Query 011347
Match_columns 488
No_of_seqs 212 out of 1027
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 00:20:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011347.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011347hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00145 DNA_methylase: C-5 cy 99.9 2.4E-25 5.2E-30 217.9 8.6 105 356-487 1-105 (335)
2 COG0270 Dcm Site-specific DNA 99.9 4.9E-25 1.1E-29 223.8 9.1 109 354-486 2-110 (328)
3 PRK10458 DNA cytosine methylas 99.9 3.9E-23 8.4E-28 219.8 10.8 126 354-487 87-222 (467)
4 cd00315 Cyt_C5_DNA_methylase C 99.9 8.9E-23 1.9E-27 202.7 8.6 106 356-487 1-106 (275)
5 TIGR00675 dcm DNA-methyltransf 99.9 1.3E-22 2.9E-27 205.2 9.1 103 358-487 1-103 (315)
6 KOG0919 C-5 cytosine-specific 99.3 3E-12 6.4E-17 126.7 6.7 111 354-486 2-112 (338)
7 cd00315 Cyt_C5_DNA_methylase C 99.3 3.5E-12 7.6E-17 127.2 6.5 157 159-348 102-273 (275)
8 PRK10458 DNA cytosine methylas 98.7 1.3E-08 2.9E-13 109.2 4.9 56 296-351 398-455 (467)
9 PF00145 DNA_methylase: C-5 cy 98.5 2.6E-08 5.6E-13 97.9 1.0 54 293-348 280-333 (335)
10 PF13659 Methyltransf_26: Meth 98.0 1.6E-05 3.5E-10 67.5 6.9 83 355-445 1-84 (117)
11 TIGR00675 dcm DNA-methyltransf 98.0 1.1E-06 2.5E-11 89.5 -0.4 177 158-341 98-308 (315)
12 COG0270 Dcm Site-specific DNA 97.7 1.7E-05 3.7E-10 81.4 2.6 176 158-349 106-321 (328)
13 PF03602 Cons_hypoth95: Conser 97.6 0.00011 2.5E-09 69.9 5.7 82 354-441 42-124 (183)
14 TIGR03704 PrmC_rel_meth putati 97.4 0.00028 6.1E-09 70.0 7.0 80 355-446 87-168 (251)
15 COG2520 Predicted methyltransf 97.4 0.00023 4.9E-09 74.3 6.4 95 336-441 171-266 (341)
16 TIGR00095 RNA methyltransferas 97.4 0.00038 8.2E-09 66.4 7.3 83 354-442 49-132 (189)
17 PF02475 Met_10: Met-10+ like- 97.4 0.00036 7.9E-09 67.7 6.9 81 352-442 99-180 (200)
18 PF09445 Methyltransf_15: RNA 97.3 0.00034 7.3E-09 66.1 5.2 82 357-447 2-85 (163)
19 PRK15128 23S rRNA m(5)C1962 me 97.3 0.00068 1.5E-08 71.9 7.9 82 354-441 220-303 (396)
20 PHA03412 putative methyltransf 97.2 0.00052 1.1E-08 68.6 6.0 122 300-445 5-128 (241)
21 PF13847 Methyltransf_31: Meth 97.2 0.00089 1.9E-08 60.3 6.8 84 354-445 3-87 (152)
22 PRK10909 rsmD 16S rRNA m(2)G96 97.2 0.0012 2.5E-08 63.9 7.9 77 354-440 53-130 (199)
23 PRK03522 rumB 23S rRNA methylu 97.1 0.0014 2.9E-08 66.9 7.2 81 355-445 174-254 (315)
24 PF05175 MTS: Methyltransferas 97.0 0.0023 4.9E-08 59.5 7.8 77 354-440 31-107 (170)
25 TIGR02085 meth_trns_rumB 23S r 97.0 0.0012 2.7E-08 69.0 6.6 76 355-440 234-309 (374)
26 TIGR01177 conserved hypothetic 97.0 0.0038 8.3E-08 63.9 10.0 82 353-445 181-262 (329)
27 TIGR00446 nop2p NOL1/NOP2/sun 97.0 0.0019 4.1E-08 64.4 7.0 85 354-446 71-155 (264)
28 PHA03411 putative methyltransf 96.8 0.0028 6E-08 64.7 6.6 93 333-445 46-140 (279)
29 TIGR00479 rumA 23S rRNA (uraci 96.7 0.0048 1E-07 65.3 8.4 83 354-443 292-374 (431)
30 PRK14904 16S rRNA methyltransf 96.7 0.0036 7.7E-08 66.9 7.5 84 354-447 250-334 (445)
31 PRK09328 N5-glutamine S-adenos 96.7 0.0066 1.4E-07 59.4 8.4 83 354-446 108-190 (275)
32 PRK05031 tRNA (uracil-5-)-meth 96.7 0.0038 8.2E-08 65.2 6.9 79 356-441 208-298 (362)
33 smart00650 rADc Ribosomal RNA 96.7 0.0049 1.1E-07 56.8 6.9 76 354-442 13-88 (169)
34 TIGR00537 hemK_rel_arch HemK-r 96.6 0.0077 1.7E-07 55.9 8.1 77 355-445 20-96 (179)
35 COG0742 N6-adenine-specific me 96.6 0.0068 1.5E-07 58.7 7.7 100 324-442 24-125 (187)
36 PRK10901 16S rRNA methyltransf 96.6 0.0061 1.3E-07 64.8 7.7 84 354-445 244-327 (427)
37 PRK13168 rumA 23S rRNA m(5)U19 96.5 0.0074 1.6E-07 64.4 8.0 85 354-445 297-381 (443)
38 PRK11783 rlmL 23S rRNA m(2)G24 96.5 0.0069 1.5E-07 68.5 8.1 82 354-444 538-621 (702)
39 PRK14902 16S rRNA methyltransf 96.5 0.007 1.5E-07 64.6 7.7 85 354-446 250-335 (444)
40 smart00165 UBA Ubiquitin assoc 96.4 0.0045 9.7E-08 43.9 3.8 34 2-37 3-36 (37)
41 COG2263 Predicted RNA methylas 96.4 0.01 2.2E-07 57.8 7.4 73 354-440 45-117 (198)
42 PRK14901 16S rRNA methyltransf 96.3 0.0094 2E-07 63.5 7.6 89 354-446 252-340 (434)
43 PRK14967 putative methyltransf 96.3 0.0086 1.9E-07 57.8 6.5 77 354-442 36-112 (223)
44 cd02440 AdoMet_MTases S-adenos 96.3 0.011 2.4E-07 46.3 6.0 79 357-444 1-79 (107)
45 TIGR03534 RF_mod_PrmC protein- 96.3 0.0099 2.2E-07 57.1 6.9 82 354-445 87-168 (251)
46 COG2265 TrmA SAM-dependent met 96.3 0.0059 1.3E-07 65.7 5.7 79 354-440 293-371 (432)
47 PF05958 tRNA_U5-meth_tr: tRNA 96.2 0.0068 1.5E-07 63.2 5.5 81 357-440 199-287 (352)
48 PRK14903 16S rRNA methyltransf 96.1 0.014 3.1E-07 62.4 7.7 86 354-447 237-323 (431)
49 PRK11805 N5-glutamine S-adenos 96.1 0.018 3.8E-07 59.1 8.0 80 356-445 135-215 (307)
50 TIGR03533 L3_gln_methyl protei 96.0 0.019 4.2E-07 58.0 7.7 81 355-445 122-203 (284)
51 TIGR02143 trmA_only tRNA (urac 96.0 0.011 2.3E-07 61.7 5.5 83 356-441 199-289 (353)
52 PRK04338 N(2),N(2)-dimethylgua 95.9 0.015 3.3E-07 61.5 6.4 76 355-440 58-134 (382)
53 PF00627 UBA: UBA/TS-N domain; 95.9 0.011 2.4E-07 42.4 3.6 26 2-27 4-29 (37)
54 cd00194 UBA Ubiquitin Associat 95.8 0.014 3.1E-07 41.4 3.9 35 2-38 3-37 (38)
55 KOG0919 C-5 cytosine-specific 95.7 0.0082 1.8E-07 60.7 3.4 51 298-348 286-336 (338)
56 PF10672 Methyltrans_SAM: S-ad 95.7 0.038 8.3E-07 56.6 8.3 83 354-445 123-207 (286)
57 TIGR02987 met_A_Alw26 type II 95.7 0.012 2.6E-07 64.0 4.7 88 354-445 31-126 (524)
58 PRK14896 ksgA 16S ribosomal RN 95.7 0.023 4.9E-07 56.4 6.2 74 354-442 29-102 (258)
59 COG1092 Predicted SAM-dependen 95.6 0.059 1.3E-06 57.6 9.3 106 355-486 218-325 (393)
60 TIGR02752 MenG_heptapren 2-hep 95.5 0.048 1E-06 52.1 7.7 82 354-444 45-127 (231)
61 TIGR00536 hemK_fam HemK family 95.4 0.035 7.7E-07 55.8 6.8 80 356-445 116-196 (284)
62 PRK14968 putative methyltransf 95.4 0.06 1.3E-06 49.2 7.5 78 354-443 23-102 (188)
63 PRK00274 ksgA 16S ribosomal RN 95.3 0.054 1.2E-06 54.3 7.6 73 354-440 42-114 (272)
64 PF12847 Methyltransf_18: Meth 95.3 0.061 1.3E-06 45.1 6.8 74 355-439 2-78 (112)
65 TIGR00563 rsmB ribosomal RNA s 95.3 0.052 1.1E-06 57.7 7.8 85 354-447 238-325 (426)
66 COG4123 Predicted O-methyltran 95.2 0.032 6.9E-07 56.3 5.5 101 333-443 26-127 (248)
67 TIGR00755 ksgA dimethyladenosi 95.1 0.044 9.4E-07 54.1 6.2 75 354-440 29-103 (253)
68 TIGR00080 pimt protein-L-isoas 95.1 0.079 1.7E-06 50.9 7.7 83 354-444 77-159 (215)
69 PRK09489 rsmC 16S ribosomal RN 95.0 0.061 1.3E-06 56.2 7.3 98 330-441 170-271 (342)
70 TIGR00138 gidB 16S rRNA methyl 95.0 0.058 1.2E-06 51.1 6.4 75 355-439 43-117 (181)
71 TIGR02469 CbiT precorrin-6Y C5 95.0 0.092 2E-06 44.4 7.0 76 354-437 19-94 (124)
72 TIGR02021 BchM-ChlM magnesium 94.9 0.086 1.9E-06 50.4 7.5 43 354-399 55-97 (219)
73 TIGR00308 TRM1 tRNA(guanine-26 94.9 0.044 9.6E-07 58.0 5.8 44 355-400 45-90 (374)
74 COG2890 HemK Methylase of poly 94.8 0.043 9.4E-07 55.7 5.4 78 357-445 113-190 (280)
75 PF02384 N6_Mtase: N-6 DNA Met 94.7 0.028 6E-07 56.6 3.7 108 330-444 23-138 (311)
76 KOG3420 Predicted RNA methylas 94.6 0.053 1.1E-06 51.5 4.9 76 354-440 48-123 (185)
77 TIGR00406 prmA ribosomal prote 94.6 0.082 1.8E-06 53.4 6.6 46 353-400 158-203 (288)
78 PF01170 UPF0020: Putative RNA 94.5 0.072 1.6E-06 50.4 5.7 80 354-441 28-116 (179)
79 PRK14966 unknown domain/N5-glu 94.3 0.096 2.1E-06 56.5 6.7 78 354-440 251-328 (423)
80 PRK11207 tellurite resistance 94.2 0.17 3.6E-06 48.2 7.6 73 355-439 31-103 (197)
81 PRK07402 precorrin-6B methylas 94.1 0.19 4.1E-06 47.4 7.7 47 354-401 40-86 (196)
82 PRK08287 cobalt-precorrin-6Y C 94.1 0.17 3.8E-06 47.2 7.3 46 354-400 31-76 (187)
83 PTZ00338 dimethyladenosine tra 94.1 0.11 2.3E-06 53.3 6.3 98 330-442 12-112 (294)
84 PLN02396 hexaprenyldihydroxybe 94.1 0.11 2.4E-06 53.9 6.5 42 354-398 131-172 (322)
85 PRK00312 pcm protein-L-isoaspa 94.0 0.17 3.8E-06 48.1 7.2 80 354-444 78-157 (212)
86 KOG2730 Methylase [General fun 93.8 0.057 1.2E-06 54.1 3.6 104 337-447 77-181 (263)
87 KOG2904 Predicted methyltransf 93.8 0.11 2.4E-06 53.5 5.7 83 356-442 150-233 (328)
88 PLN02244 tocopherol O-methyltr 93.6 0.26 5.6E-06 51.0 8.1 74 353-437 117-192 (340)
89 PRK15001 SAM-dependent 23S rib 93.6 0.16 3.4E-06 54.0 6.6 75 356-441 230-308 (378)
90 PRK00517 prmA ribosomal protei 93.5 0.13 2.9E-06 50.6 5.6 51 348-400 113-163 (250)
91 PRK00377 cbiT cobalt-precorrin 93.5 0.23 4.9E-06 47.1 7.0 79 353-439 39-119 (198)
92 PRK00107 gidB 16S rRNA methylt 93.4 0.21 4.6E-06 47.9 6.6 79 350-438 41-119 (187)
93 PRK01544 bifunctional N5-gluta 93.3 0.19 4.2E-06 55.0 7.0 79 355-445 139-220 (506)
94 PRK07580 Mg-protoporphyrin IX 93.3 0.3 6.5E-06 46.4 7.5 45 353-400 62-106 (230)
95 PRK00121 trmB tRNA (guanine-N( 93.2 0.27 5.8E-06 47.1 7.0 82 354-442 40-122 (202)
96 PRK11036 putative S-adenosyl-L 93.1 0.24 5.2E-06 48.7 6.7 78 353-440 43-121 (255)
97 PLN02585 magnesium protoporphy 93.0 0.26 5.5E-06 51.1 6.9 42 354-398 144-185 (315)
98 COG2264 PrmA Ribosomal protein 92.6 0.26 5.5E-06 51.1 6.2 57 342-400 150-206 (300)
99 COG2227 UbiG 2-polyprenyl-3-me 92.5 0.28 6.1E-06 49.4 6.3 72 354-437 59-130 (243)
100 TIGR03840 TMPT_Se_Te thiopurin 92.4 0.34 7.4E-06 47.2 6.6 40 353-395 33-72 (213)
101 PF13649 Methyltransf_25: Meth 92.2 0.41 8.8E-06 40.1 6.0 70 358-437 1-73 (101)
102 TIGR00091 tRNA (guanine-N(7)-) 91.9 0.5 1.1E-05 44.8 6.9 83 354-442 16-98 (194)
103 PRK05134 bifunctional 3-demeth 91.8 0.79 1.7E-05 44.0 8.3 43 354-399 48-90 (233)
104 PF00398 RrnaAD: Ribosomal RNA 91.7 0.26 5.7E-06 49.0 5.1 77 354-440 30-106 (262)
105 PRK13942 protein-L-isoaspartat 91.7 0.54 1.2E-05 45.4 7.1 77 353-438 75-152 (212)
106 TIGR00477 tehB tellurite resis 91.7 0.59 1.3E-05 44.4 7.2 75 355-442 31-105 (195)
107 KOG1227 Putative methyltransfe 91.6 0.17 3.8E-06 52.7 3.7 62 336-400 177-239 (351)
108 TIGR00478 tly hemolysin TlyA f 91.6 0.37 7.9E-06 47.9 5.9 75 354-438 75-150 (228)
109 PRK12335 tellurite resistance 91.5 0.53 1.1E-05 47.4 7.0 43 356-401 122-164 (287)
110 PRK13944 protein-L-isoaspartat 91.4 0.71 1.5E-05 44.2 7.5 82 354-444 72-155 (205)
111 PRK05785 hypothetical protein; 91.3 0.52 1.1E-05 46.1 6.5 70 354-442 51-121 (226)
112 PRK11933 yebU rRNA (cytosine-C 91.2 0.54 1.2E-05 51.4 7.2 86 354-447 113-199 (470)
113 PRK13255 thiopurine S-methyltr 91.2 0.56 1.2E-05 45.9 6.6 40 353-395 36-75 (218)
114 PRK11188 rrmJ 23S rRNA methylt 91.0 0.52 1.1E-05 45.6 6.2 74 353-438 50-124 (209)
115 PF06325 PrmA: Ribosomal prote 90.8 0.41 8.8E-06 49.4 5.5 53 346-400 153-205 (295)
116 PRK10258 biotin biosynthesis p 90.8 0.58 1.3E-05 45.6 6.3 81 342-440 32-112 (251)
117 TIGR02072 BioC biotin biosynth 90.7 0.37 8E-06 45.3 4.8 78 354-444 34-111 (240)
118 PF01555 N6_N4_Mtase: DNA meth 90.7 0.31 6.7E-06 45.4 4.2 40 353-395 190-229 (231)
119 PTZ00098 phosphoethanolamine N 90.7 0.88 1.9E-05 45.4 7.6 72 305-398 22-94 (263)
120 TIGR01934 MenG_MenH_UbiE ubiqu 90.3 0.82 1.8E-05 42.7 6.7 74 354-437 39-112 (223)
121 PLN02233 ubiquinone biosynthes 90.2 1 2.2E-05 44.9 7.7 77 354-439 73-153 (261)
122 COG0116 Predicted N6-adenine-s 90.1 1.4 3.1E-05 47.1 9.0 77 381-483 256-333 (381)
123 TIGR01983 UbiG ubiquinone bios 89.9 0.83 1.8E-05 43.3 6.4 43 354-399 45-87 (224)
124 PRK10742 putative methyltransf 89.7 1.2 2.7E-05 45.1 7.7 84 356-442 90-175 (250)
125 PF01189 Nol1_Nop2_Fmu: NOL1/N 89.6 0.94 2E-05 46.1 6.9 88 354-447 85-172 (283)
126 PLN02781 Probable caffeoyl-CoA 89.5 1.1 2.5E-05 44.1 7.2 92 342-439 57-152 (234)
127 PRK00216 ubiE ubiquinone/menaq 89.5 1.1 2.4E-05 42.3 6.9 76 354-437 51-127 (239)
128 PRK14103 trans-aconitate 2-met 89.4 0.8 1.7E-05 44.9 6.1 74 354-444 29-102 (255)
129 PRK01683 trans-aconitate 2-met 89.3 0.89 1.9E-05 44.4 6.4 75 353-442 30-104 (258)
130 PRK13943 protein-L-isoaspartat 89.3 0.91 2E-05 47.3 6.7 77 354-438 80-156 (322)
131 PF02005 TRM: N2,N2-dimethylgu 89.3 0.43 9.4E-06 50.7 4.4 62 336-400 32-95 (377)
132 PLN02672 methionine S-methyltr 89.0 0.7 1.5E-05 55.3 6.2 46 355-401 119-164 (1082)
133 COG2226 UbiE Methylase involve 89.0 1.2 2.7E-05 44.7 7.1 83 354-445 51-133 (238)
134 PRK11783 rlmL 23S rRNA m(2)G24 88.7 0.87 1.9E-05 51.9 6.5 54 381-440 258-312 (702)
135 COG1041 Predicted DNA modifica 88.5 0.77 1.7E-05 48.6 5.5 77 354-441 197-274 (347)
136 PRK00811 spermidine synthase; 88.5 1 2.2E-05 45.7 6.2 78 353-439 75-158 (283)
137 PRK11727 23S rRNA mA1618 methy 88.2 1.6 3.5E-05 45.5 7.7 81 354-441 114-199 (321)
138 PRK08317 hypothetical protein; 87.9 1.8 3.9E-05 40.5 7.1 45 354-398 19-63 (241)
139 PF01209 Ubie_methyltran: ubiE 87.7 1.3 2.8E-05 43.9 6.3 77 354-439 47-124 (233)
140 PF02086 MethyltransfD12: D12 87.2 0.37 8.1E-06 46.7 2.1 52 345-399 9-62 (260)
141 PRK06202 hypothetical protein; 87.1 1.9 4.2E-05 41.6 7.0 77 353-441 59-139 (232)
142 PF03848 TehB: Tellurite resis 87.0 2.1 4.6E-05 41.7 7.1 42 355-399 31-72 (192)
143 PF07499 RuvA_C: RuvA, C-termi 86.7 0.98 2.1E-05 34.2 3.8 33 4-36 7-41 (47)
144 TIGR00438 rrmJ cell division p 86.5 1.7 3.7E-05 40.7 6.1 74 353-439 31-106 (188)
145 PRK11873 arsM arsenite S-adeno 85.9 2 4.3E-05 42.4 6.6 77 353-438 76-153 (272)
146 TIGR02081 metW methionine bios 85.9 1.2 2.5E-05 42.0 4.7 81 347-444 6-88 (194)
147 PRK04148 hypothetical protein; 85.9 2.5 5.5E-05 39.1 6.7 68 355-439 17-85 (134)
148 PLN02336 phosphoethanolamine N 85.7 0.96 2.1E-05 48.4 4.5 80 355-445 38-117 (475)
149 PF01728 FtsJ: FtsJ-like methy 85.3 1.1 2.3E-05 41.7 4.0 81 354-445 23-107 (181)
150 COG0144 Sun tRNA and rRNA cyto 85.2 2.7 5.9E-05 44.2 7.5 90 354-448 156-246 (355)
151 PF01135 PCMT: Protein-L-isoas 84.9 1.5 3.2E-05 43.0 5.0 96 338-444 58-154 (209)
152 TIGR03587 Pse_Me-ase pseudamin 84.6 2.1 4.6E-05 41.3 5.9 44 353-398 42-86 (204)
153 PF08241 Methyltransf_11: Meth 84.4 3.3 7.1E-05 32.9 6.0 67 359-439 1-68 (95)
154 PF07021 MetW: Methionine bios 84.1 2.1 4.6E-05 42.0 5.6 77 345-437 4-81 (193)
155 COG2813 RsmC 16S RNA G1207 met 83.9 3.5 7.6E-05 43.0 7.4 73 357-440 161-233 (300)
156 TIGR00417 speE spermidine synt 83.7 3.3 7.2E-05 41.4 7.1 47 354-401 72-118 (270)
157 PRK06922 hypothetical protein; 83.5 2.1 4.7E-05 48.9 6.1 86 348-442 413-498 (677)
158 COG0030 KsgA Dimethyladenosine 82.7 2.9 6.4E-05 42.6 6.2 76 355-442 31-106 (259)
159 PRK13256 thiopurine S-methyltr 82.2 2.8 6E-05 41.8 5.7 41 353-396 42-82 (226)
160 PF13489 Methyltransf_23: Meth 81.8 2.3 5E-05 37.4 4.6 40 352-394 20-59 (161)
161 PRK15451 tRNA cmo(5)U34 methyl 81.7 3.8 8.3E-05 40.3 6.5 66 352-417 54-121 (247)
162 PF05185 PRMT5: PRMT5 arginine 80.5 3.8 8.1E-05 44.7 6.5 72 355-436 187-263 (448)
163 COG2521 Predicted archaeal met 80.2 1 2.2E-05 45.9 1.9 99 354-482 134-237 (287)
164 PRK11524 putative methyltransf 80.1 2.2 4.8E-05 43.1 4.3 42 353-397 207-248 (284)
165 KOG1270 Methyltransferases [Co 80.1 3.1 6.7E-05 42.9 5.3 41 355-398 90-130 (282)
166 PF03291 Pox_MCEL: mRNA cappin 79.9 3.1 6.8E-05 43.5 5.5 42 354-397 62-103 (331)
167 PF05724 TPMT: Thiopurine S-me 79.3 2.4 5.3E-05 41.6 4.2 74 354-437 37-122 (218)
168 PRK15068 tRNA mo(5)U34 methylt 78.9 5.7 0.00012 41.1 6.9 37 354-392 122-158 (322)
169 PRK13699 putative methylase; P 78.8 3.4 7.3E-05 40.8 5.1 42 353-397 162-203 (227)
170 PRK04266 fibrillarin; Provisio 78.8 6.7 0.00014 38.8 7.1 77 353-438 71-148 (226)
171 COG3963 Phospholipid N-methylt 78.6 5.4 0.00012 39.0 6.1 85 352-446 46-132 (194)
172 PTZ00146 fibrillarin; Provisio 78.5 6.2 0.00013 41.0 7.0 80 352-439 130-210 (293)
173 PRK03612 spermidine synthase; 78.4 5 0.00011 44.3 6.7 81 353-441 296-383 (521)
174 PRK14121 tRNA (guanine-N(7)-)- 77.8 8.1 0.00018 41.6 7.9 82 354-442 122-203 (390)
175 PRK11088 rrmA 23S rRNA methylt 77.0 5.4 0.00012 39.7 6.0 70 355-437 86-157 (272)
176 COG2242 CobL Precorrin-6B meth 76.7 10 0.00022 37.1 7.5 84 345-439 27-111 (187)
177 TIGR00740 methyltransferase, p 75.7 9.7 0.00021 36.9 7.2 82 353-444 52-135 (239)
178 cd04708 BAH_plantDCM_II BAH, o 75.3 1.1 2.4E-05 44.2 0.5 15 354-368 188-202 (202)
179 smart00828 PKS_MT Methyltransf 74.4 9 0.0002 36.4 6.5 42 357-399 2-43 (224)
180 PLN02476 O-methyltransferase 74.3 11 0.00024 38.8 7.5 92 343-440 108-203 (278)
181 COG0293 FtsJ 23S rRNA methylas 73.8 6.5 0.00014 38.9 5.4 71 352-436 43-116 (205)
182 KOG1271 Methyltransferases [Ge 73.7 5.6 0.00012 39.4 4.9 81 356-445 69-150 (227)
183 COG3897 Predicted methyltransf 73.4 3.7 7.9E-05 40.9 3.6 79 354-446 79-157 (218)
184 PRK11705 cyclopropane fatty ac 72.0 9.2 0.0002 40.6 6.5 41 354-397 167-208 (383)
185 PRK00050 16S rRNA m(4)C1402 me 71.5 9.3 0.0002 39.6 6.2 78 355-438 20-97 (296)
186 TIGR00452 methyltransferase, p 70.0 18 0.00039 37.7 8.0 38 354-393 121-158 (314)
187 PLN02366 spermidine synthase 69.7 11 0.00025 39.0 6.4 80 353-439 90-173 (308)
188 TIGR01444 fkbM_fam methyltrans 68.5 12 0.00026 32.8 5.5 44 357-401 1-44 (143)
189 PF02353 CMAS: Mycolic acid cy 68.0 12 0.00026 38.1 6.1 45 352-399 60-105 (273)
190 PLN02336 phosphoethanolamine N 67.6 13 0.00029 39.8 6.6 42 353-397 265-307 (475)
191 PLN02490 MPBQ/MSBQ methyltrans 64.8 16 0.00035 38.5 6.5 72 354-438 113-185 (340)
192 KOG0820 Ribosomal RNA adenine 64.2 21 0.00045 37.4 6.9 84 349-445 53-137 (315)
193 PRK04457 spermidine synthase; 64.2 13 0.00028 37.4 5.4 76 354-437 66-142 (262)
194 PF10294 Methyltransf_16: Puta 63.8 23 0.00051 33.2 6.8 82 353-440 44-128 (173)
195 PF05401 NodS: Nodulation prot 62.8 14 0.00031 36.5 5.3 69 356-438 45-113 (201)
196 KOG2198 tRNA cytosine-5-methyl 61.8 23 0.00049 38.2 6.9 128 306-446 120-251 (375)
197 PLN03075 nicotianamine synthas 60.9 44 0.00095 34.8 8.7 77 354-438 123-202 (296)
198 COG2230 Cfa Cyclopropane fatty 58.8 24 0.00052 36.6 6.3 64 352-418 70-135 (283)
199 TIGR03438 probable methyltrans 58.6 26 0.00055 35.8 6.5 87 353-445 62-152 (301)
200 COG1867 TRM1 N2,N2-dimethylgua 58.4 22 0.00047 38.4 6.0 43 355-400 53-97 (380)
201 KOG2187 tRNA uracil-5-methyltr 56.9 5.8 0.00012 44.2 1.6 61 333-396 358-422 (534)
202 KOG4169 15-hydroxyprostaglandi 56.4 18 0.00039 36.9 4.8 73 362-439 14-91 (261)
203 KOG3191 Predicted N6-DNA-methy 55.3 25 0.00054 34.9 5.4 88 345-445 36-124 (209)
204 cd01968 Nitrogenase_NifE_I Nit 54.9 46 0.001 35.3 7.9 128 304-442 221-367 (410)
205 PRK11760 putative 23S rRNA C24 52.8 29 0.00064 37.1 5.9 39 352-393 209-247 (357)
206 KOG1663 O-methyltransferase [S 52.2 38 0.00083 34.4 6.3 96 355-485 76-175 (237)
207 PF09288 UBA_3: Fungal ubiquit 48.5 15 0.00033 29.4 2.3 25 4-28 13-37 (55)
208 TIGR01283 nifE nitrogenase mol 48.3 85 0.0018 34.0 8.8 131 304-445 260-409 (456)
209 PRK14478 nitrogenase molybdenu 45.4 1E+02 0.0022 33.7 8.9 128 304-442 254-404 (475)
210 PRK01581 speE spermidine synth 44.0 53 0.0011 35.4 6.2 80 353-440 149-235 (374)
211 KOG2078 tRNA modification enzy 43.6 20 0.00042 39.6 3.0 46 350-398 245-290 (495)
212 COG0863 DNA modification methy 43.2 35 0.00076 33.7 4.5 48 349-399 217-264 (302)
213 cd01976 Nitrogenase_MoFe_alpha 42.5 1.1E+02 0.0023 33.1 8.3 144 287-445 220-383 (421)
214 cd01971 Nitrogenase_VnfN_like 42.3 1.2E+02 0.0025 32.7 8.6 36 304-339 223-261 (427)
215 KOG1500 Protein arginine N-met 42.2 50 0.0011 35.7 5.6 54 338-394 160-215 (517)
216 KOG1975 mRNA cap methyltransfe 42.2 28 0.00061 37.3 3.8 113 316-440 79-205 (389)
217 PF05219 DREV: DREV methyltran 40.8 48 0.001 34.2 5.1 119 259-396 8-133 (265)
218 COG1189 Predicted rRNA methyla 40.2 43 0.00093 34.2 4.6 36 352-389 77-112 (245)
219 PF02390 Methyltransf_4: Putat 40.0 69 0.0015 30.9 5.9 84 357-446 20-103 (195)
220 cd01973 Nitrogenase_VFe_beta_l 38.7 1.2E+02 0.0026 33.1 8.1 135 304-445 242-395 (454)
221 KOG1099 SAM-dependent methyltr 37.9 48 0.001 34.2 4.5 93 328-440 22-125 (294)
222 cd01965 Nitrogenase_MoFe_beta_ 37.2 75 0.0016 34.0 6.2 129 304-439 237-379 (428)
223 COG0421 SpeE Spermidine syntha 37.2 43 0.00092 34.6 4.2 91 336-437 60-155 (282)
224 KOG1122 tRNA and rRNA cytosine 36.1 1E+02 0.0022 34.2 6.8 84 354-447 241-328 (460)
225 TIGR01285 nifN nitrogenase mol 34.4 1E+02 0.0022 33.4 6.7 138 288-445 236-387 (432)
226 KOG2361 Predicted methyltransf 34.0 43 0.00093 34.5 3.5 77 357-439 74-152 (264)
227 cd01977 Nitrogenase_VFe_alpha 33.5 1.4E+02 0.0031 31.8 7.6 36 304-339 225-261 (415)
228 COG3243 PhaC Poly(3-hydroxyalk 33.3 11 0.00024 41.2 -0.8 75 160-242 331-412 (445)
229 PF08704 GCD14: tRNA methyltra 33.1 91 0.002 31.6 5.7 63 353-416 39-103 (247)
230 PF08242 Methyltransf_12: Meth 32.9 10 0.00022 31.2 -0.9 34 359-393 1-34 (99)
231 PLN02823 spermine synthase 32.9 1.2E+02 0.0025 32.1 6.7 78 354-439 103-184 (336)
232 PTZ00357 methyltransferase; Pr 31.2 72 0.0016 37.6 5.0 75 370-445 720-810 (1072)
233 PF04695 Pex14_N: Peroxisomal 30.6 45 0.00098 30.6 2.8 28 2-29 25-52 (136)
234 cd01974 Nitrogenase_MoFe_beta 29.5 3.2E+02 0.0069 29.5 9.4 132 304-441 241-387 (435)
235 PF10440 WIYLD: Ubiquitin-bind 29.4 49 0.0011 27.4 2.5 37 5-41 16-62 (65)
236 PF05971 Methyltransf_10: Prot 28.9 1.2E+02 0.0026 31.7 5.9 86 352-442 100-188 (299)
237 TIGR00601 rad23 UV excision re 28.5 39 0.00084 36.4 2.3 22 4-25 160-181 (378)
238 COG1743 Adenine-specific DNA m 28.0 74 0.0016 37.6 4.5 91 349-445 86-188 (875)
239 cd01967 Nitrogenase_MoFe_alpha 27.9 2E+02 0.0043 30.3 7.4 131 304-445 223-369 (406)
240 KOG1499 Protein arginine N-met 27.7 75 0.0016 34.0 4.2 38 354-393 60-97 (346)
241 TIGR01284 alt_nitrog_alph nitr 26.6 2.4E+02 0.0052 30.8 8.0 187 244-445 200-409 (457)
242 PRK10904 DNA adenine methylase 26.5 37 0.0008 34.3 1.7 49 344-397 17-65 (271)
243 COG5207 UBP14 Isopeptidase T [ 26.0 56 0.0012 36.9 3.0 24 4-27 562-585 (749)
244 TIGR00571 dam DNA adenine meth 26.0 39 0.00084 34.0 1.7 47 346-397 16-63 (266)
245 PF14872 GHL5: Hypothetical gl 25.8 44 0.00096 38.7 2.2 28 158-185 423-450 (811)
246 PF13373 DUF2407_C: DUF2407 C- 25.2 44 0.00096 31.2 1.8 13 6-18 5-17 (140)
247 TIGR02685 pter_reduc_Leis pter 24.8 2.3E+02 0.005 27.4 6.8 31 409-439 56-92 (267)
248 PF02031 Peptidase_M7: Strepto 24.8 18 0.0004 33.6 -0.8 18 302-319 80-97 (132)
249 PF02527 GidB: rRNA small subu 24.1 2.7E+02 0.0058 26.9 6.9 69 357-437 51-121 (184)
250 TIGR01282 nifD nitrogenase mol 23.6 3.5E+02 0.0076 29.7 8.5 144 287-445 255-418 (466)
251 PF13679 Methyltransf_32: Meth 23.3 2.3E+02 0.005 25.4 6.0 83 353-445 24-113 (141)
252 PF11372 DUF3173: Domain of un 22.9 72 0.0016 25.9 2.3 19 5-23 7-25 (59)
253 PF08587 UBA_2: Ubiquitin asso 22.7 22 0.00048 27.6 -0.6 16 8-23 11-26 (46)
254 PF01564 Spermine_synth: Sperm 22.4 1.5E+02 0.0033 29.6 5.1 79 353-440 75-159 (246)
255 PF01596 Methyltransf_3: O-met 22.0 2.8E+02 0.0061 27.1 6.7 77 355-436 46-126 (205)
256 KOG1205 Predicted dehydrogenas 22.0 1.5E+02 0.0031 30.9 4.9 30 407-436 65-96 (282)
257 COG4076 Predicted RNA methylas 21.8 1.2E+02 0.0026 30.6 4.0 37 357-397 35-72 (252)
258 TIGR01839 PHA_synth_II poly(R) 21.7 33 0.00072 38.8 0.3 37 199-242 488-525 (560)
259 PRK14476 nitrogenase molybdenu 21.5 2E+02 0.0043 31.5 6.1 137 287-445 235-385 (455)
260 TIGR01838 PHA_synth_I poly(R)- 21.3 34 0.00074 38.3 0.3 43 193-242 451-499 (532)
261 COG4221 Short-chain alcohol de 21.1 2E+02 0.0043 29.5 5.6 68 363-436 16-86 (246)
262 COG2519 GCD14 tRNA(1-methylade 21.1 2.1E+02 0.0046 29.5 5.8 63 354-417 94-158 (256)
263 PHA01634 hypothetical protein 21.0 2.6E+02 0.0056 26.7 5.8 42 354-397 28-69 (156)
264 PRK14477 bifunctional nitrogen 20.3 3.6E+02 0.0078 32.3 8.3 130 304-445 247-403 (917)
265 PF08003 Methyltransf_9: Prote 20.3 3.3E+02 0.0072 28.9 7.1 46 341-393 107-152 (315)
No 1
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=99.92 E-value=2.4e-25 Score=217.86 Aligned_cols=105 Identities=22% Similarity=0.396 Sum_probs=87.3
Q ss_pred CcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEE
Q 011347 356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV 435 (488)
Q Consensus 356 itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLV 435 (488)
||||||||||||+++||+++|| ++++++|+|+.|+++|+.+|. .+..+||++++.+.|+. ++|||
T Consensus 1 ~~~~dlFsG~Gg~~~g~~~ag~--~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~------~~D~l 65 (335)
T PF00145_consen 1 MKVIDLFSGIGGFSLGLEQAGF--EVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPK------DVDLL 65 (335)
T ss_dssp EEEEEET-TTTHHHHHHHHTTE--EEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHH------T-SEE
T ss_pred CcEEEEccCccHHHHHHHhcCc--EEEEEeecCHHHHHhhhhccc-------ccccccccccccccccc------cceEE
Confidence 5899999999999999999995 679999999999999998764 36789999999886642 59999
Q ss_pred EecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 011347 436 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 487 (488)
Q Consensus 436 IGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~~ 487 (488)
+||||||+||.+|+ +.|++|+|+.||++|+|+|++++|+.
T Consensus 66 ~ggpPCQ~fS~ag~------------~~~~~d~r~~L~~~~~~~v~~~~Pk~ 105 (335)
T PF00145_consen 66 IGGPPCQGFSIAGK------------RKGFDDPRNSLFFEFLRIVKELKPKY 105 (335)
T ss_dssp EEE---TTTSTTST------------HHCCCCHTTSHHHHHHHHHHHHS-SE
T ss_pred EeccCCceEecccc------------ccccccccchhhHHHHHHHhhccceE
Confidence 99999999998864 24688999999999999999999874
No 2
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.91 E-value=4.9e-25 Score=223.76 Aligned_cols=109 Identities=19% Similarity=0.341 Sum_probs=94.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
..+++|||||||||+++||+++|| ++++++|||+.|+++|+.++ +...++..||.+++.+.+... ++|
T Consensus 2 ~~~~~idLFsG~GG~~lGf~~agf--~~~~a~Eid~~a~~ty~~n~-----~~~~~~~~di~~~~~~~~~~~-----~~D 69 (328)
T COG0270 2 EKMKVIDLFAGIGGLSLGFEEAGF--EIVFANEIDPPAVATYKANF-----PHGDIILGDIKELDGEALRKS-----DVD 69 (328)
T ss_pred CCceEEeeccCCchHHHHHHhcCC--eEEEEEecCHHHHHHHHHhC-----CCCceeechHhhcChhhcccc-----CCC
Confidence 468999999999999999999996 57999999999999998754 324467799999998877532 799
Q ss_pred EEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 011347 434 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 486 (488)
Q Consensus 434 LVIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~ 486 (488)
+|+||||||+||.||+ +.|++|+|++||++|+|+|+.++|.
T Consensus 70 vligGpPCQ~FS~aG~------------r~~~~D~R~~L~~~~~r~I~~~~P~ 110 (328)
T COG0270 70 VLIGGPPCQDFSIAGK------------RRGYDDPRGSLFLEFIRLIEQLRPK 110 (328)
T ss_pred EEEeCCCCcchhhcCc------------ccCCcCccceeeHHHHHHHHhhCCC
Confidence 9999999999998865 3578999999999999999999985
No 3
>PRK10458 DNA cytosine methylase; Provisional
Probab=99.89 E-value=3.9e-23 Score=219.76 Aligned_cols=126 Identities=17% Similarity=0.275 Sum_probs=97.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHH--------Hh
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE--------SL 425 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie--------~l 425 (488)
.++++|||||||||+++||+++|+ ++|+++|+|+.|++||+.+|.. .+...+..+||++++...+. ..
