Query 011345
Match_columns 488
No_of_seqs 182 out of 727
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 00:18:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0709 CREB/ATF family transc 99.6 1.9E-15 4.1E-20 158.1 5.4 112 126-255 241-355 (472)
2 KOG4005 Transcription factor X 99.3 9.3E-12 2E-16 122.3 10.4 85 119-203 53-137 (292)
3 PF00170 bZIP_1: bZIP transcri 99.3 1.3E-11 2.8E-16 97.4 9.2 63 131-193 1-63 (64)
4 smart00338 BRLZ basic region l 99.3 1.4E-11 3.1E-16 97.3 9.0 62 132-193 2-63 (65)
5 KOG4343 bZIP transcription fac 99.3 9.8E-12 2.1E-16 132.3 7.9 70 130-199 276-345 (655)
6 KOG3584 cAMP response element 99.1 2.2E-10 4.7E-15 115.2 8.6 57 130-186 286-342 (348)
7 PF07716 bZIP_2: Basic region 98.9 1.3E-08 2.9E-13 78.4 8.8 51 133-184 3-53 (54)
8 PF03131 bZIP_Maf: bZIP Maf tr 98.0 9.8E-08 2.1E-12 80.8 -6.0 65 127-191 21-86 (92)
9 KOG4571 Activating transcripti 97.6 0.00064 1.4E-08 69.2 11.1 63 134-203 226-288 (294)
10 KOG0837 Transcriptional activa 97.5 0.00044 9.6E-09 69.6 8.7 52 133-184 204-255 (279)
11 KOG3119 Basic region leucine z 97.1 0.0064 1.4E-07 60.9 12.2 65 132-203 191-255 (269)
12 KOG4196 bZIP transcription fac 97.0 0.0068 1.5E-07 55.9 10.7 73 127-206 44-117 (135)
13 KOG3863 bZIP transcription fac 96.2 0.01 2.2E-07 65.7 6.8 65 133-197 488-552 (604)
14 PF06156 DUF972: Protein of un 95.0 0.12 2.6E-06 45.9 7.9 50 156-205 8-57 (107)
15 PRK13169 DNA replication intia 94.8 0.14 3.1E-06 45.8 7.9 49 156-204 8-56 (110)
16 PF06005 DUF904: Protein of un 94.8 0.21 4.5E-06 41.7 8.3 49 156-204 4-52 (72)
17 PF08614 ATG16: Autophagy prot 93.7 1 2.2E-05 42.8 11.6 76 133-208 114-189 (194)
18 PRK13729 conjugal transfer pil 93.7 0.49 1.1E-05 51.6 10.5 48 156-203 76-123 (475)
19 PRK10884 SH3 domain-containing 93.4 1 2.3E-05 44.0 11.4 72 130-201 98-170 (206)
20 KOG1414 Transcriptional activa 93.2 0.0069 1.5E-07 63.5 -4.2 64 130-200 149-216 (395)
21 KOG4005 Transcription factor X 91.5 2.2 4.8E-05 43.5 11.1 90 115-204 52-145 (292)
22 PF13747 DUF4164: Domain of un 90.6 5.2 0.00011 34.5 11.1 75 130-204 6-80 (89)
23 COG4467 Regulator of replicati 90.5 1.1 2.3E-05 40.7 7.1 47 156-202 8-54 (114)
24 TIGR02894 DNA_bind_RsfA transc 90.5 1.4 3E-05 42.2 8.2 39 165-203 99-137 (161)
25 PF10224 DUF2205: Predicted co 90.3 2.7 5.8E-05 36.0 9.0 47 159-205 19-65 (80)
26 PF02183 HALZ: Homeobox associ 90.2 0.98 2.1E-05 34.7 5.7 39 167-205 2-40 (45)
27 TIGR02449 conserved hypothetic 90.0 1.4 3E-05 36.5 6.9 42 159-200 3-44 (65)
28 PRK10884 SH3 domain-containing 89.6 5.3 0.00011 39.2 11.7 56 150-205 112-167 (206)
29 COG3074 Uncharacterized protei 88.7 1.4 3E-05 37.5 6.0 45 157-201 19-63 (79)
30 PRK02119 hypothetical protein; 88.6 3.8 8.2E-05 34.2 8.5 50 155-204 8-57 (73)
31 PF04102 SlyX: SlyX; InterPro 88.6 2.4 5.1E-05 34.7 7.2 49 156-204 4-52 (69)
32 TIGR00219 mreC rod shape-deter 88.4 1.1 2.3E-05 45.5 6.3 37 164-200 67-107 (283)
33 PRK04406 hypothetical protein; 87.8 4.4 9.6E-05 34.0 8.5 49 156-204 11-59 (75)
34 PRK02793 phi X174 lysis protei 87.2 5.3 0.00011 33.2 8.6 49 156-204 8-56 (72)
35 PF11559 ADIP: Afadin- and alp 86.9 11 0.00024 34.3 11.3 65 133-197 43-107 (151)
36 PRK00295 hypothetical protein; 86.3 7.1 0.00015 32.1 8.8 49 156-204 5-53 (68)
37 PRK00846 hypothetical protein; 86.2 6.2 0.00013 33.7 8.6 50 155-204 12-61 (77)
38 COG4026 Uncharacterized protei 85.7 4.8 0.0001 40.9 8.9 51 155-205 141-191 (290)
39 PF06005 DUF904: Protein of un 85.7 6.1 0.00013 33.1 8.2 35 165-199 20-54 (72)
40 PF06156 DUF972: Protein of un 85.4 3.8 8.2E-05 36.6 7.3 50 160-209 5-54 (107)
41 KOG1962 B-cell receptor-associ 84.7 7.1 0.00015 39.0 9.6 48 154-201 163-210 (216)
42 TIGR02449 conserved hypothetic 84.2 7.6 0.00016 32.3 8.0 50 156-205 7-56 (65)
43 PF09726 Macoilin: Transmembra 84.2 7.3 0.00016 44.5 10.6 41 158-198 540-580 (697)
44 PRK13922 rod shape-determining 83.9 7.1 0.00015 38.6 9.3 37 165-201 71-110 (276)
45 PF15058 Speriolin_N: Sperioli 83.8 2.5 5.4E-05 41.7 5.9 39 158-204 7-45 (200)
46 PRK00736 hypothetical protein; 83.3 10 0.00022 31.2 8.5 49 156-204 5-53 (68)
47 PF10473 CENP-F_leu_zip: Leuci 83.3 23 0.00049 33.3 11.7 74 130-203 26-99 (140)
48 PRK15422 septal ring assembly 83.2 5.1 0.00011 34.5 6.8 45 158-202 20-64 (79)
49 PRK04325 hypothetical protein; 83.0 8.2 0.00018 32.2 7.9 49 156-204 9-57 (74)
50 KOG4343 bZIP transcription fac 82.2 4.4 9.6E-05 45.3 7.6 34 173-206 305-338 (655)
51 PRK11637 AmiB activator; Provi 82.0 18 0.0004 38.2 11.9 59 147-205 66-124 (428)
52 PF14197 Cep57_CLD_2: Centroso 81.9 10 0.00022 31.5 7.9 48 156-203 12-59 (69)
53 PF11559 ADIP: Afadin- and alp 81.5 12 0.00025 34.1 9.0 43 160-202 77-119 (151)
54 PRK13169 DNA replication intia 81.1 7.3 0.00016 35.1 7.4 47 160-206 5-51 (110)
55 KOG1103 Predicted coiled-coil 81.1 6.7 0.00015 42.2 8.3 99 145-249 227-326 (561)
56 smart00338 BRLZ basic region l 81.0 6.7 0.00014 31.1 6.4 40 161-200 24-63 (65)
57 PF10186 Atg14: UV radiation r 81.0 21 0.00045 34.7 11.1 46 153-198 60-105 (302)
58 PF09726 Macoilin: Transmembra 80.8 25 0.00054 40.4 13.2 21 184-204 636-656 (697)
59 PRK11637 AmiB activator; Provi 80.6 19 0.00041 38.1 11.5 22 406-427 356-377 (428)
60 PF07888 CALCOCO1: Calcium bin 80.1 20 0.00044 40.2 11.8 67 132-198 147-213 (546)
61 PF07926 TPR_MLP1_2: TPR/MLP1/ 79.9 25 0.00053 31.7 10.5 35 169-203 97-131 (132)
62 KOG1414 Transcriptional activa 79.8 0.34 7.4E-06 51.1 -1.6 49 128-176 278-326 (395)
63 PF13851 GAS: Growth-arrest sp 79.5 28 0.00061 33.9 11.4 64 127-190 64-127 (201)
64 PF06785 UPF0242: Uncharacteri 79.3 7.6 0.00017 41.4 7.9 53 150-202 121-173 (401)
65 PF11932 DUF3450: Protein of u 79.2 33 0.0007 33.8 11.9 44 160-203 53-96 (251)
66 TIGR03752 conj_TIGR03752 integ 79.0 7.2 0.00016 42.9 7.9 19 159-177 76-94 (472)
67 PF08647 BRE1: BRE1 E3 ubiquit 78.9 34 0.00073 29.6 10.5 66 138-203 6-71 (96)
68 PF12711 Kinesin-relat_1: Kine 78.7 11 0.00024 32.9 7.4 41 167-207 21-67 (86)
69 PF01166 TSC22: TSC-22/dip/bun 78.3 2.7 5.9E-05 34.4 3.4 31 170-200 14-44 (59)
70 PRK15422 septal ring assembly 77.8 14 0.00031 31.9 7.7 39 157-195 5-43 (79)
71 PF12718 Tropomyosin_1: Tropom 77.4 12 0.00027 34.5 7.9 49 155-203 13-61 (143)
72 PF05103 DivIVA: DivIVA protei 77.2 1.4 2.9E-05 38.5 1.6 47 156-202 25-71 (131)
73 PF07989 Microtub_assoc: Micro 77.2 12 0.00026 31.5 7.1 47 158-204 2-56 (75)
74 COG3074 Uncharacterized protei 76.0 17 0.00037 31.1 7.6 54 152-205 21-74 (79)
75 PF00170 bZIP_1: bZIP transcri 75.9 13 0.00029 29.4 6.7 37 163-199 26-62 (64)
76 PRK00888 ftsB cell division pr 75.7 12 0.00025 33.2 6.9 31 153-183 31-61 (105)
77 PRK10803 tol-pal system protei 75.1 23 0.0005 35.6 9.8 49 157-205 55-103 (263)
78 PF15294 Leu_zip: Leucine zipp 75.1 9.3 0.0002 39.5 7.1 45 161-205 130-174 (278)
79 PF04111 APG6: Autophagy prote 75.0 12 0.00025 38.7 7.8 9 352-360 263-271 (314)
80 KOG1962 B-cell receptor-associ 74.9 21 0.00046 35.7 9.3 43 161-203 149-191 (216)
81 PF05377 FlaC_arch: Flagella a 73.9 14 0.00029 30.0 6.2 33 158-190 2-34 (55)
82 PF02183 HALZ: Homeobox associ 73.7 14 0.00031 28.4 6.1 40 161-200 3-42 (45)
83 PF04880 NUDE_C: NUDE protein, 73.6 5.5 0.00012 38.2 4.7 42 158-203 2-43 (166)
84 PF12808 Mto2_bdg: Micro-tubul 73.3 10 0.00022 30.3 5.4 49 153-204 1-49 (52)
85 PF12709 Kinetocho_Slk19: Cent 72.8 19 0.00042 31.5 7.4 43 154-196 40-82 (87)
86 PF09755 DUF2046: Uncharacteri 72.7 11 0.00024 39.5 7.0 47 159-205 23-69 (310)
87 KOG0995 Centromere-associated 72.7 22 0.00048 40.1 9.6 50 153-202 277-326 (581)
88 PF11932 DUF3450: Protein of u 72.7 45 0.00098 32.9 11.0 56 147-202 47-102 (251)
89 PF07106 TBPIP: Tat binding pr 72.6 15 0.00032 34.1 7.2 52 154-205 84-137 (169)
90 PF05529 Bap31: B-cell recepto 72.5 28 0.0006 32.9 9.1 37 168-204 152-188 (192)
91 PF05266 DUF724: Protein of un 72.0 43 0.00093 32.6 10.4 53 133-185 87-139 (190)
92 PF07407 Seadorna_VP6: Seadorn 71.8 6.8 0.00015 41.7 5.2 26 164-189 33-58 (420)
93 COG4026 Uncharacterized protei 71.4 19 0.00041 36.8 8.0 21 183-203 183-203 (290)
94 PF04977 DivIC: Septum formati 71.3 12 0.00026 29.7 5.6 27 156-182 24-50 (80)
95 PF03962 Mnd1: Mnd1 family; I 70.9 32 0.00068 33.2 9.2 24 182-205 108-131 (188)
96 PRK00888 ftsB cell division pr 70.9 16 0.00036 32.2 6.7 34 158-191 29-62 (105)
97 PF14662 CCDC155: Coiled-coil 70.8 24 0.00052 34.9 8.4 41 160-200 99-139 (193)
98 PF08172 CASP_C: CASP C termin 70.1 17 0.00038 36.6 7.6 42 157-205 94-135 (248)
99 COG2900 SlyX Uncharacterized p 69.9 41 0.00089 28.7 8.5 50 156-205 8-57 (72)
100 COG2433 Uncharacterized conser 69.6 16 0.00034 41.6 7.7 17 62-78 313-329 (652)
101 TIGR02209 ftsL_broad cell divi 69.4 18 0.0004 29.5 6.3 31 174-204 28-58 (85)
102 PHA02562 46 endonuclease subun 69.4 46 0.00099 35.7 11.0 32 161-192 363-394 (562)
103 PF04111 APG6: Autophagy prote 69.2 75 0.0016 33.0 12.1 62 144-205 73-134 (314)
104 PF08614 ATG16: Autophagy prot 68.8 28 0.00061 33.1 8.4 48 157-204 124-171 (194)
105 PF09304 Cortex-I_coil: Cortex 68.5 38 0.00083 30.8 8.5 56 136-191 17-72 (107)
106 COG4942 Membrane-bound metallo 68.0 52 0.0011 36.0 11.0 72 135-206 38-109 (420)
107 KOG2483 Upstream transcription 67.8 47 0.001 33.5 10.0 35 173-207 108-142 (232)
108 KOG4797 Transcriptional regula 67.5 12 0.00026 34.3 5.2 36 169-204 66-106 (123)
109 PF05812 Herpes_BLRF2: Herpesv 67.4 9 0.0002 35.2 4.5 28 154-181 1-28 (118)
110 PF14662 CCDC155: Coiled-coil 67.3 20 0.00044 35.4 7.1 40 161-200 13-52 (193)
111 PRK09039 hypothetical protein; 67.1 59 0.0013 34.1 10.9 45 159-203 133-177 (343)
112 TIGR02894 DNA_bind_RsfA transc 66.7 26 0.00057 33.7 7.6 38 154-191 109-146 (161)
113 PF14915 CCDC144C: CCDC144C pr 66.1 42 0.0009 35.3 9.4 64 144-207 181-244 (305)
114 PF04977 DivIC: Septum formati 65.7 26 0.00057 27.8 6.4 29 175-203 22-50 (80)
115 PF14197 Cep57_CLD_2: Centroso 64.9 46 0.00099 27.7 7.8 46 158-203 21-66 (69)
116 PF09727 CortBP2: Cortactin-bi 64.7 59 0.0013 32.1 9.7 46 157-202 128-173 (192)
117 COG4467 Regulator of replicati 64.5 30 0.00066 31.7 7.1 50 160-209 5-54 (114)
118 smart00340 HALZ homeobox assoc 64.4 14 0.0003 28.8 4.2 26 180-205 8-33 (44)
119 PF12325 TMF_TATA_bd: TATA ele 64.4 87 0.0019 28.6 10.1 45 130-174 18-62 (120)
120 KOG0971 Microtubule-associated 64.3 2.5E+02 0.0055 34.1 15.9 105 86-190 180-289 (1243)
121 PHA03162 hypothetical protein; 64.3 4.8 0.0001 37.6 2.2 28 153-180 10-37 (135)
122 PF10211 Ax_dynein_light: Axon 63.7 52 0.0011 31.7 9.1 48 158-205 122-169 (189)
123 PRK12704 phosphodiesterase; Pr 63.5 65 0.0014 35.7 10.9 7 372-378 367-373 (520)
124 PF04871 Uso1_p115_C: Uso1 / p 63.3 1.1E+02 0.0023 28.4 10.6 54 151-204 57-111 (136)
125 PF04728 LPP: Lipoprotein leuc 63.3 68 0.0015 26.2 8.2 47 156-202 3-49 (56)
126 PF08826 DMPK_coil: DMPK coile 62.9 73 0.0016 26.2 8.4 41 164-204 19-59 (61)
127 PF09789 DUF2353: Uncharacteri 62.1 59 0.0013 34.3 9.8 47 159-205 68-114 (319)
128 KOG0977 Nuclear envelope prote 61.8 60 0.0013 36.6 10.3 60 145-204 130-189 (546)
129 PHA03155 hypothetical protein; 61.7 10 0.00022 34.8 3.7 25 157-181 9-33 (115)
130 PF15070 GOLGA2L5: Putative go 61.6 67 0.0014 36.6 10.8 45 152-196 118-186 (617)
131 PF05266 DUF724: Protein of un 61.4 1.3E+02 0.0028 29.4 11.3 52 151-202 126-177 (190)
132 PF05700 BCAS2: Breast carcino 61.2 1.1E+02 0.0024 30.0 11.0 43 161-203 173-215 (221)
133 PRK09039 hypothetical protein; 60.4 73 0.0016 33.4 10.2 39 158-196 139-177 (343)
134 KOG4196 bZIP transcription fac 60.2 37 0.0008 32.0 7.1 32 173-204 77-108 (135)
135 KOG3650 Predicted coiled-coil 60.0 39 0.00085 30.7 7.0 41 165-205 65-105 (120)
136 PF04859 DUF641: Plant protein 59.9 27 0.00059 32.4 6.2 44 156-199 87-130 (131)
137 COG1579 Zn-ribbon protein, pos 59.4 86 0.0019 31.9 10.1 47 156-202 89-135 (239)
138 PF09738 DUF2051: Double stran 59.0 43 0.00093 34.9 8.1 71 130-203 87-166 (302)
139 PRK04406 hypothetical protein; 58.6 76 0.0017 26.7 8.1 48 158-205 6-53 (75)
140 KOG4571 Activating transcripti 58.4 57 0.0012 34.2 8.8 68 122-189 217-288 (294)
141 KOG1103 Predicted coiled-coil 58.1 58 0.0012 35.4 9.0 67 133-202 112-178 (561)
142 PF03980 Nnf1: Nnf1 ; InterPr 56.9 18 0.00038 31.4 4.3 30 154-183 78-107 (109)
143 PRK14127 cell division protein 56.8 34 0.00074 30.9 6.1 28 156-183 30-57 (109)
144 PF07888 CALCOCO1: Calcium bin 56.7 1E+02 0.0023 34.8 11.0 31 174-204 421-451 (546)
145 KOG0250 DNA repair protein RAD 56.7 1E+02 0.0022 37.4 11.5 35 316-350 570-604 (1074)
146 PF04999 FtsL: Cell division p 56.4 28 0.0006 29.4 5.3 43 169-211 34-76 (97)
147 PF10226 DUF2216: Uncharacteri 56.3 88 0.0019 31.1 9.3 57 131-187 19-79 (195)
148 PF01486 K-box: K-box region; 56.2 43 0.00092 28.7 6.4 30 172-201 70-99 (100)
149 KOG1318 Helix loop helix trans 56.1 1.2E+02 0.0026 33.2 11.1 77 128-204 222-317 (411)
150 PRK02119 hypothetical protein; 56.1 90 0.0019 26.1 8.1 48 158-205 4-51 (73)
151 PF07558 Shugoshin_N: Shugoshi 55.6 13 0.00029 28.6 2.9 35 166-200 10-44 (46)
152 KOG0982 Centrosomal protein Nu 55.6 81 0.0017 35.0 9.7 47 155-201 296-342 (502)
153 PF07716 bZIP_2: Basic region 55.5 35 0.00076 26.3 5.3 30 175-204 23-52 (54)
154 PF08317 Spc7: Spc7 kinetochor 55.3 54 0.0012 33.8 8.1 16 158-173 211-226 (325)
155 PF08232 Striatin: Striatin fa 55.2 43 0.00094 30.7 6.7 59 139-204 15-73 (134)
156 PF10805 DUF2730: Protein of u 55.1 61 0.0013 28.6 7.3 47 156-202 49-97 (106)
157 PF12325 TMF_TATA_bd: TATA ele 54.6 74 0.0016 29.1 8.0 68 136-203 38-108 (120)
158 PRK00106 hypothetical protein; 54.2 1.2E+02 0.0025 34.2 10.9 6 373-378 383-388 (535)
159 KOG3119 Basic region leucine z 54.1 69 0.0015 32.6 8.5 25 158-182 224-248 (269)
160 COG1792 MreC Cell shape-determ 54.0 38 0.00083 34.6 6.8 42 157-202 67-108 (284)
161 PF11544 Spc42p: Spindle pole 53.9 1E+02 0.0022 26.7 8.1 47 159-205 8-54 (76)
162 PF10473 CENP-F_leu_zip: Leuci 53.4 2E+02 0.0043 27.1 11.6 33 168-200 78-110 (140)
163 PF11365 DUF3166: Protein of u 53.2 49 0.0011 29.5 6.4 37 168-204 6-42 (96)
164 PF10224 DUF2205: Predicted co 52.9 69 0.0015 27.6 7.1 37 156-192 30-66 (80)
165 COG1382 GimC Prefoldin, chaper 52.7 63 0.0014 29.8 7.2 40 153-192 67-106 (119)
166 TIGR03319 YmdA_YtgF conserved 52.4 1.3E+02 0.0028 33.5 10.9 21 459-479 418-445 (514)
167 KOG3335 Predicted coiled-coil 51.9 20 0.00042 35.2 4.1 32 152-183 102-133 (181)
168 PF03670 UPF0184: Uncharacteri 51.8 1.1E+02 0.0023 26.8 8.1 46 160-205 30-75 (83)
169 PF08232 Striatin: Striatin fa 51.8 90 0.0019 28.7 8.2 43 161-203 16-58 (134)
170 PF13805 Pil1: Eisosome compon 51.5 51 0.0011 34.1 7.1 60 139-203 131-191 (271)
171 PF08317 Spc7: Spc7 kinetochor 51.3 69 0.0015 33.0 8.2 10 194-203 279-288 (325)
172 COG3883 Uncharacterized protei 51.3 2E+02 0.0043 29.9 11.3 60 132-191 35-94 (265)
173 TIGR03752 conj_TIGR03752 integ 51.0 34 0.00073 37.9 6.1 29 156-184 66-94 (472)
174 PF04849 HAP1_N: HAP1 N-termin 50.9 43 0.00093 35.2 6.6 44 156-199 160-203 (306)
175 PF13815 Dzip-like_N: Iguana/D 50.8 60 0.0013 28.9 6.7 33 171-203 81-113 (118)
176 PF10805 DUF2730: Protein of u 50.8 1.1E+02 0.0024 27.0 8.2 41 162-202 48-90 (106)
177 PF09744 Jnk-SapK_ap_N: JNK_SA 50.8 1.5E+02 0.0033 28.3 9.7 14 168-181 87-100 (158)
178 PF14282 FlxA: FlxA-like prote 50.6 69 0.0015 28.2 7.0 45 159-203 29-77 (106)
179 COG3883 Uncharacterized protei 50.5 79 0.0017 32.7 8.3 49 156-204 52-100 (265)
180 KOG4643 Uncharacterized coiled 50.4 1.5E+02 0.0033 36.1 11.4 50 155-204 529-588 (1195)
181 PF05911 DUF869: Plant protein 50.3 1.6E+02 0.0034 34.7 11.5 48 156-203 92-160 (769)
182 PF14645 Chibby: Chibby family 50.2 66 0.0014 29.2 6.9 40 161-200 76-115 (116)
183 PF12709 Kinetocho_Slk19: Cent 50.1 65 0.0014 28.3 6.6 47 156-202 27-74 (87)
184 PF01920 Prefoldin_2: Prefoldi 50.0 51 0.0011 27.5 5.9 36 156-191 62-97 (106)
185 TIGR02209 ftsL_broad cell divi 49.7 61 0.0013 26.4 6.1 31 153-183 28-58 (85)
186 KOG4001 Axonemal dynein light 49.5 1.6E+02 0.0035 30.0 10.0 23 183-205 234-256 (259)
187 PF05377 FlaC_arch: Flagella a 49.1 62 0.0013 26.3 5.8 28 159-186 10-37 (55)
188 PF00038 Filament: Intermediat 49.0 2.2E+02 0.0048 28.4 11.1 39 165-203 211-249 (312)
189 PTZ00454 26S protease regulato 48.3 70 0.0015 34.1 7.9 37 161-204 27-63 (398)
190 cd07596 BAR_SNX The Bin/Amphip 48.3 2.2E+02 0.0048 26.1 10.6 68 133-203 108-182 (218)
191 PF04156 IncA: IncA protein; 48.1 2.3E+02 0.0051 26.3 11.6 48 149-196 123-170 (191)
192 PHA02562 46 endonuclease subun 47.9 1.8E+02 0.0039 31.2 10.9 13 155-167 336-348 (562)
193 PF12329 TMF_DNA_bd: TATA elem 47.7 1.4E+02 0.003 25.0 7.9 50 154-203 10-59 (74)
194 PRK14872 rod shape-determining 47.1 45 0.00097 35.4 6.1 37 164-200 58-97 (337)
195 KOG0946 ER-Golgi vesicle-tethe 46.7 1.8E+02 0.0038 34.8 11.1 64 139-202 654-717 (970)
196 PF01166 TSC22: TSC-22/dip/bun 46.4 31 0.00067 28.4 3.8 24 159-182 17-40 (59)
197 cd07599 BAR_Rvs167p The Bin/Am 46.2 2.1E+02 0.0046 27.4 10.2 57 149-205 117-181 (216)
198 PF06785 UPF0242: Uncharacteri 46.1 1.6E+02 0.0035 31.9 9.9 70 133-206 73-156 (401)
199 PRK02793 phi X174 lysis protei 46.1 1.5E+02 0.0032 24.7 7.9 47 159-205 4-50 (72)
200 PF05278 PEARLI-4: Arabidopsis 46.0 2.8E+02 0.0062 28.9 11.4 47 155-201 206-252 (269)
201 KOG2129 Uncharacterized conser 46.0 29 0.00062 38.3 4.6 41 159-199 46-86 (552)
202 PF07412 Geminin: Geminin; In 45.7 71 0.0015 31.8 6.9 31 170-200 125-155 (200)
203 PF15035 Rootletin: Ciliary ro 45.5 92 0.002 30.2 7.5 41 163-203 74-114 (182)
204 PRK04325 hypothetical protein; 45.4 1.2E+02 0.0026 25.4 7.3 48 158-205 4-51 (74)
205 PTZ00454 26S protease regulato 45.2 64 0.0014 34.4 7.0 32 156-187 29-60 (398)
206 PF03980 Nnf1: Nnf1 ; InterPr 45.2 1.4E+02 0.003 25.9 7.9 30 175-204 78-107 (109)
207 PF10205 KLRAQ: Predicted coil 44.7 74 0.0016 28.7 6.2 46 163-208 26-71 (102)
208 PF05557 MAD: Mitotic checkpoi 44.6 89 0.0019 35.6 8.4 21 184-204 566-586 (722)
209 PRK03992 proteasome-activating 44.5 82 0.0018 33.1 7.6 37 160-196 12-48 (389)
210 COG4942 Membrane-bound metallo 44.4 1.6E+02 0.0035 32.4 9.9 72 133-204 50-121 (420)
211 KOG2391 Vacuolar sorting prote 44.4 1.1E+02 0.0023 33.1 8.3 37 166-202 242-278 (365)
212 PRK13729 conjugal transfer pil 44.3 79 0.0017 35.2 7.6 33 442-474 393-425 (475)
213 PF03245 Phage_lysis: Bacterio 44.3 2.5E+02 0.0054 25.5 10.0 22 181-202 39-60 (125)
214 PF14988 DUF4515: Domain of un 44.2 3.3E+02 0.0071 26.9 11.2 47 158-204 151-197 (206)
215 PF08826 DMPK_coil: DMPK coile 44.0 1.8E+02 0.0039 23.9 9.6 33 157-189 26-58 (61)
216 PF05812 Herpes_BLRF2: Herpesv 43.9 34 0.00074 31.5 4.1 27 179-205 5-31 (118)
217 COG1579 Zn-ribbon protein, pos 43.8 3.2E+02 0.0069 27.9 11.3 41 139-179 35-75 (239)
218 PF06698 DUF1192: Protein of u 43.8 75 0.0016 26.1 5.6 25 158-182 23-47 (59)
219 PF04102 SlyX: SlyX; InterPro 43.4 1.5E+02 0.0033 24.2 7.5 45 161-205 2-46 (69)
220 PRK00846 hypothetical protein; 43.3 1.6E+02 0.0034 25.4 7.7 47 159-205 9-55 (77)
221 PRK03992 proteasome-activating 43.2 74 0.0016 33.5 7.1 48 158-205 3-50 (389)
222 PF15136 UPF0449: Uncharacteri 43.0 1.2E+02 0.0025 27.3 7.1 41 162-202 56-96 (97)
223 PF13118 DUF3972: Protein of u 42.5 1.2E+02 0.0026 28.4 7.4 47 157-203 79-125 (126)
224 PF10482 CtIP_N: Tumour-suppre 42.4 1.4E+02 0.0029 27.8 7.6 50 154-203 12-61 (120)
225 PF10211 Ax_dynein_light: Axon 42.2 2.8E+02 0.0061 26.8 10.3 36 152-187 123-158 (189)
226 PF04568 IATP: Mitochondrial A 42.2 1.4E+02 0.003 26.8 7.5 45 141-185 54-98 (100)
227 PF00038 Filament: Intermediat 42.2 3.7E+02 0.0079 26.9 11.5 30 153-182 220-249 (312)
228 smart00340 HALZ homeobox assoc 42.2 57 0.0012 25.5 4.4 26 158-183 7-32 (44)
229 PF11180 DUF2968: Protein of u 42.1 3.7E+02 0.0079 26.9 11.7 68 138-205 108-175 (192)
230 KOG2077 JNK/SAPK-associated pr 42.0 45 0.00098 38.2 5.5 47 159-205 325-371 (832)
231 KOG2577 Transcription factor E 41.9 3.6E+02 0.0078 29.2 11.8 52 154-205 142-199 (354)
232 PF06810 Phage_GP20: Phage min 41.4 96 0.0021 29.2 6.8 34 154-187 32-68 (155)
233 KOG0977 Nuclear envelope prote 41.0 2.2E+02 0.0048 32.3 10.5 26 159-184 165-190 (546)
234 PF09755 DUF2046: Uncharacteri 40.9 1E+02 0.0022 32.6 7.5 24 179-202 180-203 (310)
235 KOG0161 Myosin class II heavy 40.8 2.1E+02 0.0045 37.1 11.2 66 140-205 1644-1709(1930)
236 PF12718 Tropomyosin_1: Tropom 40.8 1.5E+02 0.0032 27.6 7.8 28 157-184 36-63 (143)
237 PF13815 Dzip-like_N: Iguana/D 40.7 1.1E+02 0.0023 27.3 6.7 40 161-200 78-117 (118)
238 PRK14160 heat shock protein Gr 40.3 1.1E+02 0.0024 30.5 7.4 41 160-200 58-98 (211)
239 PF11180 DUF2968: Protein of u 40.2 2.6E+02 0.0056 27.9 9.7 27 163-189 154-180 (192)
240 PF10205 KLRAQ: Predicted coil 40.0 2E+02 0.0042 26.1 8.1 31 157-187 41-71 (102)
241 KOG0980 Actin-binding protein 39.6 2.5E+02 0.0053 33.9 10.9 67 139-205 449-515 (980)
242 PF10186 Atg14: UV radiation r 39.5 3.7E+02 0.008 26.1 11.9 7 296-302 220-226 (302)
243 KOG0250 DNA repair protein RAD 39.4 2.8E+02 0.006 34.0 11.4 52 153-204 369-428 (1074)
244 PF12999 PRKCSH-like: Glucosid 39.0 1.8E+02 0.0039 28.5 8.4 35 148-182 138-172 (176)
245 COG4985 ABC-type phosphate tra 38.9 1.5E+02 0.0032 30.8 8.0 28 175-202 219-246 (289)
