Query 011345
Match_columns 488
No_of_seqs 182 out of 727
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 06:12:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011345.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011345hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.4 1.6E-13 5.5E-18 106.1 6.3 52 135-186 1-52 (55)
2 2wt7_A Proto-oncogene protein 99.2 2.6E-11 8.9E-16 95.5 9.0 57 134-190 1-57 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.2 8.2E-11 2.8E-15 91.8 9.0 59 135-200 1-59 (61)
4 1jnm_A Proto-oncogene C-JUN; B 99.1 2.5E-10 8.7E-15 89.4 7.5 59 135-200 1-59 (62)
5 2dgc_A Protein (GCN4); basic d 99.0 3.3E-10 1.1E-14 89.8 6.7 52 135-186 9-60 (63)
6 1ci6_A Transcription factor AT 98.8 1.2E-08 4.3E-13 80.5 8.1 60 135-201 2-61 (63)
7 1gd2_E Transcription factor PA 98.7 6.8E-08 2.3E-12 78.3 8.2 61 137-197 10-70 (70)
8 1hjb_A Ccaat/enhancer binding 98.5 2.8E-07 9.7E-12 77.5 8.7 64 133-203 13-76 (87)
9 1gu4_A CAAT/enhancer binding p 98.5 5.6E-07 1.9E-11 74.3 8.5 54 134-187 14-67 (78)
10 3a5t_A Transcription factor MA 98.3 2.3E-08 7.7E-13 87.0 -3.1 57 127-183 28-85 (107)
11 2wt7_B Transcription factor MA 98.2 1.3E-05 4.3E-10 68.0 10.5 71 127-204 18-89 (90)
12 2oqq_A Transcription factor HY 97.0 0.0016 5.5E-08 48.4 6.1 40 155-201 2-41 (42)
13 1skn_P DNA-binding domain of S 95.5 0.0079 2.7E-07 51.2 3.2 63 83-163 27-90 (92)
14 1deb_A APC protein, adenomatou 94.4 0.19 6.6E-06 38.9 7.8 48 158-205 5-52 (54)
15 2w6a_A ARF GTPase-activating p 93.2 0.19 6.6E-06 40.0 6.2 40 159-198 23-62 (63)
16 3s9g_A Protein hexim1; cyclin 92.8 0.34 1.2E-05 42.0 7.6 45 158-202 39-90 (104)
17 3he5_A Synzip1; heterodimeric 91.4 0.73 2.5E-05 34.5 7.0 44 157-200 4-47 (49)
18 3a7p_A Autophagy protein 16; c 90.3 3.4 0.00012 38.0 11.8 76 134-209 67-142 (152)
19 3hnw_A Uncharacterized protein 89.9 1.3 4.6E-05 39.5 8.8 51 153-203 72-122 (138)
20 2jee_A YIIU; FTSZ, septum, coi 89.2 1.7 5.7E-05 36.3 8.2 44 159-202 23-66 (81)
21 2oxj_A Hybrid alpha/beta pepti 88.8 0.5 1.7E-05 33.7 4.1 28 157-184 2-29 (34)
22 3m48_A General control protein 88.8 0.43 1.5E-05 33.9 3.7 27 158-184 2-28 (33)
23 2c9l_Y EB1, zebra, BZLF1 trans 88.6 2 6.9E-05 33.8 7.7 35 139-173 5-39 (63)
24 1kd8_B GABH BLL, GCN4 acid bas 88.3 0.76 2.6E-05 33.2 4.8 29 157-185 2-30 (36)
25 1kd8_A GABH AIV, GCN4 acid bas 87.6 0.73 2.5E-05 33.3 4.3 30 157-186 2-31 (36)
26 3hnw_A Uncharacterized protein 87.3 3.6 0.00012 36.7 9.7 53 152-204 78-130 (138)
27 3oja_B Anopheles plasmodium-re 86.7 6 0.00021 40.6 12.4 55 154-208 528-582 (597)
28 1go4_E MAD1 (mitotic arrest de 86.4 1.8 6.2E-05 37.3 7.0 27 157-183 13-39 (100)
29 2dfs_A Myosin-5A; myosin-V, in 85.7 4.4 0.00015 46.5 11.7 56 149-204 984-1043(1080)
30 2kz5_A Transcription factor NF 85.5 0.076 2.6E-06 45.2 -2.0 55 84-156 32-87 (91)
31 3c3f_A Alpha/beta peptide with 85.4 1 3.5E-05 32.1 4.1 28 157-184 2-29 (34)
32 2jee_A YIIU; FTSZ, septum, coi 85.4 4.1 0.00014 34.0 8.4 48 156-203 27-74 (81)
33 2yy0_A C-MYC-binding protein; 84.3 1.4 4.8E-05 33.8 4.7 33 163-202 19-51 (53)
34 3efg_A Protein SLYX homolog; x 84.1 2.5 8.5E-05 34.6 6.5 49 156-204 14-62 (78)
35 3m91_A Proteasome-associated A 84.0 4.1 0.00014 31.2 7.2 37 160-203 13-49 (51)
36 3vmx_A Voltage-gated hydrogen 83.6 4.2 0.00015 31.0 7.0 41 162-202 3-43 (48)
37 3cve_A Homer protein homolog 1 82.9 3.7 0.00013 33.5 7.0 48 156-203 21-68 (72)
38 3c3g_A Alpha/beta peptide with 82.4 2.2 7.5E-05 30.3 4.7 27 158-184 2-28 (33)
39 2bni_A General control protein 82.1 1.6 5.3E-05 31.3 3.9 28 157-184 2-29 (34)
40 3oja_B Anopheles plasmodium-re 82.0 6.7 0.00023 40.3 10.3 54 149-202 530-583 (597)
41 3cvf_A Homer-3, homer protein 81.8 2.6 8.9E-05 34.9 5.8 48 157-204 28-75 (79)
42 1uo4_A General control protein 81.7 1.7 5.7E-05 31.1 3.9 28 157-184 2-29 (34)
43 1nkp_B MAX protein, MYC proto- 81.5 1.7 5.9E-05 35.0 4.6 22 183-204 60-81 (83)
44 1t2k_D Cyclic-AMP-dependent tr 81.5 4.2 0.00014 31.2 6.5 25 179-203 24-48 (61)
45 3a2a_A Voltage-gated hydrogen 81.3 3.7 0.00013 32.3 6.1 41 162-202 10-50 (58)
46 2wq1_A General control protein 81.1 2.6 8.8E-05 30.0 4.7 27 158-184 2-28 (33)
47 1nlw_A MAD protein, MAX dimeri 80.8 2.8 9.5E-05 34.2 5.6 34 154-187 45-78 (80)
48 2hy6_A General control protein 80.4 2 6.7E-05 30.7 3.9 28 157-184 2-29 (34)
49 3mq7_A Bone marrow stromal ant 79.5 7 0.00024 34.7 8.0 39 164-202 72-110 (121)
50 1t6f_A Geminin; coiled-coil, c 77.7 3.4 0.00012 30.0 4.5 31 168-198 5-35 (37)
51 3m9b_A Proteasome-associated A 77.5 2.6 8.7E-05 41.5 5.1 41 157-204 55-95 (251)
52 2yy0_A C-MYC-binding protein; 77.3 4 0.00014 31.2 5.2 27 158-184 21-47 (53)
53 1hjb_A Ccaat/enhancer binding 75.7 19 0.00065 30.1 9.3 60 129-188 13-75 (87)
54 1fmh_A General control protein 75.3 4.6 0.00016 28.1 4.5 29 158-186 3-31 (33)
55 1a93_B MAX protein, coiled coi 74.9 4.7 0.00016 28.9 4.5 29 175-203 5-33 (34)
56 2zxx_A Geminin; coiled-coil, c 74.7 7.7 0.00026 32.2 6.5 36 168-203 32-67 (79)
57 1nkp_A C-MYC, MYC proto-oncoge 74.4 7.7 0.00026 32.0 6.6 36 155-204 51-86 (88)
58 4h22_A Leucine-rich repeat fli 73.9 13 0.00043 32.4 7.9 46 157-202 38-83 (103)
59 1uii_A Geminin; human, DNA rep 73.9 17 0.00058 30.5 8.4 37 167-203 43-79 (83)
60 1nkp_B MAX protein, MYC proto- 72.8 12 0.00042 30.0 7.2 36 154-189 45-80 (83)
61 3s9g_A Protein hexim1; cyclin 72.8 18 0.00063 31.3 8.6 28 155-182 64-91 (104)
62 1jnm_A Proto-oncogene C-JUN; B 71.8 4.4 0.00015 31.3 4.2 27 178-204 23-49 (62)
63 1wt6_A Myotonin-protein kinase 71.8 40 0.0014 28.1 10.2 60 143-205 14-73 (81)
64 3m9b_A Proteasome-associated A 71.2 4.3 0.00015 40.0 4.9 30 175-204 59-88 (251)
65 3nmd_A CGMP dependent protein 71.1 18 0.0006 29.6 7.7 45 160-204 23-67 (72)
66 3a7o_A Autophagy protein 16; c 71.1 15 0.00052 30.2 7.3 50 156-205 25-74 (75)
67 2wt7_B Transcription factor MA 70.5 10 0.00034 32.1 6.4 32 172-203 50-81 (90)
68 3swy_A Cyclic nucleotide-gated 70.0 18 0.00062 27.2 7.0 41 160-203 2-42 (46)
69 1wlq_A Geminin; coiled-coil; 2 69.8 20 0.00067 30.1 7.9 36 167-202 35-70 (83)
70 4etp_A Kinesin-like protein KA 69.6 14 0.00049 37.7 8.6 54 154-207 8-61 (403)
71 3m91_A Proteasome-associated A 69.5 18 0.00062 27.7 7.1 31 174-204 13-43 (51)
72 1dip_A Delta-sleep-inducing pe 69.2 2.8 9.5E-05 34.7 2.7 30 171-200 16-45 (78)
73 1dh3_A Transcription factor CR 68.4 8.5 0.00029 29.4 5.1 30 177-206 22-51 (55)
74 2dfs_A Myosin-5A; myosin-V, in 68.1 31 0.0011 39.6 11.8 35 155-189 1015-1049(1080)
75 2eqb_B RAB guanine nucleotide 67.7 25 0.00084 30.2 8.3 22 181-202 73-94 (97)
76 3cvf_A Homer-3, homer protein 67.7 28 0.00096 28.8 8.4 48 158-205 8-55 (79)
77 3cve_A Homer protein homolog 1 66.9 50 0.0017 26.9 10.6 47 159-205 3-49 (72)
78 3u06_A Protein claret segregat 66.7 17 0.00057 37.5 8.5 53 156-208 10-62 (412)
79 2w83_C C-JUN-amino-terminal ki 66.6 10 0.00035 31.4 5.5 22 182-203 35-56 (77)
80 2wt7_A Proto-oncogene protein 66.5 42 0.0015 25.8 9.5 23 181-203 27-49 (63)
81 3ghg_A Fibrinogen alpha chain; 66.3 16 0.00055 39.4 8.4 53 149-201 103-155 (562)
82 2v4h_A NF-kappa-B essential mo 65.7 69 0.0023 28.1 10.8 63 142-204 31-103 (110)
83 1lwu_C Fibrinogen gamma chain; 65.3 14 0.00049 37.2 7.5 44 157-200 13-56 (323)
84 2r2v_A GCN4 leucine zipper; co 65.1 11 0.00038 27.0 4.7 28 157-184 2-29 (34)
85 4emc_A Monopolin complex subun 64.6 12 0.0004 35.6 6.3 39 162-200 19-57 (190)
86 3a7p_A Autophagy protein 16; c 64.5 26 0.0009 32.2 8.4 27 177-203 96-122 (152)
87 2wuj_A Septum site-determining 63.8 6.6 0.00023 30.1 3.7 29 156-184 27-55 (57)
88 1gmj_A ATPase inhibitor; coile 63.7 53 0.0018 27.5 9.4 8 144-151 25-32 (84)
89 2wvr_A Geminin; DNA replicatio 63.6 26 0.00088 33.7 8.4 35 169-203 114-148 (209)
90 3swf_A CGMP-gated cation chann 63.1 18 0.0006 29.8 6.3 43 159-204 3-45 (74)
91 3oja_A Leucine-rich immune mol 62.8 64 0.0022 32.5 11.8 38 150-187 429-466 (487)
92 3oja_A Leucine-rich immune mol 62.7 61 0.0021 32.6 11.6 44 159-202 424-467 (487)
93 1gu4_A CAAT/enhancer binding p 62.0 30 0.001 28.3 7.5 57 129-185 13-72 (78)
94 1joc_A EEA1, early endosomal a 61.5 41 0.0014 29.1 8.8 48 156-203 11-58 (125)
95 1am9_A Srebp-1A, protein (ster 60.7 12 0.00042 30.2 5.0 59 145-203 12-76 (82)
96 1p9i_A Cortexillin I/GCN4 hybr 60.7 11 0.00038 26.0 3.9 18 187-204 9-26 (31)
97 2j5u_A MREC protein; bacterial 60.0 4.2 0.00015 39.1 2.5 34 168-201 24-60 (255)
98 1ic2_A Tropomyosin alpha chain 59.8 50 0.0017 26.5 8.4 49 144-192 15-63 (81)
99 1am9_A Srebp-1A, protein (ster 59.4 34 0.0012 27.6 7.4 29 153-181 47-75 (82)
100 2oa5_A Hypothetical protein BQ 59.3 4.9 0.00017 35.3 2.5 24 157-180 9-32 (110)
101 3q8t_A Beclin-1; autophagy, AT 59.1 79 0.0027 26.4 12.6 72 133-204 23-94 (96)
102 1jcd_A Major outer membrane li 58.6 51 0.0017 25.3 7.7 45 156-200 4-48 (52)
103 3o0z_A RHO-associated protein 58.1 1.2E+02 0.0041 28.2 11.7 52 148-201 28-79 (168)
104 1nkp_A C-MYC, MYC proto-oncoge 57.4 47 0.0016 27.3 8.0 50 155-204 22-79 (88)
105 3mq9_A Bone marrow stromal ant 57.3 78 0.0027 31.7 11.3 31 175-205 434-464 (471)
106 3htk_A Structural maintenance 57.0 58 0.002 24.3 8.6 48 153-200 9-56 (60)
107 3ra3_B P2F; coiled coil domain 56.8 8.5 0.00029 26.0 2.8 24 166-189 3-26 (28)
108 1wt6_A Myotonin-protein kinase 56.0 49 0.0017 27.6 7.8 35 155-189 37-71 (81)
109 2dgc_A Protein (GCN4); basic d 55.7 17 0.00056 28.5 4.8 30 176-205 29-58 (63)
110 2xdj_A Uncharacterized protein 55.7 86 0.0029 25.8 9.9 47 158-204 22-68 (83)
111 2w83_C C-JUN-amino-terminal ki 55.2 55 0.0019 27.1 7.9 44 159-202 33-76 (77)
112 1gd2_E Transcription factor PA 55.1 67 0.0023 25.8 8.3 30 158-187 38-67 (70)
113 3u59_A Tropomyosin beta chain; 55.0 60 0.0021 27.0 8.4 10 163-172 30-39 (101)
114 1ci6_A Transcription factor AT 53.7 18 0.00063 28.1 4.7 26 158-183 32-57 (63)
115 2xdj_A Uncharacterized protein 53.7 47 0.0016 27.4 7.4 38 154-191 25-62 (83)
116 2v71_A Nuclear distribution pr 53.6 1.5E+02 0.0051 28.0 11.8 37 158-194 90-126 (189)
117 1ic2_A Tropomyosin alpha chain 53.2 86 0.0029 25.1 11.7 52 152-203 16-67 (81)
118 3i00_A HIP-I, huntingtin-inter 53.1 42 0.0014 29.4 7.4 46 151-203 35-80 (120)
119 1g6u_A Domain swapped dimer; d 52.9 40 0.0014 25.2 6.1 37 167-203 4-46 (48)
120 3o0z_A RHO-associated protein 52.7 1.5E+02 0.005 27.6 11.8 45 135-179 69-113 (168)
121 2ve7_A Kinetochore protein HEC 52.4 18 0.00063 35.8 5.7 39 162-200 184-222 (315)
122 3u1c_A Tropomyosin alpha-1 cha 51.6 1.1E+02 0.0036 25.7 12.2 31 160-190 27-57 (101)
123 1gk7_A Vimentin; intermediate 51.1 25 0.00087 25.4 4.7 24 178-201 14-37 (39)
124 1dip_A Delta-sleep-inducing pe 50.7 16 0.00053 30.3 4.0 19 157-175 23-41 (78)
125 1ik9_A DNA repair protein XRCC 50.7 39 0.0013 32.0 7.4 22 159-180 142-163 (213)
126 2v71_A Nuclear distribution pr 50.5 1.7E+02 0.0057 27.6 12.2 38 164-201 89-126 (189)
127 4h22_A Leucine-rich repeat fli 49.5 69 0.0024 27.8 8.0 71 133-206 8-80 (103)
128 2lz1_A Nuclear factor erythroi 49.1 0.71 2.4E-05 39.3 -4.3 30 126-155 56-86 (90)