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe~aG~--~~v~a~Eid~~A~~TY~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~ 162 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFEAIGG--QCVFTSEWNKHAVRTYKANWYC--DPATHRFNEDIRDITLSHKEGVSDEEAAEH 162 (467)
T ss_pred CCceEEEeCcCccHHHHHHHHcCC--EEEEEEechHHHHHHHHHHcCC--CCccceeccChhhCccccccccchhhhhhh
Confidence 368999999999999999999998 5799999999999999987632 22344567899999854321 11
Q ss_pred h-hccCCccEEEecCCCCCccccCCCCCCCCccccccCCCCC-CCCcchHHHHHHHHHHhhccc
Q 011347 426 I-HKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLP-DFDFSLYYEFVRVVQRVRSMK 487 (488)
Q Consensus 426 ~-~~~g~~DLVIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~-D~Rs~LF~EfvRIV~~vr~~~ 487 (488)
+ ...+++|||+||||||+||.+|+.+.. -.|.+.|++ |+|++||++|+|+|++++|.+
T Consensus 163 ~~~~~p~~DvL~gGpPCQ~FS~AG~~k~~----~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk~ 222 (467)
T PRK10458 163 IRQHIPDHDVLLAGFPCQPFSLAGVSKKN----SLGRAHGFECETQGTLFFDVARIIDAKRPAI 222 (467)
T ss_pred hhccCCCCCEEEEcCCCCccchhcccccc----cccccccccCCccccHHHHHHHHHHHhCCCE
Confidence 1 134689999999999999998763221 012334665 799999999999999999875
No 4
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=99.87 E-value=8.9e-23 Score=202.73 Aligned_cols=106 Identities=19% Similarity=0.369 Sum_probs=91.6
Q ss_pred CcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEE
Q 011347 356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV 435 (488)
Q Consensus 356 itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLV 435 (488)
++|+||||||||+++||+++|+ ++++++|+|+.|+++|+.+|. .. ++.+||++++..++ .+++|+|
T Consensus 1 ~~v~dLFsG~Gg~~~gl~~~G~--~~v~a~e~~~~a~~~~~~N~~-----~~-~~~~Di~~~~~~~~------~~~~D~l 66 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKAGF--EIVAANEIDKSAAETYEANFP-----NK-LIEGDITKIDEKDF------IPDIDLL 66 (275)
T ss_pred CcEEEEccCcchHHHHHHHcCC--EEEEEEeCCHHHHHHHHHhCC-----CC-CccCccccCchhhc------CCCCCEE
Confidence 5799999999999999999997 569999999999999988653 22 56799999987653 3689999
Q ss_pred EecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 011347 436 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 487 (488)
Q Consensus 436 IGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~~ 487 (488)
+||||||+||.+|+ +.|.+|+|+.||++|+|+|++++|.+
T Consensus 67 ~~gpPCq~fS~ag~------------~~~~~d~r~~L~~~~~~~i~~~~P~~ 106 (275)
T cd00315 67 TGGFPCQPFSIAGK------------RKGFEDTRGTLFFEIIRILKEKKPKY 106 (275)
T ss_pred EeCCCChhhhHHhh------------cCCCCCchHHHHHHHHHHHHhcCCCE
Confidence 99999999999865 24678999999999999999999864
No 5
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.87 E-value=1.3e-22 Score=205.17 Aligned_cols=103 Identities=17% Similarity=0.361 Sum_probs=88.7
Q ss_pred ccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEEEe
Q 011347 358 MLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVIC 437 (488)
Q Consensus 358 VLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIG 437 (488)
||||||||||+++||+++||+ +++++|+|+.|+++|+.++ ++ .++.+||++++.+++ +++|||+|
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~--~~~a~e~~~~a~~ty~~N~-----~~-~~~~~Di~~~~~~~~-------~~~dvl~g 65 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFK--CVFASEIDKYAQKTYEANF-----GN-KVPFGDITKISPSDI-------PDFDILLG 65 (315)
T ss_pred CEEEecCccHHHHHHHHcCCe--EEEEEeCCHHHHHHHHHhC-----CC-CCCccChhhhhhhhC-------CCcCEEEe
Confidence 689999999999999999974 6899999999999998754 23 345689999986543 47999999
Q ss_pred cCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 011347 438 QNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 487 (488)
Q Consensus 438 GpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~~ 487 (488)
|||||+||.+|+ +.|++|+|+.||++|+|+|++++|.+
T Consensus 66 g~PCq~fS~ag~------------~~~~~d~r~~L~~~~~r~i~~~~P~~ 103 (315)
T TIGR00675 66 GFPCQPFSIAGK------------RKGFEDTRGTLFFEIVRILKEKKPKF 103 (315)
T ss_pred cCCCcccchhcc------------cCCCCCchhhHHHHHHHHHhhcCCCE
Confidence 999999998764 34678999999999999999999864
No 6
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=99.30 E-value=3e-12 Score=126.72 Aligned_cols=111 Identities=18% Similarity=0.320 Sum_probs=95.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
..++|++|+||+||+.++|+.+.|+-.+|+|+|++..|.++|+. |..+.++...||+.|+.+++..+ ++|
T Consensus 2 ~pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~-----N~h~~L~k~~~I~~lt~kefd~l-----~~~ 71 (338)
T KOG0919|consen 2 MPLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAH-----NYHSNLVKTRNIQSLTVKEFDKL-----QAN 71 (338)
T ss_pred CceehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhc-----CcccchhhccccceeeHhhhhhc-----ccc
Confidence 35899999999999999999999999999999999999999965 44456677789999999888765 689
Q ss_pred EEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 011347 434 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 486 (488)
Q Consensus 434 LVIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~ 486 (488)
++.-.||||+|...|. +..+.|+|+..|.+.+.+|-+++..
T Consensus 72 m~lMSPpCQPfTRiG~------------q~D~~D~Rs~aflhil~~lP~~q~L 112 (338)
T KOG0919|consen 72 MLLMSPPCQPFTRIGL------------QRDTEDKRSDAFLHILGLLPECQEL 112 (338)
T ss_pred eEeeCCCCCchhhhcc------------cccccCchhHHHHHHHhhhhhhhhh
Confidence 9999999999995432 3348999999999999999887653
No 7
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=99.29 E-value=3.5e-12 Score=127.17 Aligned_cols=157 Identities=13% Similarity=0.168 Sum_probs=110.2
Q ss_pred CCCCccccccccccch----hhHHHHhhhh----ccCCceeeecccc-Cccccccccc-c---cCCCCCCC--CCCCCCC
Q 011347 159 AQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL-H---NLPTTNRF--HIPPEPP 223 (488)
Q Consensus 159 ~~ppfF~fENV~~~~~----~~w~~Is~fL----~~i~Pe~Vds~~f-sAa~R~RgY~-h---NLP~~nR~--~~~p~~p 223 (488)
.+|.+|++|||..+-. ..+..|.+.| |.+++.++||..| .||+|+|.|+ . .++...-. |-.+.+.
T Consensus 102 ~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~~l~a~~~GvPQ~R~R~~~ia~~~~~~~~~~~~~p~~~~~~ 181 (275)
T cd00315 102 KKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWKLLNASDYGVPQNRERVFIIGIRKDLILNFFSPFPKPSEKK 181 (275)
T ss_pred cCCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEEEEEHHHcCCCCCCcEEEEEEEeCCCCccccccCCCCCCCC
Confidence 4899999999998865 4566676666 6789999999999 7889999995 2 22222111 1112346
Q ss_pred CcccccccCCCccCCCcCCCcccceeeccCCchhHHHHHHHHHHhhccCCCchhhhHHHHHhhcccceeeecccccCCCC
Q 011347 224 MTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVD 303 (488)
Q Consensus 224 ~tiqd~lp~~~~~wp~wd~r~kl~ci~t~~~~~~~l~~~i~~~~~~~~~~~~~~~q~~vl~~c~k~nlvW~g~~~~~ple 303 (488)
.|+.|+| ++..|+. -..|+++.... ... .+... ..-+|..+...+.|+
T Consensus 182 ~t~~d~l-----~~~~~~~--~~~ti~~~~~~---~~~----------~~~~~------------~~~~~~~~~~~R~lT 229 (275)
T cd00315 182 KTLKDIL-----RIRDPDE--PSPTLTASYGK---GTG----------SVHPT------------APDMIGKESNIRRLT 229 (275)
T ss_pred CcHHHHH-----hhhcCCC--CccceecCCCC---Ccc----------ccccC------------cccccccCCCCCCCC
Confidence 8999999 4566776 45677766421 000 10000 001145677899999
Q ss_pred hhhHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcchhhhccc
Q 011347 304 PEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL 348 (488)
Q Consensus 304 ~~E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti~~~lsvL 348 (488)
+.|+.||+|||++|+..++ +.+++++.+||+..+..++.+...+
T Consensus 230 ~rE~arlqgFPd~f~f~g~-~~~~~~~qiGNAVp~~~~~~I~~~i 273 (275)
T cd00315 230 PRECARLQGFPDDFEFPGK-SVTQAYRQIGNSVPVPVAEAIAKAI 273 (275)
T ss_pred HHHHHHHcCCCCCcEEcCC-CHHHHHHhhcCCcCHHHHHHHHHHH
Confidence 9999999999999998644 8999999999999988877766543
No 8
>PRK10458 DNA cytosine methylase; Provisional
Probab=98.69 E-value=1.3e-08 Score=109.22 Aligned_cols=56 Identities=11% Similarity=0.148 Sum_probs=48.3
Q ss_pred ccccCCCChhhHHHHhcC--CCCCccccCCChHHHHHhhhhhcccCcchhhhcccccc
Q 011347 296 AYKLGPVDPEHIELILGY--PSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSM 351 (488)
Q Consensus 296 ~~~~~ple~~E~E~i~Gf--P~~~T~~~~l~~teR~k~Lgnsfqvdti~~~lsvLK~~ 351 (488)
.++++.|||.|+-||+|| |..++....+|.++.||.+|||..|+++..++..|+.+
T Consensus 398 ~~~~RrLTprE~aRLqGF~~pd~~~F~~~vSdtq~Ykq~GNSV~Vpvv~aIa~~L~~~ 455 (467)
T PRK10458 398 QHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVVVPVFAAVAKLLEPK 455 (467)
T ss_pred cCCcccCCHHHHHHhCCCCCCccccccCCCCHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence 357899999999999999 55566556899999999999999999999888777664
No 9
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=98.51 E-value=2.6e-08 Score=97.93 Aligned_cols=54 Identities=9% Similarity=0.185 Sum_probs=41.7
Q ss_pred eecccccCCCChhhHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcchhhhccc
Q 011347 293 WVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL 348 (488)
Q Consensus 293 W~g~~~~~ple~~E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti~~~lsvL 348 (488)
.+.+.+.+.|++.|+.||+|||++|.. ..+.+++++.+||+..+.....+...|
T Consensus 280 ~~hp~~~R~LT~rE~aRLqgFPd~~~f--~g~~~~~~~qiGNAVpp~v~~~I~~~i 333 (335)
T PF00145_consen 280 FIHPEQNRRLTPREAARLQGFPDDFKF--PGSKTQQYKQIGNAVPPPVAEAIAKAI 333 (335)
T ss_dssp EBTTSSSCB-BHHHHHHHTTSSTTS-S---SSHHHHHHHHHCS--HHHHHHHHHHH
T ss_pred ccCCCCCCcCcHHHHHHhCCCCCceEc--cCCHHHHhceECCCcCHHHHHHHHHHh
Confidence 356789999999999999999999998 556669999999999888777766554
No 10
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.00 E-value=1.6e-05 Score=67.52 Aligned_cols=83 Identities=17% Similarity=0.199 Sum_probs=58.4
Q ss_pred CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccCCcc
Q 011347 355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
|.+|||+|||.|-+.+.+.+.| . ..++++|+|+.+....+.+....... ...++.+|++++.. .+ ..+.+|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~-~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-~~-----~~~~~D 72 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-A-ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE-PL-----PDGKFD 72 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-T-CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH-TC-----TTT-EE
T ss_pred CCEEEEcCcchHHHHHHHHHHC-C-CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh-hc-----cCceeE
Confidence 4689999999999999999998 2 35789999999999988876654321 22356677765531 11 236899
Q ss_pred EEEecCCCCCcc
Q 011347 434 FVICQNSVPQIP 445 (488)
Q Consensus 434 LVIGGpPCQ~FS 445 (488)
+|++-||.-+.+
T Consensus 73 ~Iv~npP~~~~~ 84 (117)
T PF13659_consen 73 LIVTNPPYGPRS 84 (117)
T ss_dssp EEEE--STTSBT
T ss_pred EEEECCCCcccc
Confidence 999999986543
No 11
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.00 E-value=1.1e-06 Score=89.51 Aligned_cols=177 Identities=15% Similarity=0.203 Sum_probs=93.3
Q ss_pred cCCCCccccccccccch----hhHHHHhhhh----ccCCceeeecccc-CcccccccccccCC---CCCCCCCCCC----
Q 011347 158 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLHNLP---TTNRFHIPPE---- 221 (488)
Q Consensus 158 ~~~ppfF~fENV~~~~~----~~w~~Is~fL----~~i~Pe~Vds~~f-sAa~R~RgY~hNLP---~~nR~~~~p~---- 221 (488)
..+|.+|++|||..+-. ..+..|-+-| |.+...++||..| .||+|+|.|+--.- ....+ ..|.
T Consensus 98 ~~~P~~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~~l~a~dyGvPQ~R~R~f~ia~r~~~~~~~~-~~p~~~~~ 176 (315)
T TIGR00675 98 EKKPKFFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYKVLNAKDFGVPQNRERIYIVGFRDFDDKLNF-EFPKPIYV 176 (315)
T ss_pred hcCCCEEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEEEEcHHHCCCCCCccEEEEEEEeCCCcCcCC-CCCCCccc
Confidence 45899999999987643 3566666555 6677889999999 99999999876322 11111 1232
Q ss_pred -CCCcccccccCCC----ccCCCcCCCcccceeeccC-------Cchh------HHHHHHHHHHhhccCCCchhhhHHHH
Q 011347 222 -PPMTIQDAIPHTK----KWWPSWDTRKHLSCINSGT-------SGIS------QLCERFEKLLRDSRGVLSSQQQRDIL 283 (488)
Q Consensus 222 -~p~tiqd~lp~~~----~~wp~wd~r~kl~ci~t~~-------~~~~------~l~~~i~~~~~~~~~~~~~~~q~~vl 283 (488)
...||.|++.... .|.++-...+.+..+.... .+.. ......+++..+.... ...+..+.
T Consensus 177 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~t~~ 254 (315)
T TIGR00675 177 AKKKRIGDLLDLSVDLEEKYYLSEEKKNGLLLLLENMRKKEGTGEQIGSFYNRESKSSIIRTLSARGYTF--VKGGKSVL 254 (315)
T ss_pred ccccchHHhcccccCcCCcEEeCHHHHHHHHHHhhccccccccccccceeeccCCccceeeeeecccccc--CCCCccee
Confidence 2567888775321 1111100000000000000 0000 0000000000000000 00000000
Q ss_pred HhhcccceeeecccccCCCChhhHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcc
Q 011347 284 HRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTL 341 (488)
Q Consensus 284 ~~c~k~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti 341 (488)
..+. .+.. .-+.+.+.|++.|.-||+|||++|.. ..+.+..++.+||+.-+...
T Consensus 255 ~~~~-~~~~-~hp~~~R~lT~RE~aRLQ~FPd~f~f--~~s~~~~~~qiGNAVPp~la 308 (315)
T TIGR00675 255 IVPH-KSTV-VHPGRIRRLTPRECARLQGFPDDFKF--PVSDSQLYKQAGNAVVVPVI 308 (315)
T ss_pred eccc-ccee-ccCCceeeCCHHHHHHHcCCCcccEe--CCCHHHHHhhhCCcccHHHH
Confidence 0010 0111 23567799999999999999999976 57999999999999755443
No 12
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.71 E-value=1.7e-05 Score=81.35 Aligned_cols=176 Identities=14% Similarity=0.157 Sum_probs=97.0
Q ss_pred cCCCCccccccccccchh---hHHHHhhhhcc----CCceeeeccc-cCcccccccccc-----cCCCCCCCCCCCC---
Q 011347 158 VAQPPYFFYGNVVDVSID---CWVKMSHFLYS----LEPEFVNSQY-FSALSRREGYLH-----NLPTTNRFHIPPE--- 221 (488)
Q Consensus 158 ~~~ppfF~fENV~~~~~~---~w~~Is~fL~~----i~Pe~Vds~~-fsAa~R~RgY~h-----NLP~~nR~~~~p~--- 221 (488)
..+|.||++|||..|-.. .|+.|.+-|.. ++..++||++ -.||+|.|-|+. |+-.+.--. .+.
T Consensus 106 ~~~P~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~~~~~ilna~dyGvPQ~ReRvfiig~~~~~~~~~~~~~-~~~~~~ 184 (328)
T COG0270 106 QLRPKFFVLENVKGLLSSKGQTFDEIKKELEELGYGVEFNILNAADYGVPQSRERVFIVGFRRDNIDLDPNVL-PPLPLG 184 (328)
T ss_pred hhCCCEEEEecCchHHhcCchHHHHHHHHHHHcCCcchHheeeHHhcCCCCCccEEEEEEecCcccccccccc-Cccccc
Confidence 456799999999999886 88888888754 4456677665 478999999999 777775311 111
Q ss_pred CCCcccccc-----cCCCccCC-CcCCCcccceeeccCCchhHHHHHHHHH--------Hhhcc----------CCCchh
Q 011347 222 PPMTIQDAI-----PHTKKWWP-SWDTRKHLSCINSGTSGISQLCERFEKL--------LRDSR----------GVLSSQ 277 (488)
Q Consensus 222 ~p~tiqd~l-----p~~~~~wp-~wd~r~kl~ci~t~~~~~~~l~~~i~~~--------~~~~~----------~~~~~~ 277 (488)
...++.+++ +.+..-|. .+...-+.+-+... ...++... ..... ..+...
T Consensus 185 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~t 258 (328)
T COG0270 185 RKKTLKEALKNNDLPETDELYLSRDLRNHEAKSLPKN------KGERLPSLRWGEALTLSRRYKGKGSYIRLHPDKPAPT 258 (328)
T ss_pred cccchhhhhhhccCcchhhhhccccccccccccCchh------hhccccccccccccccccccCCCceeEeCCCCCCCce
Confidence 122222222 11110000 00000000000000 00000000 00000 000000
Q ss_pred hhHHHHHhhcccceeeecccccCCCChhhHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcchhhhcccc
Q 011347 278 QQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLK 349 (488)
Q Consensus 278 ~q~~vl~~c~k~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti~~~lsvLK 349 (488)
+ . ...+-.=+-+..-+.|++.|+-+|+|||+.|...+ |.+..++.+||+..+....++.+-+.
T Consensus 259 ~----~---~~~~~~~~h~~~~r~lt~rE~arlq~fPd~~~~~g--s~~~~~~qiGnsVp~~l~~~ia~~i~ 321 (328)
T COG0270 259 V----R---GGGNERFIHPLEDRELTVREAARLQGFPDDFVFPG--SKTDQYRQIGNSVPPLLAEAIAKAIL 321 (328)
T ss_pred e----e---cCCCcccCCCCcCCCCCHHHHHHhcCCCCceEEec--cchhhhhhccCcCCHHHHHHHHHHHH
Confidence 0 0 01111112355666799999999999999999975 99999999999988877777655443
No 13
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.56 E-value=0.00011 Score=69.85 Aligned_cols=82 Identities=22% Similarity=0.261 Sum_probs=49.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+.+|||||||.|.+.+=.-.-|.. -|+.||.|+.+.++++.+....+... ..++..|... .+..+......|
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~--~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~----~l~~~~~~~~~f 115 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAK--SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFK----FLLKLAKKGEKF 115 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHH----HHHHHHHCTS-E
T ss_pred CCCeEEEcCCccCccHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHH----HHHhhcccCCCc
Confidence 5788999999999876644455764 58899999999999999887654222 1123333321 122222234689
Q ss_pred cEEEecCCC
Q 011347 433 DFVICQNSV 441 (488)
Q Consensus 433 DLVIGGpPC 441 (488)
|||.--||=
T Consensus 116 DiIflDPPY 124 (183)
T PF03602_consen 116 DIIFLDPPY 124 (183)
T ss_dssp EEEEE--ST
T ss_pred eEEEECCCc
Confidence 999999983
No 14
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.45 E-value=0.00028 Score=69.95 Aligned_cols=80 Identities=16% Similarity=0.249 Sum_probs=57.4
Q ss_pred CCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 355 GLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
..+||||+||.|.+.+.+... |. .++++|+|+.+.+..+.+.... +..+..+|+.+.-...+ .+.|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~---~v~~vDis~~al~~A~~N~~~~---~~~~~~~D~~~~l~~~~------~~~f 154 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGI---ELHAADIDPAAVRCARRNLADA---GGTVHEGDLYDALPTAL------RGRV 154 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHc---CCEEEEeechhhcchhc------CCCE
Confidence 458999999999999988654 33 3688999999998888765432 12355677754321111 2579
Q ss_pred cEEEecCCCCCccc
Q 011347 433 DFVICQNSVPQIPN 446 (488)
Q Consensus 433 DLVIGGpPCQ~FS~ 446 (488)
|+|+.-|||.+.+.
T Consensus 155 DlVv~NPPy~~~~~ 168 (251)
T TIGR03704 155 DILAANAPYVPTDA 168 (251)
T ss_pred eEEEECCCCCCchh
Confidence 99999999998763
No 15
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.44 E-value=0.00023 Score=74.32 Aligned_cols=95 Identities=21% Similarity=0.255 Sum_probs=68.1
Q ss_pred cccCcchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-Ccceeccc
Q 011347 336 FQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDI 414 (488)
Q Consensus 336 fqvdti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI 414 (488)
|+.-...-+..+++...+ |-+|+|+|||+|-+++-.-+.|-. + |+|+|||+.|.+-++.+-.-+.-.+ ...+++|.
T Consensus 171 Fsprl~~ER~Rva~~v~~-GE~V~DmFAGVGpfsi~~Ak~g~~-~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~ 247 (341)
T COG2520 171 FSPRLSTERARVAELVKE-GETVLDMFAGVGPFSIPIAKKGRP-K-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDA 247 (341)
T ss_pred ECCCchHHHHHHHhhhcC-CCEEEEccCCcccchhhhhhcCCc-e-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccH
Confidence 444444445556655544 899999999999999999999953 4 8999999999999988654222222 22456777
Q ss_pred cccChhhHHHhhhccCCccEEEecCCC
Q 011347 415 QALTTKKFESLIHKLGSIDFVICQNSV 441 (488)
Q Consensus 415 ~~L~~~~Ie~l~~~~g~~DLVIGGpPC 441 (488)
+++... .+.+|=|+-|-|=
T Consensus 248 rev~~~--------~~~aDrIim~~p~ 266 (341)
T COG2520 248 REVAPE--------LGVADRIIMGLPK 266 (341)
T ss_pred HHhhhc--------cccCCEEEeCCCC
Confidence 766542 2679988888884
No 16
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.42 E-value=0.00038 Score=66.38 Aligned_cols=83 Identities=17% Similarity=0.064 Sum_probs=55.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+-+|||||||.|.+.+.+-..|-. .|++||+++.+.++.+.+....+... ..++.+|+.+. +..+......+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~----l~~~~~~~~~~ 122 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA----LKFLAKKPTFD 122 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH----HHHhhccCCCc
Confidence 4568999999999999999888864 48899999999999998776443211 12344555321 11111111237
Q ss_pred cEEEecCCCC
Q 011347 433 DFVICQNSVP 442 (488)
Q Consensus 433 DLVIGGpPCQ 442 (488)
|+|+--||=.
T Consensus 123 dvv~~DPPy~ 132 (189)
T TIGR00095 123 NVIYLDPPFF 132 (189)
T ss_pred eEEEECcCCC
Confidence 8998888753
No 17
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.40 E-value=0.00036 Score=67.70 Aligned_cols=81 Identities=22% Similarity=0.283 Sum_probs=49.8
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCc-ceeccccccChhhHHHhhhccC
Q 011347 352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIHKLG 430 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~l-v~~~DI~~L~~~~Ie~l~~~~g 430 (488)
+..+-+|+|+|||+|.+++-+-+.+ +.+.|+|+|+|+.|.+.++.+-..++-.+.+ +..+|.+++-. .+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~---------~~ 168 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP---------EG 168 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG------------TT
T ss_pred CCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC---------cc
Confidence 4567899999999999999887733 2356899999999999998866543333332 35677766543 24
Q ss_pred CccEEEecCCCC
Q 011347 431 SIDFVICQNSVP 442 (488)
Q Consensus 431 ~~DLVIGGpPCQ 442 (488)
.+|-|+.+.|=.
T Consensus 169 ~~drvim~lp~~ 180 (200)
T PF02475_consen 169 KFDRVIMNLPES 180 (200)
T ss_dssp -EEEEEE--TSS
T ss_pred ccCEEEECChHH
Confidence 689999888733
No 18
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.29 E-value=0.00034 Score=66.14 Aligned_cols=82 Identities=24% Similarity=0.248 Sum_probs=49.1
Q ss_pred cccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcC-CCCCcceeccccccChhhHHHhhhccCC-ccE
Q 011347 357 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-QTGELVQIEDIQALTTKKFESLIHKLGS-IDF 434 (488)
Q Consensus 357 tVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n-~~g~lv~~~DI~~L~~~~Ie~l~~~~g~-~DL 434 (488)
+|||+|||+||=++.|-+.+ ..|++||+|+...+..+.+-.-.. .....++.+|..++-.. + +... +|+
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~----~--~~~~~~D~ 72 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKR----L--KSNKIFDV 72 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGG----B--------SE
T ss_pred EEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhh----c--cccccccE
Confidence 58999999999999999985 358999999999888876543221 11122445665543211 0 1122 799
Q ss_pred EEecCCCCCcccc
Q 011347 435 VICQNSVPQIPNS 447 (488)
Q Consensus 435 VIGGpPCQ~FS~a 447 (488)
|...||=-+.+..
T Consensus 73 vFlSPPWGGp~Y~ 85 (163)
T PF09445_consen 73 VFLSPPWGGPSYS 85 (163)
T ss_dssp EEE---BSSGGGG
T ss_pred EEECCCCCCcccc
Confidence 9999998887764
No 19
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.28 E-value=0.00068 Score=71.89 Aligned_cols=82 Identities=20% Similarity=0.197 Sum_probs=57.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC--CCcceeccccccChhhHHHhhhccCC
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~--g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
.+-+|||||||+||+++..-..|- .-|++||+++.+.+..+.+...++.. ...++.+|+.+.- ..+....+.
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l----~~~~~~~~~ 293 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLL----RTYRDRGEK 293 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHH----HHHHhcCCC
Confidence 467899999999999887666664 34789999999999998887643321 1224567775432 222212357
Q ss_pred ccEEEecCCC
Q 011347 432 IDFVICQNSV 441 (488)
Q Consensus 432 ~DLVIGGpPC 441 (488)
||+|+--||+
T Consensus 294 fDlVilDPP~ 303 (396)
T PRK15128 294 FDVIVMDPPK 303 (396)
T ss_pred CCEEEECCCC
Confidence 9999999997
No 20
>PHA03412 putative methyltransferase; Provisional
Probab=97.24 E-value=0.00052 Score=68.64 Aligned_cols=122 Identities=16% Similarity=0.172 Sum_probs=81.3
Q ss_pred CCCChhhHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcchhhhccccccCCCCCcccccCCCCChhHHHHHHcC--C
Q 011347 300 GPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLG--I 377 (488)
Q Consensus 300 ~ple~~E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aG--i 377 (488)
++|+-+|.|-++ .||+.. . .--.+.+|-.|....+++++... . . .+.+|||+.||.|.+.+.+-+.- -
T Consensus 5 ~~~~~~~~~f~~---~n~~~~-~---~~~~~~~GqFfTP~~iAr~~~i~-~-~-~~grVLDlG~GSG~Lalala~~~~~~ 74 (241)
T PHA03412 5 KALTYEEKLFII---ENFHEG-A---FTNNSELGAFFTPIGLARDFTID-A-C-TSGSVVDLCAGIGGLSFAMVHMMMYA 74 (241)
T ss_pred ccccHHHHHHHH---hhcccc-c---ccccccCCccCCCHHHHHHHHHh-c-c-CCCEEEEccChHHHHHHHHHHhcccC
Confidence 467777877776 477762 1 12235568888888888776422 1 2 36799999999999998876531 0
Q ss_pred eeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEEEecCCCCCcc
Q 011347 378 KLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIP 445 (488)
Q Consensus 378 ~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ~FS 445 (488)
+-..|.+||||+.+.+..+.+ .....++..|+..... .+.||+||+=||=-...
T Consensus 75 ~~~~V~aVEID~~Al~~Ar~n-----~~~~~~~~~D~~~~~~---------~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 75 KPREIVCVELNHTYYKLGKRI-----VPEATWINADALTTEF---------DTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCcEEEEEECCHHHHHHHHhh-----ccCCEEEEcchhcccc---------cCCccEEEECCCCCCcc
Confidence 112478999999998887653 2223356677764321 14799999999866543
No 21
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.21 E-value=0.00089 Score=60.29 Aligned_cols=84 Identities=21% Similarity=0.287 Sum_probs=62.2
Q ss_pred CCCcccccCCCCChhHHHHH-HcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~-~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+.+||||-||.|-+...|. +++-..+ ++++|+++.+.+..+......+.....++.+||.++... ++ +.|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~-i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~~------~~~ 74 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAK-IIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-LE------EKF 74 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSE-EEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-SS------TTE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCE-EEEEECcHHHHHHhhcccccccccccceEEeehhccccc-cC------CCe
Confidence 56899999999999999999 5554333 789999999999888765544433344677999887643 32 489
Q ss_pred cEEEecCCCCCcc
Q 011347 433 DFVICQNSVPQIP 445 (488)
Q Consensus 433 DLVIGGpPCQ~FS 445 (488)
|+|+...++..+.
T Consensus 75 D~I~~~~~l~~~~ 87 (152)
T PF13847_consen 75 DIIISNGVLHHFP 87 (152)
T ss_dssp EEEEEESTGGGTS
T ss_pred eEEEEcCchhhcc
Confidence 9999998884443
No 22
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.20 E-value=0.0012 Score=63.95 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=52.4
Q ss_pred CCCcccccCCCCChhHHH-HHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVT-LHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslG-L~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+-+|||||||.|.+.+. +.+ |. .-|++||+++.+.+..+.+....+.....++.+|+.+. +. ...+.+
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr-~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~----l~---~~~~~f 122 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSR-YA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF----LA---QPGTPH 122 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHc-CC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH----Hh---hcCCCc
Confidence 346899999999999985 444 43 24789999999999998877554322223445555321 11 112469
Q ss_pred cEEEecCC
Q 011347 433 DFVICQNS 440 (488)
Q Consensus 433 DLVIGGpP 440 (488)
|+|+--||
T Consensus 123 DlV~~DPP 130 (199)
T PRK10909 123 NVVFVDPP 130 (199)
T ss_pred eEEEECCC
Confidence 99999999
No 23
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.06 E-value=0.0014 Score=66.90 Aligned_cols=81 Identities=22% Similarity=0.214 Sum_probs=57.5
Q ss_pred CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347 355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 434 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL 434 (488)
+-+|||||||.|.+++.|.+.|- -|+++|+++.+.+..+.+....+.....++.+|+.++... ..+.+|+
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~-------~~~~~D~ 243 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA-------QGEVPDL 243 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh-------cCCCCeE
Confidence 46899999999999999988774 4789999999998887765433221223455666543211 1246899
Q ss_pred EEecCCCCCcc
Q 011347 435 VICQNSVPQIP 445 (488)
Q Consensus 435 VIGGpPCQ~FS 445 (488)
|+--||+.+..
T Consensus 244 Vv~dPPr~G~~ 254 (315)
T PRK03522 244 VLVNPPRRGIG 254 (315)
T ss_pred EEECCCCCCcc
Confidence 99999977653
No 24
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.03 E-value=0.0023 Score=59.46 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=54.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
..-++|||-||+|-+++.+.+.+-..+ |.++|+++.|....+.+....+-....+...|+.+-- ..+.+|
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~-v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~---------~~~~fD 100 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAK-VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL---------PDGKFD 100 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEE-EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC---------CTTCEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHHhcCccccccccccccccc---------ccccee
Confidence 457899999999999999999887654 8899999999999988876543222223445553211 125899
Q ss_pred EEEecCC
Q 011347 434 FVICQNS 440 (488)
Q Consensus 434 LVIGGpP 440 (488)
+|+.-||
T Consensus 101 ~Iv~NPP 107 (170)
T PF05175_consen 101 LIVSNPP 107 (170)
T ss_dssp EEEE---
T ss_pred EEEEccc
Confidence 9999999
No 25
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.02 E-value=0.0012 Score=69.03 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=54.1
Q ss_pred CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347 355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 434 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL 434 (488)
+-+|||||||+|.+++.+...|- -|++||+++.+.+..+.+....+.....+..+|+.++... ..+.+|+
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~-------~~~~~D~ 303 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA-------QMSAPEL 303 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh-------cCCCCCE
Confidence 45899999999999998887763 4789999999999988876543222222455666543211 1145899
Q ss_pred EEecCC
Q 011347 435 VICQNS 440 (488)
Q Consensus 435 VIGGpP 440 (488)
|+-=||
T Consensus 304 vi~DPP 309 (374)
T TIGR02085 304 VLVNPP 309 (374)
T ss_pred EEECCC
Confidence 999998
No 26
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.01 E-value=0.0038 Score=63.92 Aligned_cols=82 Identities=21% Similarity=0.182 Sum_probs=58.1
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
+.+.+|||+|||.|++.+.+...|.. ++++|+|+...+..+.+....+.....+..+|+.++... .+.+
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~~---v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~--------~~~~ 249 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGAK---VIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS--------SESV 249 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCCe---EEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc--------cCCC
Confidence 35678999999999998777777753 688999998877666655433322223456777766421 2479
Q ss_pred cEEEecCCCCCcc
Q 011347 433 DFVICQNSVPQIP 445 (488)
Q Consensus 433 DLVIGGpPCQ~FS 445 (488)
|+|+.-|||...+
T Consensus 250 D~Iv~dPPyg~~~ 262 (329)
T TIGR01177 250 DAIATDPPYGRST 262 (329)
T ss_pred CEEEECCCCcCcc
Confidence 9999999986544
No 27
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.96 E-value=0.0019 Score=64.39 Aligned_cols=85 Identities=13% Similarity=0.099 Sum_probs=57.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||++||.||.++.+..+--+--.|+++|+++...+.++.+....+.....+...|.+++.. ..+.||
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~--------~~~~fD 142 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGA--------AVPKFD 142 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhh--------hccCCC
Confidence 467899999999999988755311111478999999998888876654332222233455443321 125699
Q ss_pred EEEecCCCCCccc
Q 011347 434 FVICQNSVPQIPN 446 (488)
Q Consensus 434 LVIGGpPCQ~FS~ 446 (488)
.|+--+||.+...
T Consensus 143 ~Vl~D~Pcsg~G~ 155 (264)
T TIGR00446 143 AILLDAPCSGEGV 155 (264)
T ss_pred EEEEcCCCCCCcc
Confidence 9999999986654
No 28
>PHA03411 putative methyltransferase; Provisional
Probab=96.78 E-value=0.0028 Score=64.72 Aligned_cols=93 Identities=17% Similarity=0.224 Sum_probs=64.9
Q ss_pred hhhcccCcchhhhccccccCCCCCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcce
Q 011347 333 RHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQ 410 (488)
Q Consensus 333 gnsfqvdti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~ 410 (488)
|-.|..+.+.++| ++... .+-+|||++||+|.+.+.+... +. .|+++|+++.+.+..+..+ +...++
T Consensus 46 G~FfTP~~i~~~f-~~~~~--~~grVLDLGcGsGilsl~la~r~~~~---~V~gVDisp~al~~Ar~n~-----~~v~~v 114 (279)
T PHA03411 46 GAFFTPEGLAWDF-TIDAH--CTGKVLDLCAGIGRLSFCMLHRCKPE---KIVCVELNPEFARIGKRLL-----PEAEWI 114 (279)
T ss_pred eeEcCCHHHHHHH-Hhccc--cCCeEEEcCCCCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHhC-----cCCEEE
Confidence 6677888888877 33332 2358999999999998777443 33 3789999999887776532 223356
Q ss_pred eccccccChhhHHHhhhccCCccEEEecCCCCCcc
Q 011347 411 IEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIP 445 (488)
Q Consensus 411 ~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ~FS 445 (488)
.+|+.++.. ...||+|++-||-....
T Consensus 115 ~~D~~e~~~---------~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 115 TSDVFEFES---------NEKFDVVISNPPFGKIN 140 (279)
T ss_pred ECchhhhcc---------cCCCcEEEEcCCccccC
Confidence 677765431 14699999999887654
No 29
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=96.74 E-value=0.0048 Score=65.32 Aligned_cols=83 Identities=12% Similarity=0.129 Sum_probs=57.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+-+|||||||+|.+++.|.+.+- .|+++|+++.+.+..+.+....+.....++.+|+.++ +..+....+.+|
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~----l~~~~~~~~~~D 364 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETV----LPKQPWAGQIPD 364 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHH----HHHHHhcCCCCC
Confidence 446899999999999999988763 4789999999998888765433322333556776542 111111124589
Q ss_pred EEEecCCCCC
Q 011347 434 FVICQNSVPQ 443 (488)
Q Consensus 434 LVIGGpPCQ~ 443 (488)
+|+--||.-+
T Consensus 365 ~vi~dPPr~G 374 (431)
T TIGR00479 365 VLLLDPPRKG 374 (431)
T ss_pred EEEECcCCCC
Confidence 9999999765
No 30
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.74 E-value=0.0036 Score=66.92 Aligned_cols=84 Identities=12% Similarity=0.104 Sum_probs=58.6
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+-+|||++||.||.+..+-++ +-. ..|+++|+++...+..+.+....+.....+..+|..++.. .+.|
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~-~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~---------~~~f 319 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNR-GQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP---------EEQP 319 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc---------CCCC
Confidence 4578999999999988766542 211 2478999999998888876654432222345567665431 1469
Q ss_pred cEEEecCCCCCcccc
Q 011347 433 DFVICQNSVPQIPNS 447 (488)
Q Consensus 433 DLVIGGpPCQ~FS~a 447 (488)
|+|+-.+||.+....
T Consensus 320 D~Vl~D~Pcsg~g~~ 334 (445)
T PRK14904 320 DAILLDAPCTGTGVL 334 (445)
T ss_pred CEEEEcCCCCCcchh
Confidence 999999999888753
No 31
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.69 E-value=0.0066 Score=59.44 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=57.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||+.||.|.+.+.+....-. ..++++|+++.+.+..+.+..........+...|+.+-. ..+.||
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~-~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~---------~~~~fD 177 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPD-AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL---------PGGRFD 177 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC---------CCCcee
Confidence 4578999999999999998876522 347899999999888877654111122234456653211 025799
Q ss_pred EEEecCCCCCccc
Q 011347 434 FVICQNSVPQIPN 446 (488)
Q Consensus 434 LVIGGpPCQ~FS~ 446 (488)
+|+.-||+-+.+.
