 0.0013 28.5 3.6 31 61-91 16-47 (134)
48 3qh9_A Liprin-beta-2; coiled-c 30.1 91 0.0031 26.1 5.5 37 331-367 26-62 (81)
49 4fem_A Outer membrane protein 25.9 40 0.0014 32.8 3.1 50 407-467 149-200 (358)
50 2eap_A Lymphocyte cytosolic pr 25.4 39 0.0013 28.8 2.5 34 75-108 6-39 (90)
51 3u06_A Protein claret segregat 25.3 1.9E+02 0.0065 29.5 8.1 62 329-405 8-69 (412)
52 1mhx_A Immunoglobulin-binding 24.6 24 0.00082 28.1 1.1 14 462-475 48-61 (65)
53 4fch_A Outer membrane protein 23.8 44 0.0015 30.6 2.8 49 408-466 117-169 (221)
54 2jnz_A PHL P 3 allergen; timot 23.8 1.2E+02 0.0042 26.0 5.4 57 397-469 28-90 (108)
55 4egu_A Histidine triad (HIT) p 23.8 44 0.0015 27.4 2.6 34 77-111 44-77 (119)
56 4aef_A Neopullulanase (alpha-a 23.7 89 0.003 32.7 5.4 50 397-462 125-178 (645)
57 3neu_A LIN1836 protein; struct 23.4 73 0.0025 26.6 3.9 33 61-93 15-48 (125)
58 2djm_A Glucoamylase A; beta sa 23.0 1.2E+02 0.0041 25.8 5.2 64 398-465 22-91 (106)
59 1zxa_A CGMP-dependent protein 21.7 68 0.0023 25.8 3.2 33 330-362 24-56 (67)
60 1igd_A Protein G; immunoglobul 20.7 33 0.0011 27.3 1.1 14 462-475 44-57 (61)
No 1
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}
Probab=99.88 E-value=3.8e-23 Score=199.73 Aligned_cols=119 Identities=24% Similarity=0.364 Sum_probs=99.7
Q ss_pred HHHHHHhhhhhhccchhhhhcccchHH------HHHHHhh-C--CCcEEEEEEEec-CCceEEEEeeeCCCccccccCCC
Q 011344 359 LALSVLQTKAVTEINKAEKLISDKDEE------LIAAEES-L--SGLEVVEIQYSG-DGEIVEVAGSFNGWHHRIKMDPL 428 (488)
Q Consensus 359 ~aLa~l~~k~~~ei~~AqkLlseK~~~------LdaAeea-L--sgLr~VtFtW~g-~AkeV~LAGSFNNW~~~IpM~Kq 428 (488)
.++|||-.+.+..+.+|-..+.++++. +..|... | -..++|+|+|++ +|++|+|+|+|+||+.+++|.|+
T Consensus 123 vv~ayLm~~~g~s~~~A~~~v~~~Rp~~Pn~~~l~~~~~~~L~~~~k~~v~f~~~~~~~~~V~v~GsF~~W~~~~~l~k~ 202 (294)
T 3nme_A 123 VALTYMFWVQGYKLMEAHKLLMSKRSCFPKLDAIRNATIDILTGLKRKTVTLTLKDKGFSRVEISGLDIGWGQRIPLTLG 202 (294)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECSSCSCEEEEETTTEEEEEEECEEC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCCCChhhhhHHHHHhhhccccccceeeeccCCCCEEEEEEeccCCCCcccceEc
Confidence 677888888888999999888777652 2222222 3 334899999999 59999999999999988999985
Q ss_pred CCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCEeeeCCCCCee-cc-CCccceEEEeC
Q 011344 429 PSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV-TK-GGICNNILRVI 488 (488)
Q Consensus 429 pss~~~a~~gskksGvWsttL~LPPG~YEYKFIVDGeW~~DPdnPtV-tD-gGnvNNVLeVe 488 (488)
...|.|++++.||||.|+|||+|||+|++||++|.+ .+ .|+.||||.|.
T Consensus 203 -----------~~~g~~~~~~~L~~G~y~YkFiVDG~w~~d~~~~~~~~d~~G~~nn~~~v~ 253 (294)
T 3nme_A 203 -----------KGTGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGHTNNYAKVV 253 (294)
T ss_dssp -----------TTTCEEEEEEEECSEEEEEEEEETTEEECCTTSCEECSCTTSCCEEEEEEC
T ss_pred -----------CCCCEEEEEEECCCceEEEEEEECCEEeeCCCCCeeeECCCCCEeEEEEEC
Confidence 247999999999999999999999999999999987 45 79999999984
No 2
>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A
Probab=99.86 E-value=5.4e-22 Score=165.19 Aligned_cols=81 Identities=35% Similarity=0.593 Sum_probs=73.4
Q ss_pred CCcEEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCEeeeCCCCC
Q 011344 394 SGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRE 473 (488)
Q Consensus 394 sgLr~VtFtW~g~AkeV~LAGSFNNW~~~IpM~Kqpss~~~a~~gskksGvWsttL~LPPG~YEYKFIVDGeW~~DPdnP 473 (488)
...++|+|+|..+|+.|+|+|+||+|+ .++|.+. .|.|++++.|++|.|+|||+|||+|++||.+|
T Consensus 8 ~~~~~v~F~wap~a~~V~v~GdFn~W~-~~~m~~~-------------~g~w~~~v~l~~G~~~YKf~VdG~~~~DP~~~ 73 (96)
T 1z0n_A 8 AQARPTVFRWTGGGKEVYLSGSFNNWS-KLPMTRS-------------QNNFVAILDLPEGEHQYKFFVDGQWTHDPSEP 73 (96)
T ss_dssp --CEEEEEEECSCCSCEEEEEGGGTTC-CEECEEE-------------TTEEEEEEEECSEEEEEEEEETTEEECCTTSC
T ss_pred CCceEEEEEECCCCcEEEEEEEeCCCc-cccCEEC-------------CCEEEEEEEccCCCEEEEEEECCeEEcCCCCC
Confidence 456899999998899999999999999 7899862 48999999999999999999999999999999
Q ss_pred eecc-CCccceEEEeC
Q 011344 474 SVTK-GGICNNILRVI 488 (488)
Q Consensus 474 tVtD-gGnvNNVLeVe 488 (488)
++.+ .|+.||+|.|.
T Consensus 74 ~~~d~~G~~Nnvi~V~ 89 (96)
T 1z0n_A 74 IVTSQLGTVNNIIQVK 89 (96)
T ss_dssp EEECTTSCEEEEEEEC
T ss_pred eEECCCCCEeEEEEEc
Confidence 9887 69999999984
No 3
>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1
Probab=99.86 E-value=8.8e-22 Score=189.45 Aligned_cols=84 Identities=31% Similarity=0.438 Sum_probs=77.1
Q ss_pred CcEEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCEeeeCCCCCe
Q 011344 395 GLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRES 474 (488)
Q Consensus 395 gLr~VtFtW~g~AkeV~LAGSFNNW~~~IpM~Kqpss~~~a~~gskksGvWsttL~LPPG~YEYKFIVDGeW~~DPdnPt 474 (488)
.+++|+|+|+++|++|+|+|+|++|++.++|.|.. .++|.|++++.|+||.|+|||+|||+|++||++|+
T Consensus 2 ~~vpv~f~W~~~a~~V~V~GsF~~W~~~~~m~k~~----------~~~G~f~~tv~LppG~y~YKFiVDG~w~~Dp~~p~ 71 (252)
T 2qlv_B 2 LMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDS----------DNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLPT 71 (252)
T ss_dssp CCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECS----------SSTTCEEEEEEECSEEEEEEEEETTEEECCTTSCE
T ss_pred CcEEEEEEEeCCCcEEEEEEEeCCCcCcccceecc----------CCCCcEEEEEECCCCEEEEEEEECCEEEeCCCCCE
Confidence 46899999999999999999999999888998741 35799999999999999999999999999999999
Q ss_pred ecc-CCccceEEEeC
Q 011344 475 VTK-GGICNNILRVI 488 (488)
Q Consensus 475 VtD-gGnvNNVLeVe 488 (488)
+.+ .|+.||+|.|.
T Consensus 72 ~~d~~G~~nNvi~V~ 86 (252)
T 2qlv_B 72 ATDQMGNFVNYIEVR 86 (252)
T ss_dssp EBCSSCCCEEEEEEC
T ss_pred EecCCCcCcceeecc
Confidence 987 69999999984
No 4
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}
Probab=99.47 E-value=4.4e-14 Score=149.31 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=67.5
Q ss_pred CCcEEEEEEEec--CCceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCEee--e
Q 011344 394 SGLEVVEIQYSG--DGEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK--V 468 (488)
Q Consensus 394 sgLr~VtFtW~g--~AkeV~LAGSFNNW~~~-IpM~Kqpss~~~a~~gskksGvWsttL~LPPG~YEYKFIVDGeW~--~ 468 (488)
.+..+|+|+++. +|++|+|+|+||+|++. .+|.+ .+|.|++++.||||.|||||+|||+|. +
T Consensus 15 ~~~~~v~f~~~~~~~~~~v~~~G~Fn~w~~~~~~~~~-------------~~~~~~~~~~L~~g~~~y~f~vdg~~~~~~ 81 (696)
T 4aee_A 15 KGRYIVKFTRHWPQYAKNIYLIGEFTSLYPGFVKLRK-------------IEEQGIVYLKLWPGEYGYGFQIDNDFENVL 81 (696)
T ss_dssp EEEEEEEEEEECCTTCSCEEEEETTSCSSTTSCBCEE-------------ETTEEEEEEEECSEEEEEEEEETTCCSCCC
T ss_pred CCcEEEEEEEECCCCCcEEEEEEecCCCCCCCcceEe-------------cCCeEEEEEEcCCceEEEEEEECCEEeecC
Confidence 456789999987 59999999999999754 67765 379999999999999999999999999 8
Q ss_pred CCCCCeec--c--CCccceEE
Q 011344 469 DPQRESVT--K--GGICNNIL 485 (488)
Q Consensus 469 DPdnPtVt--D--gGnvNNVL 485 (488)
||++|... + .|..|+|.
T Consensus 82 d~~~~~~~y~~~~~g~~n~~~ 102 (696)
T 4aee_A 82 DPDNEEKKCVHTSFFPEYKKC 102 (696)
T ss_dssp CTTCCCEEEEECSSCTTSEEE
T ss_pred CCCCCcccccccCCcccccee
Confidence 89888755 3 47899985
No 5
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=99.18 E-value=2.9e-11 Score=126.32 Aligned_cols=68 Identities=22% Similarity=0.510 Sum_probs=60.4
Q ss_pred cEEEEEEEecCCceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCEeeeCCCCCe
Q 011344 396 LEVVEIQYSGDGEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRES 474 (488)
Q Consensus 396 Lr~VtFtW~g~AkeV~LAGSFNNW~~~-IpM~Kqpss~~~a~~gskksGvWsttL~LPPG~YEYKFIVDGeW~~DPdnPt 474 (488)
+..|.|.++..|+.|+|.|+||+|.+. .+|++ .++.|.+++.||||.|+|||+|||+|..||.+|.
T Consensus 16 ~~~~~~~~~~~~~~~yl~G~Fn~w~~~~~~m~~-------------~g~~~~~~v~L~~G~y~Y~f~vdg~~~~dp~n~~ 82 (645)
T 4aef_A 16 VAEVEFSLIREGSYAYLLGDFNAFNEGSFRMEQ-------------EGKNWKIKIALPEGVWHYAFSIDGKFVLDPDNPE 82 (645)
T ss_dssp EEEEEEEEECCSSCEEEEETTTTTCTTSSEEEE-------------CSSEEEEEEEECSEEEEEEEEETTEEECCTTCCC
T ss_pred EEEEEEecCCCCeEEEEEEcCCCCCCCcccceE-------------cCCEEEEEEEeCCceEEEEEEECCeEecCCCCCC
Confidence 468899999999999999999999864 56764 5689999999999999999999999999999987
Q ss_pred ec
Q 011344 475 VT 476 (488)
Q Consensus 475 Vt 476 (488)
..