129 3bas_A Myosin heavy chain, str 49.0 1.1E+02 0.0037 25.0 12.2 51 155-205 34-84 (89)
130 4emc_A Monopolin complex subun 48.3 46 0.0016 31.6 7.3 36 157-192 21-56 (190)
131 4etp_A Kinesin-like protein KA 48.1 35 0.0012 34.9 7.1 39 158-196 5-43 (403)
132 2efr_A General control protein 47.4 1.3E+02 0.0046 27.4 10.1 58 146-203 95-152 (155)
133 3w03_C DNA repair protein XRCC 47.2 26 0.0009 32.9 5.5 30 156-185 145-174 (184)
134 3he4_A Synzip6; heterodimeric 47.0 44 0.0015 25.6 5.7 33 159-191 20-52 (56)
135 3efg_A Protein SLYX homolog; x 46.6 66 0.0023 26.1 7.2 48 159-206 10-57 (78)
136 1nlw_A MAD protein, MAX dimeri 46.0 44 0.0015 27.1 6.0 30 174-203 51-80 (80)
137 1fzc_C Fibrin; blood coagulati 45.8 7.1 0.00024 39.3 1.6 43 157-199 5-47 (319)
138 2fxo_A Myosin heavy chain, car 45.8 1.5E+02 0.005 25.6 10.3 42 162-203 82-123 (129)
139 4dzn_A Coiled-coil peptide CC- 45.7 41 0.0014 23.5 4.8 23 175-197 7-29 (33)
140 2v66_B Nuclear distribution pr 45.4 1.5E+02 0.0052 25.7 11.5 43 158-200 37-79 (111)
141 2lw1_A ABC transporter ATP-bin 45.3 66 0.0023 26.1 7.0 24 157-180 23-46 (89)
142 3qh9_A Liprin-beta-2; coiled-c 45.1 96 0.0033 25.9 7.9 24 177-200 54-77 (81)
143 3w03_C DNA repair protein XRCC 45.1 42 0.0015 31.5 6.6 32 156-187 152-183 (184)
144 2xv5_A Lamin-A/C; structural p 44.8 1.2E+02 0.0042 24.4 8.4 51 159-209 8-58 (74)
145 2ve7_C Kinetochore protein NUF 44.8 16 0.00056 35.2 3.9 58 133-190 118-182 (250)
146 3jsv_C NF-kappa-B essential mo 44.6 1.5E+02 0.0051 25.3 9.3 46 141-186 8-56 (94)
147 1zme_C Proline utilization tra 44.4 19 0.00065 27.0 3.4 24 156-179 44-67 (70)
148 3trt_A Vimentin; cytoskeleton, 44.4 1.1E+02 0.0038 23.8 11.3 56 139-197 21-76 (77)
149 3m48_A General control protein 44.0 22 0.00074 25.3 3.3 25 181-205 4-28 (33)
150 1gk6_A Vimentin; intermediate 43.9 63 0.0022 24.7 6.3 47 159-205 3-49 (59)
151 3s4r_A Vimentin; alpha-helix, 43.9 1.1E+02 0.0036 25.5 8.2 19 184-202 63-81 (93)
152 2v4h_A NF-kappa-B essential mo 43.9 1.7E+02 0.0057 25.7 10.7 48 156-203 62-109 (110)
153 3plt_A Sphingolipid long chain 43.7 47 0.0016 32.4 6.8 61 137-202 95-156 (234)
154 1p9i_A Cortexillin I/GCN4 hybr 43.5 26 0.00088 24.2 3.5 27 158-184 1-27 (31)
155 4b4t_K 26S protease regulatory 43.1 38 0.0013 34.9 6.5 46 160-205 46-91 (428)
156 2fic_A Bridging integrator 1; 41.7 93 0.0032 28.6 8.4 56 147-205 149-211 (251)
157 3u59_A Tropomyosin beta chain; 41.2 1.5E+02 0.0052 24.5 12.3 45 143-187 17-61 (101)
158 2oqq_A Transcription factor HY 40.7 64 0.0022 24.0 5.5 23 156-178 17-39 (42)
159 1wle_A Seryl-tRNA synthetase; 40.7 2.4E+02 0.0083 29.8 12.2 32 173-204 119-150 (501)
160 1m1j_C Fibrinogen gamma chain; 40.5 33 0.0011 35.6 5.5 29 177-205 105-133 (409)
161 3nmd_A CGMP dependent protein 39.6 50 0.0017 27.0 5.3 30 152-181 36-65 (72)
162 3ra3_A P1C; coiled coil domain 39.6 45 0.0015 22.5 4.1 23 167-189 4-26 (28)
163 3mq9_A Bone marrow stromal ant 38.2 2.8E+02 0.0097 27.6 11.8 7 9-15 206-212 (471)
164 3ghg_A Fibrinogen alpha chain; 38.2 1E+02 0.0035 33.5 8.8 28 354-382 369-396 (562)
165 1go4_E MAD1 (mitotic arrest de 37.9 60 0.002 27.9 5.8 33 171-203 13-45 (100)
166 1hlo_A Protein (transcription 37.8 21 0.00071 28.5 2.9 43 155-197 28-77 (80)
167 3na7_A HP0958; flagellar bioge 37.3 1.7E+02 0.0058 27.6 9.6 58 149-206 46-119 (256)
168 4ath_A MITF, microphthalmia-as 37.1 86 0.0029 26.2 6.5 17 155-171 38-54 (83)
169 3i00_A HIP-I, huntingtin-inter 36.9 1.9E+02 0.0066 25.2 9.1 39 157-195 16-58 (120)
170 3c3f_A Alpha/beta peptide with 36.8 38 0.0013 24.2 3.6 25 180-204 4-28 (34)
171 3c3g_A Alpha/beta peptide with 36.6 39 0.0013 24.0 3.6 24 181-204 4-27 (33)
172 2oa5_A Hypothetical protein BQ 36.3 19 0.00064 31.6 2.5 24 179-202 10-33 (110)
173 3he5_B Synzip2; heterodimeric 35.9 1.4E+02 0.0048 22.5 6.9 36 162-204 9-44 (52)
174 3mq7_A Bone marrow stromal ant 35.7 2.4E+02 0.0081 25.1 12.4 48 157-204 58-105 (121)
175 2zqm_A Prefoldin beta subunit 35.5 1.3E+02 0.0043 24.6 7.4 30 175-204 82-111 (117)
176 2zvf_A Alanyl-tRNA synthetase; 35.3 66 0.0023 28.1 6.0 26 160-185 29-54 (171)
177 1fmh_A General control protein 35.3 43 0.0015 23.3 3.6 25 179-203 3-27 (33)
178 1ses_A Seryl-tRNA synthetase; 34.8 3.9E+02 0.013 27.3 13.1 32 173-204 67-98 (421)
179 1uix_A RHO-associated kinase; 34.6 1.4E+02 0.0047 24.3 7.1 29 162-190 3-31 (71)
180 3iv1_A Tumor susceptibility ge 34.5 1.9E+02 0.0067 23.8 9.1 49 155-203 24-72 (78)
181 4b4t_K 26S protease regulatory 34.1 69 0.0024 33.0 6.7 42 157-198 50-91 (428)
182 1deq_A Fibrinogen (alpha chain 33.9 1.4E+02 0.0046 31.2 8.7 79 122-200 53-157 (390)
183 2fgg_A Hypothetical protein RV 33.7 25 0.00087 30.4 2.8 20 4-23 57-76 (101)
184 2aze_A Transcription factor DP 33.5 1.3E+02 0.0045 27.7 7.7 16 151-166 21-36 (155)
185 2oxj_A Hybrid alpha/beta pepti 33.4 79 0.0027 22.6 4.8 24 181-204 5-28 (34)
186 2eqb_B RAB guanine nucleotide 33.4 2.3E+02 0.0078 24.2 12.1 50 156-205 12-61 (97)
187 1s1c_X RHO-associated, coiled- 33.2 1.6E+02 0.0055 23.9 7.3 31 160-190 3-33 (71)
188 1a93_B MAX protein, coiled coi 32.7 63 0.0021 23.1 4.2 10 166-175 17-26 (34)
189 3qne_A Seryl-tRNA synthetase, 32.5 2.1E+02 0.0073 30.2 10.2 31 174-204 75-105 (485)
190 1fxk_C Protein (prefoldin); ar 32.5 1.8E+02 0.0061 24.6 8.1 24 160-183 99-122 (133)
191 3u06_A Protein claret segregat 32.2 1.1E+02 0.0036 31.6 7.7 30 160-189 7-36 (412)
192 2dq0_A Seryl-tRNA synthetase; 32.2 2.7E+02 0.0093 28.8 10.8 31 174-204 73-103 (455)
193 3tnu_B Keratin, type II cytosk 32.2 67 0.0023 27.7 5.4 25 179-203 77-101 (129)
194 2q6q_A Spindle POLE BODY compo 32.1 2.1E+02 0.0071 23.4 7.7 46 159-204 6-51 (74)
195 3bbp_D GRIP and coiled-coil do 32.0 36 0.0012 27.8 3.3 17 187-203 46-62 (71)
196 3vkg_A Dynein heavy chain, cyt 31.9 2.2E+02 0.0076 36.8 11.7 43 142-184 2021-2063(3245)
197 1deq_A Fibrinogen (alpha chain 31.8 1E+02 0.0035 32.1 7.4 23 158-180 136-158 (390)
198 3htk_A Structural maintenance 31.4 1.6E+02 0.0054 21.8 8.2 46 158-203 7-52 (60)
199 3u1c_A Tropomyosin alpha-1 cha 31.3 2.3E+02 0.0078 23.6 12.5 46 144-189 18-63 (101)
200 2oto_A M protein; helical coil 31.3 2E+02 0.0067 25.4 8.4 31 159-189 53-83 (155)
201 1gmj_A ATPase inhibitor; coile 31.2 2.3E+02 0.008 23.7 9.1 24 158-181 53-76 (84)
202 1wj7_A Hypothetical protein (R 31.0 43 0.0015 29.0 3.9 46 5-54 54-103 (104)
203 2xv5_A Lamin-A/C; structural p 30.4 2.1E+02 0.0073 23.0 8.6 53 149-201 5-57 (74)
204 3tnu_A Keratin, type I cytoske 30.3 2.2E+02 0.0076 24.5 8.4 48 157-204 78-125 (131)
205 1uo4_A General control protein 30.2 52 0.0018 23.5 3.5 24 181-204 5-28 (34)
206 2bni_A General control protein 29.9 53 0.0018 23.5 3.5 26 180-205 4-29 (34)
207 2er8_A Regulatory protein Leu3 29.6 28 0.00095 26.3 2.3 21 155-175 48-68 (72)
208 2zvf_A Alanyl-tRNA synthetase; 29.4 63 0.0021 28.2 4.8 32 173-204 28-59 (171)
209 1x8y_A Lamin A/C; structural p 29.4 2.3E+02 0.0078 23.0 9.6 51 155-205 27-77 (86)
210 3a2a_A Voltage-gated hydrogen 29.0 1.5E+02 0.005 23.4 6.1 27 158-184 20-46 (58)
211 1lwu_C Fibrinogen gamma chain; 28.6 1.5E+02 0.005 29.9 7.8 36 168-203 17-52 (323)
212 3tnu_B Keratin, type II cytosk 28.6 2.8E+02 0.0095 23.7 10.1 49 157-205 76-124 (129)
213 3tnu_A Keratin, type I cytoske 28.2 2.9E+02 0.0098 23.8 10.0 24 179-202 79-102 (131)
214 2hy6_A General control protein 27.8 60 0.0021 23.2 3.5 24 181-204 5-28 (34)
215 2wuj_A Septum site-determining 27.3 57 0.0019 24.8 3.6 23 181-203 31-53 (57)
216 2zqm_A Prefoldin beta subunit 27.2 2.1E+02 0.0072 23.3 7.4 29 175-203 75-103 (117)
217 2ocy_A RAB guanine nucleotide 26.7 3.7E+02 0.013 24.5 10.0 19 184-202 108-126 (154)
218 3ljm_A Coil Ser L9C; de novo d 26.3 1.1E+02 0.0036 21.2 4.3 23 159-181 4-26 (31)
219 4ati_A MITF, microphthalmia-as 26.1 39 0.0013 29.2 2.8 18 186-203 93-110 (118)
220 4dzn_A Coiled-coil peptide CC- 25.5 1.4E+02 0.0047 20.8 4.8 11 165-175 11-21 (33)
221 1fmh_B General control protein 25.2 1.5E+02 0.0052 20.6 5.0 25 160-184 5-29 (33)
222 2fxo_A Myosin heavy chain, car 24.9 3.3E+02 0.011 23.4 12.2 46 158-203 64-109 (129)
223 1wlq_A Geminin; coiled-coil; 2 24.2 1.8E+02 0.0063 24.3 6.3 39 161-203 43-81 (83)
224 2b5u_A Colicin E3; high resolu 24.2 5.7E+02 0.02 27.7 11.6 17 22-38 123-139 (551)
225 3thf_A Protein shroom; coiled- 24.1 1.9E+02 0.0064 27.5 7.2 43 151-204 14-56 (190)
226 1zxa_A CGMP-dependent protein 23.6 1.1E+02 0.0038 24.6 4.8 16 189-204 37-52 (67)
227 3jsv_C NF-kappa-B essential mo 23.4 3.3E+02 0.011 23.2 7.9 48 156-203 40-87 (94)
228 1wle_A Seryl-tRNA synthetase; 23.2 2.3E+02 0.0078 30.0 8.4 41 164-204 117-157 (501)
229 3na7_A HP0958; flagellar bioge 22.1 4.9E+02 0.017 24.4 11.2 66 141-206 52-126 (256)
230 1fxk_C Protein (prefoldin); ar 22.0 2.6E+02 0.009 23.5 7.2 38 158-195 90-127 (133)
231 3qh9_A Liprin-beta-2; coiled-c 21.4 3.6E+02 0.012 22.5 8.1 35 157-191 27-61 (81)
232 3mov_A Lamin-B1; LMNB1, B-type 21.3 3.6E+02 0.012 22.5 9.7 50 157-206 38-87 (95)
233 1m1j_A Fibrinogen alpha subuni 21.0 5.3E+02 0.018 27.6 10.5 75 126-200 55-155 (491)
234 1m1j_C Fibrinogen gamma chain; 21.0 2.3E+02 0.0079 29.4 7.8 45 157-201 92-136 (409)
235 2wq1_A General control protein 21.0 1.1E+02 0.0037 21.8 3.6 24 181-204 4-27 (33)
236 4ati_A MITF, microphthalmia-as 20.9 73 0.0025 27.4 3.5 37 154-190 72-111 (118)
237 2gkw_A TNF receptor-associated 20.8 1.5E+02 0.0051 26.6 5.7 19 159-177 3-21 (192)
238 1jcd_A Major outer membrane li 20.7 2.9E+02 0.0098 21.1 6.9 20 165-184 6-25 (52)
239 2akf_A Coronin-1A; coiled coil 20.7 2E+02 0.0067 20.1 4.8 22 161-182 4-25 (32)
240 2j5u_A MREC protein; bacterial 20.5 55 0.0019 31.4 2.9 17 175-191 24-40 (255)
241 1l8d_A DNA double-strand break 20.4 2.8E+02 0.0097 22.5 6.9 13 188-200 89-101 (112)
242 1g6u_A Domain swapped dimer; d 20.4 1.6E+02 0.0055 21.9 4.7 24 165-188 22-45 (48)
243 1joc_A EEA1, early endosomal a 20.3 3.5E+02 0.012 23.2 7.7 43 160-202 8-50 (125)
244 3e98_A GAF domain of unknown f 20.2 2E+02 0.0068 27.5 6.7 29 159-187 82-113 (252)
245 3mud_A DNA repair protein XRCC 20.1 3.4E+02 0.012 25.4 8.0 24 152-175 138-161 (175)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.43 E-value=1.6e-13 Score=106.13 Aligned_cols=52 Identities=29% Similarity=0.485 Sum_probs=47.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 135 RRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEY 186 (488)
Q Consensus 135 KR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~ 186 (488)
||++||++||+||++||.||++|+++||.+|..|+.||..|..++..|++.+
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999999999999999999999888876543
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.24 E-value=2.6e-11 Score=95.48 Aligned_cols=57 Identities=30% Similarity=0.383 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 134 ERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLE 190 (488)
Q Consensus 134 eKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~Le 190 (488)
+||++|+.+||+||++||.||++++++|+.+|..|+.+|..|..++..|..++..|.