T Consensus 178 ~Iv~npPy~~~~~ 190 (275)
T PRK09328 178 LIVSNPPYIPEAD 190 (275)
T ss_pred EEEECCCcCCcch
Confidence 9999999977653
No 32
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.67 E-value=0.0038 Score=65.19 Aligned_cols=79 Identities=13% Similarity=0.114 Sum_probs=53.6
Q ss_pred CcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhc-------
Q 011347 356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK------- 428 (488)
Q Consensus 356 itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~------- 428 (488)
-+|||||||.|++++++.+.. +-|++||+++.+.+..+.+-...+.....++.+|+.++-. .+..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~----~~~~~~~~~~~~ 280 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQ----AMNGVREFNRLK 280 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHH----HHhhcccccccc
Confidence 469999999999999988764 3478999999999988876433222122355677755321 11110
Q ss_pred -----cCCccEEEecCCC
Q 011347 429 -----LGSIDFVICQNSV 441 (488)
Q Consensus 429 -----~g~~DLVIGGpPC 441 (488)
...+|+|+=-||=
T Consensus 281 ~~~~~~~~~D~v~lDPPR 298 (362)
T PRK05031 281 GIDLKSYNFSTIFVDPPR 298 (362)
T ss_pred cccccCCCCCEEEECCCC
Confidence 1148999999993
No 33
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=96.66 E-value=0.0049 Score=56.85 Aligned_cols=76 Identities=18% Similarity=0.066 Sum_probs=55.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+-+|||++||.|.++..+.+.+- .++++|+|+.+...++.+... .....++.+|+.++.... ..+|
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~--------~~~d 79 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPK--------LQPY 79 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccc--------cCCC
Confidence 456899999999999998888763 478999999999888876532 112235667877664211 2589
Q ss_pred EEEecCCCC
Q 011347 434 FVICQNSVP 442 (488)
Q Consensus 434 LVIGGpPCQ 442 (488)
+|++.+|=+
T Consensus 80 ~vi~n~Py~ 88 (169)
T smart00650 80 KVVGNLPYN 88 (169)
T ss_pred EEEECCCcc
Confidence 999998854
No 34
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=96.64 E-value=0.0077 Score=55.88 Aligned_cols=77 Identities=14% Similarity=0.168 Sum_probs=56.4
Q ss_pred CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347 355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 434 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL 434 (488)
+-+||||.||.|.++..+...|. .++++|+++.+.+..+.+.... +....+..+|+.+.. .+.+|+
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~----------~~~fD~ 85 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLN-NVGLDVVMTDLFKGV----------RGKFDV 85 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHc-CCceEEEEccccccc----------CCcccE
Confidence 35799999999999999999885 4789999999988877755322 222223456654321 147999
Q ss_pred EEecCCCCCcc
Q 011347 435 VICQNSVPQIP 445 (488)
Q Consensus 435 VIGGpPCQ~FS 445 (488)
|+..+|+...+
T Consensus 86 Vi~n~p~~~~~ 96 (179)
T TIGR00537 86 ILFNPPYLPLE 96 (179)
T ss_pred EEECCCCCCCc
Confidence 99999997665
No 35
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.61 E-value=0.0068 Score=58.67 Aligned_cols=100 Identities=22% Similarity=0.253 Sum_probs=61.8
Q ss_pred ChHHHH-HhhhhhcccCcchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhc
Q 011347 324 SLTARL-ESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS 402 (488)
Q Consensus 324 ~~teR~-k~Lgnsfqvdti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~ 402 (488)
..++|. .+|-|. |.+.+-.+-++||||||.|++.+=.-.-|. .-++.||.|..+..+++.|-...
T Consensus 24 PT~drVREalFNi------------l~~~~i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l 89 (187)
T COG0742 24 PTTDRVREALFNI------------LAPDEIEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKAL 89 (187)
T ss_pred CCchHHHHHHHHh------------ccccccCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHh
Confidence 556777 344444 433233678899999999987543334455 34788999999999999876544
Q ss_pred CCCC-CcceeccccccChhhHHHhhhccCCccEEEecCCCC
Q 011347 403 GQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP 442 (488)
Q Consensus 403 n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ 442 (488)
+..+ ..++..|.. ....-....+.||+|.==||=.
T Consensus 90 ~~~~~~~~~~~da~-----~~L~~~~~~~~FDlVflDPPy~ 125 (187)
T COG0742 90 GLEGEARVLRNDAL-----RALKQLGTREPFDLVFLDPPYA 125 (187)
T ss_pred CCccceEEEeecHH-----HHHHhcCCCCcccEEEeCCCCc
Confidence 3112 112333332 1111112234599999999976
No 36
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.56 E-value=0.0061 Score=64.84 Aligned_cols=84 Identities=12% Similarity=0.162 Sum_probs=60.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+-+|||++||.||.+..+.+++-. ..|+++|+++......+.+....+.. ..++.+|+.++... . ..+.||
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~~-----~-~~~~fD 315 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQW-----W-DGQPFD 315 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchhh-----c-ccCCCC
Confidence 4678999999999999888776522 25789999999998888876543322 23556777754320 0 124699
Q ss_pred EEEecCCCCCcc
Q 011347 434 FVICQNSVPQIP 445 (488)
Q Consensus 434 LVIGGpPCQ~FS 445 (488)
+|+-.+||.+..
T Consensus 316 ~Vl~D~Pcs~~G 327 (427)
T PRK10901 316 RILLDAPCSATG 327 (427)
T ss_pred EEEECCCCCccc
Confidence 999999998754
No 37
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=96.52 E-value=0.0074 Score=64.45 Aligned_cols=85 Identities=19% Similarity=0.214 Sum_probs=58.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||||||.|.+++.|.+.+. .|+++|+++.+.+..+.+-...+.....++.+|+.+.-.+ +....+.||
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~----~~~~~~~fD 369 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTD----QPWALGGFD 369 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhh----hhhhcCCCC
Confidence 456899999999999999988763 4789999999998887755332222233556777543211 000114699
Q ss_pred EEEecCCCCCcc
Q 011347 434 FVICQNSVPQIP 445 (488)
Q Consensus 434 LVIGGpPCQ~FS 445 (488)
+|+--||+.+..
T Consensus 370 ~Vi~dPPr~g~~ 381 (443)
T PRK13168 370 KVLLDPPRAGAA 381 (443)
T ss_pred EEEECcCCcChH
Confidence 999999987654
No 38
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.50 E-value=0.0069 Score=68.53 Aligned_cols=82 Identities=18% Similarity=0.196 Sum_probs=59.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC--CCcceeccccccChhhHHHhhhccCC
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~--g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
++-+|||||||.||+++.+-..|.. .|++||+++.+.+..+.+...++.. ...++.+|+.+. ++. ..+.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~----l~~---~~~~ 608 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW----LKE---AREQ 608 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH----HHH---cCCC
Confidence 4678999999999999999998863 4889999999999998877543221 122445665432 111 1257
Q ss_pred ccEEEecCCCCCc
Q 011347 432 IDFVICQNSVPQI 444 (488)
Q Consensus 432 ~DLVIGGpPCQ~F 444 (488)
||+||-=||.-.-
T Consensus 609 fDlIilDPP~f~~ 621 (702)
T PRK11783 609 FDLIFIDPPTFSN 621 (702)
T ss_pred cCEEEECCCCCCC
Confidence 9999999997543
No 39
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.49 E-value=0.007 Score=64.55 Aligned_cols=85 Identities=18% Similarity=0.266 Sum_probs=59.4
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+-+|||++||.||.++.+.++ |=. ..++++|+++...+..+.+....+.....+..+|+.++.. .+ .+.|
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~-~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~-~~------~~~f 321 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNT-GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHE-KF------AEKF 321 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccc-hh------cccC
Confidence 4568999999999999887653 211 2478999999998888876654432223345677765431 11 1479
Q ss_pred cEEEecCCCCCccc
Q 011347 433 DFVICQNSVPQIPN 446 (488)
Q Consensus 433 DLVIGGpPCQ~FS~ 446 (488)
|+|+-.+||.++..
T Consensus 322 D~Vl~D~Pcsg~G~ 335 (444)
T PRK14902 322 DKILVDAPCSGLGV 335 (444)
T ss_pred CEEEEcCCCCCCee
Confidence 99999999987654
No 40
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=96.40 E-value=0.0045 Score=43.87 Aligned_cols=34 Identities=32% Similarity=0.423 Sum_probs=28.0
Q ss_pred hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhh
Q 011347 2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKI 37 (488)
Q Consensus 2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i 37 (488)
+++.+|++|||+++++..|+.+|+-| ++.-++.+
T Consensus 3 ~~v~~L~~mGf~~~~a~~aL~~~~~d--~~~A~~~L 36 (37)
T smart00165 3 EKIDQLLEMGFSREEALKALRAANGN--VERAAEYL 36 (37)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHH
Confidence 45689999999999999999999987 55555544
No 41
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.40 E-value=0.01 Score=57.83 Aligned_cols=73 Identities=21% Similarity=0.238 Sum_probs=57.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+-+|+||=||+|=+++|..-+|- .-|++||+|+.+..+.+.+-.. ..-...+...||+++. +.+|
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~~-----------~~~d 110 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDFR-----------GKFD 110 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhcC-----------Cccc
Confidence 456799999999999999999996 4589999999999999986543 1111335567777665 5789
Q ss_pred EEEecCC
Q 011347 434 FVICQNS 440 (488)
Q Consensus 434 LVIGGpP 440 (488)
.+|--||
T Consensus 111 tvimNPP 117 (198)
T COG2263 111 TVIMNPP 117 (198)
T ss_pred eEEECCC
Confidence 9999887
No 42
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.35 E-value=0.0094 Score=63.54 Aligned_cols=89 Identities=15% Similarity=0.150 Sum_probs=59.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||++||.||.+..+.++.-.--.|+++|+++...+.++.+....+.....+..+|..++.... ....+.||
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~----~~~~~~fD 327 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELK----PQWRGYFD 327 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccc----ccccccCC
Confidence 46789999999999998877641111247899999998888877655443323334556766553110 00124799
Q ss_pred EEEecCCCCCccc
Q 011347 434 FVICQNSVPQIPN 446 (488)
Q Consensus 434 LVIGGpPCQ~FS~ 446 (488)
.|+-.+||.+...
T Consensus 328 ~Vl~DaPCSg~G~ 340 (434)
T PRK14901 328 RILLDAPCSGLGT 340 (434)
T ss_pred EEEEeCCCCcccc
Confidence 9999999988544
No 43
>PRK14967 putative methyltransferase; Provisional
Probab=96.33 E-value=0.0086 Score=57.76 Aligned_cols=77 Identities=18% Similarity=0.189 Sum_probs=53.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+-+|||++||.|.+.+.+.+.|. ..++++|+++.+.+..+.+....+ ....++.+|+.+.- ..+.||
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~-~~~~~~~~d~~~~~---------~~~~fD 103 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAG-VDVDVRRGDWARAV---------EFRPFD 103 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhC-CeeEEEECchhhhc---------cCCCee
Confidence 456899999999999998888875 347899999998877766543221 12224445554321 125799
Q ss_pred EEEecCCCC
Q 011347 434 FVICQNSVP 442 (488)
Q Consensus 434 LVIGGpPCQ 442 (488)
+|+..||-.
T Consensus 104 ~Vi~npPy~ 112 (223)
T PRK14967 104 VVVSNPPYV 112 (223)
T ss_pred EEEECCCCC
Confidence 999998744
No 44
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.31 E-value=0.011 Score=46.26 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=52.0
Q ss_pred cccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEEE
Q 011347 357 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI 436 (488)
Q Consensus 357 tVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVI 436 (488)
+++|+.||.|++...+-+.+ ...++++|+++.+....+............+...|+.+... ...+++|+|+
T Consensus 1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~d~i~ 71 (107)
T cd02440 1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP-------EADESFDVII 71 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-------ccCCceEEEE
Confidence 57999999999998887733 24578999999987766532111111122234466655432 1236899999
Q ss_pred ecCCCCCc
Q 011347 437 CQNSVPQI 444 (488)
Q Consensus 437 GGpPCQ~F 444 (488)
..+||..+
T Consensus 72 ~~~~~~~~ 79 (107)
T cd02440 72 SDPPLHHL 79 (107)
T ss_pred Eccceeeh
Confidence 99998864
No 45
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.31 E-value=0.0099 Score=57.07 Aligned_cols=82 Identities=15% Similarity=0.148 Sum_probs=57.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||+.||.|.+...+....-. ..++++|+++.+.+..+.+....+.....+..+|+.+.- ..+.+|
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---------~~~~fD 156 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPD-ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL---------PGGKFD 156 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC---------cCCcee
Confidence 4568999999999999988876312 247899999999888877654432222234556654311 125799
Q ss_pred EEEecCCCCCcc
Q 011347 434 FVICQNSVPQIP 445 (488)
Q Consensus 434 LVIGGpPCQ~FS 445 (488)
+|+.-||+...+
T Consensus 157 ~Vi~npPy~~~~ 168 (251)
T TIGR03534 157 LIVSNPPYIPEA 168 (251)
T ss_pred EEEECCCCCchh
Confidence 999999988765
No 46
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.30 E-value=0.0059 Score=65.69 Aligned_cols=79 Identities=19% Similarity=0.216 Sum_probs=52.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+-+|+|||||+|+|++.|-+.. +-|.++|+++.+....+.+-..++-.+..++.+|..++...-. ....+|
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~-----~~~~~d 364 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW-----EGYKPD 364 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc-----ccCCCC
Confidence 44789999999999999998655 4578999999999988876433222223334454444332211 113678
Q ss_pred EEEecCC
Q 011347 434 FVICQNS 440 (488)
Q Consensus 434 LVIGGpP 440 (488)
+|+==||
T Consensus 365 ~VvvDPP 371 (432)
T COG2265 365 VVVVDPP 371 (432)
T ss_pred EEEECCC
Confidence 8887776
No 47
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.21 E-value=0.0068 Score=63.18 Aligned_cols=81 Identities=21% Similarity=0.238 Sum_probs=45.8
Q ss_pred cccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChh-----hHHHhh---hc
Q 011347 357 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK-----KFESLI---HK 428 (488)
Q Consensus 357 tVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~-----~Ie~l~---~~ 428 (488)
++||||||+|.+++.|-..+ +-|++||+++.+.+..+.+-...+-.+..+...|..++... ++..+. ..
T Consensus 199 ~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~ 275 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLK 275 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GG
T ss_pred cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhh
Confidence 79999999999999997765 45899999999988777765433322333444444444321 111000 01
Q ss_pred cCCccEEEecCC
Q 011347 429 LGSIDFVICQNS 440 (488)
Q Consensus 429 ~g~~DLVIGGpP 440 (488)
...+|+|+==||
T Consensus 276 ~~~~d~vilDPP 287 (352)
T PF05958_consen 276 SFKFDAVILDPP 287 (352)
T ss_dssp CTTESEEEE---
T ss_pred hcCCCEEEEcCC
Confidence 126799987777
No 48
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=96.14 E-value=0.014 Score=62.38 Aligned_cols=86 Identities=14% Similarity=0.289 Sum_probs=59.8
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+-+|||++||.||.+..+..+ |-. -.|+++|+++...+.++.+....+.....+...|.+++.. .. .+.|
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~-----~~--~~~f 308 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQ-GKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTE-----YV--QDTF 308 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhh-----hh--hccC
Confidence 4568999999999998877654 111 2478999999999998887654432222244566655431 11 2469
Q ss_pred cEEEecCCCCCcccc
Q 011347 433 DFVICQNSVPQIPNS 447 (488)
Q Consensus 433 DLVIGGpPCQ~FS~a 447 (488)
|.|+-=+||.++...
T Consensus 309 D~Vl~DaPCsg~G~~ 323 (431)
T PRK14903 309 DRILVDAPCTSLGTA 323 (431)
T ss_pred CEEEECCCCCCCccc
Confidence 999999999888653
No 49
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.13 E-value=0.018 Score=59.09 Aligned_cols=80 Identities=13% Similarity=0.085 Sum_probs=55.3
Q ss_pred CcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCccE
Q 011347 356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDF 434 (488)
Q Consensus 356 itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~DL 434 (488)
.+|||+.||.|.+++.+....-. ..|+++|+++.+.+..+.+....+... ..++.+|+.+. +. .+.||+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~-~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~----l~-----~~~fDl 204 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD-AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA----LP-----GRRYDL 204 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh----CC-----CCCccE
Confidence 58999999999999998775322 247899999999998887654332111 22445665321 10 136999
Q ss_pred EEecCCCCCcc
Q 011347 435 VICQNSVPQIP 445 (488)
Q Consensus 435 VIGGpPCQ~FS 445 (488)
|+.-||+-+..
T Consensus 205 IvsNPPyi~~~ 215 (307)
T PRK11805 205 IVSNPPYVDAE 215 (307)
T ss_pred EEECCCCCCcc
Confidence 99999987654
No 50
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=96.05 E-value=0.019 Score=57.98 Aligned_cols=81 Identities=12% Similarity=0.071 Sum_probs=56.1
Q ss_pred CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCcc
Q 011347 355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
..+|||++||.|.+.+.+.+..-.. .++++|+++.+.+..+.+....+... ..+..+|+.+- + ..+.||
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~-~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~----~-----~~~~fD 191 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEA-EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA----L-----PGRKYD 191 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc----c-----CCCCcc
Confidence 4689999999999999998764222 47899999999988887654332211 12445665321 1 113699
Q ss_pred EEEecCCCCCcc
Q 011347 434 FVICQNSVPQIP 445 (488)
Q Consensus 434 LVIGGpPCQ~FS 445 (488)
+|+.-||+-+.+
T Consensus 192 ~Iv~NPPy~~~~ 203 (284)
T TIGR03533 192 LIVSNPPYVDAE 203 (284)
T ss_pred EEEECCCCCCcc
Confidence 999999997655
No 51
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=95.95 E-value=0.011 Score=61.74 Aligned_cols=83 Identities=8% Similarity=0.061 Sum_probs=54.0
Q ss_pred CcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHH--h--hhc---
Q 011347 356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES--L--IHK--- 428 (488)
Q Consensus 356 itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~--l--~~~--- 428 (488)
-+|||||||.|.+++.|.+.. +-|++||+++.+.+..+.+....+-....++.+|+.++-...... + ...
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL 275 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence 369999999999999988764 248899999999999988765432222234556765543211000 0 000
Q ss_pred -cCCccEEEecCCC
Q 011347 429 -LGSIDFVICQNSV 441 (488)
Q Consensus 429 -~g~~DLVIGGpPC 441 (488)
...+|+|+=-||=
T Consensus 276 ~~~~~d~v~lDPPR 289 (353)
T TIGR02143 276 KSYNCSTIFVDPPR 289 (353)
T ss_pred ccCCCCEEEECCCC
Confidence 0137999999993
No 52
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=95.87 E-value=0.015 Score=61.46 Aligned_cols=76 Identities=21% Similarity=0.227 Sum_probs=51.0
Q ss_pred CCcccccCCCCChhHHHHH-HcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 355 GLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~-~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
+.+|||+|||+|.+++-+. .+|. ..|+++|+|+.+.+..+.+..-++.....+..+|+.++ +...+.||
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~--------l~~~~~fD 127 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL--------LHEERKFD 127 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH--------HhhcCCCC
Confidence 3689999999999998874 4563 35899999999999998876433222211334444322 11124689
Q ss_pred EEEecCC
Q 011347 434 FVICQNS 440 (488)
Q Consensus 434 LVIGGpP 440 (488)
+|+-=||
T Consensus 128 ~V~lDP~ 134 (382)
T PRK04338 128 VVDIDPF 134 (382)
T ss_pred EEEECCC
Confidence 9987765
No 53
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=95.86 E-value=0.011 Score=42.38 Aligned_cols=26 Identities=38% Similarity=0.516 Sum_probs=22.7
Q ss_pred hhhhhHHhcCCCHHHHHHHHHHhCCC
Q 011347 2 EITLQLLEMGFSENQVSLAIEKFGSK 27 (488)
Q Consensus 2 ~k~~~l~~mgf~~~e~~~ai~~~g~~ 27 (488)
+++.+|++|||+++++..|+.+||.+
T Consensus 4 ~~v~~L~~mGf~~~~~~~AL~~~~~n 29 (37)
T PF00627_consen 4 EKVQQLMEMGFSREQAREALRACNGN 29 (37)
T ss_dssp HHHHHHHHHTS-HHHHHHHHHHTTTS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 46789999999999999999999984
No 54
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=95.75 E-value=0.014 Score=41.41 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=28.9
Q ss_pred hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhh
Q 011347 2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIF 38 (488)
Q Consensus 2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~ 38 (488)
+++..|++|||+++++..|+.+|+-| ++.-++.|+
T Consensus 3 ~~v~~L~~mGf~~~~~~~AL~~~~~d--~~~A~~~L~ 37 (38)
T cd00194 3 EKLEQLLEMGFSREEARKALRATNNN--VERAVEWLL 37 (38)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHh
Confidence 45689999999999999999999985 555566654
No 55
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=95.74 E-value=0.0082 Score=60.72 Aligned_cols=51 Identities=16% Similarity=0.372 Sum_probs=47.3
Q ss_pred ccCCCChhhHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcchhhhccc
Q 011347 298 KLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL 348 (488)
Q Consensus 298 ~~~ple~~E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti~~~lsvL 348 (488)
+|+=++|.|+-|++|||.++-.-.+.+...||++||||.+|.+++++.+.|
T Consensus 286 ~LRYFTprEvArLmgFPe~fefp~~~T~kq~YRLLGNSiNVkVV~~LIklL 336 (338)
T KOG0919|consen 286 RLRYFTPREVARLMGFPENFEFPPETTNKQKYRLLGNSINVKVVGELIKLL 336 (338)
T ss_pred HhhccCHHHHHHHcCCCcccCCCcchhHHHHHHHhcCcccceeHHHHHHHh
Confidence 678899999999999999999888999999999999999999999988765
No 56
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=95.73 E-value=0.038 Score=56.62 Aligned_cols=83 Identities=23% Similarity=0.295 Sum_probs=54.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC--CCcceeccccccChhhHHHhhhccCC
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~--g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
++-+||+|||=.||+++..-..|- +-|++||.++.+.+..+.++.-++.. ...++..|+-+. +.. +.+.+.
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~----l~~-~~~~~~ 195 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKF----LKR-LKKGGR 195 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHH----HHH-HHHTT-
T ss_pred CCCceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH----HHH-HhcCCC
Confidence 457999999999999999888995 34789999999999888877533222 112344565432 221 123478
Q ss_pred ccEEEecCCCCCcc
Q 011347 432 IDFVICQNSVPQIP 445 (488)
Q Consensus 432 ~DLVIGGpPCQ~FS 445 (488)
+|+||-=|| .|+
T Consensus 196 fD~IIlDPP--sF~ 207 (286)
T PF10672_consen 196 FDLIILDPP--SFA 207 (286)
T ss_dssp EEEEEE--S--SEE
T ss_pred CCEEEECCC--CCC
Confidence 999999999 665
No 57
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.66 E-value=0.012 Score=63.97 Aligned_cols=88 Identities=11% Similarity=0.046 Sum_probs=52.9
Q ss_pred CCCcccccCCCCChhHHHHHHcC--------CeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHh
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLG--------IKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL 425 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aG--------i~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l 425 (488)
...+|+|..||.|+|-+++-... +. ..+.++|||+.+....+......+..+..+..+|.-.-. ....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~-~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~---~~~~ 106 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVE-LNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYV---LLNI 106 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccce-eeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccc---cccc
Confidence 45789999999999998875321 22 357899999999887776554332111112222211100 0000
Q ss_pred hhccCCccEEEecCCCCCcc
Q 011347 426 IHKLGSIDFVICQNSVPQIP 445 (488)
Q Consensus 426 ~~~~g~~DLVIGGpPCQ~FS 445 (488)
....+.||+|||=||=-...
T Consensus 107 ~~~~~~fD~IIgNPPy~~~k 126 (524)
T TIGR02987 107 ESYLDLFDIVITNPPYGRLK 126 (524)
T ss_pred ccccCcccEEEeCCCccccC
Confidence 01236899999999977653
No 58
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=95.65 E-value=0.023 Score=56.44 Aligned_cols=74 Identities=15% Similarity=0.068 Sum_probs=54.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+-+|||+-||.|.++..+.+.+. -++++|+|+.....++..... .....++.+|+.++.- ..+|
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~----------~~~d 93 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDL----------PEFN 93 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCc----------hhce
Confidence 456899999999999999998874 378999999988887764421 1223356788876642 2469
Q ss_pred EEEecCCCC
Q 011347 434 FVICQNSVP 442 (488)
Q Consensus 434 LVIGGpPCQ 442 (488)
+|+|-.|=+
T Consensus 94 ~Vv~NlPy~ 102 (258)
T PRK14896 94 KVVSNLPYQ 102 (258)
T ss_pred EEEEcCCcc
Confidence 999987744
No 59
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=95.58 E-value=0.059 Score=57.59 Aligned_cols=106 Identities=20% Similarity=0.230 Sum_probs=72.9
Q ss_pred CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC--CcceeccccccChhhHHHhhhccCCc
Q 011347 355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g--~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
|-+||+|||=.|||++..-..|-. -|++||++..+....+.|..-++..+ ..++.+|+-+. |+....+-..|
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~--~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~----l~~~~~~g~~f 291 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGAS--EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKW----LRKAERRGEKF 291 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCC--ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHH----HHHHHhcCCcc
Confidence 778999999999999999999973 47899999999988888765333222 12444555432 22222222489
Q ss_pred cEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 011347 433 DFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 486 (488)
Q Consensus 433 DLVIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~ 486 (488)
||||-=|| .|+.+. + +. .+++..|.+++.....+
T Consensus 292 DlIilDPP--sF~r~k--------------~---~~-~~~~rdy~~l~~~~~~i 325 (393)
T COG1092 292 DLIILDPP--SFARSK--------------K---QE-FSAQRDYKDLNDLALRL 325 (393)
T ss_pred cEEEECCc--ccccCc--------------c---cc-hhHHHHHHHHHHHHHHH
Confidence 99999999 566321 1 12 66788888888776544
No 60
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.50 E-value=0.048 Score=52.13 Aligned_cols=82 Identities=18% Similarity=0.208 Sum_probs=53.2
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+.+|||+.||.|.+...+.+. |-. ..++++|+++...+..+......+.....++.+|+.++.. ..+.+
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~f 115 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPE-GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPF--------DDNSF 115 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCC--------CCCCc
Confidence 4678999999999998877654 322 2478999999887777654432222222245567665431 12479
Q ss_pred cEEEecCCCCCc
Q 011347 433 DFVICQNSVPQI 444 (488)
Q Consensus 433 DLVIGGpPCQ~F 444 (488)
|+|+-+...+.+
T Consensus 116 D~V~~~~~l~~~ 127 (231)
T TIGR02752 116 DYVTIGFGLRNV 127 (231)
T ss_pred cEEEEecccccC
Confidence 999987665544
No 61
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=95.45 E-value=0.035 Score=55.77 Aligned_cols=80 Identities=14% Similarity=0.074 Sum_probs=55.7
Q ss_pred CcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCccE
Q 011347 356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDF 434 (488)
Q Consensus 356 itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~DL 434 (488)
.+|||++||.|.+.+.+....-.. .++++|+++.+.+..+.+....+... ..++.+|+.+- ++ ...||+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~-~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~----~~-----~~~fDl 185 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNA-EVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP----LA-----GQKIDI 185 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc----Cc-----CCCccE
Confidence 589999999999999888764222 47899999999988887654332211 22444665321 11 126999
Q ss_pred EEecCCCCCcc
Q 011347 435 VICQNSVPQIP 445 (488)
Q Consensus 435 VIGGpPCQ~FS 445 (488)
|+.-||.-+.+
T Consensus 186 IvsNPPyi~~~ 196 (284)
T TIGR00536 186 IVSNPPYIDEE 196 (284)
T ss_pred EEECCCCCCcc
Confidence 99999998765
No 62
>PRK14968 putative methyltransferase; Provisional
Probab=95.35 E-value=0.06 Score=49.19 Aligned_cols=78 Identities=15% Similarity=0.108 Sum_probs=52.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC--CcceeccccccChhhHHHhhhccCC
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g--~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
.+-+|||+.||.|.+...+.+.|. .++++|+++.+....+.+....+... ..+...|..+- +. -+.
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~~-----~~~ 90 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP----FR-----GDK 90 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc----cc-----ccC
Confidence 456899999999999999888864 36789999988777765543222111 22344554321 11 126
Q ss_pred ccEEEecCCCCC
Q 011347 432 IDFVICQNSVPQ 443 (488)
Q Consensus 432 ~DLVIGGpPCQ~ 443 (488)
+|+|+..+|+..
T Consensus 91 ~d~vi~n~p~~~ 102 (188)
T PRK14968 91 FDVILFNPPYLP 102 (188)
T ss_pred ceEEEECCCcCC
Confidence 999999998743
No 63
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=95.32 E-value=0.054 Score=54.28 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=55.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+-+|||+=||.|.++..|.+.|- -|+++|+|+.....++..... ....++.+|+.++...++ ..|
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~~--------~~~ 107 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSEL--------QPL 107 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHHc--------Ccc
Confidence 557899999999999999988874 378999999998888764321 233467789888764321 158
Q ss_pred EEEecCC
Q 011347 434 FVICQNS 440 (488)
Q Consensus 434 LVIGGpP 440 (488)
+|+|-+|
T Consensus 108 ~vv~NlP 114 (272)
T PRK00274 108 KVVANLP 114 (272)
T ss_pred eEEEeCC
Confidence 8999888
No 64
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=95.30 E-value=0.061 Score=45.09 Aligned_cols=74 Identities=23% Similarity=0.342 Sum_probs=52.2
Q ss_pred CCcccccCCCCChhHHHHHH--cCCeeeeEEEeeCCHHHHHHHHHHhhhcC-CCCCcceeccccccChhhHHHhhhccCC
Q 011347 355 GLTMLSVFSGIGGAEVTLHR--LGIKLKGVISIETSETNRRILKRWWESSG-QTGELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~--aGi~~k~vvsVEid~~a~~t~~~~~~~~n-~~g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
+-+||||=||.|.+...+.+ .|.+ ++++|+++...+..+....... .....++.+|+ ....+ ..++
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~-------~~~~ 70 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGAR---VVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPD-------FLEP 70 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSE---EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTT-------TSSC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCE---EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcc-------cCCC
Confidence 46799999999999999998 7764 6899999999988887652222 12233566777 22211 2257
Q ss_pred ccEEEecC
Q 011347 432 IDFVICQN 439 (488)
Q Consensus 432 ~DLVIGGp 439 (488)
+|+|+...
T Consensus 71 ~D~v~~~~ 78 (112)
T PF12847_consen 71 FDLVICSG 78 (112)
T ss_dssp EEEEEECS
T ss_pred CCEEEECC
Confidence 99998655
No 65
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=95.27 E-value=0.052 Score=57.74 Aligned_cols=85 Identities=13% Similarity=0.131 Sum_probs=57.8
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcc--eeccccccChhhHHHhhhccC
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELV--QIEDIQALTTKKFESLIHKLG 430 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv--~~~DI~~L~~~~Ie~l~~~~g 430 (488)
.+-+|||++||.||.+..+.++ + . -.|+++|+++...+..+.+....+.. ..+ ..+|..++.. . ...+
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~-~-~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~~~~~d~~~~~~--~----~~~~ 308 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAP-Q-AQVVALDIHEHRLKRVYENLKRLGLT-IKAETKDGDGRGPSQ--W----AENE 308 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcC-C-CeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeccccccccc--c----cccc
Confidence 4578999999999999887663 3 2 24789999999988888766543221 112 2244432221 0 0125
Q ss_pred CccEEEecCCCCCcccc
Q 011347 431 SIDFVICQNSVPQIPNS 447 (488)
Q Consensus 431 ~~DLVIGGpPCQ~FS~a 447 (488)
.||.|+-.+||.++..-
T Consensus 309 ~fD~VllDaPcSg~G~~ 325 (426)
T TIGR00563 309 QFDRILLDAPCSATGVI 325 (426)
T ss_pred ccCEEEEcCCCCCCccc
Confidence 79999999999998754
No 66
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=95.19 E-value=0.032 Score=56.25 Aligned_cols=101 Identities=19% Similarity=0.245 Sum_probs=61.4
Q ss_pred hhhcccCcchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-Cccee
Q 011347 333 RHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQI 411 (488)
Q Consensus 333 gnsfqvdti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~ 411 (488)
+.++++|.+ +|+-.-.. +..-+||||-||+|.+.+.+.+-==+. -+++||+++.+..-.+++-..+.... ..+++
T Consensus 26 ~~~~~~Dai--LL~~~~~~-~~~~~IlDlGaG~G~l~L~la~r~~~a-~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~ 101 (248)
T COG4123 26 GFRYGTDAI--LLAAFAPV-PKKGRILDLGAGNGALGLLLAQRTEKA-KIVGVEIQEEAAEMAQRNVALNPLEERIQVIE 101 (248)
T ss_pred ccccccHHH--HHHhhccc-ccCCeEEEecCCcCHHHHHHhccCCCC-cEEEEEeCHHHHHHHHHHHHhCcchhceeEeh
Confidence 456667743 22222221 236789999999999999887651122 36789999998776665432211111 12455
Q ss_pred ccccccChhhHHHhhhccCCccEEEecCCCCC
Q 011347 412 EDIQALTTKKFESLIHKLGSIDFVICQNSVPQ 443 (488)
Q Consensus 412 ~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ~ 443 (488)
+||.++.... .+..||+||.-||=-.
T Consensus 102 ~Di~~~~~~~------~~~~fD~Ii~NPPyf~ 127 (248)
T COG4123 102 ADIKEFLKAL------VFASFDLIICNPPYFK 127 (248)
T ss_pred hhHHHhhhcc------cccccCEEEeCCCCCC
Confidence 6776554321 2357999999998543
No 67
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=95.14 E-value=0.044 Score=54.07 Aligned_cols=75 Identities=17% Similarity=0.112 Sum_probs=54.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+-+|||+.||.|.++..|.+.+- .++++|+|+.....++..+.. ..+..++.+|+.++.... +...+
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~~-------~d~~~ 96 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLPD-------FPKQL 96 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChhH-------cCCcc
Confidence 457899999999999999999884 378999999998888765421 122335678887765321 11125
Q ss_pred EEEecCC
Q 011347 434 FVICQNS 440 (488)
Q Consensus 434 LVIGGpP 440 (488)
+|+|..|
T Consensus 97 ~vvsNlP 103 (253)
T TIGR00755 97 KVVSNLP 103 (253)
T ss_pred eEEEcCC
Confidence 8888887
No 68
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=95.08 E-value=0.079 Score=50.86 Aligned_cols=83 Identities=20% Similarity=0.169 Sum_probs=55.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+-+|||+.||.|.++..|.+..-+--.|+++|+++...+..+.+....+.....+..+|..+.-. ..+.||
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~--------~~~~fD 148 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE--------PLAPYD 148 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc--------ccCCCC
Confidence 567899999999999988876532111378999999988877766554332223345566654211 125799
Q ss_pred EEEecCCCCCc
Q 011347 434 FVICQNSVPQI 444 (488)
Q Consensus 434 LVIGGpPCQ~F 444 (488)
+|+-.+++...
T Consensus 149 ~Ii~~~~~~~~ 159 (215)
T TIGR00080 149 RIYVTAAGPKI 159 (215)
T ss_pred EEEEcCCcccc
Confidence 99877766544
No 69
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=95.05 E-value=0.061 Score=56.15 Aligned_cols=98 Identities=21% Similarity=0.237 Sum_probs=60.4
Q ss_pred HhhhhhcccCcc----hhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC
Q 011347 330 ESLRHCFQTDTL----GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT 405 (488)
Q Consensus 330 k~Lgnsfqvdti----~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~ 405 (488)
..+...|+.+.+ ..+++.|.... .-+||||.||.|.++..+.+.+=.. .|.++|+++.+.+..+.+....+..
T Consensus 170 ~~~pgvFs~~~lD~gt~lLl~~l~~~~--~g~VLDlGCG~G~ls~~la~~~p~~-~v~~vDis~~Al~~A~~nl~~n~l~ 246 (342)
T PRK09489 170 KTLPGVFSRDGLDVGSQLLLSTLTPHT--KGKVLDVGCGAGVLSAVLARHSPKI-RLTLSDVSAAALESSRATLAANGLE 246 (342)
T ss_pred EeCCCCCCCCCCCHHHHHHHHhccccC--CCeEEEeccCcCHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHHHHHcCCC
Confidence 444455544443 33355444321 2379999999999998888764222 3789999999988877665433222
Q ss_pred CCcceeccccccChhhHHHhhhccCCccEEEecCCC
Q 011347 406 GELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV 441 (488)
Q Consensus 406 g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPC 441 (488)
. .+...|+.+ .+ .+.||+|+..||=
T Consensus 247 ~-~~~~~D~~~----~~------~~~fDlIvsNPPF 271 (342)
T PRK09489 247 G-EVFASNVFS----DI------KGRFDMIISNPPF 271 (342)
T ss_pred C-EEEEccccc----cc------CCCccEEEECCCc
Confidence 2 233345422 11 2579999998874
No 70
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=95.01 E-value=0.058 Score=51.14 Aligned_cols=75 Identities=12% Similarity=0.125 Sum_probs=51.0
Q ss_pred CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347 355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 434 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL 434 (488)
+.+|||+-||.|-+++.+..++-. ..|+++|+++......+.+..+.+.....++.+|+.++.. .+.+|+
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~-~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~---------~~~fD~ 112 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPE-LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH---------EEQFDV 112 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc---------cCCccE
Confidence 678999999999888776655422 2378999999887777766554332223355677766521 257999
Q ss_pred EEecC
Q 011347 435 VICQN 439 (488)
Q Consensus 435 VIGGp 439 (488)
|+...
T Consensus 113 I~s~~ 117 (181)
T TIGR00138 113 ITSRA 117 (181)
T ss_pred EEehh
Confidence 98643
No 71
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=94.99 E-value=0.092 Score=44.37 Aligned_cols=76 Identities=20% Similarity=0.187 Sum_probs=48.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+||||.||.|.+..-+-+..=. ..++++|+++.+.+..+.+-...+.....+..+|+...... ..+.+|
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~D 90 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED-------SLPEPD 90 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh-------hcCCCC
Confidence 3568999999999999877664211 34789999999988887655433222222344555432110 124789
Q ss_pred EEEe
Q 011347 434 FVIC 437 (488)
Q Consensus 434 LVIG 437 (488)
+|+-
T Consensus 91 ~v~~ 94 (124)
T TIGR02469 91 RVFI 94 (124)
T ss_pred EEEE
Confidence 8875
No 72
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=94.92 E-value=0.086 Score=50.37 Aligned_cols=43 Identities=21% Similarity=0.229 Sum_probs=36.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHh
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 399 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~ 399 (488)
.+.+|||+.||.|.+...+...+. .++++|+++.+....+...
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~ 97 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRA 97 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHH
Confidence 467899999999999999988775 3689999999887776644
No 73
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=94.89 E-value=0.044 Score=57.99 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=35.4
Q ss_pred CCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHhh
Q 011347 355 GLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWE 400 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~~ 400 (488)
+++|||+|||+|-..+-+-.- |. +.|+++|+|+.|.+.++.+..