246 PHA03155 hypothetical protein; 38.8 38 0.00083 31.1 3.6 24 179-202 10-33 (115)
247 KOG0999 Microtubule-associated 38.6 2.7E+02 0.0058 32.2 10.6 36 165-200 172-210 (772)
248 PF10779 XhlA: Haemolysin XhlA 38.6 1.6E+02 0.0034 24.1 6.8 30 161-190 18-47 (71)
249 PF11544 Spc42p: Spindle pole 38.6 93 0.002 26.9 5.6 11 188-198 44-54 (76)
250 PF04849 HAP1_N: HAP1 N-termin 38.4 1.3E+02 0.0027 31.9 7.7 27 175-201 239-265 (306)
251 PHA03162 hypothetical protein; 38.3 42 0.0009 31.6 3.8 27 179-205 15-41 (135)
252 PRK02224 chromosome segregatio 38.2 3.3E+02 0.007 31.3 11.6 21 184-204 572-592 (880)
253 PRK00295 hypothetical protein; 38.1 1.8E+02 0.0038 24.0 7.1 45 161-205 3-47 (68)
254 PF02403 Seryl_tRNA_N: Seryl-t 38.0 2.6E+02 0.0056 23.9 9.5 31 173-203 70-100 (108)
255 TIGR02977 phageshock_pspA phag 37.9 2.6E+02 0.0057 27.2 9.5 49 155-203 98-146 (219)
256 TIGR02231 conserved hypothetic 37.8 3.7E+02 0.008 29.4 11.5 46 160-205 128-173 (525)
257 PF04156 IncA: IncA protein; 37.6 3.4E+02 0.0074 25.2 11.4 39 163-201 130-168 (191)
258 PF15397 DUF4618: Domain of un 37.6 4.7E+02 0.01 27.1 11.5 73 133-205 142-221 (258)
259 KOG1853 LIS1-interacting prote 37.6 5.2E+02 0.011 27.3 11.9 55 150-204 127-184 (333)
260 PF09766 FimP: Fms-interacting 37.3 1.5E+02 0.0033 31.2 8.2 51 150-200 102-152 (355)
261 COG1196 Smc Chromosome segrega 37.2 2.9E+02 0.0063 33.4 11.4 46 157-202 440-485 (1163)
262 KOG0964 Structural maintenance 37.0 3.3E+02 0.0072 33.4 11.4 58 146-203 408-465 (1200)
263 PRK10803 tol-pal system protei 37.0 1.3E+02 0.0029 30.2 7.5 48 153-200 58-105 (263)
264 PF07926 TPR_MLP1_2: TPR/MLP1/ 36.9 1.9E+02 0.0042 26.0 7.8 70 133-203 44-117 (132)
265 KOG2264 Exostosin EXT1L [Signa 36.8 1.5E+02 0.0032 34.4 8.3 40 432-477 378-417 (907)
266 PF15035 Rootletin: Ciliary ro 36.8 1.4E+02 0.0031 28.9 7.4 24 165-188 90-113 (182)
267 PF08961 DUF1875: Domain of un 36.7 12 0.00025 38.0 0.0 40 157-196 123-162 (243)
268 COG3879 Uncharacterized protei 36.4 1.5E+02 0.0032 30.6 7.7 44 160-203 54-101 (247)
269 PF08962 DUF1876: Domain of un 36.2 35 0.00076 29.9 2.8 20 4-23 52-71 (87)
270 PF05837 CENP-H: Centromere pr 36.1 1.2E+02 0.0026 26.8 6.2 24 161-184 15-38 (106)
271 TIGR03319 YmdA_YtgF conserved 36.0 4.3E+02 0.0094 29.5 11.8 9 459-467 475-483 (514)
272 PF11500 Cut12: Spindle pole b 35.9 3.2E+02 0.007 26.2 9.4 46 130-175 79-124 (152)
273 PRK03918 chromosome segregatio 35.7 4.3E+02 0.0092 30.3 12.0 26 159-184 196-221 (880)
274 PRK04863 mukB cell division pr 35.5 3.5E+02 0.0075 34.2 11.9 68 135-202 321-401 (1486)
275 KOG4797 Transcriptional regula 35.2 76 0.0016 29.3 4.9 28 156-183 67-94 (123)
276 cd07611 BAR_Amphiphysin_I_II T 35.1 1.6E+02 0.0036 29.4 7.6 56 150-205 112-171 (211)
277 PF06810 Phage_GP20: Phage min 35.1 2.1E+02 0.0045 27.0 8.0 49 155-203 26-81 (155)
278 KOG2264 Exostosin EXT1L [Signa 35.1 4.9E+02 0.011 30.4 11.9 45 156-200 93-137 (907)
279 COG4372 Uncharacterized protei 35.0 2.2E+02 0.0048 31.5 9.0 43 141-183 129-171 (499)
280 PF09744 Jnk-SapK_ap_N: JNK_SA 34.6 4.2E+02 0.0091 25.4 10.4 26 175-200 87-112 (158)
281 PRK04863 mukB cell division pr 34.4 3.7E+02 0.0081 34.0 11.9 49 155-203 375-423 (1486)
282 PF09730 BicD: Microtubule-ass 34.3 1.3E+02 0.0028 35.2 7.6 19 460-478 362-380 (717)
283 PF04728 LPP: Lipoprotein leuc 34.3 2.4E+02 0.0052 23.1 7.0 21 160-180 14-34 (56)
284 PF08537 NBP1: Fungal Nap bind 34.2 4.3E+02 0.0094 28.3 10.8 69 133-201 120-220 (323)
285 KOG0804 Cytoplasmic Zn-finger 34.2 3.2E+02 0.007 30.7 10.2 39 140-178 369-411 (493)
286 PF00261 Tropomyosin: Tropomyo 34.2 4.7E+02 0.01 25.8 11.7 48 155-202 168-215 (237)
287 PF05308 Mito_fiss_reg: Mitoch 34.1 57 0.0012 33.2 4.4 24 182-205 120-143 (253)
288 PRK14127 cell division protein 34.1 1.2E+02 0.0026 27.5 5.9 30 171-200 38-67 (109)
289 PF07558 Shugoshin_N: Shugoshi 34.1 40 0.00088 25.9 2.6 41 138-179 4-44 (46)
290 PF05667 DUF812: Protein of un 34.0 1.4E+02 0.0031 33.8 7.9 46 156-201 335-380 (594)
291 PF10883 DUF2681: Protein of u 33.8 1.5E+02 0.0034 25.9 6.4 37 166-202 26-64 (87)
292 PF01486 K-box: K-box region; 33.7 2.1E+02 0.0044 24.6 7.1 24 156-179 75-98 (100)
293 KOG4360 Uncharacterized coiled 33.7 4.7E+02 0.01 30.0 11.4 49 155-203 218-266 (596)
294 KOG0288 WD40 repeat protein Ti 33.6 2.2E+02 0.0047 31.6 8.8 25 155-179 47-71 (459)
295 PF05600 DUF773: Protein of un 33.6 1.8E+02 0.0039 32.4 8.4 50 153-202 443-492 (507)
296 COG2433 Uncharacterized conser 33.5 3.1E+02 0.0067 31.8 10.2 12 259-270 567-578 (652)
297 KOG0561 bHLH transcription fac 33.4 1.5E+02 0.0034 31.6 7.4 29 153-181 102-130 (373)
298 KOG0483 Transcription factor H 33.4 85 0.0018 31.0 5.3 36 168-203 110-145 (198)
299 KOG1029 Endocytic adaptor prot 33.4 3.6E+02 0.0078 32.5 10.8 14 302-315 623-636 (1118)
300 KOG1853 LIS1-interacting prote 33.3 1.7E+02 0.0037 30.8 7.5 20 160-179 56-75 (333)
301 PF11382 DUF3186: Protein of u 33.2 1.2E+02 0.0027 31.2 6.7 37 156-192 32-68 (308)
302 KOG2185 Predicted RNA-processi 33.2 1.6E+02 0.0034 32.7 7.6 64 142-205 399-472 (486)
303 PF04340 DUF484: Protein of un 33.1 1.4E+02 0.003 28.9 6.7 41 159-203 43-83 (225)
304 PF13935 Ead_Ea22: Ead/Ea22-li 33.1 2.6E+02 0.0056 25.7 8.1 6 32-37 16-21 (139)
305 PRK09343 prefoldin subunit bet 32.8 1.7E+02 0.0037 26.3 6.8 27 160-186 75-101 (121)
306 PF06465 DUF1087: Domain of Un 32.5 17 0.00037 30.4 0.4 15 35-50 45-59 (66)
307 PF14282 FlxA: FlxA-like prote 32.4 2E+02 0.0044 25.3 7.0 52 156-207 19-74 (106)
308 KOG0933 Structural maintenance 32.4 3.7E+02 0.008 33.0 10.9 46 158-203 817-862 (1174)
309 cd07429 Cby_like Chibby, a nuc 32.3 90 0.002 28.4 4.9 23 164-186 80-102 (108)
310 PRK15396 murein lipoprotein; P 32.2 3E+02 0.0064 23.7 7.7 44 157-200 26-69 (78)
311 PF07334 IFP_35_N: Interferon- 31.9 87 0.0019 27.0 4.5 18 166-183 3-20 (76)
312 COG1730 GIM5 Predicted prefold 31.4 2.5E+02 0.0054 26.6 7.8 29 172-200 110-138 (145)
313 PF08912 Rho_Binding: Rho Bind 31.4 2E+02 0.0044 24.4 6.4 32 161-192 1-32 (69)
314 PRK05431 seryl-tRNA synthetase 31.1 7E+02 0.015 27.0 12.1 37 167-203 70-106 (425)
315 PRK14161 heat shock protein Gr 31.0 2.1E+02 0.0046 27.8 7.5 22 156-177 33-54 (178)
316 PRK12705 hypothetical protein; 30.9 4.7E+02 0.01 29.4 11.0 14 465-478 428-441 (508)
317 PF07047 OPA3: Optic atrophy 3 30.7 1E+02 0.0022 28.2 5.0 20 156-175 112-131 (134)
318 cd07591 BAR_Rvs161p The Bin/Am 30.7 4.6E+02 0.0099 26.0 9.9 57 149-205 116-176 (224)
319 KOG4643 Uncharacterized coiled 30.7 3.6E+02 0.0077 33.2 10.4 62 135-196 373-434 (1195)
320 PF00769 ERM: Ezrin/radixin/mo 30.7 5.7E+02 0.012 25.7 10.7 27 178-204 83-109 (246)
321 KOG4661 Hsp27-ERE-TATA-binding 30.5 2.5E+02 0.0054 32.6 8.8 10 9-18 458-467 (940)
322 PRK03947 prefoldin subunit alp 30.5 2.2E+02 0.0048 25.5 7.1 14 164-177 109-122 (140)
323 PF09325 Vps5: Vps5 C terminal 30.3 4.5E+02 0.0097 24.9 9.5 56 134-189 127-189 (236)
324 cd07596 BAR_SNX The Bin/Amphip 30.2 2.9E+02 0.0063 25.3 8.0 23 156-178 145-167 (218)
325 PRK13922 rod shape-determining 30.2 3.4E+02 0.0073 27.0 9.0 32 172-203 71-105 (276)
326 PRK00736 hypothetical protein; 30.2 2.8E+02 0.0062 22.8 7.1 44 161-204 3-46 (68)
327 KOG0837 Transcriptional activa 30.1 1.8E+02 0.0038 30.5 7.1 61 147-210 207-267 (279)
328 KOG1318 Helix loop helix trans 30.1 2.2E+02 0.0048 31.3 8.2 33 154-186 288-320 (411)
329 PF13094 CENP-Q: CENP-Q, a CEN 30.0 2.3E+02 0.005 26.1 7.3 57 155-211 40-96 (160)
330 TIGR03185 DNA_S_dndD DNA sulfu 30.0 5.4E+02 0.012 29.0 11.5 48 156-203 421-468 (650)
331 TIGR00993 3a0901s04IAP86 chlor 29.9 2.3E+02 0.005 33.4 8.6 30 141-170 416-445 (763)
332 COG4372 Uncharacterized protei 29.9 7.2E+02 0.016 27.8 11.8 30 167-196 141-170 (499)
333 KOG0288 WD40 repeat protein Ti 29.8 5.3E+02 0.012 28.8 10.8 28 159-186 44-71 (459)
334 cd00632 Prefoldin_beta Prefold 29.8 2.6E+02 0.0057 24.1 7.2 39 158-203 65-103 (105)
335 KOG2010 Double stranded RNA bi 29.7 2.3E+02 0.0049 30.7 7.9 49 155-203 153-201 (405)
336 PRK10722 hypothetical protein; 29.7 1.9E+02 0.0042 29.8 7.2 62 133-196 142-209 (247)
337 cd07588 BAR_Amphiphysin The Bi 29.7 2.4E+02 0.0052 28.0 7.7 57 149-205 111-171 (211)
338 TIGR01242 26Sp45 26S proteasom 29.3 1.2E+02 0.0026 31.2 5.9 33 173-205 9-41 (364)
339 PF13851 GAS: Growth-arrest sp 29.3 5.5E+02 0.012 25.1 11.5 12 186-197 102-113 (201)
340 PF09730 BicD: Microtubule-ass 29.1 2E+02 0.0043 33.7 8.0 49 158-206 71-119 (717)
341 PF06428 Sec2p: GDP/GTP exchan 28.9 2.7E+02 0.0058 24.9 7.1 24 180-203 40-63 (100)
342 KOG2391 Vacuolar sorting prote 28.9 3.6E+02 0.0078 29.3 9.3 12 11-22 123-134 (365)
343 TIGR03689 pup_AAA proteasome A 28.8 1.3E+02 0.0029 33.5 6.4 38 168-205 6-43 (512)
344 KOG0971 Microtubule-associated 28.4 4.6E+02 0.01 32.1 10.7 29 174-202 329-357 (1243)
345 KOG0946 ER-Golgi vesicle-tethe 28.4 2E+02 0.0044 34.4 7.9 53 151-203 659-711 (970)
346 KOG0612 Rho-associated, coiled 28.2 5.4E+02 0.012 32.2 11.5 44 158-201 496-539 (1317)
347 PF05667 DUF812: Protein of un 28.2 2.6E+02 0.0057 31.9 8.7 8 33-40 230-237 (594)
348 PF12329 TMF_DNA_bd: TATA elem 28.1 2.5E+02 0.0055 23.4 6.5 38 163-200 33-70 (74)
349 PF12999 PRKCSH-like: Glucosid 28.1 4.7E+02 0.01 25.7 9.2 17 187-203 156-172 (176)
350 PF04012 PspA_IM30: PspA/IM30 28.0 4.5E+02 0.0097 25.2 9.2 44 158-201 100-143 (221)
351 PF14817 HAUS5: HAUS augmin-li 27.9 2.8E+02 0.0061 32.0 8.9 20 77-96 45-64 (632)
352 PF08172 CASP_C: CASP C termin 27.9 2.1E+02 0.0045 29.1 7.1 29 155-183 106-134 (248)
353 PF02388 FemAB: FemAB family; 27.7 2.7E+02 0.0058 29.7 8.2 24 155-178 241-264 (406)
354 PHA03011 hypothetical protein; 27.6 3.3E+02 0.0071 25.1 7.5 49 155-203 63-111 (120)
355 PF08606 Prp19: Prp19/Pso4-lik 27.4 3.8E+02 0.0081 22.9 7.4 30 158-187 10-39 (70)
356 TIGR03185 DNA_S_dndD DNA sulfu 27.4 7.3E+02 0.016 28.0 11.9 21 158-178 211-231 (650)
357 TIGR02231 conserved hypothetic 27.3 6.2E+02 0.014 27.6 11.1 43 165-207 126-168 (525)
358 cd07666 BAR_SNX7 The Bin/Amphi 27.2 3.6E+02 0.0078 27.5 8.6 57 137-203 151-207 (243)
359 KOG0996 Structural maintenance 27.2 5.2E+02 0.011 32.3 11.1 63 142-204 528-590 (1293)
360 PF13879 KIAA1430: KIAA1430 ho 27.1 3.3E+02 0.0071 22.5 7.2 18 184-201 80-97 (98)
361 KOG3650 Predicted coiled-coil 27.0 1.6E+02 0.0035 26.9 5.5 42 154-195 68-109 (120)
362 PF14775 NYD-SP28_assoc: Sperm 26.9 3.4E+02 0.0075 22.0 7.6 34 168-202 25-58 (60)
363 PF10252 PP28: Casein kinase s 26.8 47 0.001 28.9 2.1 17 8-24 51-67 (82)
364 COG4238 Murein lipoprotein [Ce 26.8 3.9E+02 0.0084 23.3 7.4 48 156-203 25-72 (78)
365 PF09738 DUF2051: Double stran 26.6 2.6E+02 0.0057 29.3 7.8 44 162-205 118-161 (302)
366 PRK14148 heat shock protein Gr 26.6 2.1E+02 0.0046 28.2 6.8 23 156-178 54-76 (195)
367 PF14932 HAUS-augmin3: HAUS au 26.6 4.3E+02 0.0092 26.6 9.0 14 230-243 162-175 (256)
368 TIGR02338 gimC_beta prefoldin, 26.4 3.1E+02 0.0067 24.0 7.1 26 159-184 70-95 (110)
369 PF07246 Phlebovirus_NSM: Phle 26.3 3.8E+02 0.0082 28.0 8.7 14 188-201 213-226 (264)
370 PRK10963 hypothetical protein; 26.2 2E+02 0.0043 28.2 6.5 12 171-182 69-80 (223)
371 PF06216 RTBV_P46: Rice tungro 26.1 2.6E+02 0.0056 29.5 7.5 35 416-453 341-375 (389)
372 cd00632 Prefoldin_beta Prefold 26.0 3.3E+02 0.0071 23.5 7.2 29 159-187 73-101 (105)
373 PF10481 CENP-F_N: Cenp-F N-te 26.0 5.5E+02 0.012 27.3 9.7 48 158-205 55-116 (307)
374 KOG0447 Dynamin-like GTP bindi 26.0 1.5E+02 0.0034 34.3 6.3 35 160-197 230-264 (980)
375 PRK02224 chromosome segregatio 25.7 6.8E+02 0.015 28.8 11.5 23 159-181 663-685 (880)
376 KOG0978 E3 ubiquitin ligase in 25.5 4.4E+02 0.0095 30.9 9.8 66 143-208 560-625 (698)
377 KOG2751 Beclin-like protein [S 25.4 5.4E+02 0.012 28.8 10.0 60 145-204 153-217 (447)
378 PF06632 XRCC4: DNA double-str 25.4 2.7E+02 0.0059 29.6 7.7 29 159-187 147-175 (342)
379 PF01763 Herpes_UL6: Herpesvir 25.4 2.3E+02 0.005 32.3 7.5 44 156-199 363-406 (557)
380 KOG0239 Kinesin (KAR3 subfamil 25.3 4.1E+02 0.0089 30.8 9.6 16 191-206 300-315 (670)
381 PF09728 Taxilin: Myosin-like 25.2 8E+02 0.017 25.6 11.0 52 154-205 48-99 (309)
382 PF15030 DUF4527: Protein of u 25.1 5.3E+02 0.012 27.0 9.4 38 151-188 53-90 (277)
383 PRK14143 heat shock protein Gr 25.1 2E+02 0.0043 29.2 6.4 26 155-180 80-105 (238)
384 TIGR01554 major_cap_HK97 phage 25.0 4E+02 0.0086 27.7 8.8 24 157-180 35-58 (378)
385 KOG0161 Myosin class II heavy 25.0 6.1E+02 0.013 33.2 11.6 29 175-203 1503-1531(1930)
386 PF07798 DUF1640: Protein of u 25.0 3.1E+02 0.0067 25.9 7.4 47 159-205 47-94 (177)
387 PF10146 zf-C4H2: Zinc finger- 24.9 7.3E+02 0.016 25.1 12.6 42 158-199 62-103 (230)
388 PF12808 Mto2_bdg: Micro-tubul 24.8 2.6E+02 0.0057 22.5 5.7 25 159-183 25-49 (52)
389 PF04201 TPD52: Tumour protein 24.8 3.6E+02 0.0078 26.3 7.7 7 126-132 25-31 (162)
390 KOG0243 Kinesin-like protein [ 24.7 6.6E+02 0.014 30.9 11.3 71 132-202 407-494 (1041)
391 PRK13923 putative spore coat p 24.7 2.9E+02 0.0064 27.0 7.2 38 155-192 110-147 (170)
392 PF07200 Mod_r: Modifier of ru 24.7 3.9E+02 0.0084 24.1 7.7 49 140-189 40-88 (150)
393 PF03670 UPF0184: Uncharacteri 24.6 2.7E+02 0.0058 24.4 6.2 36 157-192 34-69 (83)
394 KOG0933 Structural maintenance 24.5 6.9E+02 0.015 30.9 11.3 44 163-206 815-858 (1174)
395 PRK05431 seryl-tRNA synthetase 24.4 4.6E+02 0.0099 28.4 9.3 35 172-206 68-102 (425)
396 COG2919 Septum formation initi 24.4 5.2E+02 0.011 23.1 10.1 33 174-206 54-86 (117)
397 PF09728 Taxilin: Myosin-like 24.3 5.4E+02 0.012 26.8 9.5 37 156-192 244-280 (309)
398 PF11690 DUF3287: Protein of u 24.2 2.3E+02 0.005 25.9 6.0 38 155-192 41-80 (109)
399 PF15070 GOLGA2L5: Putative go 24.1 5.5E+02 0.012 29.5 10.3 54 152-205 11-64 (617)
400 PF13600 DUF4140: N-terminal d 24.1 2E+02 0.0044 24.4 5.5 14 160-173 74-87 (104)
401 TIGR00606 rad50 rad50. This fa 24.1 6.3E+02 0.014 31.1 11.4 14 148-161 849-862 (1311)
402 cd00890 Prefoldin Prefoldin is 24.0 3.6E+02 0.0078 23.2 7.1 14 162-175 100-113 (129)
403 PRK06569 F0F1 ATP synthase sub 24.0 6.5E+02 0.014 24.1 10.7 46 133-178 39-84 (155)
404 TIGR01242 26Sp45 26S proteasom 23.9 1.7E+02 0.0037 30.1 5.9 40 160-199 3-42 (364)
405 COG1382 GimC Prefoldin, chaper 23.8 3.6E+02 0.0079 25.0 7.3 29 175-203 75-103 (119)
406 PF09486 HrpB7: Bacterial type 23.7 3.9E+02 0.0084 25.7 7.7 46 155-200 78-123 (158)
407 PF07795 DUF1635: Protein of u 23.7 4.8E+02 0.01 26.4 8.6 40 140-179 17-56 (214)
408 KOG0239 Kinesin (KAR3 subfamil 23.6 8.4E+02 0.018 28.4 11.6 29 158-186 243-271 (670)
409 PF06210 DUF1003: Protein of u 23.5 4.3E+02 0.0092 23.8 7.5 46 142-192 57-102 (108)
410 PF10234 Cluap1: Clusterin-ass 23.5 8.5E+02 0.018 25.3 11.6 54 151-204 178-238 (267)
411 cd07667 BAR_SNX30 The Bin/Amph 23.5 4.3E+02 0.0093 27.0 8.4 50 150-202 154-203 (240)
412 cd07612 BAR_Bin2 The Bin/Amphi 23.4 4.7E+02 0.01 26.3 8.5 55 151-205 113-171 (211)
413 KOG2077 JNK/SAPK-associated pr 23.3 2.2E+02 0.0047 33.0 6.8 47 156-202 329-375 (832)
414 PF13942 Lipoprotein_20: YfhG 23.2 3.8E+02 0.0082 26.6 7.6 50 145-196 114-163 (179)
415 KOG4360 Uncharacterized coiled 23.1 3.4E+02 0.0073 31.0 8.1 50 154-203 196-245 (596)
416 PRK11239 hypothetical protein; 23.1 1.3E+02 0.0029 30.3 4.7 26 159-184 186-211 (215)
417 PF09789 DUF2353: Uncharacteri 23.0 8.6E+02 0.019 26.0 10.7 63 144-206 18-101 (319)
418 KOG1029 Endocytic adaptor prot 22.9 4.8E+02 0.01 31.5 9.5 12 391-402 859-870 (1118)
419 PF15030 DUF4527: Protein of u 22.8 8.5E+02 0.018 25.6 10.3 24 284-311 160-184 (277)
420 PF10168 Nup88: Nuclear pore c 22.7 8.5E+02 0.018 28.5 11.5 29 158-186 581-609 (717)
421 PF09325 Vps5: Vps5 C terminal 22.7 5.9E+02 0.013 24.1 8.8 25 155-179 162-186 (236)
422 KOG0993 Rab5 GTPase effector R 22.6 3.8E+02 0.0082 30.0 8.2 48 156-203 134-181 (542)
423 PRK11546 zraP zinc resistance 22.4 3.2E+02 0.007 25.9 6.8 24 127-153 44-67 (143)
424 KOG0709 CREB/ATF family transc 22.4 2.2E+02 0.0048 31.8 6.5 25 179-203 274-298 (472)
425 KOG4001 Axonemal dynein light 22.3 2.7E+02 0.0059 28.4 6.6 57 146-202 171-231 (259)
426 PF05300 DUF737: Protein of un 22.1 3.2E+02 0.0069 26.9 7.0 29 173-201 144-172 (187)
427 KOG1924 RhoA GTPase effector D 22.1 8.9E+02 0.019 29.5 11.4 46 113-163 440-485 (1102)
428 PF07407 Seadorna_VP6: Seadorn 22.0 2.7E+02 0.0059 30.2 6.9 12 157-168 47-58 (420)
429 PRK06835 DNA replication prote 22.0 4.2E+02 0.009 27.8 8.2 48 157-204 37-85 (329)
430 PF07058 Myosin_HC-like: Myosi 21.9 1.5E+02 0.0033 31.7 5.0 24 450-474 320-346 (351)
431 COG4345 Uncharacterized protei 21.8 3.3E+02 0.0071 27.0 6.8 33 159-191 121-153 (181)
432 KOG0994 Extracellular matrix g 21.8 3.6E+02 0.0077 33.9 8.4 81 127-207 1203-1297(1758)
433 COG2919 Septum formation initi 21.8 3.5E+02 0.0077 24.2 6.7 60 133-192 19-86 (117)
434 KOG2891 Surface glycoprotein [ 21.7 6.8E+02 0.015 26.9 9.6 17 148-164 354-370 (445)
435 PF09304 Cortex-I_coil: Cortex 21.7 6.3E+02 0.014 23.2 11.4 54 151-204 11-64 (107)
436 PRK09413 IS2 repressor TnpA; R 21.5 2.1E+02 0.0046 25.2 5.3 33 169-201 70-102 (121)
437 KOG0995 Centromere-associated 21.5 5.5E+02 0.012 29.5 9.4 18 186-203 334-351 (581)
438 TIGR00414 serS seryl-tRNA synt 21.4 5E+02 0.011 28.0 8.9 38 166-203 72-109 (418)
439 PF05911 DUF869: Plant protein 21.4 4E+02 0.0087 31.5 8.7 38 150-187 128-165 (769)
440 COG5509 Uncharacterized small 21.3 2.1E+02 0.0046 24.0 4.7 22 158-179 27-48 (65)
441 COG5185 HEC1 Protein involved 21.3 7.9E+02 0.017 28.1 10.4 43 160-202 320-362 (622)
442 KOG0249 LAR-interacting protei 21.3 8.2E+02 0.018 29.3 10.8 41 165-205 218-258 (916)
443 PF04201 TPD52: Tumour protein 21.3 2.9E+02 0.0063 26.9 6.4 39 164-202 37-80 (162)
444 PF07047 OPA3: Optic atrophy 3 21.2 1.7E+02 0.0038 26.7 4.7 25 158-182 107-131 (134)
445 PF05008 V-SNARE: Vesicle tran 21.2 3.5E+02 0.0076 21.8 6.1 45 156-200 32-77 (79)
446 PF12777 MT: Microtubule-bindi 21.1 4E+02 0.0087 27.7 7.9 47 158-204 230-276 (344)
447 PF13870 DUF4201: Domain of un 21.1 3E+02 0.0065 25.7 6.4 54 155-208 90-143 (177)
448 cd07429 Cby_like Chibby, a nuc 20.9 2.5E+02 0.0054 25.6 5.5 14 190-203 85-98 (108)
449 KOG3863 bZIP transcription fac 20.9 2.1E+02 0.0046 32.9 6.2 46 164-209 512-557 (604)
450 PF14645 Chibby: Chibby family 20.9 2.3E+02 0.005 25.7 5.4 28 173-200 74-101 (116)
451 PF02841 GBP_C: Guanylate-bind 20.8 8.9E+02 0.019 24.6 10.5 23 158-180 231-253 (297)
452 PF08961 DUF1875: Domain of un 20.7 33 0.00071 34.9 0.0 44 160-203 119-162 (243)
453 KOG0982 Centrosomal protein Nu 20.7 7.8E+02 0.017 27.7 10.1 49 153-203 282-330 (502)
454 PF10168 Nup88: Nuclear pore c 20.7 9.8E+02 0.021 28.0 11.5 43 163-205 579-621 (717)
455 PF10174 Cast: RIM-binding pro 20.6 3.6E+02 0.0077 31.9 8.1 65 139-203 283-348 (775)
456 PRK10636 putative ABC transpor 20.6 4.2E+02 0.0092 29.8 8.5 25 155-179 562-586 (638)
457 TIGR03689 pup_AAA proteasome A 20.6 2.4E+02 0.0051 31.6 6.4 44 158-201 3-46 (512)
458 KOG3910 Helix loop helix trans 20.5 7.1E+02 0.015 28.6 9.8 13 191-203 573-585 (632)
459 PF04012 PspA_IM30: PspA/IM30 20.2 7.7E+02 0.017 23.6 10.5 46 160-205 95-140 (221)
460 PRK11147 ABC transporter ATPas 20.2 3.1E+02 0.0068 30.7 7.3 46 158-203 570-621 (635)
461 TIGR02338 gimC_beta prefoldin, 20.2 2.9E+02 0.0062 24.2 5.7 27 161-187 79-105 (110)
No 1
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=99.56 E-value=1.9e-15 Score=158.05 Aligned_cols=112 Identities=27% Similarity=0.399 Sum_probs=89.5
Q ss_pred CCch-hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 126 NLTE-AEKEERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 126 ~lt~-eEkEeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
.+|+ +|+..||.||+|||++|||+||+|||+|++.||.+|..+..||++|+++++. |+.+|+.|-+||.+|+
T Consensus 241 PLTKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~-------Le~~N~sLl~qL~klQ 313 (472)
T KOG0709|consen 241 PLTKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEE-------LELSNRSLLAQLKKLQ 313 (472)
T ss_pred CchHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHH-------HhhccHHHHHHHHHHH
Confidence 3566 6779999999999999999999999999999999999999999988766655 6789999999999998
Q ss_pred ccccccccccccccccccCCCCcccceeecccccccccc--ccccccCCCCCC
Q 011345 205 KSEVGETQGEVKLAHAEMSSSPTNCPLLLYNHHALTPLG--WPSIIQSSQPVP 255 (488)
Q Consensus 205 a~~~~~~~a~~k~a~~~~spspat~p~ll~n~~pf~~l~--~~s~~qs~~~~~ 255 (488)
..+....+ .++++++|.++|. ..|+++. -|+|..+..|.+
T Consensus 314 t~v~q~an---------~s~qt~tC~av~~--lS~~l~~s~lp~~~~~~~p~~ 355 (472)
T KOG0709|consen 314 TLVIQVAN---------KSTQTSTCLAVLL--LSFCLLLSTLPCFSEFSQPIT 355 (472)
T ss_pred HHHhhccc---------chhccchhHHHHH--HHHHHHHhhcccccccCCCCc
Confidence 76665433 3578999998765 4555555 566655444433
No 2
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.31 E-value=9.3e-12 Score=122.26 Aligned_cols=85 Identities=29% Similarity=0.338 Sum_probs=80.6
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 119 AGGRSRQNLTEAEKEERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKA 198 (488)
Q Consensus 119 ~~gRkR~~lt~eEkEeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRa 198 (488)
.+.|||.+|++..-|+|-+||++|||.+||.+|.|||++++++|.++..|+.||+.|+.++..|+...+.|..+|.+|..