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999998887766555443
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.18 E-value=8.2e-11 Score=91.79 Aligned_cols=59 Identities=29% Similarity=0.331 Sum_probs=51.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 135 RRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 135 KR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
||++|+.+||++|++||.||++|+++||.+|..|+.+|..|..++..|.. |+..|+..|
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~-------e~~~Lk~~l 59 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRN-------EVAQLKQLL 59 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHh
Confidence 58899999999999999999999999999999999999999888887655 555665544
No 4
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.07 E-value=2.5e-10 Score=89.38 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=48.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 135 RRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 135 KR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
|+.+|+.+||+||++||.||++|+++||.+|..|+.+|..|..++..|.. |+..|+..|
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~-------e~~~Lk~~l 59 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLRE-------QVAQLKQKV 59 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHTTC---
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 35778889999999999999999999999999999999999888877655 555555544
No 5
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.04 E-value=3.3e-10 Score=89.76 Aligned_cols=52 Identities=23% Similarity=0.206 Sum_probs=43.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 135 RRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEY 186 (488)
Q Consensus 135 KR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~ 186 (488)
+..++..+||+||++||.||++|+++||.+|..|+.+|..|..++..|.+++
T Consensus 9 ~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 9 PAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445699999999999999999999999999999999988888876644
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.81 E-value=1.2e-08 Score=80.47 Aligned_cols=60 Identities=22% Similarity=0.318 Sum_probs=47.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 135 RRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVA 201 (488)
Q Consensus 135 KR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~ 201 (488)
|+++++.+||.+|+|+|.||++++++|+.++..|+.+|..|..++..|. .|+..|+.-|.
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~-------~E~~~Lk~ll~ 61 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLA-------KEIQYLKDLIE 61 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHh
Confidence 6788899999999999999999999999999999999999988887765 46666666553
No 7
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.66 E-value=6.8e-08 Score=78.31 Aligned_cols=61 Identities=21% Similarity=0.219 Sum_probs=55.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 137 VCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLK 197 (488)
Q Consensus 137 ~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LR 197 (488)
.+|+..||.|++..|.||++|+.+||.+|..|+.++..|..++..|..++..|..||..|+
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4788899999999999999999999999999999999998888888888888888887764
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.53 E-value=2.8e-07 Score=77.46 Aligned_cols=64 Identities=19% Similarity=0.196 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 133 EERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 133 EeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
.++...|..+|.++|++||.+++....+++.++..|+.||..|+.+|..|.. |...|+.-|..+
T Consensus 13 d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~-------E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSR-------ELSTLRNLFKQL 76 (87)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHC-
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHC
Confidence 3445555679999999999999999999999999999999999888887654 666666666555
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.45 E-value=5.6e-07 Score=74.25 Aligned_cols=54 Identities=22% Similarity=0.242 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 134 ERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQ 187 (488)
Q Consensus 134 eKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~ 187 (488)
++...|..+|.++|++||.+++....+++.++..|+.||..|+.+|..|..++.
T Consensus 14 ~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~ 67 (78)
T 1gu4_A 14 DEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELS 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444669999999999999999999999999999999999988887655433
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.31 E-value=2.3e-08 Score=87.00 Aligned_cols=57 Identities=30% Similarity=0.287 Sum_probs=45.9
Q ss_pred Cch-hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 127 LTE-AEKEERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAV 183 (488)
Q Consensus 127 lt~-eEkEeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~ 183 (488)
++. +..+.|.+||.+|||.+|+.||.||.+.+++||.++..|..+.+.|..++..|.
T Consensus 28 Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~ 85 (107)
T 3a5t_A 28 LSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMK 85 (107)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHH
T ss_pred CCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556 556999999999999999999999999999999888777666666555444443
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.17 E-value=1.3e-05 Score=68.02 Aligned_cols=71 Identities=24% Similarity=0.237 Sum_probs=55.6
Q ss_pred Cchhh-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 127 LTEAE-KEERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 127 lt~eE-kEeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
++.+| ...|..||.+|||.+|+-||.||....++||.++..|..+.+.|+.++..+.+ |-..+++.+..|+
T Consensus 18 ls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~-------e~d~~k~k~~~L~ 89 (90)
T 2wt7_B 18 FTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLAR-------ERDAYKVKSEKLA 89 (90)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhc
Confidence 66655 48899999999999999999999999999998888887777777666665544 5555666665553
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=96.98 E-value=0.0016 Score=48.37 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 155 QALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVA 201 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~ 201 (488)
|+|+.+||.++..|+..|.+|..++..| ..||.-||+-+.
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstL-------q~EN~mLRqvl~ 41 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTL-------QNENQMLRHILK 41 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHhc
Confidence 6899999999999999999887777765 568998888663
No 13
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=95.49 E-value=0.0079 Score=51.19 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=43.2
Q ss_pred ccccccccccccccccccccccccccccccccccCCCCCCCCCCCchhh-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 011345 83 RDQTACGNILIKPAKADQDAESLKRSSLCATRYISMAGGRSRQNLTEAE-KEERRVCRILANRESARQTIRRRQALCEEL 161 (488)
Q Consensus 83 ~~~p~s~~~v~~~~k~e~d~~v~l~sp~~~~~s~s~~~gRkR~~lt~eE-kEeKR~RRkiKNRESArRSR~RKQeyveEL 161 (488)
.+.|++...|+.+...|...-. +...|++++ ...|.+||..|||.+|+++|+||.+.+++|
T Consensus 27 l~lPfs~~eIv~lpv~efn~lL------------------k~~~Ls~~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l 88 (92)
T 1skn_P 27 NELPVSAFQISEMSLSELQQVL------------------KNESLSEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKM 88 (92)
T ss_dssp TTCSSCHHHHHHSCHHHHHHHH------------------HHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hCCCCCHHHHHHCcHHHHHHHH------------------HhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Confidence 3446666666666555533221 123366644 478899999999999999999999999887
Q ss_pred HH
Q 011345 162 TR 163 (488)
Q Consensus 162 E~ 163 (488)
+.
T Consensus 89 ~~ 90 (92)
T 1skn_P 89 SH 90 (92)
T ss_dssp --
T ss_pred hc
Confidence 64
No 14
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=94.37 E-value=0.19 Score=38.86 Aligned_cols=48 Identities=23% Similarity=0.328 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
.+.|-.+|+.|+.||..|+++++.-..++..|+.|-..+++-+..|++
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~ 52 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence 578899999999999999999999999999999999999998888764
No 15
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=93.24 E-value=0.19 Score=39.99 Aligned_cols=40 Identities=25% Similarity=0.254 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 159 EELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKA 198 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRa 198 (488)
..-|.+|..|..-|..|..++..++++++.|.+||..||.
T Consensus 23 aaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 23 ATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 3457889999999999999999999999999999999984
No 16
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=92.80 E-value=0.34 Score=42.00 Aligned_cols=45 Identities=20% Similarity=0.177 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKR-------EKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkk-------el~~L~qe~~~LesEN~~LRaqL~k 202 (488)
.-+||.++..++.||.+|+. ++..|..++..|..||..|+++-.-
T Consensus 39 Yl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 39 YLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34689999999999988887 6888888888999999988877643
No 17
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=91.40 E-value=0.73 Score=34.52 Aligned_cols=44 Identities=27% Similarity=0.345 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
.+..||.+|+.|+.||+.|++++-.-..-+.-|+.|-..||..+
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999987766666677777777777765
No 18
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=90.31 E-value=3.4 Score=38.03 Aligned_cols=76 Identities=17% Similarity=0.135 Sum_probs=57.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 011345 134 ERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMKSEVG 209 (488)
Q Consensus 134 eKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a~~~~ 209 (488)
...++.+.+.+.+.++.-....+.+.+-..-++.+..|...|.-++..+..++..|+.||..|-++..+..+.++.
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe 142 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKETE 142 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555556666666678889999999999999999999999999999999888877655544
No 19
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=89.94 E-value=1.3 Score=39.52 Aligned_cols=51 Identities=22% Similarity=0.206 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 153 RRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 153 RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
+.+...+.|+.+++.+..|...|+.++..++.+++.+..++..|+.++..|
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l 122 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKY 122 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666666666666666665555555555555555555444444
No 20
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=89.25 E-value=1.7 Score=36.30 Aligned_cols=44 Identities=32% Similarity=0.367 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 159 EELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
.-|..+++.|+.+|..|..+++.++.....|..+|..|+++...
T Consensus 23 ~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~ 66 (81)
T 2jee_A 23 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555566666666665543
No 21
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=88.82 E-value=0.5 Score=33.74 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVK 184 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~q 184 (488)
+|..||.+|+.|-.+|+.|..++..|+.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5788999999999999888877776643
No 22
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=88.81 E-value=0.43 Score=33.90 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAVK 184 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~q 184 (488)
|..||.+|+.|-.+|..|..++..|+.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 568999999999999988888877653
No 23
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=88.58 E-value=2 Score=33.81 Aligned_cols=35 Identities=29% Similarity=0.320 Sum_probs=22.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 139 RILANRESARQTIRRRQALCEELTRKAADLSQENE 173 (488)
Q Consensus 139 RkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~ 173 (488)
..-+||.+++++|.|=+..++-...-.+.-.+||+
T Consensus 5 kryknr~asrk~rakfkn~lqh~r~vaaaks~en~ 39 (63)
T 2c9l_Y 5 KRYKNRVAARKSRAKFKQLLQHYREVAAAKSSEND 39 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Confidence 34589999999999887766555444333333333
No 24
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=88.32 E-value=0.76 Score=33.20 Aligned_cols=29 Identities=21% Similarity=0.170 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVKE 185 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~qe 185 (488)
+|..||.+|+.|..+|+.|..++..|+.-
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 57889999999999999998888877653
No 25
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=87.64 E-value=0.73 Score=33.28 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVKEY 186 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~qe~ 186 (488)
+|..||.+|+.|..+|+.|..++..|+.-+
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 467899999999999999888888776543
No 26
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=87.30 E-value=3.6 Score=36.72 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 152 RRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 152 ~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
..=...+++++.++..|..++..++-+++.+.+++..|..++..|..++.+|.
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566677777777777777777777777777777777777777777764
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.68 E-value=6 Score=40.63 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 011345 154 RQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMKSEV 208 (488)
Q Consensus 154 KQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a~~~ 208 (488)
-++.++++..+.+.++.|..+|.++++..+++..++..||..+++++.+|....-
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 528 RRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444556666666777777778888888888888888888888888888865433
No 28
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=86.45 E-value=1.8 Score=37.30 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKELAV 183 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~ 183 (488)
.++.|..+++.|+.||.+|++++..|.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE 39 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLE 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666665554443
No 29
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=85.71 E-value=4.4 Score=46.46 Aligned_cols=56 Identities=13% Similarity=0.131 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 149 QTIRRRQALCEELTRKAADLSQENESLKREKE----LAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 149 RSR~RKQeyveELE~kV~~Le~EN~~Lkkel~----~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
..-...++.+++|+.++..+..|...|..++. .|++++..|+.||..|++++..|.
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555555544433 344556678888888888888775
No 30
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=85.52 E-value=0.076 Score=45.19 Aligned_cols=55 Identities=18% Similarity=0.140 Sum_probs=38.4
Q ss_pred cccccccccccccccccccccccccccccccccCCCCCCCCCCCchhh-HHHHHHHHHHHhhHHHHHHHHHHHH
Q 011345 84 DQTACGNILIKPAKADQDAESLKRSSLCATRYISMAGGRSRQNLTEAE-KEERRVCRILANRESARQTIRRRQA 156 (488)
Q Consensus 84 ~~p~s~~~v~~~~k~e~d~~v~l~sp~~~~~s~s~~~gRkR~~lt~eE-kEeKR~RRkiKNRESArRSR~RKQe 156 (488)
..|++...++.+...|...-+ ++..|++++ ...|.+||.-|||++||.+|+||.+
T Consensus 32 ~lPfs~~~Iv~lpv~efn~ll------------------~~~~Ls~~Ql~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 32 KIPFPTDKIVNLPVDDFNELL------------------ARYPLTESQLALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp TCSSCHHHHHHSCHHHHHHHH------------------HHSCCCHHHHHHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred CCCCCHHHHHHCcHHHHHHHH------------------HHcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 347777766666665543221 123477744 4789999999999999999999854
No 31
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=85.36 E-value=1 Score=32.13 Aligned_cols=28 Identities=11% Similarity=0.049 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVK 184 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~q 184 (488)
+|..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4788999999999998888887777654
No 32
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=85.36 E-value=4.1 Score=33.97 Aligned_cols=48 Identities=23% Similarity=0.280 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
-.+++|..+-..|..+|+.++.....|.+++..|..|-..-..+|..|
T Consensus 27 mEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 27 MEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544444444444444444444444444443
No 33
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=84.27 E-value=1.4 Score=33.77 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 163 RKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 163 ~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
..|+.|+.||..| +.++..|..++..|+++|.+
T Consensus 19 ~d~eaLk~E~~eL-------k~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 19 PEIELLRLELAEM-------KEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhc
Confidence 3455555555544 44555556677777776643
No 34
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=84.08 E-value=2.5 Score=34.59 Aligned_cols=49 Identities=20% Similarity=0.060 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
+++++||.+++-++.-.+.|...+..-++++..|..+.+.|..++..+.