T Consensus 83 ~~ 84 (645)
T 4aef_A 83 RR 84 (645)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 6
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}
Probab=98.24 E-value=2.4e-06 Score=74.70 Aligned_cols=61 Identities=25% Similarity=0.574 Sum_probs=48.6
Q ss_pred CCcEEEEEEEecC---CceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 011344 394 SGLEVVEIQYSGD---GEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 462 (488)
Q Consensus 394 sgLr~VtFtW~g~---AkeV~LAGS---FNNW~~~--IpM~Kqpss~~~a~~gskksGvWsttL~LPPG-~YEYKFIV 462 (488)
...+.|+|+.... ++.|+|+|+ +.+|++. ++|....- ....+.|++++.||+| .+||||+|
T Consensus 6 ~~~v~V~F~v~~~~~~ge~v~vvGs~~~LG~W~p~~av~L~~~~~--------~~~~~~W~~~v~lp~~~~~eYKyvi 75 (131)
T 2z0b_A 6 SGPSQVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPEND--------TGESMLWKATIVLSRGVSVQYRYFK 75 (131)
T ss_dssp CCCEEEEEEEECCCCTTCEEEEEESSGGGTTTCGGGCEECEECCT--------TCCSSEEEEEEEECTTCCEEEEEEE
T ss_pred CCeEEEEEEEeeecCCCCEEEEEeCCCcCCCCCcccccccccccc--------CCCCCeEEEEEEcCCCCcEEEEEEE
Confidence 3457899999773 899999999 8999974 67875310 1257899999999998 69999999
No 7
>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A*
Probab=98.17 E-value=3.9e-06 Score=82.94 Aligned_cols=81 Identities=21% Similarity=0.206 Sum_probs=64.4
Q ss_pred CCcEEEEEEEecC-C-------ceEEEEeeeCCCcc------ccccCCCCCCCccccccccCCCcEEEEEEeCCeeE-EE
Q 011344 394 SGLEVVEIQYSGD-G-------EIVEVAGSFNGWHH------RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTY-EI 458 (488)
Q Consensus 394 sgLr~VtFtW~g~-A-------keV~LAGSFNNW~~------~IpM~Kqpss~~~a~~gskksGvWsttL~LPPG~Y-EY 458 (488)
.+.+.|||.|.++ | +.|+|. +++|.. +.+|+|. ..+|+|..++.|++|.| .|
T Consensus 28 ~~~~~vtF~~~~p~a~~~~~~~~~V~~~--~~~~~d~~~~~~~~~m~r~-----------~~~~~W~~t~~l~~~~~~~Y 94 (403)
T 3c8d_A 28 DEMFEVTFWWRDPQGSEEYSTIKRVWVY--ITGVTDHHQNSQPQSMQRI-----------AGTDVWQWTTQLNANWRGSY 94 (403)
T ss_dssp SSEEEEEEEEECTTCSTTTCCCCEEEEE--ETTTC-------CCBCEEC-----------TTSSEEEEEEEEETTCEEEE
T ss_pred CCcEEEEEEeeCCCcccccCccceEEEE--CcCCCccccccCccccccC-----------CCCCeEEEEEEECCCcEEEE
Confidence 4568999999987 5 789998 344432 2368764 36899999999999999 99
Q ss_pred EEEEc------------------------CEeeeCCCCCeecc-C-CccceEEEe
Q 011344 459 KFIVD------------------------GQWKVDPQRESVTK-G-GICNNILRV 487 (488)
Q Consensus 459 KFIVD------------------------GeW~~DPdnPtVtD-g-GnvNNVLeV 487 (488)
.|+|| |..+.||.+|.... + |...++|+|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~r~~w~~~~~~~~~DP~n~~~~~~~~~~~~s~~~~ 149 (403)
T 3c8d_A 95 CFIPTERDDIFSAPSPDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALEM 149 (403)
T ss_dssp EEEEESCCSTTCCC--CHHHHHHHHHHHGGGCBCCTTCSSEECCSSSSCEEEEEC
T ss_pred EEEecCcccccccccchHHHHHHHHHHhhcccccCCCCCCCCCCCCCcccccccC
Confidence 99999 77889999998764 4 677788875
No 8
>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A
Probab=97.84 E-value=8.9e-06 Score=67.96 Aligned_cols=75 Identities=27% Similarity=0.509 Sum_probs=55.5
Q ss_pred CcEEEEEEEecC---CceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEEc--
Q 011344 395 GLEVVEIQYSGD---GEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVD-- 463 (488)
Q Consensus 395 gLr~VtFtW~g~---AkeV~LAGSF---NNW~~~--IpM~Kqpss~~~a~~gskksGvWsttL~LPPG-~YEYKFIVD-- 463 (488)
+...|+|...+. |+.|+|+|+. .+|++. ++|.... -..+.+.|++++.||+| .+||||+|.
T Consensus 5 ~~v~V~F~v~~~t~~Ge~v~vvGs~~~LG~W~~~~a~~l~~~~--------~~~~~~~W~~~v~lp~~~~~eYKy~v~~~ 76 (108)
T 1ac0_A 5 TAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADK--------YTSSDPLWYVTVTLPAGESFEYKFIRIES 76 (108)
T ss_dssp CCCCEEEEEECCCCSSCCEECCCSSSTTCSSSGGGSCCBBCSS--------SSSSCSSCEEEECCCSSSCEECCCEECCS
T ss_pred CeEEEEEEEeeECCCCCEEEEEeCcHHHCCCCHHHCccccccc--------cCCcCCeEEEEEEeCCCCeEEEEEEEEcC
Confidence 456788888764 8999999986 589864 6787531 00145899999999999 599999993
Q ss_pred -C--EeeeCCCCCeecc
Q 011344 464 -G--QWKVDPQRESVTK 477 (488)
Q Consensus 464 -G--eW~~DPdnPtVtD 477 (488)
| .|-.+|+.-...+
T Consensus 77 ~g~~~WE~g~nR~~~~p 93 (108)
T 1ac0_A 77 DDSVEWESDPNREYTVP 93 (108)
T ss_dssp SSCCCCCCSSCCEECCC
T ss_pred CCCEEeccCCCEEEECC
Confidence 3 4888876655544
No 9
>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*
Probab=97.47 E-value=0.0003 Score=73.83 Aligned_cols=68 Identities=24% Similarity=0.357 Sum_probs=53.2
Q ss_pred EEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEE---cCEe--ee
Q 011344 397 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV---DGQW--KV 468 (488)
Q Consensus 397 r~VtFtW~g~-AkeV~LAGSFNNW~~~-IpM~Kqpss~~~a~~gskksGvWsttL~-LPPG~YEYKFIV---DGeW--~~ 468 (488)
..|+|+..++ |+.|.|.|+|++|... ++|.+. ...|+|++++. +.+|.+ |+|.| ||.+ ..
T Consensus 25 ~gv~F~vwAP~A~~V~L~gdfn~~~~~~~~M~~~-----------~~~GvW~~~v~~~~~g~~-Y~f~i~~~~g~~~~~~ 92 (617)
T 1m7x_A 25 TGTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLR-----------KESGIWELFIPGAHNGQL-YKYEMIDANGNLRLKS 92 (617)
T ss_dssp EEEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCC-----------TTTTEEEEEEETCCTTCE-EEEEEECTTSCEEEEC
T ss_pred CcEEEEEECCCCCEEEEEEEeCCCCCceeEeEEC-----------CCCCEEEEEEcCCCCCCE-EEEEEEcCCCcEEEec
Confidence 5799998776 9999999999999743 789863 25799999997 788875 99999 6775 56
Q ss_pred CCCCCeec
Q 011344 469 DPQRESVT 476 (488)
Q Consensus 469 DPdnPtVt 476 (488)
||-.....
T Consensus 93 DPya~~~~ 100 (617)
T 1m7x_A 93 DPYAFEAQ 100 (617)
T ss_dssp CTTCSSEE
T ss_pred Cccceeec
Confidence 77554433
No 10
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}
Probab=97.24 E-value=0.00042 Score=75.27 Aligned_cols=69 Identities=26% Similarity=0.343 Sum_probs=53.6
Q ss_pred cEEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEE---cCEe--e
Q 011344 396 LEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV---DGQW--K 467 (488)
Q Consensus 396 Lr~VtFtW~g~-AkeV~LAGSFNNW~~~-IpM~Kqpss~~~a~~gskksGvWsttL~-LPPG~YEYKFIV---DGeW--~ 467 (488)
...|.|+..++ |+.|.|.|+||+|+.. .+|.+. ...|+|.+.+. +.+|. .|||.| ||+| +
T Consensus 135 ~~g~~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~-----------~~~GvW~~~i~~~~~g~-~Y~y~i~~~~g~~~~~ 202 (722)
T 3k1d_A 135 VSGVSFAVWAPNAKGVSLIGEFNGWNGHEAPMRVL-----------GPSGVWELFWPDFPCDG-LYKFRVHGADGVVTDR 202 (722)
T ss_dssp EEEEEEEEECTTCSEEEEEEGGGTTCCCSCBCEEC-----------GGGCEEEEEEETCCTTC-EEEEEEECTTSCEEEE
T ss_pred CceEEEEEECCCCCEEEEEeecCCCCCCcccCEEc-----------CCCCEEEEEeCCCCCCC-EEEEEEEcCCCcEEEe
Confidence 45789999887 9999999999999854 688763 24699999996 88895 588888 5765 6
Q ss_pred eCCCCCeec
Q 011344 468 VDPQRESVT 476 (488)
Q Consensus 468 ~DPdnPtVt 476 (488)
.||-.-.+.
T Consensus 203 ~DPya~~~~ 211 (722)
T 3k1d_A 203 ADPFAFGTE 211 (722)
T ss_dssp CCTTCSSBC
T ss_pred ecccceeec
Confidence 787655443
No 11
>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A
Probab=97.14 E-value=0.00052 Score=74.64 Aligned_cols=63 Identities=21% Similarity=0.400 Sum_probs=49.3
Q ss_pred EEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-------eCCeeEEEEEEEc---CE
Q 011344 398 VVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-------LYPGTYEIKFIVD---GQ 465 (488)
Q Consensus 398 ~VtFtW~g~-AkeV~LAGSFNNW~~~-IpM~Kqpss~~~a~~gskksGvWsttL~-------LPPG~YEYKFIVD---Ge 465 (488)
.|+|+..++ |+.|+|.|+|++|... ++|.+. ..|+|.+.+. +++|.+ |||.|+ |.
T Consensus 66 gv~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~------------~~GvW~~~v~~~~g~~~i~~g~~-Y~y~i~~~~g~ 132 (755)
T 3aml_A 66 ATIYREWAPAAQEAQLIGEFNNWNGAKHKMEKD------------KFGIWSIKISHVNGKPAIPHNSK-VKFRFRHGGGA 132 (755)
T ss_dssp EEEEEEECTTCSEEEEEEGGGTTCCTTCBCEEC------------TTSEEEEEEECBTTBCSSCTTEE-EEEEEECTTCC
T ss_pred eEEEEEECCCCCEEEEEEecCCCCCceeeceeC------------CCCEEEEEEcccccccCCCCCCE-EEEEEECCCCc
Confidence 688988776 9999999999999754 788763 5799999998 788875 888886 45
Q ss_pred e--eeCCCCC
Q 011344 466 W--KVDPQRE 473 (488)
Q Consensus 466 W--~~DPdnP 473 (488)
| +.||-..