T Consensus 53 ~~~rKr~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~ 132 (292)
T KOG4005|consen 53 QPKRKRRRLDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDS 132 (292)
T ss_pred chHHHHHhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 45688999999888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 011345 199 QVAKV 203 (488)
Q Consensus 199 qL~kL 203 (488)
.|..+
T Consensus 133 ~le~~ 137 (292)
T KOG4005|consen 133 ELELL 137 (292)
T ss_pred HHHHH
Confidence 98854
No 3
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.30 E-value=1.3e-11 Score=97.41 Aligned_cols=63 Identities=46% Similarity=0.571 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 131 EKEERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETIN 193 (488)
Q Consensus 131 EkEeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN 193 (488)
|++.++.+|+++||+||+++|.||+.|+++||.+|..|+.+|..|+.++..|..++..|..+|
T Consensus 1 e~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 1 EKEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467889999999999999999999999999999999999999999999999999888888887
No 4
>smart00338 BRLZ basic region leucin zipper.
Probab=99.30 E-value=1.4e-11 Score=97.32 Aligned_cols=62 Identities=40% Similarity=0.494 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 132 KEERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETIN 193 (488)
Q Consensus 132 kEeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN 193 (488)
+++|+.+|+++||+||++||.||++|+.+||.+|..|+.+|..|..++..|..++..|..+|
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36799999999999999999999999999999999999999999999988877666665554
No 5
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.25 E-value=9.8e-12 Score=132.29 Aligned_cols=70 Identities=30% Similarity=0.368 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 130 AEKEERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQ 199 (488)
Q Consensus 130 eEkEeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaq 199 (488)
+.+..||+.|||||||||..||+|||+|+..||.++..|.+||+.|++|+..|++++..|+.||..|+--
T Consensus 276 d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvp 345 (655)
T KOG4343|consen 276 DIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKVP 345 (655)
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccC
Confidence 5679999999999999999999999999999999999999999999999999999999999999988653
No 6
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.10 E-value=2.2e-10 Score=115.20 Aligned_cols=57 Identities=28% Similarity=0.434 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 130 AEKEERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEY 186 (488)
Q Consensus 130 eEkEeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~ 186 (488)
+|.-.||+-|++||||+||++|+|||+|+.+||.+|+.|+.+|..|-.|+..|++-|
T Consensus 286 ee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLY 342 (348)
T KOG3584|consen 286 EEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELY 342 (348)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHh
Confidence 666899999999999999999999999999999999999999999988888876543
No 7
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=98.87 E-value=1.3e-08 Score=78.41 Aligned_cols=51 Identities=37% Similarity=0.517 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 133 EERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVK 184 (488)
Q Consensus 133 EeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~q 184 (488)
++++.+|+ +||+||++||.||++++.+|+.+|..|+.+|..|..++..|..
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56777777 9999999999999999999999999999999999888888765
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.03 E-value=9.8e-08 Score=80.79 Aligned_cols=65 Identities=32% Similarity=0.346 Sum_probs=52.0
Q ss_pred Cchhh-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 127 LTEAE-KEERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLET 191 (488)
Q Consensus 127 lt~eE-kEeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~Les 191 (488)
++.++ ...|.+||.++||.+|+.||.||..++++||.++..|..+...|..++..+..++..+..
T Consensus 21 lt~~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~ 86 (92)
T PF03131_consen 21 LTEEQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKR 86 (92)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56644 578999999999999999999999999999999998888887777777666554444333
No 9
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.55 E-value=0.00064 Score=69.22 Aligned_cols=63 Identities=21% Similarity=0.210 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 134 ERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 134 eKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
.+..|..+.|+.+|.|-|+||++..+.|+.+...|+.+|++|+.++..|.+ |-+.||+-|-..
T Consensus 226 ~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~ler-------EI~ylKqli~e~ 288 (294)
T KOG4571|consen 226 KKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELER-------EIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 333344567777899999999999999999999999999999888877655 566666655443
No 10
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.48 E-value=0.00044 Score=69.59 Aligned_cols=52 Identities=23% Similarity=0.195 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 133 EERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVK 184 (488)
Q Consensus 133 EeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~q 184 (488)
..|-.|..++||++|.+||+||-+++..||.+|..|..+|..|..++..|.+
T Consensus 204 ~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~ 255 (279)
T KOG0837|consen 204 KIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKE 255 (279)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH
Confidence 3444555789999999999999999999999999999999988777666544
No 11
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=97.10 E-value=0.0064 Score=60.94 Aligned_cols=65 Identities=25% Similarity=0.316 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 132 KEERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 132 kEeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
++.+-..|+-+|=++|++||.+++...+++..+|..|+.||+.|+.+++.|++ |+..|+.-+..+
T Consensus 191 ~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~-------el~~~~~~~~~~ 255 (269)
T KOG3119|consen 191 KDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKK-------ELATLRRLFLQL 255 (269)
T ss_pred CCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhh
Confidence 34455555668999999999999999999999999999999999888887655 666666666554
No 12
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.05 E-value=0.0068 Score=55.85 Aligned_cols=73 Identities=26% Similarity=0.265 Sum_probs=55.4
Q ss_pred CchhhH-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 127 LTEAEK-EERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 127 lt~eEk-EeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
++.+|- ..|..||-+|||=.|+-+|-|+-..-++||.+-..|..+.+.|+.++..+.. |-..|+....+|+.
T Consensus 44 ~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~-------E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 44 LSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRR-------ELDAYKSKYEALQN 116 (135)
T ss_pred CCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Confidence 444443 7788889999999999999999999999988877777777766666666554 55556667777765
Q ss_pred c
Q 011345 206 S 206 (488)
Q Consensus 206 ~ 206 (488)
.
T Consensus 117 ~ 117 (135)
T KOG4196|consen 117 S 117 (135)
T ss_pred h
Confidence 3
No 13
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=96.18 E-value=0.01 Score=65.73 Aligned_cols=65 Identities=20% Similarity=0.186 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 133 EERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLK 197 (488)
Q Consensus 133 EeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LR 197 (488)
-.|-+||+=|||.+||++|+||-.-+-.||.+|..|+.+-++|.++-..+.+.+..+..+-..|-
T Consensus 488 lIrDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L~ 552 (604)
T KOG3863|consen 488 LIRDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSELY 552 (604)
T ss_pred HhhccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788899999999999999999999999998888888776666555544444444444443
No 14
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=94.98 E-value=0.12 Score=45.89 Aligned_cols=50 Identities=22% Similarity=0.349 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
..+.+||.++..|..+...|+.++..|.+++..|..||..||.+|.++..
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999999999999999999999999865
No 15
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=94.80 E-value=0.14 Score=45.84 Aligned_cols=49 Identities=18% Similarity=0.256 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
..+..||.++..+..+...|+..+..|.+++..|..||..||..|.++.
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3578899999999999999999999999999999999999999999873
No 16
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=94.77 E-value=0.21 Score=41.66 Aligned_cols=49 Identities=22% Similarity=0.234 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
+.++.||.+|..+-.....|+.++..|++++..|..+|..|+.+..+|.
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4567888888887777777777777777777777777777766666664
No 17
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.68 E-value=1 Score=42.80 Aligned_cols=76 Identities=18% Similarity=0.230 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 011345 133 EERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMKSEV 208 (488)
Q Consensus 133 EeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a~~~ 208 (488)
..++++.+...+..-+.-.......+.+++.-+..|..|...|.-++..+.+++..|+.||..|-++..+..+.++
T Consensus 114 ~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eA 189 (194)
T PF08614_consen 114 KERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQEA 189 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666667777777777788889999999999999999999999999999999999999999999888766544
No 18
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=93.67 E-value=0.49 Score=51.65 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
...++||.+++.|+.|.+.|.++...++++++.|+.||+.|++|+..+
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 456899999999999999999999999999999999999999999543
No 19
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.41 E-value=1 Score=44.00 Aligned_cols=72 Identities=17% Similarity=0.143 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 130 AEKEERRVCRILANRE-SARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVA 201 (488)
Q Consensus 130 eEkEeKR~RRkiKNRE-SArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~ 201 (488)
.|++....+-.+.|-. .+.......+..++.++..+..|+.+|..|++++..++.+.+.|+.+|..++..+.
T Consensus 98 le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 98 LENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444322 22333333445555666677777777777777777777777777777777766553
No 20
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=93.16 E-value=0.0069 Score=63.48 Aligned_cols=64 Identities=23% Similarity=0.251 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 130 AEKEERRVCRILANRESARQ---TIRRRQALCEELTRKAADLS-QENESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 130 eEkEeKR~RRkiKNRESArR---SR~RKQeyveELE~kV~~Le-~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
.|.+.|+..|+.+|+.+|.+ +|.|++.+..+|..+|+.|+ .+|..|..++..|+ .++..|...+
T Consensus 149 ~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lq-------ne~~~l~~~l 216 (395)
T KOG1414|consen 149 PEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQ-------NEADHLEKEL 216 (395)
T ss_pred CcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccc-------cHHHHHHHHH
Confidence 66799999999999999999 99999999999999999999 88888766666654 4555555544
No 21
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=91.46 E-value=2.2 Score=43.45 Aligned_cols=90 Identities=19% Similarity=0.232 Sum_probs=65.7
Q ss_pred ccCCCCCCCCCCCchhhHHH-HHHHHHHHhhHH--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 115 YISMAGGRSRQNLTEAEKEE-RRVCRILANRES--ARQTIRRRQAL-CEELTRKAADLSQENESLKREKELAVKEYQSLE 190 (488)
Q Consensus 115 s~s~~~gRkR~~lt~eEkEe-KR~RRkiKNRES--ArRSR~RKQey-veELE~kV~~Le~EN~~Lkkel~~L~qe~~~Le 190 (488)
|....-.++=..|+.+||.. |+++-++.---+ -.+.|+-+-+| |.+|+.+-+.|..||+.|+.....|.-+.++|.
T Consensus 52 s~~~rKr~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~ 131 (292)
T KOG4005|consen 52 SQPKRKRRRLDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELD 131 (292)
T ss_pred cchHHHHHhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34455667777899999844 455533332211 12334444444 679999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 011345 191 TINKHLKAQVAKVM 204 (488)
Q Consensus 191 sEN~~LRaqL~kL~ 204 (488)
.+--.|++.|..+-
T Consensus 132 ~~le~~~~~l~~~~ 145 (292)
T KOG4005|consen 132 SELELLRQELAELK 145 (292)
T ss_pred HHHHHHHHHHHhhH
Confidence 99888888888763
No 22
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=90.56 E-value=5.2 Score=34.51 Aligned_cols=75 Identities=19% Similarity=0.215 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 130 AEKEERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 130 eEkEeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
.+...+|+.+.|.+=+++=..|.-+.....+|+.++..|.....+|-.++.....++..|+.-|..+...|...+
T Consensus 6 le~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~ 80 (89)
T PF13747_consen 6 LEAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAI 80 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888999999999999888888888889999999999999999999999999999999999999999887654
No 23
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=90.55 E-value=1.1 Score=40.75 Aligned_cols=47 Identities=21% Similarity=0.245 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
..+..||.++..+-.+...|++.+..|.+++..|.-||..||.+|..
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 45788999999999999999999999999999999999999999977
No 24
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=90.47 E-value=1.4 Score=42.17 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 165 AADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 165 V~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
...+..||..|+.++..|++++..|+.+|..|..++..+
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~ 137 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTI 137 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777777777777777777777776665544
No 25
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=90.29 E-value=2.7 Score=36.03 Aligned_cols=47 Identities=28% Similarity=0.365 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 159 EELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
++|..++..|+.....|..++...+.++..|..||..|..=|..|+.
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777888899999999999999999999999999999999999975
No 26
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.25 E-value=0.98 Score=34.68 Aligned_cols=39 Identities=28% Similarity=0.456 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 167 DLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 167 ~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
+|+.+-..|+.....|..++..|..||..|++++..|.+
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777777777888888899999999888754
No 27
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=90.02 E-value=1.4 Score=36.48 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 159 EELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
..|+.+|..|-...+.|+.++..|..+...+..|+..|.++.
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekn 44 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKN 44 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555554443
No 28
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.60 E-value=5.3 Score=39.20 Aligned_cols=56 Identities=13% Similarity=0.056 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 150 TIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 150 SR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
-+..-++...+|+.+++....+...|..++..|.+++..+..+|..|++++..+..
T Consensus 112 ~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 112 IDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444577778888888888888889999999999999999999988888888764
No 29
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.69 E-value=1.4 Score=37.48 Aligned_cols=45 Identities=27% Similarity=0.316 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVA 201 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~ 201 (488)
-+.=|.-+|+.|+.+|+.|..+...++...+.|+.+|..|+++-.
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~ 63 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888888888888888888888888888888877643
No 30
>PRK02119 hypothetical protein; Provisional
Probab=88.58 E-value=3.8 Score=34.17 Aligned_cols=50 Identities=12% Similarity=0.001 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 155 QALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
.+++.+||.+++-.+.-.+.|...+..-++++..|..+.+.|..++..+.
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35789999999999999999999999999999999999999999998764
No 31
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=88.58 E-value=2.4 Score=34.70 Aligned_cols=49 Identities=18% Similarity=0.126 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
+.+++||.+++-++.-.+.|...+...++++..|+.+.+.|..+|..+.
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999998875
No 32
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=88.44 E-value=1.1 Score=45.50 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 011345 164 KAADLSQENESLKREKELAVKEYQ----SLETINKHLKAQV 200 (488)
Q Consensus 164 kV~~Le~EN~~Lkkel~~L~qe~~----~LesEN~~LRaqL 200 (488)
.+..|.+||++|++++..|.++++ .++.||.+||+.|
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677888888888766644444 4888999999866
No 33
>PRK04406 hypothetical protein; Provisional
Probab=87.82 E-value=4.4 Score=34.03 Aligned_cols=49 Identities=14% Similarity=0.017 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
+++.+||.+++-++.-.+.|...+...++++..|..+-+.|..++..+.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4688999999999999999999999999999999999998988887764
No 34
>PRK02793 phi X174 lysis protein; Provisional
Probab=87.19 E-value=5.3 Score=33.20 Aligned_cols=49 Identities=18% Similarity=0.047 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
+++.+||.+++-.+.-.+.|...+...++++..|..+-+.|..++..+.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5789999999999999999999999999999999999999999888764
No 35
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=86.93 E-value=11 Score=34.28 Aligned_cols=65 Identities=25% Similarity=0.257 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 133 EERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLK 197 (488)
Q Consensus 133 EeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LR 197 (488)
-..+..|=...|+.......+....++.|+..+..|+.+++.+.+++..+..+...+..+++.+.
T Consensus 43 Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~ 107 (151)
T PF11559_consen 43 LLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLE 107 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777888888888888888888888888888777777776665555555554444443
No 36
>PRK00295 hypothetical protein; Provisional
Probab=86.29 E-value=7.1 Score=32.11 Aligned_cols=49 Identities=12% Similarity=0.042 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
+.+++||.+++-.+.-.+.|...+...++++..|..+-+.|..++..+.
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3489999999999999999999999999999999999999999888764
No 37
>PRK00846 hypothetical protein; Provisional
Probab=86.18 E-value=6.2 Score=33.67 Aligned_cols=50 Identities=20% Similarity=0.070 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 155 QALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
.+++++||.+++-.+.-.+.|...+...++.+..|..+-+.|..+|..+.
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36789999999999999999999999999999999999999999998875
No 38
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=85.67 E-value=4.8 Score=40.95 Aligned_cols=51 Identities=27% Similarity=0.315 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 155 QALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
++.++++..+...|..+|.+|..+++.++.++..|+.||..|...+.+|-+
T Consensus 141 kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ 191 (290)
T COG4026 141 KEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPG 191 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 444566666667777777777777888888888999999999988888754
No 39
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=85.65 E-value=6.1 Score=33.05 Aligned_cols=35 Identities=34% Similarity=0.377 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 165 AADLSQENESLKREKELAVKEYQSLETINKHLKAQ 199 (488)
Q Consensus 165 V~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaq 199 (488)
+..|+.+|..|+.++..|.++...|..+|..|+++
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444433
No 40
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=85.44 E-value=3.8 Score=36.56 Aligned_cols=50 Identities=24% Similarity=0.173 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 011345 160 ELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMKSEVG 209 (488)
Q Consensus 160 ELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a~~~~ 209 (488)
+|=.++..|+.....|..+++.|+..+..|..||..|+.+-.+|......
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678899999999999999999999999999999999988888654433
No 41
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=84.74 E-value=7.1 Score=39.01 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 154 RQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVA 201 (488)
Q Consensus 154 KQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~ 201 (488)
.++.+++...+.+.++.++..|+++.+.+.+++..|..+|..|+.++.
T Consensus 163 L~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 163 LETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 344445555556666667777888888888888888888888888774
No 42
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=84.20 E-value=7.6 Score=32.26 Aligned_cols=50 Identities=22% Similarity=0.240 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
+.++.|=.....|+.||..|+.++..+..+-..|...|..=+.+|..+..
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~ 56 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMIT 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888889999999999999999999999999999888888877753
No 43
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=84.15 E-value=7.3 Score=44.51 Aligned_cols=41 Identities=22% Similarity=0.315 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKA 198 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRa 198 (488)
.+-+..+..+|+.|..+|+.++...++++..|+.+.+.|+.
T Consensus 540 ~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 540 AESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466677777777777777777777777777776665554
No 44
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=83.91 E-value=7.1 Score=38.65 Aligned_cols=37 Identities=35% Similarity=0.363 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 011345 165 AADLSQENESLKREKELAVKEYQ---SLETINKHLKAQVA 201 (488)
Q Consensus 165 V~~Le~EN~~Lkkel~~L~qe~~---~LesEN~~LRaqL~ 201 (488)
...+.+||.+|++|+..|+.+.. .+..||.+|++.|.
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555555555555554444 67889999988763
No 45
>PF15058 Speriolin_N: Speriolin N terminus
Probab=83.81 E-value=2.5 Score=41.71 Aligned_cols=39 Identities=31% Similarity=0.366 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
.+.|..+++.|-.||++||++++.++ ||..||.-|.+-+
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLir--------EN~eLksaL~ea~ 45 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLIR--------ENHELKSALGEAC 45 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHH--------HHHHHHHHHHHhh
Confidence 46788899999999999999998664 8888888766543
No 46
>PRK00736 hypothetical protein; Provisional
Probab=83.32 E-value=10 Score=31.16 Aligned_cols=49 Identities=14% Similarity=0.099 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
+++++||.+++-.+.-.+.|...+..-++++..|..+-+.|..++..+.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4589999999999999999999999999999999999999988887753
No 47
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=83.30 E-value=23 Score=33.25 Aligned_cols=74 Identities=20% Similarity=0.202 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 130 AEKEERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 130 eEkEeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
.+.-+|-......|++.+-.--.-.++.+..|+.++..+..+...|..++..+.++...|..+-...+.++..|
T Consensus 26 v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eL 99 (140)
T PF10473_consen 26 VESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSEL 99 (140)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666667777777777777777777777777777777776666666666555555555544444444444
No 48
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=83.18 E-value=5.1 Score=34.52 Aligned_cols=45 Identities=31% Similarity=0.350 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
+.=|.-+|+.|+.+|..|..++..+......|+.+|..|+++-..
T Consensus 20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~ 64 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG 64 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666555566677777777765543
No 49
>PRK04325 hypothetical protein; Provisional
Probab=83.00 E-value=8.2 Score=32.24 Aligned_cols=49 Identities=14% Similarity=0.011 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
+++++||.+++-.+.-.+.|...+..-++++..|..+-+.|..++..+.
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3489999999999999999999999999999999999888888887764
No 50
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=82.21 E-value=4.4 Score=45.31 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011345 173 ESLKREKELAVKEYQSLETINKHLKAQVAKVMKS 206 (488)
Q Consensus 173 ~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a~ 206 (488)
..|..++..|.++++.|..||..||.||..+...
T Consensus 305 ~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~E 338 (655)
T KOG4343|consen 305 LGLEARLQALLSENEQLKKENATLKRQLDELVSE 338 (655)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 4578889999999999999999999999998653
No 51
>PRK11637 AmiB activator; Provisional
Probab=81.97 E-value=18 Score=38.17 Aligned_cols=59 Identities=14% Similarity=0.045 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 147 ARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 147 ArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
.+.....-...++.|+.++..++.+...+..++..+.+++..++.+-..|+.++..+..
T Consensus 66 ~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 66 QQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445556666666666666666666666666666666666666666666655543
No 52
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=81.88 E-value=10 Score=31.53 Aligned_cols=48 Identities=27% Similarity=0.316 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
..++-|..++.....+|..|..+-.....++..+-.+|..|++++..|
T Consensus 12 ~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L 59 (69)
T PF14197_consen 12 NRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEAL 59 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666665444444444444444444444433
No 53
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=81.55 E-value=12 Score=34.10 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 160 ELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 160 ELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
.|+.+++.++.++..+..+...+..++..+...++.++.++.+
T Consensus 77 rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~k 119 (151)
T PF11559_consen 77 RLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQK 119 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333
No 54
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=81.14 E-value=7.3 Score=35.14 Aligned_cols=47 Identities=23% Similarity=0.188 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011345 160 ELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMKS 206 (488)
Q Consensus 160 ELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a~ 206 (488)
+|=.++..|+.....|..+++.|++.+..|..||..|+.+-..|...
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~ 51 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRER 51 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888889999999999999999999999998887666543
No 55
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=81.10 E-value=6.7 Score=42.19 Aligned_cols=99 Identities=18% Similarity=0.177 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc-cccccccccC
Q 011345 145 ESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMKSEVGETQG-EVKLAHAEMS 223 (488)
Q Consensus 145 ESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a~~~~~~~a-~~k~a~~~~s 223 (488)
++|.--|.|--+--...|..++.+..|.+.|+.+++.+.++...|..||..|+.-+..|-+...--.+. ..+ +-+.++
T Consensus 227 ee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~pNeqLk-~pvtvs 305 (561)
T KOG1103|consen 227 EEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRPNEQLK-GPVTVS 305 (561)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcccccc-Cceeec
Confidence 455555666555555566667777777788888888888888888888888887777665443332222 222 222345
Q ss_pred CCCcccceeecccccccccccccccc
Q 011345 224 SSPTNCPLLLYNHHALTPLGWPSIIQ 249 (488)
Q Consensus 224 pspat~p~ll~n~~pf~~l~~~s~~q 249 (488)
.-+++-|++| |+.||.---|+
T Consensus 306 kgtateplml-----msvfcqtesfp 326 (561)
T KOG1103|consen 306 KGTATEPLML-----MSVFCQTESFP 326 (561)
T ss_pred cccccchhHH-----hhhhhhcccCc
Confidence 6677888765 47777654443
No 56
>smart00338 BRLZ basic region leucin zipper.
Probab=81.04 E-value=6.7 Score=31.10 Aligned_cols=40 Identities=25% Similarity=0.303 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 161 LTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 161 LE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
=...+..|+.+...|..++..|..++..|..++..|+.++
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777777777777777777777777777777765
No 57
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=80.98 E-value=21 Score=34.66 Aligned_cols=46 Identities=17% Similarity=0.217 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 153 RRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKA 198 (488)
Q Consensus 153 RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRa 198 (488)
..+..+++++.++..|+.+.+.+++++...++++..+...+...+.
T Consensus 60 ~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 60 QLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444333
No 58
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=80.80 E-value=25 Score=40.39 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 011345 184 KEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 184 qe~~~LesEN~~LRaqL~kL~ 204 (488)
.++..-+.|-..|+++|+++.
T Consensus 636 ~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 636 GQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344555666666666654
No 59
>PRK11637 AmiB activator; Provisional
Probab=80.61 E-value=19 Score=38.05 Aligned_cols=22 Identities=27% Similarity=0.184 Sum_probs=15.8
Q ss_pred CCCCCcceeEecCCcccccccC
Q 011345 406 LSSVGGSFIVKHDNVLQSDYTG 427 (488)
Q Consensus 406 l~~~~~a~~vk~e~~~~~~~~~ 427 (488)
+...|..|+|.|-+|+.+-|..
T Consensus 356 ~~~~G~~vii~hg~g~~t~Y~~ 377 (428)
T PRK11637 356 LQGYGLVVVVEHGKGDMSLYGY 377 (428)
T ss_pred cCCcccEEEEEeCCCcEEEccC
Confidence 3456777888888877777764
No 60
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=80.11 E-value=20 Score=40.18 Aligned_cols=67 Identities=16% Similarity=0.232 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 132 KEERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKA 198 (488)
Q Consensus 132 kEeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRa 198 (488)
+..|....+++-..........-+..++.|+..+...+.++..|..+...+....+.+..++..|..
T Consensus 147 ~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~ 213 (546)
T PF07888_consen 147 ECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKE 213 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555666666555555555555555544444444444444444333
No 61
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=79.94 E-value=25 Score=31.75 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 169 SQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 169 e~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
..+-..|..++..+.+++..|..+|..|-.||..+
T Consensus 97 ~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 97 EEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444578888899999999999999999999764
No 62
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=79.81 E-value=0.34 Score=51.07 Aligned_cols=49 Identities=29% Similarity=0.396 Sum_probs=42.9
Q ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 128 TEAEKEERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLK 176 (488)
Q Consensus 128 t~eEkEeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lk 176 (488)
..++-++++.+=..+||.+|-++|.|||..+..|+.+...+..+|..|.
T Consensus 278 ~~~~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 278 VDEDPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred cCCCchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 3344566667778999999999999999999999999999999998886
No 63
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=79.49 E-value=28 Score=33.85 Aligned_cols=64 Identities=30% Similarity=0.347 Sum_probs=50.2
Q ss_pred CchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 127 LTEAEKEERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLE 190 (488)
Q Consensus 127 lt~eEkEeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~Le 190 (488)
+...+++....++.+++-+.-..+=..-+..+..++.++..|+.+++.|..++..+.++...|.
T Consensus 64 L~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 64 LKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667788888888888888888888888888888888888888888888777776665554
No 64
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=79.34 E-value=7.6 Score=41.39 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 150 TIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 150 SR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
--.|-+.....||.-+..++.||..|.-++..+.+++.+.+.|++.|..++.+
T Consensus 121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAE 173 (401)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 34566777888999999999999999999999999999999998888666654
No 65
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=79.22 E-value=33 Score=33.84 Aligned_cols=44 Identities=25% Similarity=0.249 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 160 ELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 160 ELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
+|..++..|+.|.+.|...+..+.+.+..++.+-..|..++..+
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444444443
No 66
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=79.01 E-value=7.2 Score=42.88 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011345 159 EELTRKAADLSQENESLKR 177 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkk 177 (488)
.+|+.+-+.|..||++|++
T Consensus 76 ~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 76 AKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 67
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=78.86 E-value=34 Score=29.61 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=56.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 138 CRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 138 RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
.++-..+......=..|...+..||.++..|..|...-.++.-.+.+....|..||+.|+.++.+-
T Consensus 6 ~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks 71 (96)
T PF08647_consen 6 VSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKS 71 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 455566667777778888999999999999999999999999999999999999999999988774
No 68
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=78.70 E-value=11 Score=32.88 Aligned_cols=41 Identities=27% Similarity=0.319 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhccc
Q 011345 167 DLSQENESLKREKELAVK------EYQSLETINKHLKAQVAKVMKSE 207 (488)
Q Consensus 167 ~Le~EN~~Lkkel~~L~q------e~~~LesEN~~LRaqL~kL~a~~ 207 (488)
-+..+|..|+.+|..|+. ++.....||..|+.++..|+...
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777664 55678889999999999987654
No 69
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=78.27 E-value=2.7 Score=34.39 Aligned_cols=31 Identities=29% Similarity=0.248 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 170 QENESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 170 ~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
.|.+.|+.+|..|..++..|+.||..||+.+
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3556677777777888888889999998754
No 70
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=77.79 E-value=14 Score=31.85 Aligned_cols=39 Identities=21% Similarity=0.130 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVKEYQSLETINKH 195 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~ 195 (488)
-++.||.+|...-....-|+-+++.|+.+...|..++..
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666555555555555555555555554444
No 71
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=77.45 E-value=12 Score=34.54 Aligned_cols=49 Identities=35% Similarity=0.340 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 155 QALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
...++.|+.++..|+.++..+-.+|..|..++..|+.+-..|..+|...
T Consensus 13 ~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 13 QDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777777777777777777777777777766654
No 72
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=77.19 E-value=1.4 Score=38.48 Aligned_cols=47 Identities=23% Similarity=0.325 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
.|++.|...+..|..+|..|+.++..|..++..+...+..|+..|..
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~ 71 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQ 71 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhh
Confidence 68999999999999999999999999999999888888888877644
No 73
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=77.17 E-value=12 Score=31.46 Aligned_cols=47 Identities=26% Similarity=0.212 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHh
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQ--------SLETINKHLKAQVAKVM 204 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~--------~LesEN~~LRaqL~kL~ 204 (488)
+.++|..+..|..||=.|+-+|-.|.+++. .+..+|..|+.++..|.
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~ 56 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLK 56 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 357788899999999999888888887766 34666777777666654
No 74
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.99 E-value=17 Score=31.10 Aligned_cols=54 Identities=22% Similarity=0.259 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 152 RRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 152 ~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
.==|-.+++|..+-..|..|-..++...+.|.++.+.|..|-..-..+|..|.|
T Consensus 21 ~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 21 TLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334567788888888888888888888888888888888887777777766654
No 75
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=75.88 E-value=13 Score=29.38 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 163 RKAADLSQENESLKREKELAVKEYQSLETINKHLKAQ 199 (488)
Q Consensus 163 ~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaq 199 (488)
..+..|+.+...|..++..|..++..|..++..|+.+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555555555555555555444443
No 76
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=75.67 E-value=12 Score=33.16 Aligned_cols=31 Identities=19% Similarity=0.137 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 153 RRQALCEELTRKAADLSQENESLKREKELAV 183 (488)
Q Consensus 153 RKQeyveELE~kV~~Le~EN~~Lkkel~~L~ 183 (488)
+.++.+++++.+++.++.+|..|+.++..|+
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555555555555555544
No 77
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=75.10 E-value=23 Score=35.56 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
-+-+|..+++.|+.|..+|+-+++.+..+++.+....+.|-.+|..+..
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3468899999999999999999999999999999999999999988753
No 78
>PF15294 Leu_zip: Leucine zipper
Probab=75.05 E-value=9.3 Score=39.46 Aligned_cols=45 Identities=27% Similarity=0.296 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 161 LTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 161 LE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
|..++..|+.||..|+.++..++.++.....|+..|..+|..++.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788999999999999999999999999999999999999876
No 79
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=74.99 E-value=12 Score=38.72 Aligned_cols=9 Identities=56% Similarity=0.822 Sum_probs=2.9
Q ss_pred ccccceeee
Q 011345 352 HFLLPVKIK 360 (488)
Q Consensus 352 ~~~l~~~~k 360 (488)
...||.+|.
T Consensus 263 ~~~lPy~i~ 271 (314)
T PF04111_consen 263 SFELPYKID 271 (314)
T ss_dssp ----SS-EC
T ss_pred ccccceecc
Confidence 566777774
No 80
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=74.90 E-value=21 Score=35.74 Aligned_cols=43 Identities=23% Similarity=0.236 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 161 LTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 161 LE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
|+++...+..+-..|+.+++....+++.++.++..|+.|...+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~ 191 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGL 191 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444443
No 81
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=73.86 E-value=14 Score=30.01 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQSLE 190 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~~Le 190 (488)
+++||.++..++.....++++++.+...++.++
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIE 34 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888887777777766666666665555444
No 82
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=73.69 E-value=14 Score=28.40 Aligned_cols=40 Identities=30% Similarity=0.330 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 161 LTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 161 LE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
||.....|...-..|+.+...|.++.+.|..+-..|+..+
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566666666666666666666666666666666666654
No 83
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=73.61 E-value=5.5 Score=38.24 Aligned_cols=42 Identities=21% Similarity=0.276 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
++++|.++.+.-..|.-|..|| ++.+.|..++++||.++..|
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDL 43 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDL 43 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH----------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 5778888887777777777666 23344444444444444444
No 84
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=73.28 E-value=10 Score=30.28 Aligned_cols=49 Identities=27% Similarity=0.285 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 153 RRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 153 RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
|++..+++||.++..-. +.=...-....+++..|+.||..|+++|..++
T Consensus 1 kw~~Rl~ELe~klkaer---E~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 1 KWLLRLEELERKLKAER---EARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred CHHHHHHHHHHHHHHhH---HhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667778877665422 22222234566778888999999999998764
No 85
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=72.79 E-value=19 Score=31.51 Aligned_cols=43 Identities=26% Similarity=0.378 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 154 RQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHL 196 (488)
Q Consensus 154 KQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~L 196 (488)
|+-|-...+.+|..|+.+|..|..+++.|+.++..-..|-..|
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556667777777777777777776666666555555444
No 86
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=72.71 E-value=11 Score=39.48 Aligned_cols=47 Identities=30% Similarity=0.436 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 159 EELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
+.|..++..|+++|..|+.++.....++..|..+|+.||+....++.