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999999999998887765
No 35
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=84.05 E-value=4.1 Score=31.18 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 160 ELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 160 ELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
+|..++..|...|.+| ..-+.....+-..|+++|.+|
T Consensus 13 ~l~~~l~~L~~rN~rL-------~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKL-------METLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555 444445555666777777766
No 36
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=83.64 E-value=4.2 Score=31.03 Aligned_cols=41 Identities=17% Similarity=0.073 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 162 TRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 162 E~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
|.++..|+.-|..|..++..|+..|..++.||.+|+.-|..
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999988876643
No 37
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=82.89 E-value=3.7 Score=33.50 Aligned_cols=48 Identities=10% Similarity=0.151 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
..+..|+..++.-+.+-..++.++..+.+.+..-..+-..|++.|++|
T Consensus 21 ~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 21 GQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 344455555555555555555556666555555556666666666665
No 38
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=82.38 E-value=2.2 Score=30.33 Aligned_cols=27 Identities=4% Similarity=0.039 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAVK 184 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~q 184 (488)
|..||.+|+.|-.+|..|..++..|+.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 678899999888888888777776653
No 39
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=82.15 E-value=1.6 Score=31.26 Aligned_cols=28 Identities=11% Similarity=0.120 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVK 184 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~q 184 (488)
+|..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 5678899999888888888777776653
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.01 E-value=6.7 Score=40.29 Aligned_cols=54 Identities=15% Similarity=0.160 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 149 QTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 149 RSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
+....+++.++.|+.++..++...+..++++..++++...+..+.+.|.+.+.+
T Consensus 530 ~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 530 TEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334445566666666666666666666666666666666666665555554433
No 41
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=81.82 E-value=2.6 Score=34.94 Aligned_cols=48 Identities=15% Similarity=0.102 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
.|..|+..++.-+.+-..++.++..+.+.+..-..+-..||+.|++|.
T Consensus 28 ~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL~ 75 (79)
T 3cvf_A 28 QLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARLA 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 344555555555555555666666666666666666666677666663
No 42
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=81.71 E-value=1.7 Score=31.13 Aligned_cols=28 Identities=11% Similarity=0.111 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVK 184 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~q 184 (488)
+|..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4678899999998888888777776653
No 43
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=81.52 E-value=1.7 Score=34.98 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 011345 183 VKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 183 ~qe~~~LesEN~~LRaqL~kL~ 204 (488)
..+...|..+|..|+++|..|.
T Consensus 60 ~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 60 QQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444556777777776654
No 44
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=81.49 E-value=4.2 Score=31.20 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 179 KELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 179 l~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
+..|+.+...|+.+|..|+.++..|
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L 48 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLL 48 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555554444
No 45
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=81.28 E-value=3.7 Score=32.28 Aligned_cols=41 Identities=17% Similarity=0.077 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 162 TRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 162 E~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
|.++..|++.|..|..++..|+.+|...+.|+-+|..-|..
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888888888888888888876643
No 46
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=81.09 E-value=2.6 Score=29.96 Aligned_cols=27 Identities=15% Similarity=0.058 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAVK 184 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~q 184 (488)
|..||.+|+.|..+|..|..++..|+.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 678999999999988888887776653
No 47
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=80.85 E-value=2.8 Score=34.19 Aligned_cols=34 Identities=12% Similarity=0.200 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 154 RQALCEELTRKAADLSQENESLKREKELAVKEYQ 187 (488)
Q Consensus 154 KQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~ 187 (488)
-.+|+..|+.+...|..+++.|+.++..|.+++.
T Consensus 45 A~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 45 AKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578888888888777777777666666555443
No 48
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=80.37 E-value=2 Score=30.73 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVK 184 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~q 184 (488)
.|..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4678999999999988888877777654
No 49
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=79.50 E-value=7 Score=34.74 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 164 KAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 164 kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
+|..|+.|+..|..++..+..+++.|..+|..|..++..
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 355566666666666666666666666677666666544
No 50
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=77.69 E-value=3.4 Score=29.95 Aligned_cols=31 Identities=35% Similarity=0.364 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 168 LSQENESLKREKELAVKEYQSLETINKHLKA 198 (488)
Q Consensus 168 Le~EN~~Lkkel~~L~qe~~~LesEN~~LRa 198 (488)
.-.||+.|.++++.-..++..|..+|..|+.
T Consensus 5 ~L~ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 5 ALKENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 3578999999999999999999999998863
No 51
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=77.48 E-value=2.6 Score=41.51 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
.+.+|+.++..|...|..|...+. .+..|...|++++.+|.
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk-------~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLK-------EARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhc
Confidence 344566666666666665555544 45567777777777774
No 52
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=77.35 E-value=4 Score=31.21 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAVK 184 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~q 184 (488)
++.|..++..|+.++..|..++..|..
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 53
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=75.69 E-value=19 Score=30.08 Aligned_cols=60 Identities=27% Similarity=0.238 Sum_probs=42.9
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 129 EAEKEERRVCRILANRESARQTIRRR---QALCEELTRKAADLSQENESLKREKELAVKEYQS 188 (488)
Q Consensus 129 ~eEkEeKR~RRkiKNRESArRSR~RK---QeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~ 188 (488)
+++--+||.|=-+.=|.|-...|.|- +..+++|+.+-..|+.+...|..++..|..-+..
T Consensus 13 d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556667776666566655555543 4567889999999999999999999988765544
No 54
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=75.30 E-value=4.6 Score=28.15 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEY 186 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~ 186 (488)
+..||.+|+..+.||-.|.+++..|..+|
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 45678888888888888777777665543
No 55
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=74.92 E-value=4.7 Score=28.86 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 175 LKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 175 Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
+++++...++.++.|..+|..|.+|+..|
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 34555556666666677788887777554
No 56
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=74.69 E-value=7.7 Score=32.22 Aligned_cols=36 Identities=33% Similarity=0.324 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 168 LSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 168 Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
.-.||..|..+++.+..++..|..+|..|+.-+...
T Consensus 32 aL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~ 67 (79)
T 2zxx_A 32 ALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHV 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888888888888888888888887665543
No 57
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=74.40 E-value=7.7 Score=31.98 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 155 QALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
.+|+..|+.+...+..+. ..|..+|..|+.+|..|.
T Consensus 51 ~~YI~~L~~~~~~l~~~~--------------~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEE--------------DLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhh
Confidence 345555555554444444 345557777777777764
No 58
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=73.90 E-value=13 Score=32.35 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
.++++|..+..+..++....++++.+...+..|..+...|+.+|..
T Consensus 38 ~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 38 MLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666666666666666666655
No 59
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=73.87 E-value=17 Score=30.48 Aligned_cols=37 Identities=32% Similarity=0.353 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 167 DLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 167 ~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
..-.||..|..++..|..++..|..+|..|+.-+...
T Consensus 43 eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 43 EALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446889999999999998888999999888766554
No 60
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=72.77 E-value=12 Score=29.95 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 154 RQALCEELTRKAADLSQENESLKREKELAVKEYQSL 189 (488)
Q Consensus 154 KQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~L 189 (488)
-..|+..|+.++..|+.+.+.|+.++..|..++..|
T Consensus 45 Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 45 ATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777777777777777777777777766655443
No 61
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=72.77 E-value=18 Score=31.33 Aligned_cols=28 Identities=36% Similarity=0.329 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 155 QALCEELTRKAADLSQENESLKREKELA 182 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkkel~~L 182 (488)
-..+.+|+.+|..|..||..|..+.+..
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~ 91 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELH 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567889999999999998888776654
No 62
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=71.85 E-value=4.4 Score=31.26 Aligned_cols=27 Identities=11% Similarity=0.110 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 178 EKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 178 el~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
.+..|..++..|+.+|..|+.++..|.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~ 49 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLR 49 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666664
No 63
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=71.76 E-value=40 Score=28.14 Aligned_cols=60 Identities=13% Similarity=0.186 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 143 NRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 143 NRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
|-.||=.+--|-|+ -+..++...+..|-.+.+++.....++..|..+-..|+.++..|+.
T Consensus 14 eLQSALeaEIqAKQ---~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 14 ELQEALEEEVLTRQ---SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55555555444333 2333445667788888888888888888888888888888888754
No 64
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=71.15 E-value=4.3 Score=39.96 Aligned_cols=30 Identities=13% Similarity=0.086 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 175 LKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 175 Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
|.+++..|..+++.|..+.+.|+.+|.+|.
T Consensus 59 L~~ql~~L~arNe~L~~~Lk~ar~El~~Lk 88 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMETLKEARQQLLALR 88 (251)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445556666666666654
No 65
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=71.10 E-value=18 Score=29.64 Aligned_cols=45 Identities=11% Similarity=0.051 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 160 ELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 160 ELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
+|+..+..-..|.......|..|.+++...+.+.+.|+.++-+++
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333444444566666666777777777777777764
No 66
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=71.06 E-value=15 Score=30.15 Aligned_cols=50 Identities=14% Similarity=0.055 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
+.+.+=+.++..|+....--.+-.+.|..++-.+--||..|.+++.+|++
T Consensus 25 ~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 25 KELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 34444455566666555444455677788888899999999999988764
No 67
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=70.53 E-value=10 Score=32.12 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 172 NESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 172 N~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
...|..++..|+.+.+.|..||..+..++..+
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~ 81 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRLARERDAY 81 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666777887777777665
No 68
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=69.95 E-value=18 Score=27.21 Aligned_cols=41 Identities=17% Similarity=0.330 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 160 ELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 160 ELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
+||.+|..|+.-.+.|+.++..|..++. +-...|+++|.+|
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~---ssq~KlKqRit~l 42 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYN---ATQMKMKQRLSQL 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 5788888888888878777777655444 3455688888776
No 69
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=69.79 E-value=20 Score=30.11 Aligned_cols=36 Identities=31% Similarity=0.317 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 167 DLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 167 ~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
..-.||..|.++++.+..++..|..+|..|+.-...
T Consensus 35 eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 35 EALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344678888888888888888888888888765544
No 70
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=69.60 E-value=14 Score=37.74 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 011345 154 RQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMKSE 207 (488)
Q Consensus 154 KQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a~~ 207 (488)
.++.+++|+.++..|+.+.+.+..++..+.+++...+..-+.|.-+++.|.+..
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNI 61 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 456677788888888888888888888888888888888888888888886643
No 71
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=69.53 E-value=18 Score=27.65 Aligned_cols=31 Identities=13% Similarity=0.085 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 174 SLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 174 ~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
.|+.++..|..++..|....+.-+++|.+|.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lk 43 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALR 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555553
No 72
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=69.22 E-value=2.8 Score=34.73 Aligned_cols=30 Identities=33% Similarity=0.275 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 171 ENESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 171 EN~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
|.+.|+.+|..|..++..|+.||..||.-+
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445677777777777888888999988743
No 73
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=68.40 E-value=8.5 Score=29.37 Aligned_cols=30 Identities=17% Similarity=0.082 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011345 177 REKELAVKEYQSLETINKHLKAQVAKVMKS 206 (488)
Q Consensus 177 kel~~L~qe~~~LesEN~~LRaqL~kL~a~ 206 (488)
.-+..|..++..|+.+|..|+.++..|...
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788888899999999999999998653
No 74
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=68.09 E-value=31 Score=39.62 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 155 QALCEELTRKAADLSQENESLKREKELAVKEYQSL 189 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~L 189 (488)
+...++|+.+|..|+.||..|++++..|.......
T Consensus 1015 ~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 1015 DKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446788888888888888888877777444333
No 75
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=67.70 E-value=25 Score=30.21 Aligned_cols=22 Identities=36% Similarity=0.394 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011345 181 LAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 181 ~L~qe~~~LesEN~~LRaqL~k 202 (488)
..+.+...++..|..|+.||..
T Consensus 73 ~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 73 DARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666777777778777754
No 76
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=67.69 E-value=28 Score=28.78 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
.+++..++..++.+|..|..++..|+.+++.-..+-..++.++..+..
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e 55 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQ 55 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778889999999999999999999888888888888888877654
No 77
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=66.92 E-value=50 Score=26.86 Aligned_cols=47 Identities=6% Similarity=0.162 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 159 EELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
.++..++..++.+|..|..++..|+.+++.-..+-..++.++..+..
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e 49 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLE 49 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999998888888888888877654
No 78
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=66.68 E-value=17 Score=37.50 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMKSEV 208 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a~~~ 208 (488)
+.+++|..+++.|+.++..+..++..+.+++...+.+.+.|.-+++.+.+...
T Consensus 10 ~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIr 62 (412)
T 3u06_A 10 TEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIR 62 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 45667777777777777788888888888888888888999999999876533
No 79
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=66.58 E-value=10 Score=31.44 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011345 182 AVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 182 L~qe~~~LesEN~~LRaqL~kL 203 (488)
|..+++.|..|+..|+.++..+
T Consensus 35 LI~rvdELt~E~e~l~~El~s~ 56 (77)
T 2w83_C 35 LIAKVDELTCEKDVLQGELEAV 56 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3444455555555555544443
No 80
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=66.46 E-value=42 Score=25.83 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011345 181 LAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 181 ~L~qe~~~LesEN~~LRaqL~kL 203 (488)
.|+.+...|+.+|..|+.++..|
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L 49 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333
No 81
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=66.30 E-value=16 Score=39.44 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 149 QTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVA 201 (488)
Q Consensus 149 RSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~ 201 (488)
.....+.+|.++|+.++..|+.+...-...|..|+.-++.+..+-++|...|.