T Consensus 133 ~~~~~dpya~ 142 (755)
T 3aml_A 133 WVDRIPAWIR 142 (755)
T ss_dssp CEEECCTTCS
T ss_pred EEecCCcchh
Confidence 6 3466433
No 12
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Probab=95.98 E-value=0.03 Score=59.40 Aligned_cols=71 Identities=21% Similarity=0.388 Sum_probs=53.1
Q ss_pred CcEEEEEEEec-----CCceEEEEeee---CCCcc--------cc-ccCCCCCCCccccccccCCCcEEEEEEeCCe-eE
Q 011344 395 GLEVVEIQYSG-----DGEIVEVAGSF---NGWHH--------RI-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TY 456 (488)
Q Consensus 395 gLr~VtFtW~g-----~AkeV~LAGSF---NNW~~--------~I-pM~Kqpss~~~a~~gskksGvWsttL~LPPG-~Y 456 (488)
..+.|+|+..+ .|+.|+|+|+. .+|++ .+ +|.. .....|++++.||+| .+
T Consensus 580 ~~v~v~F~v~~~~t~~~G~~l~v~G~~~~LG~W~~~~~~~~~~a~~~l~~------------~~~~~W~~~v~l~~~~~~ 647 (686)
T 1qho_A 580 TQTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLA------------PNYPDWFYVFSVPAGKTI 647 (686)
T ss_dssp SEEEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBC------------TTTTSEEEEEEEETTCEE
T ss_pred CeEEEEEEEecccCCCCCCEEEEEeChHHhCCCCCccccchhhhhccccc------------CCCCcEEEEEEeCCCCeE
Confidence 35788898876 37899999998 48987 23 4542 356799999999998 69
Q ss_pred EEEEEE---cC--EeeeCCCCCeecc
Q 011344 457 EIKFIV---DG--QWKVDPQRESVTK 477 (488)
Q Consensus 457 EYKFIV---DG--eW~~DPdnPtVtD 477 (488)
||||+| +| .|-..|+.-...+
T Consensus 648 eyKy~~~~~~~~~~We~~~nr~~~~~ 673 (686)
T 1qho_A 648 QFKFFIKRADGTIQWENGSNHVATTP 673 (686)
T ss_dssp EEEEEEECTTSCEEECCSSCEEEECC
T ss_pred EEEEEEEcCCCCEEeCCCCCeeEECC
Confidence 999998 33 4777776655444
No 13
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1
Probab=95.89 E-value=0.034 Score=58.93 Aligned_cols=74 Identities=22% Similarity=0.316 Sum_probs=54.4
Q ss_pred CcEEEEEEEec----CCceEEEEeeeC---CCccc--c-ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE-
Q 011344 395 GLEVVEIQYSG----DGEIVEVAGSFN---GWHHR--I-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV- 462 (488)
Q Consensus 395 gLr~VtFtW~g----~AkeV~LAGSFN---NW~~~--I-pM~Kqpss~~~a~~gskksGvWsttL~LPPG-~YEYKFIV- 462 (488)
+.+.|+|+... .|+.|+|+|+-. +|++. + +|.... ......|++++.||.| .+||||++
T Consensus 578 ~~v~v~f~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~~l~~~~---------~~~~~~W~~~v~lp~~~~~eyK~v~~ 648 (680)
T 1cyg_A 578 DQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQV---------VYSYPTWYIDVSVPEGKTIEFKFIKK 648 (680)
T ss_dssp CEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSS---------SSCTTCEEEEEEEESSCEEEEEEEEE
T ss_pred CeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhcccc---------CCCCCcEEEEEEeCCCCcEEEEEEEE
Confidence 45789999976 389999999874 99865 5 565410 0256899999999988 89999998
Q ss_pred --cC--EeeeCCCCCeecc
Q 011344 463 --DG--QWKVDPQRESVTK 477 (488)
Q Consensus 463 --DG--eW~~DPdnPtVtD 477 (488)
+| .|-..++.-...+
T Consensus 649 ~~~~~~~WE~g~Nr~~~~~ 667 (680)
T 1cyg_A 649 DSQGNVTWESGSNHVYTTP 667 (680)
T ss_dssp CTTSCEEECCSSCEEEECC
T ss_pred eCCCCeEeCCCCCeeEECC
Confidence 34 4777666555444
No 14
>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=95.70 E-value=0.0083 Score=64.81 Aligned_cols=56 Identities=9% Similarity=0.094 Sum_probs=44.8
Q ss_pred EEEEEEecC-CceEEEEeeeCCCcc-----ccccCCCCCCCccccccccCCCcEEEEEE-eC------CeeEEEEEEEcC
Q 011344 398 VVEIQYSGD-GEIVEVAGSFNGWHH-----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LY------PGTYEIKFIVDG 464 (488)
Q Consensus 398 ~VtFtW~g~-AkeV~LAGSFNNW~~-----~IpM~Kqpss~~~a~~gskksGvWsttL~-LP------PG~YEYKFIVDG 464 (488)
.|.|+..++ |+.|+|.+ |++|.. .++|.+. ..|+|.+.+. +. +|.|.|+|.|+|
T Consensus 17 ~~~F~vwap~A~~V~l~l-~~~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~~~~~~~g~y~Y~y~v~g 83 (750)
T 1bf2_A 17 NITFRVYSSQATRIVLYL-YSAGYGVQESATYTLSPA------------GSGVWAVTVPVSSIKAAGITGAVYYGYRAWG 83 (750)
T ss_dssp EEEEEEECSSCSEEEEEE-ESSSSSCCCSEEEECEEC------------STTEEEEEEEHHHHHHTTCCSCCEEEEEEEB
T ss_pred EEEEEEECCCCCEEEEEE-EccCCCCccceEEecccC------------CCCEEEEEECCcccccccCCCCEEEEEEEEe
Confidence 388988776 99999998 987653 4677652 4699999986 67 999999999997
Q ss_pred Ee
Q 011344 465 QW 466 (488)
Q Consensus 465 eW 466 (488)
.|
T Consensus 84 ~~ 85 (750)
T 1bf2_A 84 PN 85 (750)
T ss_dssp TT
T ss_pred ee
Confidence 54
No 15
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=95.63 E-value=0.045 Score=58.30 Aligned_cols=73 Identities=26% Similarity=0.501 Sum_probs=52.7
Q ss_pred EEEEEEEecC---CceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE-c--C
Q 011344 397 EVVEIQYSGD---GEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV-D--G 464 (488)
Q Consensus 397 r~VtFtW~g~---AkeV~LAGSF---NNW~~~--IpM~Kqpss~~~a~~gskksGvWsttL~LPPG-~YEYKFIV-D--G 464 (488)
+.|+|+..+. |+.|+|+|+- .+|++. ++|.... -......|++++.||+| .+||||+| | |
T Consensus 497 v~v~F~v~~~t~~Ge~l~vvGs~~~LG~W~~~~a~~L~~~~--------~t~~~~~W~~~v~lp~~~~~eYKyvv~~~~g 568 (599)
T 2vn4_A 497 VAVTFHELVSTQFGQTVKVAGNAAALGNWSTSAAVALDAVN--------YADNHPLWIGTVNLEAGDVVEYKYINVGQDG 568 (599)
T ss_dssp EEEEEEEECCCCTTCEEEEEESSGGGTTTCTTTSEECBCTT--------CBTTBCEEEEEEEEETTCEEEEEEEEECTTC
T ss_pred EEEEEEEeEEcCCCCEEEEEecccCCCCcChhheeeccccc--------CCCCCCcEEEEEEcCCCCcEEEEEEEECCCC
Confidence 6789988774 8999999988 489864 6787531 00124799999999998 69999998 2 3
Q ss_pred --EeeeCCCCCeecc
Q 011344 465 --QWKVDPQRESVTK 477 (488)
Q Consensus 465 --eW~~DPdnPtVtD 477 (488)
.|-..|+.-...+
T Consensus 569 ~~~WE~g~NR~~~~p 583 (599)
T 2vn4_A 569 SVTWESDPNHTYTVP 583 (599)
T ss_dssp CEEECCSSCEEEECC
T ss_pred ceEeCCCCCEEEecC
Confidence 3766665554443
No 16
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A
Probab=95.57 E-value=0.0066 Score=63.04 Aligned_cols=61 Identities=13% Similarity=0.073 Sum_probs=50.6
Q ss_pred EEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCE-eeeCCCCCe
Q 011344 398 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ-WKVDPQRES 474 (488)
Q Consensus 398 ~VtFtW~g~-AkeV~LAGSFNNW~~~IpM~Kqpss~~~a~~gskksGvWsttL~-LPPG~YEYKFIVDGe-W~~DPdnPt 474 (488)
.|.|+..++ |+.|.|.|.|+ ..++|.+. ..|+|.+.+. +.+|. .|+|.|||. ...||-...
T Consensus 10 ~~~f~vwap~a~~v~l~~~~~---~~~~m~~~------------~~g~w~~~~~~~~~g~-~Y~~~~~~~~~~~DP~~~~ 73 (558)
T 3vgf_A 10 EVIFTLWAPYQKSVKLKVLEK---GLYEMERD------------EKGYFTITLNNVKVRD-RYKYVLDDASEIPDPASRY 73 (558)
T ss_dssp EEEEEEECTTCSCCEEEETTT---EEEECEEC------------TTCEEEEEESSCCTTC-EEEEECTTSCEECCTTCSC
T ss_pred cEEEEEECCCCCEEEEEEecC---ceeecccC------------CCCEEEEEECCCCCCC-EEEEEEeCCccccCcchhh
Confidence 688998887 99999999987 56899864 5699999996 88995 699999997 788886543
No 17
>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A
Probab=95.43 E-value=0.032 Score=47.93 Aligned_cols=65 Identities=17% Similarity=0.246 Sum_probs=50.3
Q ss_pred EEEEEEEecCCceEEEEeeeC--CCccc--cccCCCCCCCccccccccCCCcE-EEEEEeCCe-eEEEEEEEcCE--eee
Q 011344 397 EVVEIQYSGDGEIVEVAGSFN--GWHHR--IKMDPLPSSSIIEPIRSRKSRLW-STVLWLYPG-TYEIKFIVDGQ--WKV 468 (488)
Q Consensus 397 r~VtFtW~g~AkeV~LAGSFN--NW~~~--IpM~Kqpss~~~a~~gskksGvW-sttL~LPPG-~YEYKFIVDGe--W~~ 468 (488)
..|+|.|..+++.|+|-..+. +|... ++|.+. .-..| ..++.|+.| .++|+|. ||. |-.
T Consensus 5 ~~vtiyY~~g~~~vylHyg~~~g~Wt~~~~v~M~~~------------~~~gw~~~TI~l~~g~~~~~~F~-dG~~~WDN 71 (104)
T 2laa_A 5 NKVTIYYKKGFNSPYIHYRPAGGSWTAAPGVKMQDA------------EISGYAKITVDIGSASQLEAAFN-DGNNNWDS 71 (104)
T ss_dssp CEEEEEEECSSSSCEEEEEETTSCCCSSSCEECEEE------------TTTTEEEEEEECTTCSCEEEEEE-CSSSCEES
T ss_pred CEEEEEEcCCCCcEEEEEcCCCCCCCcCCccccccc------------cCCCeEEEEEECCCCCEEEEEEe-CCCCcCcC
Confidence 578999998899999999984 89865 578652 21246 699999976 8999995 874 988
Q ss_pred CCCCCe
Q 011344 469 DPQRES 474 (488)
Q Consensus 469 DPdnPt 474 (488)
++....
T Consensus 72 n~g~Ny 77 (104)
T 2laa_A 72 NNTKNY 77 (104)
T ss_dssp TTTSCE
T ss_pred CCCccE
Confidence 776654
No 18
>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}
Probab=95.36 E-value=0.017 Score=61.29 Aligned_cols=54 Identities=24% Similarity=0.334 Sum_probs=44.1
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCE
Q 011344 398 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ 465 (488)
Q Consensus 398 ~VtFtW~g~-AkeV~LAGSFNNW~--~~IpM~Kqpss~~~a~~gskksGvWsttL~-LPPG~YEYKFIVDGe 465 (488)
.|.|+..++ |+.|.|.+ |+++. ..++|.+. ..|+|.+.+. +.+|.+ |+|.|+|.