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~ 69 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQA 69 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777777777777777777777777777766666543
No 87
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=72.70 E-value=22 Score=40.10 Aligned_cols=50 Identities=28% Similarity=0.323 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 153 RRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 153 RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
+=+.|+..++.+.+.+....+.|+.+++....+++.|..+|..|+.++..
T Consensus 277 K~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~ 326 (581)
T KOG0995|consen 277 KFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIEL 326 (581)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34678888888888888888888888888888888888888888888754
No 88
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=72.70 E-value=45 Score=32.86 Aligned_cols=56 Identities=21% Similarity=0.204 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 147 ARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 147 ArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
....+..-.+.+..|+.+++.|+..|..|.+.+..+++++..|+.+...+..--..
T Consensus 47 ~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~ 102 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQE 102 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566667777777777777777777666666666666665555443333
No 89
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=72.61 E-value=15 Score=34.08 Aligned_cols=52 Identities=25% Similarity=0.265 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 154 RQALCEELTRKAADLSQENESLKRE--KELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 154 KQeyveELE~kV~~Le~EN~~Lkke--l~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
-++.+.+|+..+..|+.+...|... ...|...+..|+.++..|..+|..|..
T Consensus 84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777777777777775 467888899999999999999999875
No 90
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=72.48 E-value=28 Score=32.91 Aligned_cols=37 Identities=32% Similarity=0.294 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 168 LSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 168 Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
...++..+..+++.|++++...+.+...|+.|...+.
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888888888888888999999999988875
No 91
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=71.95 E-value=43 Score=32.61 Aligned_cols=53 Identities=13% Similarity=0.050 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 133 EERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKE 185 (488)
Q Consensus 133 EeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe 185 (488)
.-+-.+.+|....+-+-.+.+..++.+.||.++..-+.++.++..++..|.+.
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~k 139 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMK 139 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34455566666777777777777777777777765533333333333333333
No 92
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=71.80 E-value=6.8 Score=41.72 Aligned_cols=26 Identities=35% Similarity=0.326 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 164 KAADLSQENESLKREKELAVKEYQSL 189 (488)
Q Consensus 164 kV~~Le~EN~~Lkkel~~L~qe~~~L 189 (488)
+...|+.||..|++|++.|+.++++|
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666
No 93
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=71.38 E-value=19 Score=36.85 Aligned_cols=21 Identities=14% Similarity=0.052 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011345 183 VKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 183 ~qe~~~LesEN~~LRaqL~kL 203 (488)
...+..|.-+-..|+.+...|
T Consensus 183 eE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 183 EEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHhchhHHHHHHHHHHHh
Confidence 333333333333444444333
No 94
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=71.34 E-value=12 Score=29.74 Aligned_cols=27 Identities=37% Similarity=0.438 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELA 182 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L 182 (488)
..+.+|+.+++.++.+|..|+.++..|
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555444444443
No 95
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=70.88 E-value=32 Score=33.23 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 182 AVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 182 L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
+.+++..|..++..|+.++.++..
T Consensus 108 ~l~~l~~l~~~~~~l~~el~~~~~ 131 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELEKYSE 131 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666677777777777775543
No 96
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=70.88 E-value=16 Score=32.20 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQSLET 191 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~~Les 191 (488)
+.+|+.+++.++.+|..|+.++..|..++..|..
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4566666666666666666666666666666654
No 97
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=70.76 E-value=24 Score=34.90 Aligned_cols=41 Identities=27% Similarity=0.297 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 160 ELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 160 ELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
.|..++..|+.+|..|..+..-++++...|..+|..|+.++
T Consensus 99 ~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 99 SLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 46666666666776666666666677777766776666666
No 98
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=70.14 E-value=17 Score=36.62 Aligned_cols=42 Identities=24% Similarity=0.195 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
...|||.++..+..++..| +.++..|..+|..|-+++.=|+.
T Consensus 94 Rn~ELE~elr~~~~~~~~L-------~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 94 RNAELEEELRKQQQTISSL-------RREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 3466666666655555555 55555667899999999977753
No 99
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.89 E-value=41 Score=28.72 Aligned_cols=50 Identities=18% Similarity=0.050 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
+++.+||.+++--+.-.+.|...+...+..+..+..+-+.|-.++..++.
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~ 57 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 46789999999888888888888888888888888888888888877754
No 100
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=69.60 E-value=16 Score=41.59 Aligned_cols=17 Identities=12% Similarity=0.079 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCCCchhh
Q 011345 62 PVDPEPPCSDPIDDQVI 78 (488)
Q Consensus 62 ~~~~~p~~~~~~~d~~~ 78 (488)
++.-.|+-+|+.+.|..
T Consensus 313 A~ly~P~~dLsveEK~~ 329 (652)
T COG2433 313 AVLYTPDRDLSVEEKQE 329 (652)
T ss_pred CcccCCcccCCHHHHHH
Confidence 34555655666655544
No 101
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=69.39 E-value=18 Score=29.49 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 174 SLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 174 ~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
.+..++..++++...+..+|..|+.++..|.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3334444444444444555555555555543
No 102
>PHA02562 46 endonuclease subunit; Provisional
Probab=69.38 E-value=46 Score=35.66 Aligned_cols=32 Identities=13% Similarity=0.056 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 161 LTRKAADLSQENESLKREKELAVKEYQSLETI 192 (488)
Q Consensus 161 LE~kV~~Le~EN~~Lkkel~~L~qe~~~LesE 192 (488)
|+.++..|+.++..+..++..|..++..+..+
T Consensus 363 l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~ 394 (562)
T PHA02562 363 VKAAIEELQAEFVDNAEELAKLQDELDKIVKT 394 (562)
T ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 103
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=69.25 E-value=75 Score=32.96 Aligned_cols=62 Identities=23% Similarity=0.202 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 144 RESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 144 RESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
++...+-...-++..++|+.+-..+-.+.+.+..++..+.++.+.+..+-..+..+|.+|..
T Consensus 73 ~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 73 REELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333333333333444444445555555666666666666666666654
No 104
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=68.80 E-value=28 Score=33.15 Aligned_cols=48 Identities=23% Similarity=0.279 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
.+..|+.++..|..+...+.+-++.|..++..|..++..|..++.+|.
T Consensus 124 ~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 124 ELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555556666666666666666655553
No 105
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=68.55 E-value=38 Score=30.78 Aligned_cols=56 Identities=11% Similarity=0.095 Sum_probs=32.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 136 RVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLET 191 (488)
Q Consensus 136 R~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~Les 191 (488)
+..-+..-.|...-|+..=...-++|+..+..|+.+|....+.+..|+.++..+..
T Consensus 17 ~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 17 RLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARR 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666665555555666666666666666666666665555554443
No 106
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=68.02 E-value=52 Score=35.97 Aligned_cols=72 Identities=17% Similarity=0.205 Sum_probs=44.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011345 135 RRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMKS 206 (488)
Q Consensus 135 KR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a~ 206 (488)
++++-+.++=+.-.++....+.....|+..+..++.++..+..++......+..+...+..+...+.+|...
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 444444444444444455555666677777777777777777777666666666666666666666665443
No 107
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=67.75 E-value=47 Score=33.54 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 011345 173 ESLKREKELAVKEYQSLETINKHLKAQVAKVMKSE 207 (488)
Q Consensus 173 ~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a~~ 207 (488)
..|..+.....+.++.|..+|..|+++|.+|.+..
T Consensus 108 ~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~~~~ 142 (232)
T KOG2483|consen 108 QSLERKSATQQQDIEDLSRENRKLKARLEQLSLPQ 142 (232)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 33444444555666667779999999999987544
No 108
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=67.53 E-value=12 Score=34.32 Aligned_cols=36 Identities=31% Similarity=0.289 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHh
Q 011345 169 SQENESLKREKELAVKEYQSLETINKHLKA-----QVAKVM 204 (488)
Q Consensus 169 e~EN~~Lkkel~~L~qe~~~LesEN~~LRa-----qL~kL~ 204 (488)
+.|.+.|+.+|..|..++..|+.||.-||. +|.++.
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~spe~L~ql~ 106 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLKTLASPEQLAQLP 106 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 445555666666667777777777777763 455554
No 109
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=67.45 E-value=9 Score=35.18 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 154 RQALCEELTRKAADLSQENESLKREKEL 181 (488)
Q Consensus 154 KQeyveELE~kV~~Le~EN~~Lkkel~~ 181 (488)
|..-|++|..++..|+-||..|++++..
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456899999999999999999988764
No 110
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=67.30 E-value=20 Score=35.41 Aligned_cols=40 Identities=28% Similarity=0.304 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 161 LTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 161 LE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
|+.--..|..||..|+..+..+......|..++..|+.++
T Consensus 13 L~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~ 52 (193)
T PF14662_consen 13 LQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQL 52 (193)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 111
>PRK09039 hypothetical protein; Validated
Probab=67.15 E-value=59 Score=34.08 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 159 EELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
.+...+|..|..+.+.|+.++..|+..+..++.+.+..+.++..|
T Consensus 133 se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 133 ARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666666666666666666666666666666666666665
No 112
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=66.66 E-value=26 Score=33.75 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 154 RQALCEELTRKAADLSQENESLKREKELAVKEYQSLET 191 (488)
Q Consensus 154 KQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~Les 191 (488)
-+..+.+|..++..|+.+|..|.+++..+++.|..|..
T Consensus 109 l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 109 LKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555444
No 113
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=66.06 E-value=42 Score=35.34 Aligned_cols=64 Identities=14% Similarity=0.168 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 011345 144 RESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMKSE 207 (488)
Q Consensus 144 RESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a~~ 207 (488)
-|+++|-....+-.+.++|.....-+........+-+.+++++..|.+||.-|++||..-+..+
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~ 244 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKA 244 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888888888999999888888888888888888999999999999999999998876543
No 114
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=65.69 E-value=26 Score=27.78 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 175 LKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 175 Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
+..++..|++++..+..+|..|++++..|
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444555555555554
No 115
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=64.88 E-value=46 Score=27.68 Aligned_cols=46 Identities=20% Similarity=0.225 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
++..+.....|..|+.....++..+-.++..|..||..|+.++..+
T Consensus 21 ~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 21 NSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566777888888888888888888888888888888887665
No 116
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=64.68 E-value=59 Score=32.15 Aligned_cols=46 Identities=24% Similarity=0.198 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
|+..-..-+.-|+.|-++|+++++.=+.....++.|+..+..++..
T Consensus 128 ~~aqgDD~t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~e 173 (192)
T PF09727_consen 128 DMAQGDDFTNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLEE 173 (192)
T ss_pred HHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333456688889999999988888888888888887666644
No 117
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=64.45 E-value=30 Score=31.67 Aligned_cols=50 Identities=18% Similarity=0.088 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 011345 160 ELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMKSEVG 209 (488)
Q Consensus 160 ELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a~~~~ 209 (488)
++=.+|..|+.....|.++++.|++.+..|..||..|+-+..+|......
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 45567889999999999999999999999999999999988888654443
No 118
>smart00340 HALZ homeobox associated leucin zipper.
Probab=64.42 E-value=14 Score=28.82 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 180 ELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 180 ~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
+.|++-++.|..||+.|+.+++.|.+
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888899999999999999853
No 119
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=64.38 E-value=87 Score=28.64 Aligned_cols=45 Identities=24% Similarity=0.335 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 130 AEKEERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENES 174 (488)
Q Consensus 130 eEkEeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~ 174 (488)
.|+-.-.+||+..-..+.+.--.+=...-+.|..++-.|..+|+.
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~ 62 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEE 62 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444333333344444444444444433
No 120
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=64.31 E-value=2.5e+02 Score=34.13 Aligned_cols=105 Identities=17% Similarity=0.155 Sum_probs=56.9
Q ss_pred cccccccccccccccccccccccccccccccCCCCCCCCCCC-chhhHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHH
Q 011345 86 TACGNILIKPAKADQDAESLKRSSLCATRYISMAGGRSRQNL-TEAEKEERRVCRILANRE-SARQTIRRRQALCEELTR 163 (488)
Q Consensus 86 p~s~~~v~~~~k~e~d~~v~l~sp~~~~~s~s~~~gRkR~~l-t~eEkEeKR~RRkiKNRE-SArRSR~RKQeyveELE~ 163 (488)
|+-...+.-+.-.+...+.++.+|....+..|+...+-.... +..|.+.|.+-|-+..+. .+|.-|.--+..+.||+.
T Consensus 180 p~~t~~l~~lpPq~tpaqtPl~sP~~~~P~~Tta~a~v~l~saskte~eLr~QvrdLtEkLetlR~kR~EDk~Kl~Elek 259 (1243)
T KOG0971|consen 180 PAATGELSSLPPQETPAQTPLASPIIPTPVLTTAGAVVPLPSASKTEEELRAQVRDLTEKLETLRLKRAEDKAKLKELEK 259 (1243)
T ss_pred hhhhcccccCCCccCCCCCCccCCCCCCCCCCCccccCCCCccccchHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 444443444444556777778777755666666555533222 224456777766666554 444455555666777764
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 164 K---AADLSQENESLKREKELAVKEYQSLE 190 (488)
Q Consensus 164 k---V~~Le~EN~~Lkkel~~L~qe~~~Le 190 (488)
. .+.++.=..++..+...|++++....
T Consensus 260 mkiqleqlqEfkSkim~qqa~Lqrel~raR 289 (1243)
T KOG0971|consen 260 MKIQLEQLQEFKSKIMEQQADLQRELKRAR 289 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 34444444445555555555554433
No 121
>PHA03162 hypothetical protein; Provisional
Probab=64.29 E-value=4.8 Score=37.63 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 153 RRQALCEELTRKAADLSQENESLKREKE 180 (488)
Q Consensus 153 RKQeyveELE~kV~~Le~EN~~Lkkel~ 180 (488)
+++.-||+|..++..|+-||..|++++.
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999999983
No 122
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=63.67 E-value=52 Score=31.73 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
..+|+.++..|+.++..|..++..|..+++.++..+..+++...+.++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~ 169 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQ 169 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888888888888888888888888888887777776666555543
No 123
>PRK12704 phosphodiesterase; Provisional
Probab=63.46 E-value=65 Score=35.74 Aligned_cols=7 Identities=14% Similarity=0.420 Sum_probs=3.6
Q ss_pred cCCCCCC
Q 011345 372 YNDLNDI 378 (488)
Q Consensus 372 ~nd~~~~ 378 (488)
+-|+|..
T Consensus 367 LHDIGK~ 373 (520)
T PRK12704 367 LHDIGKA 373 (520)
T ss_pred HHccCcC
Confidence 3555554
No 124
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=63.33 E-value=1.1e+02 Score=28.38 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 151 IRRRQALCEELTRKAADLSQEN-ESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 151 R~RKQeyveELE~kV~~Le~EN-~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
....+..+..|+.....|..+. ..++.++..|.--+..+...+..+|.+|..|-
T Consensus 57 ~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG 111 (136)
T PF04871_consen 57 LEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKELG 111 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcC
Confidence 3444555566666666666554 55667777777788888899999999998874
No 125
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=63.32 E-value=68 Score=26.15 Aligned_cols=47 Identities=11% Similarity=0.165 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
+.+++|...|..|......|...+..|+...+....|-.+-.++|-.
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45778888888888888888888888777777666665555554443
No 126
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=62.90 E-value=73 Score=26.18 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 164 KAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 164 kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
++...+..|-.+.+++.....++..|..+-..|+.++.++.
T Consensus 19 EL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 19 ELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445666777777777766666666666666766666553
No 127
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=62.05 E-value=59 Score=34.34 Aligned_cols=47 Identities=19% Similarity=0.214 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 159 EELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
..|...+...+.+|..|..++..|++++..+.-+|..||.++.++..
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~ 114 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRV 114 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhh
Confidence 56778889999999999999999999999999999999999998743
No 128
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=61.81 E-value=60 Score=36.61 Aligned_cols=60 Identities=22% Similarity=0.317 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 145 ESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 145 ESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
+.|.+.|..-.+.+.+++..+..++.+...++..+..+..+...|..||..|+.+|..+.
T Consensus 130 ~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 130 EKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 445555555555566666666666677777777777777777777777777766666554
No 129
>PHA03155 hypothetical protein; Provisional
Probab=61.72 E-value=10 Score=34.79 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKEL 181 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~ 181 (488)
-+|+|+.++..|+-||..|++++..
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3789999999999999999998754
No 130
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=61.62 E-value=67 Score=36.58 Aligned_cols=45 Identities=20% Similarity=0.264 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 152 RRRQALCEELTRKAADLSQ------------------------ENESLKREKELAVKEYQSLETINKHL 196 (488)
Q Consensus 152 ~RKQeyveELE~kV~~Le~------------------------EN~~Lkkel~~L~qe~~~LesEN~~L 196 (488)
..+.+.+.+||.++..+.. +|..|+.++..|+..+-.|.++|..|
T Consensus 118 ~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~el 186 (617)
T PF15070_consen 118 QEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMEL 186 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHh
Confidence 3556666676666555544 45566677777777666666666443
No 131
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=61.42 E-value=1.3e+02 Score=29.42 Aligned_cols=52 Identities=25% Similarity=0.353 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 151 IRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 151 R~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
..+.-..+.+||.++-.|+.+...+..+.+....++.++.++...|.+.+..
T Consensus 126 ~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~ 177 (190)
T PF05266_consen 126 LKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIEN 177 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666655555555666666666656555544
No 132
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=61.17 E-value=1.1e+02 Score=30.03 Aligned_cols=43 Identities=19% Similarity=0.106 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 161 LTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 161 LE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
...++..|+.+=..+..++-.+...|..|+.|...|+.+..++
T Consensus 173 ~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 173 AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555556666666666666666665554
No 133
>PRK09039 hypothetical protein; Validated
Probab=60.40 E-value=73 Score=33.39 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQSLETINKHL 196 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~L 196 (488)
+.-|..+++.|+.+...|..++..++++......+-..|
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333333333333333333333
No 134
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=60.23 E-value=37 Score=31.96 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 173 ESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 173 ~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
.+|.++...|+++++.|..||..++.++..+.
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666667777788888889999888887764
No 135
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=60.02 E-value=39 Score=30.73 Aligned_cols=41 Identities=17% Similarity=0.241 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 165 AADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 165 V~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
|-.|+.-...|.+++...+++...|.+||++|-+=|..|+.
T Consensus 65 VLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMS 105 (120)
T KOG3650|consen 65 VLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMS 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Confidence 33344444456666667777777888999999999999863
No 136
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=59.89 E-value=27 Score=32.44 Aligned_cols=44 Identities=18% Similarity=0.189 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQ 199 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaq 199 (488)
..+...|..+..|+.|...--.++..|++++..+...|..|..+
T Consensus 87 sli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 87 SLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34556666677777777777777778888888888888888654
No 137
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=59.41 E-value=86 Score=31.92 Aligned_cols=47 Identities=19% Similarity=0.159 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
.....|..++..++.+-..|..++..|..+...|+.+-..|+.++.+
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~ 135 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLER 135 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555444444444444444433
No 138
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=58.98 E-value=43 Score=34.93 Aligned_cols=71 Identities=25% Similarity=0.238 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 130 AEKEERRVCRILANRESARQTIRRR---------QALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 130 eEkEeKR~RRkiKNRESArRSR~RK---------QeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
.|-++|-.+-|+.|- |.==.|- |..+++||..+..+..++....++++.+++.+..|..+...|+.+|
T Consensus 87 ~evEekyrkAMv~na---QLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 87 AEVEEKYRKAMVSNA---QLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred HHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445888888888873 3221111 4456677777777777777777777888888888888888888888
Q ss_pred HHH
Q 011345 201 AKV 203 (488)
Q Consensus 201 ~kL 203 (488)
...
T Consensus 164 ~~r 166 (302)
T PF09738_consen 164 KQR 166 (302)
T ss_pred HHH
Confidence 754
No 139
>PRK04406 hypothetical protein; Provisional
Probab=58.61 E-value=76 Score=26.74 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
++.|+.++..|+....-+..-|+.|.+.+..-..+...|+.++..|..
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~ 53 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVG 53 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999988888888888999999888754
No 140
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=58.36 E-value=57 Score=34.24 Aligned_cols=68 Identities=18% Similarity=0.216 Sum_probs=46.0
Q ss_pred CCCCCCchhhH-HHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 122 RSRQNLTEAEK-EERRVCRILANRESARQTIRRRQALC---EELTRKAADLSQENESLKREKELAVKEYQSL 189 (488)
Q Consensus 122 RkR~~lt~eEk-EeKR~RRkiKNRESArRSR~RKQeyv---eELE~kV~~Le~EN~~Lkkel~~L~qe~~~L 189 (488)
..+...+..++ ..||+.|++.--..-++-|..+.+.+ ++||.+-+.|+.+...|.+||..|++-+.+.
T Consensus 217 s~~~~~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 217 SAHPYKTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred cCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444443 66777788855556666677666654 4566888889999999999988887755443
No 141
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=58.06 E-value=58 Score=35.44 Aligned_cols=67 Identities=19% Similarity=0.288 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 133 EERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 133 EeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
.++|.|.+|+.-|.- |.++..|..+-..-+..|+.|.++|.++++.-..+....+.+...|..+|..
T Consensus 112 aE~khrKli~dLE~d---Re~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLee 178 (561)
T KOG1103|consen 112 AEKKHRKLIKDLEAD---REAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEE 178 (561)
T ss_pred HHHHHHHHHHHHHHH---HHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666665543 3445555555556678888888889888887777766666666666555543
No 142
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=56.91 E-value=18 Score=31.38 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 154 RQALCEELTRKAADLSQENESLKREKELAV 183 (488)
Q Consensus 154 KQeyveELE~kV~~Le~EN~~Lkkel~~L~ 183 (488)
|+.+++.|..++..++.+|..|..++..++
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456667777777777777777766666543
No 143
>PRK14127 cell division protein GpsB; Provisional
Probab=56.76 E-value=34 Score=30.91 Aligned_cols=28 Identities=14% Similarity=0.264 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAV 183 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~ 183 (488)
++++++-..++.|..||..|+.++..|+
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~ 57 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLK 57 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665555444433
No 144
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=56.74 E-value=1e+02 Score=34.82 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 174 SLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 174 ~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
+|+..+..++.+.+.|..||+.|+.-+..|-
T Consensus 421 Elks~lrv~qkEKEql~~EkQeL~~yi~~Le 451 (546)
T PF07888_consen 421 ELKSSLRVAQKEKEQLQEEKQELLEYIERLE 451 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666777778888888888777764
No 145
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=56.71 E-value=1e+02 Score=37.38 Aligned_cols=35 Identities=11% Similarity=-0.204 Sum_probs=23.0
Q ss_pred CCCCCCCcccccccccccCCCCCCCcccccccccc
Q 011345 316 HAPISNGLKVLQDETSARNGYGSGSSSKMTADKEN 350 (488)
Q Consensus 316 ~~~ps~~lk~~Qd~~~~~~~c~~~ss~~~~~~~~~ 350 (488)
+++||-=.-.+=|+..|-|--++-|..-.+-.+||
T Consensus 570 ~~~pTil~~le~ddp~V~N~LID~s~iE~~lLiEd 604 (1074)
T KOG0250|consen 570 YEFPTILDALEFDDPEVLNVLIDKSGIEQVLLIED 604 (1074)
T ss_pred CCCCceeeeeecCChHHHHHhhhhccceeEEEecc
Confidence 44555544455577777777777777777766666
No 146
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=56.42 E-value=28 Score=29.41 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 011345 169 SQENESLKREKELAVKEYQSLETINKHLKAQVAKVMKSEVGET 211 (488)
Q Consensus 169 e~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a~~~~~~ 211 (488)
..+...+..++..++++...|..||..|+.++..+..+.-.+.
T Consensus 34 ~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe~ 76 (97)
T PF04999_consen 34 RHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSSPSRIER 76 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 3345556666777777777788888888888888766544443
No 147
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=56.30 E-value=88 Score=31.14 Aligned_cols=57 Identities=18% Similarity=0.096 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 131 EKEERRVCRILANRESARQTIRRRQALCE----ELTRKAADLSQENESLKREKELAVKEYQ 187 (488)
Q Consensus 131 EkEeKR~RRkiKNRESArRSR~RKQeyve----ELE~kV~~Le~EN~~Lkkel~~L~qe~~ 187 (488)
|...+|.||....+.++=.-+-+=-..++ ..-.++..|+..|.+|+.+++.|+.-|-
T Consensus 19 eel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCC 79 (195)
T PF10226_consen 19 EELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCC 79 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34678888888887777555443322222 2224455566666666666555554443
No 148
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=56.17 E-value=43 Score=28.71 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 172 NESLKREKELAVKEYQSLETINKHLKAQVA 201 (488)
Q Consensus 172 N~~Lkkel~~L~qe~~~LesEN~~LRaqL~ 201 (488)
+..|..++..|+++...|..+|..|+.++.
T Consensus 70 ~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 70 DQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344566677777777777888888887764
No 149
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=56.09 E-value=1.2e+02 Score=33.20 Aligned_cols=77 Identities=18% Similarity=0.176 Sum_probs=41.7
Q ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHH---HHHHHHHHHH
Q 011345 128 TEAEKEERRVCRILANRESARQTIRRRQALCEELTRKAADLSQE----------------NESLKRE---KELAVKEYQS 188 (488)
Q Consensus 128 t~eEkEeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~E----------------N~~Lkke---l~~L~qe~~~ 188 (488)
++....+|.+||+...-+==||-|.+=...+.||-.-|-.+..+ +.+|++. ...++.+...
T Consensus 222 ~~~~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~ 301 (411)
T KOG1318|consen 222 TDATALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKK 301 (411)
T ss_pred cccchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 33444555555555555666666666667777776655444111 1222222 2234444455
Q ss_pred HHHHHHHHHHHHHHHh
Q 011345 189 LETINKHLKAQVAKVM 204 (488)
Q Consensus 189 LesEN~~LRaqL~kL~ 204 (488)
|+..|+.|..++++|.
T Consensus 302 le~~n~~L~~rieeLk 317 (411)
T KOG1318|consen 302 LESTNQELALRIEELK 317 (411)
T ss_pred HHhHHHHHHHHHHHHH
Confidence 6667777777777763
No 150
>PRK02119 hypothetical protein; Provisional
Probab=56.08 E-value=90 Score=26.11 Aligned_cols=48 Identities=10% Similarity=0.069 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
+..++.++..|+....-+...++.|.+.+..-..+...|+.++..|..
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999888888888888888888888888888887754
No 151
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=55.64 E-value=13 Score=28.56 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 166 ADLSQENESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 166 ~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
..+-..|..|..++..|..++..|..||..||.++
T Consensus 10 ~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 10 RELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp --------------------HHHHHHHHHHHHHHH
T ss_pred HHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 44555667777777777777788888888888765
No 152
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=55.61 E-value=81 Score=34.98 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 155 QALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVA 201 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~ 201 (488)
--.++.|+.++..|+.||.+|+..+..|...+..|..+-+.+-++|.
T Consensus 296 sle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE 342 (502)
T KOG0982|consen 296 SLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLE 342 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 34567778889999999999999888888877777776655444443
No 153
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=55.47 E-value=35 Score=26.35 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 175 LKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 175 Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
-+..+..|..++..|..+|..|++++..|.
T Consensus 23 kk~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 23 KKQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334456677777777788888888777764
No 154
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=55.25 E-value=54 Score=33.77 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENE 173 (488)
Q Consensus 158 veELE~kV~~Le~EN~ 173 (488)
++.|..++..+..+.+
T Consensus 211 L~~lr~eL~~~~~~i~ 226 (325)
T PF08317_consen 211 LEALRQELAEQKEEIE 226 (325)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444444
No 155
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=55.25 E-value=43 Score=30.75 Aligned_cols=59 Identities=20% Similarity=0.143 Sum_probs=38.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 139 RILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 139 RkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
|..+.|-.+---|. ||..+++.|+-|+..+..-...|.+++..|+..++..|++..++-
T Consensus 15 r~ErdR~~WeiERa-------EmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~ 73 (134)
T PF08232_consen 15 RFERDRNQWEIERA-------EMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLK 73 (134)
T ss_pred HHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34455555555553 555666666666666666666677777778888888777776653
No 156
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=55.11 E-value=61 Score=28.58 Aligned_cols=47 Identities=17% Similarity=0.111 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADL--SQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 156 eyveELE~kV~~L--e~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
.++..||.+++.| ..+...|+.+++.+..++..+..+-+.+..++.-
T Consensus 49 ~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~l 97 (106)
T PF10805_consen 49 RRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDL 97 (106)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3445555555555 5555555555555555555555554444444433
No 157
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=54.60 E-value=74 Score=29.06 Aligned_cols=68 Identities=24% Similarity=0.312 Sum_probs=37.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 136 RVCRILANRESARQTIRRRQALCEELT---RKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 136 R~RRkiKNRESArRSR~RKQeyveELE---~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
+..|+.+-|..|+.---+--...+++. .++..|+.+...|..+...+.+-+-.-..++..|+..|..+
T Consensus 38 el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 38 ELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 344555555555555544444443332 34444555555555555555555555566777777777766
No 158
>PRK00106 hypothetical protein; Provisional
Probab=54.17 E-value=1.2e+02 Score=34.21 Aligned_cols=6 Identities=17% Similarity=0.490 Sum_probs=2.6
Q ss_pred CCCCCC
Q 011345 373 NDLNDI 378 (488)
Q Consensus 373 nd~~~~ 378 (488)
-|+|..
T Consensus 383 HDIGK~ 388 (535)
T PRK00106 383 HDMGKA 388 (535)
T ss_pred HhccCc
Confidence 444444
No 159
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=54.12 E-value=69 Score=32.56 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELA 182 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L 182 (488)
+.+||.+-+.|..++..|++++..|
T Consensus 224 ~~~leken~~lr~~v~~l~~el~~~ 248 (269)
T KOG3119|consen 224 VAELEKENEALRTQVEQLKKELATL 248 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 160
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=54.04 E-value=38 Score=34.62 Aligned_cols=42 Identities=31% Similarity=0.343 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
+..+|..+-+.|+.++.++ ..+..+...|+.||++||..+.-
T Consensus 67 ~~~~~~~en~~Lk~~l~~~----~~~~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 67 SLKDLALENEELKKELAEL----EQLLEEVESLEEENKRLKELLDF 108 (284)
T ss_pred HhHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344444444444444333 34455677899999999988744
No 161
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=53.94 E-value=1e+02 Score=26.66 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 159 EELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
.+|..++..-+.|..+|..-++.|+.++.....-|..|.+++..+..
T Consensus 8 k~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 8 KELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677777777777777777777777777777788888777776643
No 162
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=53.43 E-value=2e+02 Score=27.10 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 168 LSQENESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 168 Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
+..++..|.+.++..+.++..|+.-|..+...|
T Consensus 78 l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l 110 (140)
T PF10473_consen 78 LRSEKENLDKELQKKQEKVSELESLNSSLENLL 110 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 333333333333334444444444444444333
No 163
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=53.16 E-value=49 Score=29.46 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 168 LSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 168 Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
|+.+.+--..+...|.+.+..++.+|..|..+|.++.
T Consensus 6 LR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk 42 (96)
T PF11365_consen 6 LRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYK 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444455666677778889999999999874
No 164
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=52.85 E-value=69 Score=27.61 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETI 192 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesE 192 (488)
.-++.|-.+|...+.||..|..+++.|+.=+..|...