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666677788888877777766667777777777777777777766554
No 82
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=65.67 E-value=69 Score=28.09 Aligned_cols=63 Identities=17% Similarity=0.271 Sum_probs=38.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Q 011345 142 ANRESARQTIRRRQALCEELTRKAADLSQ---ENESLKREKELAVKEYQ-------SLETINKHLKAQVAKVM 204 (488)
Q Consensus 142 KNRESArRSR~RKQeyveELE~kV~~Le~---EN~~Lkkel~~L~qe~~-------~LesEN~~LRaqL~kL~ 204 (488)
.|-.+|.+.=..|+..+++|..++..+.. ...-|+.++......+. .+..+...|..++..|+
T Consensus 31 ~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq 103 (110)
T 2v4h_A 31 QQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ 103 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHH
Confidence 44556667777777788888777777666 44456666555443332 34555555666665554
No 83
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=65.34 E-value=14 Score=37.20 Aligned_cols=44 Identities=7% Similarity=-0.005 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
.+..||..|...+.+...|+..+..++.+++.|..+-..|+..+
T Consensus 13 ~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 13 EVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666665555555555544454443
No 84
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=65.06 E-value=11 Score=26.96 Aligned_cols=28 Identities=11% Similarity=0.051 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVK 184 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~q 184 (488)
.|..||.+|+.|-.+|..|..++..|++
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3677888888888888887777666543
No 85
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=64.58 E-value=12 Score=35.58 Aligned_cols=39 Identities=28% Similarity=0.264 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 162 TRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 162 E~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
+..|..|..||..|..++.....++..|..+-..|++++
T Consensus 19 d~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 19 DLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444445554444444444444444444444444443
No 86
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=64.47 E-value=26 Score=32.20 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 177 REKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 177 kel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
+-++.|+.++..|..++..|.+++.+|
T Consensus 96 K~~e~l~DEl~aLqlq~n~lE~kl~kL 122 (152)
T 3a7p_A 96 KNTERLNAALISGTIENNVLQQKLSDL 122 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444
No 87
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=63.77 E-value=6.6 Score=30.08 Aligned_cols=29 Identities=3% Similarity=0.044 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVK 184 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~q 184 (488)
++++.+...++.|..||..|+.++..|++
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666677777777666666655543
No 88
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=63.72 E-value=53 Score=27.54 Aligned_cols=8 Identities=38% Similarity=0.439 Sum_probs=4.1
Q ss_pred hHHHHHHH
Q 011345 144 RESARQTI 151 (488)
Q Consensus 144 RESArRSR 151 (488)
||+|+.-+
T Consensus 25 rEaA~Ee~ 32 (84)
T 1gmj_A 25 REQAEEER 32 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHhHHH
Confidence 45555544
No 89
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=63.61 E-value=26 Score=33.71 Aligned_cols=35 Identities=34% Similarity=0.359 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 169 SQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 169 e~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
-.||..|..+|..|..++..|..+|..|+.-+...
T Consensus 114 LeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~ 148 (209)
T 2wvr_A 114 LKENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 148 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777777777777777777655554
No 90
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=63.05 E-value=18 Score=29.80 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 159 EELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
++||.+|..|+.-...|+.++..|..++.. -...|+++|.+|-
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~s---sQ~KLKqRit~LE 45 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYES---MQQKLKQRLTKVE 45 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 457777777777777777766666544433 3445666666653
No 91
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=62.76 E-value=64 Score=32.46 Aligned_cols=38 Identities=18% Similarity=0.108 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 150 TIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQ 187 (488)
Q Consensus 150 SR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~ 187 (488)
-|.|.+++++....+...++.||++|++.++.+..++.
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
T 3oja_A 429 VQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALA 466 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhH
Confidence 34445555555556666666666666555555544433
No 92
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=62.69 E-value=61 Score=32.60 Aligned_cols=44 Identities=11% Similarity=0.130 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 159 EELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
.++|.+...++++.+..+.+++.++++.+.++.+...+..++.+
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 424 VEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence 34444444444444445555555555444444444444444433
No 93
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=62.05 E-value=30 Score=28.33 Aligned_cols=57 Identities=28% Similarity=0.211 Sum_probs=40.5
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 129 EAEKEERRVCRILANRESARQTIRRR---QALCEELTRKAADLSQENESLKREKELAVKE 185 (488)
Q Consensus 129 ~eEkEeKR~RRkiKNRESArRSR~RK---QeyveELE~kV~~Le~EN~~Lkkel~~L~qe 185 (488)
+++--+||.|=-++-|-|-...|.|- +..+++|+.+-..|+.+...|..++..|..-
T Consensus 13 d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556667765555555555555554 4567888899999999999999998888753
No 94
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=61.53 E-value=41 Score=29.07 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
+..-+.|.+++.|+.++..|+.++......+..+..+|..|..+..+.
T Consensus 11 ~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~~~~ 58 (125)
T 1joc_A 11 ERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQA 58 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence 344556667888888888888887777666777777788877665554
No 95
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=60.75 E-value=12 Score=30.22 Aligned_cols=59 Identities=15% Similarity=0.109 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 145 ESARQTIRRRQALCEELTRKAADL---SQENESLKRE---KELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 145 ESArRSR~RKQeyveELE~kV~~L---e~EN~~Lkke---l~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
.+-++-|.+=...+.+|..-|... .....-|... |..|+.+...|..+|..|+.+++..
T Consensus 12 ~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 12 AIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444455666666555432 1111223222 4456667777777777777777664
No 96
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=60.70 E-value=11 Score=25.97 Aligned_cols=18 Identities=50% Similarity=0.667 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 011345 187 QSLETINKHLKAQVAKVM 204 (488)
Q Consensus 187 ~~LesEN~~LRaqL~kL~ 204 (488)
..|+.||+.|++.+.+|.
T Consensus 9 asleaenkqlkakveell 26 (31)
T 1p9i_A 9 ASLEAENKQLKAKVEELL 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555543
No 97
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=59.98 E-value=4.2 Score=39.12 Aligned_cols=34 Identities=32% Similarity=0.340 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 011345 168 LSQENESLKREKELAVK---EYQSLETINKHLKAQVA 201 (488)
Q Consensus 168 Le~EN~~Lkkel~~L~q---e~~~LesEN~~LRaqL~ 201 (488)
|.+||++|++++..|+. ++..|+.||.+||+.|.
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLESEVADLKKENKDLKESLD 60 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555555544443 44567778998888763
No 98
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=59.75 E-value=50 Score=26.48 Aligned_cols=49 Identities=14% Similarity=0.149 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 144 RESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETI 192 (488)
Q Consensus 144 RESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesE 192 (488)
.+.|...-..-...+.+.+.+...++.+...|.+++..|..++..++..
T Consensus 15 ~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~ 63 (81)
T 1ic2_A 15 KENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSES 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344333333333444444444444444445555555544444444443
No 99
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=59.38 E-value=34 Score=27.61 Aligned_cols=29 Identities=24% Similarity=0.194 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 153 RRQALCEELTRKAADLSQENESLKREKEL 181 (488)
Q Consensus 153 RKQeyveELE~kV~~Le~EN~~Lkkel~~ 181 (488)
+--+|+..|+.++..|+.++..|+.+++.
T Consensus 47 ~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 47 KAIDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44689999999999999999988887764
No 100
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=59.25 E-value=4.9 Score=35.25 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKE 180 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~ 180 (488)
-+++|..++..|+-||..|++++.
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999998876
No 101
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=59.06 E-value=79 Score=26.43 Aligned_cols=72 Identities=21% Similarity=0.238 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 133 EERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 133 EeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
-...+..+.++|.....-....++....|..+=..+-.+-+.+..++-.+..+...|.++...-..+|.+|.
T Consensus 23 L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 23 LIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445556677777777777777777777777777777777777888888888888888888888888888875
No 102
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=58.59 E-value=51 Score=25.29 Aligned_cols=45 Identities=9% Similarity=0.109 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
+.+++|..+|..|..+...|...+..|+........|-.+-.++|
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356777777777777777777777777766665555544444433
No 103
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=58.12 E-value=1.2e+02 Score=28.23 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 148 RQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVA 201 (488)
Q Consensus 148 rRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~ 201 (488)
.--|.||+. .||...+..++..+..|...+..|......|+.+...|.++|.
T Consensus 28 ~~~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~ 79 (168)
T 3o0z_A 28 TAVRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILE 79 (168)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444544 4556666666666666666666655555555555555555443
No 104
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=57.36 E-value=47 Score=27.25 Aligned_cols=50 Identities=16% Similarity=0.087 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 155 QALCEELTRKAADLS-----QENESLKRE---KELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 155 QeyveELE~kV~~Le-----~EN~~Lkke---l~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
+..++.|...|..+. ....-|.+. |..|+.+...+..+...|+.+-..|.
T Consensus 22 n~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~ 79 (88)
T 1nkp_A 22 KRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLK 79 (88)
T ss_dssp HHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666555542 122223333 44555555566666666666665553
No 105
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=57.28 E-value=78 Score=31.67 Aligned_cols=31 Identities=23% Similarity=0.217 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 175 LKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 175 Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
|.+++..-++++++|+.|-..|.++|..+.+
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (471)
T 3mq9_A 434 LDAEKAQGQKKVEELEGEITTLNHKLQDASA 464 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555556777777777777777776643
No 106
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=56.95 E-value=58 Score=24.25 Aligned_cols=48 Identities=19% Similarity=0.086 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 153 RRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 153 RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
+.+.++++++.++.....+-..++.++..+.+.+.....+-..|+.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 9 TLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666555555555555555554
No 107
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=56.84 E-value=8.5 Score=26.00 Aligned_cols=24 Identities=33% Similarity=0.311 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 166 ADLSQENESLKREKELAVKEYQSL 189 (488)
Q Consensus 166 ~~Le~EN~~Lkkel~~L~qe~~~L 189 (488)
..|.+.|.+|++++..|.-++..|
T Consensus 3 rrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHh
Confidence 445666666666666655444433
No 108
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=55.96 E-value=49 Score=27.62 Aligned_cols=35 Identities=9% Similarity=0.116 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 155 QALCEELTRKAADLSQENESLKREKELAVKEYQSL 189 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~L 189 (488)
+.-.-.++.++...+..|..|..++..|++++..|
T Consensus 37 r~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 37 RTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555555544443
No 109
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=55.69 E-value=17 Score=28.48 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 176 KREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 176 kkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
+..+..|..++..|..+|..|+.++..|..
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777778888888888888887754
No 110
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=55.66 E-value=86 Score=25.83 Aligned_cols=47 Identities=13% Similarity=0.178 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
+-+|-.++..|+.|...|+-+++.+..++..+....+.+-.+|..+.
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl 68 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLS 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888888888888888888888888888888888888776543
No 111
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=55.17 E-value=55 Score=27.11 Aligned_cols=44 Identities=27% Similarity=0.377 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 159 EELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
++|=.+|..|..|+..|+.++..+++-...++..++.|.+++.+
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666777777777777777777777777777777776666644
No 112
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=55.12 E-value=67 Score=25.78 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQ 187 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~ 187 (488)
+.+|+.....|..||..|+.++..|..++.
T Consensus 38 v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 38 VVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555554444
No 113
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=54.95 E-value=60 Score=26.99 Aligned_cols=10 Identities=0% Similarity=-0.047 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q 011345 163 RKAADLSQEN 172 (488)
Q Consensus 163 ~kV~~Le~EN 172 (488)
.++..++..+
T Consensus 30 ~~~k~~e~~~ 39 (101)
T 3u59_A 30 ADKKQAEDRC 39 (101)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 114
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=53.74 E-value=18 Score=28.06 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAV 183 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~ 183 (488)
+++|+.+...|+.+...|..++..|.
T Consensus 32 ~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 32 CKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 115
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=53.69 E-value=47 Score=27.42 Aligned_cols=38 Identities=8% Similarity=0.001 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 154 RQALCEELTRKAADLSQENESLKREKELAVKEYQSLET 191 (488)
Q Consensus 154 KQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~Les 191 (488)
=+..++.|..+|..|.-.++.+..++..+.++...+-.
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~ 62 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILL 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555444444333
No 116
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=53.65 E-value=1.5e+02 Score=27.95 Aligned_cols=37 Identities=14% Similarity=0.114 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQSLETINK 194 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~ 194 (488)
+..|+.++..|...+..|+..+..|...+..|+...+
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R 126 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 126 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3444444444444444444444444444444444333
No 117
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=53.22 E-value=86 Score=25.09 Aligned_cols=52 Identities=10% Similarity=0.064 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 152 RRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 152 ~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
..-+..++.++.++...+..+..+..++..|++++..|+.+-..+..+|...
T Consensus 16 d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 16 ENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566677777777777777777778888888877777777666666554
No 118
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=53.06 E-value=42 Score=29.45 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 151 IRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 151 R~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
...-+.|+..|+.+|..|+.+...-+.. .+.+..+|..|+.++..+
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~-------~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQHL-------RQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 4555677788888888877777765544 344556777777777765
No 119
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=52.90 E-value=40 Score=25.16 Aligned_cols=37 Identities=30% Similarity=0.328 Sum_probs=20.9
Q ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 167 DLSQENESLKR------EKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 167 ~Le~EN~~Lkk------el~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
.|.+|.+.|++ ++..|..+++.|+..-..|+..++.|
T Consensus 4 alkselqalkkegfspeelaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 4 ALKSELQALKKEGFSPEELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444443 35556666666666666666666554
No 120
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=52.68 E-value=1.5e+02 Score=27.62 Aligned_cols=45 Identities=18% Similarity=0.252 Sum_probs=31.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 135 RRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREK 179 (488)
Q Consensus 135 KR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel 179 (488)
+....+..--+.=++.|.+..+.+.+|+.++..|..|..+++...
T Consensus 69 ke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~ 113 (168)
T 3o0z_A 69 KDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNL 113 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455556677888888888888888888888877766543
No 121
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=52.35 E-value=18 Score=35.78 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 162 TRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 162 E~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
+.+++.|+.+|+.|..+++.|+++.+.+...|...+.+|
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~rl~~L 222 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKANAERLKRL 222 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 345666666666666666666665555555544433333
No 122
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=51.64 E-value=1.1e+02 Score=25.68 Aligned_cols=31 Identities=10% Similarity=0.101 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 160 ELTRKAADLSQENESLKREKELAVKEYQSLE 190 (488)
Q Consensus 160 ELE~kV~~Le~EN~~Lkkel~~L~qe~~~Le 190 (488)
.++.++..++..+..+-.++..|++++..++
T Consensus 27 ~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE 57 (101)
T 3u1c_A 27 QAEADKKAAEERSKQLEDDIVQLEKQLRVTE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 123
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=51.08 E-value=25 Score=25.36 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 178 EKELAVKEYQSLETINKHLKAQVA 201 (488)
Q Consensus 178 el~~L~qe~~~LesEN~~LRaqL~ 201 (488)
++.....++..|+.+|+.|..++.
T Consensus 14 rlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 14 RFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667778888888888774
No 124
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=50.70 E-value=16 Score=30.33 Aligned_cols=19 Identities=37% Similarity=0.449 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESL 175 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~L 175 (488)
.+.+|+.++..|+.||.-|
T Consensus 23 ~I~EL~e~~~qLE~EN~~L 41 (78)
T 1dip_A 23 QIRELVEKNSQLERENTLL 41 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544
No 125
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=50.69 E-value=39 Score=32.02 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011345 159 EELTRKAADLSQENESLKREKE 180 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~ 180 (488)
..|..++..|+.++..|..+++
T Consensus 142 ~~L~~e~~~l~~~~~~l~~qlE 163 (213)
T 1ik9_A 142 EHLQKENERLLRDWNDVQGRFE 163 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444433333
No 126
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=50.50 E-value=1.7e+02 Score=27.61 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 164 KAADLSQENESLKREKELAVKEYQSLETINKHLKAQVA 201 (488)
Q Consensus 164 kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~ 201 (488)
.+..|+.+...|+..+..|...+..|+..|..|.....