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga--~~Vv~nD~n~~Av~~i~~N~~ 90 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGV--REVFANDINPKAVESIKNNVE 90 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCC--CEEEEEeCCHHHHHHHHHHHH
Confidence 589999999999776554433 65 458999999999999988764
No 74
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=94.84 E-value=0.043 Score=55.66 Aligned_cols=78 Identities=15% Similarity=0.245 Sum_probs=56.7
Q ss_pred cccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEEE
Q 011347 357 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI 436 (488)
Q Consensus 357 tVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVI 436 (488)
+||||.||.|-+.+++...+-. ..|+++|||+.|.++-+.+...++- .++..+.. ++-+ .-.+.||+|+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l-------~~~~~~~~-dlf~--~~~~~fDlIV 181 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGL-------VRVLVVQS-DLFE--PLRGKFDLIV 181 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCC-------ccEEEEee-eccc--ccCCceeEEE
Confidence 7999999999999999988754 3588999999999988877654321 22333333 2211 1125899999
Q ss_pred ecCCCCCcc
Q 011347 437 CQNSVPQIP 445 (488)
Q Consensus 437 GGpPCQ~FS 445 (488)
.=||=-+-+
T Consensus 182 sNPPYip~~ 190 (280)
T COG2890 182 SNPPYIPAE 190 (280)
T ss_pred eCCCCCCCc
Confidence 999987776
No 75
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=94.74 E-value=0.028 Score=56.58 Aligned_cols=108 Identities=19% Similarity=0.137 Sum_probs=55.1
Q ss_pred HhhhhhcccCcchhhhccccccCCCCCcccccCCCCChhHHHHHHc------CCeeeeEEEeeCCHHHHHHHHHHhhhcC
Q 011347 330 ESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL------GIKLKGVISIETSETNRRILKRWWESSG 403 (488)
Q Consensus 330 k~Lgnsfqvdti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~a------Gi~~k~vvsVEid~~a~~t~~~~~~~~n 403 (488)
|.+|..|....+..++.-+-.. ..+.+|+|.+||.|||-+++.+. -+.-..++++|+++.+....+.+..-++
T Consensus 23 k~~G~~~TP~~i~~l~~~~~~~-~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~ 101 (311)
T PF02384_consen 23 KKLGQFYTPREIVDLMVKLLNP-KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG 101 (311)
T ss_dssp TSCGGC---HHHHHHHHHHHTT--TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT
T ss_pred cccceeehHHHHHHHHHhhhhc-cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc
Confidence 4556667666666665444432 24567999999999998887651 0112357899999998876654322111
Q ss_pred CCCC--cceeccccccChhhHHHhhhccCCccEEEecCCCCCc
Q 011347 404 QTGE--LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQI 444 (488)
Q Consensus 404 ~~g~--lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ~F 444 (488)
.... .+..+|.-. .... .....+|+|+|-||=-..
T Consensus 102 ~~~~~~~i~~~d~l~--~~~~----~~~~~~D~ii~NPPf~~~ 138 (311)
T PF02384_consen 102 IDNSNINIIQGDSLE--NDKF----IKNQKFDVIIGNPPFGSK 138 (311)
T ss_dssp HHCBGCEEEES-TTT--SHSC----TST--EEEEEEE--CTCE
T ss_pred ccccccccccccccc--cccc----ccccccccccCCCCcccc
Confidence 1011 123333211 1100 013589999999986655
No 76
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.62 E-value=0.053 Score=51.47 Aligned_cols=76 Identities=17% Similarity=0.111 Sum_probs=55.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+++||-||||=++.|+...+- +.|+++|||+.|-+++.++-+...- ...+...||.++.. ..|-||
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~--e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle~--------~~g~fD 116 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKN--ESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLEL--------KGGIFD 116 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCC--ceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchhc--------cCCeEe
Confidence 578899999999999999999886 5689999999999998775433210 11234456655432 236789
Q ss_pred EEEecCC
Q 011347 434 FVICQNS 440 (488)
Q Consensus 434 LVIGGpP 440 (488)
..+=-||
T Consensus 117 taviNpp 123 (185)
T KOG3420|consen 117 TAVINPP 123 (185)
T ss_pred eEEecCC
Confidence 8887776
No 77
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=94.56 E-value=0.082 Score=53.40 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=38.9
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhh
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 400 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~ 400 (488)
..+.+|||+.||.|.+++++.++|. ..|+++|+|+.+.+..+.+..
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~ 203 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAE 203 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHH
Confidence 3567899999999999999999985 358899999999888877654
No 78
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=94.51 E-value=0.072 Score=50.39 Aligned_cols=80 Identities=19% Similarity=0.170 Sum_probs=46.7
Q ss_pred CCCcccccCCCCChhHH--HHHHcCCe------eeeEEEeeCCHHHHHHHHHHhhhcCCCCC-cceeccccccChhhHHH
Q 011347 354 GGLTMLSVFSGIGGAEV--TLHRLGIK------LKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFES 424 (488)
Q Consensus 354 ~~itVLDLFSGiGGlsl--GL~~aGi~------~k~vvsVEid~~a~~t~~~~~~~~n~~g~-lv~~~DI~~L~~~~Ie~ 424 (488)
.+-.|||-|||.|++-+ ++....+. ...++++|+|+.+.+.-+.+-...+.... .+...|.+++.
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~------ 101 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP------ 101 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG------
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc------
Confidence 46789999999999864 34444432 00167999999998888777654432221 13345666555
Q ss_pred hhhccCCccEEEecCCC
Q 011347 425 LIHKLGSIDFVICQNSV 441 (488)
Q Consensus 425 l~~~~g~~DLVIGGpPC 441 (488)
...+.+|+||.=||=
T Consensus 102 --~~~~~~d~IvtnPPy 116 (179)
T PF01170_consen 102 --LPDGSVDAIVTNPPY 116 (179)
T ss_dssp --GTTSBSCEEEEE--S
T ss_pred --cccCCCCEEEECcch
Confidence 112579999999983
No 79
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=94.27 E-value=0.096 Score=56.51 Aligned_cols=78 Identities=12% Similarity=0.021 Sum_probs=52.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+||||.||.|.+.+.+.+..-. ..+.++|+|+.+.+..+.+....+ ....++.+|+.+.. + ...+.||
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~-a~VtAVDiS~~ALe~AreNa~~~g-~rV~fi~gDl~e~~---l----~~~~~FD 321 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPD-AFVRASDISPPALETARKNAADLG-ARVEFAHGSWFDTD---M----PSEGKWD 321 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcC-CcEEEEEcchhccc---c----ccCCCcc
Confidence 4458999999999999887654211 237899999999998887764332 12224556664321 0 0124699
Q ss_pred EEEecCC
Q 011347 434 FVICQNS 440 (488)
Q Consensus 434 LVIGGpP 440 (488)
+|+.-||
T Consensus 322 LIVSNPP 328 (423)
T PRK14966 322 IIVSNPP 328 (423)
T ss_pred EEEECCC
Confidence 9998887
No 80
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=94.23 E-value=0.17 Score=48.22 Aligned_cols=73 Identities=19% Similarity=0.196 Sum_probs=48.3
Q ss_pred CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347 355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 434 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL 434 (488)
+.+|||+=||.|..+.-|.+.|.+ |.++|+++.+.+..+..-...+..+..+...|+.++.. .+.||+
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~~---V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~~~fD~ 98 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGFD---VTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF---------DGEYDF 98 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc---------CCCcCE
Confidence 468999999999999999998974 67899999988777654333222222233345543321 135787
Q ss_pred EEecC
Q 011347 435 VICQN 439 (488)
Q Consensus 435 VIGGp 439 (488)
|+...
T Consensus 99 I~~~~ 103 (197)
T PRK11207 99 ILSTV 103 (197)
T ss_pred EEEec
Confidence 77543
No 81
>PRK07402 precorrin-6B methylase; Provisional
Probab=94.13 E-value=0.19 Score=47.39 Aligned_cols=47 Identities=23% Similarity=0.244 Sum_probs=36.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhh
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 401 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~ 401 (488)
.+-+|||++||.|.++..+.+++-. ..|+++|+++...+..+.+...
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~-~~V~~vD~s~~~~~~a~~n~~~ 86 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPK-GRVIAIERDEEVVNLIRRNCDR 86 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHH
Confidence 4568999999999999888665322 2478999999998888876543
No 82
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=94.10 E-value=0.17 Score=47.21 Aligned_cols=46 Identities=17% Similarity=0.160 Sum_probs=36.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhh
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 400 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~ 400 (488)
.+.+|||+.||.|.+.+.+.+.+-. .-+.++|+++.+.+..+.+..
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~n~~ 76 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPS-LQVTAIERNPDALRLIKENRQ 76 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHH
Confidence 5678999999999999988776422 247899999998888876544
No 83
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=94.09 E-value=0.11 Score=53.35 Aligned_cols=98 Identities=17% Similarity=0.107 Sum_probs=64.3
Q ss_pred Hhhhhhc--ccCcchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcC-CCC
Q 011347 330 ESLRHCF--QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-QTG 406 (488)
Q Consensus 330 k~Lgnsf--qvdti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n-~~g 406 (488)
|.||-.| +...+..++..+. ...+-+|||+-||.|.++..|...+- -|+++|+|+.....++......+ ...
T Consensus 12 k~~GQnFL~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~ 86 (294)
T PTZ00338 12 KKFGQHILKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASK 86 (294)
T ss_pred CCCCccccCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCc
Confidence 4556666 2334444444332 23456899999999999998887764 37899999999988887554322 122
Q ss_pred CcceeccccccChhhHHHhhhccCCccEEEecCCCC
Q 011347 407 ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP 442 (488)
Q Consensus 407 ~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ 442 (488)
..++.+|+.+++. ..+|+|++-.|=+
T Consensus 87 v~ii~~Dal~~~~----------~~~d~VvaNlPY~ 112 (294)
T PTZ00338 87 LEVIEGDALKTEF----------PYFDVCVANVPYQ 112 (294)
T ss_pred EEEEECCHhhhcc----------cccCEEEecCCcc
Confidence 3356778765431 3578999877654
No 84
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=94.08 E-value=0.11 Score=53.94 Aligned_cols=42 Identities=24% Similarity=0.393 Sum_probs=36.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHH
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 398 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~ 398 (488)
.+.+|||+-||.|.++..|.+.|.+ |+++|+++...+..+.+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~---V~GID~s~~~i~~Ar~~ 172 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGAT---VTGVDAVDKNVKIARLH 172 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCE---EEEEeCCHHHHHHHHHH
Confidence 4678999999999999999998864 68999999988877754
No 85
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=94.01 E-value=0.17 Score=48.14 Aligned_cols=80 Identities=23% Similarity=0.175 Sum_probs=54.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||+-||.|.++..|.+++- .++++|+++......+.++...+.....+..+|..+.- ...+.||
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~fD 146 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW--------PAYAPFD 146 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC--------CcCCCcC
Confidence 568999999999999887777752 37899999998888877765443222224445543211 1125799
Q ss_pred EEEecCCCCCc
Q 011347 434 FVICQNSVPQI 444 (488)
Q Consensus 434 LVIGGpPCQ~F 444 (488)
+|+-..+|..+
T Consensus 147 ~I~~~~~~~~~ 157 (212)
T PRK00312 147 RILVTAAAPEI 157 (212)
T ss_pred EEEEccCchhh
Confidence 98887776644
No 86
>KOG2730 consensus Methylase [General function prediction only]
Probab=93.81 E-value=0.057 Score=54.15 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=62.9
Q ss_pred ccCcchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-Ccceecccc
Q 011347 337 QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQ 415 (488)
Q Consensus 337 qvdti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~ 415 (488)
++.-++-|+.--+.-..+.-.+||-|||+||-..=|-.-|-. |.++|||+....--+.+-+-..-+. ..++++|+-
T Consensus 77 Tpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~---VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~l 153 (263)
T KOG2730|consen 77 TPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPY---VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFL 153 (263)
T ss_pred ccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCe---EEEEeccHHHHHHHhccceeecCCceeEEEechHH
Confidence 445556665544443436677999999999999988888853 6899999997665543222111111 114556665
Q ss_pred ccChhhHHHhhhccCCccEEEecCCCCCcccc
Q 011347 416 ALTTKKFESLIHKLGSIDFVICQNSVPQIPNS 447 (488)
Q Consensus 416 ~L~~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~a 447 (488)
++-. .+. + ...-+|+|.+.||=-+-|..
T Consensus 154 d~~~-~lq-~--~K~~~~~vf~sppwggp~y~ 181 (263)
T KOG2730|consen 154 DLAS-KLK-A--DKIKYDCVFLSPPWGGPSYL 181 (263)
T ss_pred HHHH-HHh-h--hhheeeeeecCCCCCCcchh
Confidence 4321 111 1 11237899998887766643
No 87
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=93.77 E-value=0.11 Score=53.53 Aligned_cols=83 Identities=19% Similarity=0.261 Sum_probs=53.9
Q ss_pred CcccccCCCCChhHHHH-HHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347 356 LTMLSVFSGIGGAEVTL-HRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 434 (488)
Q Consensus 356 itVLDLFSGiGGlslGL-~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL 434 (488)
..++|++||.|.+++++ |.++ +. .+.|+|.++.|......|-....-.|.+-+..-|.+ .+.........|..|+
T Consensus 150 ~~ildlgtGSGaIslsll~~L~-~~-~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me--~d~~~~~~l~~~~~dl 225 (328)
T KOG2904|consen 150 THILDLGTGSGAISLSLLHGLP-QC-TVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIME--SDASDEHPLLEGKIDL 225 (328)
T ss_pred ceEEEecCCccHHHHHHHhcCC-Cc-eEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccc--cccccccccccCceeE
Confidence 36899999999999996 5677 43 678999999998877665443322233322222222 2222222224589999
Q ss_pred EEecCCCC
Q 011347 435 VICQNSVP 442 (488)
Q Consensus 435 VIGGpPCQ 442 (488)
+++-||--
T Consensus 226 lvsNPPYI 233 (328)
T KOG2904|consen 226 LVSNPPYI 233 (328)
T ss_pred EecCCCcc
Confidence 99999853
No 88
>PLN02244 tocopherol O-methyltransferase
Probab=93.58 E-value=0.26 Score=51.04 Aligned_cols=74 Identities=23% Similarity=0.217 Sum_probs=48.9
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLG 430 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g 430 (488)
..+.+|||+-||.|++...|.+. |.+ |+++|+++...+..+......+. ....++.+|+.++.- .-+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~---v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~--------~~~ 185 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGAN---VKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF--------EDG 185 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCE---EEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC--------CCC
Confidence 35678999999999999888764 653 67899999977665543322211 112345577765531 125
Q ss_pred CccEEEe
Q 011347 431 SIDFVIC 437 (488)
Q Consensus 431 ~~DLVIG 437 (488)
.||+|+.
T Consensus 186 ~FD~V~s 192 (340)
T PLN02244 186 QFDLVWS 192 (340)
T ss_pred CccEEEE
Confidence 7999985
No 89
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=93.56 E-value=0.16 Score=54.02 Aligned_cols=75 Identities=13% Similarity=0.088 Sum_probs=50.5
Q ss_pred CcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCC----cceeccccccChhhHHHhhhccCC
Q 011347 356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE----LVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 356 itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~----lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
-+||||.||.|-+.+.+.+.+=.. -|.++|+++.+....+.++... .... .+...|+.+ .+ ..+.
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~-~V~~vD~S~~Av~~A~~N~~~n-~~~~~~~v~~~~~D~l~----~~-----~~~~ 298 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQA-KVVFVDESPMAVASSRLNVETN-MPEALDRCEFMINNALS----GV-----EPFR 298 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHHHHHc-CcccCceEEEEEccccc----cC-----CCCC
Confidence 389999999999999888764222 3788999999998888777532 2211 122334321 01 1147
Q ss_pred ccEEEecCCC
Q 011347 432 IDFVICQNSV 441 (488)
Q Consensus 432 ~DLVIGGpPC 441 (488)
||+|+.-||-
T Consensus 299 fDlIlsNPPf 308 (378)
T PRK15001 299 FNAVLCNPPF 308 (378)
T ss_pred EEEEEECcCc
Confidence 9999998885
No 90
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=93.50 E-value=0.13 Score=50.64 Aligned_cols=51 Identities=24% Similarity=0.301 Sum_probs=40.8
Q ss_pred ccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhh
Q 011347 348 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 400 (488)
Q Consensus 348 LK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~ 400 (488)
|..+...+.+|||+-||.|.+.+.+.+.|.. .|+++|+|+.+.+..+.+..
T Consensus 113 l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~ 163 (250)
T PRK00517 113 LEKLVLPGKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAE 163 (250)
T ss_pred HHhhcCCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHH
Confidence 3333446789999999999999999999864 37899999999887776543
No 91
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=93.50 E-value=0.23 Score=47.12 Aligned_cols=79 Identities=15% Similarity=0.173 Sum_probs=47.7
Q ss_pred CCCCcccccCCCCChhHHHHHH-cCCeeeeEEEeeCCHHHHHHHHHHhhhcC-CCCCcceeccccccChhhHHHhhhccC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSG-QTGELVQIEDIQALTTKKFESLIHKLG 430 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~-aGi~~k~vvsVEid~~a~~t~~~~~~~~n-~~g~lv~~~DI~~L~~~~Ie~l~~~~g 430 (488)
..+-+|||+.||.|.+++.+-+ +|-. .-|+++|+++.+.+..+.+-...+ .....+..+|..++ +.. ..+
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~-~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~----l~~---~~~ 110 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGET-GKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI----LFT---INE 110 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh----Hhh---cCC
Confidence 3567899999999999887754 3422 237899999998877765443221 11112233444321 111 125
Q ss_pred CccEEEecC
Q 011347 431 SIDFVICQN 439 (488)
Q Consensus 431 ~~DLVIGGp 439 (488)
.+|+|+-|.
T Consensus 111 ~~D~V~~~~ 119 (198)
T PRK00377 111 KFDRIFIGG 119 (198)
T ss_pred CCCEEEECC
Confidence 799988654
No 92
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=93.41 E-value=0.21 Score=47.88 Aligned_cols=79 Identities=19% Similarity=0.183 Sum_probs=52.8
Q ss_pred ccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhcc
Q 011347 350 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 429 (488)
Q Consensus 350 ~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~ 429 (488)
++++.+.+|||+=||.|.+++.+.++.-. ..|+++|+++......+.+....+.....++.+|+.++.. .
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~-~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~---------~ 110 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARPE-LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ---------E 110 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC---------C
Confidence 33445789999999999988877653212 2478999999888777766554432223345566665432 2
Q ss_pred CCccEEEec
Q 011347 430 GSIDFVICQ 438 (488)
Q Consensus 430 g~~DLVIGG 438 (488)
+.+|+|+..
T Consensus 111 ~~fDlV~~~ 119 (187)
T PRK00107 111 EKFDVVTSR 119 (187)
T ss_pred CCccEEEEc
Confidence 479999963
No 93
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=93.31 E-value=0.19 Score=55.04 Aligned_cols=79 Identities=15% Similarity=0.101 Sum_probs=51.8
Q ss_pred CCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCC
Q 011347 355 GLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
+.+|||+.||.|.+.+++... +. .++++|+|+.+.+..+.+....+... ..+..+|+.+ .+ ..+.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~---~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-------~~--~~~~ 206 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNA---NVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-------NI--EKQK 206 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCC---eEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-------hC--cCCC
Confidence 468999999999999887543 33 37899999999988887654332111 1133444421 11 1247
Q ss_pred ccEEEecCCCCCcc
Q 011347 432 IDFVICQNSVPQIP 445 (488)
Q Consensus 432 ~DLVIGGpPCQ~FS 445 (488)
||+|+..||=-+.+
T Consensus 207 fDlIvsNPPYi~~~ 220 (506)
T PRK01544 207 FDFIVSNPPYISHS 220 (506)
T ss_pred ccEEEECCCCCCch
Confidence 99999999855443
No 94
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=93.30 E-value=0.3 Score=46.36 Aligned_cols=45 Identities=24% Similarity=0.312 Sum_probs=37.5
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhh
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 400 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~ 400 (488)
+.+.+|||+-||.|.+...|.+.|.. +.++|+++......+....
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~---v~~~D~s~~~i~~a~~~~~ 106 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAK---VVASDISPQMVEEARERAP 106 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHH
Confidence 34678999999999999999888853 7899999998887776554
No 95
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=93.16 E-value=0.27 Score=47.05 Aligned_cols=82 Identities=21% Similarity=0.152 Sum_probs=53.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccc-cccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDI-QALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI-~~L~~~~Ie~l~~~~g~~ 432 (488)
.+.+|||+-||.|.+...+.+.. +-..+++||+++......+.+..........++.+|+ ..+. ... ..+.|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~-----~~~-~~~~~ 112 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL-----DMF-PDGSL 112 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH-----HHc-Ccccc
Confidence 45789999999999999886642 2234889999999988887765433222223455666 3221 111 12579
Q ss_pred cEEEecCCCC
Q 011347 433 DFVICQNSVP 442 (488)
Q Consensus 433 DLVIGGpPCQ 442 (488)
|+|+--+|.+
T Consensus 113 D~V~~~~~~p 122 (202)
T PRK00121 113 DRIYLNFPDP 122 (202)
T ss_pred ceEEEECCCC
Confidence 9998765543
No 96
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=93.11 E-value=0.24 Score=48.71 Aligned_cols=78 Identities=21% Similarity=0.221 Sum_probs=53.3
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccCC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
+.+.+|||+=||.|.++..|.+.|.+ |+++|+++...+..+......+.. ...++.+|+.++... ..+.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~~---v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~-------~~~~ 112 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGHQ---VILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH-------LETP 112 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh-------cCCC
Confidence 45679999999999999999999864 678999999888777654322211 112455666655321 1247
Q ss_pred ccEEEecCC
Q 011347 432 IDFVICQNS 440 (488)
Q Consensus 432 ~DLVIGGpP 440 (488)
||+|+....
T Consensus 113 fD~V~~~~v 121 (255)
T PRK11036 113 VDLILFHAV 121 (255)
T ss_pred CCEEEehhH
Confidence 898886544
No 97
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=92.96 E-value=0.26 Score=51.13 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=35.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHH
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 398 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~ 398 (488)
.+.+|||+-||.|.+...|.+.|.+ |.++|+++...+..+..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~---V~gvD~S~~ml~~A~~~ 185 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAI---VSASDISAAMVAEAERR 185 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCE---EEEEECCHHHHHHHHHH
Confidence 4679999999999999999999864 68899999987766653
No 98
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=92.55 E-value=0.26 Score=51.13 Aligned_cols=57 Identities=21% Similarity=0.292 Sum_probs=47.2
Q ss_pred hhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhh
Q 011347 342 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 400 (488)
Q Consensus 342 ~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~ 400 (488)
..=|.-|..+-.++.+|||+=||.|=+++|..++|- +-++++|||+.|.++-+.|-.
T Consensus 150 ~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~ 206 (300)
T COG2264 150 SLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENAR 206 (300)
T ss_pred HHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHH
Confidence 333556666666899999999999999999999997 458899999999988877544
No 99
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=92.53 E-value=0.28 Score=49.44 Aligned_cols=72 Identities=33% Similarity=0.355 Sum_probs=51.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+++|||.=||.|=++.-+.++|.. |.++|+++.+..+-+.++..+. .. .|=...+.++ +...-+.||
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~---VtgiD~se~~I~~Ak~ha~e~g---v~---i~y~~~~~ed---l~~~~~~FD 126 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGAS---VTGIDASEKPIEVAKLHALESG---VN---IDYRQATVED---LASAGGQFD 126 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCe---eEEecCChHHHHHHHHhhhhcc---cc---ccchhhhHHH---HHhcCCCcc
Confidence 5789999999999999999999964 7899999999999988765432 11 1222223333 332237899
Q ss_pred EEEe
Q 011347 434 FVIC 437 (488)
Q Consensus 434 LVIG 437 (488)
+|+.
T Consensus 127 vV~c 130 (243)
T COG2227 127 VVTC 130 (243)
T ss_pred EEEE
Confidence 9973
No 100
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=92.37 E-value=0.34 Score=47.24 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=35.4
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHH
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL 395 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~ 395 (488)
+.+-+|||+.||.|--.+-|.+.|++ |++||+++.|++.+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~~---V~gvD~S~~Ai~~~ 72 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGHR---VLGVELSEIAVEQF 72 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCCe---EEEEeCCHHHHHHH
Confidence 45679999999999999999999986 68999999998764
No 101
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=92.17 E-value=0.41 Score=40.10 Aligned_cols=70 Identities=24% Similarity=0.369 Sum_probs=47.5
Q ss_pred ccccCCCCChhHHHHHHc---CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347 358 MLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 434 (488)
Q Consensus 358 VLDLFSGiGGlslGL~~a---Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL 434 (488)
||||=||.|-....|... |.+ .-+.++|+++.+....++.....+. ...++..|++++.. ..+.+|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~-~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~--------~~~~~D~ 70 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPS-SRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPF--------SDGKFDL 70 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHH--------HSSSEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhccc-ceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcc--------cCCCeeE
Confidence 689999999999998876 432 2478999999998888776543222 34467789977532 2358999
Q ss_pred EEe
Q 011347 435 VIC 437 (488)
Q Consensus 435 VIG 437 (488)
|+.
T Consensus 71 v~~ 73 (101)
T PF13649_consen 71 VVC 73 (101)
T ss_dssp EEE
T ss_pred EEE
Confidence 997
No 102
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=91.87 E-value=0.5 Score=44.79 Aligned_cols=83 Identities=19% Similarity=0.117 Sum_probs=53.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
...++||+=||.|.+...+.+..=. ..++++|+++...+..++.....+.....++.+|+.++....+ ..+.+|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~-~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~-----~~~~~d 89 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPD-KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF-----PDGSLS 89 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC-----CCCcee
Confidence 3457999999999999888876422 3578999999877666554443322223345577765432111 114699
Q ss_pred EEEecCCCC
Q 011347 434 FVICQNSVP 442 (488)
Q Consensus 434 LVIGGpPCQ 442 (488)
.|+--+|.-
T Consensus 90 ~v~~~~pdp 98 (194)
T TIGR00091 90 KVFLNFPDP 98 (194)
T ss_pred EEEEECCCc
Confidence 998877644
No 103
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=91.81 E-value=0.79 Score=43.96 Aligned_cols=43 Identities=30% Similarity=0.306 Sum_probs=35.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHh
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 399 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~ 399 (488)
.+.+|||+.||.|.+...+.+.|.+ ++++|+++......+...
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~ 90 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGAD---VTGIDASEENIEVARLHA 90 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCe---EEEEcCCHHHHHHHHHHH
Confidence 4678999999999999999888853 678999999876666543
No 104
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=91.72 E-value=0.26 Score=49.03 Aligned_cols=77 Identities=21% Similarity=0.172 Sum_probs=56.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||+-+|.|-++..|.+.| +-++++|+|+.....++.-.. ......++.+|+-+++..... .....
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~~~~~-----~~~~~ 99 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDLYDLL-----KNQPL 99 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCGGGHC-----SSSEE
T ss_pred CCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccceeeecchhccccHHhh-----cCCce
Confidence 67889999999999999999998 457899999999988886433 122333677999888764321 23556
Q ss_pred EEEecCC
Q 011347 434 FVICQNS 440 (488)
Q Consensus 434 LVIGGpP 440 (488)
+|+|--|
T Consensus 100 ~vv~NlP 106 (262)
T PF00398_consen 100 LVVGNLP 106 (262)
T ss_dssp EEEEEET
T ss_pred EEEEEec
Confidence 7888776
No 105
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=91.71 E-value=0.54 Score=45.38 Aligned_cols=77 Identities=17% Similarity=0.137 Sum_probs=50.1
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
..+.+|||+-||.|.++.-+.++ |- -..|+++|+++...+..+.++...+.....+..+|..+... ..+.
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~-~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~--------~~~~ 145 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGK-SGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE--------ENAP 145 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--------cCCC
Confidence 35689999999999999777654 32 12478999999988887776654322222345566543221 1257
Q ss_pred ccEEEec
Q 011347 432 IDFVICQ 438 (488)
Q Consensus 432 ~DLVIGG 438 (488)
||+|+-+
T Consensus 146 fD~I~~~ 152 (212)
T PRK13942 146 YDRIYVT 152 (212)
T ss_pred cCEEEEC
Confidence 8887643
No 106
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=91.71 E-value=0.59 Score=44.43 Aligned_cols=75 Identities=15% Similarity=0.084 Sum_probs=49.8
Q ss_pred CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347 355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 434 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL 434 (488)
+.+|||+=||.|-.+.-|.+.|.+ |.++|+++.+.+..+......+- .......|+.... + .+.+|+
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~~---V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~---~------~~~fD~ 97 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGYD---VRAWDHNPASIASVLDMKARENL-PLRTDAYDINAAA---L------NEDYDF 97 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHHhCC-CceeEeccchhcc---c------cCCCCE
Confidence 468999999999999999888874 68899999988877654432221 1112233443221 1 136899
Q ss_pred EEecCCCC
Q 011347 435 VICQNSVP 442 (488)
Q Consensus 435 VIGGpPCQ 442 (488)
|+...+.-
T Consensus 98 I~~~~~~~ 105 (195)
T TIGR00477 98 IFSTVVFM 105 (195)
T ss_pred EEEecccc
Confidence 88766543
No 107
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=91.59 E-value=0.17 Score=52.67 Aligned_cols=62 Identities=24% Similarity=0.270 Sum_probs=46.2
Q ss_pred cccCcchhhhccccccCCCCCcccccCCCCChhHH-HHHHcCCeeeeEEEeeCCHHHHHHHHHHhh
Q 011347 336 FQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEV-TLHRLGIKLKGVISIETSETNRRILKRWWE 400 (488)
Q Consensus 336 fqvdti~~~lsvLK~~fp~~itVLDLFSGiGGlsl-GL~~aGi~~k~vvsVEid~~a~~t~~~~~~ 400 (488)
|+--.+.--++|++ ++..+-.++|||||||=|.+ -+-.+|- +.|+|+|+|+.+..++++.-.
T Consensus 177 FS~GN~~EK~Rv~~-~sc~~eviVDLYAGIGYFTlpflV~agA--k~V~A~EwNp~svEaLrR~~~ 239 (351)
T KOG1227|consen 177 FSRGNIKEKKRVLN-TSCDGEVIVDLYAGIGYFTLPFLVTAGA--KTVFACEWNPWSVEALRRNAE 239 (351)
T ss_pred hhcCcHHHHHHhhh-cccccchhhhhhcccceEEeehhhccCc--cEEEEEecCHHHHHHHHHHHH
Confidence 33333344445543 34556779999999999999 6678997 469999999999999998643
No 108
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=91.58 E-value=0.37 Score=47.89 Aligned_cols=75 Identities=16% Similarity=0.200 Sum_probs=47.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHH-HHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNR-RILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~-~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+.+|||+-||.||++..+.+.|. +.|++||+++.-. ..++. +..-......||+.++.+++. ..+..+
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~-----~~~v~~~~~~ni~~~~~~~~~---~d~~~~ 144 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQ-----DERVKVLERTNIRYVTPADIF---PDFATF 144 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhc-----CCCeeEeecCCcccCCHhHcC---CCceee
Confidence 567899999999999999999985 4589999999422 12221 111112344577766655542 123456
Q ss_pred cEEEec
Q 011347 433 DFVICQ 438 (488)
Q Consensus 433 DLVIGG 438 (488)
|+++-+
T Consensus 145 DvsfiS 150 (228)
T TIGR00478 145 DVSFIS 150 (228)
T ss_pred eEEEee
Confidence 766543
No 109
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=91.47 E-value=0.53 Score=47.38 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=36.2
Q ss_pred CcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhh
Q 011347 356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 401 (488)
Q Consensus 356 itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~ 401 (488)
-+|||+=||.|...+-|.+.|++ |.++|+++.+.+..+.....
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~~---V~avD~s~~ai~~~~~~~~~ 164 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGFD---VTAVDINQQSLENLQEIAEK 164 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHH
Confidence 38999999999999999888974 68999999998877765443
No 110
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=91.39 E-value=0.71 Score=44.21 Aligned_cols=82 Identities=20% Similarity=0.127 Sum_probs=51.1
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCC
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
.+.+|||+.||.|..+.-+.++ +-. ..|+++|+++......+.+....+... ..+..+|..+.-. ..+.
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~-g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~--------~~~~ 142 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERR-GKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE--------KHAP 142 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc--------cCCC
Confidence 4578999999999998776653 211 247899999997766665543322111 2244566654221 1257
Q ss_pred ccEEEecCCCCCc
Q 011347 432 IDFVICQNSVPQI 444 (488)
Q Consensus 432 ~DLVIGGpPCQ~F 444 (488)
||+|+-+..+..+
T Consensus 143 fD~Ii~~~~~~~~ 155 (205)
T PRK13944 143 FDAIIVTAAASTI 155 (205)
T ss_pred ccEEEEccCcchh
Confidence 9988877655443
No 111
>PRK05785 hypothetical protein; Provisional
Probab=91.29 E-value=0.52 Score=46.10 Aligned_cols=70 Identities=16% Similarity=0.211 Sum_probs=48.6
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+-+||||-||.|-+...|.+. |. -|+++|+++...+.-+. + .. .+.+|..++.-. -+.|
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~---~v~gvD~S~~Ml~~a~~---~----~~-~~~~d~~~lp~~--------d~sf 111 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKY---YVVALDYAENMLKMNLV---A----DD-KVVGSFEALPFR--------DKSF 111 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCC---EEEEECCCHHHHHHHHh---c----cc-eEEechhhCCCC--------CCCE
Confidence 4578999999999998888877 43 37899999998766542 1 11 345666655321 2579
Q ss_pred cEEEecCCCC
Q 011347 433 DFVICQNSVP 442 (488)
Q Consensus 433 DLVIGGpPCQ 442 (488)
|+|+.+.-.+
T Consensus 112 D~v~~~~~l~ 121 (226)
T PRK05785 112 DVVMSSFALH 121 (226)
T ss_pred EEEEecChhh
Confidence 9999876443
No 112
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=91.23 E-value=0.54 Score=51.43 Aligned_cols=86 Identities=10% Similarity=0.103 Sum_probs=59.2
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+.+|||+.||-||=+..+..+ +-+ -.|+|+|+++.-.++++.+-...+.....+...|.+++.. . ..+.|
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~-g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~-----~--~~~~f 184 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQ-GAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGA-----A--LPETF 184 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhh-----h--chhhc
Confidence 5678999999999999877653 211 1488999999998898887665433222333455544322 1 11469
Q ss_pred cEEEecCCCCCcccc
Q 011347 433 DFVICQNSVPQIPNS 447 (488)
Q Consensus 433 DLVIGGpPCQ~FS~a 447 (488)
|.|+==.||.+...-
T Consensus 185 D~ILvDaPCSG~G~~ 199 (470)
T PRK11933 185 DAILLDAPCSGEGTV 199 (470)
T ss_pred CeEEEcCCCCCCccc
Confidence 999999999987654
No 113
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=91.17 E-value=0.56 Score=45.91 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=35.1
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHH
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL 395 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~ 395 (488)
+.+-+||++.||.|--.+-|-..|++ |++||+++.|.+.+
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~~---V~avD~s~~Ai~~~ 75 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGHE---VLGVELSELAVEQF 75 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCCe---EEEEccCHHHHHHH
Confidence 45679999999999999999999986 68999999998764
No 114
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=91.02 E-value=0.52 Score=45.60 Aligned_cols=74 Identities=14% Similarity=0.055 Sum_probs=47.1
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccCh-hhHHHhhhccCC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT-KKFESLIHKLGS 431 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~-~~Ie~l~~~~g~ 431 (488)
+.+-+||||=||.|+++..+.+..-.-..|++||+++.. +.++..++.+|+.+... ..|.... ..+.
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~-----------~~~~v~~i~~D~~~~~~~~~i~~~~-~~~~ 117 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD-----------PIVGVDFLQGDFRDELVLKALLERV-GDSK 117 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc-----------CCCCcEEEecCCCChHHHHHHHHHh-CCCC
Confidence 346689999999999987665542111358899999831 12344567889887542 2222111 2367
Q ss_pred ccEEEec
Q 011347 432 IDFVICQ 438 (488)
Q Consensus 432 ~DLVIGG 438 (488)
+|+|+..
T Consensus 118 ~D~V~S~ 124 (209)
T PRK11188 118 VQVVMSD 124 (209)
T ss_pred CCEEecC
Confidence 9999973
No 115
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=90.84 E-value=0.41 Score=49.37 Aligned_cols=53 Identities=23% Similarity=0.276 Sum_probs=42.4
Q ss_pred ccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhh
Q 011347 346 SVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 400 (488)
Q Consensus 346 svLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~ 400 (488)
+.|..+...+-+|||+=||.|=++++..++|-. -|+++|||+.|.++-+.|-.
T Consensus 153 ~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~ 205 (295)
T PF06325_consen 153 ELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAE 205 (295)
T ss_dssp HHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHH
T ss_pred HHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHH
Confidence 334444456679999999999999999999974 48999999999998887654
No 116
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=90.79 E-value=0.58 Score=45.58 Aligned_cols=81 Identities=15% Similarity=0.098 Sum_probs=53.0
Q ss_pred hhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhh
Q 011347 342 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKK 421 (488)
Q Consensus 342 ~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~ 421 (488)
..+++.|.. ...-+|||+=||.|.++..|...|. .++++|+++...+..+.. .....++.+|+.++.-
T Consensus 32 ~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~-----~~~~~~~~~d~~~~~~-- 99 (251)
T PRK10258 32 DALLAMLPQ--RKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQK-----DAADHYLAGDIESLPL-- 99 (251)
T ss_pred HHHHHhcCc--cCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhh-----CCCCCEEEcCcccCcC--
Confidence 334444443 2346799999999999988888774 378999999987666542 1112245677765531
Q ss_pred HHHhhhccCCccEEEecCC
Q 011347 422 FESLIHKLGSIDFVICQNS 440 (488)
Q Consensus 422 Ie~l~~~~g~~DLVIGGpP 440 (488)
..+.||+|+...+
T Consensus 100 ------~~~~fD~V~s~~~ 112 (251)
T PRK10258 100 ------ATATFDLAWSNLA 112 (251)
T ss_pred ------CCCcEEEEEECch
Confidence 1146899886543
No 117
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=90.73 E-value=0.37 Score=45.32 Aligned_cols=78 Identities=14% Similarity=0.054 Sum_probs=53.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+||||-||.|.++..+.+.+... .+.++|+++......+.... ....++.+|+.++.. ..+.+|
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~-~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~--------~~~~fD 100 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQA-EFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPL--------EDSSFD 100 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCC-cEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCC--------CCCcee
Confidence 34789999999999999999887543 37899999988766654321 112245567765431 114689
Q ss_pred EEEecCCCCCc
Q 011347 434 FVICQNSVPQI 444 (488)
Q Consensus 434 LVIGGpPCQ~F 444 (488)
+|+....++.+
T Consensus 101 ~vi~~~~l~~~ 111 (240)
T TIGR02072 101 LIVSNLALQWC 111 (240)
T ss_pred EEEEhhhhhhc
Confidence 99977665543
No 118
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=90.72 E-value=0.31 Score=45.35 Aligned_cols=40 Identities=33% Similarity=0.428 Sum_probs=31.5
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHH
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL 395 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~ 395 (488)
+.+-.|||.|+|.|.-.++..++|-+ .+++|+++..+++.
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~R~---~ig~E~~~~y~~~a 229 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELGRR---YIGIEIDEEYCEIA 229 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT-E---EEEEESSHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHcCCe---EEEEeCCHHHHHHh
Confidence 45667999999999999999999954 67899999977654
No 119
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=90.65 E-value=0.88 Score=45.45 Aligned_cols=72 Identities=24% Similarity=0.316 Sum_probs=46.8
Q ss_pred hhHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcchhhhccccccCCCCCcccccCCCCChhHHHHHH-cCCeeeeEE
Q 011347 305 EHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVI 383 (488)
Q Consensus 305 ~E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~-aGi~~k~vv 383 (488)
.=.|+|||.-.-|+- ++..++.. ++.+. .+.+.+|||+=||.|+.+..+.+ .|. .|+
T Consensus 22 ~~~e~~~g~~~~~~g--g~~~~~~~---------------l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~~~---~v~ 79 (263)
T PTZ00098 22 KAYEFIFGEDYISSG--GIEATTKI---------------LSDIE--LNENSKVLDIGSGLGGGCKYINEKYGA---HVH 79 (263)
T ss_pred hhHHHHhCCCCCCCC--chHHHHHH---------------HHhCC--CCCCCEEEEEcCCCChhhHHHHhhcCC---EEE
Confidence 345788887555554 44444333 22221 24567899999999998877744 354 378
Q ss_pred EeeCCHHHHHHHHHH
Q 011347 384 SIETSETNRRILKRW 398 (488)
Q Consensus 384 sVEid~~a~~t~~~~ 398 (488)
++|+++......+..