T Consensus 30 ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 30 DSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666666666666666666655555443
No 165
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=52.71 E-value=63 Score=29.81 Aligned_cols=40 Identities=15% Similarity=0.305 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 153 RRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETI 192 (488)
Q Consensus 153 RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesE 192 (488)
.|..-+++|+.+++.|+-+...|.++-+.+++++..|.++
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~ 106 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSE 106 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777776666666665555544443
No 166
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=52.39 E-value=1.3e+02 Score=33.46 Aligned_cols=21 Identities=48% Similarity=0.643 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHH-------Hhhhhhhcc
Q 011345 459 DAATAAEARKRR-------KELTKLKNL 479 (488)
Q Consensus 459 da~aaaearkrr-------keltklknl 479 (488)
|+++++.-..|| |-|++|.+|
T Consensus 418 D~lsa~rpgar~e~~~~~~~rl~~le~i 445 (514)
T TIGR03319 418 DALSAARPGARRESLENYIKRLEKLEEI 445 (514)
T ss_pred HHhcCCCCCCcccCHHHHHHHHHHHHHH
Confidence 344444445555 345555554
No 167
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=51.86 E-value=20 Score=35.19 Aligned_cols=32 Identities=19% Similarity=0.101 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 152 RRRQALCEELTRKAADLSQENESLKREKELAV 183 (488)
Q Consensus 152 ~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~ 183 (488)
..++..+.+|+.++..|+.+...+++.+..|-
T Consensus 102 e~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 102 EKRKQEIMELRLKVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777776666655555543
No 168
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=51.84 E-value=1.1e+02 Score=26.83 Aligned_cols=46 Identities=11% Similarity=0.204 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 160 ELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 160 ELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
.+...+..|..-...|.++...|..+++.|..-|+..|.++++...
T Consensus 30 ~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~~ 75 (83)
T PF03670_consen 30 AINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQLS 75 (83)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444444444444444445555666677788888888877643
No 169
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=51.83 E-value=90 Score=28.71 Aligned_cols=43 Identities=19% Similarity=0.272 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 161 LTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 161 LE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
.|..-..=+-|-.+|+.+|..|+-+...++.-|..|..+|.-|
T Consensus 16 ~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkML 58 (134)
T PF08232_consen 16 FERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKML 58 (134)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455566677777777777777777766666666554
No 170
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=51.46 E-value=51 Score=34.12 Aligned_cols=60 Identities=23% Similarity=0.306 Sum_probs=34.4
Q ss_pred HHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 139 RILANRESA-RQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 139 RkiKNRESA-rRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
.-|+|+|.. +.+|.||+.-.+++ ..|+...- -..++..|++++..++.+|....++|..+
T Consensus 131 K~IR~~E~sl~p~R~~r~~l~d~I----~kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~ 191 (271)
T PF13805_consen 131 KSIRNREESLQPSRDRRRKLQDEI----AKLKYKDP-QSPKLVVLEQELVRAEAENLVAEAQLSNI 191 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-T-TTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHhHHHHHHH----HHHHhcCC-CChHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 556788765 44555555433333 33333221 12356677777777777777777777654
No 171
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=51.31 E-value=69 Score=33.03 Aligned_cols=10 Identities=50% Similarity=0.647 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 011345 194 KHLKAQVAKV 203 (488)
Q Consensus 194 ~~LRaqL~kL 203 (488)
..|++++..|
T Consensus 279 ~~Lk~~~~~L 288 (325)
T PF08317_consen 279 KRLKAKVDAL 288 (325)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 172
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.29 E-value=2e+02 Score=29.85 Aligned_cols=60 Identities=18% Similarity=0.287 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 132 KEERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLET 191 (488)
Q Consensus 132 kEeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~Les 191 (488)
.-+..+.-..++.--++.--......++++-.++..++.++..+..++..|+.++..++.
T Consensus 35 ~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 35 NQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555666666666666666666666666665555554443
No 173
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=50.95 E-value=34 Score=37.90 Aligned_cols=29 Identities=45% Similarity=0.492 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVK 184 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~q 184 (488)
..+.+|+.++..|..+|+.|++|++.|++
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568888999999999999999988876
No 174
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=50.87 E-value=43 Score=35.22 Aligned_cols=44 Identities=27% Similarity=0.304 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQ 199 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaq 199 (488)
..++.|..++..|+.||..|+.+...|..+...++.+.+.|-..
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~d 203 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLD 203 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHH
Confidence 45677777777777777777777777776666666665555443
No 175
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=50.77 E-value=60 Score=28.85 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 171 ENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 171 EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
.+..|..++..+..+++.+...+..+.+++..|
T Consensus 81 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 81 QLEQLEERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444333
No 176
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=50.77 E-value=1.1e+02 Score=27.00 Aligned_cols=41 Identities=22% Similarity=0.195 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 162 TRKAADLSQENESL--KREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 162 E~kV~~Le~EN~~L--kkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
+.++..++.+...| +..+..|+-++..+.-+-+.|.+++..
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~ 90 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQG 90 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55555555555555 445555555555555555555555443
No 177
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=50.75 E-value=1.5e+02 Score=28.28 Aligned_cols=14 Identities=29% Similarity=0.351 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 011345 168 LSQENESLKREKEL 181 (488)
Q Consensus 168 Le~EN~~Lkkel~~ 181 (488)
++.++..|..++..
T Consensus 87 ~~~e~k~L~~~v~~ 100 (158)
T PF09744_consen 87 WRQERKDLQSQVEQ 100 (158)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444333333
No 178
>PF14282 FlxA: FlxA-like protein
Probab=50.59 E-value=69 Score=28.22 Aligned_cols=45 Identities=24% Similarity=0.331 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 159 EELTRKAADLSQ----ENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 159 eELE~kV~~Le~----EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
..|..++..|.. ..+.-..++..|+.++..|+.+-..|..+..+-
T Consensus 29 ~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 29 KQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555 223445556666666666666666665555443
No 179
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.48 E-value=79 Score=32.68 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
..++.|..+|..+..+...++.++..+..++..|..+-..|+..|..+.
T Consensus 52 ~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 52 NEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555555555555555555543
No 180
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=50.36 E-value=1.5e+02 Score=36.10 Aligned_cols=50 Identities=24% Similarity=0.280 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHh
Q 011345 155 QALCEELTRKAADLSQENESLKREKELAVK----------EYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkkel~~L~q----------e~~~LesEN~~LRaqL~kL~ 204 (488)
...+++|+..+-.|+.||..|.++|..|.. .+..++.++..|++-+-+|.
T Consensus 529 ~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL~ 588 (1195)
T KOG4643|consen 529 SNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDALN 588 (1195)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 355667777777777777777777766554 23344444555555555554
No 181
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=50.26 E-value=1.6e+02 Score=34.69 Aligned_cols=48 Identities=29% Similarity=0.335 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKR---------------------EKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkk---------------------el~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
.++.++..++..+..||..|.. ++..|..+++.++.||..|+-++.-+
T Consensus 92 ~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~ 160 (769)
T PF05911_consen 92 AKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVL 160 (769)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666665544 34456666666666666666555443
No 182
>PF14645 Chibby: Chibby family
Probab=50.21 E-value=66 Score=29.17 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 161 LTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 161 LE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
|..+...|+.||+-|+-+++.|..-+.....+..-+..+|
T Consensus 76 l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~l 115 (116)
T PF14645_consen 76 LRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKEL 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455677888999998888888776666666655555443
No 183
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=50.14 E-value=65 Score=28.32 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENE-SLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~-~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
.|-..=|.+|..|..--+ +..+++..|..++..|..||..|+.++..
T Consensus 27 ~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~ 74 (87)
T PF12709_consen 27 LYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDT 74 (87)
T ss_pred HHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666653222 24445555666666666666666665543
No 184
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=49.97 E-value=51 Score=27.48 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLET 191 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~Les 191 (488)
..++.|+.+.+.++.+...|..++..+..++..+..
T Consensus 62 ~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~ 97 (106)
T PF01920_consen 62 EAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555554444444333
No 185
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=49.69 E-value=61 Score=26.44 Aligned_cols=31 Identities=16% Similarity=0.083 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 153 RRQALCEELTRKAADLSQENESLKREKELAV 183 (488)
Q Consensus 153 RKQeyveELE~kV~~Le~EN~~Lkkel~~L~ 183 (488)
.....+..++.++..++.+|..|+.++..|.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455667777777777777777777766653
No 186
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=49.49 E-value=1.6e+02 Score=29.97 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 011345 183 VKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 183 ~qe~~~LesEN~~LRaqL~kL~a 205 (488)
.++++-|..-|+.|++||..+.+
T Consensus 234 ~eei~fLk~tN~qLKaQLegI~a 256 (259)
T KOG4001|consen 234 KEEIEFLKETNRQLKAQLEGILA 256 (259)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc
Confidence 34555677778888888877654
No 187
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=49.15 E-value=62 Score=26.31 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 159 EELTRKAADLSQENESLKREKELAVKEY 186 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~qe~ 186 (488)
..++..+..++.||+.|+..++.+.+-.
T Consensus 10 ~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 10 PRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555554444444
No 188
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=49.00 E-value=2.2e+02 Score=28.40 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 165 AADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 165 V~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
+..+..|+..++.++..|..++..|...|..|..+|..+
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~l 249 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLREL 249 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHH
Confidence 444555555566666666666666666666666666554
No 189
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=48.33 E-value=70 Score=34.12 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 161 LTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 161 LE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
|+.++..|+.++..|..++..+ ..+...|+.++.+|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQKNL-------KRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Confidence 4444455555555444444444 444555555666654
No 190
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=48.33 E-value=2.2e+02 Score=26.10 Aligned_cols=68 Identities=22% Similarity=0.309 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 133 EERRVCRILANRESARQTIRRRQALCEELTR-------KAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 133 EeKR~RRkiKNRESArRSR~RKQeyveELE~-------kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
..+++.+++..-+.+...-.+|++.++.|+. ++..|+.+...+..++..+..++..+ +..++.++...
T Consensus 108 ~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i---~~~~~~El~~f 182 (218)
T cd07596 108 TLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI---SERLKEELKRF 182 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 4444445566667777777777666666642 55555555555555555544433332 33344444443
No 191
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=48.14 E-value=2.3e+02 Score=26.34 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 149 QTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHL 196 (488)
Q Consensus 149 RSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~L 196 (488)
.-++..++.++.++..+..+..+-..|..++...+.+.+.+..+...+
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 170 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERL 170 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555544433333333344333333333
No 192
>PHA02562 46 endonuclease subunit; Provisional
Probab=47.89 E-value=1.8e+02 Score=31.23 Aligned_cols=13 Identities=23% Similarity=0.128 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 011345 155 QALCEELTRKAAD 167 (488)
Q Consensus 155 QeyveELE~kV~~ 167 (488)
+..+.+|+.++..
T Consensus 336 ~~~i~el~~~i~~ 348 (562)
T PHA02562 336 SKKLLELKNKIST 348 (562)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444333333
No 193
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=47.69 E-value=1.4e+02 Score=25.01 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 154 RQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 154 KQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
|-+.+..|-.+-+.|......+...|..|+.+...++.+...|+.++..+
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~ 59 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEEL 59 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555443
No 194
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=47.13 E-value=45 Score=35.42 Aligned_cols=37 Identities=19% Similarity=0.113 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 011345 164 KAADLSQENESLKREKELAVKEYQ---SLETINKHLKAQV 200 (488)
Q Consensus 164 kV~~Le~EN~~Lkkel~~L~qe~~---~LesEN~~LRaqL 200 (488)
....|.+||++|++|+..|+.++. .+..||..|+..+
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr~ll 97 (337)
T PRK14872 58 HALVLETENFLLKERIALLEERLKSYEEANQTPPLFSEIL 97 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566666666666666644433 4456666655433
No 195
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.69 E-value=1.8e+02 Score=34.80 Aligned_cols=64 Identities=23% Similarity=0.221 Sum_probs=50.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 139 RILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 139 RkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
....+-..-.--+++-...++.|...+..|+.||+.|..+++....+..+|..++.-|+.|+..
T Consensus 654 ~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~ 717 (970)
T KOG0946|consen 654 ELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGI 717 (970)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3334444445556667777888888899999999999999999988899999999999999874
No 196
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=46.42 E-value=31 Score=28.45 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 159 EELTRKAADLSQENESLKREKELA 182 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L 182 (488)
+-|..++..|+..|..|..++..|
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~L 40 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLL 40 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433333
No 197
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=46.17 E-value=2.1e+02 Score=27.44 Aligned_cols=57 Identities=16% Similarity=0.292 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 149 QTIRRRQALCEELTRKAAD-LSQ-------ENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 149 RSR~RKQeyveELE~kV~~-Le~-------EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
+-|.+|+.-++.+..++.. +.. ++..|.+--+.|.......+.-|..|+.+|+.|.+
T Consensus 117 kKR~~k~lDyd~~~~k~~k~~~~k~~~~~kd~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP~l~~ 181 (216)
T cd07599 117 KKRDHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERKLEEAKEEYEALNELLKSELPKLLA 181 (216)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3467777888888888877 433 34455555556666666777789999999999864
No 198
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=46.09 E-value=1.6e+02 Score=31.90 Aligned_cols=70 Identities=19% Similarity=0.214 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Q 011345 133 EERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKE--------------LAVKEYQSLETINKHLKA 198 (488)
Q Consensus 133 EeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~--------------~L~qe~~~LesEN~~LRa 198 (488)
-.-++|.+.-|-|--+.-| +-+++-..+.+.|+..|+.|..++. .|+.-+..++.||+.|..
T Consensus 73 lq~kirk~~e~~eglr~i~----es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lql 148 (401)
T PF06785_consen 73 LQTKIRKITEKDEGLRKIR----ESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQL 148 (401)
T ss_pred HHHHHHHHHhccHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666655544 2334444455556666666655543 455566778889999999
Q ss_pred HHHHHhcc
Q 011345 199 QVAKVMKS 206 (488)
Q Consensus 199 qL~kL~a~ 206 (488)
+|..+...
T Consensus 149 qL~~l~~e 156 (401)
T PF06785_consen 149 QLDALQQE 156 (401)
T ss_pred hHHHHHHH
Confidence 99888654
No 199
>PRK02793 phi X174 lysis protein; Provisional
Probab=46.07 E-value=1.5e+02 Score=24.71 Aligned_cols=47 Identities=13% Similarity=0.041 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 159 EELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
.+++.++..|+....-+..-|+.|.+.+..-..+...|..++..|..
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~ 50 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTE 50 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888888888888888888887777778888888877754
No 200
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=45.99 E-value=2.8e+02 Score=28.87 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 155 QALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVA 201 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~ 201 (488)
+..++.++.++...+.+...++.++.....++..|+.+-..|...+.
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~ 252 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIK 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555666666666666666666666655555554443
No 201
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=45.98 E-value=29 Score=38.28 Aligned_cols=41 Identities=29% Similarity=0.309 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 159 EELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQ 199 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaq 199 (488)
++|..+|..|.++|..|+-+++.+.-.|.-+..+|+-|+.-
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~A 86 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLA 86 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhh
Confidence 35555566666666666666666666666666666555443
No 202
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=45.68 E-value=71 Score=31.83 Aligned_cols=31 Identities=35% Similarity=0.408 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 170 QENESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 170 ~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
.||..|.++|+.+..++..|..||..|+.-+
T Consensus 125 ~ENe~Lh~~ie~~~eEi~~lk~en~~L~ela 155 (200)
T PF07412_consen 125 EENEKLHKEIEQKDEEIAKLKEENEELKELA 155 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666666666665543
No 203
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=45.46 E-value=92 Score=30.18 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 163 RKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 163 ~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
.+...|..-|.-|+.+++.....+..|..++..|..++..+
T Consensus 74 qR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l 114 (182)
T PF15035_consen 74 QRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERL 114 (182)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444443
No 204
>PRK04325 hypothetical protein; Provisional
Probab=45.45 E-value=1.2e+02 Score=25.36 Aligned_cols=48 Identities=10% Similarity=0.046 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
++.++.++..|+....-+...|+.|.+.+..-..+...|+.++..|..
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~ 51 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQ 51 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888889999888888888888888888777778888888877744
No 205
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=45.20 E-value=64 Score=34.41 Aligned_cols=32 Identities=28% Similarity=0.217 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQ 187 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~ 187 (488)
..+..|+.+...++.+...+++++..+++++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (398)
T PTZ00454 29 KELEFLDIQEEYIKEEQKNLKRELIRAKEEVK 60 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888888888888777655433
No 206
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=45.18 E-value=1.4e+02 Score=25.89 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 175 LKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 175 Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
+..++..|...++.++.+|..|.++|..+.
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566788889999999999999999998764
No 207
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=44.71 E-value=74 Score=28.72 Aligned_cols=46 Identities=20% Similarity=0.176 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 011345 163 RKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMKSEV 208 (488)
Q Consensus 163 ~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a~~~ 208 (488)
.+...|..+...-...+..+.++++.|...|..|-.++..|+....
T Consensus 26 ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 26 AKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555444455666667777777777777777777765433
No 208
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=44.58 E-value=89 Score=35.57 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 011345 184 KEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 184 qe~~~LesEN~~LRaqL~kL~ 204 (488)
..+..|..||..|++++..|.
T Consensus 566 ~~l~~L~~En~~L~~~l~~le 586 (722)
T PF05557_consen 566 STLEALQAENEDLLARLRSLE 586 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 567789999999999998874
No 209
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=44.52 E-value=82 Score=33.13 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 160 ELTRKAADLSQENESLKREKELAVKEYQSLETINKHL 196 (488)
Q Consensus 160 ELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~L 196 (488)
+|+.+++.|+..+..|..++..+++++..+..++..|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (389)
T PRK03992 12 ELEEQIRQLELKLRDLEAENEKLERELERLKSELEKL 48 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555444444444444444444333
No 210
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=44.44 E-value=1.6e+02 Score=32.37 Aligned_cols=72 Identities=10% Similarity=0.190 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 133 EERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 133 EeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
.+++++..-+-+..=+...+.-...+..++.++.....++.++.+.|..+...+..|+.+-+.=+..|.++.
T Consensus 50 ~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L 121 (420)
T COG4942 50 LEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQL 121 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444555666667777777777788888888888888888877654444555543
No 211
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.37 E-value=1.1e+02 Score=33.09 Aligned_cols=37 Identities=27% Similarity=0.272 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 166 ADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 166 ~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
+.|..--++|...++.|+++...|...-..|+...+.
T Consensus 242 EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 242 EELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3333333444444555555555555555555555544
No 212
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=44.26 E-value=79 Score=35.16 Aligned_cols=33 Identities=6% Similarity=0.006 Sum_probs=16.4
Q ss_pred cCCCCCCCcccCCcchhhHHHHHHHHHHHHhhh
Q 011345 442 HPEKKQEPVNYPSRKLVDAATAAEARKRRKELT 474 (488)
Q Consensus 442 ~~ek~q~~~~~~~k~lvda~aaaearkrrkelt 474 (488)
+...+..-|+|..-=-++-+--|+|+|-++++.
T Consensus 393 i~aGr~V~iVf~kGf~L~~~~~~~~~~~~~~~~ 425 (475)
T PRK13729 393 IGAGNEVTVVFQDGFQLKTIEEMALEKAQSRAE 425 (475)
T ss_pred eCCCCEEEEEEeCCeecccHHHHHHHhhhhhhh
Confidence 334444445554443345555555566555543
No 213
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=44.25 E-value=2.5e+02 Score=25.53 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011345 181 LAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 181 ~L~qe~~~LesEN~~LRaqL~k 202 (488)
...+++...+.+|..|+..|..
T Consensus 39 k~tkEL~~Ak~e~~~Lr~dl~a 60 (125)
T PF03245_consen 39 KYTKELADAKAEIDRLRADLAA 60 (125)
T ss_pred HHHHHHHHHHhhHHHHHHHHHc
Confidence 4456777888899999998865
No 214
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=44.21 E-value=3.3e+02 Score=26.90 Aligned_cols=47 Identities=23% Similarity=0.312 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
...|-.-...+..||..|++++..|.+++..|+..+..|..+-..|.
T Consensus 151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~ 197 (206)
T PF14988_consen 151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQ 197 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556677889999999999999999999999999888776664
No 215
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=43.98 E-value=1.8e+02 Score=23.90 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVKEYQSL 189 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~qe~~~L 189 (488)
-.-.++.++...+..|..|..+|..|.+++..+
T Consensus 26 ~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 26 ANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555566666655555555555444
No 216
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=43.89 E-value=34 Score=31.54 Aligned_cols=27 Identities=30% Similarity=0.290 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 179 KELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 179 l~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
++.|..++..|..||+.||.+|..-.+
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~~ 31 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSVG 31 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 456777888889999999999987544
No 217
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=43.80 E-value=3.2e+02 Score=27.95 Aligned_cols=41 Identities=15% Similarity=0.239 Sum_probs=23.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 139 RILANRESARQTIRRRQALCEELTRKAADLSQENESLKREK 179 (488)
Q Consensus 139 RkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel 179 (488)
.+..-.+.+...=.-++..+++|+.+|..++.+...++.++
T Consensus 35 k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~ 75 (239)
T COG1579 35 KAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERI 75 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555566666777777777666665554443
No 218
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=43.76 E-value=75 Score=26.05 Aligned_cols=25 Identities=28% Similarity=0.220 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELA 182 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L 182 (488)
++||+.++..|+.|..+++.++..-
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888887766543
No 219
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=43.42 E-value=1.5e+02 Score=24.18 Aligned_cols=45 Identities=11% Similarity=0.025 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 161 LTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 161 LE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
||.++..|+....-+...++.|.+.+..-..+...|+.++..|..
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777666777766666666666667777666643
No 220
>PRK00846 hypothetical protein; Provisional
Probab=43.33 E-value=1.6e+02 Score=25.36 Aligned_cols=47 Identities=4% Similarity=0.041 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 159 EELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
+.|+.++..|+....-...-++.|.+.+.....+...|+.+|..|..
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~ 55 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 55 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888877777888877777777777888888776643
No 221
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=43.19 E-value=74 Score=33.46 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
+..|+.++..++.+++.|+.++..|..+...+..+...|+.++..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 3 LEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 467888888899999999999999999999999999999999988764
No 222
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=42.99 E-value=1.2e+02 Score=27.31 Aligned_cols=41 Identities=15% Similarity=0.286 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 162 TRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 162 E~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
-.++..+-.-|++|+..-..|+++++.|...+..|...+..
T Consensus 56 Y~Qs~~Yv~~NerLqqa~~~Lkkk~e~L~~age~Le~~i~~ 96 (97)
T PF15136_consen 56 YQQSRTYVAMNERLQQARDQLKKKCEELRQAGEELERDIEQ 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44567777788999998899999999999999999887753
No 223
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=42.54 E-value=1.2e+02 Score=28.38 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
-++....-+..|+.||.-|+..+-.+++-++.=...-..|++||...
T Consensus 79 vl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~~ 125 (126)
T PF13118_consen 79 VLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKIM 125 (126)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35566677888999999999999999888888888888889888654
No 224
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=42.45 E-value=1.4e+02 Score=27.84 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 154 RQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 154 KQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
-...+.+|+.++..|..|.-.=.++++.+-.+.+.|..+++.|..-|.-|
T Consensus 12 He~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~L 61 (120)
T PF10482_consen 12 HEKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVL 61 (120)
T ss_pred HHHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 34456777777777777766556667777777777777777777776555
No 225
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=42.25 E-value=2.8e+02 Score=26.82 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 152 RRRQALCEELTRKAADLSQENESLKREKELAVKEYQ 187 (488)
Q Consensus 152 ~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~ 187 (488)
..-...+..|+.+...|+.+...|+.+.+.+.++..
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~ 158 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREE 158 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666665555554443
No 226
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=42.22 E-value=1.4e+02 Score=26.78 Aligned_cols=45 Identities=24% Similarity=0.276 Sum_probs=25.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 141 LANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKE 185 (488)
Q Consensus 141 iKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe 185 (488)
..-||.|++..-=++...+.|+.--+.|..|...-+++|..|.++
T Consensus 54 f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~ 98 (100)
T PF04568_consen 54 FGKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKH 98 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667776665555555555555555555555555555555443
No 227
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=42.21 E-value=3.7e+02 Score=26.89 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 153 RRQALCEELTRKAADLSQENESLKREKELA 182 (488)
Q Consensus 153 RKQeyveELE~kV~~Le~EN~~Lkkel~~L 182 (488)
+-+..+..|+.++..|+..|..|..++..+
T Consensus 220 ~~r~~~~~l~~el~~l~~~~~~Le~~l~~l 249 (312)
T PF00038_consen 220 ELRRQIQSLQAELESLRAKNASLERQLREL 249 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHhhhhhhccccchhhhhhhHHHH
Confidence 334444555555555555555555544443
No 228
>smart00340 HALZ homeobox associated leucin zipper.
Probab=42.20 E-value=57 Score=25.52 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAV 183 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~ 183 (488)
++-|..-.+.|..||.+|++++..|+
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777888888888877776653
No 229
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=42.12 E-value=3.7e+02 Score=26.88 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=45.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 138 CRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 138 RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
-++..-+.-..|.-..-+++...|...+.....+-.....+-...+++...|+.|...++.+|.+|+.
T Consensus 108 ~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~ 175 (192)
T PF11180_consen 108 AQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQR 175 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666677777777777777766666665555556666777777777777777766653
No 230
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=42.05 E-value=45 Score=38.17 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 159 EELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
.+|=.+|..|..|+.-|+-++...++-...|+..++.|.++|.++-+
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ 371 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKA 371 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777788888888777777777666777777777666666543
No 231
>KOG2577 consensus Transcription factor E2F/dimerization partner (TDP) [Transcription]
Probab=41.94 E-value=3.6e+02 Score=29.20 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH----HHHHHHHhc
Q 011345 154 RQALCEELTRKAADLSQENESLKREKELAVKEYQSLET--INKHL----KAQVAKVMK 205 (488)
Q Consensus 154 KQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~Les--EN~~L----RaqL~kL~a 205 (488)
-.+.++.|+.+++.|+.+-..|-+.+..+++.+..|.. +|+.| +++|.++.+
T Consensus 142 ~~e~~~~l~~e~~~L~~~E~~LD~~i~~~q~~L~~lted~~n~~laYVT~eDI~~i~~ 199 (354)
T KOG2577|consen 142 VPERLNGLEAEVEDLSQEEDDLDQLIRDCQQNLRLLTEDVENRRLAYVTYEDIRSIPG 199 (354)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccceeeeHHHHhhccc
Confidence 34666778888888888888888888888888777765 57766 788888754
No 232
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=41.35 E-value=96 Score=29.19 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 011345 154 RQALCEELTRKAADLSQ---ENESLKREKELAVKEYQ 187 (488)
Q Consensus 154 KQeyveELE~kV~~Le~---EN~~Lkkel~~L~qe~~ 187 (488)
-+..+.+....+..|+. .|+.|+.++..|+..+.
T Consensus 32 ~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 32 LKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 33444444444444444 44555555555444443
No 233
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=40.99 E-value=2.2e+02 Score=32.30 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 159 EELTRKAADLSQENESLKREKELAVK 184 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~q 184 (488)
..||.++..|..||.+|..++..+++
T Consensus 165 ~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 165 KALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 44555566666666666666555554
No 234
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=40.88 E-value=1e+02 Score=32.62 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 179 KELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 179 l~~L~qe~~~LesEN~~LRaqL~k 202 (488)
+..|+++...|..+++.|..+|..
T Consensus 180 vN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 180 VNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 556888888999999999988755
No 235
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=40.84 E-value=2.1e+02 Score=37.12 Aligned_cols=66 Identities=20% Similarity=0.172 Sum_probs=59.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 140 ILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 140 kiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
.....+.+++++.-=++.+...+.+++.|++|++.|+..+..+.+....++.+...+..++..+.+
T Consensus 1644 lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~ 1709 (1930)
T KOG0161|consen 1644 LQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNA 1709 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 344788999999999999999999999999999999999999999999999999999999988753
No 236
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=40.76 E-value=1.5e+02 Score=27.58 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVK 184 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~q 184 (488)
.+..|..++..|+.+...+..++..+..
T Consensus 36 EI~sL~~K~~~lE~eld~~~~~l~~~k~ 63 (143)
T PF12718_consen 36 EITSLQKKNQQLEEELDKLEEQLKEAKE 63 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333
No 237
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=40.68 E-value=1.1e+02 Score=27.32 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 161 LTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 161 LE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
|...+..|+.++..+..++..|.+.+..+..+.+.|+.++
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455566666666666666666666666666666666553
No 238
>PRK14160 heat shock protein GrpE; Provisional
Probab=40.25 E-value=1.1e+02 Score=30.52 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 160 ELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 160 ELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
.|+.++..|+.++..|..++..+..++..+.++..-+|.++
T Consensus 58 ~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~ 98 (211)
T PRK14160 58 ELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRT 98 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444343333
No 239
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=40.22 E-value=2.6e+02 Score=27.90 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 163 RKAADLSQENESLKREKELAVKEYQSL 189 (488)
Q Consensus 163 ~kV~~Le~EN~~Lkkel~~L~qe~~~L 189 (488)
.++..|+.|...++.++..|++++..|
T Consensus 154 ~ea~aL~~e~~aaqaQL~~lQ~qv~~L 180 (192)
T PF11180_consen 154 QEAQALEAERRAAQAQLRQLQRQVRQL 180 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444343333333333
No 240
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=39.95 E-value=2e+02 Score=26.10 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVKEYQ 187 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~qe~~ 187 (488)
.+-.++.++..|...|..|.++++.|+.++.
T Consensus 41 ~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 41 ALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666667666666666665444
No 241
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=39.58 E-value=2.5e+02 Score=33.88 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=39.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 139 RILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 139 RkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
-..+.-++|+.+.-...+...+|...++.+..+-..+..+.+...+.++.++.|-..|..++.+|+.
T Consensus 449 di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~ 515 (980)
T KOG0980|consen 449 DIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQR 515 (980)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556777776666666666666666666666555555555555555555555555555555543
No 242
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=39.49 E-value=3.7e+02 Score=26.14 Aligned_cols=7 Identities=29% Similarity=0.728 Sum_probs=2.7
Q ss_pred cceeecc
Q 011345 296 PLYVVPC 302 (488)
Q Consensus 296 p~y~~pC 302 (488)
|+.|+++
T Consensus 220 py~i~~~ 226 (302)
T PF10186_consen 220 PYPITPS 226 (302)
T ss_pred CCCcccC
Confidence 3333333
No 243
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=39.35 E-value=2.8e+02 Score=33.99 Aligned_cols=52 Identities=25% Similarity=0.309 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 153 RRQALCEELTRKAADLSQ--------ENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 153 RKQeyveELE~kV~~Le~--------EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
++|..++.|+..+..++. +..++..++..|.++...++.++..|++++..+.
T Consensus 369 ~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~ 428 (1074)
T KOG0250|consen 369 KLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVK 428 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444443 3444555566666777777777777777666653
No 244
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=39.03 E-value=1.8e+02 Score=28.51 Aligned_cols=35 Identities=31% Similarity=0.485 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 148 RQTIRRRQALCEELTRKAADLSQENESLKREKELA 182 (488)
Q Consensus 148 rRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L 182 (488)
+.--++|++++.+-+.+...++.+...|+.++...
T Consensus 138 ~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~ 172 (176)
T PF12999_consen 138 KEGLKIRQELIEEAKKKREELEKKLEELEKEIQAA 172 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566777766666666555555555555443
No 245
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=38.92 E-value=1.5e+02 Score=30.84 Aligned_cols=28 Identities=25% Similarity=0.243 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 175 LKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 175 Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
+-.+...|++++..|+.+-+.|++++.+
T Consensus 219 ~~ae~seLq~r~~~l~~~L~~L~~e~~r 246 (289)
T COG4985 219 YVAEKSELQKRLAQLQTELDALRAELER 246 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3344555666666666676677776655
No 246
>PHA03155 hypothetical protein; Provisional
Probab=38.82 E-value=38 Score=31.13 Aligned_cols=24 Identities=38% Similarity=0.336 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 179 KELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 179 l~~L~qe~~~LesEN~~LRaqL~k 202 (488)
++.|..++..|..||+.|+.+|..
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456667777788899999988855
No 247
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.57 E-value=2.7e+02 Score=32.21 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 011345 165 AADLSQENESLKREKELAVK---EYQSLETINKHLKAQV 200 (488)
Q Consensus 165 V~~Le~EN~~Lkkel~~L~q---e~~~LesEN~~LRaqL 200 (488)
...|+.||=.|++++..|++ +++.|.-+|++|...+
T Consensus 172 YSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~ 210 (772)
T KOG0999|consen 172 YSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEET 210 (772)
T ss_pred HHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 34455555555555555543 4445555555554443
No 248
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=38.57 E-value=1.6e+02 Score=24.12 Aligned_cols=30 Identities=7% Similarity=0.190 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 161 LTRKAADLSQENESLKREKELAVKEYQSLE 190 (488)
Q Consensus 161 LE~kV~~Le~EN~~Lkkel~~L~qe~~~Le 190 (488)
++.++..|+..+..+..++..+.+++..+.