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R 126 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 126 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 35555555555555555555566666666655554443
No 127
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=49.51 E-value=69 Score=27.78 Aligned_cols=71 Identities=20% Similarity=0.207 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011345 133 EERRVCRILANRESARQTIRR--RQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMKS 206 (488)
Q Consensus 133 EeKR~RRkiKNRESArRSR~R--KQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a~ 206 (488)
++|=.+-|+.| ||-=-.| =.=.++-|..+++.++.....+++++....+++..+.-....|..++..+.+.
T Consensus 8 EEKyrKAMVsn---AQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~ 80 (103)
T 4h22_A 8 EEKYKKAMVSN---AQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEA 80 (103)
T ss_dssp CCTHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667776 4332211 12346778899999999999999999999999999999999999999888654
No 128
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=49.10 E-value=0.71 Score=39.26 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=24.7
Q ss_pred CCchhh-HHHHHHHHHHHhhHHHHHHHHHHH
Q 011345 126 NLTEAE-KEERRVCRILANRESARQTIRRRQ 155 (488)
Q Consensus 126 ~lt~eE-kEeKR~RRkiKNRESArRSR~RKQ 155 (488)
.|+++. .-.+.+||.-+||.+||.+|+||.
T Consensus 56 ~Lt~~Ql~lIrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 56 QFNEAQLALIRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp CCCHHHHHHHHHHHHHSCSCCCCCCCSCCCC
T ss_pred CCCHHHHHHHHHHHHhhhhHHHHHHcchhhc
Confidence 467744 377889999999999999999874
No 129
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=49.00 E-value=1.1e+02 Score=25.05 Aligned_cols=51 Identities=22% Similarity=0.286 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 155 QALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
.....+|+.+...|..+...|..++..+...+..|......|..+|..+..
T Consensus 34 e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 34 ERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344467888999999999999988889999999999999999999988753
No 130
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=48.27 E-value=46 Score=31.62 Aligned_cols=36 Identities=22% Similarity=0.204 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVKEYQSLETI 192 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesE 192 (488)
.+.+|..++..|..+++....++..|++++..++.+
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~ 56 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQ 56 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555555554444444444444444443
No 131
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=48.10 E-value=35 Score=34.87 Aligned_cols=39 Identities=21% Similarity=0.138 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQSLETINKHL 196 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~L 196 (488)
++.|+.++..|+++...|.+++..++.++..+..+-...
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKE 43 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666665555555543333
No 132
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=47.39 E-value=1.3e+02 Score=27.37 Aligned_cols=58 Identities=16% Similarity=0.230 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 146 SARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 146 SArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
-|-|+-.+-+..++.||.++..-+..+..+..++.....++..+...|-+|.-.+..|
T Consensus 95 ~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~ 152 (155)
T 2efr_A 95 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 3445555555555666666655555555555555555555555555565555555544
No 133
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=47.18 E-value=26 Score=32.92 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKE 185 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe 185 (488)
++++-|=..+..|+.+|.+|+++++.|+++
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E 174 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRD 174 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554444444443
No 134
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=47.00 E-value=44 Score=25.56 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 159 EELTRKAADLSQENESLKREKELAVKEYQSLET 191 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~qe~~~Les 191 (488)
..||.-|+.|+..|..|.+.+..|.+.+..|+.
T Consensus 20 aklenivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 20 AKLENIVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 468888999999999988888887776665553
No 135
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=46.64 E-value=66 Score=26.11 Aligned_cols=48 Identities=6% Similarity=0.069 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011345 159 EELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMKS 206 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a~ 206 (488)
++||.++..|+....-+...|+.|...+..-..+...|+.++..|...
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~r 57 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLED 57 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888888877777777788888888777543
No 136
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=45.97 E-value=44 Score=27.08 Aligned_cols=30 Identities=30% Similarity=0.454 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 174 SLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 174 ~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
.|+.+...+..+.+.|..+|..|+++|..|
T Consensus 51 ~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 51 KLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344444455555666677888888877643
No 137
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=45.81 E-value=7.1 Score=39.30 Aligned_cols=43 Identities=12% Similarity=-0.012 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQ 199 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaq 199 (488)
.+..||.+|..++.+...|+..+..++.++..|...-..|...
T Consensus 5 ~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~ 47 (319)
T 1fzc_C 5 EIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 47 (319)
T ss_dssp -----CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666665555554444444433
No 138
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=45.78 E-value=1.5e+02 Score=25.61 Aligned_cols=42 Identities=14% Similarity=0.174 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 162 TRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 162 E~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
+.++..+..........+..|......++.+...|+.+|..+
T Consensus 82 e~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 82 EAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333344444444444444444443
No 139
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=45.66 E-value=41 Score=23.47 Aligned_cols=23 Identities=35% Similarity=0.242 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011345 175 LKREKELAVKEYQSLETINKHLK 197 (488)
Q Consensus 175 Lkkel~~L~qe~~~LesEN~~LR 197 (488)
|++++..|.+++..|..|-..|+
T Consensus 7 lkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444544444
No 140
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=45.44 E-value=1.5e+02 Score=25.75 Aligned_cols=43 Identities=12% Similarity=0.082 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL 200 (488)
+..|+.++..|...|..|...+..|.+.+..|+...+..-.-|
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SL 79 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSL 79 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhH
Confidence 4556666666666666666666666666665555555443333
No 141
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=45.29 E-value=66 Score=26.09 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKE 180 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~ 180 (488)
.++.|+.++..|+.+...|..++.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467777777777777777776664
No 142
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=45.08 E-value=96 Score=25.89 Aligned_cols=24 Identities=13% Similarity=0.061 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 177 REKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 177 kel~~L~qe~~~LesEN~~LRaqL 200 (488)
.++..|++++..-+.+-..|..+|
T Consensus 54 ~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 54 AEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444444444444444443
No 143
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=45.08 E-value=42 Score=31.53 Aligned_cols=32 Identities=25% Similarity=0.257 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQ 187 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~ 187 (488)
..+.+|..++..|+.+|++|+.+.+...++++
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678888888888888888888877666543
No 144
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=44.78 E-value=1.2e+02 Score=24.42 Aligned_cols=51 Identities=22% Similarity=0.257 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 011345 159 EELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMKSEVG 209 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a~~~~ 209 (488)
+.+...+..|+.+...++.+++...++++.|..-...|..+|+.+.....+
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLEG 58 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEG 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445555555555566666666677777777777777777776554433
No 145
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=44.78 E-value=16 Score=35.19 Aligned_cols=58 Identities=21% Similarity=0.185 Sum_probs=25.5
Q ss_pred HHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 133 EERRVCRILAN-------RESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLE 190 (488)
Q Consensus 133 EeKR~RRkiKN-------RESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~Le 190 (488)
+.+|.+|.++- |+..-.--.......+++..+++.+..||..++.+++.|+++..+.+
T Consensus 118 ~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~ 182 (250)
T 2ve7_C 118 KAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDT 182 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC----------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 67888887553 33333333333444445555555555555555555555554444333
No 146
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=44.62 E-value=1.5e+02 Score=25.35 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=32.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 011345 141 LANRESARQTIRRRQALCEELTRKAADLS---QENESLKREKELAVKEY 186 (488)
Q Consensus 141 iKNRESArRSR~RKQeyveELE~kV~~Le---~EN~~Lkkel~~L~qe~ 186 (488)
..|-.+|-..=..|+..+++|...+..++ ..+..|+.++......+
T Consensus 8 ~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF 56 (94)
T 3jsv_C 8 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADF 56 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777788888888999888888777 45556777766555443
No 147
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=44.44 E-value=19 Score=26.98 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREK 179 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel 179 (488)
.|++.|+.++..|+.....|...+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888777665543
No 148
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=44.38 E-value=1.1e+02 Score=23.81 Aligned_cols=56 Identities=20% Similarity=0.123 Sum_probs=33.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 139 RILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLK 197 (488)
Q Consensus 139 RkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LR 197 (488)
-..+||.-|-.-=. ..+++|...+..-..+....+.++..|.+.++.|+.|...||
T Consensus 21 ia~knr~EaE~~y~---~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 21 VAAKNLQEAEEWYK---SKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34456655543222 224567666666666666666677777777777766655554
No 149
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=44.03 E-value=22 Score=25.33 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 181 LAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 181 ~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
.|..+++.|..+|..|..++.+|..
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4566667777788888888777754
No 150
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=43.90 E-value=63 Score=24.73 Aligned_cols=47 Identities=23% Similarity=0.233 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 159 EELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
..+...+..|+.+...++.++....++++.|..-...|..+|+....
T Consensus 3 ~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRk 49 (59)
T 1gk6_A 3 KQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRK 49 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34566677777777777777777777888888877778777776644
No 151
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=43.87 E-value=1.1e+02 Score=25.49 Aligned_cols=19 Identities=5% Similarity=0.165 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011345 184 KEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 184 qe~~~LesEN~~LRaqL~k 202 (488)
+++..+..+|..|..++..
T Consensus 63 ~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 63 RQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333334333333333
No 152
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=43.86 E-value=1.7e+02 Score=25.69 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
+.|.-|+.++..++..-..=+.-=+.+..+.+.|..++..|..++.+|
T Consensus 62 E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 62 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 366777778877777665555555567777777777888887777654
No 153
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=43.72 E-value=47 Score=32.35 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=33.2
Q ss_pred HHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 137 VCRILANRESA-RQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 137 ~RRkiKNRESA-rRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
.=.-|+|||.. +.+|.||+.-.+++. .|+... --..++..|++++..++.+|..-.++|..
T Consensus 95 ~LK~IR~~E~svqp~R~~R~~l~~~I~----kLk~k~-P~s~kl~~LeqELvraEae~lvaEAqL~n 156 (234)
T 3plt_A 95 TLKSIRNIEASVQPSRDRKEKITDEIA----HLKYKD-PQSTKIPVLEQELVRAEAESLVAEAQLSN 156 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHC-TTCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH----HHhccC-CCCchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33556778765 666666666555553 222211 11234556666666666666666666544
No 154
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=43.50 E-value=26 Score=24.17 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAVK 184 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~q 184 (488)
|+.|..-++.|+.||..|+.+++.|..
T Consensus 1 mdqlnallasleaenkqlkakveella 27 (31)
T 1p9i_A 1 MDQLNALLASLEAENKQLKAKVEELLA 27 (31)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777889999999999998887643
No 155
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.11 E-value=38 Score=34.92 Aligned_cols=46 Identities=20% Similarity=0.245 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 160 ELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 160 ELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
+|..++..|+.+..-|..+.+.++.+...+..+...++.++..++.
T Consensus 46 dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 46 DIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3334444444444444444444444444455555556666666543
No 156
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=41.69 E-value=93 Score=28.62 Aligned_cols=56 Identities=14% Similarity=0.150 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 147 ARQTIRRRQALCEELTRKAADLSQEN-------ESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 147 ArRSR~RKQeyveELE~kV~~Le~EN-------~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
+.+-|.+|+-.++....++..+...- .....+++..++.+ +.-|..|+.+|+.+..
T Consensus 149 ~ikKR~~k~lDyD~~~~~l~kl~~k~~kd~~kl~kae~el~~ak~~y---e~ln~~L~~eLp~l~~ 211 (251)
T 2fic_A 149 RIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVF---EEMNVDLQEELPSLWN 211 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 33444445555555545555543221 12333344444443 4448888888888754
No 157
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=41.16 E-value=1.5e+02 Score=24.50 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 143 NRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQ 187 (488)
Q Consensus 143 NRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~ 187 (488)
..+.|..--..-...+..++.+...++.+...|++++..|..++.
T Consensus 17 e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld 61 (101)
T 3u59_A 17 DKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVE 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 334444333333444444444444444444444444444444433
No 158
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=40.74 E-value=64 Score=24.03 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKRE 178 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkke 178 (488)
....+||.+|..|+.||..|++-
T Consensus 17 ~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 17 NKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 34568888888888888877653
No 159
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=40.71 E-value=2.4e+02 Score=29.76 Aligned_cols=32 Identities=19% Similarity=0.095 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 173 ESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 173 ~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
+.|+.+...|.+++..|+.+...+.+++..+.
T Consensus 119 ~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 119 QSLRARGREIRKQLTLLYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666667777777777776654
No 160
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=40.52 E-value=33 Score=35.62 Aligned_cols=29 Identities=10% Similarity=-0.003 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 177 REKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 177 kel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
.++..|+..+..+...-..|+++|..|..
T Consensus 105 ~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 105 NTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34444444444455555556666666543
No 161
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=39.64 E-value=50 Score=26.96 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 152 RRRQALCEELTRKAADLSQENESLKREKEL 181 (488)
Q Consensus 152 ~RKQeyveELE~kV~~Le~EN~~Lkkel~~ 181 (488)
+.|.+.+++||.++.....+...|+.++..
T Consensus 36 r~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 36 RQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777766665543
No 162
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=39.55 E-value=45 Score=22.53 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011345 167 DLSQENESLKREKELAVKEYQSL 189 (488)
Q Consensus 167 ~Le~EN~~Lkkel~~L~qe~~~L 189 (488)
.|+.||..|.+++..|++++..|
T Consensus 4 alefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHh
Confidence 46667776666666655544443
No 163
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=38.19 E-value=2.8e+02 Score=27.60 Aligned_cols=7 Identities=43% Similarity=0.439 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 011345 9 AEALADL 15 (488)
Q Consensus 9 ae~ladl 15 (488)
.+.+.+|
T Consensus 206 l~~~~~l 212 (471)
T 3mq9_A 206 LTFLVDL 212 (471)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 164
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=38.17 E-value=1e+02 Score=33.45 Aligned_cols=28 Identities=14% Similarity=0.005 Sum_probs=0.0
Q ss_pred ccceeeeccCCCCCcccccCCCCCCCccc
Q 011345 354 LLPVKIKNEAYGLPEAQSYNDLNDIPVTE 382 (488)
Q Consensus 354 ~l~~~~k~e~~~~~e~~~~nd~~~~~~~~ 382 (488)
+-+--+.+.-.+|-..|+.| +.|-+...
T Consensus 369 s~~g~~rp~s~g~g~~rp~n-pdwg~f~e 396 (562)
T 3ghg_A 369 SESGSFRPDSPGSGNARPNN-PDWGTFEE 396 (562)
T ss_dssp -----------------------------
T ss_pred CCCCCcCCCCCCCCCCCCCC-CCCcceec
Confidence 33455666667777777775 34444433
No 165
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=37.94 E-value=60 Score=27.91 Aligned_cols=33 Identities=27% Similarity=0.302 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 171 ENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 171 EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
+...|+++|..|..+...|..++..|..+|...
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555677777777777777777777787777763
No 166
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=37.82 E-value=21 Score=28.50 Aligned_cols=43 Identities=12% Similarity=0.145 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 011345 155 QALCEELTRKAADLS----QENESLKRE---KELAVKEYQSLETINKHLK 197 (488)
Q Consensus 155 QeyveELE~kV~~Le----~EN~~Lkke---l~~L~qe~~~LesEN~~LR 197 (488)
...+++|..-|..+. ....-|... |..|+++.+.|..++..|+
T Consensus 28 n~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 28 KDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566665555442 122334433 3344444444444444444
No 167
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=37.27 E-value=1.7e+02 Score=27.58 Aligned_cols=58 Identities=7% Similarity=-0.015 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011345 149 QTIRRRQALCEELTRKAADLSQENESLKRE----------------KELAVKEYQSLETINKHLKAQVAKVMKS 206 (488)
Q Consensus 149 RSR~RKQeyveELE~kV~~Le~EN~~Lkke----------------l~~L~qe~~~LesEN~~LRaqL~kL~a~ 206 (488)
......+..+++++.++..++.+...++.+ +..|.+++..+..++..|..++..+...