T Consensus 80 giD~s~~~~~~a~~~ 94 (263)
T PTZ00098 80 GVDICEKMVNIAKLR 94 (263)
T ss_pred EEECCHHHHHHHHHH
Confidence 999999877666553
No 120
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=90.33 E-value=0.82 Score=42.68 Aligned_cols=74 Identities=22% Similarity=0.153 Sum_probs=49.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||+-||.|.+...+-+.+-....++++|+++......+.... ......+..+|+.++.. ..+.+|
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~--------~~~~~D 108 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPF--------EDNSFD 108 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCC--------CCCcEE
Confidence 56789999999999999888776431247899999988777665432 11122345567765431 114688
Q ss_pred EEEe
Q 011347 434 FVIC 437 (488)
Q Consensus 434 LVIG 437 (488)
+|+-
T Consensus 109 ~i~~ 112 (223)
T TIGR01934 109 AVTI 112 (223)
T ss_pred EEEE
Confidence 8764
No 121
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=90.25 E-value=1 Score=44.93 Aligned_cols=77 Identities=17% Similarity=0.076 Sum_probs=48.6
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhh---hcCCCCCcceeccccccChhhHHHhhhcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWE---SSGQTGELVQIEDIQALTTKKFESLIHKL 429 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~---~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~ 429 (488)
.+.+|||+-||.|.+...+.+. |-. ..|+++|+++...+..+.... ........++.+|+.++.-. .
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~--------~ 143 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFD--------D 143 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCC--------C
Confidence 4678999999999998877653 422 247899999998776653211 00111222456777665421 1
Q ss_pred CCccEEEecC
Q 011347 430 GSIDFVICQN 439 (488)
Q Consensus 430 g~~DLVIGGp 439 (488)
+.||+|+.+.
T Consensus 144 ~sfD~V~~~~ 153 (261)
T PLN02233 144 CYFDAITMGY 153 (261)
T ss_pred CCEeEEEEec
Confidence 4699998654
No 122
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=90.10 E-value=1.4 Score=47.11 Aligned_cols=77 Identities=18% Similarity=0.150 Sum_probs=51.6
Q ss_pred eEEEeeCCHHHHHHHHHHhhhcCCCCCc-ceeccccccChhhHHHhhhccCCccEEEecCCCCCccccCCCCCCCCcccc
Q 011347 381 GVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMA 459 (488)
Q Consensus 381 ~vvsVEid~~a~~t~~~~~~~~n~~g~l-v~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~ank~~r~G~~~m~ 459 (488)
.++++|||+...+.-+.|..+....+.+ +...|++.+... +..+|+||+-||=-
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~--------~~~~gvvI~NPPYG----------------- 310 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP--------LEEYGVVISNPPYG----------------- 310 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC--------CCcCCEEEeCCCcc-----------------
Confidence 4779999999999999888766443322 345777777643 24789999988821
Q ss_pred ccCCCCCCCCcchHHHHHHHHHHh
Q 011347 460 AESDNLPDFDFSLYYEFVRVVQRV 483 (488)
Q Consensus 460 g~r~Gl~D~Rs~LF~EfvRIV~~v 483 (488)
.|-|-+..-..||.+|.+.++..
T Consensus 311 -eRlg~~~~v~~LY~~fg~~lk~~ 333 (381)
T COG0116 311 -ERLGSEALVAKLYREFGRTLKRL 333 (381)
T ss_pred -hhcCChhhHHHHHHHHHHHHHHH
Confidence 22222222345899999888554
No 123
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=89.92 E-value=0.83 Score=43.28 Aligned_cols=43 Identities=37% Similarity=0.359 Sum_probs=35.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHh
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 399 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~ 399 (488)
.+.+|||+-||.|.+...+.+.|.. ++++|+++......+...
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~ 87 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGAN---VTGIDASEENIEVAKLHA 87 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHHHH
Confidence 4688999999999999888888764 778999998776666543
No 124
>PRK10742 putative methyltransferase; Provisional
Probab=89.65 E-value=1.2 Score=45.12 Aligned_cols=84 Identities=15% Similarity=0.192 Sum_probs=54.9
Q ss_pred CcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcc--eeccccccChhhHHHhhhccCCcc
Q 011347 356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELV--QIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 356 itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv--~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+|||+|+|-|..+.=+-.+|.. |..||-++.....++.......+...+- +...|+=+..+.+.-+-..-..||
T Consensus 90 p~VLD~TAGlG~Da~~las~G~~---V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fD 166 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (250)
T ss_pred CEEEECCCCccHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCc
Confidence 48999999999998888889974 7889999999999887665422111110 012243334443332222224699
Q ss_pred EEEecCCCC
Q 011347 434 FVICQNSVP 442 (488)
Q Consensus 434 LVIGGpPCQ 442 (488)
+|.-=||=.
T Consensus 167 VVYlDPMfp 175 (250)
T PRK10742 167 VVYLDPMFP 175 (250)
T ss_pred EEEECCCCC
Confidence 999998743
No 125
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=89.58 E-value=0.94 Score=46.07 Aligned_cols=88 Identities=20% Similarity=0.204 Sum_probs=60.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||+.|+-||=+..+-.+-..--.++++|+++.-...++.+..+.+.....+...|-+++...... ..||
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~------~~fd 158 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPE------SKFD 158 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHT------TTEE
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccc------cccc
Confidence 4567999999999998777665432235889999999999998876655433332333444444322221 2599
Q ss_pred EEEecCCCCCcccc
Q 011347 434 FVICQNSVPQIPNS 447 (488)
Q Consensus 434 LVIGGpPCQ~FS~a 447 (488)
.|+-=.||.+....
T Consensus 159 ~VlvDaPCSg~G~i 172 (283)
T PF01189_consen 159 RVLVDAPCSGLGTI 172 (283)
T ss_dssp EEEEECSCCCGGGT
T ss_pred hhhcCCCccchhhh
Confidence 99999999997654
No 126
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=89.47 E-value=1.1 Score=44.06 Aligned_cols=92 Identities=14% Similarity=0.138 Sum_probs=55.6
Q ss_pred hhhhccccccCCCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccCh
Q 011347 342 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTT 419 (488)
Q Consensus 342 ~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~ 419 (488)
+.+|+.|-... +.-+||++.+|+|.-.+.+-.+ +-.- .++++|+|+.+.+..+.+|...+... ..++.+|..++
T Consensus 57 g~~L~~l~~~~-~~~~vLEiGt~~G~s~l~la~~~~~~g-~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~-- 132 (234)
T PLN02781 57 GLFLSMLVKIM-NAKNTLEIGVFTGYSLLTTALALPEDG-RITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA-- 132 (234)
T ss_pred HHHHHHHHHHh-CCCEEEEecCcccHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--
Confidence 33444444433 3457999999999765555432 2121 37899999999999999987654322 12445666432
Q ss_pred hhHHHhhhc--cCCccEEEecC
Q 011347 420 KKFESLIHK--LGSIDFVICQN 439 (488)
Q Consensus 420 ~~Ie~l~~~--~g~~DLVIGGp 439 (488)
+..+... .+.||+|+-..
T Consensus 133 --L~~l~~~~~~~~fD~VfiDa 152 (234)
T PLN02781 133 --LDQLLNNDPKPEFDFAFVDA 152 (234)
T ss_pred --HHHHHhCCCCCCCCEEEECC
Confidence 2333222 25799887553
No 127
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=89.46 E-value=1.1 Score=42.28 Aligned_cols=76 Identities=21% Similarity=0.161 Sum_probs=49.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+.+|||+-||.|.++..+...+-....++++|+++......+.+....+.. ...+...|+.++.. ..+.+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~ 122 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF--------PDNSF 122 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC--------CCCCc
Confidence 3578999999999999888877621235789999998877777654332111 12244566655431 12468
Q ss_pred cEEEe
Q 011347 433 DFVIC 437 (488)
Q Consensus 433 DLVIG 437 (488)
|+|+.
T Consensus 123 D~I~~ 127 (239)
T PRK00216 123 DAVTI 127 (239)
T ss_pred cEEEE
Confidence 88874
No 128
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=89.42 E-value=0.8 Score=44.95 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=51.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||+=||.|.+...|.+..-. ..|+++|+++...+..+. .+..++.+|+.++.. .+.||
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~-~~v~gvD~s~~~~~~a~~-------~~~~~~~~d~~~~~~---------~~~fD 91 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPG-AVIEALDSSPEMVAAARE-------RGVDARTGDVRDWKP---------KPDTD 91 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHh-------cCCcEEEcChhhCCC---------CCCce
Confidence 5578999999999999888876211 236899999987665542 123355677765432 25799
Q ss_pred EEEecCCCCCc
Q 011347 434 FVICQNSVPQI 444 (488)
Q Consensus 434 LVIGGpPCQ~F 444 (488)
+|+.....+-+
T Consensus 92 ~v~~~~~l~~~ 102 (255)
T PRK14103 92 VVVSNAALQWV 102 (255)
T ss_pred EEEEehhhhhC
Confidence 99998766544
No 129
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=89.35 E-value=0.89 Score=44.36 Aligned_cols=75 Identities=12% Similarity=0.089 Sum_probs=49.9
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
..+.+|||+=||.|.+...|.+.. +...|+++|+++...+..+... ....++.+|+.++... +.+
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~~~---------~~f 94 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQPP---------QAL 94 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccCCC---------CCc
Confidence 356789999999999988887652 1234789999999887766532 1222455677654321 368
Q ss_pred cEEEecCCCC
Q 011347 433 DFVICQNSVP 442 (488)
Q Consensus 433 DLVIGGpPCQ 442 (488)
|+|+.....+
T Consensus 95 D~v~~~~~l~ 104 (258)
T PRK01683 95 DLIFANASLQ 104 (258)
T ss_pred cEEEEccChh
Confidence 8888766544
No 130
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=89.34 E-value=0.91 Score=47.27 Aligned_cols=77 Identities=19% Similarity=0.160 Sum_probs=46.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||+.||.|.++.-+.++.-.-..|+++|+++...+..+......+.....++.+|..+... ..+.+|
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~--------~~~~fD 151 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP--------EFAPYD 151 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc--------ccCCcc
Confidence 567899999999999887765421111378999999876655554333222222344566543221 124577
Q ss_pred EEEec
Q 011347 434 FVICQ 438 (488)
Q Consensus 434 LVIGG 438 (488)
+|+-+
T Consensus 152 ~Ii~~ 156 (322)
T PRK13943 152 VIFVT 156 (322)
T ss_pred EEEEC
Confidence 77653
No 131
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=89.27 E-value=0.43 Score=50.71 Aligned_cols=62 Identities=23% Similarity=0.306 Sum_probs=42.3
Q ss_pred cccCcchhhhccccccCCCCCcccccCCCCC--hhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhh
Q 011347 336 FQTDTLGYHLSVLKSMFPGGLTMLSVFSGIG--GAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 400 (488)
Q Consensus 336 fqvdti~~~lsvLK~~fp~~itVLDLFSGiG--GlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~ 400 (488)
.++-.+. .+++++.-...++++||-+||+| |+.++.+-.|. ..|+++|+|+.|.+.++.|-.
T Consensus 32 lsvl~~~-~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~--~~v~~NDi~~~a~~~i~~N~~ 95 (377)
T PF02005_consen 32 LSVLAIR-YLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGV--DKVTANDISPEAVELIKRNLE 95 (377)
T ss_dssp HHHHH----HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSE--CEEEEEES-HHHHHHHHHHHH
T ss_pred eeehhHH-HHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCC--CEEEEecCCHHHHHHHHHhHh
Confidence 4444444 35555554456799999999999 99999997775 458899999999999988754
No 132
>PLN02672 methionine S-methyltransferase
Probab=88.96 E-value=0.7 Score=55.28 Aligned_cols=46 Identities=9% Similarity=0.005 Sum_probs=37.1
Q ss_pred CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhh
Q 011347 355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 401 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~ 401 (488)
+.+||||-||.|-+.+.+...+=. ..|+++||++.+....+.|...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~ 164 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYL 164 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHH
Confidence 458999999999999998775421 3478999999999888877653
No 133
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=88.95 E-value=1.2 Score=44.66 Aligned_cols=83 Identities=18% Similarity=0.176 Sum_probs=53.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.|.+|||+-||.|=+.+.+.+..=.- -|+++|+++.-.+.-+.-..+.+..+.-++.+|..+|.-. -..||
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g-~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~--------D~sFD 121 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTG-EVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFP--------DNSFD 121 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCc-eEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCC--------CCccC
Confidence 68999999999999999887643133 4678999998766655422222111222456777666521 14689
Q ss_pred EEEecCCCCCcc
Q 011347 434 FVICQNSVPQIP 445 (488)
Q Consensus 434 LVIGGpPCQ~FS 445 (488)
+|+-++==+++.
T Consensus 122 ~vt~~fglrnv~ 133 (238)
T COG2226 122 AVTISFGLRNVT 133 (238)
T ss_pred EEEeeehhhcCC
Confidence 988776444443
No 134
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=88.66 E-value=0.87 Score=51.91 Aligned_cols=54 Identities=11% Similarity=0.143 Sum_probs=37.3
Q ss_pred eEEEeeCCHHHHHHHHHHhhhcCCCCC-cceeccccccChhhHHHhhhccCCccEEEecCC
Q 011347 381 GVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFESLIHKLGSIDFVICQNS 440 (488)
Q Consensus 381 ~vvsVEid~~a~~t~~~~~~~~n~~g~-lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpP 440 (488)
.++++|+|+.+....+.+....+.... .+..+|+.++.... ..+.+|+|+.=||
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~------~~~~~d~IvtNPP 312 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL------PKGPTGLVISNPP 312 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc------ccCCCCEEEECCC
Confidence 378999999999999988776543332 24567777664311 1146899998887
No 135
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=88.52 E-value=0.77 Score=48.58 Aligned_cols=77 Identities=25% Similarity=0.251 Sum_probs=51.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCccee-ccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQI-EDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~-~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.|-.|||=|||.||+-+-.--.|.. ++++||+....+=.+.|....+-.+-.+.. .|++++. +.+ ..|
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl~G~~---viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp---l~~-----~~v 265 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGLMGAR---VIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP---LRD-----NSV 265 (347)
T ss_pred cCCEeecCcCCccHHHHhhhhcCce---EeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC---CCC-----Ccc
Confidence 4567999999999999888888875 678999998766555544322211211222 2666655 211 149
Q ss_pred cEEEecCCC
Q 011347 433 DFVICQNSV 441 (488)
Q Consensus 433 DLVIGGpPC 441 (488)
|-|+.=||=
T Consensus 266 daIatDPPY 274 (347)
T COG1041 266 DAIATDPPY 274 (347)
T ss_pred ceEEecCCC
Confidence 999999884
No 136
>PRK00811 spermidine synthase; Provisional
Probab=88.47 E-value=1 Score=45.67 Aligned_cols=78 Identities=15% Similarity=0.224 Sum_probs=52.5
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcC-----CCCCcceeccccccChhhHHHhh
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALTTKKFESLI 426 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n-----~~g~lv~~~DI~~L~~~~Ie~l~ 426 (488)
+++-+||+|-+|.|++..-+.+. +. +-|..||+|+...+..+.++...+ .+...++.+|..+.-.
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~--~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~------- 145 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSV--EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA------- 145 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCC--CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh-------
Confidence 45678999999999998766554 54 458899999999999988775321 1122245566544211
Q ss_pred hccCCccEEEecC
Q 011347 427 HKLGSIDFVICQN 439 (488)
Q Consensus 427 ~~~g~~DLVIGGp 439 (488)
...+.+|+|+.-.
T Consensus 146 ~~~~~yDvIi~D~ 158 (283)
T PRK00811 146 ETENSFDVIIVDS 158 (283)
T ss_pred hCCCcccEEEECC
Confidence 1235799999754
No 137
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=88.19 E-value=1.6 Score=45.53 Aligned_cols=81 Identities=15% Similarity=0.261 Sum_probs=49.2
Q ss_pred CCCcccccCCCCChhHHHHH--HcCCeeeeEEEeeCCHHHHHHHHHHhhhc-CCCCCc-c-eeccccccChhhHHHhhhc
Q 011347 354 GGLTMLSVFSGIGGAEVTLH--RLGIKLKGVISIETSETNRRILKRWWESS-GQTGEL-V-QIEDIQALTTKKFESLIHK 428 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~--~aGi~~k~vvsVEid~~a~~t~~~~~~~~-n~~g~l-v-~~~DI~~L~~~~Ie~l~~~ 428 (488)
.+.++|||=||+|++..-+- .-|.+ ++++|||+.+.+..+.+-..+ +..+.+ + ...|...+- ..+...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~---~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~----~~i~~~ 186 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWR---FVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIF----KGIIHK 186 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCE---EEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhh----hccccc
Confidence 46889999999998865443 33543 688999999998888765443 122211 1 112222211 111112
Q ss_pred cCCccEEEecCCC
Q 011347 429 LGSIDFVICQNSV 441 (488)
Q Consensus 429 ~g~~DLVIGGpPC 441 (488)
.+.||+|+.=||=
T Consensus 187 ~~~fDlivcNPPf 199 (321)
T PRK11727 187 NERFDATLCNPPF 199 (321)
T ss_pred CCceEEEEeCCCC
Confidence 3579999999983
No 138
>PRK08317 hypothetical protein; Provisional
Probab=87.93 E-value=1.8 Score=40.52 Aligned_cols=45 Identities=27% Similarity=0.184 Sum_probs=33.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHH
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 398 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~ 398 (488)
.+.+|||+-||.|++...+.+.......++++|+++......+..
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~ 63 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER 63 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence 467899999999999888876431223478999999876665543
No 139
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=87.74 E-value=1.3 Score=43.85 Aligned_cols=77 Identities=22% Similarity=0.266 Sum_probs=44.2
Q ss_pred CCCcccccCCCCChhHHHHHH-cCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~-aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+.+|||+-||.|=++..+.+ +|-.. -|+++|+++.-.+..+.--.+.......++.+|..++.-.+ +.|
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~-~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d--------~sf 117 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNG-KVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPD--------NSF 117 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS----EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-T--------T-E
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCcc-EEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCC--------Cce
Confidence 467999999999999887765 45333 47889999997776654322222222335668887775321 479
Q ss_pred cEEEecC
Q 011347 433 DFVICQN 439 (488)
Q Consensus 433 DLVIGGp 439 (488)
|+|+.++
T Consensus 118 D~v~~~f 124 (233)
T PF01209_consen 118 DAVTCSF 124 (233)
T ss_dssp EEEEEES
T ss_pred eEEEHHh
Confidence 9998776
No 140
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=87.16 E-value=0.37 Score=46.68 Aligned_cols=52 Identities=21% Similarity=0.224 Sum_probs=33.7
Q ss_pred hccccccCC--CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHh
Q 011347 345 LSVLKSMFP--GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 399 (488)
Q Consensus 345 lsvLK~~fp--~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~ 399 (488)
+..+.+++| ..-+++|+|||.|+..+.+...+ ..++..|+++.....++...
T Consensus 9 ~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~---~~vi~ND~~~~l~~~~~~~l 62 (260)
T PF02086_consen 9 AKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPG---KRVIINDINPDLINFWKAVL 62 (260)
T ss_dssp HHHHHHHS-S-S-SEEEETT-TTSHHHHCC---S---SEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCEEEEEecchhHHHHHhcccc---cceeeeechHHHHHHHHHHH
Confidence 333445566 57789999999999888876655 45788999999888777433
No 141
>PRK06202 hypothetical protein; Provisional
Probab=87.08 E-value=1.9 Score=41.61 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=47.6
Q ss_pred CCCCcccccCCCCChhHHHHHH----cCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHR----LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK 428 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~----aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~ 428 (488)
.++.+||||=||.|++...|.+ .|...+ ++++|+++...+..+..- ...+..+...|...+.. .
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~-v~gvD~s~~~l~~a~~~~---~~~~~~~~~~~~~~l~~--------~ 126 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLE-VTAIDPDPRAVAFARANP---RRPGVTFRQAVSDELVA--------E 126 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcE-EEEEcCCHHHHHHHHhcc---ccCCCeEEEEecccccc--------c
Confidence 3567899999999998887753 465433 789999999877665421 11122223333332221 1
Q ss_pred cCCccEEEecCCC
Q 011347 429 LGSIDFVICQNSV 441 (488)
Q Consensus 429 ~g~~DLVIGGpPC 441 (488)
.+.+|+|+...-.
T Consensus 127 ~~~fD~V~~~~~l 139 (232)
T PRK06202 127 GERFDVVTSNHFL 139 (232)
T ss_pred CCCccEEEECCee
Confidence 2579999876533
No 142
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=86.96 E-value=2.1 Score=41.69 Aligned_cols=42 Identities=21% Similarity=0.206 Sum_probs=34.9
Q ss_pred CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHh
Q 011347 355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 399 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~ 399 (488)
+-++|||=||-|.=++=|.+.|++ |.|+|+++.+...++..-
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~---VtAvD~s~~al~~l~~~a 72 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFD---VTAVDISPVALEKLQRLA 72 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-E---EEEEESSHHHHHHHHHHH
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHHH
Confidence 468999999999999999999996 678999999988776543
No 143
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=86.74 E-value=0.98 Score=34.16 Aligned_cols=33 Identities=21% Similarity=0.406 Sum_probs=27.0
Q ss_pred hhhHHhcCCCHHHHHHHHHHh--CCCCchhhhhhh
Q 011347 4 TLQLLEMGFSENQVSLAIEKF--GSKTPISELADK 36 (488)
Q Consensus 4 ~~~l~~mgf~~~e~~~ai~~~--g~~~~~~~l~d~ 36 (488)
+..|+..||++.||..||.+. +++.+++++...
T Consensus 7 ~~AL~~LGy~~~e~~~av~~~~~~~~~~~e~~ik~ 41 (47)
T PF07499_consen 7 LEALISLGYSKAEAQKAVSKLLEKPGMDVEELIKQ 41 (47)
T ss_dssp HHHHHHTTS-HHHHHHHHHHHHHSTTS-HHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 467999999999999999999 899998887654
No 144
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=86.48 E-value=1.7 Score=40.71 Aligned_cols=74 Identities=14% Similarity=0.069 Sum_probs=45.4
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhc--cC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK--LG 430 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~--~g 430 (488)
+.+-+|||+=||.||++..+.+....-..++++|+++.. + ..+..++..|+.+... ++.+... .+
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~-------~~~i~~~~~d~~~~~~--~~~l~~~~~~~ 97 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----P-------IENVDFIRGDFTDEEV--LNKIRERVGDD 97 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----c-------CCCceEEEeeCCChhH--HHHHHHHhCCC
Confidence 456789999999999988776654222247899999853 1 1122245567765321 2222211 24
Q ss_pred CccEEEecC
Q 011347 431 SIDFVICQN 439 (488)
Q Consensus 431 ~~DLVIGGp 439 (488)
.+|+|+...
T Consensus 98 ~~D~V~~~~ 106 (188)
T TIGR00438 98 KVDVVMSDA 106 (188)
T ss_pred CccEEEcCC
Confidence 699999643
No 145
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=85.93 E-value=2 Score=42.43 Aligned_cols=77 Identities=23% Similarity=0.219 Sum_probs=46.8
Q ss_pred CCCCcccccCCCCChhHHHH-HHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347 353 PGGLTMLSVFSGIGGAEVTL-HRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL-~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
+.+-+|||+=||.|....-+ ...|-.. .|+++|+++......+.+....+.....+..+|+.++.- ..+.
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~-~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~--------~~~~ 146 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTG-KVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV--------ADNS 146 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCC-EEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCC--------CCCc
Confidence 45679999999997655433 3445432 378999999988877765433222222234466655431 1146
Q ss_pred ccEEEec
Q 011347 432 IDFVICQ 438 (488)
Q Consensus 432 ~DLVIGG 438 (488)
||+|+..
T Consensus 147 fD~Vi~~ 153 (272)
T PRK11873 147 VDVIISN 153 (272)
T ss_pred eeEEEEc
Confidence 8888744
No 146
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=85.88 E-value=1.2 Score=42.03 Aligned_cols=81 Identities=21% Similarity=0.238 Sum_probs=49.0
Q ss_pred cccccCCCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccc-cChhhHHH
Q 011347 347 VLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA-LTTKKFES 424 (488)
Q Consensus 347 vLK~~fp~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~-L~~~~Ie~ 424 (488)
.+.++.+.+.+|||+-||.|.+...+.+. +. .++++|+++.+....+. . +..++..|+.+ +.. +
T Consensus 6 ~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~---~~~giD~s~~~i~~a~~----~---~~~~~~~d~~~~l~~--~-- 71 (194)
T TIGR02081 6 SILNLIPPGSRVLDLGCGDGELLALLRDEKQV---RGYGIEIDQDGVLACVA----R---GVNVIQGDLDEGLEA--F-- 71 (194)
T ss_pred HHHHhcCCCCEEEEeCCCCCHHHHHHHhccCC---cEEEEeCCHHHHHHHHH----c---CCeEEEEEhhhcccc--c--
Confidence 34444556678999999999999888654 33 35789999987655432 1 12234456543 110 0
Q ss_pred hhhccCCccEEEecCCCCCc
Q 011347 425 LIHKLGSIDFVICQNSVPQI 444 (488)
Q Consensus 425 l~~~~g~~DLVIGGpPCQ~F 444 (488)
..+.+|+|+.....+-+
T Consensus 72 ---~~~sfD~Vi~~~~l~~~ 88 (194)
T TIGR02081 72 ---PDKSFDYVILSQTLQAT 88 (194)
T ss_pred ---CCCCcCEEEEhhHhHcC
Confidence 11357877776554433
No 147
>PRK04148 hypothetical protein; Provisional
Probab=85.88 E-value=2.5 Score=39.08 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=48.4
Q ss_pred CCcccccCCCCCh-hHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 355 GLTMLSVFSGIGG-AEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 355 ~itVLDLFSGiGG-lslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
+.+++++=+|-|. ++..|.++|++ |.++|+++.+.+..+.. +..+..+|+.+-+.+ -+.++|
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~~---ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~-------~y~~a~ 79 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGFD---VIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLE-------IYKNAK 79 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCCE---EEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHH-------HHhcCC
Confidence 4789999999776 78889999985 67899999987666532 334677888765543 134666
Q ss_pred EEEecC
Q 011347 434 FVICQN 439 (488)
Q Consensus 434 LVIGGp 439 (488)
+|.-.-
T Consensus 80 liysir 85 (134)
T PRK04148 80 LIYSIR 85 (134)
T ss_pred EEEEeC
Confidence 665433
No 148
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=85.68 E-value=0.96 Score=48.44 Aligned_cols=80 Identities=16% Similarity=0.171 Sum_probs=51.0
Q ss_pred CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347 355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 434 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL 434 (488)
+.+||||-||.|.++..|-+.+- .|+++|+++.+...-+.. +.......++..|+.+.... + ..+.+|+
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~--~~~~~~i~~~~~d~~~~~~~-~-----~~~~fD~ 106 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESI--NGHYKNVKFMCADVTSPDLN-I-----SDGSVDL 106 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHH--hccCCceEEEEecccccccC-C-----CCCCEEE
Confidence 45899999999999999988764 368999999876543321 11111222455676532210 1 1247999
Q ss_pred EEecCCCCCcc
Q 011347 435 VICQNSVPQIP 445 (488)
Q Consensus 435 VIGGpPCQ~FS 445 (488)
|+...++.-++
T Consensus 107 I~~~~~l~~l~ 117 (475)
T PLN02336 107 IFSNWLLMYLS 117 (475)
T ss_pred EehhhhHHhCC
Confidence 99888766543
No 149
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=85.26 E-value=1.1 Score=41.67 Aligned_cols=81 Identities=19% Similarity=0.188 Sum_probs=48.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccCh-hhHHHhhh-ccCC
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT-KKFESLIH-KLGS 431 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~-~~Ie~l~~-~~g~ 431 (488)
++.+||||-|+-||++..+.+.+-.-..|++||+.+.. ..++...+.+||.+... +.|..... ..+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~-----------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD-----------PLQNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG-----------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc-----------cccceeeeecccchhhHHHhhhhhccccccC
Confidence 45899999999999998888777333568999998872 12233355788876533 22333222 1268
Q ss_pred ccEEE--ecCCCCCcc
Q 011347 432 IDFVI--CQNSVPQIP 445 (488)
Q Consensus 432 ~DLVI--GGpPCQ~FS 445 (488)
+|+|+ |+++|++..
T Consensus 92 ~dlv~~D~~~~~~g~~ 107 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDR 107 (181)
T ss_dssp ESEEEE-------SSH
T ss_pred cceeccccccCCCCch
Confidence 99988 456777653
No 150
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=85.22 E-value=2.7 Score=44.20 Aligned_cols=90 Identities=16% Similarity=0.156 Sum_probs=60.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCe-eeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIK-LKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~-~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+-+|||+.|+-||=+.-+-++.-+ -..|+|+|+++.-.+.++.+-...+.....+...|-+.+... ....+.|
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~-----~~~~~~f 230 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAEL-----LPGGEKF 230 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccc-----ccccCcC
Confidence 4688999999999998877776543 234699999999888888766544333322333443333221 1111249
Q ss_pred cEEEecCCCCCccccC
Q 011347 433 DFVICQNSVPQIPNSK 448 (488)
Q Consensus 433 DLVIGGpPCQ~FS~an 448 (488)
|-|.-=+||.+.....
T Consensus 231 D~iLlDaPCSg~G~ir 246 (355)
T COG0144 231 DRILLDAPCSGTGVIR 246 (355)
T ss_pred cEEEECCCCCCCcccc
Confidence 9999999999988754
No 151
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=84.94 E-value=1.5 Score=42.99 Aligned_cols=96 Identities=22% Similarity=0.236 Sum_probs=59.1
Q ss_pred cCcchhhhccccccCCCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccc
Q 011347 338 TDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA 416 (488)
Q Consensus 338 vdti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~ 416 (488)
...++..+.-|+ ...+.+|||+-||.|=++.-|-.+ | +.-.|++||+++......+.+....+..+..+..+|...
T Consensus 58 P~~~a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg-~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~ 134 (209)
T PF01135_consen 58 PSMVARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVG-PVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSE 134 (209)
T ss_dssp HHHHHHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHS-TTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGG
T ss_pred HHHHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcC-ccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhh
Confidence 345566666666 457899999999999777666654 4 222478999999977776766654433333456677543
Q ss_pred cChhhHHHhhhccCCccEEEecCCCCCc
Q 011347 417 LTTKKFESLIHKLGSIDFVICQNSVPQI 444 (488)
Q Consensus 417 L~~~~Ie~l~~~~g~~DLVIGGpPCQ~F 444 (488)
--. ..++||.|+-+.-|...
T Consensus 135 g~~--------~~apfD~I~v~~a~~~i 154 (209)
T PF01135_consen 135 GWP--------EEAPFDRIIVTAAVPEI 154 (209)
T ss_dssp TTG--------GG-SEEEEEESSBBSS-
T ss_pred ccc--------cCCCcCEEEEeeccchH
Confidence 221 23689998877766543
No 152
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=84.64 E-value=2.1 Score=41.32 Aligned_cols=44 Identities=25% Similarity=0.299 Sum_probs=35.6
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHH
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRW 398 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~ 398 (488)
+.+-+|||+=||.|-....|.+. +. ..+.++|+++.+.+..+.+
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~ 86 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAY 86 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhh
Confidence 45678999999999999999876 22 2478999999998888753
No 153
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=84.40 E-value=3.3 Score=32.85 Aligned_cols=67 Identities=22% Similarity=0.272 Sum_probs=45.0
Q ss_pred cccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEEEe
Q 011347 359 LSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVIC 437 (488)
Q Consensus 359 LDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIG 437 (488)
||+=||.|-....|.+. +. .++++|+++...+..+...... +..+...|+.++.-. -+.||+|+.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~---~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~--------~~sfD~v~~ 66 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGA---SVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFP--------DNSFDVVFS 66 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTC---EEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS---------TT-EEEEEE
T ss_pred CEecCcCCHHHHHHHhccCC---EEEEEeCCHHHHHHHHhccccc---CchheeehHHhCccc--------ccccccccc
Confidence 57778999999999988 54 4789999999887777654322 222667888777422 257999985
Q ss_pred cC
Q 011347 438 QN 439 (488)
Q Consensus 438 Gp 439 (488)
..
T Consensus 67 ~~ 68 (95)
T PF08241_consen 67 NS 68 (95)
T ss_dssp ES
T ss_pred cc
Confidence 54
No 154
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=84.11 E-value=2.1 Score=41.96 Aligned_cols=77 Identities=19% Similarity=0.211 Sum_probs=52.0
Q ss_pred hccccccCCCCCcccccCCCCChhHHHHHH-cCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHH
Q 011347 345 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE 423 (488)
Q Consensus 345 lsvLK~~fp~~itVLDLFSGiGGlslGL~~-aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie 423 (488)
|+.+.++-+.+-+||||=||-|-+-.-|.. .+.. ..++|+|+......- ..|..++.+|+.+ .+.
T Consensus 4 ~~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~---g~GvEid~~~v~~cv-------~rGv~Viq~Dld~----gL~ 69 (193)
T PF07021_consen 4 LQIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVD---GYGVEIDPDNVAACV-------ARGVSVIQGDLDE----GLA 69 (193)
T ss_pred HHHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCe---EEEEecCHHHHHHHH-------HcCCCEEECCHHH----hHh
Confidence 455666777889999999999988777765 5543 678999999754442 2355577788753 222
Q ss_pred HhhhccCCccEEEe
Q 011347 424 SLIHKLGSIDFVIC 437 (488)
Q Consensus 424 ~l~~~~g~~DLVIG 437 (488)
.+ .-+.||.||-
T Consensus 70 ~f--~d~sFD~VIl 81 (193)
T PF07021_consen 70 DF--PDQSFDYVIL 81 (193)
T ss_pred hC--CCCCccEEeh
Confidence 11 1156888774
No 155
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=83.89 E-value=3.5 Score=42.97 Aligned_cols=73 Identities=12% Similarity=0.192 Sum_probs=49.8
Q ss_pred cccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEEE
Q 011347 357 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI 436 (488)
Q Consensus 357 tVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVI 436 (488)
+||||=||.|=+.+.+.+..=+ .-+.-+|+|..|.+.-+.++..++-.+..+...|+.+ .+ .+.||+||
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p~-~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~----~v------~~kfd~Ii 229 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSPQ-AKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE----PV------EGKFDLII 229 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCCC-CeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc----cc------cccccEEE
Confidence 8999999999777777665422 3466799999999999888764333332334444431 11 13799999
Q ss_pred ecCC
Q 011347 437 CQNS 440 (488)
Q Consensus 437 GGpP 440 (488)
.-||
T Consensus 230 sNPP 233 (300)
T COG2813 230 SNPP 233 (300)
T ss_pred eCCC
Confidence 8887
No 156
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=83.75 E-value=3.3 Score=41.43 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=36.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhh
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 401 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~ 401 (488)
++-+||+|.+|.|++...+.+.+ ....+..||+|+...+..+.++..
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~ 118 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPS 118 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHh
Confidence 44599999999999887776654 234578899999988888876543
No 157
>PRK06922 hypothetical protein; Provisional
Probab=83.47 E-value=2.1 Score=48.86 Aligned_cols=86 Identities=20% Similarity=0.161 Sum_probs=53.2
Q ss_pred ccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhh
Q 011347 348 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH 427 (488)
Q Consensus 348 LK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~ 427 (488)
+.++. .+.+|||+.||.|.+...+.+.. +-.-++++|+++.+....+...... .....++.+|+.++.. .+
T Consensus 413 i~d~~-~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~-g~~ie~I~gDa~dLp~-~f----- 483 (677)
T PRK06922 413 ILDYI-KGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNE-GRSWNVIKGDAINLSS-SF----- 483 (677)
T ss_pred Hhhhc-CCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhc-CCCeEEEEcchHhCcc-cc-----
Confidence 33444 46799999999999987776542 2234789999999877776532211 1112234567665431 11
Q ss_pred ccCCccEEEecCCCC
Q 011347 428 KLGSIDFVICQNSVP 442 (488)
Q Consensus 428 ~~g~~DLVIGGpPCQ 442 (488)
..+.||+|+..++-+
T Consensus 484 edeSFDvVVsn~vLH 498 (677)
T PRK06922 484 EKESVDTIVYSSILH 498 (677)
T ss_pred CCCCEEEEEEchHHH
Confidence 125799999776543
No 158
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=82.66 E-value=2.9 Score=42.59 Aligned_cols=76 Identities=17% Similarity=0.156 Sum_probs=56.4
Q ss_pred CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347 355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 434 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL 434 (488)
+-+||++=+|.|+++..|-+.|-. |.++|+|+..+.+++..... .....++.+|+-+++-..+. .++.
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~---v~aiEiD~~l~~~L~~~~~~--~~n~~vi~~DaLk~d~~~l~-------~~~~ 98 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAAR---VTAIEIDRRLAEVLKERFAP--YDNLTVINGDALKFDFPSLA-------QPYK 98 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCe---EEEEEeCHHHHHHHHHhccc--ccceEEEeCchhcCcchhhc-------CCCE
Confidence 578999999999999999998853 78999999999999864321 11223677899887754321 5677
Q ss_pred EEecCCCC
Q 011347 435 VICQNSVP 442 (488)
Q Consensus 435 VIGGpPCQ 442 (488)
|+|--|=+
T Consensus 99 vVaNlPY~ 106 (259)
T COG0030 99 VVANLPYN 106 (259)
T ss_pred EEEcCCCc
Confidence 88777654
No 159
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=82.18 E-value=2.8 Score=41.82 Aligned_cols=41 Identities=24% Similarity=0.169 Sum_probs=34.1
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHH
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK 396 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~ 396 (488)
+.+-+||..=||-|==.+-|...|++ |++||+++.|++.+.
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~~---V~GvDlS~~Ai~~~~ 82 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGVK---VIGIELSEKAVLSFF 82 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCCc---EEEEecCHHHHHHHH
Confidence 34578999988888878888999986 689999999987753
No 160
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=81.84 E-value=2.3 Score=37.37 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=34.3
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHH
Q 011347 352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRI 394 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t 394 (488)
.+.+.+|||+=||.|.+...|...|++ ++++|+++.....
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFE---VTGVDISPQMIEK 59 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSE---EEEEESSHHHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCE---EEEEECCHHHHhh
Confidence 456789999999999999999999984 6789999987544
No 161
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=81.68 E-value=3.8 Score=40.27 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=41.8
Q ss_pred CCCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceecccccc
Q 011347 352 FPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQAL 417 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L 417 (488)
.+.+.+|||+=||.|.....+.+. ..+---++++|+++...+..+......+.. ...++.+|+.++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~ 121 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI 121 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC
Confidence 356788999999999988777652 111123789999998887776644322111 122455666544
No 162
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=80.53 E-value=3.8 Score=44.69 Aligned_cols=72 Identities=17% Similarity=0.219 Sum_probs=46.6
Q ss_pred CCcccccCCCCChhHHHHHHcC----CeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhcc
Q 011347 355 GLTMLSVFSGIGGAEVTLHRLG----IKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKL 429 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~aG----i~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~ 429 (488)
...|+|+=||-|-+....-+|| -.. -|+|||.++.|..+++..-...+- ....++.+|++++...+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~-~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-------- 257 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAV-KVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-------- 257 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCES-EEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--------
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCe-EEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC--------
Confidence 4779999999999987665555 333 478999999998887542111111 22346779999887532
Q ss_pred CCccEEE
Q 011347 430 GSIDFVI 436 (488)
Q Consensus 430 g~~DLVI 436 (488)
++||||
T Consensus 258 -kvDIIV 263 (448)
T PF05185_consen 258 -KVDIIV 263 (448)
T ss_dssp --EEEEE
T ss_pred -ceeEEE
Confidence 689876
No 163
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=80.22 E-value=1 Score=45.94 Aligned_cols=99 Identities=19% Similarity=0.290 Sum_probs=61.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHH--HHhhhcCCCC-CcceeccccccChhhHHHhhhcc-
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK--RWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL- 429 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~--~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~- 429 (488)
.+-+|||-+.|-|=.++.--+.|-. -|..||.|+.-...-+ -|-.. -+.. ..++.+|+.++ +..+
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~--~VitvEkdp~VLeLa~lNPwSr~-l~~~~i~iilGD~~e~--------V~~~~ 202 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAI--HVITVEKDPNVLELAKLNPWSRE-LFEIAIKIILGDAYEV--------VKDFD 202 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCc--EEEEEeeCCCeEEeeccCCCCcc-ccccccEEecccHHHH--------HhcCC
Confidence 5789999999999888777778863 2678999987432111 11110 0111 12445665432 2233
Q ss_pred -CCccEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHH
Q 011347 430 -GSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQR 482 (488)
Q Consensus 430 -g~~DLVIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~ 482 (488)
..||.||--|| -||.|+. +... .+|.|++|||+.
