BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011347
(488 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M548|DRM2_ARATH DNA (cytosine-5)-methyltransferase DRM2 OS=Arabidopsis thaliana
GN=DRM2 PE=1 SV=1
Length = 626
Score = 295 bits (754), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 146/339 (43%), Positives = 205/339 (60%), Gaps = 13/339 (3%)
Query: 152 RSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLP 211
RS+ ++ PP+F+Y NV W +S L+ + PEFV+S+YF +R+ GY+HNLP
Sbjct: 297 RSLPELARGPPFFYYENVALTPKGVWETISRHLFEIPPEFVDSKYFCVAARKRGYIHNLP 356
Query: 212 TTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSR 271
NRF I P P TI DA P +K+WWP WD R L+CI + T G +QL R L
Sbjct: 357 INNRFQIQPPPKYTIHDAFPLSKRWWPEWDKRTKLNCILTCT-GSAQLTNRIRVALEPYN 415
Query: 272 GVLSSQQ--QRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARL 329
+ QR ++ + +K NLVWVG K P++P+ +E ILG+P NHT+ G S T R
Sbjct: 416 EEPEPPKHVQRYVIDQCKKWNLVWVGKNKAAPLEPDEMESILGFPKNHTRGGGMSRTERF 475
Query: 330 ESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSE 389
+SL + FQ DT+ YHLSVLK +FP G+ +LS+F+GIGG EV LHRL IK+K V+S+E S+
Sbjct: 476 KSLGNSFQVDTVAYHLSVLKPIFPHGINVLSLFTGIGGGEVALHRLQIKMKLVVSVEISK 535
Query: 390 TNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQ 449
NR ILK +WE + QTGEL++ DIQ LT E L+ K G D VI + + +
Sbjct: 536 VNRNILKDFWEQTNQTGELIEFSDIQHLTNDTIEGLMEKYGGFDLVIGGSPCNNLAGGNR 595
Query: 450 ISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR 488
+S ++ E D SL++E+ R+++ VR+ R
Sbjct: 596 VS-----RVGLEGDQ-----SSLFFEYCRILEVVRARMR 624
Score = 36.6 bits (83), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 7 LLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQI 42
L++MGFSE + SLA+E+ G I+EL D + + Q+
Sbjct: 201 LVKMGFSELEASLAVERCGENVDIAELTDFLCAAQM 236
>sp|Q9LXE5|DRM1_ARATH DNA (cytosine-5)-methyltransferase DRM1 OS=Arabidopsis thaliana
GN=DRM1 PE=4 SV=2
Length = 624
Score = 274 bits (701), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 161/486 (33%), Positives = 249/486 (51%), Gaps = 59/486 (12%)
Query: 3 ITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYC 62
I L++MG+ ++AIE+ G + E+ D I + Q+ +R +D + Y
Sbjct: 194 ILQALIKMGYLREDAAIAIERCGEDASMEEVVDFICAAQM------ARQFDEI-----YA 242
Query: 63 SPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSS 122
PD + MN ++ R + P++ + D
Sbjct: 243 EPD---KKELMNNNKKRRTYT---------------------------ETPRKPNTDQLI 272
Query: 123 SFLDSSWEEKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSH 182
S V PN M + I + PP+F+Y NV W K+S
Sbjct: 273 SLPKEMIGFGV-PNHPGLMMHRPV------PIPDIARGPPFFYYENVAMTPKGVWAKISS 325
Query: 183 FLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDT 242
LY + PEFV+S++F A +R+ GY+HNLP NRF I P TIQ+A P TK+WWPSWD
Sbjct: 326 HLYDIVPEFVDSKHFCAAARKRGYIHNLPIQNRFQIQPPQHNTIQEAFPLTKRWWPSWDG 385
Query: 243 RKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPV 302
R L+C+ + + S+L E+ + L G Q+ +++ +K NLVWVG KL P+
Sbjct: 386 RTKLNCLLTCIAS-SRLTEKIREALERYDGETPLDVQKWVMYECKKWNLVWVGKNKLAPL 444
Query: 303 DPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVF 362
D + +E +LG+P +HT+ G S T R +SL + FQ DT+ YHLSVLK +FP G+ +LS+F
Sbjct: 445 DADEMEKLLGFPRDHTRGGGISTTDRYKSLGNSFQVDTVAYHLSVLKPLFPNGINVLSLF 504
Query: 363 SGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKF 422
+GIGG EV LHRL IK+ V+S+E S+ NR IL+ +WE + Q G L + +D+Q L
Sbjct: 505 TGIGGGEVALHRLQIKMNVVVSVEISDANRNILRSFWEQTNQKGILREFKDVQKLDDNTI 564
Query: 423 ESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQR 482
E L+ + G D VI + P + ++ ++ ++ SL++++ R+++
Sbjct: 565 ERLMDEYGGFDLVIGGS-----PCNNLAGGNRHHRVGLGGEH-----SSLFFDYCRILEA 614
Query: 483 VRSMKR 488
VR R
Sbjct: 615 VRRKAR 620
>sp|Q5ZKH8|ODR4_CHICK Protein odr-4 homolog OS=Gallus gallus GN=ODR4 PE=2 SV=1
Length = 446
Score = 38.9 bits (89), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 293 WVGAYKLGPVDPEHIELILGY--PSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS 350
+V +G P+ +I P Q GN+ ++L+S+ + T H S +
Sbjct: 25 YVTGLLIGQCSPQRDYIIRAARTPPKEEQKEGNTSPSKLDSIDEEWFT----AHASQISR 80
Query: 351 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK 396
M PGGL +LSVF I E++ K + SIE S T RR+ K
Sbjct: 81 MLPGGLLVLSVFI-IATPELSKDCQNTLRKLIFSIEKSLTKRRLWK 125
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 179,962,254
Number of Sequences: 539616
Number of extensions: 7466361
Number of successful extensions: 19362
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 19347
Number of HSP's gapped (non-prelim): 23
length of query: 488
length of database: 191,569,459
effective HSP length: 121
effective length of query: 367
effective length of database: 126,275,923
effective search space: 46343263741
effective search space used: 46343263741
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)