T Consensus 46 ~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ 119 (256)
T 3na7_A 46 KAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNE 119 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555554444444433 4456666777777777777777776654
No 168
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=37.12 E-value=86 Score=26.16 Aligned_cols=17 Identities=12% Similarity=0.098 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011345 155 QALCEELTRKAADLSQE 171 (488)
Q Consensus 155 QeyveELE~kV~~Le~E 171 (488)
-+|+..|..++..+..+
T Consensus 38 vdYI~~Lq~e~~r~~e~ 54 (83)
T 4ath_A 38 VDYIRKLQREQQRAKDL 54 (83)
T ss_dssp HHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555444444333
No 169
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=36.88 E-value=1.9e+02 Score=25.20 Aligned_cols=39 Identities=26% Similarity=0.197 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKRE----KELAVKEYQSLETINKH 195 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkke----l~~L~qe~~~LesEN~~ 195 (488)
.++.|..+|..|..+++.++.+ +..|..++..|+.++..
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e 58 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAE 58 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554433 33334444444444333
No 170
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=36.83 E-value=38 Score=24.22 Aligned_cols=25 Identities=8% Similarity=0.116 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 180 ELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 180 ~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
..|..+++.|..+|..|..++.+|.
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3455556666666777776666664
No 171
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=36.59 E-value=39 Score=24.04 Aligned_cols=24 Identities=8% Similarity=0.182 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 181 LAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 181 ~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
.|..+++.|..+|..|..++.+|.
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 455556666667777777766664
No 172
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=36.35 E-value=19 Score=31.63 Aligned_cols=24 Identities=42% Similarity=0.391 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 179 KELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 179 l~~L~qe~~~LesEN~~LRaqL~k 202 (488)
++.|..++..|..||+.||.+|..
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777888889999999999965
No 173
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=35.91 E-value=1.4e+02 Score=22.54 Aligned_cols=36 Identities=31% Similarity=0.544 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 162 TRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 162 E~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
..+++.|+..|-.|.+.-+ .|+..-..|+.++++|-
T Consensus 9 rkkiarlkkdnlqlerdeq-------nlekiianlrdeiarle 44 (52)
T 3he5_B 9 RKKIARLKKDNLQLERDEQ-------NLEKIIANLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhHh-------hHHHHHHHHHHHHHHHH
Confidence 3445555555554433332 33334444555555553
No 174
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=35.73 E-value=2.4e+02 Score=25.11 Aligned_cols=48 Identities=17% Similarity=0.123 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
..+.|+.+...-.....+|+.+|..|.++++.+..+-..||.+...+.
T Consensus 58 L~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 58 LMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 445566666665666777888888888888888888888888777664
No 175
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=35.48 E-value=1.3e+02 Score=24.64 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 175 LKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 175 Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
+..++..|.+++..+..+-..|+.+|..+.
T Consensus 82 ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 82 LEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555555666666654
No 176
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=35.30 E-value=66 Score=28.07 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 160 ELTRKAADLSQENESLKREKELAVKE 185 (488)
Q Consensus 160 ELE~kV~~Le~EN~~Lkkel~~L~qe 185 (488)
+|..+|..|..++..|++++..|+.+
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~ 54 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSV 54 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555544443
No 177
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=35.28 E-value=43 Score=23.34 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 179 KELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 179 l~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
+..|.++..+.+.||-.|.++++.|
T Consensus 3 vaqlekevaqaeaenyqleqevaql 27 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQL 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4456667777888999998888776
No 178
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=34.84 E-value=3.9e+02 Score=27.31 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 173 ESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 173 ~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
+.|+.+...|..++..|+.+...+.+++..+.
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (421)
T 1ses_A 67 EALIARGKALGEEAKRLEEALREKEARLEALL 98 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777777777777777777776654
No 179
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=34.62 E-value=1.4e+02 Score=24.34 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 162 TRKAADLSQENESLKREKELAVKEYQSLE 190 (488)
Q Consensus 162 E~kV~~Le~EN~~Lkkel~~L~qe~~~Le 190 (488)
...|..|..|++.|..++..+++++..+.
T Consensus 3 ~k~v~~l~~E~eel~~klk~~~ee~~~~~ 31 (71)
T 1uix_A 3 TSDVANLANEKEELNNKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554444433
No 180
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=34.54 E-value=1.9e+02 Score=23.79 Aligned_cols=49 Identities=20% Similarity=0.201 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 155 QALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
++.++.|..--..|..=-..|..-+..|.++...|+..-..|+.....|
T Consensus 24 qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 24 QAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444445555555555665556666655555
No 181
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.10 E-value=69 Score=33.01 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKA 198 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRa 198 (488)
.+..|+.+...|..+++.|+.++..+++++..+..|...|+.
T Consensus 50 ~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 50 KLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345688888888888888888888888888888888777764
No 182
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=33.90 E-value=1.4e+02 Score=31.22 Aligned_cols=79 Identities=14% Similarity=0.081 Sum_probs=43.1
Q ss_pred CCCCCCchhhHHHHHHHHHHHhhHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 122 RSRQNLTEAEKEERRVCRILANRESARQ--------------------------TIRRRQALCEELTRKAADLSQENESL 175 (488)
Q Consensus 122 RkR~~lt~eEkEeKR~RRkiKNRESArR--------------------------SR~RKQeyveELE~kV~~Le~EN~~L 175 (488)
|-+..+++.|+..+....+|+|+..--. --.+=.+|.++||.++..|+.....-
T Consensus 53 rLqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q 132 (390)
T 1deq_A 53 RMKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQ 132 (390)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556667777777777777764331 01112345666666666666544443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 176 KREKELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 176 kkel~~L~qe~~~LesEN~~LRaqL 200 (488)
-..|..|+.-++.+..+-++|...|
T Consensus 133 ~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 133 VQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555555555555555555554
No 183
>2fgg_A Hypothetical protein RV2632C/MT2708; TB target, structural genomics, PSI, protein struct initiative, TB structural genomics consortium; 2.30A {Mycobacterium tuberculosis} SCOP: d.50.5.1
Probab=33.67 E-value=25 Score=30.38 Aligned_cols=20 Identities=40% Similarity=0.370 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q 011345 4 MELEAAEALADLAHLAMIEN 23 (488)
Q Consensus 4 ~e~eaae~ladla~lam~~~ 23 (488)
-||-+|.||.|||+-.+...
T Consensus 57 dElA~ARAL~dLA~qLl~~A 76 (101)
T 2fgg_A 57 DELAIARALSDLANQLFALT 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 39999999999999988754
No 184
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=33.54 E-value=1.3e+02 Score=27.65 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 011345 151 IRRRQALCEELTRKAA 166 (488)
Q Consensus 151 R~RKQeyveELE~kV~ 166 (488)
-++|++|+.+|..+..
T Consensus 21 I~~K~~~LqeL~~Q~v 36 (155)
T 2aze_A 21 IKQKQSQLQELILQQI 36 (155)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456666666654443
No 185
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=33.40 E-value=79 Score=22.60 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 181 LAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 181 ~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
.|..+++.|..+|..|..++.+|.
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHH
Confidence 344455555555555655555553
No 186
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=33.36 E-value=2.3e+02 Score=24.25 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
+.+..|+.++.....+...|..++..-.......+.++..|..+|..|.+
T Consensus 12 e~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666566666666666666666666644
No 187
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=33.16 E-value=1.6e+02 Score=23.93 Aligned_cols=31 Identities=32% Similarity=0.366 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 160 ELTRKAADLSQENESLKREKELAVKEYQSLE 190 (488)
Q Consensus 160 ELE~kV~~Le~EN~~Lkkel~~L~qe~~~Le 190 (488)
+|...|..|..|++.|..++..+++++..+.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777777777776666666665544
No 188
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=32.68 E-value=63 Score=23.10 Aligned_cols=10 Identities=40% Similarity=0.581 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 011345 166 ADLSQENESL 175 (488)
Q Consensus 166 ~~Le~EN~~L 175 (488)
..|+.+|..|
T Consensus 17 ddlkrQN~~L 26 (34)
T 1a93_B 17 DDLKRQNALL 26 (34)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 189
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=32.53 E-value=2.1e+02 Score=30.25 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 174 SLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 174 ~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
.|..+...|.+++..|+.+-..|.+++..+.
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l 105 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADKNLRSKI 105 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666677777777777777766654
No 190
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=32.50 E-value=1.8e+02 Score=24.56 Aligned_cols=24 Identities=8% Similarity=0.044 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 160 ELTRKAADLSQENESLKREKELAV 183 (488)
Q Consensus 160 ELE~kV~~Le~EN~~Lkkel~~L~ 183 (488)
.|+..+..++.....++.++..+.
T Consensus 99 ~l~~~~~~l~~~l~~l~~~i~~~~ 122 (133)
T 1fxk_C 99 ELESTLQKMGENLRAITDIMMKLS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 191
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=32.20 E-value=1.1e+02 Score=31.58 Aligned_cols=30 Identities=27% Similarity=0.329 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 160 ELTRKAADLSQENESLKREKELAVKEYQSL 189 (488)
Q Consensus 160 ELE~kV~~Le~EN~~Lkkel~~L~qe~~~L 189 (488)
+|+.++..|+++.+.|.+++..++.++..+
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~ 36 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETC 36 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443333333
No 192
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=32.17 E-value=2.7e+02 Score=28.81 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 174 SLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 174 ~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
.|..+...|.+++..|+.+...|.+++..+.
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 73 ELLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666777777777777776654
No 193
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=32.17 E-value=67 Score=27.66 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 179 KELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 179 l~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
+..++..+..|+.+-..+|+++...
T Consensus 77 l~~~q~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 77 LKDARNKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3344445556666666666666553
No 194
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=32.12 E-value=2.1e+02 Score=23.43 Aligned_cols=46 Identities=24% Similarity=0.200 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 159 EELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
.+|..++..-+.|..+|..=++.|+.++.....-|+.|..++..++
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q 51 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQ 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3555566666666666666666666666666666666666665543
No 195
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=31.97 E-value=36 Score=27.82 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011345 187 QSLETINKHLKAQVAKV 203 (488)
Q Consensus 187 ~~LesEN~~LRaqL~kL 203 (488)
..|..+|+.||.+|.++
T Consensus 46 arL~eq~~lLK~EIRRl 62 (71)
T 3bbp_D 46 AILMEQIKLLKSEIRRL 62 (71)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555555555554
No 196
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=31.85 E-value=2.2e+02 Score=36.85 Aligned_cols=43 Identities=19% Similarity=0.140 Sum_probs=21.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 142 ANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVK 184 (488)
Q Consensus 142 KNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~q 184 (488)
++-..|+..=..+++.+.+|+.+++.|+.+-+.+.++.+.|+.
T Consensus 2021 ~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~ 2063 (3245)
T 3vkg_A 2021 NAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKT 2063 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455566666666666665555544444444333
No 197
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=31.82 E-value=1e+02 Score=32.14 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKE 180 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~ 180 (488)
|.-|+.-|+.+..+.++|...|.
T Consensus 136 ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 136 INLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555554443
No 198
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=31.36 E-value=1.6e+02 Score=21.80 Aligned_cols=46 Identities=13% Similarity=0.097 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
...|+..+..+..+-..++.++..+..++..+...-...+..|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777766666677777777777777777766667666665
No 199
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=31.32 E-value=2.3e+02 Score=23.62 Aligned_cols=46 Identities=11% Similarity=0.176 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 144 RESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSL 189 (488)
Q Consensus 144 RESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~L 189 (488)
.+.|..--..-+..+..++.+...++.+...|.+++..|..++..+
T Consensus 18 ~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ 63 (101)
T 3u1c_A 18 KENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQV 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334333333344444444444444444444444444444444433
No 200
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=31.27 E-value=2e+02 Score=25.36 Aligned_cols=31 Identities=19% Similarity=0.332 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 159 EELTRKAADLSQENESLKREKELAVKEYQSL 189 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~L~qe~~~L 189 (488)
++|+.++..|+..|..|..++..+..++..|
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777877777777776666444
No 201
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=31.23 E-value=2.3e+02 Score=23.68 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKEL 181 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~ 181 (488)
++.-..++..|+.+..++++.|..
T Consensus 53 l~~h~~ei~~le~~i~rhk~~i~~ 76 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQSIKK 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444443333
No 202
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=30.96 E-value=43 Score=28.97 Aligned_cols=46 Identities=20% Similarity=0.261 Sum_probs=29.1
Q ss_pred hHHHHHHHH----HHHHHHHHHhCCCCCCccccccccccCcccccccccCCCCC
Q 011345 5 ELEAAEALA----DLAHLAMIENGGGSGAAETATIWGCKGKRVRKRVKTESPPG 54 (488)
Q Consensus 5 e~eaae~la----dla~lam~~~~~~~~~~~~~~~wg~kgkr~~kr~~~e~~p~ 54 (488)
|-+|-+||- ||+.-.+.=-++.. -.+.|-..|||.++-++.++|.+
T Consensus 54 eeeAr~AL~~~ngDl~~AI~~Lleg~~----~~~~W~~~~kKk~~~~~~~~~~~ 103 (104)
T 1wj7_A 54 QDECVIALHDCNGDVNRAINVLLEGNP----DTHSWEMVGKKKGVSGQKSGPSS 103 (104)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTCSS----SCSSCSSCCCCCCSSSSSSCCSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCC----cCCceeeecccccccCCCCCCCC
Confidence 557777886 34443322221111 35789999999999888777754
No 203
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=30.44 E-value=2.1e+02 Score=22.99 Aligned_cols=53 Identities=11% Similarity=0.072 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 149 QTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVA 201 (488)
Q Consensus 149 RSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~ 201 (488)
+-|..-+..+..||.++..++.+-+....+.+.|..-...|+.|-...|.-|.
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLE 57 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44667778889999999999999998888888888888889999888876553
No 204
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=30.28 E-value=2.2e+02 Score=24.47 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
.+..+...+..|+.+...++.++....++++.|..--..|..+|..+.
T Consensus 78 ~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYR 125 (131)
T 3tnu_A 78 QLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYR 125 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666666666666666666666666666665543
No 205
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=30.20 E-value=52 Score=23.51 Aligned_cols=24 Identities=8% Similarity=0.135 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 181 LAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 181 ~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
.|..+.+.|..+|..|..++.+|.
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455566666667777777776664
No 206
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=29.92 E-value=53 Score=23.47 Aligned_cols=26 Identities=12% Similarity=0.259 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 180 ELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 180 ~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
..|..+++.|..+|..|..++.+|..
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 34555666667777777777776643
No 207
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=29.62 E-value=28 Score=26.34 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011345 155 QALCEELTRKAADLSQENESL 175 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~L 175 (488)
..|+++||.+|..|+.....|
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 378888888888877665544
No 208
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=29.43 E-value=63 Score=28.22 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 173 ESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 173 ~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
..|..+++.|.+++..++.++..|+.++....
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788888888888888888887776653
No 209
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=29.36 E-value=2.3e+02 Score=23.00 Aligned_cols=51 Identities=20% Similarity=0.221 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 155 QALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 155 QeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
...++.+...+..++.+...++.++....++++.|..--..|..+|+.+..