T Consensus 203 D~sfDaIiHDPP--RfS~Age---------------LYse--efY~El~RiLkr 237 (287)
T COG2521 203 DESFDAIIHDPP--RFSLAGE---------------LYSE--EFYRELYRILKR 237 (287)
T ss_pred ccccceEeeCCC--ccchhhh---------------HhHH--HHHHHHHHHcCc
Confidence 35999999999 6776542 3332 378889998863
No 164
>PRK11524 putative methyltransferase; Provisional
Probab=80.12 E-value=2.2 Score=43.06 Aligned_cols=42 Identities=21% Similarity=0.178 Sum_probs=35.1
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHH
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR 397 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~ 397 (488)
..+=.|||-|+|.|.-.++-+++|= ..+++|+++..+++.+.
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR---~~IG~Ei~~~Y~~~a~~ 248 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGR---KFIGIEINSEYIKMGLR 248 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCC---CEEEEeCCHHHHHHHHH
Confidence 4566799999999999999999994 46899999988776543
No 165
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=80.10 E-value=3.1 Score=42.89 Aligned_cols=41 Identities=29% Similarity=0.403 Sum_probs=37.0
Q ss_pred CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHH
Q 011347 355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 398 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~ 398 (488)
++++||.=||.|=++.-|-++|.. |.++|..+.+.++++..
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~---V~GID~s~~~V~vA~~h 130 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQ---VTGIDASDDMVEVANEH 130 (282)
T ss_pred CceEEEeccCccccchhhHhhCCe---eEeecccHHHHHHHHHh
Confidence 688999999999999999999964 78999999999999864
No 166
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=79.91 E-value=3.1 Score=43.52 Aligned_cols=42 Identities=29% Similarity=0.405 Sum_probs=31.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHH
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR 397 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~ 397 (488)
.+.+||||.||=||=-.=...+++. .++++||+..+..-.+.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~--~~vg~Dis~~si~ea~~ 103 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIK--HYVGIDISEESIEEARE 103 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-S--EEEEEES-HHHHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHhcCCC--EEEEEeCCHHHHHHHHH
Confidence 6799999999999977777888874 58999999998775544
No 167
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=79.25 E-value=2.4 Score=41.63 Aligned_cols=74 Identities=19% Similarity=0.132 Sum_probs=47.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhh-cCC--CC---------CcceeccccccChhh
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES-SGQ--TG---------ELVQIEDIQALTTKK 421 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~-~n~--~g---------~lv~~~DI~~L~~~~ 421 (488)
.+-+||..-||-|=--+-|-..|++ |+++|+++.|++.+...... ... .+ ..+..+|+-+++.+.
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G~~---VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQGHD---VVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTTEE---EEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCeEEEeCCCChHHHHHHHHCCCe---EEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 4567999999998777888899975 68999999998776321110 000 00 013456777766543
Q ss_pred HHHhhhccCCccEEEe
Q 011347 422 FESLIHKLGSIDFVIC 437 (488)
Q Consensus 422 Ie~l~~~~g~~DLVIG 437 (488)
+ |.||+|.=
T Consensus 114 ~-------g~fD~iyD 122 (218)
T PF05724_consen 114 V-------GKFDLIYD 122 (218)
T ss_dssp H-------HSEEEEEE
T ss_pred c-------CCceEEEE
Confidence 3 57999974
No 168
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=78.86 E-value=5.7 Score=41.14 Aligned_cols=37 Identities=30% Similarity=0.230 Sum_probs=30.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHH
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNR 392 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~ 392 (488)
.+-+|||+=||.|.+...+-..|.. .|+++|.++...
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l 158 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFL 158 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHH
Confidence 3568999999999999998888864 488999998754
No 169
>PRK13699 putative methylase; Provisional
Probab=78.84 E-value=3.4 Score=40.80 Aligned_cols=42 Identities=26% Similarity=0.301 Sum_probs=34.8
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHH
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR 397 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~ 397 (488)
..+-.|||-|+|.|...++..++|-+ .+++|+++...++...
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r~---~~g~e~~~~y~~~~~~ 203 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGRR---YIGIELLEQYHRAGQQ 203 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCCC---EEEEecCHHHHHHHHH
Confidence 45667999999999999999999965 5789999987665543
No 170
>PRK04266 fibrillarin; Provisional
Probab=78.80 E-value=6.7 Score=38.76 Aligned_cols=77 Identities=13% Similarity=0.163 Sum_probs=47.4
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
..+.+|||+-||.|+++..+.+. | . ..|+++|+++...+.+...-.. .++...+.+|+.+.. ....+ ...
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~-~-g~V~avD~~~~ml~~l~~~a~~--~~nv~~i~~D~~~~~--~~~~l---~~~ 141 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVE-E-GVVYAVEFAPRPMRELLEVAEE--RKNIIPILADARKPE--RYAHV---VEK 141 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcC-C-CeEEEEECCHHHHHHHHHHhhh--cCCcEEEECCCCCcc--hhhhc---ccc
Confidence 35679999999999999888764 2 1 2489999999765544332111 123335567876421 11111 135
Q ss_pred ccEEEec
Q 011347 432 IDFVICQ 438 (488)
Q Consensus 432 ~DLVIGG 438 (488)
||+|+-.
T Consensus 142 ~D~i~~d 148 (226)
T PRK04266 142 VDVIYQD 148 (226)
T ss_pred CCEEEEC
Confidence 8998843
No 171
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=78.65 E-value=5.4 Score=38.96 Aligned_cols=85 Identities=21% Similarity=0.182 Sum_probs=67.4
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhc--c
Q 011347 352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK--L 429 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~--~ 429 (488)
+..++.||+|=.|.|-++-++-+-|++-..+.++|++++-...+..- .++..++.+|.-++... +.+ -
T Consensus 46 pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~-----~p~~~ii~gda~~l~~~-----l~e~~g 115 (194)
T COG3963 46 PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL-----YPGVNIINGDAFDLRTT-----LGEHKG 115 (194)
T ss_pred cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh-----CCCccccccchhhHHHH-----HhhcCC
Confidence 34678899999999999999999999999999999999977777543 34555777877666532 222 2
Q ss_pred CCccEEEecCCCCCccc
Q 011347 430 GSIDFVICQNSVPQIPN 446 (488)
Q Consensus 430 g~~DLVIGGpPCQ~FS~ 446 (488)
..||.||.|=|--+|+.
T Consensus 116 q~~D~viS~lPll~~P~ 132 (194)
T COG3963 116 QFFDSVISGLPLLNFPM 132 (194)
T ss_pred CeeeeEEeccccccCcH
Confidence 46899999999999985
No 172
>PTZ00146 fibrillarin; Provisional
Probab=78.54 E-value=6.2 Score=40.99 Aligned_cols=80 Identities=20% Similarity=0.216 Sum_probs=46.8
Q ss_pred CCCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccC
Q 011347 352 FPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 430 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g 430 (488)
+..+.+||||-||.|+++.-+-.. |-. -.|++||+++...+-+...- . ..++...+.+|++.- ..+..+ .+
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~-G~VyAVD~s~r~~~dLl~~a-k-~r~NI~~I~~Da~~p--~~y~~~---~~ 201 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPE-GVVYAVEFSHRSGRDLTNMA-K-KRPNIVPIIEDARYP--QKYRML---VP 201 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCC-CEEEEEECcHHHHHHHHHHh-h-hcCCCEEEECCccCh--hhhhcc---cC
Confidence 356789999999999998777654 322 24899999975432222111 0 112333556787642 112111 24
Q ss_pred CccEEEecC
Q 011347 431 SIDFVICQN 439 (488)
Q Consensus 431 ~~DLVIGGp 439 (488)
.||+|+--.
T Consensus 202 ~vDvV~~Dv 210 (293)
T PTZ00146 202 MVDVIFADV 210 (293)
T ss_pred CCCEEEEeC
Confidence 689987665
No 173
>PRK03612 spermidine synthase; Provisional
Probab=78.37 E-value=5 Score=44.32 Aligned_cols=81 Identities=11% Similarity=0.055 Sum_probs=52.1
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHH--hhhcC-----CCCCcceeccccccChhhHHHh
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW--WESSG-----QTGELVQIEDIQALTTKKFESL 425 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~--~~~~n-----~~g~lv~~~DI~~L~~~~Ie~l 425 (488)
+++-+||++-+|.|++...+.+.+ .++.+..||+|+...+..+.+ +...| .+...++.+|..+. +.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~----l~-- 368 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW----LR-- 368 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH----HH--
Confidence 456789999999999887776654 235688999999999988873 22111 11222344555432 11
Q ss_pred hhccCCccEEEecCCC
Q 011347 426 IHKLGSIDFVICQNSV 441 (488)
Q Consensus 426 ~~~~g~~DLVIGGpPC 441 (488)
...+.+|+|+.-+|-
T Consensus 369 -~~~~~fDvIi~D~~~ 383 (521)
T PRK03612 369 -KLAEKFDVIIVDLPD 383 (521)
T ss_pred -hCCCCCCEEEEeCCC
Confidence 112589999998764
No 174
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=77.82 E-value=8.1 Score=41.62 Aligned_cols=82 Identities=16% Similarity=0.086 Sum_probs=52.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+..+||+=||.|.+.+.+-+.. +-..++++|+++.........-...+-....++.+|+..+.. .+ ..+.+|
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~-~~-----~~~s~D 194 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLE-LL-----PSNSVE 194 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhh-hC-----CCCcee
Confidence 45679999999999998887764 223588999998876555443222222223345566654321 11 126799
Q ss_pred EEEecCCCC
Q 011347 434 FVICQNSVP 442 (488)
Q Consensus 434 LVIGGpPCQ 442 (488)
.|+--+|+.
T Consensus 195 ~I~lnFPdP 203 (390)
T PRK14121 195 KIFVHFPVP 203 (390)
T ss_pred EEEEeCCCC
Confidence 998777764
No 175
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=77.03 E-value=5.4 Score=39.72 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=45.9
Q ss_pred CCcccccCCCCChhHHHHHHcCCee--eeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 355 GLTMLSVFSGIGGAEVTLHRLGIKL--KGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~aGi~~--k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
..+|||+=||.|.+...|....-.. ..++++|+++.+.+..+.. .+...+..+|+.++.-. .+.|
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~~lp~~--------~~sf 152 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSHRLPFA--------DQSL 152 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeecccCCCc--------CCce
Confidence 4679999999999988876542111 1378999999987766532 22233556777765421 1468
Q ss_pred cEEEe
Q 011347 433 DFVIC 437 (488)
Q Consensus 433 DLVIG 437 (488)
|+|+.
T Consensus 153 D~I~~ 157 (272)
T PRK11088 153 DAIIR 157 (272)
T ss_pred eEEEE
Confidence 88874
No 176
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=76.68 E-value=10 Score=37.15 Aligned_cols=84 Identities=24% Similarity=0.230 Sum_probs=53.4
Q ss_pred hccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHH
Q 011347 345 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES 424 (488)
Q Consensus 345 lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~ 424 (488)
||.|... .+-.++|+=||+|++++-+-.+|=. --|+|+|-|+.+.+..+.|-.+.+..+..++.+|-- +.|.
T Consensus 27 ls~L~~~--~g~~l~DIGaGtGsi~iE~a~~~p~-~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap----~~L~- 98 (187)
T COG2242 27 LSKLRPR--PGDRLWDIGAGTGSITIEWALAGPS-GRVIAIERDEEALELIERNAARFGVDNLEVVEGDAP----EALP- 98 (187)
T ss_pred HHhhCCC--CCCEEEEeCCCccHHHHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccch----Hhhc-
Confidence 4556532 4567999988888887766666744 347899999999999998876654222223334332 2221
Q ss_pred hhhccCCcc-EEEecC
Q 011347 425 LIHKLGSID-FVICQN 439 (488)
Q Consensus 425 l~~~~g~~D-LVIGGp 439 (488)
....+| +.|||.
T Consensus 99 ---~~~~~daiFIGGg 111 (187)
T COG2242 99 ---DLPSPDAIFIGGG 111 (187)
T ss_pred ---CCCCCCEEEECCC
Confidence 223577 566776
No 177
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=75.68 E-value=9.7 Score=36.94 Aligned_cols=82 Identities=12% Similarity=0.076 Sum_probs=52.3
Q ss_pred CCCCcccccCCCCChhHHHHHHcC-CeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLG 430 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aG-i~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g 430 (488)
+.+.+|||+=||.|.+...+-+.. .+-..++++|+++......+........ ....++.+|+.++.. +
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------~ 121 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI----------K 121 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC----------C
Confidence 456789999999999988776542 1112478999999888777765433211 112355677766541 3
Q ss_pred CccEEEecCCCCCc
Q 011347 431 SIDFVICQNSVPQI 444 (488)
Q Consensus 431 ~~DLVIGGpPCQ~F 444 (488)
++|+|+.....+-+
T Consensus 122 ~~d~v~~~~~l~~~ 135 (239)
T TIGR00740 122 NASMVILNFTLQFL 135 (239)
T ss_pred CCCEEeeecchhhC
Confidence 56777766654443
No 178
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=75.26 E-value=1.1 Score=44.18 Aligned_cols=15 Identities=40% Similarity=0.813 Sum_probs=13.2
Q ss_pred CCCcccccCCCCChh
Q 011347 354 GGLTMLSVFSGIGGA 368 (488)
Q Consensus 354 ~~itVLDLFSGiGGl 368 (488)
+.+.-||+||||||+
T Consensus 188 ~~LaTLDIFAGCGGL 202 (202)
T cd04708 188 NRLATLDIFAGCGGL 202 (202)
T ss_pred cccceeeeecccCCC
Confidence 567889999999996
No 179
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=74.40 E-value=9 Score=36.40 Aligned_cols=42 Identities=14% Similarity=0.113 Sum_probs=30.8
Q ss_pred cccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHh
Q 011347 357 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 399 (488)
Q Consensus 357 tVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~ 399 (488)
+|||+=||.|++...+-+..-.. .+.++|+++......+...
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~-~v~gid~s~~~~~~a~~~~ 43 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHL-QLHGYTISPEQAEVGRERI 43 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHH
Confidence 58999999999887776543122 3678999998877666544
No 180
>PLN02476 O-methyltransferase
Probab=74.29 E-value=11 Score=38.78 Aligned_cols=92 Identities=17% Similarity=0.221 Sum_probs=56.8
Q ss_pred hhhccccccCCCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChh
Q 011347 343 YHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTK 420 (488)
Q Consensus 343 ~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~ 420 (488)
.+|+.|-... +.-+||++.+|+|..++.+-.+ +=. -.++++|+++...+..+.+|...+... ..++.+|..+
T Consensus 108 ~lL~~L~~~~-~ak~VLEIGT~tGySal~lA~al~~~-G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e---- 181 (278)
T PLN02476 108 QLLAMLVQIL-GAERCIEVGVYTGYSSLAVALVLPES-GCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE---- 181 (278)
T ss_pred HHHHHHHHhc-CCCeEEEecCCCCHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH----
Confidence 3344443333 3568999999999988877652 211 137899999999999999998765432 1233455433
Q ss_pred hHHHhhhc--cCCccEEEecCC
Q 011347 421 KFESLIHK--LGSIDFVICQNS 440 (488)
Q Consensus 421 ~Ie~l~~~--~g~~DLVIGGpP 440 (488)
.|+++... .+.||+|+=..+
T Consensus 182 ~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 182 SLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred HHHHHHhcccCCCCCEEEECCC
Confidence 23333211 257897765543
No 181
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=73.79 E-value=6.5 Score=38.92 Aligned_cols=71 Identities=24% Similarity=0.414 Sum_probs=50.4
Q ss_pred CCCCCcccccCCCCChhHH-HHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccC
Q 011347 352 FPGGLTMLSVFSGIGGAEV-TLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 430 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlsl-GL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g 430 (488)
|..+.+||||-|--||-+. +.+.+|=..+ |++||+.+.. ..++...+.+||+.-+. ++.+....+
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~-ivavDi~p~~-----------~~~~V~~iq~d~~~~~~--~~~l~~~l~ 108 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGK-IVAVDILPMK-----------PIPGVIFLQGDITDEDT--LEKLLEALG 108 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCc-EEEEECcccc-----------cCCCceEEeeeccCccH--HHHHHHHcC
Confidence 5578999999999999986 6667775433 7899999984 35566778899986543 333333333
Q ss_pred --CccEEE
Q 011347 431 --SIDFVI 436 (488)
Q Consensus 431 --~~DLVI 436 (488)
.+|+|+
T Consensus 109 ~~~~DvV~ 116 (205)
T COG0293 109 GAPVDVVL 116 (205)
T ss_pred CCCcceEE
Confidence 369887
No 182
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=73.72 E-value=5.6 Score=39.45 Aligned_cols=81 Identities=21% Similarity=0.225 Sum_probs=53.0
Q ss_pred CcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCccE
Q 011347 356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDF 434 (488)
Q Consensus 356 itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~DL 434 (488)
-+||||=||-|-+-..|++-||+-+ +++||.++.|....+..-+...... .-++..||.+= +. ..+++||
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~-L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~--~~------~~~qfdl 139 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSK-LTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP--DF------LSGQFDL 139 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCC-ccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC--cc------cccceeE
Confidence 3899999999999999999999754 7899999998876443222221222 22456777642 21 1267888
Q ss_pred EEecCCCCCcc
Q 011347 435 VICQNSVPQIP 445 (488)
Q Consensus 435 VIGGpPCQ~FS 445 (488)
|.-=----..|
T Consensus 140 vlDKGT~DAis 150 (227)
T KOG1271|consen 140 VLDKGTLDAIS 150 (227)
T ss_pred EeecCceeeee
Confidence 86433333334
No 183
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=73.43 E-value=3.7 Score=40.86 Aligned_cols=79 Identities=15% Similarity=0.186 Sum_probs=54.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+||||-||.|=.+++--++|-. -|++.|+++.+....+.| .+..+.. |.-+..+ ++...+.+|
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~--~v~a~d~~P~~~~ai~lN---a~angv~-----i~~~~~d----~~g~~~~~D 144 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAA--EVVAADIDPWLEQAIRLN---AAANGVS-----ILFTHAD----LIGSPPAFD 144 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhH--HHHhcCCChHHHHHhhcc---hhhccce-----eEEeecc----ccCCCccee
Confidence 5789999999999999999999975 488999999988877653 2233322 1111111 112346788
Q ss_pred EEEecCCCCCccc
Q 011347 434 FVICQNSVPQIPN 446 (488)
Q Consensus 434 LVIGGpPCQ~FS~ 446 (488)
||+-|-=|=+-+-
T Consensus 145 l~LagDlfy~~~~ 157 (218)
T COG3897 145 LLLAGDLFYNHTE 157 (218)
T ss_pred EEEeeceecCchH
Confidence 8888877766553
No 184
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=71.96 E-value=9.2 Score=40.64 Aligned_cols=41 Identities=20% Similarity=0.429 Sum_probs=32.6
Q ss_pred CCCcccccCCCCChhHHHHHH-cCCeeeeEEEeeCCHHHHHHHHH
Q 011347 354 GGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKR 397 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~-aGi~~k~vvsVEid~~a~~t~~~ 397 (488)
.+.+|||+=||.|++..-+.+ .|.+ |+++|+++......+.
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~g~~---V~giDlS~~~l~~A~~ 208 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHYGVS---VVGVTISAEQQKLAQE 208 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHCCCE---EEEEeCCHHHHHHHHH
Confidence 567899999999999876665 4653 6889999998776654
No 185
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=71.46 E-value=9.3 Score=39.62 Aligned_cols=78 Identities=13% Similarity=0.047 Sum_probs=48.4
Q ss_pred CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347 355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 434 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL 434 (488)
+-++||.=||.||.+.++-+..=+--.|+++|+|+.+....+..... .....++.+|..++.. .++. ..+.+|.
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~-~l~~---~~~~vDg 93 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKE-VLAE---GLGKVDG 93 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHH-HHHc---CCCccCE
Confidence 45799999999999999877631112488999999998877653221 1112245566665531 1111 1236888
Q ss_pred EEec
Q 011347 435 VICQ 438 (488)
Q Consensus 435 VIGG 438 (488)
|+-=
T Consensus 94 Il~D 97 (296)
T PRK00050 94 ILLD 97 (296)
T ss_pred EEEC
Confidence 7743
No 186
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=69.98 E-value=18 Score=37.69 Aligned_cols=38 Identities=24% Similarity=0.205 Sum_probs=31.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHH
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR 393 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~ 393 (488)
.+-+|||+=||.|.+...+...|.. .|+++|.++....
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~ 158 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLC 158 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHH
Confidence 3568999999999999998888863 4789999996543
No 187
>PLN02366 spermidine synthase
Probab=69.74 E-value=11 Score=38.99 Aligned_cols=80 Identities=18% Similarity=0.215 Sum_probs=51.0
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcC----CCCCcceeccccccChhhHHHhhhc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHK 428 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n----~~g~lv~~~DI~~L~~~~Ie~l~~~ 428 (488)
++.-+||++=+|.||+...+.+.. .+..|..||||+...+..+.++...+ .+...++.+|-.+.- ++. .
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l----~~~--~ 162 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFL----KNA--P 162 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHH----hhc--c
Confidence 456789999999999887777652 34567889999998888888765321 112224445543221 110 0
Q ss_pred cCCccEEEecC
Q 011347 429 LGSIDFVICQN 439 (488)
Q Consensus 429 ~g~~DLVIGGp 439 (488)
.+.+|+|+.-.
T Consensus 163 ~~~yDvIi~D~ 173 (308)
T PLN02366 163 EGTYDAIIVDS 173 (308)
T ss_pred CCCCCEEEEcC
Confidence 24699998743
No 188
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=68.50 E-value=12 Score=32.83 Aligned_cols=44 Identities=23% Similarity=0.250 Sum_probs=37.0
Q ss_pred cccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhh
Q 011347 357 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 401 (488)
Q Consensus 357 tVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~ 401 (488)
++||+-||.|-.++.+.+.|-.. .++++|.++.+...++.+...
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~-~v~~~E~~~~~~~~l~~~~~~ 44 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEG-RVIAFEPLPDAYEILEENVKL 44 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCC-EEEEEecCHHHHHHHHHHHHH
Confidence 58999999999999999887542 578999999999988887653
No 189
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=68.00 E-value=12 Score=38.09 Aligned_cols=45 Identities=22% Similarity=0.271 Sum_probs=29.7
Q ss_pred CCCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHh
Q 011347 352 FPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWW 399 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~ 399 (488)
...|.+|||+=||-||+..-+.+. |.+ |.++.+++.-.+-.+..-
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g~~---v~gitlS~~Q~~~a~~~~ 105 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYGCH---VTGITLSEEQAEYARERI 105 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--E---EEEEES-HHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCcE---EEEEECCHHHHHHHHHHH
Confidence 346889999999999999877666 864 678899988766555433
No 190
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=67.62 E-value=13 Score=39.85 Aligned_cols=42 Identities=24% Similarity=0.359 Sum_probs=32.5
Q ss_pred CCCCcccccCCCCChhHHHHHH-cCCeeeeEEEeeCCHHHHHHHHH
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKR 397 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~-aGi~~k~vvsVEid~~a~~t~~~ 397 (488)
..+.+|||+=||.|++...|.+ .|. .++++|+++.+....+.
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvDiS~~~l~~A~~ 307 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDV---HVVGIDLSVNMISFALE 307 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHH
Confidence 3567899999999998877765 354 37899999988766554
No 191
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=64.79 E-value=16 Score=38.54 Aligned_cols=72 Identities=15% Similarity=0.067 Sum_probs=45.2
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+.+||||=||.|.+...+.+. +- ..+.++|+++...+..+..... .+..++.+|+.++.- .-+.|
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~---~~i~~i~gD~e~lp~--------~~~sF 179 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPL---KECKIIEGDAEDLPF--------PTDYA 179 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhc---cCCeEEeccHHhCCC--------CCCce
Confidence 4678999999999988877543 21 2477899999876665543221 122244566654431 11468
Q ss_pred cEEEec
Q 011347 433 DFVICQ 438 (488)
Q Consensus 433 DLVIGG 438 (488)
|+|+..
T Consensus 180 DvVIs~ 185 (340)
T PLN02490 180 DRYVSA 185 (340)
T ss_pred eEEEEc
Confidence 888764
No 192
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=64.25 E-value=21 Score=37.38 Aligned_cols=84 Identities=21% Similarity=0.211 Sum_probs=58.5
Q ss_pred cccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCc-ceeccccccChhhHHHhhh
Q 011347 349 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIH 427 (488)
Q Consensus 349 K~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~l-v~~~DI~~L~~~~Ie~l~~ 427 (488)
+.-...+-.||+.=-|.|-++..|-++| +.|+|||+|+.-..-+++-...+...+.+ ++.+|.-+.+
T Consensus 53 ka~~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d--------- 120 (315)
T KOG0820|consen 53 KADLKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD--------- 120 (315)
T ss_pred ccCCCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC---------
Confidence 3334456779999999999999999999 45899999999877776644333211222 4567776554
Q ss_pred ccCCccEEEecCCCCCcc
Q 011347 428 KLGSIDFVICQNSVPQIP 445 (488)
Q Consensus 428 ~~g~~DLVIGGpPCQ~FS 445 (488)
+.-||++|---|-|=-|
T Consensus 121 -~P~fd~cVsNlPyqISS 137 (315)
T KOG0820|consen 121 -LPRFDGCVSNLPYQISS 137 (315)
T ss_pred -CcccceeeccCCccccC
Confidence 24588888877777444
No 193
>PRK04457 spermidine synthase; Provisional
Probab=64.17 E-value=13 Score=37.37 Aligned_cols=76 Identities=12% Similarity=-0.001 Sum_probs=48.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcC-CCCCcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-QTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n-~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+-+||+|=+|.|.+...+.+.- +-..+.+||+|+...+..+.++.... .+...++.+|..+.- .. ..+.+
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l----~~---~~~~y 137 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYI----AV---HRHST 137 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHH----Hh---CCCCC
Confidence 34579999888888887775542 11237889999999998888764321 122234556665431 11 12479
Q ss_pred cEEEe
Q 011347 433 DFVIC 437 (488)
Q Consensus 433 DLVIG 437 (488)
|+|+-
T Consensus 138 D~I~~ 142 (262)
T PRK04457 138 DVILV 142 (262)
T ss_pred CEEEE
Confidence 99884
No 194
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=63.78 E-value=23 Score=33.16 Aligned_cols=82 Identities=21% Similarity=0.288 Sum_probs=43.1
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccCh-hhHHHhhhcc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTT-KKFESLIHKL 429 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~-~~Ie~l~~~~ 429 (488)
-.+.+||+|=||+|=..+.+..+ |- ..|+.-|.++ +...++.+-..++. ....+ .+..++= +.+.......
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~--~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v---~v~~L~Wg~~~~~~~~~~ 117 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGA--ARVVLTDYNE-VLELLRRNIELNGSLLDGRV---SVRPLDWGDELDSDLLEP 117 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T---SEEEEEE-S--HHHHHHHHHHTT-----------EEEE--TTS-HHHHHHS-
T ss_pred cCCceEEEECCccchhHHHHHhccCC--ceEEEeccch-hhHHHHHHHHhccccccccc---cCcEEEecCccccccccc
Confidence 35689999999999777777777 43 3477899999 77777776443210 11111 2333321 1121111123
Q ss_pred CCccEEEecCC
Q 011347 430 GSIDFVICQNS 440 (488)
Q Consensus 430 g~~DLVIGGpP 440 (488)
+.||+|+|.==
T Consensus 118 ~~~D~IlasDv 128 (173)
T PF10294_consen 118 HSFDVILASDV 128 (173)
T ss_dssp SSBSEEEEES-
T ss_pred ccCCEEEEecc
Confidence 57999998753
No 195
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=62.83 E-value=14 Score=36.53 Aligned_cols=69 Identities=14% Similarity=0.137 Sum_probs=42.1
Q ss_pred CcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEE
Q 011347 356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV 435 (488)
Q Consensus 356 itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLV 435 (488)
-++|++=||+|-++..|.... .-+.++|+++.|...-+.-- ...+..-++..||.+..+. +.||||
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl--~~~~~V~~~~~dvp~~~P~---------~~FDLI 110 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERL--AGLPHVEWIQADVPEFWPE---------GRFDLI 110 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHT--TT-SSEEEEES-TTT---S---------S-EEEE
T ss_pred ceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhc--CCCCCeEEEECcCCCCCCC---------CCeeEE
Confidence 358999999999999987664 56889999999987776522 1223333556777554322 578888
Q ss_pred Eec
Q 011347 436 ICQ 438 (488)
Q Consensus 436 IGG 438 (488)
+-.
T Consensus 111 V~S 113 (201)
T PF05401_consen 111 VLS 113 (201)
T ss_dssp EEE
T ss_pred EEe
Confidence 744
No 196
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=61.76 E-value=23 Score=38.16 Aligned_cols=128 Identities=13% Similarity=0.058 Sum_probs=81.3
Q ss_pred hHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCee-e--eE
Q 011347 306 HIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKL-K--GV 382 (488)
Q Consensus 306 E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~-k--~v 382 (488)
.++++.+|=..=|-++++.+.+-...| ++++-. ...+-+|||+.|--||=+..|.++...- . .|
T Consensus 120 ~l~rf~~fl~~e~~vg~i~rqeavSml------PvL~L~-------v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~v 186 (375)
T KOG2198|consen 120 PLSRFHGFLKLETGVGNIYRQEAVSML------PVLALG-------VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYV 186 (375)
T ss_pred chhhcchHhhhhcccccchhhhhhhcc------chhhcc-------cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCee
Confidence 567777777778888888877766333 222211 1246789999999999999998887631 1 47
Q ss_pred EEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhh-hccCCccEEEecCCCCCccc
Q 011347 383 ISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI-HKLGSIDFVICQNSVPQIPN 446 (488)
Q Consensus 383 vsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~-~~~g~~DLVIGGpPCQ~FS~ 446 (488)
++.|+|..-.+.+..--...+.+...+...|++......+...- ...-.||=|..--||.+=+.
T Consensus 187 vaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt 251 (375)
T KOG2198|consen 187 VANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGT 251 (375)
T ss_pred EecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhhhhhcceeEEecccCCCcc
Confidence 89999998666665422223333333445566555443221000 02236899999999998864
No 197
>PLN03075 nicotianamine synthase; Provisional
Probab=60.89 E-value=44 Score=34.84 Aligned_cols=77 Identities=13% Similarity=0.074 Sum_probs=47.3
Q ss_pred CCCcccccCCCCChhHHHHHHcC-CeeeeEEEeeCCHHHHHHHHHHhhh-cCCC-CCcceeccccccChhhHHHhhhccC
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWWES-SGQT-GELVQIEDIQALTTKKFESLIHKLG 430 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aG-i~~k~vvsVEid~~a~~t~~~~~~~-~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g 430 (488)
.+-+|+++=||-||++.-+-.++ ++--.+..+|+|+.+...-+.+... .... ...+..+|+.++.. ..+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~--------~l~ 194 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE--------SLK 194 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc--------ccC
Confidence 44679999899888765443322 1222477899999998877776532 2111 23345577765432 135
Q ss_pred CccEEEec
Q 011347 431 SIDFVICQ 438 (488)
Q Consensus 431 ~~DLVIGG 438 (488)
+||+|+-=
T Consensus 195 ~FDlVF~~ 202 (296)
T PLN03075 195 EYDVVFLA 202 (296)
T ss_pred CcCEEEEe
Confidence 79998743
No 198
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=58.81 E-value=24 Score=36.62 Aligned_cols=64 Identities=20% Similarity=0.396 Sum_probs=40.3
Q ss_pred CCCCCcccccCCCCChhHH-HHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccC
Q 011347 352 FPGGLTMLSVFSGIGGAEV-TLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALT 418 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlsl-GL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~ 418 (488)
...|++|||+=||-||+.+ +.++-|.+ |+++.+|+.-..-.+.--...+-. ...+...|.+++.
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~---V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~ 135 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYGVT---VVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE 135 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcCCE---EEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc
Confidence 4579999999999999875 44445753 689999998766555422222111 1224456665554
No 199
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=58.63 E-value=26 Score=35.78 Aligned_cols=87 Identities=9% Similarity=-0.057 Sum_probs=52.1
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCC--cceeccccccChhhHHHhhhcc-
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE--LVQIEDIQALTTKKFESLIHKL- 429 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~--lv~~~DI~~L~~~~Ie~l~~~~- 429 (488)
+.+.+||||=||.|-.+..|-+++-+...++++|+++......+...... .++. ..+.+|+.+.- .+ ....
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~-~p~~~v~~i~gD~~~~~--~~---~~~~~ 135 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD-YPQLEVHGICADFTQPL--AL---PPEPA 135 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh-CCCceEEEEEEcccchh--hh---hcccc
Confidence 34578999999999999888877421124789999998654443322111 1222 13467776421 11 1111
Q ss_pred -CCccEEEecCCCCCcc
Q 011347 430 -GSIDFVICQNSVPQIP 445 (488)
Q Consensus 430 -g~~DLVIGGpPCQ~FS 445 (488)
+...+++-|+++..|+
T Consensus 136 ~~~~~~~~~gs~~~~~~ 152 (301)
T TIGR03438 136 AGRRLGFFPGSTIGNFT 152 (301)
T ss_pred cCCeEEEEecccccCCC
Confidence 2455777788877776
No 200
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=58.39 E-value=22 Score=38.35 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=34.4
Q ss_pred CCcccccCCCCC--hhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhh
Q 011347 355 GLTMLSVFSGIG--GAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 400 (488)
Q Consensus 355 ~itVLDLFSGiG--GlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~ 400 (488)
..+|+|-|||.| |..++++--.. .|+..||++.|.++.+.|-.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~---~v~lNDisp~Avelik~Nv~ 97 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVV---KVVLNDISPKAVELIKENVR 97 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCcc---EEEEccCCHHHHHHHHHHHH
Confidence 588999999888 88887665332 47889999999999988653
No 201
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=56.94 E-value=5.8 Score=44.20 Aligned_cols=61 Identities=30% Similarity=0.317 Sum_probs=41.9
Q ss_pred hhhcccCcchh--hhccccccC--CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHH
Q 011347 333 RHCFQTDTLGY--HLSVLKSMF--PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK 396 (488)
Q Consensus 333 gnsfqvdti~~--~lsvLK~~f--p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~ 396 (488)
+..||++|-+. +.++..++- +.+-.++|+|||.|-+++++.+- ++-|.+||+++.+..-.+
T Consensus 358 ~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~ 422 (534)
T KOG2187|consen 358 GAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAE 422 (534)
T ss_pred chhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhh
Confidence 34567766443 244444422 45567899999999999998763 345899999999875443
No 202
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=56.42 E-value=18 Score=36.95 Aligned_cols=73 Identities=23% Similarity=0.358 Sum_probs=43.0
Q ss_pred CCCCC-hhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhh----ccCCccEEE
Q 011347 362 FSGIG-GAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH----KLGSIDFVI 436 (488)
Q Consensus 362 FSGiG-GlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~----~~g~~DLVI 436 (488)
++||| -++.+|-..|+.+ ++++-+..+.+...............++.-|+++ ..+++..++ .+|-+|++|
T Consensus 14 agGIGl~~sk~Ll~kgik~---~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~--~~~~~~~f~ki~~~fg~iDIlI 88 (261)
T KOG4169|consen 14 AGGIGLATSKALLEKGIKV---LVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTN--RGDLEAAFDKILATFGTIDILI 88 (261)
T ss_pred CchhhHHHHHHHHHcCchh---eeehhhhhCHHHHHHHhccCCCceEEEEEecccc--HHHHHHHHHHHHHHhCceEEEE
Confidence 34444 2356677889864 3445554444444433333333445567789987 455555443 579999999
Q ss_pred ecC
Q 011347 437 CQN 439 (488)
Q Consensus 437 GGp 439 (488)
-|.
T Consensus 89 NgA 91 (261)
T KOG4169|consen 89 NGA 91 (261)
T ss_pred ccc
Confidence 765
No 203
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=55.29 E-value=25 Score=34.87 Aligned_cols=88 Identities=15% Similarity=0.072 Sum_probs=53.3
Q ss_pred hccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHH-HHHHhhhcCCCCCcceeccccccChhhHH
Q 011347 345 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRI-LKRWWESSGQTGELVQIEDIQALTTKKFE 423 (488)
Q Consensus 345 lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t-~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie 423 (488)
..-|+.++| .-++++=||.|-.+.-|.+.=.+....++.|||+.|+++ +++-- .| +.+ |.-+-.+ +.
T Consensus 36 ~~eL~~~~~--~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~--~n--~~~-----~~~V~td-l~ 103 (209)
T KOG3191|consen 36 AAELKGHNP--EICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETAR--CN--RVH-----IDVVRTD-LL 103 (209)
T ss_pred HHHHhhcCc--eeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHH--hc--CCc-----cceeehh-HH
Confidence 344555543 558999999999888876543345568899999999875 33321 11 111 1112221 21
Q ss_pred HhhhccCCccEEEecCCCCCcc
Q 011347 424 SLIHKLGSIDFVICQNSVPQIP 445 (488)
Q Consensus 424 ~l~~~~g~~DLVIGGpPCQ~FS 445 (488)
.-+ +.+++|+++--||=-+-+
T Consensus 104 ~~l-~~~~VDvLvfNPPYVpt~ 124 (209)
T KOG3191|consen 104 SGL-RNESVDVLVFNPPYVPTS 124 (209)
T ss_pred hhh-ccCCccEEEECCCcCcCC
Confidence 111 237999999999855544
No 204
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=54.87 E-value=46 Score=35.34 Aligned_cols=128 Identities=12% Similarity=0.198 Sum_probs=67.6
Q ss_pred hhhHHHHhcCCCCCccccCCChHHHH-HhhhhhcccCc--------chh-------hhccccccCCCCCcccccCCCC--
Q 011347 304 PEHIELILGYPSNHTQAAGNSLTARL-ESLRHCFQTDT--------LGY-------HLSVLKSMFPGGLTMLSVFSGI-- 365 (488)
Q Consensus 304 ~~E~E~i~GfP~~~T~~~~l~~teR~-k~Lgnsfqvdt--------i~~-------~lsvLK~~fp~~itVLDLFSGi-- 365 (488)
...||+-||-|.-+....++..+++. +.|...+..+. +.. -+...+..+ .+.+|. ++.+.
T Consensus 221 a~~L~~~fGip~~~~~p~G~~~t~~~l~~ia~~~g~~~~~~~~~~~i~~e~~~~~~~l~~~~~~l-~gkrv~-i~~~~~~ 298 (410)
T cd01968 221 ARKMEEKYGIPYIEVSFYGIRDTSKSLRNIAELLGDEELIERTEELIAREEARLRPELAPYRARL-EGKKAA-LYTGGVK 298 (410)
T ss_pred HHHHHHHhCCCeEecCcCcHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCEEE-EEcCCch
Confidence 77899999999877655677777554 66766665431 111 111222222 344443 34332
Q ss_pred -ChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEEEecCCCC
Q 011347 366 -GGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP 442 (488)
Q Consensus 366 -GGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ 442 (488)
-++...|+.+|+++..+.+-..++...+-++.. .+...++. .+.+..++++.+.. .++||++|++=..