T Consensus 20 g~~F~vwap~A~~V~l~~-f~~~~~~~~~~m~~~------------~~g~w~~~v~~~~~g~~-Y~y~v~~~ 77 (657)
T 2wsk_A 20 GVNFTLFSAHAERVELCV-FDANGQEHRYDLPGH------------SGDIWHGYLPDARPGLR-YGYRVHGP 77 (657)
T ss_dssp EEEEEEECSSCSEEEEEE-ECTTCCEEEEECCEE------------ETTEEEEEEETCCTTCE-EEEEEECC
T ss_pred eEEEEEECCCCCEEEEEE-ECCCCCEEEEeCcCC------------CCCEEEEEECCCCCCCE-EEEEEeee
Confidence 588988776 99999999 98765 35788752 5699999885 789987 99999984
No 19
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A
Probab=95.30 E-value=0.036 Score=58.72 Aligned_cols=73 Identities=22% Similarity=0.330 Sum_probs=52.2
Q ss_pred CcEEEEEEEec----CCceEEEEeeeC---CCccc--c-ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE-
Q 011344 395 GLEVVEIQYSG----DGEIVEVAGSFN---GWHHR--I-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV- 462 (488)
Q Consensus 395 gLr~VtFtW~g----~AkeV~LAGSFN---NW~~~--I-pM~Kqpss~~~a~~gskksGvWsttL~LPPG-~YEYKFIV- 462 (488)
+.+.|+|+... .|+.|+|+|+-. +|++. + +|.... ......|++++.||+| .+||||++
T Consensus 582 ~~v~v~f~v~~~~~~~g~~v~v~G~~~~LG~W~~~~a~~~l~~~~---------~~~~~~W~~~v~lp~~~~~eyK~~~~ 652 (683)
T 3bmv_A 582 NQICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQV---------VYQYPTWYYDVSVPAGTTIQFKFIKK 652 (683)
T ss_dssp SEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCSS---------SSCTTSEEEEEEEETTCEEEEEEEEE
T ss_pred CeEEEEEEEEeccCCCCCEEEEEeCcHHhCCCChhhhhhhhcccC---------CCCCCcEEEEEEeCCCCcEEEEEEEE
Confidence 35789999976 389999999885 99864 5 665410 0256899999999988 89999997
Q ss_pred cC---EeeeCCCCCeec
Q 011344 463 DG---QWKVDPQRESVT 476 (488)
Q Consensus 463 DG---eW~~DPdnPtVt 476 (488)
|+ .|-..++.-...
T Consensus 653 ~~~~~~WE~g~Nr~~~~ 669 (683)
T 3bmv_A 653 NGNTITWEGGSNHTYTV 669 (683)
T ss_dssp SSSCCEECCSSCEEEEC
T ss_pred cCCceEecCCCCeeEEC
Confidence 31 355555444333
No 20
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Probab=95.13 E-value=0.014 Score=61.35 Aligned_cols=61 Identities=20% Similarity=0.189 Sum_probs=48.7
Q ss_pred EEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCEeeeCCCCCee
Q 011344 398 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV 475 (488)
Q Consensus 398 ~VtFtW~g~-AkeV~LAGSFNNW~~~IpM~Kqpss~~~a~~gskksGvWsttL~LPPG~YEYKFIVDGeW~~DPdnPtV 475 (488)
.|+|+..++ |+.|.|.|+ + ..++|.+. ..|+|.+.+.+.+|.+ |+|.|||....||-....
T Consensus 35 ~~~f~vwap~a~~v~l~~~---~-~~~~m~~~------------~~g~w~~~~~~~~g~~-Y~~~v~g~~~~DPya~~~ 96 (602)
T 2bhu_A 35 GTRFRLWTSTARTVAVRVN---G-TEHVMTSL------------GGGIYELELPVGPGAR-YLFVLDGVPTPDPYARFL 96 (602)
T ss_dssp CEEEEEECSSCSSEEEEET---T-EEEECEEE------------ETTEEEEEESCCTTCE-EEEEETTEEECCTTCSCC
T ss_pred eEEEEEECCCCCEEEEEEc---C-CEEeCeeC------------CCcEEEEEEECCCCcE-EEEEECCeEecCCCcccc
Confidence 688987776 999999994 2 46889863 4699999999889986 999999966778865543
No 21
>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A
Probab=94.99 E-value=0.025 Score=60.85 Aligned_cols=55 Identities=20% Similarity=0.318 Sum_probs=43.9
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc-----cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCEe
Q 011344 398 VVEIQYSGD-GEIVEVAGSFNGWH-----HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 466 (488)
Q Consensus 398 ~VtFtW~g~-AkeV~LAGSFNNW~-----~~IpM~Kqpss~~~a~~gskksGvWsttL~-LPPG~YEYKFIVDGeW 466 (488)
.|.|+..++ |+.|.|.+ |+.+. ..++|.+. ..|+|.+.+. +.+|.+ |+|.|+|.|
T Consensus 30 g~~F~vwap~A~~V~l~l-f~~~~~~~~~~~~~m~~~------------~~gvw~~~v~~~~~g~~-Y~y~v~g~~ 91 (718)
T 2vr5_A 30 GVNFSLFSENAEKVELLL-YSLTNQKYPKEIIEVKNK------------TGDIWHVFVPGLRPGQL-YAYRVYGPY 91 (718)
T ss_dssp EEEEEEECSSCSEEEEEE-CCSSCCSSCSEEEEECEE------------SSSEEEEEEETCCTTCE-EEEEEECCE
T ss_pred eEEEEEECCCCCEEEEEE-EcCCCCCCcceEEeCccC------------CCCEEEEEeCCCCCCCE-EEEEEeeec
Confidence 588988776 99999999 87544 24778752 5699999985 789988 999999854
No 22
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Probab=94.94 E-value=0.057 Score=57.29 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=51.6
Q ss_pred CcEEEEEEEec----CCceEEEEeeeC---CCccc--c-ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE-
Q 011344 395 GLEVVEIQYSG----DGEIVEVAGSFN---GWHHR--I-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV- 462 (488)
Q Consensus 395 gLr~VtFtW~g----~AkeV~LAGSFN---NW~~~--I-pM~Kqpss~~~a~~gskksGvWsttL~LPPG-~YEYKFIV- 462 (488)
+.+.|+|+... .|+.|+|+|+-. +|++. + +|.... ......|++++.||.| .+||||++
T Consensus 585 ~~v~v~f~v~~~~~~~g~~~~v~G~~~~LG~W~~~~a~~~l~~~~---------~~~~~~W~~~v~lp~~~~~eyK~~~~ 655 (686)
T 1d3c_A 585 DQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQV---------VYQYPNWYYDVSVPAGKTIEFKFLKK 655 (686)
T ss_dssp SEEEEEEEEECCCCCTTCEEEEEESSGGGTTTCGGGCBCCCBCSS---------SSCTTCEEEEEEEETTCEEEEEEEEE
T ss_pred CeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhcccc---------CCCCCeEEEEEEeCCCCcEEEEEEEE
Confidence 45789999876 389999999874 99865 4 565310 1256799999999988 89999997
Q ss_pred c-C--EeeeCCCCCeec
Q 011344 463 D-G--QWKVDPQRESVT 476 (488)
Q Consensus 463 D-G--eW~~DPdnPtVt 476 (488)
| + .|-..++.-...
T Consensus 656 ~~~~~~WE~g~Nr~~~~ 672 (686)
T 1d3c_A 656 QGSTVTWEGGSNHTFTA 672 (686)
T ss_dssp ETTEEEECCSSCEEEEC
T ss_pred cCCceEecCCCCeEEEC
Confidence 2 2 355554443333
No 23
>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A
Probab=94.16 E-value=0.066 Score=56.10 Aligned_cols=71 Identities=20% Similarity=0.289 Sum_probs=50.8
Q ss_pred CcEEEEEEEec----CCceEEEEeee---CCCccc---cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE-
Q 011344 395 GLEVVEIQYSG----DGEIVEVAGSF---NGWHHR---IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV- 462 (488)
Q Consensus 395 gLr~VtFtW~g----~AkeV~LAGSF---NNW~~~---IpM~Kqpss~~~a~~gskksGvWsttL~LPPG-~YEYKFIV- 462 (488)
..+.|+|+..+ .|+.|+|+|+- .+|+.. ++|... ..++.|++++.||+| ..||||+|
T Consensus 418 ~~v~V~F~v~~~~t~~Ge~v~vvGs~~eLG~W~~~~a~~~l~~~-----------~~p~~W~~~v~lp~~~~~eYKyv~~ 486 (516)
T 1vem_A 418 TPVMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYD-----------SHSNDWRGNVVLPAERNIEFKAFIK 486 (516)
T ss_dssp CEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEEE-----------TTTTEEEEEEEEETTCCEEEEEEEE
T ss_pred CccceEEEEeeccCCCCCEEEEEeChhhhCCCChhhhceecccC-----------CCCCEEEEEEEECCCCcEEEEEEEE
Confidence 35899999865 38999999988 489865 345421 234599999999988 59999998
Q ss_pred c--C---EeeeCCCCCeec
Q 011344 463 D--G---QWKVDPQRESVT 476 (488)
Q Consensus 463 D--G---eW~~DPdnPtVt 476 (488)
| | .|-..++.-...
T Consensus 487 ~~~g~v~~WE~g~NR~~~~ 505 (516)
T 1vem_A 487 SKDGTVKSWQTIQQSWNPV 505 (516)
T ss_dssp CTTSCEEEECSSCEEESSC
T ss_pred eCCCCeeEEeCCCCEEEec
Confidence 3 2 466665544333
No 24
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=94.04 E-value=0.064 Score=55.73 Aligned_cols=60 Identities=13% Similarity=0.047 Sum_probs=42.7
Q ss_pred cEEEEEEEe-cCCceEEE-EeeeCCCcc----ccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEc
Q 011344 396 LEVVEIQYS-GDGEIVEV-AGSFNGWHH----RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD 463 (488)
Q Consensus 396 Lr~VtFtW~-g~AkeV~L-AGSFNNW~~----~IpM~Kqpss~~~a~~gskksGvWsttL~LPPG~YEYKFIVD 463 (488)
...+.|+-. ..++.|.| .|+|++|+. .++|.+... ++..|+|++.+......+.|+|.|.