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~ 47 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKIK 47 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444334333333333
No 249
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=38.57 E-value=93 Score=26.86 Aligned_cols=11 Identities=18% Similarity=0.150 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 011345 188 SLETINKHLKA 198 (488)
Q Consensus 188 ~LesEN~~LRa 198 (488)
.|+.++..++.
T Consensus 44 kLq~~~~~~~~ 54 (76)
T PF11544_consen 44 KLQDQLLNLQR 54 (76)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 34444444443
No 250
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=38.40 E-value=1.3e+02 Score=31.87 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 175 LKREKELAVKEYQSLETINKHLKAQVA 201 (488)
Q Consensus 175 Lkkel~~L~qe~~~LesEN~~LRaqL~ 201 (488)
|..++-.|++++..+..||-.|.++|.
T Consensus 239 LlsqivdlQ~r~k~~~~EnEeL~q~L~ 265 (306)
T PF04849_consen 239 LLSQIVDLQQRCKQLAAENEELQQHLQ 265 (306)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 444444444444444444444444443
No 251
>PHA03162 hypothetical protein; Provisional
Probab=38.26 E-value=42 Score=31.64 Aligned_cols=27 Identities=26% Similarity=0.202 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 179 KELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 179 l~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
++.|..++..|..||+.|+.+|..-.+
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~~~ 41 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEGTD 41 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 566777888889999999999966433
No 252
>PRK02224 chromosome segregation protein; Provisional
Probab=38.22 E-value=3.3e+02 Score=31.35 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 011345 184 KEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 184 qe~~~LesEN~~LRaqL~kL~ 204 (488)
.++..+..++..|..++.++.
T Consensus 572 ~~~~~~~~~~~~l~~~~~~le 592 (880)
T PRK02224 572 EEVAELNSKLAELKERIESLE 592 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554
No 253
>PRK00295 hypothetical protein; Provisional
Probab=38.08 E-value=1.8e+02 Score=24.01 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 161 LTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 161 LE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
++.++..|+....-+...|+.|.+.+..-..+...|+.++..|..
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIK 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666666666666666666543
No 254
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=37.98 E-value=2.6e+02 Score=23.92 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 173 ESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 173 ~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
+.|..+...+..++..++.+-..+..++..+
T Consensus 70 ~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 70 EELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555666666666666554
No 255
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=37.91 E-value=2.6e+02 Score=27.20 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 155 QALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
.+.+..|+..+..+......|+.++..|+.++..+...-..|.++...-
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A 146 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAA 146 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777888888888888888888888888887777776666554
No 256
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=37.84 E-value=3.7e+02 Score=29.35 Aligned_cols=46 Identities=20% Similarity=0.151 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 160 ELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 160 ELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
+|..-...+..+..+|..++..+.+++..++.+-..|+.+|.++.+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444455555666777777777777777777777777777777754
No 257
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=37.63 E-value=3.4e+02 Score=25.24 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 163 RKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVA 201 (488)
Q Consensus 163 ~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~ 201 (488)
.++..+......+.+++..+.+.+.....+-..++.++.
T Consensus 130 ~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~ 168 (191)
T PF04156_consen 130 ERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLE 168 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444443333333333333333333333
No 258
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=37.63 E-value=4.7e+02 Score=27.10 Aligned_cols=73 Identities=16% Similarity=0.165 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 133 EERRVCRILANRESARQTIRRRQAL-------CEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 133 EeKR~RRkiKNRESArRSR~RKQey-------veELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
+..+.++++....+.+.--++++-. ..-+..-+-....+|..+.+++..-++....|+.+...|++++..|+.
T Consensus 142 el~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~ 221 (258)
T PF15397_consen 142 ELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQA 221 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777666655433322211 112344455666899999999999999999999999999999999975
No 259
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=37.57 E-value=5.2e+02 Score=27.33 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 150 TIRRRQALCEELTRKAADLSQENESLKREK---ELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 150 SR~RKQeyveELE~kV~~Le~EN~~Lkkel---~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
+.+-+---++++|.++...-..|.-|..++ +.|....+.|..|-+.||++|+-..
T Consensus 127 akRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqelavr~ 184 (333)
T KOG1853|consen 127 AKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQELAVRT 184 (333)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344446677777777777777666653 4566778888888888888886543
No 260
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=37.31 E-value=1.5e+02 Score=31.23 Aligned_cols=51 Identities=24% Similarity=0.274 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 150 TIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 150 SR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
-|++..+.+++|+.+...|.++|...+..+..|..++..+..--.-|...+
T Consensus 102 ~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l 152 (355)
T PF09766_consen 102 QRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYL 152 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 467777888999999999999999999988888888887777666666555
No 261
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=37.20 E-value=2.9e+02 Score=33.45 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
.++++..++..|+...+.+..++..+++++..+......++.++..
T Consensus 440 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 485 (1163)
T COG1196 440 ELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSS 485 (1163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444433
No 262
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=36.98 E-value=3.3e+02 Score=33.36 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 146 SARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 146 SArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
+-.+.+...|..+++|+......-.+...|...+.....++..+.++|.+|++++..+
T Consensus 408 ~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del 465 (1200)
T KOG0964|consen 408 DTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDEL 465 (1200)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555554444444444444444444444444444444333
No 263
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=36.96 E-value=1.3e+02 Score=30.24 Aligned_cols=48 Identities=8% Similarity=-0.012 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 153 RRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 153 RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
-=+..++.|..+|..|+-+++++.-+++.++++-..+-.+-..+..++
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~ 105 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGG 105 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 447889999999999999999999999999999888887765554433
No 264
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=36.85 E-value=1.9e+02 Score=26.03 Aligned_cols=70 Identities=20% Similarity=0.268 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 011345 133 EERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKEL----AVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 133 EeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~----L~qe~~~LesEN~~LRaqL~kL 203 (488)
..+-.+.++++-..++.-..=|.+ +.++..++..|+.+....+..+.. ...+-..|+.+...++.++..|
T Consensus 44 q~~YE~El~~Ha~~~~~L~~lr~e-~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL 117 (132)
T PF07926_consen 44 QQKYERELVKHAEDIKELQQLREE-LQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDL 117 (132)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444433332 445555555555555554444332 3334445555556565555554
No 265
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=36.80 E-value=1.5e+02 Score=34.36 Aligned_cols=40 Identities=33% Similarity=0.355 Sum_probs=32.0
Q ss_pred cccccceeeccCCCCCCCcccCCcchhhHHHHHHHHHHHHhhhhhh
Q 011345 432 VSKIANHLVSHPEKKQEPVNYPSRKLVDAATAAEARKRRKELTKLK 477 (488)
Q Consensus 432 ~s~~~~~~~~~~ek~q~~~~~~~k~lvda~aaaearkrrkeltklk 477 (488)
=+.+-|..|++--|||+.+.+|+--|-+ .|.||.+|-|+-
T Consensus 378 ds~i~qv~c~~t~k~Qe~~SLpewalcg------~~~~RrqLlk~S 417 (907)
T KOG2264|consen 378 DSPIVQVKCSFTCKNQENCSLPEWALCG------ERERRRQLLKSS 417 (907)
T ss_pred cCceEEEEEeeccccCCCCCcchhhhcc------chHHHHHHhccc
Confidence 3567788999999999999999776644 477888887754
No 266
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=36.80 E-value=1.4e+02 Score=28.90 Aligned_cols=24 Identities=13% Similarity=0.321 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 165 AADLSQENESLKREKELAVKEYQS 188 (488)
Q Consensus 165 V~~Le~EN~~Lkkel~~L~qe~~~ 188 (488)
++.....|..|...+..|...+..
T Consensus 90 LEq~~~~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 90 LEQARKANEALQEDLQKLTQDWER 113 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433333
No 267
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=36.66 E-value=12 Score=38.00 Aligned_cols=40 Identities=35% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHL 196 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~L 196 (488)
.++|+..++..|..-...|..+++.|++++..|..||..|
T Consensus 123 ~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 123 RIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433333333333333333333333444443
No 268
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.42 E-value=1.5e+02 Score=30.56 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 011345 160 ELTRKAADLSQENESLKREKELAVKEYQSLE----TINKHLKAQVAKV 203 (488)
Q Consensus 160 ELE~kV~~Le~EN~~Lkkel~~L~qe~~~Le----sEN~~LRaqL~kL 203 (488)
.|..++..++++-.+|..+++.++..+.... ..++.|..++.+|
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l 101 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKL 101 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Confidence 3344444444444444444444444444444 4566666677776
No 269
>PF08962 DUF1876: Domain of unknown function (DUF1876); InterPro: IPR015057 This entry represents a set of hypothetical bacterial proteins. ; PDB: 2FGG_A.
Probab=36.19 E-value=35 Score=29.91 Aligned_cols=20 Identities=50% Similarity=0.524 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q 011345 4 MELEAAEALADLAHLAMIEN 23 (488)
Q Consensus 4 ~e~eaae~ladla~lam~~~ 23 (488)
-||-+|.||.|||+-.+...
T Consensus 52 dElA~ARAL~dLa~qLl~~a 71 (87)
T PF08962_consen 52 DELAAARALSDLAHQLLEAA 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 39999999999999888654
No 270
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=36.10 E-value=1.2e+02 Score=26.76 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 161 LTRKAADLSQENESLKREKELAVK 184 (488)
Q Consensus 161 LE~kV~~Le~EN~~Lkkel~~L~q 184 (488)
|+.++..++.+|-.+++++..+..
T Consensus 15 l~~~L~~v~~~~l~l~~~n~el~~ 38 (106)
T PF05837_consen 15 LQEKLSDVEKKRLRLKRRNQELAQ 38 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 271
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=35.95 E-value=4.3e+02 Score=29.45 Aligned_cols=9 Identities=33% Similarity=0.346 Sum_probs=3.2
Q ss_pred hHHHHHHHH
Q 011345 459 DAATAAEAR 467 (488)
Q Consensus 459 da~aaaear 467 (488)
|.-|.-=||
T Consensus 475 d~~~~~la~ 483 (514)
T TIGR03319 475 DDQAVVLAR 483 (514)
T ss_pred hHHHHHHHH
Confidence 333333333
No 272
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=35.89 E-value=3.2e+02 Score=26.24 Aligned_cols=46 Identities=15% Similarity=0.296 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 130 AEKEERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESL 175 (488)
Q Consensus 130 eEkEeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~L 175 (488)
-++..+.++++|+.|.-|+--=++|-....+|..++..-+.....+
T Consensus 79 ~~~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~M 124 (152)
T PF11500_consen 79 HEKAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEM 124 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446777778888777776666667676666666655444333333
No 273
>PRK03918 chromosome segregation protein; Provisional
Probab=35.73 E-value=4.3e+02 Score=30.25 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 159 EELTRKAADLSQENESLKREKELAVK 184 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~q 184 (488)
.+|+.++..+..+...+..++..+..
T Consensus 196 ~~l~~~~~~l~~ei~~l~~e~~~l~~ 221 (880)
T PRK03918 196 KEKEKELEEVLREINEISSELPELRE 221 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 274
>PRK04863 mukB cell division protein MukB; Provisional
Probab=35.50 E-value=3.5e+02 Score=34.23 Aligned_cols=68 Identities=18% Similarity=0.162 Sum_probs=30.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 135 RRVCRILANRESARQTIRRRQA-------------LCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVA 201 (488)
Q Consensus 135 KR~RRkiKNRESArRSR~RKQe-------------yveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~ 201 (488)
++++.+.+.++.|.+-+.-+++ .+++|+.++...+.+...+..++..+..++..++.+-..|+.++.
T Consensus 321 ~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLa 400 (1486)
T PRK04863 321 EAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLA 400 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666655443332 223333444444444444444444444444444444444444444
Q ss_pred H
Q 011345 202 K 202 (488)
Q Consensus 202 k 202 (488)
.
T Consensus 401 e 401 (1486)
T PRK04863 401 D 401 (1486)
T ss_pred H
Confidence 3
No 275
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=35.24 E-value=76 Score=29.30 Aligned_cols=28 Identities=29% Similarity=0.397 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAV 183 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~ 183 (488)
+.++-|..++..|+..|..|.+++..|+
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555443
No 276
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=35.11 E-value=1.6e+02 Score=29.35 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 150 TIRRRQALCEELTRKAADLSQE----NESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 150 SR~RKQeyveELE~kV~~Le~E----N~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
-|.||+.-.+....+++.|+.. -..|.+--+.|...-+..+.-|..|+.+|++|.+
T Consensus 112 KR~hKllDYD~~r~~~~kL~~k~~kDe~KL~kAe~el~~Ak~~ye~lN~~Lk~ELP~L~~ 171 (211)
T cd07611 112 KRSRKLVDYDSARHHLEALQTSKRKDEGRIAKAEEEFQKAQKVFEEFNVDLQEELPSLWS 171 (211)
T ss_pred HHHHHHhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777642 2345554455555556667779999999999975
No 277
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=35.11 E-value=2.1e+02 Score=26.99 Aligned_cols=49 Identities=20% Similarity=0.337 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHH
Q 011345 155 QALCEELTRKAADLSQENESLKR---EKELAVKEYQSLETINK----HLKAQVAKV 203 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkk---el~~L~qe~~~LesEN~----~LRaqL~kL 203 (488)
.+.++.|+.++.....+...|+. -++.|+.++..|..+|. .+.+++..+
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~ 81 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQM 81 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666777766666677766 46677777777777777 555555544
No 278
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=35.08 E-value=4.9e+02 Score=30.42 Aligned_cols=45 Identities=20% Similarity=0.141 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
..+.+||.+-..|.+|.+++..+++.|++.+..-..|-..|+-.+
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~i 137 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEI 137 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHH
Confidence 455666666666666666666666666655555544444444333
No 279
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=35.03 E-value=2.2e+02 Score=31.54 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=23.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 141 LANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAV 183 (488)
Q Consensus 141 iKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~ 183 (488)
-+|..+|++-=.|-.+....|..++..|-.+...|..+...|.
T Consensus 129 ~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~ 171 (499)
T COG4372 129 RQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQ 171 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566665555555555666666655555555554444443
No 280
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=34.59 E-value=4.2e+02 Score=25.35 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 175 LKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 175 Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
+..+...|..++..|+.+|+.|...+
T Consensus 87 ~~~e~k~L~~~v~~Le~e~r~L~~~~ 112 (158)
T PF09744_consen 87 WRQERKDLQSQVEQLEEENRQLELKL 112 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444555555555554433
No 281
>PRK04863 mukB cell division protein MukB; Provisional
Probab=34.36 E-value=3.7e+02 Score=33.97 Aligned_cols=49 Identities=16% Similarity=0.106 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 155 QALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
+..+++++.++..++.+...|+.++..+.+.+..+..+...+.+.+..+
T Consensus 375 eeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~L 423 (1486)
T PRK04863 375 DEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQAL 423 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444454444444455555555544444444444
No 282
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=34.30 E-value=1.3e+02 Score=35.17 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhhhhhhc
Q 011345 460 AATAAEARKRRKELTKLKN 478 (488)
Q Consensus 460 a~aaaearkrrkeltklkn 478 (488)
.+|..|+.+-+.||..||.
T Consensus 362 ~vav~Ev~~Lk~ELk~Lk~ 380 (717)
T PF09730_consen 362 KVAVSEVIQLKAELKALKS 380 (717)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566666677777766654
No 283
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=34.28 E-value=2.4e+02 Score=23.10 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011345 160 ELTRKAADLSQENESLKREKE 180 (488)
Q Consensus 160 ELE~kV~~Le~EN~~Lkkel~ 180 (488)
.|-.+|..|..+...|+..+.
T Consensus 14 ~L~~kvdqLs~dv~~lr~~v~ 34 (56)
T PF04728_consen 14 TLNSKVDQLSSDVNALRADVQ 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 284
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=34.17 E-value=4.3e+02 Score=28.29 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHHH
Q 011345 133 EERRVCRILANRESARQTIRRRQALC--------------------------------EELTRKAADLSQENESLKREKE 180 (488)
Q Consensus 133 EeKR~RRkiKNRESArRSR~RKQeyv--------------------------------eELE~kV~~Le~EN~~Lkkel~ 180 (488)
..++.|+++++|......=+||--.+ --|..++..|+.+...+.++++
T Consensus 120 ~~~e~r~~lk~RI~rSEAFKRKllE~kYD~~mL~qLr~g~~~~~~~~~~~~~~~~D~v~LLqkk~~~l~~~l~~~~~eL~ 199 (323)
T PF08537_consen 120 SGREERRLLKDRILRSEAFKRKLLEKKYDKRMLEQLRRGRSKNRHNRPRNPSSNSDRVILLQKKIDELEERLNDLEKELE 199 (323)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677778877776666663322 1233444455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011345 181 LAVKEYQSLETINKHLKAQVA 201 (488)
Q Consensus 181 ~L~qe~~~LesEN~~LRaqL~ 201 (488)
.+++.+.-....|.-|..-|.
T Consensus 200 ~~~k~L~faqekn~LlqslLd 220 (323)
T PF08537_consen 200 ITKKDLKFAQEKNALLQSLLD 220 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 555555555555665555443
No 285
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=34.16 E-value=3.2e+02 Score=30.66 Aligned_cols=39 Identities=13% Similarity=0.256 Sum_probs=20.3
Q ss_pred HHHhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 011345 140 ILANRESARQTIRRRQ----ALCEELTRKAADLSQENESLKRE 178 (488)
Q Consensus 140 kiKNRESArRSR~RKQ----eyveELE~kV~~Le~EN~~Lkke 178 (488)
...|-+++..+-.||. ..+++++.+...++.+|..|.+.
T Consensus 369 ~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~kn 411 (493)
T KOG0804|consen 369 ESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKN 411 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555544443 34455556666666666655443
No 286
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=34.15 E-value=4.7e+02 Score=25.78 Aligned_cols=48 Identities=21% Similarity=0.269 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 155 QALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
-...+.++.++..|.........+...+.+.+..|+.++..|...|..
T Consensus 168 ~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~ 215 (237)
T PF00261_consen 168 SEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEK 215 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334466666666666666666666666666666666666666666554
No 287
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=34.15 E-value=57 Score=33.24 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 182 AVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 182 L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
..+++.+||.|...||+||+++..
T Consensus 120 AlqKIsALEdELs~LRaQIA~IV~ 143 (253)
T PF05308_consen 120 ALQKISALEDELSRLRAQIAKIVA 143 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667788899999999999975
No 288
>PRK14127 cell division protein GpsB; Provisional
Probab=34.11 E-value=1.2e+02 Score=27.54 Aligned_cols=30 Identities=27% Similarity=0.307 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 171 ENESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 171 EN~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
+.+.|.+++..|+.++..|+.+...++.++
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444444443333333333333333
No 289
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=34.06 E-value=40 Score=25.92 Aligned_cols=41 Identities=24% Similarity=0.193 Sum_probs=10.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 138 CRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREK 179 (488)
Q Consensus 138 RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel 179 (488)
++...|++=|+..-... ..+.+||.++..|..||-.|+.++
T Consensus 4 k~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 4 KYSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ---------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHHHh
Confidence 34444555444433322 346677777777777777776654
No 290
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=33.98 E-value=1.4e+02 Score=33.85 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVA 201 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~ 201 (488)
..+++|..++..++.+...|..++..+..+......++..|.+++.
T Consensus 335 ~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 335 EQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555655555555555555555555555543
No 291
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=33.81 E-value=1.5e+02 Score=25.94 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 011345 166 ADLSQENESLKREKELAVKEYQSL--ETINKHLKAQVAK 202 (488)
Q Consensus 166 ~~Le~EN~~Lkkel~~L~qe~~~L--esEN~~LRaqL~k 202 (488)
..++.+|.+|.++++.|..+.... +.+|...+++-.+
T Consensus 26 ~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee 64 (87)
T PF10883_consen 26 KKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNEE 64 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 333334444444444443333332 3356666655443
No 292
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.69 E-value=2.1e+02 Score=24.55 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREK 179 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel 179 (488)
..++.|..++..|..+|..|+.++
T Consensus 75 ~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 75 EQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777788888888888777665
No 293
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=33.68 E-value=4.7e+02 Score=29.95 Aligned_cols=49 Identities=16% Similarity=0.123 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 155 QALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
++.+..+..+...+..||..|..++..++++...+.-|+..|.+.|+..
T Consensus 218 ~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~ 266 (596)
T KOG4360|consen 218 QEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAY 266 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555666667777777777777777776666666666555443
No 294
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=33.63 E-value=2.2e+02 Score=31.63 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 155 QALCEELTRKAADLSQENESLKREK 179 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkkel 179 (488)
++.+.++|.++..|+.||..|..+.
T Consensus 47 ~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 47 KAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888887776653
No 295
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=33.59 E-value=1.8e+02 Score=32.36 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 153 RRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 153 RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
.|+..++.+...+..++.....++.++..++.++..|..+=+.|+.++.+
T Consensus 443 qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 443 QKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34445566667777777777777777777777777777777777777766
No 296
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=33.47 E-value=3.1e+02 Score=31.81 Aligned_cols=12 Identities=8% Similarity=0.102 Sum_probs=5.9
Q ss_pred ccccceecCCCC
Q 011345 259 EMQNAVTFPSNI 270 (488)
Q Consensus 259 ~~~~~~~~Ps~~ 270 (488)
+...++.+|..+
T Consensus 567 ~~~raii~~~~~ 578 (652)
T COG2433 567 KKPRAIIRGEEM 578 (652)
T ss_pred cCcceEEccCcc
Confidence 334455555554
No 297
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=33.45 E-value=1.5e+02 Score=31.63 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 153 RRQALCEELTRKAADLSQENESLKREKEL 181 (488)
Q Consensus 153 RKQeyveELE~kV~~Le~EN~~Lkkel~~ 181 (488)
.-.+|+-+||.+.-.|-.+|.+|++.+..
T Consensus 102 QTa~yI~~Le~~Kt~ll~qn~elKr~~~E 130 (373)
T KOG0561|consen 102 QTADYIHQLEGHKTELLPQNGELKRLKLE 130 (373)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHhh
Confidence 34578899998888888889888887654
No 298
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=33.37 E-value=85 Score=31.04 Aligned_cols=36 Identities=31% Similarity=0.381 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 168 LSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 168 Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
|+.+-+.|+.++..|..++..|..++..|++++..+
T Consensus 110 lE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~ 145 (198)
T KOG0483|consen 110 LEKDYESLKRQLESLRSENDRLQSEVQELVAELSSL 145 (198)
T ss_pred hhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhh
Confidence 344444555555555566666666666666666654
No 299
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.37 E-value=3.6e+02 Score=32.47 Aligned_cols=14 Identities=21% Similarity=0.302 Sum_probs=9.0
Q ss_pred cCccccCCCCCCCC
Q 011345 302 CPWFFPLHDSGSGF 315 (488)
Q Consensus 302 Cpw~fp~p~~~~g~ 315 (488)
-+|.-|.|.-+||+
T Consensus 623 ~~~~~~~~et~~~~ 636 (1118)
T KOG1029|consen 623 AGAPAPWPETTNGF 636 (1118)
T ss_pred CCCCcccccccccC
Confidence 36666667666663
No 300
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=33.32 E-value=1.7e+02 Score=30.76 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011345 160 ELTRKAADLSQENESLKREK 179 (488)
Q Consensus 160 ELE~kV~~Le~EN~~Lkkel 179 (488)
.||.+...|+.+|++|+-++
T Consensus 56 q~etrnrdl~t~nqrl~~E~ 75 (333)
T KOG1853|consen 56 QLETRNRDLETRNQRLTTEQ 75 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444333
No 301
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=33.23 E-value=1.2e+02 Score=31.23 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETI 192 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesE 192 (488)
.-.+.|+.++..|+.||+.|+.++..++.++.....-
T Consensus 32 ~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f 68 (308)
T PF11382_consen 32 NLIDSLEDQFDSLREENDELRAELDALQAQLNAADQF 68 (308)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888888888877776655544443
No 302
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=33.18 E-value=1.6e+02 Score=32.69 Aligned_cols=64 Identities=19% Similarity=0.119 Sum_probs=42.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 142 ANRESARQTIRRRQALCEELTRKAADLSQENESLKREKE----------LAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 142 KNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~----------~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
+||+-|.-|-+-.-..+-+++.++..++.+-..|++-+. .|+.++.....+...|+++.+.|+.
T Consensus 399 kt~e~ag~s~Ktl~~~lv~~edeirrlkrdm~klkq~l~RN~gd~v~s~~lqe~L~ev~~~Lasl~aqea~ls~ 472 (486)
T KOG2185|consen 399 KTRENAGPSDKTLGAALVEYEDEIRRLKRDMLKLKQMLNRNKGDLVVSEALQERLKEVRKALASLLAQEAALSN 472 (486)
T ss_pred hhhhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 666666666654555666777777777777776665543 4666777777777777777777654
No 303
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=33.09 E-value=1.4e+02 Score=28.94 Aligned_cols=41 Identities=15% Similarity=0.228 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 159 EELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
.=.|.+++.|+.+|..|+.+++.|.. ...+|..+-.++..+
T Consensus 43 SL~erQ~~~LR~~~~~L~~~l~~Li~----~Ar~Ne~~~~~~~~l 83 (225)
T PF04340_consen 43 SLVERQLERLRERNRQLEEQLEELIE----NARENEAIFQRLHRL 83 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 34455555555566555555555433 233444444444443
No 304
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=33.05 E-value=2.6e+02 Score=25.69 Aligned_cols=6 Identities=33% Similarity=0.678 Sum_probs=2.5
Q ss_pred cccccc
Q 011345 32 TATIWG 37 (488)
Q Consensus 32 ~~~~wg 37 (488)
+.|.|.
T Consensus 16 t~g~w~ 21 (139)
T PF13935_consen 16 TPGEWR 21 (139)
T ss_pred ccCcHH
Confidence 334444
No 305
>PRK09343 prefoldin subunit beta; Provisional
Probab=32.77 E-value=1.7e+02 Score=26.33 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 160 ELTRKAADLSQENESLKREKELAVKEY 186 (488)
Q Consensus 160 ELE~kV~~Le~EN~~Lkkel~~L~qe~ 186 (488)
+|+.+++.++.+...|.++...|++++
T Consensus 75 ~l~~r~E~ie~~ik~lekq~~~l~~~l 101 (121)
T PRK09343 75 ELKERKELLELRSRTLEKQEKKLREKL 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 306
>PF06465 DUF1087: Domain of Unknown Function (DUF1087); InterPro: IPR009463 This is a group of proteins of unknown function.
Probab=32.46 E-value=17 Score=30.35 Aligned_cols=15 Identities=53% Similarity=0.745 Sum_probs=11.8
Q ss_pred cccccCcccccccccC
Q 011345 35 IWGCKGKRVRKRVKTE 50 (488)
Q Consensus 35 ~wg~kgkr~~kr~~~e 50 (488)
.-| ||||.||.|..-
T Consensus 45 ~LG-KGKR~RKqV~y~ 59 (66)
T PF06465_consen 45 ALG-KGKRSRKQVNYA 59 (66)
T ss_pred Hhc-cccccccccccc
Confidence 345 999999999753
No 307
>PF14282 FlxA: FlxA-like protein
Probab=32.43 E-value=2e+02 Score=25.34 Aligned_cols=52 Identities=21% Similarity=0.347 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 011345 156 ALCEELTRKAADLSQENESLKR----EKELAVKEYQSLETINKHLKAQVAKVMKSE 207 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkk----el~~L~qe~~~LesEN~~LRaqL~kL~a~~ 207 (488)
..++.|+.++..|..+...|.. -.+....+...|..+-..|.++|..|+...
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666655 123445566666666666666666665443
No 308
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=32.38 E-value=3.7e+02 Score=33.04 Aligned_cols=46 Identities=35% Similarity=0.371 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
.+.|.-+++.|+.+...++.+++.+..++..|..++..|++.+.+.
T Consensus 817 ~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~ 862 (1174)
T KOG0933|consen 817 YERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKV 862 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3455555555666666666666666666666666666665555443
No 309
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=32.33 E-value=90 Score=28.37 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011345 164 KAADLSQENESLKREKELAVKEY 186 (488)
Q Consensus 164 kV~~Le~EN~~Lkkel~~L~qe~ 186 (488)
+...|++||+-|+-+++.|..-+
T Consensus 80 k~~~LeEENNlLklKievLLDML 102 (108)
T cd07429 80 KNQQLEEENNLLKLKIEVLLDML 102 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888887765533
No 310
>PRK15396 murein lipoprotein; Provisional
Probab=32.22 E-value=3e+02 Score=23.73 Aligned_cols=44 Identities=9% Similarity=0.155 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
.+++|..+|..|..+-..|...+..++...+....|-.+-.++|
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~Rl 69 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRL 69 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666665555555533333333
No 311
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=31.92 E-value=87 Score=26.95 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011345 166 ADLSQENESLKREKELAV 183 (488)
Q Consensus 166 ~~Le~EN~~Lkkel~~L~ 183 (488)
..+..||.+|+.+++.|.
T Consensus 3 ~ei~eEn~~Lk~eiqkle 20 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLE 20 (76)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445666666666555543
No 312
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=31.45 E-value=2.5e+02 Score=26.62 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 172 NESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 172 N~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
...|...+..|.++...+..+++.+-++.
T Consensus 110 ~~~l~~~l~~l~~~~~~l~~~~q~~~q~~ 138 (145)
T COG1730 110 IEKLQQALAELAQRIEQLEQEAQQLQQKQ 138 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444555544433
No 313
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=31.39 E-value=2e+02 Score=24.41 Aligned_cols=32 Identities=31% Similarity=0.426 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 161 LTRKAADLSQENESLKREKELAVKEYQSLETI 192 (488)
Q Consensus 161 LE~kV~~Le~EN~~Lkkel~~L~qe~~~LesE 192 (488)
|...|+.|..|++.|..++..+++++..+..+
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~ 32 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEE 32 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666665555555544443
No 314
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=31.06 E-value=7e+02 Score=26.97 Aligned_cols=37 Identities=24% Similarity=0.246 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 167 DLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 167 ~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
.|..+...|++++..|.+++..++.+-..+...|..+
T Consensus 70 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~ 106 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAELDELEAELEELLLRIPNL 106 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3444444455555555555555555444444444444
No 315
>PRK14161 heat shock protein GrpE; Provisional
Probab=30.99 E-value=2.1e+02 Score=27.75 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKR 177 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkk 177 (488)
+.+++|..++..+.++.+.+++
T Consensus 33 ~e~~elkd~~lR~~AefeN~rk 54 (178)
T PRK14161 33 AEIEELKDKLIRTTAEIDNTRK 54 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334443333333
No 316
>PRK12705 hypothetical protein; Provisional
Probab=30.88 E-value=4.7e+02 Score=29.42 Aligned_cols=14 Identities=29% Similarity=0.404 Sum_probs=7.0
Q ss_pred HHHHHHHhhhhhhc
Q 011345 465 EARKRRKELTKLKN 478 (488)
Q Consensus 465 earkrrkeltklkn 478 (488)
+..+|-++|.+|.+
T Consensus 428 ~yv~rL~~le~i~~ 441 (508)
T PRK12705 428 EYVQRLEELEQIAE 441 (508)
T ss_pred HHHHHHHHHHHHhh
Confidence 33455555555554
No 317
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=30.70 E-value=1e+02 Score=28.23 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESL 175 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~L 175 (488)
+.+++|+.++..|+.+.+.+
T Consensus 112 ~~l~~L~~~i~~L~~~~~~~ 131 (134)
T PF07047_consen 112 ERLEELEERIEELEEQVEKQ 131 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555443
No 318
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=30.69 E-value=4.6e+02 Score=25.96 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 149 QTIRRRQALCEELTRKAADLSQEN----ESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 149 RSR~RKQeyveELE~kV~~Le~EN----~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
.-|.+|+--.+.+..++..|.... ..|.+--+.|....+..+.-|..|+.+|+.|.+
T Consensus 116 kKR~~KllDYD~~~~k~~kl~~K~~kd~~kL~kae~el~~a~~~Ye~lN~~Lk~ELP~l~~ 176 (224)
T cd07591 116 KKRNHKLLDYDAARAKVRKLIDKPSEDPTKLPRAEKELDEAKEVYETLNDQLKTELPQLVD 176 (224)
T ss_pred HHHHhhHhhHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 345667777777777777775432 344444444555555666779999999999864
No 319
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=30.66 E-value=3.6e+02 Score=33.16 Aligned_cols=62 Identities=23% Similarity=0.267 Sum_probs=34.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 135 RRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHL 196 (488)
Q Consensus 135 KR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~L 196 (488)
|..+-.|.||+=-..=-.++-.-++++-.+.-.|+.++.+|..+++.|..++..+...+..|
T Consensus 373 ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~el 434 (1195)
T KOG4643|consen 373 RALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAEL 434 (1195)
T ss_pred HHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHH
Confidence 34555566665444444444445566666666666666666666555555555444444443
No 320
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=30.65 E-value=5.7e+02 Score=25.72 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 178 EKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 178 el~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
++..+......|..+...-..+...|+
T Consensus 83 e~~e~~~~i~~l~ee~~~ke~Ea~~lq 109 (246)
T PF00769_consen 83 ELREAEAEIARLEEESERKEEEAEELQ 109 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444443
No 321
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=30.52 E-value=2.5e+02 Score=32.61 Aligned_cols=10 Identities=50% Similarity=0.544 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 011345 9 AEALADLAHL 18 (488)
Q Consensus 9 ae~ladla~l 18 (488)
|||---+-||
T Consensus 458 ~eAtkCI~hL 467 (940)
T KOG4661|consen 458 AEATKCIEHL 467 (940)
T ss_pred HHHHHHHHHh
Confidence 3443334444
No 322
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=30.47 E-value=2.2e+02 Score=25.53 Aligned_cols=14 Identities=14% Similarity=0.169 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 011345 164 KAADLSQENESLKR 177 (488)
Q Consensus 164 kV~~Le~EN~~Lkk 177 (488)
.+..+..+...++.