T Consensus 299 ~~~la~~l~elGm~v~~~~~~~~~~~~~~~~~~~-----~~~~~~v~---~~~~~~e~~~~i~~-~~pDl~ig~s~~~ 367 (410)
T cd01968 299 SWSLVSALQDLGMEVVATGTQKGTKEDYERIKEL-----LGEGTVIV---DDANPRELKKLLKE-KKADLLVAGGKER 367 (410)
T ss_pred HHHHHHHHHHCCCEEEEEecccCCHHHHHHHHHH-----hCCCcEEE---eCCCHHHHHHHHhh-cCCCEEEECCcch
Confidence 356667889999875554334444332222221 11111222 23444455544432 3699999985443
No 205
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=52.81 E-value=29 Score=37.14 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=33.2
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHH
Q 011347 352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR 393 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~ 393 (488)
+..+.++|||=|+.||++.-|-+.|.. |++||..+.+-.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~---V~AVD~g~l~~~ 247 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGMF---VTAVDNGPMAQS 247 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCCE---EEEEechhcCHh
Confidence 457889999999999999999999973 789998877643
No 206
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.24 E-value=38 Score=34.39 Aligned_cols=96 Identities=23% Similarity=0.267 Sum_probs=59.2
Q ss_pred CCcccccCCCCChhHHHHH--HcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhc--cC
Q 011347 355 GLTMLSVFSGIGGAEVTLH--RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK--LG 430 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~--~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~--~g 430 (488)
..-.|-.|+|.+-+..|+. .-| .|+++|+|+.+-++....+... |+.-.+.=|..-.-+.|.+++.+ .+
T Consensus 76 ~~lelGvfTGySaL~~Alalp~dG----rv~a~eid~~~~~~~~~~~k~a---gv~~KI~~i~g~a~esLd~l~~~~~~~ 148 (237)
T KOG1663|consen 76 RTLELGVFTGYSALAVALALPEDG----RVVAIEIDADAYEIGLELVKLA---GVDHKITFIEGPALESLDELLADGESG 148 (237)
T ss_pred eEEEEecccCHHHHHHHHhcCCCc----eEEEEecChHHHHHhHHHHHhc---cccceeeeeecchhhhHHHHHhcCCCC
Confidence 3334556999999888876 444 3789999999988887776544 32211222333334556666654 46
Q ss_pred CccEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhc
Q 011347 431 SIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRS 485 (488)
Q Consensus 431 ~~DLVIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~ 485 (488)
.||.++= -.|.++.. ..|.|.|+.+|+
T Consensus 149 tfDfaFv---------------------------DadK~nY~-~y~e~~l~Llr~ 175 (237)
T KOG1663|consen 149 TFDFAFV---------------------------DADKDNYS-NYYERLLRLLRV 175 (237)
T ss_pred ceeEEEE---------------------------ccchHHHH-HHHHHHHhhccc
Confidence 6666640 12455554 777788887764
No 207
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=48.48 E-value=15 Score=29.41 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=18.6
Q ss_pred hhhHHhcCCCHHHHHHHHHHhCCCC
Q 011347 4 TLQLLEMGFSENQVSLAIEKFGSKT 28 (488)
Q Consensus 4 ~~~l~~mgf~~~e~~~ai~~~g~~~ 28 (488)
..++++|||+.+-+-.|+.|.|.+.
T Consensus 13 Vd~F~~mGF~~dkVvevlrrlgik~ 37 (55)
T PF09288_consen 13 VDQFENMGFERDKVVEVLRRLGIKS 37 (55)
T ss_dssp HHHHHHHT--HHHHHHHHHHS--SS
T ss_pred HHHHHHcCCcHHHHHHHHHHhCCCC
Confidence 3578999999999999999999875
No 208
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=48.28 E-value=85 Score=34.00 Aligned_cols=131 Identities=14% Similarity=0.190 Sum_probs=69.6
Q ss_pred hhhHHHHhcCCCCCccccCCChHHHH-HhhhhhcccCc--------c----hhhhccccc---cCCCCCcccccCCCCC-
Q 011347 304 PEHIELILGYPSNHTQAAGNSLTARL-ESLRHCFQTDT--------L----GYHLSVLKS---MFPGGLTMLSVFSGIG- 366 (488)
Q Consensus 304 ~~E~E~i~GfP~~~T~~~~l~~teR~-k~Lgnsfqvdt--------i----~~~lsvLK~---~fp~~itVLDLFSGiG- 366 (488)
...||+-||-|.-.....|+..|++. +.|+..+..+. + +.....|.+ .+ .+.+|. +|.|..
T Consensus 260 a~~L~e~~GiP~~~~~~~G~~~T~~~L~~Ia~~lg~~~~~~~~~~~i~~e~~~~~~~l~~~~~~L-~Gkrv~-i~~g~~~ 337 (456)
T TIGR01283 260 ARKMEEKYGIPYFEGSFYGIEDTSKALRDIADLFGDEELLKRTEELIAREEAKIRPALEPYRERL-KGKKAA-IYTGGVK 337 (456)
T ss_pred HHHHHHHcCCCEEecCCCcHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCEEE-EEcCCch
Confidence 77899999999766655677777554 77777665331 1 111222222 22 345552 344421
Q ss_pred --hhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEEEecCCCCCc
Q 011347 367 --GAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQI 444 (488)
Q Consensus 367 --GlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ~F 444 (488)
++...|..+|+++..+..-...+.....++.. .....++..| -+..++++.+.+ .++||++|++....+
T Consensus 338 ~~~l~~~l~elGmevv~~~t~~~~~~d~~~l~~~-----~~~~~~v~~~---~d~~e~~~~i~~-~~pDl~ig~~~~~~~ 408 (456)
T TIGR01283 338 SWSLVSALQDLGMEVVATGTQKGTEEDYARIREL-----MGEGTVMLDD---ANPRELLKLLLE-YKADLLIAGGKERYT 408 (456)
T ss_pred HHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHH-----cCCCeEEEeC---CCHHHHHHHHhh-cCCCEEEEccchHHH
Confidence 34455789999875543334444433333221 1112222222 344555554433 369999998766555
Q ss_pred c
Q 011347 445 P 445 (488)
Q Consensus 445 S 445 (488)
+
T Consensus 409 a 409 (456)
T TIGR01283 409 A 409 (456)
T ss_pred H
Confidence 4
No 209
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=45.36 E-value=1e+02 Score=33.75 Aligned_cols=128 Identities=13% Similarity=0.212 Sum_probs=69.8
Q ss_pred hhhHHHHhcCCCCCccccCCChHHHH-Hhhhhhc---ccCc----------------chhhhccccccCCCCCcccccCC
Q 011347 304 PEHIELILGYPSNHTQAAGNSLTARL-ESLRHCF---QTDT----------------LGYHLSVLKSMFPGGLTMLSVFS 363 (488)
Q Consensus 304 ~~E~E~i~GfP~~~T~~~~l~~teR~-k~Lgnsf---qvdt----------------i~~~lsvLK~~fp~~itVLDLFS 363 (488)
...||.-||-|--+....++..|++. +.|...+ ..+. +...+...+.++ .+.+| -+|.
T Consensus 254 A~~L~erfGiP~~~~~p~G~~~T~~~l~~la~~~~~~~~~~~~~~~~e~~i~~e~~~~~~~l~~~~~~l-~Gk~v-aI~~ 331 (475)
T PRK14478 254 ARKMEERYGIPFFEGSFYGIEDTSDSLRQIARLLVERGADAELVERTEALIAEEEAKAWAALEPYRPRL-EGKRV-LLYT 331 (475)
T ss_pred HHHHHHHhCCCEEecCCCcHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCEE-EEEc
Confidence 78899999999876655578777655 6776666 2221 111122233333 33444 2233
Q ss_pred CCC---hhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEEEecCC
Q 011347 364 GIG---GAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNS 440 (488)
Q Consensus 364 GiG---GlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpP 440 (488)
|.. ++...|..+|+++..+..-...+...+.++... ..+ .++.+| .+..++.+.+.+ .++||++|++-
T Consensus 332 ~~~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~~----~~~-~~v~~d---~~~~e~~~~i~~-~~pDliig~s~ 402 (475)
T PRK14478 332 GGVKSWSVVKALQELGMEVVGTSVKKSTDEDKERIKELM----GPD-AHMIDD---ANPRELYKMLKE-AKADIMLSGGR 402 (475)
T ss_pred CCchHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHc----CCC-cEEEeC---CCHHHHHHHHhh-cCCCEEEecCc
Confidence 321 344557899999876665555554433443211 112 233333 344555554433 46999999864
Q ss_pred CC
Q 011347 441 VP 442 (488)
Q Consensus 441 CQ 442 (488)
-.
T Consensus 403 ~~ 404 (475)
T PRK14478 403 SQ 404 (475)
T ss_pred hh
Confidence 43
No 210
>PRK01581 speE spermidine synthase; Validated
Probab=43.96 E-value=53 Score=35.45 Aligned_cols=80 Identities=13% Similarity=0.006 Sum_probs=48.0
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHh-----hhc--CCCCCcceeccccccChhhHHHh
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW-----ESS--GQTGELVQIEDIQALTTKKFESL 425 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~-----~~~--n~~g~lv~~~DI~~L~~~~Ie~l 425 (488)
++.-+||.|=+|.|++...+-+.+ .++.|..||||+...+..+.+. .+. ..+...++.+|..+.- .
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL----~-- 221 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFL----S-- 221 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHH----H--
Confidence 455689999888887655555433 2456889999999888777521 111 1112223445554321 1
Q ss_pred hhccCCccEEEecCC
Q 011347 426 IHKLGSIDFVICQNS 440 (488)
Q Consensus 426 ~~~~g~~DLVIGGpP 440 (488)
...+.+|+|+.-.|
T Consensus 222 -~~~~~YDVIIvDl~ 235 (374)
T PRK01581 222 -SPSSLYDVIIIDFP 235 (374)
T ss_pred -hcCCCccEEEEcCC
Confidence 12357999998754
No 211
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=43.60 E-value=20 Score=39.56 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=38.4
Q ss_pred ccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHH
Q 011347 350 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 398 (488)
Q Consensus 350 ~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~ 398 (488)
.+|.-|-.|-|+|||+|=+++-+-.-| ..|++.|.++...+.++.+
T Consensus 245 g~fk~gevv~D~FaGvGPfa~Pa~kK~---crV~aNDLNpesik~Lk~n 290 (495)
T KOG2078|consen 245 GLFKPGEVVCDVFAGVGPFALPAAKKG---CRVYANDLNPESIKWLKAN 290 (495)
T ss_pred hccCCcchhhhhhcCcCccccchhhcC---cEEEecCCCHHHHHHHHHh
Confidence 367778889999999999988777766 4589999999998888763
No 212
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=43.17 E-value=35 Score=33.66 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=37.9
Q ss_pred cccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHh
Q 011347 349 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 399 (488)
Q Consensus 349 K~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~ 399 (488)
+.+-..+-.|||-|+|.|-..++..++|-. .+++|+++........-+
T Consensus 217 ~~~s~~~diVlDpf~GsGtt~~aa~~~~r~---~ig~e~~~~y~~~~~~r~ 264 (302)
T COG0863 217 RDYSFPGDIVLDPFAGSGTTGIAAKNLGRR---FIGIEINPEYVEVALKRL 264 (302)
T ss_pred HhcCCCCCEEeecCCCCChHHHHHHHcCCc---eEEEecCHHHHHHHHHHH
Confidence 333445678999999999999999999964 567999999877665544
No 213
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=42.48 E-value=1.1e+02 Score=33.08 Aligned_cols=144 Identities=15% Similarity=0.163 Sum_probs=73.8
Q ss_pred cccceeeecccccCCCChhhHHHHhcCCCCCccccCCChHHHH-HhhhhhcccCc-------chh----h---hcccccc
Q 011347 287 EKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARL-ESLRHCFQTDT-------LGY----H---LSVLKSM 351 (488)
Q Consensus 287 ~k~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~l~~teR~-k~Lgnsfqvdt-------i~~----~---lsvLK~~ 351 (488)
-+.|++- +..- .......||+-||-|.......++..+++. +.|+..+..+. +.. . +...+.+
T Consensus 220 A~lniv~-~~~~-~~~~a~~Le~~fGiP~~~~~p~Gi~~t~~~l~~ia~~~g~~~~~~~e~~i~~e~~~~~~~l~~~~~~ 297 (421)
T cd01976 220 AKLNLIH-CYRS-MNYIARMMEEKYGIPWMEYNFFGPTKIAESLRKIAAYFDDEITAKTEEVIAEYKPAMEAVIAKYRPR 297 (421)
T ss_pred CCEEEEE-CcHH-HHHHHHHHHHHhCCcEEecccCCHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557774 1111 112378899999999988776688777655 66666654321 111 1 1111222
Q ss_pred CCCCCcccccCCCCC---hhHHHHHHcCCeeeeEEEeeC--CHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhh
Q 011347 352 FPGGLTMLSVFSGIG---GAEVTLHRLGIKLKGVISIET--SETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI 426 (488)
Q Consensus 352 fp~~itVLDLFSGiG---GlslGL~~aGi~~k~vvsVEi--d~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~ 426 (488)
+ .+.+|+ +|.|.. .+...+..+|+++.. ++... ++...+..+. . ..+. ++.. +-+..++++++
T Consensus 298 L-~Gkrv~-i~~g~~~~~~~~~~l~elGmevv~-~g~~~~~~~~~~~~~~~----~-~~~~-~i~~---~~d~~e~~~~i 365 (421)
T cd01976 298 L-EGKTVM-LYVGGLRPRHYIGAYEDLGMEVVG-TGYEFAHRDDYERTEVI----P-KEGT-LLYD---DVTHYELEEFV 365 (421)
T ss_pred c-CCCEEE-EECCCCcHHHHHHHHHHCCCEEEE-EEeecCCHHHHhhHHhh----c-CCce-EEEc---CCCHHHHHHHH
Confidence 2 445555 555432 334456789998643 44432 2221112111 0 1111 1112 22334555444
Q ss_pred hccCCccEEEecCCCCCcc
Q 011347 427 HKLGSIDFVICQNSVPQIP 445 (488)
Q Consensus 427 ~~~g~~DLVIGGpPCQ~FS 445 (488)
.+ .++||++|++.....+
T Consensus 366 ~~-~~pDliig~~~~~~~a 383 (421)
T cd01976 366 KR-LKPDLIGSGIKEKYVF 383 (421)
T ss_pred HH-hCCCEEEecCcchhhh
Confidence 32 4799999999866655
No 214
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=42.32 E-value=1.2e+02 Score=32.69 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=26.5
Q ss_pred hhhHHHHhcCCCCCcc-c-cCCChHHHH-HhhhhhcccC
Q 011347 304 PEHIELILGYPSNHTQ-A-AGNSLTARL-ESLRHCFQTD 339 (488)
Q Consensus 304 ~~E~E~i~GfP~~~T~-~-~~l~~teR~-k~Lgnsfqvd 339 (488)
...||+-||-|..+.. + .|+..|++. +.|+..+..+
T Consensus 223 a~~L~~~~giP~i~~~~~P~G~~~t~~~l~~i~~~~g~~ 261 (427)
T cd01971 223 AQHLEEKYGQPYIHSPTLPIGAKATAEFLRQVAKFAGIE 261 (427)
T ss_pred HHHHHHHhCCceEecCCCccCHHHHHHHHHHHHHHhCCC
Confidence 6779999999987754 3 588887665 7777766544
No 215
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=42.23 E-value=50 Score=35.73 Aligned_cols=54 Identities=26% Similarity=0.281 Sum_probs=38.9
Q ss_pred cCcchhhhccccc--cCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHH
Q 011347 338 TDTLGYHLSVLKS--MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRI 394 (488)
Q Consensus 338 vdti~~~lsvLK~--~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t 394 (488)
|.|-.|+-.+|.+ -|. +-.|||.=||.|=++.=.-+||-+ -|++||-++.|..+
T Consensus 160 VRTgTY~~Ail~N~sDF~-~kiVlDVGaGSGILS~FAaqAGA~--~vYAvEAS~MAqyA 215 (517)
T KOG1500|consen 160 VRTGTYQRAILENHSDFQ-DKIVLDVGAGSGILSFFAAQAGAK--KVYAVEASEMAQYA 215 (517)
T ss_pred HhhhHHHHHHHhcccccC-CcEEEEecCCccHHHHHHHHhCcc--eEEEEehhHHHHHH
Confidence 3344555555555 343 344899999999999888899974 58999999887544
No 216
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=42.16 E-value=28 Score=37.26 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=65.3
Q ss_pred CCccccCCChHHHHHhh----h--hhcccCcchhhhccccc-cCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCC
Q 011347 316 NHTQAAGNSLTARLESL----R--HCFQTDTLGYHLSVLKS-MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETS 388 (488)
Q Consensus 316 ~~T~~~~l~~teR~k~L----g--nsfqvdti~~~lsvLK~-~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid 388 (488)
||..+-++.+.+|+++- . |+| +=|+|=+ +.+.+--|++|=||=||=-+=..+|||. -++++||.
T Consensus 79 HYN~~~e~g~e~Rq~S~Ii~lRnfNNw-------IKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~--~~igiDIA 149 (389)
T KOG1975|consen 79 HYNERTEVGREKRQRSPIIFLRNFNNW-------IKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIG--EYIGIDIA 149 (389)
T ss_pred HHHHHHHHhHhhhccCceeehhhhhHH-------HHHHHHHHHhccccccceeccCCcccHhHhhhhccc--ceEeeehh
Confidence 55555566666666432 1 222 2344444 3344556899999999999999999985 48899999
Q ss_pred HHHHHHHHHHhhh-cCCC-----CCcceeccccccChhhHHHhhhcc-CCccEEEecCC
Q 011347 389 ETNRRILKRWWES-SGQT-----GELVQIEDIQALTTKKFESLIHKL-GSIDFVICQNS 440 (488)
Q Consensus 389 ~~a~~t~~~~~~~-~n~~-----g~lv~~~DI~~L~~~~Ie~l~~~~-g~~DLVIGGpP 440 (488)
+...+-.+.-+.+ .+.. ...++.+|-.... |..++... ..||||...+-
T Consensus 150 evSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~---l~d~~e~~dp~fDivScQF~ 205 (389)
T KOG1975|consen 150 EVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKER---LMDLLEFKDPRFDIVSCQFA 205 (389)
T ss_pred hccHHHHHHHHHHHHhhhhcccceeEEEEeccchhH---HHHhccCCCCCcceeeeeee
Confidence 8766544332211 1111 1234556665443 33333212 33999975553
No 217
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=40.84 E-value=48 Score=34.23 Aligned_cols=119 Identities=21% Similarity=0.072 Sum_probs=67.6
Q ss_pred HHHHHHHHHhhccCCCchhhhHHHHHhhcccceeeec------ccccCC-CChhhHHHHhcCCCCCccccCCChHHHHHh
Q 011347 259 LCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVG------AYKLGP-VDPEHIELILGYPSNHTQAAGNSLTARLES 331 (488)
Q Consensus 259 l~~~i~~~~~~~~~~~~~~~q~~vl~~c~k~nlvW~g------~~~~~p-le~~E~E~i~GfP~~~T~~~~l~~teR~k~ 331 (488)
|.+.++.....+ .++.+.+..+..-.++++-+|.+ ...|++ ++-|.+--++|...=| -+|..+=+++
T Consensus 8 L~~~l~~~Fvql--~~D~ET~~FL~~S~e~S~~~~~ql~~~l~~~~L~~f~S~T~iNG~LgRG~MF----vfS~~Q~~~L 81 (265)
T PF05219_consen 8 LPEELQSKFVQL--SPDEETQEFLDRSYEKSDWFFTQLWHSLASSILSWFMSKTDINGILGRGSMF----VFSEEQFRKL 81 (265)
T ss_pred CCHHHHHHHhhc--CCCHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHhHHhHhhhhcCCcEE----EecHHHHHHH
Confidence 334444444443 35566666666555555554421 111222 2355555555544322 3466666666
Q ss_pred hhhhcccCcchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHH
Q 011347 332 LRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK 396 (488)
Q Consensus 332 Lgnsfqvdti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~ 396 (488)
|...-... .+ .-+..++|||=||.|+.+.-+..+ ++-|++-|+++.-+..++
T Consensus 82 L~~~~~~~---------~~-~~~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~ 133 (265)
T PF05219_consen 82 LRISGFSW---------NP-DWKDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLS 133 (265)
T ss_pred hhhhccCC---------CC-cccCCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHH
Confidence 65441111 01 114468999999999998877553 567899999999887775
No 218
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=40.22 E-value=43 Score=34.21 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=30.0
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCH
Q 011347 352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSE 389 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~ 389 (488)
..++-.+||+=|-.|||+.-+-+.|-. -|+|+|.--
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~ 112 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGY 112 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCCc--EEEEEEccC
Confidence 457788999999999999888888875 488998754
No 219
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=39.97 E-value=69 Score=30.85 Aligned_cols=84 Identities=20% Similarity=0.159 Sum_probs=48.1
Q ss_pred cccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEEE
Q 011347 357 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI 436 (488)
Q Consensus 357 tVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVI 436 (488)
.+||+=||-|.+-+.+-..-=+ ..++++|+...........-...+.++..++.+|...+-.. ++ ..+.+|-|.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd-~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~----~~-~~~~v~~i~ 93 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPD-INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRR----LF-PPGSVDRIY 93 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTT-SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHH----HS-TTTSEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCC-CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhh----cc-cCCchheEE
Confidence 5899999999998776544322 35789999988765444433334444555666777654222 22 236789888
Q ss_pred ecCCCCCccc
Q 011347 437 CQNSVPQIPN 446 (488)
Q Consensus 437 GGpPCQ~FS~ 446 (488)
=-+|+-=+-.
T Consensus 94 i~FPDPWpK~ 103 (195)
T PF02390_consen 94 INFPDPWPKK 103 (195)
T ss_dssp EES-----SG
T ss_pred EeCCCCCccc
Confidence 8888875553
No 220
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=38.68 E-value=1.2e+02 Score=33.11 Aligned_cols=135 Identities=14% Similarity=0.140 Sum_probs=67.4
Q ss_pred hhhHHHHhcCCCCCc-cccCCChHHHH-HhhhhhcccCcchh-------hhccccc---cCCCCCcccccCCCCChhHHH
Q 011347 304 PEHIELILGYPSNHT-QAAGNSLTARL-ESLRHCFQTDTLGY-------HLSVLKS---MFPGGLTMLSVFSGIGGAEVT 371 (488)
Q Consensus 304 ~~E~E~i~GfP~~~T-~~~~l~~teR~-k~Lgnsfqvdti~~-------~lsvLK~---~fp~~itVLDLFSGiGGlslG 371 (488)
...||+-||-|.-+. ...|+..|++. +.|+..+..+.-.. .+..+.+ .+-.+.+|. ++ |--...+|
T Consensus 242 A~~Le~~fGiPyi~~~~P~G~~~T~~~l~~ia~~~g~~~~e~i~~er~~~~~~~~~~~~~~l~Gkrv~-i~-g~~~~~~~ 319 (454)
T cd01973 242 AEFLQKKFDVPAILGPTPIGIKNTDAFLQNIKELTGKPIPESLVRERGIAIDALADLAHMFFANKKVA-IF-GHPDLVIG 319 (454)
T ss_pred HHHHHHHHCCCeeccCCCcChHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEE-EE-cCHHHHHH
Confidence 677888999987643 45688887665 55555443221111 1112222 112456663 55 33356666
Q ss_pred HHH----cCCeeeeEEEeeCCHHH--HHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhcc-CCccEEEecCCCCCc
Q 011347 372 LHR----LGIKLKGVISIETSETN--RRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL-GSIDFVICQNSVPQI 444 (488)
Q Consensus 372 L~~----aGi~~k~vvsVEid~~a--~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~-g~~DLVIGGpPCQ~F 444 (488)
+.+ +|+.+.+++..+-+..- ...++..-...+.....+ -.-+..++++.+.+. .++||++|++-+...
T Consensus 320 l~~fl~elGm~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi-----~~~d~~e~~~~i~~~~~~~dliig~s~~~~~ 394 (454)
T cd01973 320 LAEFCLEVEMKPVLLLLGDDNSKYKKDPRIKALKEKADYDMEIV-----TNADLWELEKRIKNKGLELDLILGHSKGRYI 394 (454)
T ss_pred HHHHHHHCCCeEEEEEECCCCcccchhHHHHHHHhhcCCCceEE-----ECCCHHHHHHHHHhcCCCCCEEEECCccHHH
Confidence 666 89987655544422221 112222111111111111 222344555555444 469999999877555
Q ss_pred c
Q 011347 445 P 445 (488)
Q Consensus 445 S 445 (488)
+
T Consensus 395 A 395 (454)
T cd01973 395 A 395 (454)
T ss_pred H
Confidence 4
No 221
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=37.89 E-value=48 Score=34.16 Aligned_cols=93 Identities=20% Similarity=0.250 Sum_probs=58.6
Q ss_pred HHHhhhhhcccCcchhhhccccccCCCCCcccccCCCCChhHHHHHH-cCC-------eeeeEEEeeCCHHHHHHHHHHh
Q 011347 328 RLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGI-------KLKGVISIETSETNRRILKRWW 399 (488)
Q Consensus 328 R~k~Lgnsfqvdti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~-aGi-------~~k~vvsVEid~~a~~t~~~~~ 399 (488)
|-++--+-.|.|....+|.= --+|+||.+--|.-+.-|.+ +.- .-+.+++||+-+.+
T Consensus 22 RARSAFKLlqideef~i~~g-------v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-------- 86 (294)
T KOG1099|consen 22 RARSAFKLLQIDEEFQIFEG-------VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-------- 86 (294)
T ss_pred hHHhHHHHhhhhhhhhHHhh-------hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------
Confidence 44444445577765555533 35799999999998876642 222 11237889987764
Q ss_pred hhcCCCCCcceeccccccChhhHHHhhhccC--CccEEEe-cCC
Q 011347 400 ESSGQTGELVQIEDIQALTTKKFESLIHKLG--SIDFVIC-QNS 440 (488)
Q Consensus 400 ~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g--~~DLVIG-GpP 440 (488)
.-.|.+-+.+||++.+.. +.++..|| +.|||+. |.|
T Consensus 87 ---PI~GV~qlq~DIT~~sta--e~Ii~hfggekAdlVvcDGAP 125 (294)
T KOG1099|consen 87 ---PIEGVIQLQGDITSASTA--EAIIEHFGGEKADLVVCDGAP 125 (294)
T ss_pred ---ccCceEEeecccCCHhHH--HHHHHHhCCCCccEEEeCCCC
Confidence 345776678999987753 34455453 6898763 444
No 222
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=37.25 E-value=75 Score=33.97 Aligned_cols=129 Identities=16% Similarity=0.141 Sum_probs=66.3
Q ss_pred hhhHHHHhcCCCCCcc-ccCCChHHHH-HhhhhhcccCcchh-------hhcccccc--CCCCCcccccCCCC---ChhH
Q 011347 304 PEHIELILGYPSNHTQ-AAGNSLTARL-ESLRHCFQTDTLGY-------HLSVLKSM--FPGGLTMLSVFSGI---GGAE 369 (488)
Q Consensus 304 ~~E~E~i~GfP~~~T~-~~~l~~teR~-k~Lgnsfqvdti~~-------~lsvLK~~--fp~~itVLDLFSGi---GGls 369 (488)
...||+-||-|.-+.. ..++..+++. +.|+..+..+.... .+..+.+. +-.+-+|+ ++++. -|+.
T Consensus 237 a~~L~e~~GiP~~~~~~p~G~~~t~~~l~~l~~~~g~~~~~~~~~~r~~~~~~~~~~~~~l~gk~v~-i~~~~~~~~~l~ 315 (428)
T cd01965 237 AKALEEKFGVPYILFPTPIGLKATDEFLRALSKLSGKPIPEELERERGRLLDAMLDSHFYLGGKRVA-IAGDPDLLLGLS 315 (428)
T ss_pred HHHHHHHHCCCeeecCCCcChHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEE-EEcChHHHHHHH
Confidence 6778888999987665 5677777665 77777665443111 11111110 11344442 33222 1344
Q ss_pred HHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEEEecC
Q 011347 370 VTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQN 439 (488)
Q Consensus 370 lGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGp 439 (488)
-.|..+|+.+..+++.-.++...+.++.. ... .+ .....|-.-+..++++.+. ..++|||+|++
T Consensus 316 ~~L~e~G~~v~~v~~~~~~~~~~~~~~~~-~~~--~~--~~~~~v~~~d~~el~~~i~-~~~pdliig~~ 379 (428)
T cd01965 316 RFLLEMGAEPVAAVTGTDNPPFEKRMELL-ASL--EG--IPAEVVFVGDLWDLESLAK-EEPVDLLIGNS 379 (428)
T ss_pred HHHHHcCCcceEEEEcCCCchhHHHHHHh-hhh--cC--CCceEEECCCHHHHHHHhh-ccCCCEEEECc
Confidence 45789999887666654555443333221 110 11 0111222223445554443 24699999998
No 223
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=37.21 E-value=43 Score=34.57 Aligned_cols=91 Identities=13% Similarity=0.177 Sum_probs=55.3
Q ss_pred cccCcchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC----CCCccee
Q 011347 336 FQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ----TGELVQI 411 (488)
Q Consensus 336 fqvdti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~----~g~lv~~ 411 (488)
|.-..+..|.-.+.-- +.-+||=+=-|.||..--+.+..- ++-++.||||+.-.+.-+.|+....+ +-..+++
T Consensus 60 ~~yhEml~h~~~~ah~--~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i 136 (282)
T COG0421 60 FIYHEMLAHVPLLAHP--NPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIII 136 (282)
T ss_pred HHHHHHHHhchhhhCC--CCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEe
Confidence 3444445555444332 223777777788888777777663 56788999999999988887764321 1112344
Q ss_pred ccccccChhhHHHhhhcc-CCccEEEe
Q 011347 412 EDIQALTTKKFESLIHKL-GSIDFVIC 437 (488)
Q Consensus 412 ~DI~~L~~~~Ie~l~~~~-g~~DLVIG 437 (488)
+|..+ ++.+. ..+|+||-
T Consensus 137 ~Dg~~--------~v~~~~~~fDvIi~ 155 (282)
T COG0421 137 DDGVE--------FLRDCEEKFDVIIV 155 (282)
T ss_pred ccHHH--------HHHhCCCcCCEEEE
Confidence 55443 23333 36998773
No 224
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=36.10 E-value=1e+02 Score=34.15 Aligned_cols=84 Identities=21% Similarity=0.278 Sum_probs=64.7
Q ss_pred CCCcccccCCCCChhHHH----HHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhcc
Q 011347 354 GGLTMLSVFSGIGGAEVT----LHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 429 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslG----L~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~ 429 (488)
.+-++||+.|--||=+.- ++.-| +++|.|.+..-.++++.+.......++++.+.|..++...++ .
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G----~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~------~ 310 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTG----VIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEF------P 310 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCc----eEEecccchHHHHHHHHHHHHhCCCceEEEccCccccccccc------C
Confidence 578999999999996533 34566 388999999999999988777777788887888876655432 1
Q ss_pred CCccEEEecCCCCCcccc
Q 011347 430 GSIDFVICQNSVPQIPNS 447 (488)
Q Consensus 430 g~~DLVIGGpPCQ~FS~a 447 (488)
+.||=|.=-.||.+....
T Consensus 311 ~~fDRVLLDAPCSGtgvi 328 (460)
T KOG1122|consen 311 GSFDRVLLDAPCSGTGVI 328 (460)
T ss_pred cccceeeecCCCCCCccc
Confidence 369988889999986543
No 225
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=34.44 E-value=1e+02 Score=33.36 Aligned_cols=138 Identities=14% Similarity=0.132 Sum_probs=75.3
Q ss_pred ccceeeecccccCCCChhhHHHHhcCCCCCc-cccCCChHHH-HHhhhhhcccCcc-------hhhhcccccc--CCCCC
Q 011347 288 KLNLVWVGAYKLGPVDPEHIELILGYPSNHT-QAAGNSLTAR-LESLRHCFQTDTL-------GYHLSVLKSM--FPGGL 356 (488)
Q Consensus 288 k~nlvW~g~~~~~ple~~E~E~i~GfP~~~T-~~~~l~~teR-~k~Lgnsfqvdti-------~~~lsvLK~~--fp~~i 356 (488)
+.|++ +++. .-.....||+-||-|-.+. ...++..+++ ++.|...+..+.- +.....+.++ +-.+.
T Consensus 236 ~lniv-~~~~--~~~~a~~Lee~~giP~~~~~~p~G~~~t~~~l~~l~~~~g~~~~~~~~~~r~~~~~~l~~~~~~l~Gk 312 (432)
T TIGR01285 236 CCTLA-IGES--MRRAASLLADRCGVPYIVFPSLMGLEAVDAFLHVLMKISGRAVPERFERQRRQLQDAMLDTHFFLGGK 312 (432)
T ss_pred cEEEE-EChh--HHHHHHHHHHHHCCCeEecCCCcChHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 34676 3332 1234788999999998876 4568888876 4666665543321 1122222221 11345
Q ss_pred cccccCCCC---ChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 357 TMLSVFSGI---GGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 357 tVLDLFSGi---GGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
+| -++.|. -|+.-.|..+|+.+..+++-..++.. +. . ..+. +..+|. .++++++.+ .++|
T Consensus 313 rv-ai~~~~~~~~~l~~~l~elGm~v~~~~~~~~~~~~----~~----~-~~~~-~~~~D~-----~~l~~~i~~-~~~d 375 (432)
T TIGR01285 313 KV-AIAAEPDLLAAWATFFTSMGAQIVAAVTTTGSPLL----QK----L-PVET-VVIGDL-----EDLEDLACA-AGAD 375 (432)
T ss_pred EE-EEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCCHHH----Hh----C-CcCc-EEeCCH-----HHHHHHHhh-cCCC
Confidence 54 344432 24445578999998776655554432 11 1 1122 333444 345554433 4699
Q ss_pred EEEecCCCCCcc
Q 011347 434 FVICQNSVPQIP 445 (488)
Q Consensus 434 LVIGGpPCQ~FS 445 (488)
+|+|++-....+
T Consensus 376 liig~s~~k~~A 387 (432)
T TIGR01285 376 LLITNSHGRALA 387 (432)
T ss_pred EEEECcchHHHH
Confidence 999988665444
No 226
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=33.99 E-value=43 Score=34.49 Aligned_cols=77 Identities=21% Similarity=0.177 Sum_probs=49.6
Q ss_pred cccccCCCCChhHHHHHHcCCe--eeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347 357 TMLSVFSGIGGAEVTLHRLGIK--LKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 434 (488)
Q Consensus 357 tVLDLFSGiGGlslGL~~aGi~--~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL 434 (488)
++|++=||+|-...-+-+--=+ + .+++||.++.|.+.++..- .........++.+|+.+.+..-+ .-|.+|+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l-~v~acDfsp~Ai~~vk~~~----~~~e~~~~afv~Dlt~~~~~~~~-~~~svD~ 147 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRL-KVYACDFSPRAIELVKKSS----GYDESRVEAFVWDLTSPSLKEPP-EEGSVDI 147 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCe-EEEEcCCChHHHHHHHhcc----ccchhhhcccceeccchhccCCC-CcCccce
Confidence 7788889999877666432211 3 3789999999999998621 22223445778888877643211 2367887
Q ss_pred EEecC
Q 011347 435 VICQN 439 (488)
Q Consensus 435 VIGGp 439 (488)
++.=+
T Consensus 148 it~IF 152 (264)
T KOG2361|consen 148 ITLIF 152 (264)
T ss_pred EEEEE
Confidence 76544
No 227
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=33.50 E-value=1.4e+02 Score=31.81 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=27.5
Q ss_pred hhhHHHHhcCCCCCccccCCChHHHH-HhhhhhcccC
Q 011347 304 PEHIELILGYPSNHTQAAGNSLTARL-ESLRHCFQTD 339 (488)
Q Consensus 304 ~~E~E~i~GfP~~~T~~~~l~~teR~-k~Lgnsfqvd 339 (488)
...||+-||-|.-+....++..+++. +.|...+..+
T Consensus 225 A~~L~er~GiP~~~~~~~G~~~t~~~l~~la~~~g~~ 261 (415)
T cd01977 225 ANELKKRYGIPRLDVDGFGFEYCAESLRKIGAFFGIE 261 (415)
T ss_pred HHHHHHHhCCCeEEeccCCHHHHHHHHHHHHHHhCcc
Confidence 67899999999988776788888554 7777666544
No 228
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=33.34 E-value=11 Score=41.24 Aligned_cols=75 Identities=19% Similarity=0.289 Sum_probs=53.0
Q ss_pred CCCccc-cccccccchhhHHHHhhhhcc-CCceeeeccccC-----cccccccccccCCCCCCCCCCCCCCCcccccccC
Q 011347 160 QPPYFF-YGNVVDVSIDCWVKMSHFLYS-LEPEFVNSQYFS-----ALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPH 232 (488)
Q Consensus 160 ~ppfF~-fENV~~~~~~~w~~Is~fL~~-i~Pe~Vds~~fs-----Aa~R~RgY~hNLP~~nR~~~~p~~p~tiqd~lp~ 232 (488)
=|-|++ =||=--+|...=-.+.+-|-+ +.=.+++|.|+. ++.+++.||.|||.+-. -=|.+|=.|
T Consensus 331 ~pvy~~a~~~DhI~P~~Sv~~g~~l~~g~~~f~l~~sGHIa~vVN~p~~~k~~~w~n~~~~~~--------~Wl~~a~~~ 402 (445)
T COG3243 331 CPVYNLAAEEDHIAPWSSVYLGARLLGGEVTFVLSRSGHIAGVVNPPGNAKYQYWTNLPADAE--------AWLSGAKEH 402 (445)
T ss_pred cceEEEeecccccCCHHHHHHHHHhcCCceEEEEecCceEEEEeCCcchhhhhcCCCCcchHH--------HHHHhhccC
Confidence 344544 456566677777778888876 555667888875 68999999999666522 124566678
Q ss_pred CCccCCCcCC
Q 011347 233 TKKWWPSWDT 242 (488)
Q Consensus 233 ~~~~wp~wd~ 242 (488)
--+|||.|+.
T Consensus 403 ~gsww~~w~~ 412 (445)
T COG3243 403 PGSWWPHWQQ 412 (445)
T ss_pred CCccccchHH
Confidence 8899999986
No 229
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=33.07 E-value=91 Score=31.60 Aligned_cols=63 Identities=22% Similarity=0.241 Sum_probs=42.6
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-Ccceeccccc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQA 416 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~ 416 (488)
..|.+||+-=.|.|.++++|-++ |=. =-|++.|+.+.-.+..+.++....... ..+...||.+
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~-G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~ 103 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPT-GHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCE 103 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTT-SEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGC
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCC-eEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceec
Confidence 35788999999999999999863 211 238899999998888888887654433 2356688853
No 230
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=32.92 E-value=10 Score=31.23 Aligned_cols=34 Identities=15% Similarity=0.013 Sum_probs=24.0
Q ss_pred cccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHH
Q 011347 359 LSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR 393 (488)
Q Consensus 359 LDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~ 393 (488)
||+=||.|.+...+...- +..-++++|+++.+..
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~ 34 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLE 34 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTS
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHH
Confidence 567799999988887773 2344679999999763
No 231
>PLN02823 spermine synthase
Probab=32.88 E-value=1.2e+02 Score=32.11 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=45.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcC----CCCCcceeccccccChhhHHHhhhcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHKL 429 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n----~~g~lv~~~DI~~L~~~~Ie~l~~~~ 429 (488)
+.-+||-|=.|.|++..-+.+.. .++.+..||||+...+..+.|+.... .+...++.+|..+. |+ ...
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~----L~---~~~ 174 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE----LE---KRD 174 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH----Hh---hCC
Confidence 44567766556665554343432 23457889999999999998774211 12222444555432 11 123
Q ss_pred CCccEEEecC
Q 011347 430 GSIDFVICQN 439 (488)
Q Consensus 430 g~~DLVIGGp 439 (488)
+.+|+|+.-.