T Consensus 22 ~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~m~~~~~--------~~~~~~w~~~i~~~~~~~~Y~f~i~ 87 (585)
T 1wzl_A 22 QLRVRLRAKKGDVVRCEVLYADRYASPEEELAHALAGKAGS--------DERFDYFEALLECSTKRVKYVFLLT 87 (585)
T ss_dssp EEEEEEEEETTTCSEEEEEEECTTCCTTSCCEEEECEEEEE--------CSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred EEEEEEEECCCCccEEEEEECCCcCCCCCceEEEEEEEeec--------CCCEEEEEEEEECCCCeEEEEEEEE
Confidence 345555433 35999999 899999964 478886410 1124579999988777789999985
No 25
>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A
Probab=93.80 E-value=0.056 Score=57.35 Aligned_cols=54 Identities=15% Similarity=0.056 Sum_probs=39.8
Q ss_pred EEEEEEecC-CceEEEEeeeCCCccccc--cCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcC
Q 011344 398 VVEIQYSGD-GEIVEVAGSFNGWHHRIK--MDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG 464 (488)
Q Consensus 398 ~VtFtW~g~-AkeV~LAGSFNNW~~~Ip--M~Kqpss~~~a~~gskksGvWsttL~-LPPG~YEYKFIVDG 464 (488)
.|+|+..++ |+.|+|.+-+++|..... |.+ ...|+|.+.+. +.+|.| |+|.|+|
T Consensus 137 g~~F~vwAp~A~~V~l~l~~~~~~~~~~~~~~~------------~~~g~W~~~~~~~~~g~~-Y~y~v~~ 194 (884)
T 4aio_A 137 SVSLHLWAPTAQGVSVCFFDGPAGPALETVQLK------------ESNGVWSVTGPREWENRY-YLYEVDV 194 (884)
T ss_dssp EEEEEEECTTCSEEEEEEESTTTSCEEEEEECE------------EETTEEEEEEEGGGTTCE-EEEEEEE
T ss_pred EEEEEEECCCCCEEEEEEEeCCCCCeeeeeeec------------CCCCEEEEEECCCCCCCE-EEEEEeC
Confidence 589998777 999999996566654422 322 35799999996 678854 8888875
No 26
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*
Probab=93.69 E-value=0.11 Score=55.77 Aligned_cols=65 Identities=17% Similarity=0.192 Sum_probs=48.2
Q ss_pred EEEEEEecC-CceEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEc--CEe--eeCC
Q 011344 398 VVEIQYSGD-GEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD--GQW--KVDP 470 (488)
Q Consensus 398 ~VtFtW~g~-AkeV~LAGSFNNW~~-~IpM~Kqpss~~~a~~gskksGvWsttL~-LPPG~YEYKFIVD--GeW--~~DP 470 (488)
.|+|+..++ |+.|.|.+.|++|.. .++|.+. ..|+|.+.+. +.+|. .|+|.|+ |.| ..||
T Consensus 114 ~~~f~vwap~a~~V~l~~~~~~~~~~~~~m~~~------------~~g~w~~~v~~~~~g~-~Y~f~v~~~g~~~~~~DP 180 (718)
T 2e8y_A 114 HTVFKVWAPAATSAAVKLSHPNKSGRTFQMTRL------------EKGVYAVTVTGDLHGY-EYLFCICNNSEWMETVDQ 180 (718)
T ss_dssp EEEEEEECTTCSEEEEEEECTTSCCEEEECEEC------------GGGEEEEEEESCCTTC-EEEEEEEETTEEEEECCT
T ss_pred cEEEEEECCCCCEEEEEEEcCCCcceEEeCccC------------CCCEEEEEECCCCCCC-eEEEEEEeCCeEEEecCC
Confidence 688988776 999999999998864 3789864 4689999987 56773 4666664 775 5687
Q ss_pred CCCee
Q 011344 471 QRESV 475 (488)
Q Consensus 471 dnPtV 475 (488)
-...+
T Consensus 181 ya~~~ 185 (718)
T 2e8y_A 181 YAKAV 185 (718)
T ss_dssp TCSSB
T ss_pred ccccc
Confidence 65543
No 27
>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*
Probab=93.33 E-value=0.072 Score=60.53 Aligned_cols=66 Identities=18% Similarity=0.099 Sum_probs=49.4
Q ss_pred EEEEEEecC-CceEEEEe-eeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEc------CE--
Q 011344 398 VVEIQYSGD-GEIVEVAG-SFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD------GQ-- 465 (488)
Q Consensus 398 ~VtFtW~g~-AkeV~LAG-SFNNW~~-~IpM~Kqpss~~~a~~gskksGvWsttL~-LPPG~YEYKFIVD------Ge-- 465 (488)
.|.|+..++ |+.|.|.+ +|++|.. .++|.+. ...|+|.+.+. +.+|.| |+|.|+ |.
T Consensus 305 gv~F~vwAP~A~~V~L~l~d~~~~~~~~~~m~~~-----------~~~GvW~~~v~~~~~G~~-Y~y~v~~~~p~~g~~~ 372 (1083)
T 2fhf_A 305 GVTFRVWAPTAQQVELVIYSADKKVIASHPMTRD-----------SASGAWSWQGGSDLKGAF-YRYAMTVYHPQSRKVE 372 (1083)
T ss_dssp EEEEEEECTTCSEEEEEEECTTCCEEEEEECEEC-----------TTTCEEEEEECGGGTTCE-EEEEEEEEETTTTEEE
T ss_pred eEEEEEECCCCCEEEEEEEcCCCCccceEECeEC-----------CCCCEEEEEECCCCCCCE-EEEEEEeecCCCCccc
Confidence 688998877 99999999 8899964 3788753 25699999985 788965 788875 43
Q ss_pred --eeeCCCCCee
Q 011344 466 --WKVDPQRESV 475 (488)
Q Consensus 466 --W~~DPdnPtV 475 (488)
...||-....
T Consensus 373 ~~~~~DPYa~~~ 384 (1083)
T 2fhf_A 373 QYEVTDPYAHSL 384 (1083)
T ss_dssp EEEECCTTCSCB
T ss_pred cceecCCcccee
Confidence 3667755443
No 28
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=92.75 E-value=0.085 Score=54.85 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=43.5
Q ss_pred CcEEEEEEEec-CCceEEE-EeeeCCCcc------ccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEc
Q 011344 395 GLEVVEIQYSG-DGEIVEV-AGSFNGWHH------RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD 463 (488)
Q Consensus 395 gLr~VtFtW~g-~AkeV~L-AGSFNNW~~------~IpM~Kqpss~~~a~~gskksGvWsttL~LPPG~YEYKFIVD 463 (488)
....+.|+... .++.|.| .|+|++|+. .++|.+..+ ++..|.|++.+......+.|+|.|.
T Consensus 21 ~~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~~~m~~~~~--------~~~~~~w~~~v~~~~~~~~Y~f~i~ 89 (588)
T 1j0h_A 21 ETLHLRLRTKKDDIDRVELLHGDPYDWQNGAWQFQMMPMRKTGS--------DELFDYWFAEVKPPYRRLRYGFVLY 89 (588)
T ss_dssp SCEEEEEEEETTTCSEEEEEEECTTCEETTEECCEEEECEEEEE--------CSSEEEEEEEECCTTSCEEEEEEEE
T ss_pred CEEEEEEEECCCCccEEEEEECCCCCccccccceEEEEeEEeec--------CCCeEEEEEEEECCCcEEEEEEEEE
Confidence 34566666444 5999999 799999964 478986410 1124679999987777788898885
No 29
>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*
Probab=91.27 E-value=0.1 Score=57.98 Aligned_cols=64 Identities=17% Similarity=0.190 Sum_probs=48.2
Q ss_pred EEEEEecC-CceEEEEe-eeCCCcc---ccccCCCCCCCccccccccCCCcEEEEEEeCCee-----EEEEEEEc--CE-
Q 011344 399 VEIQYSGD-GEIVEVAG-SFNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGT-----YEIKFIVD--GQ- 465 (488)
Q Consensus 399 VtFtW~g~-AkeV~LAG-SFNNW~~---~IpM~Kqpss~~~a~~gskksGvWsttL~LPPG~-----YEYKFIVD--Ge- 465 (488)
|.|+..++ |+.|+|.+ ++++|.. .++|.+. ..|+|.+.+.+.||. +.|+|.|+ |.
T Consensus 146 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~G~~~~~g~~Y~yrv~~~~~~ 213 (877)
T 3faw_A 146 VEASLWSPSADSVTMIIYDKDNQNRVVATTPLVKN------------NKGVWQTILDTKLGIKNYTGYYYLYEIKRGKDK 213 (877)
T ss_dssp EEEEEECTTCSEEEEEEEETTEEEEEEEEEECEEC------------TTSEEEEEECGGGTCSCCTTCEEEEEEEETTEE
T ss_pred EEEEEECCCCCEEEEEEEeCCCCccceeeeccccC------------CCCEEEEEECCCCCCccCCCeEEEEEEeeCCce
Confidence 88998887 99999998 6778853 5788763 579999999776762 67888886 33
Q ss_pred -eeeCCCCCe
Q 011344 466 -WKVDPQRES 474 (488)
Q Consensus 466 -W~~DPdnPt 474 (488)
...||-.-.
T Consensus 214 ~~~~DPYA~~ 223 (877)
T 3faw_A 214 VKILDPYAKS 223 (877)
T ss_dssp EEECCTTCSC
T ss_pred eEecCcccee
Confidence 456886543
No 30
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}
Probab=91.13 E-value=0.24 Score=55.01 Aligned_cols=62 Identities=16% Similarity=0.240 Sum_probs=46.0
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc----cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEE--cCE--ee
Q 011344 398 VVEIQYSGD-GEIVEVAGSFNGWH----HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV--DGQ--WK 467 (488)
Q Consensus 398 ~VtFtW~g~-AkeV~LAGSFNNW~----~~IpM~Kqpss~~~a~~gskksGvWsttL~-LPPG~YEYKFIV--DGe--W~ 467 (488)
.|.|+..++ |+.|.|.+ |++|. ..++|.+. ..|+|.+.+. +.+|.+ |+|.| +|. ..
T Consensus 326 gv~F~vwaP~A~~V~l~l-f~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~g~~-Y~y~v~~~g~~~~~ 391 (921)
T 2wan_A 326 ATSFRVWAPTASNVQLLL-YNSEKGSITKQLEMQKS------------DNGTWKLQVSGNLENWY-YLYQVTVNGTTQTA 391 (921)
T ss_dssp EEEEEEECTTCSEEEEEE-ESSSSSCCSEEEECEEC------------GGGEEEEEEESCCTTCE-EEEEEECSSCEEEE
T ss_pred eEEEEEECCCCCEEEEEE-EeCCCCCcCeEEeCeeC------------CCCEEEEEEccCCCCCE-EEEEEEeCCeEEEe
Confidence 688988887 99999997 99994 34788763 4589999986 567753 66666 565 45
Q ss_pred eCCCCC
Q 011344 468 VDPQRE 473 (488)
Q Consensus 468 ~DPdnP 473 (488)
.||-..
T Consensus 392 ~DPya~ 397 (921)
T 2wan_A 392 VDPYAR 397 (921)
T ss_dssp CCTTCS
T ss_pred cCCcce
Confidence 677544
No 31
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=91.07 E-value=0.041 Score=56.46 Aligned_cols=69 Identities=20% Similarity=0.417 Sum_probs=0.0
Q ss_pred cEEEEEEE-ec---CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE-c-
Q 011344 396 LEVVEIQY-SG---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV-D- 463 (488)
Q Consensus 396 Lr~VtFtW-~g---~AkeV~LAGSFN---NW~~~--IpM~Kqpss~~~a~~gskksGvWsttL~LPPG-~YEYKFIV-D- 463 (488)
.+.|+|+. .. .|+.|+|+|+-. +|++. ++|... .....|++++.||+| .+||||+| |
T Consensus 430 ~v~v~F~v~~~~t~~G~~v~v~G~~~~LG~W~~~~a~~l~~~-----------~~~~~W~~~v~lp~~~~~eyKy~~~~~ 498 (527)
T 1gcy_A 430 LVSVSFRCDNGATQMGDSVYAVGNVSQLGNWSPAAALRLTDT-----------SGYPTWKGSIALPAGQNEEWKCLIRNE 498 (527)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEEEecccCCCCCeEEEEcChhHhCCCCcccCccCccC-----------CCCCeEEEEEEeCCCCcEEEEEEEEeC
Confidence 46788886 33 389999999884 89863 677521 246789999999999 69999996 3
Q ss_pred -C-----EeeeCCCCCee
Q 011344 464 -G-----QWKVDPQRESV 475 (488)
Q Consensus 464 -G-----eW~~DPdnPtV 475 (488)
| .|-..|+.-..