T Consensus 109 ~~~~l~~~l~~~~~ 122 (140)
T PRK03947 109 ALEKLEEALQKLAS 122 (140)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 323
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=30.31 E-value=4.5e+02 Score=24.88 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 134 ERRVCRILANRESARQTIRRRQALCEELTRK-------AADLSQENESLKREKELAVKEYQSL 189 (488)
Q Consensus 134 eKR~RRkiKNRESArRSR~RKQeyveELE~k-------V~~Le~EN~~Lkkel~~L~qe~~~L 189 (488)
.+++.+++.+-+.|...-.||++..+.|... +..++.+...+..++..++++++.+
T Consensus 127 l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~i 189 (236)
T PF09325_consen 127 LNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEI 189 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555566666666666555433 4445555555555555554444433
No 324
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=30.22 E-value=2.9e+02 Score=25.31 Aligned_cols=23 Identities=22% Similarity=0.279 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKRE 178 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkke 178 (488)
+.++.|+.++..++.+-..+..+
T Consensus 145 ~ki~~l~~~i~~~e~~~~~~~~~ 167 (218)
T cd07596 145 AKVEELEEELEEAESALEEARKR 167 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555554444444444433
No 325
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=30.21 E-value=3.4e+02 Score=26.97 Aligned_cols=32 Identities=31% Similarity=0.301 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 011345 172 NESLKREKELAVKEYQSLETINK---HLKAQVAKV 203 (488)
Q Consensus 172 N~~Lkkel~~L~qe~~~LesEN~---~LRaqL~kL 203 (488)
...|.++++.|++++..|+.++. .|+++..+|
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L 105 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARL 105 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666555 334444444
No 326
>PRK00736 hypothetical protein; Provisional
Probab=30.17 E-value=2.8e+02 Score=22.81 Aligned_cols=44 Identities=5% Similarity=0.065 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 161 LTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 161 LE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
++.++..|+....-+..-|+.|.+.+..-..+...|..++..|.
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~ 46 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALT 46 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666665556666666666554
No 327
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=30.14 E-value=1.8e+02 Score=30.50 Aligned_cols=61 Identities=13% Similarity=0.061 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 011345 147 ARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMKSEVGE 210 (488)
Q Consensus 147 ArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a~~~~~ 210 (488)
.-|-|.|.++.+..= -..+.+...+|..++..|.-++..|..+-..|+.++.++.+.++..
T Consensus 207 leRkrlrnreaa~Kc---r~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~h 267 (279)
T KOG0837|consen 207 LERKRLRNREAASKC---RKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEH 267 (279)
T ss_pred HHHHHhhhHHHHHHH---HHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544332 2222334566777777777777777777777777777776555443
No 328
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=30.09 E-value=2.2e+02 Score=31.25 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 154 RQALCEELTRKAADLSQENESLKREKELAVKEY 186 (488)
Q Consensus 154 KQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~ 186 (488)
..+.+-|++.+-+.|+..|..|..+++.|+.++
T Consensus 288 ~~q~~~E~~~rqk~le~~n~~L~~rieeLk~~~ 320 (411)
T KOG1318|consen 288 TLQRARELENRQKKLESTNQELALRIEELKSEA 320 (411)
T ss_pred HHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHH
Confidence 334455566666666666666655555554433
No 329
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=30.03 E-value=2.3e+02 Score=26.11 Aligned_cols=57 Identities=12% Similarity=-0.010 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 011345 155 QALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMKSEVGET 211 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a~~~~~~ 211 (488)
...++.|+.++...+...+.-...+..|++.+..+..+++.+...+..+........
T Consensus 40 ~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~~~~~ 96 (160)
T PF13094_consen 40 LHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQLDDSGV 96 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhccccccc
No 330
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=30.02 E-value=5.4e+02 Score=29.02 Aligned_cols=48 Identities=13% Similarity=0.139 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
+.+.+|..++..++.+...+..+++.+.+++..+..+...|+.++.++
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555555555555555555555544444
No 331
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=29.89 E-value=2.3e+02 Score=33.42 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=22.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 141 LANRESARQTIRRRQALCEELTRKAADLSQ 170 (488)
Q Consensus 141 iKNRESArRSR~RKQeyveELE~kV~~Le~ 170 (488)
++-=+=|+.++..|++|++||.=++.-|+.
T Consensus 416 l~ksq~~kl~k~q~k~y~de~dyr~kl~~k 445 (763)
T TIGR00993 416 LTKAQMAKLSKEQRKAYLEEYDYRVKLLQK 445 (763)
T ss_pred ccHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344456788899999999999988775543
No 332
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=29.87 E-value=7.2e+02 Score=27.77 Aligned_cols=30 Identities=17% Similarity=0.299 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 167 DLSQENESLKREKELAVKEYQSLETINKHL 196 (488)
Q Consensus 167 ~Le~EN~~Lkkel~~L~qe~~~LesEN~~L 196 (488)
.+..+-..|+.++..|..+...|+.+-..|
T Consensus 141 r~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl 170 (499)
T COG4372 141 RLTKQAQDLQTRLKTLAEQRRQLEAQAQSL 170 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444443333
No 333
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=29.80 E-value=5.3e+02 Score=28.78 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 159 EELTRKAADLSQENESLKREKELAVKEY 186 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~qe~ 186 (488)
+-+..++...+.+..+|++++..|..++
T Consensus 44 ~ai~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 44 RAIKAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555554444433
No 334
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=29.79 E-value=2.6e+02 Score=24.09 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
+..|+.+++.++.+...|..++ ..+..+-..|+.+|.++
T Consensus 65 ~~~Le~~~e~le~~i~~l~~~~-------~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 65 RTELKERLETIELRIKRLERQE-------EDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443 34444444555555544
No 335
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=29.75 E-value=2.3e+02 Score=30.74 Aligned_cols=49 Identities=22% Similarity=0.207 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 155 QALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
|..++|++..++.-..||..+.++++.++.-+..|...-..|++.|...
T Consensus 153 KD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QR 201 (405)
T KOG2010|consen 153 KDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQR 201 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888999999999999988888888888888877653
No 336
>PRK10722 hypothetical protein; Provisional
Probab=29.68 E-value=1.9e+02 Score=29.76 Aligned_cols=62 Identities=16% Similarity=0.321 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 133 EERRVCRILANRES------ARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHL 196 (488)
Q Consensus 133 EeKR~RRkiKNRES------ArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~L 196 (488)
..|-.-++.+.+.- +.|.|-.| ...+-+.++..|.+++..|+.++..+.++++.|...-+.|
T Consensus 142 ~lrPL~qlwr~~Q~l~l~LaeEr~Ry~r--LQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIERqL 209 (247)
T PRK10722 142 QVRPLYQLWRDGQALQLALAEERQRYQK--LQQSSDSELDALRQQQQRLQYQLELTTRKLENLTDIERQL 209 (247)
T ss_pred hhhHHHHHHHHhhHHHHhHHHHHHHHHH--HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555533 33333333 2344468888888888888888888888888877766665
No 337
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=29.65 E-value=2.4e+02 Score=27.97 Aligned_cols=57 Identities=12% Similarity=0.207 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 149 QTIRRRQALCEELTRKAADLSQE----NESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 149 RSR~RKQeyveELE~kV~~Le~E----N~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
+-|.+|+.-++....+++.|... -..|.+.-+.|...-+..+.-|..|+.+|++|.+
T Consensus 111 ~KR~~KllDYDr~r~~~~kL~~K~~kde~KL~kae~el~~Ak~~Ye~lN~~L~~ELP~L~~ 171 (211)
T cd07588 111 AKRGRKLVDYDSARHNLEALKAKKKVDDQKLTKAEEELQQAKKVYEELNTELHEELPALYD 171 (211)
T ss_pred HHHhhHHHhHHHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34567777777777777777643 2334444445555555666779999999999975
No 338
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=29.31 E-value=1.2e+02 Score=31.22 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 173 ESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 173 ~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
+.|+.++..++.++..++.+...|++++.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (364)
T TIGR01242 9 RKLEDEKRSLEKEKIRLERELERLRSEIERLRS 41 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333444444444444555566666667766654
No 339
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=29.28 E-value=5.5e+02 Score=25.09 Aligned_cols=12 Identities=17% Similarity=0.185 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 011345 186 YQSLETINKHLK 197 (488)
Q Consensus 186 ~~~LesEN~~LR 197 (488)
+..|.-++..|.
T Consensus 102 l~~Lk~e~evL~ 113 (201)
T PF13851_consen 102 LKDLKWEHEVLE 113 (201)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 340
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=29.10 E-value=2e+02 Score=33.69 Aligned_cols=49 Identities=29% Similarity=0.413 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMKS 206 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a~ 206 (488)
.+.||.+...|+.|...++-+=..|.+.|..|+.||-.|..++.-|-..
T Consensus 71 ~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~s 119 (717)
T PF09730_consen 71 CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQS 119 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666666666677888999999999999999988655
No 341
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=28.86 E-value=2.7e+02 Score=24.86 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 180 ELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 180 ~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
...+++...++..|..|+.++...
T Consensus 40 a~ar~e~~~~e~k~~~le~~l~e~ 63 (100)
T PF06428_consen 40 ADARRERAALEEKNEQLEKQLKEK 63 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677777777776654
No 342
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.86 E-value=3.6e+02 Score=29.27 Aligned_cols=12 Identities=17% Similarity=0.169 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 011345 11 ALADLAHLAMIE 22 (488)
Q Consensus 11 ~ladla~lam~~ 22 (488)
-|.+|.+-.|-.
T Consensus 123 dLv~Liq~l~a~ 134 (365)
T KOG2391|consen 123 DLVGLIQELIAA 134 (365)
T ss_pred hHHHHHHHHHHH
Confidence 355566555543
No 343
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=28.85 E-value=1.3e+02 Score=33.52 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 168 LSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 168 Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
|..+|..|..++..|.+.+.....+-..|+++|.+|..
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 43 (512)
T TIGR03689 6 LQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQ 43 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33344444444444455555566677788888888854
No 344
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=28.39 E-value=4.6e+02 Score=32.09 Aligned_cols=29 Identities=34% Similarity=0.330 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 174 SLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 174 ~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
.|+.+++.++++++.|+.+-..||++++.
T Consensus 329 sLQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 329 SLQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555666666666666666666665554
No 345
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.36 E-value=2e+02 Score=34.39 Aligned_cols=53 Identities=25% Similarity=0.288 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 151 IRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 151 R~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
..+=+..+.+|..+.+.|++.+.+|+.+++.|..+++...++-..|+.++.-|
T Consensus 659 ~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~L 711 (970)
T KOG0946|consen 659 QQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLL 711 (970)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444444443
No 346
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=28.24 E-value=5.4e+02 Score=32.24 Aligned_cols=44 Identities=11% Similarity=0.130 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVA 201 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~ 201 (488)
..+.+.++...+.+...|..++..+++++..+...|..++..+.
T Consensus 496 ~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~ 539 (1317)
T KOG0612|consen 496 QKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLE 539 (1317)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555555555555555555555555555533333
No 347
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=28.17 E-value=2.6e+02 Score=31.85 Aligned_cols=8 Identities=25% Similarity=0.858 Sum_probs=3.5
Q ss_pred cccccccC
Q 011345 33 ATIWGCKG 40 (488)
Q Consensus 33 ~~~wg~kg 40 (488)
...|-+.|
T Consensus 230 ~~e~~~~g 237 (594)
T PF05667_consen 230 ENEWNSQG 237 (594)
T ss_pred hhcccccc
Confidence 34454443
No 348
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=28.08 E-value=2.5e+02 Score=23.43 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 163 RKAADLSQENESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 163 ~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
..+..|+..+..+..++..|..++..++.+-..|+..+
T Consensus 33 ~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 33 NTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444444544444443
No 349
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=28.07 E-value=4.7e+02 Score=25.70 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011345 187 QSLETINKHLKAQVAKV 203 (488)
Q Consensus 187 ~~LesEN~~LRaqL~kL 203 (488)
..++.+...|+.+|.+.
T Consensus 156 ~e~~~~l~~l~~ei~~~ 172 (176)
T PF12999_consen 156 EELEKKLEELEKEIQAA 172 (176)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444445555555443
No 350
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=27.98 E-value=4.5e+02 Score=25.17 Aligned_cols=44 Identities=23% Similarity=0.273 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVA 201 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~ 201 (488)
+..|+..+..+...-..|+..+..|..++..+..+-..|+++..
T Consensus 100 ~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~ 143 (221)
T PF04012_consen 100 AERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN 143 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555666666666666666555555555443
No 351
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=27.93 E-value=2.8e+02 Score=31.97 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=11.5
Q ss_pred hhhhhccccccccccccccc
Q 011345 77 VISDQQRDQTACGNILIKPA 96 (488)
Q Consensus 77 ~~~~~~~~~p~s~~~v~~~~ 96 (488)
-+-.|.+++.|-+|+.++-.
T Consensus 45 ~V~s~rtV~~iRgNl~~~~~ 64 (632)
T PF14817_consen 45 HVRSQRTVRKIRGNLLWYGH 64 (632)
T ss_pred HcCcHhHHHHHHcceeeccc
Confidence 34456666677777555443
No 352
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=27.88 E-value=2.1e+02 Score=29.12 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 155 QALCEELTRKAADLSQENESLKREKELAV 183 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkkel~~L~ 183 (488)
+..+..|..+|+.|+.+|-+|-.++.-|+
T Consensus 106 ~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 106 QQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777777777777777777776654
No 353
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=27.75 E-value=2.7e+02 Score=29.67 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 155 QALCEELTRKAADLSQENESLKRE 178 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkke 178 (488)
.+|++.|+.++..|+.+.+.|..+
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~ 264 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEK 264 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666665554
No 354
>PHA03011 hypothetical protein; Provisional
Probab=27.57 E-value=3.3e+02 Score=25.07 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 155 QALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
++.+++|-.+...|..|-+.+..++..+..-.+.-..+-.-|++++.+|
T Consensus 63 ~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkL 111 (120)
T PHA03011 63 IEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKL 111 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 3556777777777777777777776666655555455555566666555
No 355
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=27.36 E-value=3.8e+02 Score=22.92 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQ 187 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~ 187 (488)
+..|..+-..+.-|+-.|++++...++++.
T Consensus 10 L~~lQnEWDa~mLE~f~LRk~l~~~rqELs 39 (70)
T PF08606_consen 10 LSTLQNEWDALMLENFTLRKQLDQTRQELS 39 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666777777777766666554
No 356
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=27.36 E-value=7.3e+02 Score=28.02 Aligned_cols=21 Identities=29% Similarity=0.367 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKRE 178 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkke 178 (488)
+++|+.++..+..+-..+..+
T Consensus 211 ~~~le~el~~l~~~~e~l~~~ 231 (650)
T TIGR03185 211 IEALEAELKEQSEKYEDLAQE 231 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333433333333333333
No 357
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=27.35 E-value=6.2e+02 Score=27.63 Aligned_cols=43 Identities=16% Similarity=0.077 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 011345 165 AADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMKSE 207 (488)
Q Consensus 165 V~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a~~ 207 (488)
+..+.+-...+..++..+..+...++.+-..|++++.+|+...
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 168 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNEL 168 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666777888888888888888888888888886543
No 358
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=27.20 E-value=3.6e+02 Score=27.45 Aligned_cols=57 Identities=16% Similarity=0.220 Sum_probs=29.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 137 VCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 137 ~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
+|-.++-|+.+|.--.+|.+|+..+ ..+...+..+++.++.+.+.. |..||+++.+-
T Consensus 151 lK~vlk~R~~~Q~~le~k~e~l~k~-------~~dr~~~~~ev~~~e~kve~a---~~~~k~e~~Rf 207 (243)
T cd07666 151 LMGVIKRRDQIQAELDSKVEALANK-------KADRDLLKEEIEKLEDKVECA---NNALKADWERW 207 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-------hhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 3445555655555555555554443 333445555555555444444 55566666554
No 359
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=27.19 E-value=5.2e+02 Score=32.29 Aligned_cols=63 Identities=16% Similarity=0.245 Sum_probs=41.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 142 ANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 142 KNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
+--++.+.+-.+++..++.|+..+..++.|.....+++..+.++...+...-..|++++..+-
T Consensus 528 ~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~k 590 (1293)
T KOG0996|consen 528 GKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAK 590 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445556666777777777777777777777766666666666666666666666666653
No 360
>PF13879 KIAA1430: KIAA1430 homologue
Probab=27.12 E-value=3.3e+02 Score=22.54 Aligned_cols=18 Identities=17% Similarity=0.359 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011345 184 KEYQSLETINKHLKAQVA 201 (488)
Q Consensus 184 qe~~~LesEN~~LRaqL~ 201 (488)
.+...+..||..|..+|+
T Consensus 80 ~e~~kI~~EN~~l~~RL~ 97 (98)
T PF13879_consen 80 REQRKIDRENQKLLKRLQ 97 (98)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 345556666666666553
No 361
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=26.95 E-value=1.6e+02 Score=26.92 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 154 RQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKH 195 (488)
Q Consensus 154 KQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~ 195 (488)
=|.-+++|..+|...+.||-+|+.+++.|-+=++.|.+.-.+
T Consensus 68 LQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSaSSV 109 (120)
T KOG3650|consen 68 LQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSV 109 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhh
Confidence 345678888888888888888888888877766666655443
No 362
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=26.91 E-value=3.4e+02 Score=21.98 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 168 LSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 168 Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
|+.=|..|..+. .|.++...|+.+|.+|+.-|.+
T Consensus 25 l~rY~~vL~~R~-~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 25 LKRYNKVLLDRA-ALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444 4566778888899999887765
No 363
>PF10252 PP28: Casein kinase substrate phosphoprotein PP28; InterPro: IPR019380 This domain is a region of 70 residues conserved in proteins from plants to humans and contains a serine/arginine rich motif. In rats the full protein is a casein kinase substrate, and this region contains phosphorylation sites for both cAMP-dependent protein kinase and casein kinase II [].
Probab=26.81 E-value=47 Score=28.92 Aligned_cols=17 Identities=53% Similarity=0.622 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhC
Q 011345 8 AAEALADLAHLAMIENG 24 (488)
Q Consensus 8 aae~ladla~lam~~~~ 24 (488)
.-|+-||||+||+++-+
T Consensus 51 T~eakaDLaRLAlIRkq 67 (82)
T PF10252_consen 51 TDEAKADLARLALIRKQ 67 (82)
T ss_pred hHHHHHhHHHHHHHHHH
Confidence 35889999999998753
No 364
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=26.76 E-value=3.9e+02 Score=23.32 Aligned_cols=48 Identities=10% Similarity=0.167 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
+.+++|...|..|......|...+..+..+.+....++.+-++++-+.
T Consensus 25 aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn~ 72 (78)
T COG4238 25 AKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 446777888888888888888888888888888888887777777654
No 365
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=26.64 E-value=2.6e+02 Score=29.31 Aligned_cols=44 Identities=16% Similarity=0.303 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 162 TRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 162 E~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
..++..++.....|++++....++++.+......|+.++..|..
T Consensus 118 kd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre 161 (302)
T PF09738_consen 118 KDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELRE 161 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444555555555556655544
No 366
>PRK14148 heat shock protein GrpE; Provisional
Probab=26.61 E-value=2.1e+02 Score=28.18 Aligned_cols=23 Identities=17% Similarity=0.445 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKRE 178 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkke 178 (488)
+.+++|..++..+.++.+.++++
T Consensus 54 ~e~~elkd~~lR~~Ae~eN~rKR 76 (195)
T PRK14148 54 DSCDQFKDEALRAKAEMENIRKR 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 367
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=26.60 E-value=4.3e+02 Score=26.55 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=8.3
Q ss_pred ceeecccccccccc
Q 011345 230 PLLLYNHHALTPLG 243 (488)
Q Consensus 230 p~ll~n~~pf~~l~ 243 (488)
|-+|+-++||..|+
T Consensus 162 ~~~flsq~~l~~Y~ 175 (256)
T PF14932_consen 162 PPVFLSQMPLEQYL 175 (256)
T ss_pred CCchhhhCCHHHHH
Confidence 33345567777765
No 368
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=26.42 E-value=3.1e+02 Score=23.98 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 159 EELTRKAADLSQENESLKREKELAVK 184 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~q 184 (488)
..|+.+++.++.....|.++...|++
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~ 95 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLRE 95 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444434333333333
No 369
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=26.26 E-value=3.8e+02 Score=27.97 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 011345 188 SLETINKHLKAQVA 201 (488)
Q Consensus 188 ~LesEN~~LRaqL~ 201 (488)
.+..+++.|+.++.
T Consensus 213 ~lr~~~~~l~~el~ 226 (264)
T PF07246_consen 213 GLRNESKWLEHELS 226 (264)
T ss_pred hhHHHHHHHHHHHH
Confidence 33444444444433
No 370
>PRK10963 hypothetical protein; Provisional
Probab=26.17 E-value=2e+02 Score=28.22 Aligned_cols=12 Identities=25% Similarity=-0.031 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 011345 171 ENESLKREKELA 182 (488)
Q Consensus 171 EN~~Lkkel~~L 182 (488)
+|+.+..++..|
T Consensus 69 ~Ne~l~~~~~~l 80 (223)
T PRK10963 69 ANEDLFYRLLPL 80 (223)
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 371
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=26.15 E-value=2.6e+02 Score=29.46 Aligned_cols=35 Identities=26% Similarity=0.254 Sum_probs=18.5
Q ss_pred ecCCcccccccCCCcccccccceeeccCCCCCCCcccC
Q 011345 416 KHDNVLQSDYTGHTKAVSKIANHLVSHPEKKQEPVNYP 453 (488)
Q Consensus 416 k~e~~~~~~~~~~~~~~s~~~~~~~~~~ek~q~~~~~~ 453 (488)
|.|-+.||-++-.-| |+ .-|.-+.|+..-+-..|.
T Consensus 341 ~~~vvy~s~~t~~~k-v~--~eha~awp~~d~d~mscs 375 (389)
T PF06216_consen 341 KEEVVYQSINTRDYK-VT--REHAWAWPCHDSDIMSCS 375 (389)
T ss_pred cccEEEEeccchhhh-hh--HhhcccCCCCCCCcceee
Confidence 344445555555555 32 234456666666666664
No 372
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=26.03 E-value=3.3e+02 Score=23.51 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 159 EELTRKAADLSQENESLKREKELAVKEYQ 187 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~qe~~ 187 (488)
+.|+.++..++.+-..+.+++..++.++.
T Consensus 73 e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 73 ETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555444444444433
No 373
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=25.99 E-value=5.5e+02 Score=27.30 Aligned_cols=48 Identities=27% Similarity=0.223 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhc
Q 011345 158 CEELTRKAADLSQENESLKREKELAV--------------KEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~--------------qe~~~LesEN~~LRaqL~kL~a 205 (488)
+++-..++..|..||..|......|. .++.-|+.++...+.+|.+|.+
T Consensus 55 ~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leq 116 (307)
T PF10481_consen 55 VEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQ 116 (307)
T ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555544433333 2333444555555555555543
No 374
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=25.98 E-value=1.5e+02 Score=34.29 Aligned_cols=35 Identities=23% Similarity=0.155 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 160 ELTRKAADLSQENESLKREKELAVKEYQSLETINKHLK 197 (488)
Q Consensus 160 ELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LR 197 (488)
.++.++..|+.|.-.-+ + ..+++++.|+.||++||
T Consensus 230 s~~e~i~~LQeE~l~tQ--~-kYQreLErlEKENkeLr 264 (980)
T KOG0447|consen 230 SDKEKIDQLQEELLHTQ--L-KYQRILERLEKENKELR 264 (980)
T ss_pred hHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHhhHHHH
Confidence 45666777766543322 2 45677888888999998
No 375
>PRK02224 chromosome segregation protein; Provisional
Probab=25.70 E-value=6.8e+02 Score=28.83 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011345 159 EELTRKAADLSQENESLKREKEL 181 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~ 181 (488)
+.++.++..++.+-..|..++..
T Consensus 663 ~~l~~~l~~~~~~~~~l~~~i~~ 685 (880)
T PRK02224 663 EQVEEKLDELREERDDLQAEIGA 685 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 376
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=25.48 E-value=4.4e+02 Score=30.94 Aligned_cols=66 Identities=21% Similarity=0.249 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 011345 143 NRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMKSEV 208 (488)
Q Consensus 143 NRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a~~~ 208 (488)
+..-+.++...=|..+++.+.++..++.....+..++..+......|+.|+..|+..+..+.....
T Consensus 560 ~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 560 KAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 344466677777888899999999999999999999999999999999999999999988866555
No 377
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=25.41 E-value=5.4e+02 Score=28.75 Aligned_cols=60 Identities=25% Similarity=0.346 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 145 ESARQTIRRRQALCEELTR-----KAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 145 ESArRSR~RKQeyveELE~-----kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
+-|-+-+..=++|++.||. ..+.+..|-+.|..+-..|.+++..++.++..|--++.++.
T Consensus 153 ~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~ 217 (447)
T KOG2751|consen 153 EDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELE 217 (447)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566677788888875 34556666666666666667777777777666666665553
No 378
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=25.41 E-value=2.7e+02 Score=29.64 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 159 EELTRKAADLSQENESLKREKELAVKEYQ 187 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~qe~~ 187 (488)
..|..+.+.|+.+...|..+++.+.....
T Consensus 147 ~~L~~enerL~~e~~~~~~qlE~~v~~K~ 175 (342)
T PF06632_consen 147 EHLQKENERLESEANKLLKQLEKFVNAKE 175 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555554443333
No 379
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=25.37 E-value=2.3e+02 Score=32.28 Aligned_cols=44 Identities=18% Similarity=0.189 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQ 199 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaq 199 (488)
.-...||.+|..+=.+.+.|+..++.+.+++..++.+-..++.+
T Consensus 363 sI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~ 406 (557)
T PF01763_consen 363 SINKCLEGQINNQFDTIEDLKEENQDLEKKLRELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888888887777777777777777666666666655555
No 380
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=25.28 E-value=4.1e+02 Score=30.80 Aligned_cols=16 Identities=6% Similarity=0.212 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhcc
Q 011345 191 TINKHLKAQVAKVMKS 206 (488)
Q Consensus 191 sEN~~LRaqL~kL~a~ 206 (488)
.+|+.|..+++.|-|.
T Consensus 300 ~~r~kL~N~i~eLkGn 315 (670)
T KOG0239|consen 300 EERRKLHNEILELKGN 315 (670)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 6677777777777553
No 381
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=25.24 E-value=8e+02 Score=25.61 Aligned_cols=52 Identities=21% Similarity=0.176 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 154 RQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 154 KQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
-+...+.|..+...+..|+.........|..-|..|..+|+.|+.....+..
T Consensus 48 ~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~ 99 (309)
T PF09728_consen 48 LQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAR 99 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666667777777776666667777777788888888776665543
No 382
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=25.13 E-value=5.3e+02 Score=26.97 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 151 IRRRQALCEELTRKAADLSQENESLKREKELAVKEYQS 188 (488)
Q Consensus 151 R~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~ 188 (488)
+..=|..++||.++-....-...-|+.++..|.++|.+
T Consensus 53 ~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~e 90 (277)
T PF15030_consen 53 QDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRE 90 (277)
T ss_pred HHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHH
Confidence 33334444444444443333444467777666665554
No 383
>PRK14143 heat shock protein GrpE; Provisional
Probab=25.09 E-value=2e+02 Score=29.20 Aligned_cols=26 Identities=12% Similarity=0.281 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 155 QALCEELTRKAADLSQENESLKREKE 180 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkkel~ 180 (488)
++.+++|..++..+.++.+.++++..
T Consensus 80 ~~e~~elkd~~lR~~AdfeN~RKR~~ 105 (238)
T PRK14143 80 KQELEELNSQYMRIAADFDNFRKRTS 105 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555443
No 384
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=25.04 E-value=4e+02 Score=27.69 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKE 180 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~ 180 (488)
.+.+|+.+++.++.+...+..++.
T Consensus 35 ~~~~l~~~~~~~~~~~~~~~~~~~ 58 (378)
T TIGR01554 35 EKEELETDVEKLKEEIKLLEDAIA 58 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444444433
No 385
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=25.01 E-value=6.1e+02 Score=33.22 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 175 LKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 175 Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
|...+..+.+.++.|+..++.|..++..|
T Consensus 1503 l~~~~~e~~k~v~elek~~r~le~e~~el 1531 (1930)
T KOG0161|consen 1503 LEEQKDEGGKRVHELEKEKRRLEQEKEEL 1531 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444433
No 386
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=24.95 E-value=3.1e+02 Score=25.91 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhc
Q 011345 159 EELTRKAADLSQENESLKREKELAV-KEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~-qe~~~LesEN~~LRaqL~kL~a 205 (488)
.+||...-.++..-.+|+.++..+. .+...+..++..|+.++.+|.+
T Consensus 47 ~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~ 94 (177)
T PF07798_consen 47 SDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQ 94 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 387
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=24.94 E-value=7.3e+02 Score=25.07 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQ 199 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaq 199 (488)
+..||.-+..++.+..+....+..+..+|..|..+-..+|.+
T Consensus 62 In~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 62 INTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666666666666666666555
No 388
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=24.84 E-value=2.6e+02 Score=22.47 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 159 EELTRKAADLSQENESLKREKELAV 183 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~ 183 (488)
.....++..|+.||..|+.++..++
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566778888889998888887654
No 389
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=24.81 E-value=3.6e+02 Score=26.27 Aligned_cols=7 Identities=43% Similarity=0.752 Sum_probs=3.9
Q ss_pred CCchhhH
Q 011345 126 NLTEAEK 132 (488)
Q Consensus 126 ~lt~eEk 132 (488)
.|+++|+
T Consensus 25 ~LsEeE~ 31 (162)
T PF04201_consen 25 GLSEEER 31 (162)
T ss_pred cCCHHHH
Confidence 3666554
No 390
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=24.75 E-value=6.6e+02 Score=30.94 Aligned_cols=71 Identities=15% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 132 KEERRVCRILANRESARQT-----------------IRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINK 194 (488)
Q Consensus 132 kEeKR~RRkiKNRESArRS-----------------R~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~ 194 (488)
|+.=-.--+||++..|.|. +.-+.+.+++|+.+++.++.+...++..+......+..|..+-.
T Consensus 407 Kd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~ 486 (1041)
T KOG0243|consen 407 KDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKE 486 (1041)
T ss_pred HHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q 011345 195 HLKAQVAK 202 (488)
Q Consensus 195 ~LRaqL~k 202 (488)
.|+.+|..
T Consensus 487 ~~k~~L~~ 494 (1041)
T KOG0243|consen 487 KLKSKLQN 494 (1041)
T ss_pred HHHHHHHH
No 391
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=24.73 E-value=2.9e+02 Score=26.97 Aligned_cols=38 Identities=29% Similarity=0.434 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 155 QALCEELTRKAADLSQENESLKREKELAVKEYQSLETI 192 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesE 192 (488)
.+++.+|+.+.+.|+.+|..|+.+.....+.+..|...