T Consensus 27 ~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRk 77 (86)
T 1x8y_A 27 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRK 77 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345566777777777777777777777778888888877788877776543
No 210
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=28.96 E-value=1.5e+02 Score=23.37 Aligned_cols=27 Identities=22% Similarity=0.105 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAVK 184 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~q 184 (488)
-..|-.+|..|+..+....++++.|.+
T Consensus 20 n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 20 NVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888777777776543
No 211
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=28.64 E-value=1.5e+02 Score=29.90 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 168 LSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 168 Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
|+........++..|+..+..+...-..|+++|..|
T Consensus 17 ~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444433333
No 212
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=28.63 E-value=2.8e+02 Score=23.74 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMK 205 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a 205 (488)
.+..+...+..|+.+...++.++....++++.|..--..|..+|..+..
T Consensus 76 ~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRk 124 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRK 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556677777777777777777777788777777777777766543
No 213
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=28.19 E-value=2.9e+02 Score=23.76 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 179 KELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 179 l~~L~qe~~~LesEN~~LRaqL~k 202 (488)
+..++..+..|+.+-..+|+++..
T Consensus 79 l~~~q~~i~~lE~eL~~~r~em~~ 102 (131)
T 3tnu_A 79 LAQIQEMIGSVEEQLAQLRCEMEQ 102 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555566666666655544
No 214
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=27.85 E-value=60 Score=23.19 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 181 LAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 181 ~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
.|..+.+.|..+|..|..++.+|.
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 445555556666666666666664
No 215
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=27.25 E-value=57 Score=24.84 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011345 181 LAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 181 ~L~qe~~~LesEN~~LRaqL~kL 203 (488)
.+...+..|..||..|+.++..|
T Consensus 31 ~v~~~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 31 QVRKDYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667777777777665
No 216
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=27.22 E-value=2.1e+02 Score=23.26 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 175 LKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 175 Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
|..++..+..++..|+.+-..|..++.++
T Consensus 75 L~~~~e~ie~~i~~le~~~~~l~~~l~~l 103 (117)
T 2zqm_A 75 LKEKIETLEVRLNALERQEKKLNEKLKEL 103 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444433
No 217
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=26.68 E-value=3.7e+02 Score=24.55 Aligned_cols=19 Identities=37% Similarity=0.518 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011345 184 KEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 184 qe~~~LesEN~~LRaqL~k 202 (488)
.+...++..|..|+.++..
T Consensus 108 ~~~~~~e~r~~~L~~ql~e 126 (154)
T 2ocy_A 108 KEKYAIEILNKRLTEQLRE 126 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555544
No 218
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=26.34 E-value=1.1e+02 Score=21.16 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011345 159 EELTRKAADLSQENESLKREKEL 181 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkkel~~ 181 (488)
+.||.+.+.|++..+.|.++++.
T Consensus 4 ealekkcaalesklqalekklea 26 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEA 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555444443
No 219
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=26.12 E-value=39 Score=29.18 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011345 186 YQSLETINKHLKAQVAKV 203 (488)
Q Consensus 186 ~~~LesEN~~LRaqL~kL 203 (488)
...|+.+|..|..+++.|
T Consensus 93 ~~~l~~~n~~L~~riqeL 110 (118)
T 4ati_A 93 QKKLEHANRHLLLRVQEL 110 (118)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344666777777777665
No 220
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=25.55 E-value=1.4e+02 Score=20.83 Aligned_cols=11 Identities=36% Similarity=0.389 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 011345 165 AADLSQENESL 175 (488)
Q Consensus 165 V~~Le~EN~~L 175 (488)
++.|+.|...|
T Consensus 11 iaalkkeiaal 21 (33)
T 4dzn_A 11 IAALKKEIAAL 21 (33)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 221
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=25.23 E-value=1.5e+02 Score=20.61 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 160 ELTRKAADLSQENESLKREKELAVK 184 (488)
Q Consensus 160 ELE~kV~~Le~EN~~Lkkel~~L~q 184 (488)
.|..+|..|...|-.-+++++.|+.
T Consensus 5 alkkrvqalkarnyaakqkvqalrh 29 (33)
T 1fmh_B 5 ALKKRVQALKARNYAAKQKVQALRH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4455555555555555555554443
No 222
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=24.93 E-value=3.3e+02 Score=23.36 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
+.+.+.++..|......|..++..+..++...+..|..|.+.-.++
T Consensus 64 l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkl 109 (129)
T 2fxo_A 64 LADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKL 109 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555566666666666666666666665555444
No 223
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=24.23 E-value=1.8e+02 Score=24.30 Aligned_cols=39 Identities=10% Similarity=0.191 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 161 LTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 161 LE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
|...+..+..|...|+.++..|+ .|..+-+.|-.-|.+|
T Consensus 43 Lh~~ie~~~eEi~~Lk~en~~L~----elA~~~q~la~~i~~L 81 (83)
T 1wlq_A 43 LHKEIEQKDSEIARLRKENKDLA----EVAEHVQYMAEVIERL 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 33334444444444444433332 2333444444444444
No 224
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=24.19 E-value=5.7e+02 Score=27.71 Aligned_cols=17 Identities=12% Similarity=0.018 Sum_probs=11.0
Q ss_pred HhCCCCCCccccccccc
Q 011345 22 ENGGGSGAAETATIWGC 38 (488)
Q Consensus 22 ~~~~~~~~~~~~~~wg~ 38 (488)
..|++-++.-+...||.
T Consensus 123 ~~g~fags~vGV~i~Gm 139 (551)
T 2b5u_A 123 LKGPFKFGLWGVALYGV 139 (551)
T ss_dssp HTSCCSSSCEEEEEEEE
T ss_pred hhccccccceeeEEeee
Confidence 34566666667777776
No 225
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=24.06 E-value=1.9e+02 Score=27.47 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 151 IRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 151 R~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
..||.+.++-|..++..|..+-+.|..++. .|..|.+.+..+.
T Consensus 14 ~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~-----------~N~~lG~~vea~V 56 (190)
T 3thf_A 14 KQKMDELIKHLNQKIVSLKREQQTISEECS-----------ANDRLGQDLFAKL 56 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhHHHHHHH
Confidence 478889999999999999999888877665 5666666666554
No 226
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=23.64 E-value=1.1e+02 Score=24.57 Aligned_cols=16 Identities=25% Similarity=0.191 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 011345 189 LETINKHLKAQVAKVM 204 (488)
Q Consensus 189 LesEN~~LRaqL~kL~ 204 (488)
-..+++.|+.+|.+++
T Consensus 37 kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 37 KEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555666666664
No 227
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=23.42 E-value=3.3e+02 Score=23.20 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203 (488)
Q Consensus 156 eyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL 203 (488)
+.+.-|+.+|..++..-..=+.--+.+..+.+.|..++..|+.++.+|
T Consensus 40 E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 87 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 666677777777766555444444445555555555555555555554
No 228
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=23.19 E-value=2.3e+02 Score=29.96 Aligned_cols=41 Identities=10% Similarity=0.075 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 164 KAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 164 kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
++..|..+-..|+.++..|..+...++.+-..+...|..+.
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~~ 157 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQT 157 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34456666666777777777777777776555555555553
No 229
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=22.14 E-value=4.9e+02 Score=24.39 Aligned_cols=66 Identities=11% Similarity=0.194 Sum_probs=52.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011345 141 LANRESARQTIRRRQALCEELTRKAADLSQE---------NESLKREKELAVKEYQSLETINKHLKAQVAKVMKS 206 (488)
Q Consensus 141 iKNRESArRSR~RKQeyveELE~kV~~Le~E---------N~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a~ 206 (488)
..-.....+...+....++++..++...+.. ...|.++++.+..+...++.+-..+..++..+...
T Consensus 52 ~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~ 126 (256)
T 3na7_A 52 EEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEK 126 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677777888888888888877764 45699999999999999999999999999888544
No 230
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=21.96 E-value=2.6e+02 Score=23.52 Aligned_cols=38 Identities=8% Similarity=0.107 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 158 CEELTRKAADLSQENESLKREKELAVKEYQSLETINKH 195 (488)
Q Consensus 158 veELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~ 195 (488)
++.|+.++..|+.....|.+.+..++.++..+..+-+.
T Consensus 90 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~ 127 (133)
T 1fxk_C 90 MESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEE 127 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666667666666666666666655555554444333
No 231
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=21.35 E-value=3.6e+02 Score=22.49 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVKEYQSLET 191 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~qe~~~Les 191 (488)
.+.+|.-+|..++.|.....+++..-..++..|..
T Consensus 27 Ei~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~ 61 (81)
T 3qh9_A 27 ELRHLKIKVEELENERNQYEWKLKATKAEVAQLQE 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44555555555555554444444444443333333
No 232
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=21.28 E-value=3.6e+02 Score=22.47 Aligned_cols=50 Identities=14% Similarity=0.232 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMKS 206 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~a~ 206 (488)
.+..+...+..|+.+...++.++....++++.|..-...|..+|..+...
T Consensus 38 e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkL 87 (95)
T 3mov_A 38 EKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKL 87 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777777777777778888888878888888776543
No 233
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=21.02 E-value=5.3e+02 Score=27.63 Aligned_cols=75 Identities=12% Similarity=0.094 Sum_probs=42.5
Q ss_pred CCchhhHHHHHHHHHHHhhHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 126 NLTEAEKEERRVCRILANRESAR--------------------------QTIRRRQALCEELTRKAADLSQENESLKREK 179 (488)
Q Consensus 126 ~lt~eEkEeKR~RRkiKNRESAr--------------------------RSR~RKQeyveELE~kV~~Le~EN~~Lkkel 179 (488)
.+.+-|+.-+....+|+|+..-- .-=.+=.+|.++||.++..|+.....--..|
T Consensus 55 lL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~I 134 (491)
T 1m1j_A 55 IIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRI 134 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446667777777777765321 1122234566677777776666544433556
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011345 180 ELAVKEYQSLETINKHLKAQV 200 (488)
Q Consensus 180 ~~L~qe~~~LesEN~~LRaqL 200 (488)
..|+.-++.+..+-++|...|
T Consensus 135 rvLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 135 KALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666665555555555544
No 234
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=20.99 E-value=2.3e+02 Score=29.36 Aligned_cols=45 Identities=7% Similarity=0.009 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 157 LCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVA 201 (488)
Q Consensus 157 yveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~ 201 (488)
.+..||..+...+.+...|+..+..++.+++.|...-..|...+.
T Consensus 92 ~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~~ 136 (409)
T 1m1j_C 92 EIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHCQ 136 (409)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 445555555555556666666666666666666555555554443
No 235
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=20.96 E-value=1.1e+02 Score=21.79 Aligned_cols=24 Identities=8% Similarity=-0.004 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 011345 181 LAVKEYQSLETINKHLKAQVAKVM 204 (488)
Q Consensus 181 ~L~qe~~~LesEN~~LRaqL~kL~ 204 (488)
.|..+.+.|..+|..|..++.+|.
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344445555556666666665554
No 236
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=20.90 E-value=73 Score=27.44 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 011345 154 RQALCEELTRKAADLSQE---NESLKREKELAVKEYQSLE 190 (488)
Q Consensus 154 KQeyveELE~kV~~Le~E---N~~Lkkel~~L~qe~~~Le 190 (488)
--+|+..|+.++..|..+ +..|......|..+++.|+
T Consensus 72 aieYIk~Lq~~~~~l~~~~~~~~~l~~~n~~L~~riqeLE 111 (118)
T 4ati_A 72 SVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELE 111 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHCC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777666666554 3334444444444444443
No 237
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=20.84 E-value=1.5e+02 Score=26.59 Aligned_cols=19 Identities=11% Similarity=-0.121 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011345 159 EELTRKAADLSQENESLKR 177 (488)
Q Consensus 159 eELE~kV~~Le~EN~~Lkk 177 (488)
..||.++..++.....+..
T Consensus 3 ~~l~~~~~~~~~~~~~~~~ 21 (192)
T 2gkw_A 3 GLLESQLSRHDQMLSVHDI 21 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555444443333
No 238
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=20.72 E-value=2.9e+02 Score=21.11 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011345 165 AADLSQENESLKREKELAVK 184 (488)
Q Consensus 165 V~~Le~EN~~Lkkel~~L~q 184 (488)
+..|..+...|..++..|..
T Consensus 6 i~~Lss~V~~L~~kVdqLss 25 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASN 25 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444333333333
No 239
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=20.69 E-value=2e+02 Score=20.12 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011345 161 LTRKAADLSQENESLKREKELA 182 (488)
Q Consensus 161 LE~kV~~Le~EN~~Lkkel~~L 182 (488)
||..+..|..-.++|++++..|
T Consensus 4 lee~~r~l~~ivq~lq~r~drl 25 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554444443
No 240
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=20.50 E-value=55 Score=31.38 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011345 175 LKREKELAVKEYQSLET 191 (488)
Q Consensus 175 Lkkel~~L~qe~~~Les 191 (488)
|.++++.|++++..|+.
T Consensus 24 l~~eN~~Lk~e~~~l~~ 40 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQ 40 (255)
T ss_dssp --CTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555444443
No 241
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.37 E-value=2.8e+02 Score=22.53 Aligned_cols=13 Identities=15% Similarity=0.325 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 011345 188 SLETINKHLKAQV 200 (488)
Q Consensus 188 ~LesEN~~LRaqL 200 (488)
.+..+-..|+.++
T Consensus 89 ~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 89 ELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 242
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=20.37 E-value=1.6e+02 Score=21.92 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 165 AADLSQENESLKREKELAVKEYQS 188 (488)
Q Consensus 165 V~~Le~EN~~Lkkel~~L~qe~~~ 188 (488)
++.|++|.+.|.+++..|..+++.
T Consensus 22 laaleselqalekklaalksklqa 45 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555554554444444443
No 243
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=20.33 E-value=3.5e+02 Score=23.20 Aligned_cols=43 Identities=12% Similarity=0.056 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 160 ELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAK 202 (488)
Q Consensus 160 ELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~k 202 (488)
.|-.+.-..+.|.+.|+.++..|++.+...+.-...|....+.
T Consensus 8 ~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~ 50 (125)
T 1joc_A 8 ALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQS 50 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3444455566778888888888887777666665555444333
No 244
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=20.24 E-value=2e+02 Score=27.47 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=15.1
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 011345 159 EELTRKAADLS---QENESLKREKELAVKEYQ 187 (488)
Q Consensus 159 eELE~kV~~Le---~EN~~Lkkel~~L~qe~~ 187 (488)
.+||.++..|- .+|+.+..++..+..++-
T Consensus 82 ~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l~LL 113 (252)
T 3e98_A 82 IEMRHRLSQLMDVARENDRLFDKTRRLVLDLL 113 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555544333 366666666655554443
No 245
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=20.11 E-value=3.4e+02 Score=25.36 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011345 152 RRRQALCEELTRKAADLSQENESL 175 (488)
Q Consensus 152 ~RKQeyveELE~kV~~Le~EN~~L 175 (488)
.+-+..++.||.++...+.++..+
T Consensus 138 ~kLqkeiD~LEDeL~~eKek~k~i 161 (175)
T 3mud_A 138 AKNEKSIDDLEEKVAHAKEENLNM 161 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444333333333
Done!