T Consensus 499 ~~~~~~~~We~g~nr~~~ 516 (527)
T 1gcy_A 499 ANATQVRQWQGGANNSLT 516 (527)
T ss_dssp ------------------
T ss_pred CCCcceeEecCCCCeeEE
Confidence 2 36655554443
No 32
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
Probab=90.75 E-value=0.24 Score=53.09 Aligned_cols=64 Identities=17% Similarity=0.274 Sum_probs=46.7
Q ss_pred EEEEEEecC-CceEEEEe-eeCCCcc---ccccCCCCCCCccccccccCCCcEEEEEEe--CCee-----EEEEEEEc--
Q 011344 398 VVEIQYSGD-GEIVEVAG-SFNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLWL--YPGT-----YEIKFIVD-- 463 (488)
Q Consensus 398 ~VtFtW~g~-AkeV~LAG-SFNNW~~---~IpM~Kqpss~~~a~~gskksGvWsttL~L--PPG~-----YEYKFIVD-- 463 (488)
.|.|+..++ |+.|.|.+ +|++|.. .++|.+. ..|+|.+.+.- .+|. +.|+|.|+
T Consensus 25 gv~F~vwap~A~~V~l~l~~~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~~g~~~~~g~~Y~y~v~~~ 92 (714)
T 2ya0_A 25 QVDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKG------------ERGTWKQTLDSTNKLGITDFTGYYYQYQIERQ 92 (714)
T ss_dssp EEEEEEECTTCSEEEEEEECSSCTTSEEEEEECEEC------------GGGEEEEEECTTCSSSCSCCTTCEEEEEEEET
T ss_pred EEEEEEECCCCCEEEEEEEeCCCCCccceEEeCccC------------CCCEEEEEECCccCCCccccCCcEEEEEEEeC
Confidence 488988776 99999999 8888864 5788763 46999998863 1341 67888886
Q ss_pred CEe--eeCCCCC
Q 011344 464 GQW--KVDPQRE 473 (488)
Q Consensus 464 GeW--~~DPdnP 473 (488)
|.+ ..||-..
T Consensus 93 ~~~~~~~DPya~ 104 (714)
T 2ya0_A 93 GKTVLALDPYAK 104 (714)
T ss_dssp TEEEEECCTTCS
T ss_pred CceEEecCCcee
Confidence 644 5788653
No 33
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}
Probab=90.55 E-value=0.37 Score=51.17 Aligned_cols=61 Identities=20% Similarity=0.236 Sum_probs=46.8
Q ss_pred EEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEE-EeCCeeEEEEEEEc-CEeeeCCCCCe
Q 011344 398 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVD-GQWKVDPQRES 474 (488)
Q Consensus 398 ~VtFtW~g~-AkeV~LAGSFNNW~~~IpM~Kqpss~~~a~~gskksGvWsttL-~LPPG~YEYKFIVD-GeW~~DPdnPt 474 (488)
.|.|+..++ |+.|.|.+ +|. .++|.+. ..|.|.+.+ .+.+|. .|+|.|+ |....||-...
T Consensus 43 ~~~F~vwap~a~~v~l~~---~~~-~~~m~~~------------~~g~~~~~~~~~~~g~-~Y~y~v~~~~~~~DP~a~~ 105 (618)
T 3m07_A 43 VVRFRLWATGQQKVMLRL---AGK-DQEMQAN------------GDGWFTLDVAGVTPGT-EYNFVLSDGMVVPDPASRA 105 (618)
T ss_dssp EEEEEEECTTCSCEEEEE---TTE-EEECEEC------------STTEEEEEEETCCTTC-EEEEEETTSCEECCTTCSC
T ss_pred cEEEEEECCCCCEEEEEE---CCC-cccCeec------------CCEEEEEEeCCCCCCC-EEEEEEeCCeEecccccee
Confidence 588998887 99999998 354 4789864 568999988 488886 5889995 56788886554
Q ss_pred e
Q 011344 475 V 475 (488)
Q Consensus 475 V 475 (488)
.
T Consensus 106 ~ 106 (618)
T 3m07_A 106 Q 106 (618)
T ss_dssp B
T ss_pred e
Confidence 3
No 34
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}
Probab=88.32 E-value=0.49 Score=52.57 Aligned_cols=52 Identities=23% Similarity=0.425 Sum_probs=38.2
Q ss_pred ecCCceEEEEeee-------CCCccccc---cCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCEee
Q 011344 404 SGDGEIVEVAGSF-------NGWHHRIK---MDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK 467 (488)
Q Consensus 404 ~g~AkeV~LAGSF-------NNW~~~Ip---M~Kqpss~~~a~~gskksGvWsttL~LPPG~YEYKFIVDGeW~ 467 (488)
...+..+.+.|+| .+|.+.-. |.+ ..+|+|+.+..||+|.||||+.++|.|.
T Consensus 160 ~~~~~~~~~~g~~~~~~g~~~~w~p~~~~~~~~~------------~~~~~y~~~~~l~~g~y~~kv~~~~~w~ 221 (921)
T 2wan_A 160 SANPVTAVLVGDLQQALGAANNWSPDDDHTLLKK------------INPNLYQLSGTLPAGTYQYKIALDHSWN 221 (921)
T ss_dssp ECCCCCEEEEETTSGGGTCSSSSCTTCGGGBCEE------------EETTEEEEEEEECSEEEEEEEEETTSSS
T ss_pred cccccccccccchhhhccccccCCCCCCcceeec------------cCCcceeeeeccCCcceeEEEeecCccc
Confidence 3346678888876 46765421 221 1368999999999999999999998884
No 35
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=86.51 E-value=0.16 Score=52.84 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=41.7
Q ss_pred cEEEEEEEec-CCceEEE-EeeeCCCcc---ccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEc
Q 011344 396 LEVVEIQYSG-DGEIVEV-AGSFNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD 463 (488)
Q Consensus 396 Lr~VtFtW~g-~AkeV~L-AGSFNNW~~---~IpM~Kqpss~~~a~~gskksGvWsttL~LPPG~YEYKFIVD 463 (488)
...+.|+... .++.|.| .|+|++|.. .++|.+... ++..|+|++.+......+.|||.|.
T Consensus 22 ~~~~~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~M~~~~~--------~~~~~~w~~~i~~~~~~~~Y~f~i~ 86 (583)
T 1ea9_C 22 TVHLRIRTKKDDMTAVYALAGDKYMWDHTMEYVPMTKLAT--------DELFDYWECEVTPPYRRVKYGFLLQ 86 (583)
T ss_dssp CEECCCEECTTCCSBEEEEEECSSSCTTTCEEEEECEEEE--------CSSCEEECCEECCTTSCEEECBCCE
T ss_pred EEEEEEEECCCCccEEEEEECCCcCCCCcEEEEEEEEEec--------cCCeEEEEEEEECCCceEEEEEEEE
Confidence 3455565444 5999999 799999975 478986410 1124679999987766778888773
No 36
>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A
Probab=86.25 E-value=0.39 Score=50.44 Aligned_cols=59 Identities=10% Similarity=0.107 Sum_probs=40.8
Q ss_pred EEEEEEe----cC-CceEEEEeeeCCCccccccCC--CCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcC
Q 011344 398 VVEIQYS----GD-GEIVEVAGSFNGWHHRIKMDP--LPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDG 464 (488)
Q Consensus 398 ~VtFtW~----g~-AkeV~LAGSFNNW~~~IpM~K--qpss~~~a~~gskksGvWsttL~LPPG~YEYKFIVDG 464 (488)
.|+|+.. ++ ++.|+|.+.|++=...++|.+ ... +...|+|++.+......+.|+|.|+|
T Consensus 31 ~v~f~v~~~~~ap~a~~V~l~~~~~~~~~~~~m~~~~~~~--------~~~~~~w~~~i~~~~~g~~Y~f~i~~ 96 (637)
T 1ji1_A 31 SVTLKLRTFKGDITSANIKYWDTADNAFHWVPMVWDSNDP--------TGTFDYWKGTIPASPSIKYYRFQIND 96 (637)
T ss_dssp CEEEEEEEETTCCSEEEEEEEETTTTEEEEEECEEEEECT--------TSSEEEEEEEECCCSSCEEEEEEEEE
T ss_pred EEEEEEEEecCcCCeeEEEEEEecCCCEEEEEeEEeeccc--------cCCeeEEEEEEECCCceEEEEEEEEE
Confidence 5777765 54 899999999875222478876 210 12348999999765556679999974
No 37
>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}
Probab=85.27 E-value=0.72 Score=51.93 Aligned_cols=63 Identities=17% Similarity=0.285 Sum_probs=45.4
Q ss_pred EEEEEEecC-CceEEEEe-eeCCCcc---ccccCCCCCCCccccccccCCCcEEEEEEeC--Ce-----eEEEEEEEc--
Q 011344 398 VVEIQYSGD-GEIVEVAG-SFNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLY--PG-----TYEIKFIVD-- 463 (488)
Q Consensus 398 ~VtFtW~g~-AkeV~LAG-SFNNW~~---~IpM~Kqpss~~~a~~gskksGvWsttL~LP--PG-----~YEYKFIVD-- 463 (488)
.|.|+..++ |+.|.|.+ +|++|.. .++|.+. ..|+|.+.+... +| -+.|+|.|+
T Consensus 332 gv~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~~g~~~~~G~~Y~y~i~~~ 399 (1014)
T 2ya1_A 332 QVDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKG------------ERGTWKQTLDSTNKLGITDFTGYYYQYQIERQ 399 (1014)
T ss_dssp EEEEEEECTTCSEEEEEEECSSCTTSEEEEEECEEC------------GGGEEEEEECTTCSSCCSCCTTCEEEEEEEET
T ss_pred EEEEEEECCCCCEEEEEEEECCCCCccceEEecccC------------CCCEEEEEEcccccCCccccCCcEEEEEEEeC
Confidence 388998887 99999999 8888864 4788753 568999988631 23 256777775
Q ss_pred CE--eeeCCCC
Q 011344 464 GQ--WKVDPQR 472 (488)
Q Consensus 464 Ge--W~~DPdn 472 (488)
|. ...||-.
T Consensus 400 ~~~~~~~DPYa 410 (1014)
T 2ya1_A 400 GKTVLALDPYA 410 (1014)
T ss_dssp TEEEEECCTTC
T ss_pred CeEEEecCccc
Confidence 54 4578854
No 38
>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A*
Probab=78.01 E-value=3.9 Score=34.94 Aligned_cols=65 Identities=17% Similarity=0.286 Sum_probs=46.6
Q ss_pred EEEEEEEecCCceEEEEeeeC--CCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEEcC--EeeeC
Q 011344 397 EVVEIQYSGDGEIVEVAGSFN--GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVDG--QWKVD 469 (488)
Q Consensus 397 r~VtFtW~g~AkeV~LAGSFN--NW~~~--IpM~Kqpss~~~a~~gskksGvWsttL~LPPG-~YEYKFIVDG--eW~~D 469 (488)
..|++.|..++..|+|==-+. +|... ++|.+. .-.|.|..+|.|+.+ ..+|+| -|| .|-.+
T Consensus 10 ~~vTvyY~sg~~~~ylHy~~~~g~Wt~vpgv~M~~~-----------~~~Gw~~~TI~~~~~~~l~~~F-~dG~~~WDNN 77 (102)
T 2c3v_A 10 TDITIYYKTGWTHPHIHYSLNQGAWTTLPGVPLTKS-----------EXEGXVKVTIEAEEGSQLRAAF-NNGSGQWDNN 77 (102)
T ss_dssp CSEEEEEECCCSSCEEEEEETTCCBCCTTCEECEEC-----------SSTTEEEEEECCCTTCEEEEEE-ECSSSCEECG
T ss_pred CEEEEEEcCCCCcEEEEEeCCCCCcccCCCcCcccc-----------ccCCceEEEEecCCCceEEEEE-eCCCcccccC
Confidence 467788877788888876674 48754 678752 136888999999964 899999 565 58765
Q ss_pred CCCC
Q 011344 470 PQRE 473 (488)
Q Consensus 470 PdnP 473 (488)
....