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~I 147 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVI 147 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888888888888877777664
No 392
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=24.66 E-value=3.9e+02 Score=24.14 Aligned_cols=49 Identities=24% Similarity=0.277 Sum_probs=29.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 140 ILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSL 189 (488)
Q Consensus 140 kiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~L 189 (488)
+-.|+.-|...= -++..++++..++..+-.+-..|..+...+++++..+
T Consensus 40 ~~~n~~lAe~nL-~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 40 LAENEELAEQNL-SLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555554432 2346666777777777777777777777777766666
No 393
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=24.60 E-value=2.7e+02 Score=24.43 Aligned_cols=36 Identities=14% Similarity=0.221 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVKEYQSLETI 192 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesE 192 (488)
.++.|..-+..|++.|..|..++..|.+...+...+
T Consensus 34 ~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e 69 (83)
T PF03670_consen 34 MLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLE 69 (83)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777776666665555
No 394
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=24.46 E-value=6.9e+02 Score=30.92 Aligned_cols=44 Identities=20% Similarity=0.270 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011345 163 RKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMKS 206 (488)
Q Consensus 163 ~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a~ 206 (488)
..+..|.-|-+.|.+++..+++++.+++.+-..|+.++..+.+.
T Consensus 815 ~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~k 858 (1174)
T KOG0933|consen 815 NEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAK 858 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666666666666666666666666666554
No 395
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=24.42 E-value=4.6e+02 Score=28.36 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011345 172 NESLKREKELAVKEYQSLETINKHLKAQVAKVMKS 206 (488)
Q Consensus 172 N~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a~ 206 (488)
.+.|..+...|.+++..|+.+...|.+++..+.-.
T Consensus 68 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T PRK05431 68 AEALIAEVKELKEEIKALEAELDELEAELEELLLR 102 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34588888888889999999988888888876543
No 396
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=24.38 E-value=5.2e+02 Score=23.14 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011345 174 SLKREKELAVKEYQSLETINKHLKAQVAKVMKS 206 (488)
Q Consensus 174 ~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a~ 206 (488)
.+..++..+.++++.|..+|..|++++.+|...
T Consensus 54 ~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 54 QLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 334444444555555555555555555555443
No 397
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=24.29 E-value=5.4e+02 Score=26.80 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETI 192 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesE 192 (488)
..|+.+..++..|+.||..++.+.+.-...+-.+..+
T Consensus 244 ~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~ee 280 (309)
T PF09728_consen 244 KEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEE 280 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3445555555555555555555544433333333333
No 398
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=24.24 E-value=2.3e+02 Score=25.88 Aligned_cols=38 Identities=11% Similarity=0.232 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 011345 155 QALCEELTRKAADLSQENESLKREKELA--VKEYQSLETI 192 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkkel~~L--~qe~~~LesE 192 (488)
...++.++.+-..+..|+..|.++++.| .+++..|++.
T Consensus 41 ~~F~~kV~~qH~~~~~e~r~L~kKi~~l~veRkmr~Les~ 80 (109)
T PF11690_consen 41 YDFIDKVVDQHQRYCDERRKLRKKIQDLRVERKMRALESH 80 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3567788888888888888888888887 6666655554
No 399
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=24.14 E-value=5.5e+02 Score=29.53 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 152 RRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 152 ~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
.=+..|...|......+...+..|..++..|..+.......-..|..+|.+|..
T Consensus 11 ~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~ 64 (617)
T PF15070_consen 11 AERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKN 64 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335567777777777777777777777777777777666666677777766643
No 400
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=24.14 E-value=2e+02 Score=24.41 Aligned_cols=14 Identities=29% Similarity=0.318 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 011345 160 ELTRKAADLSQENE 173 (488)
Q Consensus 160 ELE~kV~~Le~EN~ 173 (488)
+|+.+++.|+.+..
T Consensus 74 ~l~~~l~~l~~~~~ 87 (104)
T PF13600_consen 74 ELEEELEALEDELA 87 (104)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 401
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.07 E-value=6.3e+02 Score=31.08 Aligned_cols=14 Identities=29% Similarity=0.423 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 011345 148 RQTIRRRQALCEEL 161 (488)
Q Consensus 148 rRSR~RKQeyveEL 161 (488)
+..+.+++..+..|
T Consensus 849 ~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 849 RKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333334444
No 402
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=23.97 E-value=3.6e+02 Score=23.22 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 011345 162 TRKAADLSQENESL 175 (488)
Q Consensus 162 E~kV~~Le~EN~~L 175 (488)
+.++..++.+...+
T Consensus 100 ~~~~~~l~~~~~~~ 113 (129)
T cd00890 100 EKQIEKLEKQLEKL 113 (129)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 403
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=23.95 E-value=6.5e+02 Score=24.14 Aligned_cols=46 Identities=20% Similarity=0.147 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 133 EERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKRE 178 (488)
Q Consensus 133 EeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkke 178 (488)
-++|..+...+-..|.+.+..=.+...+.|.++...+.+-..++.+
T Consensus 39 Le~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e 84 (155)
T PRK06569 39 FNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKE 84 (155)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777776666667777777666666666555
No 404
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=23.93 E-value=1.7e+02 Score=30.12 Aligned_cols=40 Identities=28% Similarity=0.366 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 160 ELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQ 199 (488)
Q Consensus 160 ELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaq 199 (488)
+|+.+++.|+.+...++.+...+++++..++.+...|+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (364)
T TIGR01242 3 ELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSP 42 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4555566666666666666666677777777777666544
No 405
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=23.80 E-value=3.6e+02 Score=24.96 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 175 LKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 175 Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
|..+++.|.-++..|+.+-..|+.++.+|
T Consensus 75 L~er~E~Le~ri~tLekQe~~l~e~l~eL 103 (119)
T COG1382 75 LEERKETLELRIKTLEKQEEKLQERLEEL 103 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444443
No 406
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=23.74 E-value=3.9e+02 Score=25.69 Aligned_cols=46 Identities=13% Similarity=0.120 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 155 QALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
+.|++.|+.++..++.++..|...+.....++......-..+..++
T Consensus 78 ~~~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~i 123 (158)
T PF09486_consen 78 RRYRDVLEERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARI 123 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3455555556666665555555555554444444444444443333
No 407
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=23.74 E-value=4.8e+02 Score=26.45 Aligned_cols=40 Identities=18% Similarity=0.259 Sum_probs=25.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 140 ILANRESARQTIRRRQALCEELTRKAADLSQENESLKREK 179 (488)
Q Consensus 140 kiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel 179 (488)
+..-|.+|+.-.+|+++.+..|..-+...-+|..+.+.++
T Consensus 17 LE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~ql 56 (214)
T PF07795_consen 17 LEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQL 56 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777777777766666665444433
No 408
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=23.59 E-value=8.4e+02 Score=28.40 Aligned_cols=29 Identities=21% Similarity=0.317 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEY 186 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~ 186 (488)
+..|..++..|+.+...|..++..+.+++
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~ 271 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREV 271 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333333333333333
No 409
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.51 E-value=4.3e+02 Score=23.79 Aligned_cols=46 Identities=26% Similarity=0.271 Sum_probs=19.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 142 ANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETI 192 (488)
Q Consensus 142 KNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesE 192 (488)
-||.+++-.++-...|--.|. .+.|++.|.+++..+..+......+
T Consensus 57 QNRq~~~dr~ra~~D~~inl~-----ae~ei~~l~~~l~~l~~~~~~~~~~ 102 (108)
T PF06210_consen 57 QNRQAARDRLRAELDYQINLK-----AEQEIERLHRKLDALREKLGELLER 102 (108)
T ss_pred hhHhHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 466666543333333322222 2334455555555544444444333
No 410
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=23.49 E-value=8.5e+02 Score=25.34 Aligned_cols=54 Identities=26% Similarity=0.318 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Q 011345 151 IRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLE-------TINKHLKAQVAKVM 204 (488)
Q Consensus 151 R~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~Le-------sEN~~LRaqL~kL~ 204 (488)
-..-+.+++.|+.....|+...++-+.+++..+++++.|. .|-..|..+|.++.
T Consensus 178 ~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY 238 (267)
T PF10234_consen 178 LQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLY 238 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666655555555555555443 34455555555554
No 411
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.49 E-value=4.3e+02 Score=26.98 Aligned_cols=50 Identities=22% Similarity=0.172 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 150 TIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 150 SR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
.|.-||..+++|...+..-..+..+|..+++.++++. +.-|..+++++..
T Consensus 154 ~RdqkQ~d~E~l~E~l~~rre~~~kLe~~ie~~~~~v---e~f~~~~~~E~~~ 203 (240)
T cd07667 154 KRDQVQAEYEAKLEAVALRKEERPKVPTDVEKCQDRV---ECFNADLKADMER 203 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3444555555554444333333344444454444443 4444445554443
No 412
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=23.43 E-value=4.7e+02 Score=26.26 Aligned_cols=55 Identities=13% Similarity=0.211 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 151 IRRRQALCEELTRKAADLSQE----NESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 151 R~RKQeyveELE~kV~~Le~E----N~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
|.||+.-.+....++..|+.. -.+|.+.-+.|...-+..+.-|..|+.+|++|.+
T Consensus 113 R~~KllDYD~~R~~~~kl~~k~~kD~~KL~kAe~el~~Ak~~ye~lN~~L~~ELP~L~~ 171 (211)
T cd07612 113 RGRKLVDYDSARHHLEALQNAKKKDDAKIAKAEEEFNRAQVVFEDINRELREELPILYD 171 (211)
T ss_pred HHHHHhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555432 2234444445555555666779999999999975
No 413
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=23.25 E-value=2.2e+02 Score=33.05 Aligned_cols=47 Identities=30% Similarity=0.243 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
+.+++|..+-..|+.||+.-+.-...|+.++..|+.|.+.+|+++..
T Consensus 329 akVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ 375 (832)
T KOG2077|consen 329 AKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAED 375 (832)
T ss_pred HHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777777777766667777777777777777776654
No 414
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=23.16 E-value=3.8e+02 Score=26.55 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 145 ESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHL 196 (488)
Q Consensus 145 ESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~L 196 (488)
.+..|+|-.|.+ .+-+.++..|..++..|+.++....++++.|.-.-+.|
T Consensus 114 L~eEr~Ry~rLQ--qssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIERQL 163 (179)
T PF13942_consen 114 LSEERARYQRLQ--QSSDSELDALRQQQQRLQYQLDTTTRKLENLTDIERQL 163 (179)
T ss_pred HHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 344455544444 66778889999999999999988888888777655544
No 415
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=23.15 E-value=3.4e+02 Score=31.03 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 154 RQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 154 KQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
++.-+..+..+...+......+.++++.+.+++..+..+|..|..+|..+
T Consensus 196 eq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~ 245 (596)
T KOG4360|consen 196 EQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDL 245 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444444444444444444444455555555544443
No 416
>PRK11239 hypothetical protein; Provisional
Probab=23.12 E-value=1.3e+02 Score=30.34 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 159 EELTRKAADLSQENESLKREKELAVK 184 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~q 184 (488)
+.|+.+|..|+.|...|+.++..|..
T Consensus 186 ~~Le~rv~~Le~eva~L~~~l~~l~~ 211 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQRLDSLLA 211 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777777777777777766666544
No 417
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=23.01 E-value=8.6e+02 Score=25.97 Aligned_cols=63 Identities=11% Similarity=0.168 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 144 RESARQTIRRRQALCEELTRKAADLSQENE---------------------SLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 144 RESArRSR~RKQeyveELE~kV~~Le~EN~---------------------~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
=+..|.-|..=+..++.|..+...|+.... .|..-+...+.++..|..|...|++.+..
T Consensus 18 Le~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E 97 (319)
T PF09789_consen 18 LEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNE 97 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555545555555555555555443 34455566777788888888888888887
Q ss_pred Hhcc
Q 011345 203 VMKS 206 (488)
Q Consensus 203 L~a~ 206 (488)
++|-
T Consensus 98 ~qGD 101 (319)
T PF09789_consen 98 AQGD 101 (319)
T ss_pred Hhch
Confidence 7653
No 418
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.91 E-value=4.8e+02 Score=31.46 Aligned_cols=12 Identities=17% Similarity=0.136 Sum_probs=5.0
Q ss_pred cccccccccccC
Q 011345 391 QIGHYTREATLT 402 (488)
Q Consensus 391 ~~~~~~~e~~~~ 402 (488)
|+-.|-+|.-++
T Consensus 859 FPksYVk~~~~~ 870 (1118)
T KOG1029|consen 859 FPKSYVKEVGAI 870 (1118)
T ss_pred CcHHhhhhcccc
Confidence 344444444333
No 419
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=22.83 E-value=8.5e+02 Score=25.55 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=13.2
Q ss_pred ccCCCCCCC-CCCcceeeccCccccCCCC
Q 011345 284 QENPTDSNV-ARTPLYVVPCPWFFPLHDS 311 (488)
Q Consensus 284 q~n~~~~~~-~~tp~y~~pCpw~fp~p~~ 311 (488)
-.||-.++. -+.||+ +=..|.|+-
T Consensus 160 lLnpe~dsv~lq~p~~----seswpvpea 184 (277)
T PF15030_consen 160 LLNPEMDSVMLQRPLS----SESWPVPEA 184 (277)
T ss_pred ecCccccchhccCCCC----CCCCCCCCC
Confidence 456666665 466666 444455543
No 420
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=22.73 E-value=8.5e+02 Score=28.52 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEY 186 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~ 186 (488)
+.+|+.+.+.++...+.|..+++.+.++.
T Consensus 581 L~~l~e~~~~l~~~ae~LaeR~e~a~d~Q 609 (717)
T PF10168_consen 581 LQELQEERKSLRESAEKLAERYEEAKDKQ 609 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433333
No 421
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=22.68 E-value=5.9e+02 Score=24.09 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 155 QALCEELTRKAADLSQENESLKREK 179 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkkel 179 (488)
...++.++.++..++.....++.++
T Consensus 162 ~~k~~~~~~ei~~~~~~~~~~~~~~ 186 (236)
T PF09325_consen 162 QDKVEQAENEIEEAERRVEQAKDEF 186 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 422
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.56 E-value=3.8e+02 Score=30.01 Aligned_cols=48 Identities=13% Similarity=0.156 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
.|.+.||.+.......-++|+.=+.-..+++..|...|..-.+.|..|
T Consensus 134 ~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El 181 (542)
T KOG0993|consen 134 QYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDEL 181 (542)
T ss_pred chhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHH
Confidence 345555555555544444454444444444555544444444444444
No 423
>PRK11546 zraP zinc resistance protein; Provisional
Probab=22.42 E-value=3.2e+02 Score=25.94 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=10.7
Q ss_pred CchhhHHHHHHHHHHHhhHHHHHHHHH
Q 011345 127 LTEAEKEERRVCRILANRESARQTIRR 153 (488)
Q Consensus 127 lt~eEkEeKR~RRkiKNRESArRSR~R 153 (488)
+|. |.......|.+.=-++-...|
T Consensus 44 LT~---EQQa~~q~I~~~f~~~t~~LR 67 (143)
T PRK11546 44 LTT---EQQAAWQKIHNDFYAQTSALR 67 (143)
T ss_pred CCH---HHHHHHHHHHHHHHHHHHHHH
Confidence 555 444444445544444333333
No 424
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=22.35 E-value=2.2e+02 Score=31.82 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 179 KELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 179 l~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
+.-|+.++....+||++|+.++..|
T Consensus 274 id~LE~rv~~~taeNqeL~kkV~~L 298 (472)
T KOG0709|consen 274 IDGLESRVSAFTAENQELQKKVEEL 298 (472)
T ss_pred HHHHhhhhhhcccCcHHHHHHHHHH
Confidence 6677778888888888888888876
No 425
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=22.25 E-value=2.7e+02 Score=28.43 Aligned_cols=57 Identities=14% Similarity=0.034 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 146 SARQTIRRRQALC----EELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 146 SArRSR~RKQeyv----eELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
|+--=-+||.-.. ..++.++..|+.++..|..++..++.+++.-+.-|.++++-..+
T Consensus 171 SsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEk 231 (259)
T KOG4001|consen 171 SSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEK 231 (259)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3333345554433 34677888888888888888888888887776666666554444
No 426
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=22.12 E-value=3.2e+02 Score=26.93 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 173 ESLKREKELAVKEYQSLETINKHLKAQVA 201 (488)
Q Consensus 173 ~~Lkkel~~L~qe~~~LesEN~~LRaqL~ 201 (488)
..|++.-...++++..|+..|..+-..-.
T Consensus 144 ~el~~~d~fykeql~~le~k~~e~yk~t~ 172 (187)
T PF05300_consen 144 AELKKQDAFYKEQLARLEEKNAEFYKVTS 172 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445455555566666666666544433
No 427
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=22.11 E-value=8.9e+02 Score=29.46 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=19.5
Q ss_pred ccccCCCCCCCCCCCchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 011345 113 TRYISMAGGRSRQNLTEAEKEERRVCRILANRESARQTIRRRQALCEELTR 163 (488)
Q Consensus 113 ~~s~s~~~gRkR~~lt~eEkEeKR~RRkiKNRESArRSR~RKQeyveELE~ 163 (488)
+..|+..--|.|-..+-.+ .--.+-+..-|.+|++|--++-.+++.
T Consensus 440 ~~~DPdf~yr~~l~id~~~-----liD~~vdkak~eeseqkA~e~~kk~~k 485 (1102)
T KOG1924|consen 440 TGMDPDFKYRFRLDIDLTE-----LIDKMVDKAKAEESEQKAAELEKKFDK 485 (1102)
T ss_pred CCCCCCcchhhcccCcHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554445554332222 222233445555666544443333333
No 428
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=21.98 E-value=2.7e+02 Score=30.20 Aligned_cols=12 Identities=17% Similarity=0.160 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q 011345 157 LCEELTRKAADL 168 (488)
Q Consensus 157 yveELE~kV~~L 168 (488)
..++|..+|+.|
T Consensus 47 EN~~Lk~eVerL 58 (420)
T PF07407_consen 47 ENNDLKIEVERL 58 (420)
T ss_pred HHHHHHHHHHHH
Confidence 344555555555
No 429
>PRK06835 DNA replication protein DnaC; Validated
Probab=21.97 E-value=4.2e+02 Score=27.76 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 157 LCEELTRKAADLSQENESLKRE-KELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkke-l~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
.+.+|+.++..+--+.....-. ...-...+..|..++..|+.+..+|.
T Consensus 37 ~~~~id~~i~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~lL 85 (329)
T PRK06835 37 EIAEIDDEIAKLGIKLSRAILKNPDKKEETLKELKEKITDLRVKKAELL 85 (329)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555665555554433332110 00014455677777777877777764
No 430
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=21.94 E-value=1.5e+02 Score=31.68 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=15.6
Q ss_pred cccCCcchhhHHHHH---HHHHHHHhhh
Q 011345 450 VNYPSRKLVDAATAA---EARKRRKELT 474 (488)
Q Consensus 450 ~~~~~k~lvda~aaa---earkrrkelt 474 (488)
|..=.|| ||++.-| ||.|-|.|..
T Consensus 320 IeMLaKK-VdtLtKAmEVEaKKmrREvA 346 (351)
T PF07058_consen 320 IEMLAKK-VDTLTKAMEVEAKKMRREVA 346 (351)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3333444 5888766 7888887764
No 431
>COG4345 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.84 E-value=3.3e+02 Score=26.96 Aligned_cols=33 Identities=36% Similarity=0.422 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 159 EELTRKAADLSQENESLKREKELAVKEYQSLET 191 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~qe~~~Les 191 (488)
.+|+.++.....|++++.+.+..+.+++..+.+
T Consensus 121 ~el~eK~~~~~~Everi~~~ieE~v~eLe~~a~ 153 (181)
T COG4345 121 KELEEKLADAMEEVERIEKTIEELVSELESLAN 153 (181)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666655555544
No 432
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=21.81 E-value=3.6e+02 Score=33.88 Aligned_cols=81 Identities=17% Similarity=0.233 Sum_probs=52.3
Q ss_pred CchhhHHHHHHHHHHHhhHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 127 LTEAEKEERRVCRILANRESARQTIRR--------------RQALCEELTRKAADLSQENESLKREKELAVKEYQSLETI 192 (488)
Q Consensus 127 lt~eEkEeKR~RRkiKNRESArRSR~R--------------KQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesE 192 (488)
..++|+..+.+|-++.++--+...-.. -.+.|..+|..+.....++..-.++++.|+++...|..-
T Consensus 1203 f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~ 1282 (1758)
T KOG0994|consen 1203 FLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTT 1282 (1758)
T ss_pred HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHH
Confidence 455666666666666555333333333 334444455555555555555557888999999999999
Q ss_pred HHHHHHHHHHHhccc
Q 011345 193 NKHLKAQVAKVMKSE 207 (488)
Q Consensus 193 N~~LRaqL~kL~a~~ 207 (488)
-++|++++.+|....
T Consensus 1283 ~keL~e~~~~ik~sd 1297 (1758)
T KOG0994|consen 1283 YKELREQLEKIKESD 1297 (1758)
T ss_pred HHHHHHHHHHhhccC
Confidence 999999999986433
No 433
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=21.76 E-value=3.5e+02 Score=24.17 Aligned_cols=60 Identities=23% Similarity=0.102 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 133 EERRVCRILANRESARQTIRRR--------QALCEELTRKAADLSQENESLKREKELAVKEYQSLETI 192 (488)
Q Consensus 133 EeKR~RRkiKNRESArRSR~RK--------QeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesE 192 (488)
...+.+|++-.+..+-..---- ...+..|...++.++++|+.|..+...|..+...|..+
T Consensus 19 ~~~~~~~~l~~~l~~~l~~f~~~~~~g~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 19 RRVRRRRILTLVLLALLALFQYLAWFGKNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4455556666666655443222 12233444455555555555555555554444444444
No 434
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=21.73 E-value=6.8e+02 Score=26.91 Aligned_cols=17 Identities=29% Similarity=0.390 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011345 148 RQTIRRRQALCEELTRK 164 (488)
Q Consensus 148 rRSR~RKQeyveELE~k 164 (488)
||.-.|++...++|+..
T Consensus 354 qraeekeq~eaee~~ra 370 (445)
T KOG2891|consen 354 QRAEEKEQKEAEELERA 370 (445)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 33333444455555443
No 435
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=21.66 E-value=6.3e+02 Score=23.17 Aligned_cols=54 Identities=20% Similarity=0.219 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 151 IRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 151 R~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
|.-.+..+-.|+..++.++..+..|.++...|...+..|..+|..+-+++..|+
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLq 64 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQ 64 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444444444443
No 436
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=21.51 E-value=2.1e+02 Score=25.22 Aligned_cols=33 Identities=15% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 169 SQENESLKREKELAVKEYQSLETINKHLKAQVA 201 (488)
Q Consensus 169 e~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~ 201 (488)
......+..++..|.+++..|+.||..|+.-+.
T Consensus 70 ~~~~~~~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 70 ASELAAAMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 437
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=21.47 E-value=5.5e+02 Score=29.54 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011345 186 YQSLETINKHLKAQVAKV 203 (488)
Q Consensus 186 ~~~LesEN~~LRaqL~kL 203 (488)
+..+..|+..|...|.++
T Consensus 334 ve~mn~Er~~l~r~l~~i 351 (581)
T KOG0995|consen 334 VERMNLERNKLKRELNKI 351 (581)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555555554
No 438
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=21.41 E-value=5e+02 Score=28.02 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 166 ADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 166 ~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
+.|..+...|+.++..|.+++..++.+-..+...|..+
T Consensus 72 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~ 109 (418)
T TIGR00414 72 EEIKKELKELKEELTELSAALKALEAELQDKLLSIPNI 109 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 33444444455555555555555555544444444444
No 439
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=21.39 E-value=4e+02 Score=31.49 Aligned_cols=38 Identities=29% Similarity=0.312 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 150 TIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQ 187 (488)
Q Consensus 150 SR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~ 187 (488)
++.+--+.+..|..+++.++.||..|+-++..|.++++
T Consensus 128 ~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kele 165 (769)
T PF05911_consen 128 EKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELE 165 (769)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555678889999999999999988887775543
No 440
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=21.32 E-value=2.1e+02 Score=23.99 Aligned_cols=22 Identities=41% Similarity=0.372 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREK 179 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel 179 (488)
+.||+.++.-|+.|.++|+.++
T Consensus 27 V~El~eRIalLq~EIeRlkAe~ 48 (65)
T COG5509 27 VAELEERIALLQAEIERLKAEL 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777666554
No 441
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=21.31 E-value=7.9e+02 Score=28.13 Aligned_cols=43 Identities=28% Similarity=0.359 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 160 ELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 160 ELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
.++.+.+...-..++|+.+++...++++.|.+.-..|+.|+.+
T Consensus 320 ~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~k 362 (622)
T COG5185 320 AMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRK 362 (622)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3333333333333444444555555555555555555555544
No 442
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=21.28 E-value=8.2e+02 Score=29.35 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 165 AADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 165 V~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
.+.|.+|-..+++++..+...-+.|...+..|++++..|..
T Consensus 218 kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 218 KNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44556666666777777777777777778888888777753
No 443
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=21.25 E-value=2.9e+02 Score=26.87 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Q 011345 164 KAADLSQENESLKREKELAVKEYQSLETI-----NKHLKAQVAK 202 (488)
Q Consensus 164 kV~~Le~EN~~Lkkel~~L~qe~~~LesE-----N~~LRaqL~k 202 (488)
++..++.|...|++-+....+++..|... -..|++.|.+
T Consensus 37 EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqnlsk 80 (162)
T PF04201_consen 37 ELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQNLSK 80 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHHHHH
Confidence 33333444444444444444444444333 3445555554
No 444
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=21.21 E-value=1.7e+02 Score=26.73 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELA 182 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L 182 (488)
-++++.+++.|+.+...|..+++.+
T Consensus 107 e~~~~~~l~~L~~~i~~L~~~~~~~ 131 (134)
T PF07047_consen 107 EEELQERLEELEERIEELEEQVEKQ 131 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666665555543
No 445
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=21.18 E-value=3.5e+02 Score=21.77 Aligned_cols=45 Identities=20% Similarity=0.166 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLK-REKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lk-kel~~L~qe~~~LesEN~~LRaqL 200 (488)
.++++.+.-+..++-|...+- ..-..+..++.....+-..|+.++
T Consensus 32 ~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 32 RDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555544432 222344445555555555555554
No 446
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=21.08 E-value=4e+02 Score=27.70 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
+++.+.++...+.+...+..++..|+.+++....+...|..++....
T Consensus 230 l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~ 276 (344)
T PF12777_consen 230 LEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETE 276 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 447
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=21.06 E-value=3e+02 Score=25.71 Aligned_cols=54 Identities=24% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 011345 155 QALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMKSEV 208 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a~~~ 208 (488)
......+..++.....+...++.++..+..+...+..+|..|+.+..-+..+..
T Consensus 90 ~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~l 143 (177)
T PF13870_consen 90 SEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPAL 143 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH
No 448
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=20.91 E-value=2.5e+02 Score=25.60 Aligned_cols=14 Identities=29% Similarity=0.340 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 011345 190 ETINKHLKAQVAKV 203 (488)
Q Consensus 190 esEN~~LRaqL~kL 203 (488)
+.||.-||-++.-|
T Consensus 85 eEENNlLklKievL 98 (108)
T cd07429 85 EEENNLLKLKIEVL 98 (108)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 449
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=20.87 E-value=2.1e+02 Score=32.90 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 011345 164 KAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMKSEVG 209 (488)
Q Consensus 164 kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a~~~~ 209 (488)
.+..|+.+...|+++.+.|.++-.++...-.+++++|..|+..+-.
T Consensus 512 ~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L~~~Vf~ 557 (604)
T KOG3863|consen 512 CILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSELYQEVFQ 557 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999865444
No 450
>PF14645 Chibby: Chibby family
Probab=20.85 E-value=2.3e+02 Score=25.73 Aligned_cols=28 Identities=18% Similarity=0.181 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 173 ESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 173 ~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
..|++++..|++++.-|..++..|..-|
T Consensus 74 ~~l~~~n~~L~EENN~Lklk~elLlDML 101 (116)
T PF14645_consen 74 QRLRKENQQLEEENNLLKLKIELLLDML 101 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444433
No 451
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=20.84 E-value=8.9e+02 Score=24.58 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKE 180 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~ 180 (488)
...|+.+...++.....|..++.
T Consensus 231 ~~~le~~~~~~ee~~~~L~ekme 253 (297)
T PF02841_consen 231 EQMLEQQERSYEEHIKQLKEKME 253 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333
No 452
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=20.74 E-value=33 Score=34.89 Aligned_cols=44 Identities=25% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 160 ELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 160 ELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
+....++.....+..|++-++.|..+++.|..||+.|+++-.+|
T Consensus 119 DdKT~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 119 DDKTRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp --------------------------------------------
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555555555555555555555554
No 453
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=20.72 E-value=7.8e+02 Score=27.74 Aligned_cols=49 Identities=22% Similarity=0.223 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 153 RRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 153 RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
|++..+..+-.+++.|+.||.. -+++.|..+...|...-..|+....+|
T Consensus 282 rrhrEil~k~eReasle~Enlq--mr~qqleeentelRs~~arlksl~dkl 330 (502)
T KOG0982|consen 282 RRHREILIKKEREASLEKENLQ--MRDQQLEEENTELRSLIARLKSLADKL 330 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444422 233333333333333333334444333
No 454
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=20.68 E-value=9.8e+02 Score=28.03 Aligned_cols=43 Identities=21% Similarity=0.424 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 163 RKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 163 ~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
.++..|+.+...|+..-+.|.++++.+...-..|..++.++..
T Consensus 579 ~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~ 621 (717)
T PF10168_consen 579 KELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQ 621 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666677777777666667666666544
No 455
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=20.61 E-value=3.6e+02 Score=31.90 Aligned_cols=65 Identities=12% Similarity=0.260 Sum_probs=38.3
Q ss_pred HHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 139 RILANRESARQ-TIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 139 RkiKNRESArR-SR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
..+|+|.-..+ -=.||...+..|..++.++..++..++..|..|+..+...+.++..|...+..|
T Consensus 283 ~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~L 348 (775)
T PF10174_consen 283 LAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEAL 348 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34455533322 223455567777777777777777766666666666666666665555555544
No 456
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=20.58 E-value=4.2e+02 Score=29.81 Aligned_cols=25 Identities=8% Similarity=0.113 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 155 QALCEELTRKAADLSQENESLKREK 179 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkkel 179 (488)
++.++.||.+++.|+.+...|..++
T Consensus 562 ~~~~~~~e~~i~~le~~~~~l~~~l 586 (638)
T PRK10636 562 RKEIARLEKEMEKLNAQLAQAEEKL 586 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3355667777777777766655554
No 457
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=20.57 E-value=2.4e+02 Score=31.62 Aligned_cols=44 Identities=18% Similarity=0.184 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVA 201 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~ 201 (488)
+.+|..++..|...|.+|...+...++++..|..+-..|.+.-.
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~p~~ 46 (512)
T TIGR03689 3 LRELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQPPS 46 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 35677788888888888888888888888888888777765443
No 458
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=20.46 E-value=7.1e+02 Score=28.61 Aligned_cols=13 Identities=23% Similarity=0.238 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 011345 191 TINKHLKAQVAKV 203 (488)
Q Consensus 191 sEN~~LRaqL~kL 203 (488)
+=...|.+|+.+.
T Consensus 573 sVIlsLEQQVRER 585 (632)
T KOG3910|consen 573 SVILSLEQQVRER 585 (632)
T ss_pred HHHHHHHHHHHHc
Confidence 3344566666553
No 459
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=20.22 E-value=7.7e+02 Score=23.59 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 160 ELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 160 ELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
.++.++..|+.+...+...+..|...+..++..-..|+.+...|.+
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~a 140 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKA 140 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666777777777777776667666666544
No 460
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=20.16 E-value=3.1e+02 Score=30.66 Aligned_cols=46 Identities=20% Similarity=0.154 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELA---V---KEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L---~---qe~~~LesEN~~LRaqL~kL 203 (488)
++.||.+++.|+.+...|..++..- . .++..+..+-..++.++..+
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVA 621 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887776665321 0 13445555555555555554
No 461
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=20.15 E-value=2.9e+02 Score=24.17 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 161 LTRKAADLSQENESLKREKELAVKEYQ 187 (488)
Q Consensus 161 LE~kV~~Le~EN~~Lkkel~~L~qe~~ 187 (488)
++..+..|+..-..|.+++..+++++.
T Consensus 79 ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 79 LELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445444444444433
Done!