T Consensus 78 ~g~N 81 (102)
T 2c3v_A 78 QGRD 81 (102)
T ss_dssp GGTC
T ss_pred CCcc
Confidence 4443
No 39
>4fch_A Outer membrane protein SUSE; starch binding, extracellular, carbohydrate-B protein; HET: GLC; 1.30A {Bacteroides thetaiotaomicron}
Probab=77.35 E-value=1.5 Score=40.45 Aligned_cols=50 Identities=12% Similarity=0.082 Sum_probs=38.6
Q ss_pred CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCEee
Q 011344 407 GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK 467 (488)
Q Consensus 407 AkeV~LAGSFNNW~--~~IpM~Kqpss~~~a~~gskksGvWsttL~LPPG~YEYKFIVDGeW~ 467 (488)
.+++||+|++++|. ...+|.+.. ...|.|..++.|+.|. +|||.-+..|-
T Consensus 12 p~~lY~vG~~~gW~~~~~~~m~~~~----------~~~g~y~~~~yl~ag~-~fKf~~~~~~~ 63 (221)
T 4fch_A 12 PKTMFIVGSMLDTDWKVWKPMAGVY----------GMDGQFYSMIYFDANS-EFKFGTKENEY 63 (221)
T ss_dssp CSCCEEEETTTCTTSCCEEECEECT----------TCTTEEEEEEEECTTE-EEEEESSTTCC
T ss_pred cceEEEEecCCCCCCCccceeeecc----------CCCceEEEEEEEcCCC-eEEEeeccCcc
Confidence 78899999999885 336776542 3579999999998774 89999876553
No 40
>4fe9_A Outer membrane protein SUSF; starch binding, IG fold, extracellular surface, outermembran carbohydrate-binding protein; HET: GLC BGC MTT; 2.00A {Bacteroides thetaiotaomicron}
Probab=54.75 E-value=10 Score=38.10 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=34.3
Q ss_pred CceEEEEeeeCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEc
Q 011344 407 GEIVEVAGSFNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD 463 (488)
Q Consensus 407 AkeV~LAGSFNNW~~~--IpM~Kqpss~~~a~~gskksGvWsttL~LPPG~YEYKFIVD 463 (488)
....||.|++++|... .+|.+.. ...+.|.....+..+. +|||+.-
T Consensus 150 ~~~~YlvG~~~gW~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~-~fK~~~~ 197 (470)
T 4fe9_A 150 PDGYYIVGDFTGWDGNSAQQMKKDA----------LDENLYILEAEIESTS-NFKIFPA 197 (470)
T ss_dssp TTCEEEEETTTCSSGGGCEECEECS----------SCTTEEEEEEEESSCC-EEEEEEG
T ss_pred cceeEEEcccCCCCcccCeeeeeec----------CCCceEEEEEEeccCc-eEEEeec
Confidence 4678999999999854 3454331 3678999998887766 7999964
No 41
>2eef_A Protein phosphatase 1, regulatory (inhibitor) subunit 3B; CBM_21 domain, carbohydrate binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.80 E-value=23 Score=32.18 Aligned_cols=69 Identities=12% Similarity=0.246 Sum_probs=44.6
Q ss_pred EEEEEEEec--CCceEEEEeeeCCCcccc--ccCCCCCCCccccccccCCCcEEEEEEeCC-----e--eEEEEEEEcCE
Q 011344 397 EVVEIQYSG--DGEIVEVAGSFNGWHHRI--KMDPLPSSSIIEPIRSRKSRLWSTVLWLYP-----G--TYEIKFIVDGQ 465 (488)
Q Consensus 397 r~VtFtW~g--~AkeV~LAGSFNNW~~~I--pM~Kqpss~~~a~~gskksGvWsttL~LPP-----G--~YEYKFIVDGe 465 (488)
..-++.... -.+.|.|.=+|++|.... ++...++. .+......|..++.||+ + .+-.+|.|+|.
T Consensus 48 l~GtV~V~NlafeK~V~VR~T~D~Wkt~~dv~a~y~~~~-----~~~~~~D~F~F~I~lp~~~~~~~~leFcIrY~v~g~ 122 (156)
T 2eef_A 48 IAGTVKVQNLAFEKTVKIRMTFDTWKSYTDFPCQYVKDT-----YAGSDRDTFSFDISLPEKIQSYERMEFAVYYECNGQ 122 (156)
T ss_dssp EEEEEEECCSSSCCEEEEEEESSTTSSEEEEECEECCCS-----SSCSSSCEEEECCCCCSCCCTTSCCEEEEEEEETTE
T ss_pred EEEEEEEeccCCCcEEEEEEeECCCcccEEEEEEEcccc-----CCCCCceEEEEEEECCCccCCCcEEEEEEEEEeCCC
Confidence 344444444 289999999999998763 34332110 11123568999998886 2 57788999986
Q ss_pred --eeeCC
Q 011344 466 --WKVDP 470 (488)
Q Consensus 466 --W~~DP 470 (488)
|-.+.
T Consensus 123 eyWDNN~ 129 (156)
T 2eef_A 123 TYWDSNR 129 (156)
T ss_dssp EEEESGG
T ss_pred EEecCCC
Confidence 65543
No 42
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=41.50 E-value=60 Score=27.86 Aligned_cols=64 Identities=17% Similarity=0.292 Sum_probs=53.9
Q ss_pred chhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhcccchHHHHHHHhh
Q 011344 329 NQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEES 392 (488)
Q Consensus 329 ~~~ei~~l~~mlhQkelE~~~lk~q~e~tK~aLa~l~~k~~~ei~~AqkLlseK~~~LdaAeea 392 (488)
...||..++..+..-+.|+.-++.+...-..+|+-++...+.++..++..|.....+|..++..
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e 97 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQD 97 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4578999999999889999988888888888888889888999999999998887777766543
No 43
>4fe9_A Outer membrane protein SUSF; starch binding, IG fold, extracellular surface, outermembran carbohydrate-binding protein; HET: GLC BGC MTT; 2.00A {Bacteroides thetaiotaomicron}
Probab=40.12 E-value=21 Score=35.91 Aligned_cols=53 Identities=15% Similarity=0.322 Sum_probs=36.8
Q ss_pred CceEEEEeeeCCCccc-------cccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCEeeeCC
Q 011344 407 GEIVEVAGSFNGWHHR-------IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDP 470 (488)
Q Consensus 407 AkeV~LAGSFNNW~~~-------IpM~Kqpss~~~a~~gskksGvWsttL~LPPG~YEYKFIVDGeW~~DP 470 (488)
...++|+|++++|.-. .+|.+. ....+.|..++.+..| .+|||.-++.|-.+-
T Consensus 260 ~~~lyivG~~~~wg~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~a~-gefKF~~~~~W~~~~ 319 (470)
T 4fe9_A 260 PTELYMTGSAYNWGTPAGDPNAWKALVPV----------NGTKGTFWGIFYFAAN-DQVKFAPQANWGNDF 319 (470)
T ss_dssp CSCCEEEEGGGGGGCSTTCTTTCEECEEC----------TTCTTEEEEEEEECTT-CEEEEESSSSSSSCB
T ss_pred cceEEEEeecccCCCCCCCcccccccccc----------cCcCceEEEEEEECCC-ceEEEEecCCccccc
Confidence 5679999999887532 122221 1357888888887654 589999998886654
No 44
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=37.75 E-value=55 Score=28.25 Aligned_cols=64 Identities=16% Similarity=0.210 Sum_probs=48.3
Q ss_pred chhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhcccchHHHHHHHhh
Q 011344 329 NQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEES 392 (488)
Q Consensus 329 ~~~ei~~l~~mlhQkelE~~~lk~q~e~tK~aLa~l~~k~~~ei~~AqkLlseK~~~LdaAeea 392 (488)
...||..++..+..-+.|+..++.+...-..+|+-++...+.++..++..|.....+|..++..
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e 99 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCE 99 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888888888888888777778888888888888999999888887777766543
No 45
>4dny_A Metalloprotease STCE; metzincin, bacterial zinc metalloprotease, O-linked glycoPro hydrolase; 1.61A {Escherichia coli}
Probab=33.54 E-value=42 Score=29.93 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=19.8
Q ss_pred EEEeCCe-eEEEEEEEcCEeeeCCCC
Q 011344 448 VLWLYPG-TYEIKFIVDGQWKVDPQR 472 (488)
Q Consensus 448 tL~LPPG-~YEYKFIVDGeW~~DPdn 472 (488)
++.|..| .|.|+| ++|+|+.+-+.
T Consensus 99 svtl~rG~t~~F~y-~~g~Wv~~gd~ 123 (126)
T 4dny_A 99 KVTLSVGNTLLFKY-VNGQWFRSGEL 123 (126)
T ss_dssp EEEECTTCEEEEEE-ETTEEEETTCC
T ss_pred EEEecCCCEEEEEE-cCCEEEEcccc
Confidence 4578888 899999 99999987653
No 46
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=32.27 E-value=38 Score=27.83 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=28.2
Q ss_pred chHHHHHHHHHHHhcCCCCCC-CCChHHHHHhch
Q 011344 61 NEELYNDLREFLSTVGLSESH-VPSMKELSAHGR 93 (488)
Q Consensus 61 ~~el~~d~~ef~s~~~lp~~h-vps~kel~~hgr 93 (488)
-..+++.|++.+..-.||+|. +||.+||.++=.
T Consensus 11 ~~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~ 44 (113)
T 3tqn_A 11 YQQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQ 44 (113)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHC
Confidence 367899999999999999885 899999998643
No 47
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=31.44 E-value=38 Score=28.45 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=27.2
Q ss_pred chHHHHHHHHHHHhcCCCCCC-CCChHHHHHh
Q 011344 61 NEELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (488)
Q Consensus 61 ~~el~~d~~ef~s~~~lp~~h-vps~kel~~h 91 (488)
-+.+++.|++.+-+-.|++|. +||.+||.++
T Consensus 16 Y~QI~~~i~~~I~~G~l~pG~~LPser~La~~ 47 (134)
T 4ham_A 16 YEQIVQKIKEQVVKGVLQEGEKILSIREFASR 47 (134)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCccHHHHHHH
Confidence 367899999999999999996 8999999875
No 48
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=30.07 E-value=91 Score=26.09 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=30.1
Q ss_pred hhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011344 331 LEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTK 367 (488)
Q Consensus 331 ~ei~~l~~mlhQkelE~~~lk~q~e~tK~aLa~l~~k 367 (488)
-||++|++=+.--|-|-.|-.+.+.-||+.|+.|+..
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~q 62 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQ 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 5899999888777777777788889999888887663
No 49
>4fem_A Outer membrane protein SUSE; starch binding, extracellular, carbohydrate-B protein; HET: ACX; 2.50A {Bacteroides thetaiotaomicron}
Probab=25.89 E-value=40 Score=32.80 Aligned_cols=50 Identities=12% Similarity=0.060 Sum_probs=36.6
Q ss_pred CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCEee
Q 011344 407 GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK 467 (488)
Q Consensus 407 AkeV~LAGSFNNW~--~~IpM~Kqpss~~~a~~gskksGvWsttL~LPPG~YEYKFIVDGeW~ 467 (488)
...+||.|+..+|. ...+|.+.. ...|.|.....|+.| .+|||.-...|-
T Consensus 149 p~~lYlvG~~~~~~w~~~~~l~~~~----------~~~g~y~~~~yl~~~-~~fKf~~~~~~~ 200 (358)
T 4fem_A 149 PKTMFIVGSMLDTDWKVWKPMAGVY----------GMDGQFYSMIYFDAN-SEFKFGTKENEY 200 (358)
T ss_dssp CSCCEEEETTTCTTSCCEEECEECT----------TSTTEEEEEEEECTT-EEEEEESSTTCC
T ss_pred cceEEEeccccCCCCcccceeeecc----------CCCceEEEEEEecCC-ceEEeccccCCc
Confidence 57899999997654 334565432 357899999999876 679998876554
No 50
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.37 E-value=39 Score=28.77 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=30.1
Q ss_pred cCCCCCCCCChHHHHHhchhhHHHHHHHhhHHHH
Q 011344 75 VGLSESHVPSMKELSAHGRDDLANIVRRRGYKFI 108 (488)
Q Consensus 75 ~~lp~~hvps~kel~~hgr~dlan~vrrrgyk~i 108 (488)
.|..=..||+|+|-..=..+++|..+|+.||+=+
T Consensus 6 ~~m~~~~~ps~seV~~Wsp~~VadWLkk~g~~~c 39 (90)
T 2eap_A 6 SGMALRNVPFRSEVLGWDPDSLADYFKKLNYKDC 39 (90)
T ss_dssp CCSSTTCCCCHHHHTTCCTTTHHHHHHHTTCHHH
T ss_pred ccccccccccCccccccCHHHHHHHHHHcCCchH
Confidence 3566678999999999999999999999999664
No 51
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=25.31 E-value=1.9e+02 Score=29.54 Aligned_cols=62 Identities=16% Similarity=-0.023 Sum_probs=45.7
Q ss_pred chhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhcccchHHHHHHHhhCCCcEEEEEEEec
Q 011344 329 NQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSG 405 (488)
Q Consensus 329 ~~~ei~~l~~mlhQkelE~~~lk~q~e~tK~aLa~l~~k~~~ei~~AqkLlseK~~~LdaAeeaLsgLr~VtFtW~g 405 (488)
=+.|+.+|+.+.++.+-++.+++++++..++.|.- ....+.+|...-..+.+-+.|..+++.
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~---------------~~~~rr~l~n~~~~l~gnIrV~vRvRP 69 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ---------------SNMERKELHNTVMDLRDNIRVFCRIRP 69 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 35688888888888888888888777777766521 113344777777888999999999965
No 52
>1mhx_A Immunoglobulin-binding protein G; alpha-beta protein, redesigned first beta-hairpin, immune SY; 1.80A {Finegoldia magna} SCOP: d.15.7.1 PDB: 1mi0_A
Probab=24.62 E-value=24 Score=28.11 Aligned_cols=14 Identities=36% Similarity=0.847 Sum_probs=11.3
Q ss_pred EcCEeeeCCCCCee
Q 011344 462 VDGQWKVDPQRESV 475 (488)
Q Consensus 462 VDGeW~~DPdnPtV 475 (488)
|||+|.+|+.-.+.
T Consensus 48 vdgeWsYD~ATkTF 61 (65)
T 1mhx_A 48 VDGEWTYDDAAKTF 61 (65)
T ss_dssp CCSEEEEETTTTEE
T ss_pred CccEEEecCceeEE
Confidence 68999999976654
No 53
>4fch_A Outer membrane protein SUSE; starch binding, extracellular, carbohydrate-B protein; HET: GLC; 1.30A {Bacteroides thetaiotaomicron}
Probab=23.81 E-value=44 Score=30.60 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=34.0
Q ss_pred ceEEEEeee--CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCEe
Q 011344 408 EIVEVAGSF--NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQW 466 (488)
Q Consensus 408 keV~LAGSF--NNW~~~--IpM~Kqpss~~~a~~gskksGvWsttL~LPPG~YEYKFIVDGeW 466 (488)
..|+|.|+- ++|... .+|... ....+.|.....|..|..+++|.++..|
T Consensus 117 ~~v~liG~at~~gW~~~~~~~~t~~----------~t~~g~~~~~~~l~~Ge~k~~~~~~~DW 169 (221)
T 4fch_A 117 AEVYLFGNTTGGSWAFNDEWKFTVP----------ATKDGNFVSPAMTASGEVRMCFKTDLDW 169 (221)
T ss_dssp CCEEEEBGGGTSBCSCBGGGBCBCC----------SSTTCCEECCCCCSCEECEEEECCSSCG
T ss_pred ceEEEEEeecCCCCCCCcccceeec----------cCCCceEEeEEEecCCcEEEEEcCCCCc
Confidence 469999984 688754 345431 1367889888899999877776555444
No 54
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense}
Probab=23.77 E-value=1.2e+02 Score=26.01 Aligned_cols=57 Identities=19% Similarity=0.388 Sum_probs=39.4
Q ss_pred EEEEEEEecC---CceEEEEe-eeCCCccccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEE-cCEeeeC
Q 011344 397 EVVEIQYSGD---GEIVEVAG-SFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV-DGQWKVD 469 (488)
Q Consensus 397 r~VtFtW~g~---AkeV~LAG-SFNNW~~~IpM~Kqpss~~~a~~gskksGvWsttL~-LPPG~YEYKFIV-DGeW~~D 469 (488)
--|.|.+.++ =..|+|.| +=.+| ++|.+ . ...|++.-. .+.|.+.||+.. ||+|...
T Consensus 28 l~VlV~nv~G~GdI~~V~Ik~~~~~~W---~~M~r------------n-Ga~W~~~s~~~L~GplSfRvtts~G~~~va 90 (108)
T 2jnz_A 28 LVLDIKYTRPGDSLAEVELRQHGSEEW---EPLTK------------K-GNVWEVKSSKPLVGPFNFRFMSKGGMRNVF 90 (108)
T ss_dssp EEEEEEEEBTTBCEEEEEEECTTCCCC---EECEE------------E-TTEEEEECSSCCCSSEEEEEEETTTEEEEE
T ss_pred EEEEEEEeCCCCCEEEEEEEeCCCCcE---eEccc------------c-CCEeEeCCCCCCCCCEEEEEEEcCCcEEEE
Confidence 3567777665 25689996 66788 48875 3 468987651 345788888887 5887654
No 55
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}
Probab=23.76 E-value=44 Score=27.36 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=29.0
Q ss_pred CCCCCCCChHHHHHhchhhHHHHHHHhhHHHHHHH
Q 011344 77 LSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQL 111 (488)
Q Consensus 77 lp~~hvps~kel~~hgr~dlan~vrrrgyk~i~~l 111 (488)
+|--|++++.+|.+.-+.+||.+++ ..-++.+.+
T Consensus 44 iPk~H~~~l~dL~~~e~~~l~~~~~-~~~~~~~~~ 77 (119)
T 4egu_A 44 VPKKHYDSLIDIPDKEMDIVSHIHV-VINKIAKEK 77 (119)
T ss_dssp EESSCCSSGGGSCGGGTHHHHHHHH-HHHHHHHHH
T ss_pred EechhhCCHhHCCHhHHHHHHHHHH-HHHHHHHHh
Confidence 5778999999999998999999997 677777765
No 56
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=23.68 E-value=89 Score=32.73 Aligned_cols=50 Identities=10% Similarity=0.026 Sum_probs=33.3
Q ss_pred EEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCC---cEEEEEEeCCeeEEEEEEE
Q 011344 397 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSR---LWSTVLWLYPGTYEIKFIV 462 (488)
Q Consensus 397 r~VtFtW~g~-AkeV~LAGSFNNW~~~IpM~Kqpss~~~a~~gskksG---vWsttL~LPPG~YEYKFIV 462 (488)
..|.|+-+.+ ...|.+.|. .+++|.+. ...+ .|.+.+..+.....|+|.|
T Consensus 125 ~~~r~~~~~~~~~~~~~~~~-----~~~~m~~~-----------~~~~~~d~w~~~v~~~~~~~~Y~f~i 178 (645)
T 4aef_A 125 VHVLLRTQKGVIKGATFLGE-----KHVPMRKK-----------ASDELFDYFEVIVEGGDKRLNYSFEV 178 (645)
T ss_dssp EEEEEEEETTTEEEEEEESS-----SEEECEEE-----------EECSSEEEEEEEEECSCSCEEEEEEE
T ss_pred EEEEEEcccCCcceEEEeCC-----CEEEEEEE-----------ecCCCeEEEEEEEECCCCceEEEEEE
Confidence 3444444333 667777753 46899875 2344 4888888887788899987
No 57
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=23.37 E-value=73 Score=26.61 Aligned_cols=33 Identities=12% Similarity=0.201 Sum_probs=27.7
Q ss_pred chHHHHHHHHHHHhcCCCCC-CCCChHHHHHhch
Q 011344 61 NEELYNDLREFLSTVGLSES-HVPSMKELSAHGR 93 (488)
Q Consensus 61 ~~el~~d~~ef~s~~~lp~~-hvps~kel~~hgr 93 (488)
-..++..|++.+..-.+|+| .+||.+||.++=.
T Consensus 15 ~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~ 48 (125)
T 3neu_A 15 YSQISDWMKKQMITGEWKGEDKLPSVREMGVKLA 48 (125)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHC
Confidence 46789999999999999887 5899999998633
No 58
>2djm_A Glucoamylase A; beta sandwich, anti-parallel, strach binding, carbohydrate binding, sugar binding protein; NMR {Rhizopus oryzae} PDB: 2v8l_A* 2v8m_A* 2vq4_A
Probab=23.04 E-value=1.2e+02 Score=25.81 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=39.7
Q ss_pred EEEEEEecC--CceEEEEee--eCCCcc-ccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEEcCE
Q 011344 398 VVEIQYSGD--GEIVEVAGS--FNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVDGQ 465 (488)
Q Consensus 398 ~VtFtW~g~--AkeV~LAGS--FNNW~~-~IpM~Kqpss~~~a~~gskksGvWsttL~LPPG-~YEYKFIVDGe 465 (488)
.-++....- .+.|.|.=+ |++|+. .....-. +. ...+...-..|...+.||+- .+-.+|.|+|.
T Consensus 22 ~GtV~V~NlafeK~V~VR~T~~~D~W~t~~~dv~a~---y~-~~~~~~~~D~F~F~i~l~~~~eFcIrY~v~g~ 91 (106)
T 2djm_A 22 SGKIYVKNIAYSKKVTVVYADGSDNWNNNGNIIAAS---FS-GPISGSNYEYWTFSASVKGIKEFYIKYEVSGK 91 (106)
T ss_dssp EEEEEECCSSSCEEEEEEEEETTSSCSSCCCEEECE---EE-EECTTSSCEEEEEEECCSSEEEEEEEEEESSC
T ss_pred EEEEEEeecCcCcEEEEEECCCcCCCccccEEEEEE---Ee-cCCCCCCeEEEEEEEECCCCeEEEEEEEECCc
Confidence 334444442 688888888 999987 4221100 00 00112345689999999866 67789999985
No 59
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=21.73 E-value=68 Score=25.80 Aligned_cols=33 Identities=30% Similarity=0.386 Sum_probs=22.6
Q ss_pred hhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 011344 330 QLEIDHLKFMLHQKEMELSRLKEQIEKEKLALS 362 (488)
Q Consensus 330 ~~ei~~l~~mlhQkelE~~~lk~q~e~tK~aLa 362 (488)
+.-|..|++.|.+|.-|+.+|++++.|-...|.
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445777888888888888888888887776664
No 60
>1igd_A Protein G; immunoglobulin binding protein; 1.10A {Streptococcus SP} SCOP: d.15.7.1 PDB: 1igc_A 2igd_A 2igh_A 1qkz_A 2igg_A 1uwx_A 3mp9_A
Probab=20.74 E-value=33 Score=27.32 Aligned_cols=14 Identities=36% Similarity=0.781 Sum_probs=10.7
Q ss_pred EcCEeeeCCCCCee
Q 011344 462 VDGQWKVDPQRESV 475 (488)
Q Consensus 462 VDGeW~~DPdnPtV 475 (488)
|||+|.+||.-.+.
T Consensus 44 vdgew~yd~atktf 57 (61)
T 1igd_A 44 VDGVWTYDDATKTF 57 (61)
T ss_dssp CCCEEEEETTTTEE
T ss_pred CCceEeecCceeEE
Confidence 58999999876543
Done!