T Consensus 175 ~~yDvIi~D~ 184 (336)
T PLN02823 175 EKFDVIIGDL 184 (336)
T ss_pred CCccEEEecC
Confidence 5799999863
No 232
>PTZ00357 methyltransferase; Provisional
Probab=31.19 E-value=72 Score=37.58 Aligned_cols=75 Identities=17% Similarity=0.255 Sum_probs=44.8
Q ss_pred HHHHHcCCeeeeEEEeeCCHHHH-HHHHH-----HhhhcC---CCCCcceeccccccChhhHH---HhhhccCCccEE--
Q 011347 370 VTLHRLGIKLKGVISIETSETNR-RILKR-----WWESSG---QTGELVQIEDIQALTTKKFE---SLIHKLGSIDFV-- 435 (488)
Q Consensus 370 lGL~~aGi~~k~vvsVEid~~a~-~t~~~-----~~~~~n---~~g~lv~~~DI~~L~~~~Ie---~l~~~~g~~DLV-- 435 (488)
.+++.+|++++ |++||.|+.|. -++.. -|.+.+ ..-..++..|++++...+.. .+-..+|.+|||
T Consensus 720 rAak~~gvkVr-IyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 720 HAVSALGVRLR-IFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVS 798 (1072)
T ss_pred HHHHHcCCcEE-EEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehH
Confidence 45678999875 78999995543 33433 242210 01123677999998643211 011134678986
Q ss_pred --EecCCCCCcc
Q 011347 436 --ICQNSVPQIP 445 (488)
Q Consensus 436 --IGGpPCQ~FS 445 (488)
.|.|=|+-+|
T Consensus 799 ELLGSFGDNELS 810 (1072)
T PTZ00357 799 ELLGSLGDNELS 810 (1072)
T ss_pred hhhcccccccCC
Confidence 5888888777
No 233
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=30.63 E-value=45 Score=30.56 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=21.1
Q ss_pred hhhhhHHhcCCCHHHHHHHHHHhCCCCc
Q 011347 2 EITLQLLEMGFSENQVSLAIEKFGSKTP 29 (488)
Q Consensus 2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~ 29 (488)
.|...|..-|.+++||..|+++.|....
T Consensus 25 ~k~~FL~sKGLt~~EI~~al~~a~~~~~ 52 (136)
T PF04695_consen 25 KKIAFLESKGLTEEEIDEALGRAGSPPA 52 (136)
T ss_dssp HHHHHHHHCT--HHHHHHHHHHHT--S-
T ss_pred HHHHHHHcCCCCHHHHHHHHHhcCCccc
Confidence 4678999999999999999999999876
No 234
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=29.51 E-value=3.2e+02 Score=29.46 Aligned_cols=132 Identities=14% Similarity=0.164 Sum_probs=64.9
Q ss_pred hhhHHHHhcCCCCCcc-ccCCChHHHH-HhhhhhcccCc---chh----hhcccccc--CCCCCcccccCCCC---ChhH
Q 011347 304 PEHIELILGYPSNHTQ-AAGNSLTARL-ESLRHCFQTDT---LGY----HLSVLKSM--FPGGLTMLSVFSGI---GGAE 369 (488)
Q Consensus 304 ~~E~E~i~GfP~~~T~-~~~l~~teR~-k~Lgnsfqvdt---i~~----~lsvLK~~--fp~~itVLDLFSGi---GGls 369 (488)
...||+-||-|-.+.. ..++..+++. +.|+..+..+. +.. ....+.++ +-.+.+| -++.+. -|+.
T Consensus 241 a~~Le~~~giP~~~~~~p~G~~~t~~~l~~l~~~~g~~~~~~i~~er~~~~~~~~~~~~~l~gkrv-~i~g~~~~~~~la 319 (435)
T cd01974 241 AKFLEKKCKVPVETLNMPIGVAATDEFLMALSELTGKPIPEELEEERGRLVDAMTDSHQYLHGKKF-ALYGDPDFLIGLT 319 (435)
T ss_pred HHHHHHHhCCCeeecCCCcChHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEE-EEEcChHHHHHHH
Confidence 5678889999977664 5577777554 77766664442 111 11222221 1134444 244333 1334
Q ss_pred HHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcC-CCCCcceeccccccChhhHHHhhhccCCccEEEecCCC
Q 011347 370 VTLHRLGIKLKGVISIETSETNRRILKRWWESSG-QTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV 441 (488)
Q Consensus 370 lGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n-~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPC 441 (488)
-.|..+|+++..+.+-..++.-...++.+..... ..+..++. +-+..++++.+.. .++||+||++-.
T Consensus 320 ~~L~elGm~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~----~~d~~e~~~~i~~-~~pDliiG~s~~ 387 (435)
T cd01974 320 SFLLELGMEPVHVLTGNGGKRFEKEMQALLDASPYGAGAKVYP----GKDLWHLRSLLFT-EPVDLLIGNTYG 387 (435)
T ss_pred HHHHHCCCEEEEEEeCCCCHHHHHHHHHHHhhcCCCCCcEEEE----CCCHHHHHHHHhh-cCCCEEEECccH
Confidence 4578999987544432334443444444332211 11111111 1123344443322 469999998743
No 235
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=29.39 E-value=49 Score=27.38 Aligned_cols=37 Identities=30% Similarity=0.485 Sum_probs=28.7
Q ss_pred hhHHhcCCCHHHHHHHHHH----hCCC------Cchhhhhhhhhhcc
Q 011347 5 LQLLEMGFSENQVSLAIEK----FGSK------TPISELADKIFSGQ 41 (488)
Q Consensus 5 ~~l~~mgf~~~e~~~ai~~----~g~~------~~~~~l~d~i~a~~ 41 (488)
-++..|||++++|.-.|.+ +|.+ .+-..|+|.||..|
T Consensus 16 dam~~lG~~~~~v~~vl~~LL~lY~~nW~lIEed~Y~~L~dai~e~~ 62 (65)
T PF10440_consen 16 DAMRQLGFSKKQVRPVLKNLLKLYDGNWELIEEDNYRVLADAIFEEQ 62 (65)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCchhhhcccHHHHHHHHHHHh
Confidence 5788999999999977765 4543 44556999999877
No 236
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=28.88 E-value=1.2e+02 Score=31.72 Aligned_cols=86 Identities=10% Similarity=0.202 Sum_probs=39.7
Q ss_pred CCCCCcccccCCCCChh--HHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhH-HHhhhc
Q 011347 352 FPGGLTMLSVFSGIGGA--EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKF-ESLIHK 428 (488)
Q Consensus 352 fp~~itVLDLFSGiGGl--slGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~I-e~l~~~ 428 (488)
.+..+++||+=.|+-.. -+|-..-|.. .+|.|||+.+.+..+.+=..+++-...+.+.... +...| ..++..
T Consensus 100 ~~~~v~glDIGTGAscIYpLLg~~~~~W~---fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~--~~~~i~~~i~~~ 174 (299)
T PF05971_consen 100 IPEKVRGLDIGTGASCIYPLLGAKLYGWS---FVATDIDPKSLESARENVERNPNLESRIELRKQK--NPDNIFDGIIQP 174 (299)
T ss_dssp CS---EEEEES-TTTTHHHHHHHHHH--E---EEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE----ST-SSTTTSTT-
T ss_pred cccceEeecCCccHHHHHHHHhhhhcCCe---EEEecCCHHHHHHHHHHHHhccccccceEEEEcC--Cccccchhhhcc
Confidence 44578999998888776 4777777875 4789999998877766543321222222221111 11111 112222
Q ss_pred cCCccEEEecCCCC
Q 011347 429 LGSIDFVICQNSVP 442 (488)
Q Consensus 429 ~g~~DLVIGGpPCQ 442 (488)
...+|+.++-||=-
T Consensus 175 ~e~~dftmCNPPFy 188 (299)
T PF05971_consen 175 NERFDFTMCNPPFY 188 (299)
T ss_dssp -S-EEEEEE-----
T ss_pred cceeeEEecCCccc
Confidence 34799999888753
No 237
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.53 E-value=39 Score=36.37 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=18.6
Q ss_pred hhhHHhcCCCHHHHHHHHHHhC
Q 011347 4 TLQLLEMGFSENQVSLAIEKFG 25 (488)
Q Consensus 4 ~~~l~~mgf~~~e~~~ai~~~g 25 (488)
+..|++|||.+++|..|+.-.=
T Consensus 160 I~~i~eMGf~R~qV~~ALRAaf 181 (378)
T TIGR00601 160 IEEIMEMGYEREEVERALRAAF 181 (378)
T ss_pred HHHHHHhCCCHHHHHHHHHHHh
Confidence 4789999999999999987543
No 238
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=28.05 E-value=74 Score=37.59 Aligned_cols=91 Identities=24% Similarity=0.348 Sum_probs=55.6
Q ss_pred cccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcC-CCCCcceeccccccChhhHHHhhh
Q 011347 349 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-QTGELVQIEDIQALTTKKFESLIH 427 (488)
Q Consensus 349 K~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n-~~g~lv~~~DI~~L~~~~Ie~l~~ 427 (488)
+.+| .+.+++|=|+|-|.+-+=-.++|.+ |++||.+|+|--+++.-.+-.. +-++ ...|+.......-+.|..
T Consensus 86 ~~~~-~~~~~lDPfAG~GSIPlEAlRLG~~---v~AvelnPvAylfLKavlEyPkkfg~~--liedv~~~~~wI~e~Lk~ 159 (875)
T COG1743 86 ETPF-EGPKLLDPFAGGGSIPLEALRLGLE---VVAVELNPVAYLFLKAVLEYPKKFGPE--LIEDVERWGAWITEQLKN 159 (875)
T ss_pred cCcc-cCCcccccccCCCccchHHHhcCce---eEEEecccHHHHHHHHHHhcchhhhHH--HHHHHHHHHHHHHHHHhh
Confidence 4444 4567999999999888777899965 6899999999888876443111 1122 234665555443333333
Q ss_pred c-cCCc---c-------EEEecCCCCCcc
Q 011347 428 K-LGSI---D-------FVICQNSVPQIP 445 (488)
Q Consensus 428 ~-~g~~---D-------LVIGGpPCQ~FS 445 (488)
. ++++ | =.|-||=|--+.
T Consensus 160 ~~i~e~y~~dvaaYiw~w~VkCP~CG~~t 188 (875)
T COG1743 160 DPIGELYDEDVAAYIWTWEVKCPRCGRLT 188 (875)
T ss_pred ccchhhccccceeeEEEEEEecCCcCccc
Confidence 2 1211 2 256788886554
No 239
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=27.91 E-value=2e+02 Score=30.26 Aligned_cols=131 Identities=15% Similarity=0.230 Sum_probs=65.9
Q ss_pred hhhHHHHhcCCCCCccccCCChHHHH-HhhhhhcccCc------------chhhhccccccCCCCCcccccCCCCC---h
Q 011347 304 PEHIELILGYPSNHTQAAGNSLTARL-ESLRHCFQTDT------------LGYHLSVLKSMFPGGLTMLSVFSGIG---G 367 (488)
Q Consensus 304 ~~E~E~i~GfP~~~T~~~~l~~teR~-k~Lgnsfqvdt------------i~~~lsvLK~~fp~~itVLDLFSGiG---G 367 (488)
...|++-+|-|.-+....++..+++. +.|+..+.... +...+...+.++ .+.+|. ++.|.+ +
T Consensus 223 a~~L~~r~GiP~~~~~p~G~~~t~~~l~~l~~~lg~~~~~~~~i~~~~~~~~~~l~~~~~~l-~gkrv~-I~~~~~~~~~ 300 (406)
T cd01967 223 AREMEERYGIPYMEVNFYGFEDTSESLRKIAKFFGDEEKAEEVIAEEEARIKPELEKYRERL-KGKKVI-IYTGGARSWH 300 (406)
T ss_pred HHHHHHhhCCCEEEecCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCEEE-EEccCcchHH
Confidence 66888889999877665677777554 66666554411 122222233323 344442 344433 4
Q ss_pred hHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEEEecCCCCCcc
Q 011347 368 AEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIP 445 (488)
Q Consensus 368 lslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ~FS 445 (488)
+...+..+|+++. .++....... .++..+... .... .+ |.+.+..++.+.+.+ -++|||+|++-....+
T Consensus 301 ~~~~l~elG~~v~-~~~~~~~~~~--~~~~~~~~~-~~~~-~~---~~~~~~~~~~~~~~~-~~pdl~ig~~~~~~~a 369 (406)
T cd01967 301 VIAALRELGMEVV-AAGYEFGHDD--DYERIRKIL-DEGT-LL---VDDYNDLELEELVEK-LKPDLILSGIKEKYVA 369 (406)
T ss_pred HHHHHHHcCCEEE-EEEEecCCHH--HHHHHHhcC-CCCc-EE---EeCCCHHHHHHHHHh-cCCCEEEeCCcchHHH
Confidence 5566788999863 3344433221 222211111 1111 12 223333344433322 3689999987554333
No 240
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=27.68 E-value=75 Score=34.04 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=30.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHH
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR 393 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~ 393 (488)
++-+|||.=||.|=+++=--+||- +.|+|||.+..+..
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~ia~~ 97 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSIADF 97 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCc--ceEEEEechHHHHH
Confidence 455699999999999988889995 46889998887743
No 241
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=26.60 E-value=2.4e+02 Score=30.79 Aligned_cols=187 Identities=17% Similarity=0.147 Sum_probs=90.6
Q ss_pred cccceeeccCCchhHHHHHHHHHHhhccC----CCc-hhhhHHHHHhh-cccceeeecccccCCCChhhHHHHhcCCCCC
Q 011347 244 KHLSCINSGTSGISQLCERFEKLLRDSRG----VLS-SQQQRDILHRS-EKLNLVWVGAYKLGPVDPEHIELILGYPSNH 317 (488)
Q Consensus 244 ~kl~ci~t~~~~~~~l~~~i~~~~~~~~~----~~~-~~~q~~vl~~c-~k~nlvW~g~~~~~ple~~E~E~i~GfP~~~ 317 (488)
.++|=|- .. ....-.+-|+++|++.|= ..+ ...-..+-..- -+.|+|--+. ..---...||.-||-|..+
T Consensus 200 ~~VNiiG-~~-~~~gd~~el~~lL~~~Gl~v~~~~~g~~s~~ei~~~~~A~lniv~~~~--~~~~~A~~Le~~~GiP~~~ 275 (457)
T TIGR01284 200 YDVNLIG-EY-NIQGDLWVLKKYFERMGIQVLSTFTGNGCYDELRWMHRAKLNVVRCAR--SANYIANELEERYGIPRLD 275 (457)
T ss_pred CeEEEEc-cC-CchhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHhccccCEEEEEChH--HHHHHHHHHHHHhCCCeEe
Confidence 4566552 22 222224557777776642 112 11112222222 3668874211 1111267899999999998
Q ss_pred ccccCCChHHHH-HhhhhhcccCcc-----h----h---hhccccccCCCCCcccccCCCCC---hhHHHHH-HcCCeee
Q 011347 318 TQAAGNSLTARL-ESLRHCFQTDTL-----G----Y---HLSVLKSMFPGGLTMLSVFSGIG---GAEVTLH-RLGIKLK 380 (488)
Q Consensus 318 T~~~~l~~teR~-k~Lgnsfqvdti-----~----~---~lsvLK~~fp~~itVLDLFSGiG---GlslGL~-~aGi~~k 380 (488)
....|+..|++. +.|...+..+.- . . .+...+.++ .+.+| -+|.|.. ++...|. .+|+++.
T Consensus 276 ~~~~G~~~T~~~l~~ia~~~g~~~~~e~~i~~~~~~~~~~ld~~~~~L-~Gkrv-aI~~~~~~~~~l~~~l~~ElGmevv 353 (457)
T TIGR01284 276 IDFFGFEYCAKNLRKIGEFFGIEERAERVIEEEMAKWKPELDWYKERL-RGKKV-WVWSGGPKLWHWPRPLEDELGMEVV 353 (457)
T ss_pred cccCCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHc-CCCEE-EEECCCcHHHHHHHHHHHhCCCEEE
Confidence 877788888655 666666654431 0 0 011112222 24454 2454431 3344565 6999875
Q ss_pred eEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEEEecCCCCCcc
Q 011347 381 GVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIP 445 (488)
Q Consensus 381 ~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ~FS 445 (488)
.+..-...+. .|+...... ..+. ++.+| .+..++++.+.+ .++|||+||+-....+
T Consensus 354 ~~~~~~~~~~---~~~~~~~~~-~~~~-~~i~d---~~~~e~~~~i~~-~~pDllig~~~~~~~a 409 (457)
T TIGR01284 354 AVSTKFGHED---DYEKIIARV-REGT-VIIDD---PNELELEEIIEK-YKPDIILTGIREGELA 409 (457)
T ss_pred EEEEEeCCHH---HHHHHHHhc-CCCe-EEEeC---CCHHHHHHHHHh-cCCCEEEecCCcchhh
Confidence 5333232222 222211111 1121 23333 344445544432 4699999999665544
No 242
>PRK10904 DNA adenine methylase; Provisional
Probab=26.53 E-value=37 Score=34.35 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=34.8
Q ss_pred hhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHH
Q 011347 344 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR 397 (488)
Q Consensus 344 ~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~ 397 (488)
++..|.+++|..-+.++-|+|.|+..+.+.. +.++.+|+|+.-.+.|+.
T Consensus 17 l~~~i~~~~P~~~~yvEPF~GggaV~l~~~~-----~~~ilND~n~~Lin~y~~ 65 (271)
T PRK10904 17 LLDDIKRHLPKGECLIEPFVGAGSVFLNTDF-----SRYILADINSDLISLYNI 65 (271)
T ss_pred HHHHHHHhCCCCCcEEeccCCcceeeEecCC-----CeEEEEeCCHHHHHHHHH
Confidence 4455566677656799999999988776532 235668999998777664
No 243
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=26.05 E-value=56 Score=36.93 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.8
Q ss_pred hhhHHhcCCCHHHHHHHHHHhCCC
Q 011347 4 TLQLLEMGFSENQVSLAIEKFGSK 27 (488)
Q Consensus 4 ~~~l~~mgf~~~e~~~ai~~~g~~ 27 (488)
+.+|+.||||++.+..|+-..|..
T Consensus 562 I~qL~~mGfp~~~~~rAL~~tgNq 585 (749)
T COG5207 562 IRQLVDMGFPEEDAARALGITGNQ 585 (749)
T ss_pred HHHHHHcCCCHHHHHHHHhhccCc
Confidence 468999999999999999999984
No 244
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=26.03 E-value=39 Score=34.01 Aligned_cols=47 Identities=19% Similarity=0.202 Sum_probs=32.3
Q ss_pred ccccccCCC-CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHH
Q 011347 346 SVLKSMFPG-GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR 397 (488)
Q Consensus 346 svLK~~fp~-~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~ 397 (488)
..+.+++|. .-+.++-|+|.|+..+.+.. . .++..|+|+.-...++.
T Consensus 16 ~~i~~~~p~~~~~yvEPF~Gggsv~l~~~~---~--~~~lND~n~~Li~~~~~ 63 (266)
T TIGR00571 16 PEIKKHLPKNFNCLVEPFVGGGAVFFNLNP---K--RYLLNDINEDLINLYKA 63 (266)
T ss_pred HHHHHhcCcccCEEEEecCCcchhheeecC---c--EEEEecCCHHHHHHHHH
Confidence 344555665 34799999998887765532 2 25668999998777664
No 245
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=25.76 E-value=44 Score=38.66 Aligned_cols=28 Identities=11% Similarity=0.303 Sum_probs=24.3
Q ss_pred cCCCCccccccccccchhhHHHHhhhhc
Q 011347 158 VAQPPYFFYGNVVDVSIDCWVKMSHFLY 185 (488)
Q Consensus 158 ~~~ppfF~fENV~~~~~~~w~~Is~fL~ 185 (488)
....||+.||-=.-=|...|+.||.++.
T Consensus 423 ~~r~~f~IfEDGRPWP~egWE~~StYr~ 450 (811)
T PF14872_consen 423 ARRLPFTIFEDGRPWPQEGWEEISTYRD 450 (811)
T ss_pred cceeEEEEecCCCcCCccchHHHHHHHH
Confidence 3456899999999999999999999874
No 246
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=25.20 E-value=44 Score=31.19 Aligned_cols=13 Identities=38% Similarity=0.774 Sum_probs=12.0
Q ss_pred hHHhcCCCHHHHH
Q 011347 6 QLLEMGFSENQVS 18 (488)
Q Consensus 6 ~l~~mgf~~~e~~ 18 (488)
+|+++|||++||+
T Consensus 5 RLl~~GFS~~eI~ 17 (140)
T PF13373_consen 5 RLLSAGFSPEEIQ 17 (140)
T ss_pred HHHHcCCCHHHHH
Confidence 6899999999997
No 247
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=24.78 E-value=2.3e+02 Score=27.39 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=18.5
Q ss_pred ceeccccccCh------hhHHHhhhccCCccEEEecC
Q 011347 409 VQIEDIQALTT------KKFESLIHKLGSIDFVICQN 439 (488)
Q Consensus 409 v~~~DI~~L~~------~~Ie~l~~~~g~~DLVIGGp 439 (488)
.+..|+++.+. +.+......+|.+|+||-..
T Consensus 56 ~~~~Dv~d~~~~~~~~~~~~~~~~~~~g~iD~lv~nA 92 (267)
T TIGR02685 56 TCQADLSNSATLFSRCEAIIDACFRAFGRCDVLVNNA 92 (267)
T ss_pred EEEccCCCchhhHHHHHHHHHHHHHccCCceEEEECC
Confidence 35578887652 12233334578999998543
No 248
>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M7 (snapalysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. With a molecular weight of around 16kDa, Streptomyces extracellular neutral protease is one of the smallest known proteases []; it is capable of hydrolysing milk proteins []. The enzyme is synthesised as a proenzyme with a signal peptide, a propeptide and an active domain that contains the conserved HEXXH motif characteristic of metalloproteases. Although family M7 shows active site sequence similarity to other members, it differs in one major respect: the third zinc ligand appears to be an aspartate residue rather than the usual histidine.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 1C7K_A 1KUH_A.
Probab=24.77 E-value=18 Score=33.62 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=12.0
Q ss_pred CChhhHHHHhcCCCCCcc
Q 011347 302 VDPEHIELILGYPSNHTQ 319 (488)
Q Consensus 302 le~~E~E~i~GfP~~~T~ 319 (488)
+..+|+=+|||+|++|+=
T Consensus 80 IaaHE~GHiLGLPD~y~G 97 (132)
T PF02031_consen 80 IAAHELGHILGLPDHYPG 97 (132)
T ss_dssp HHHHHHHHHHT----TTS
T ss_pred eeeehhccccCCCCCCCC
Confidence 448999999999999986
No 249
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=24.06 E-value=2.7e+02 Score=26.90 Aligned_cols=69 Identities=22% Similarity=0.230 Sum_probs=42.9
Q ss_pred cccccCCCCC--hhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347 357 TMLSVFSGIG--GAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 434 (488)
Q Consensus 357 tVLDLFSGiG--GlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL 434 (488)
+++|+=||+| |+-+++-.-..+ +.-+|-....+..++.--..-+-.+..++.+.|.+ ....+.||+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~---~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~---------~~~~~~fd~ 118 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQ---VTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE---------PEYRESFDV 118 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSE---EEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH---------TTTTT-EEE
T ss_pred eEEecCCCCCChhHHHHHhCCCCc---EEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc---------cccCCCccE
Confidence 8999999999 777777776554 56789999988877754433333333344444443 112357888
Q ss_pred EEe
Q 011347 435 VIC 437 (488)
Q Consensus 435 VIG 437 (488)
|+.
T Consensus 119 v~a 121 (184)
T PF02527_consen 119 VTA 121 (184)
T ss_dssp EEE
T ss_pred EEe
Confidence 873
No 250
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=23.55 E-value=3.5e+02 Score=29.70 Aligned_cols=144 Identities=18% Similarity=0.169 Sum_probs=73.6
Q ss_pred cccceeeecccccCCCChhhHHHHhcCCCCCccccCCChHHHH-HhhhhhcccCcc-------hh-------hhcccccc
Q 011347 287 EKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARL-ESLRHCFQTDTL-------GY-------HLSVLKSM 351 (488)
Q Consensus 287 ~k~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~l~~teR~-k~Lgnsfqvdti-------~~-------~lsvLK~~ 351 (488)
-+.|+|- +..- .......||+-||-|..+....|+..|++. +.|...+..+.. .. .+...+.+
T Consensus 255 A~lniv~-~~~~-~~~~A~~Le~~fGiP~~~~~~~Gi~~T~~~Lr~ia~~~g~~i~~~~e~~I~~e~~~~~~~ld~~~~~ 332 (466)
T TIGR01282 255 AKLNLIH-CYRS-MNYISRHMEEKYGIPWMEYNFFGPTKIAESLRKIAEFFDDEIKEKAEEVIAKYQPAVDAVIAKYRPR 332 (466)
T ss_pred CCEEEEE-ChHH-HHHHHHHHHHHhCCceEeCCCCCHHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567774 2111 112367899999999977776788888655 666666642211 11 12222333
Q ss_pred CCCCCcccccCCCCC---hhHHHHHHcCCeeeeEEEeeC--CHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhh
Q 011347 352 FPGGLTMLSVFSGIG---GAEVTLHRLGIKLKGVISIET--SETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI 426 (488)
Q Consensus 352 fp~~itVLDLFSGiG---GlslGL~~aGi~~k~vvsVEi--d~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~ 426 (488)
+ .|-+| =+|.|.. .+...|..+|+++ ++++... ++...+..+. . ..+. ++.. +.+..++++++
T Consensus 333 L-~GKrv-~i~~g~~~~~~~~~~l~ELGmev-v~~g~~~~~~~~~~~~~~~----~-~~~~-~i~~---~~d~~el~~~i 400 (466)
T TIGR01282 333 L-EGKTV-MLYVGGLRPRHVIGAFEDLGMEV-IGTGYEFAHNDDYERTTKY----M-KDGT-LIYD---DVTHYEFEEFV 400 (466)
T ss_pred c-CCCEE-EEECCCCcHHHHHHHHHHCCCEE-EEEeeecCCHHHHHHHHHh----c-CCCe-EEee---CCCHHHHHHHH
Confidence 3 33442 3344322 2233577899986 3444543 2222222211 0 1111 2222 23344555554
Q ss_pred hccCCccEEEecCCCCCcc
Q 011347 427 HKLGSIDFVICQNSVPQIP 445 (488)
Q Consensus 427 ~~~g~~DLVIGGpPCQ~FS 445 (488)
.+ .++||++||+--...+
T Consensus 401 ~~-~~pDl~ig~~~~~~~a 418 (466)
T TIGR01282 401 EK-LKPDLVGSGIKEKYVF 418 (466)
T ss_pred HH-hCCCEEEecCCcccee
Confidence 32 4799999999776555
No 251
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=23.26 E-value=2.3e+02 Score=25.44 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=49.0
Q ss_pred CCCCcccccCCCCChhHHHHHH----cCCeeeeEEEeeCCHHHHHHHHHHhhhcC--C-CCCcceeccccccChhhHHHh
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHR----LGIKLKGVISIETSETNRRILKRWWESSG--Q-TGELVQIEDIQALTTKKFESL 425 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~----aGi~~k~vvsVEid~~a~~t~~~~~~~~n--~-~g~lv~~~DI~~L~~~~Ie~l 425 (488)
....+|+|+=||-|=++..|.. ..... -|++||.++...+....+-.... . ........++....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------- 95 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNL-RVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES------- 95 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCC-eEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-------
Confidence 3568899999999988777766 12333 36789999887665544322211 0 00001112221111
Q ss_pred hhccCCccEEEecCCCCCcc
Q 011347 426 IHKLGSIDFVICQNSVPQIP 445 (488)
Q Consensus 426 ~~~~g~~DLVIGGpPCQ~FS 445 (488)
.....++++|==-|-+.|
T Consensus 96 --~~~~~~~~vgLHaCG~Ls 113 (141)
T PF13679_consen 96 --SSDPPDILVGLHACGDLS 113 (141)
T ss_pred --ccCCCeEEEEeecccchH
Confidence 135778999988888887
No 252
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=22.87 E-value=72 Score=25.94 Aligned_cols=19 Identities=37% Similarity=0.585 Sum_probs=15.8
Q ss_pred hhHHhcCCCHHHHHHHHHH
Q 011347 5 LQLLEMGFSENQVSLAIEK 23 (488)
Q Consensus 5 ~~l~~mgf~~~e~~~ai~~ 23 (488)
.-|++|||++-+|..-|-.
T Consensus 7 ~dLi~lGf~~~tA~~IIrq 25 (59)
T PF11372_consen 7 KDLIELGFSESTARDIIRQ 25 (59)
T ss_pred HHHHHcCCCHHHHHHHHHH
Confidence 5699999999999876654
No 253
>PF08587 UBA_2: Ubiquitin associated domain (UBA) ; InterPro: IPR013896 This is a UBA (ubiquitin associated) protein []. Ubiquitin is involved in intracellular proteolysis. ; GO: 0004674 protein serine/threonine kinase activity; PDB: 3H4J_B.
Probab=22.66 E-value=22 Score=27.56 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=11.6
Q ss_pred HhcCCCHHHHHHHHHH
Q 011347 8 LEMGFSENQVSLAIEK 23 (488)
Q Consensus 8 ~~mgf~~~e~~~ai~~ 23 (488)
..|||..+||-.||++
T Consensus 11 ~tMGY~kdeI~eaL~~ 26 (46)
T PF08587_consen 11 KTMGYDKDEIYEALES 26 (46)
T ss_dssp CTT---HHHHHHHCCS
T ss_pred HHhCCCHHHHHHHHHc
Confidence 3699999999999998
No 254
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=22.43 E-value=1.5e+02 Score=29.59 Aligned_cols=79 Identities=14% Similarity=0.242 Sum_probs=46.7
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcC----CCCCcceeccccccChhhHHHhhhc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHK 428 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n----~~g~lv~~~DI~~L~~~~Ie~l~~~ 428 (488)
|+.-+||-|=.|.||....+.+.. .++-+..||||+...+..++|+.... .+...++.+|-.. ++..
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~--------~l~~ 145 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRK--------FLKE 145 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHH--------HHHT
T ss_pred CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHH--------HHHh
Confidence 355677777677777777666554 24567889999999999998875321 1122234454432 2222
Q ss_pred -cC-CccEEEecCC
Q 011347 429 -LG-SIDFVICQNS 440 (488)
Q Consensus 429 -~g-~~DLVIGGpP 440 (488)
.. .+|+||--.+
T Consensus 146 ~~~~~yDvIi~D~~ 159 (246)
T PF01564_consen 146 TQEEKYDVIIVDLT 159 (246)
T ss_dssp SSST-EEEEEEESS
T ss_pred ccCCcccEEEEeCC
Confidence 23 6999987554
No 255
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=22.02 E-value=2.8e+02 Score=27.11 Aligned_cols=77 Identities=18% Similarity=0.167 Sum_probs=44.3
Q ss_pred CCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCC-cceeccccccChhhHHHhhhc--cC
Q 011347 355 GLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFESLIHK--LG 430 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~-lv~~~DI~~L~~~~Ie~l~~~--~g 430 (488)
.-+||++=+++|=-++.+-++ +=.- -++++|+|+...++.+.+|...+.... .++.+|-.+ .|.++... .+
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g-~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~----~l~~l~~~~~~~ 120 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDG-KITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALE----VLPELANDGEEG 120 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTS-EEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHH----HHHHHHHTTTTT
T ss_pred CceEEEeccccccHHHHHHHhhcccc-eEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHh----hHHHHHhccCCC
Confidence 357888866666555555442 1111 378999999999999999886543211 123343322 23333332 36
Q ss_pred CccEEE
Q 011347 431 SIDFVI 436 (488)
Q Consensus 431 ~~DLVI 436 (488)
.||+|+
T Consensus 121 ~fD~VF 126 (205)
T PF01596_consen 121 QFDFVF 126 (205)
T ss_dssp SEEEEE
T ss_pred ceeEEE
Confidence 899886
No 256
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.01 E-value=1.5e+02 Score=30.91 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=20.4
Q ss_pred CcceeccccccCh--hhHHHhhhccCCccEEE
Q 011347 407 ELVQIEDIQALTT--KKFESLIHKLGSIDFVI 436 (488)
Q Consensus 407 ~lv~~~DI~~L~~--~~Ie~l~~~~g~~DLVI 436 (488)
.++...||.+.+. .-++.....+|++|++|
T Consensus 65 v~~~~~Dvs~~~~~~~~~~~~~~~fg~vDvLV 96 (282)
T KOG1205|consen 65 VLVLQLDVSDEESVKKFVEWAIRHFGRVDVLV 96 (282)
T ss_pred cEEEeCccCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 4566789987763 22333445789999998
No 257
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=21.75 E-value=1.2e+02 Score=30.60 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=26.4
Q ss_pred cccccCCCCChhHHH-HHHcCCeeeeEEEeeCCHHHHHHHHH
Q 011347 357 TMLSVFSGIGGAEVT-LHRLGIKLKGVISIETSETNRRILKR 397 (488)
Q Consensus 357 tVLDLFSGiGGlslG-L~~aGi~~k~vvsVEid~~a~~t~~~ 397 (488)
++.||=+|.|=+++- -|.| +-|+|+|.|+.-.+..+.
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~A----~rViAiE~dPk~a~~a~e 72 (252)
T COG4076 35 TFADLGAGSGILSVVAAHAA----ERVIAIEKDPKRARLAEE 72 (252)
T ss_pred ceeeccCCcchHHHHHHhhh----ceEEEEecCcHHHHHhhh
Confidence 467888888888754 4444 458999999986555544
No 258
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=21.72 E-value=33 Score=38.76 Aligned_cols=37 Identities=27% Similarity=0.634 Sum_probs=25.5
Q ss_pred cccccccccccCCCCCCCCCCCCCCCc-ccccccCCCccCCCcCC
Q 011347 199 ALSRREGYLHNLPTTNRFHIPPEPPMT-IQDAIPHTKKWWPSWDT 242 (488)
Q Consensus 199 Aa~R~RgY~hNLP~~nR~~~~p~~p~t-iqd~lp~~~~~wp~wd~ 242 (488)
|.+-||+||.|=. ++..|-. +..|=++.-+|||.|..
T Consensus 488 P~~~k~~y~~~~~-------~~~~~~~W~~~a~~~~GSWW~~W~~ 525 (560)
T TIGR01839 488 PGNPKARYMTNAK-------LSSDPRAWQEDAKRHEGSWWPHWLS 525 (560)
T ss_pred CCCCCCceeeCCC-------CCCCHHHHHhcCCcCCCCchHhHHH
Confidence 5778999999841 2233333 55566788899999865
No 259
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=21.46 E-value=2e+02 Score=31.47 Aligned_cols=137 Identities=17% Similarity=0.184 Sum_probs=71.3
Q ss_pred cccceeeecccccCCCChhhHHHHhcCCCCCc-cccCCChHHHH-HhhhhhcccCc---c----hhhhcccccc--CCCC
Q 011347 287 EKLNLVWVGAYKLGPVDPEHIELILGYPSNHT-QAAGNSLTARL-ESLRHCFQTDT---L----GYHLSVLKSM--FPGG 355 (488)
Q Consensus 287 ~k~nlvW~g~~~~~ple~~E~E~i~GfP~~~T-~~~~l~~teR~-k~Lgnsfqvdt---i----~~~lsvLK~~--fp~~ 355 (488)
-+.|+|- ++. .--....||+-||-|--+. ...|+..+++. +.|+..+..+. + +..+..+.++ +-.+
T Consensus 235 A~lniv~-~~~--~~~~a~~Lee~~GiP~~~~~~p~G~~~t~~~l~~l~~~~g~~~~~~i~~er~~~~~~~~d~~~~l~g 311 (455)
T PRK14476 235 SAATIAI-GES--MRKAAEALEARTGVPYLVFPSLTGLEAVDRFIATLAQISGRPVPAKYRRQRAQLQDAMLDGHFYFGG 311 (455)
T ss_pred CcEEEEe-cHH--HHHHHHHHHHHhCCCeEecCCCcChHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3457773 322 2234778999999997654 44577777554 66666553322 1 1112222221 1134
Q ss_pred CcccccCCCC---ChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 356 LTMLSVFSGI---GGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 356 itVLDLFSGi---GGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+| -++.|. -|+.-.|..+|+.+..++.-+.++ .++. . ...+ ++.+|.+ ++++.+. ++
T Consensus 312 krv-ai~~~~~~~~~la~~L~elG~~v~~~~~~~~~~----~~~~----~-~~~~-i~~~D~~-----~le~~~~---~~ 372 (455)
T PRK14476 312 KRV-AIAAEPDLLLALGSFLAEMGAEIVAAVTTTKSP----ALED----L-PAEE-VLIGDLE-----DLEELAE---GA 372 (455)
T ss_pred CEE-EEEeCHHHHHHHHHHHHHCCCEEEEEEeCCCcH----HHHh----C-CcCc-EEeCCHH-----HHHHhcc---CC
Confidence 444 233332 244555679999887666544322 2221 1 1112 3345544 4555432 79
Q ss_pred cEEEecCCCCCcc
Q 011347 433 DFVICQNSVPQIP 445 (488)
Q Consensus 433 DLVIGGpPCQ~FS 445 (488)
|||+|++--...+
T Consensus 373 dliig~s~~~~~a 385 (455)
T PRK14476 373 DLLITNSHGRQAA 385 (455)
T ss_pred CEEEECchhHHHH
Confidence 9999998655444
No 260
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=21.30 E-value=34 Score=38.28 Aligned_cols=43 Identities=26% Similarity=0.603 Sum_probs=28.6
Q ss_pred ecccc-----CcccccccccccCCCCCCCCCCCCCCCc-ccccccCCCccCCCcCC
Q 011347 193 NSQYF-----SALSRREGYLHNLPTTNRFHIPPEPPMT-IQDAIPHTKKWWPSWDT 242 (488)
Q Consensus 193 ds~~f-----sAa~R~RgY~hNLP~~nR~~~~p~~p~t-iqd~lp~~~~~wp~wd~ 242 (488)
+|.|. .+.+-||+||.| . . +|..|-+ +..|=++.-+|||.|..
T Consensus 451 ~sGHi~~ienPp~~~k~~y~~~--~-~----~~~~~~~w~~~a~~~~gSWW~~w~~ 499 (532)
T TIGR01838 451 ESGHIAGVVNPPSKNKYGHWTN--A-A----LPADPEVWLAGATEHPGSWWPDWAA 499 (532)
T ss_pred CCCCchHhhCCCCCCCCceeeC--C-C----CCCCHHHHHhcCCcCCCCchHhHHH
Confidence 45555 457889999999 1 1 2233433 55566788899998864
No 261
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=21.12 E-value=2e+02 Score=29.51 Aligned_cols=68 Identities=26% Similarity=0.360 Sum_probs=39.0
Q ss_pred CCCChh-HHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccCh--hhHHHhhhccCCccEEE
Q 011347 363 SGIGGA-EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT--KKFESLIHKLGSIDFVI 436 (488)
Q Consensus 363 SGiGGl-slGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~--~~Ie~l~~~~g~~DLVI 436 (488)
||||=+ ...|.++|+++ +.+.-.....+.+..-+ .+...+.+.-||++-.. .-++.+..+|+++|+++
T Consensus 16 SGiG~A~A~~l~~~G~~v---vl~aRR~drL~~la~~~---~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDiLv 86 (246)
T COG4221 16 SGIGEATARALAEAGAKV---VLAARREERLEALADEI---GAGAALALALDVTDRAAVEAAIEALPEEFGRIDILV 86 (246)
T ss_pred chHHHHHHHHHHHCCCeE---EEEeccHHHHHHHHHhh---ccCceEEEeeccCCHHHHHHHHHHHHHhhCcccEEE
Confidence 566633 46688999864 34445555444443211 11123455678886543 22444556889999998
No 262
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=21.08 E-value=2.1e+02 Score=29.49 Aligned_cols=63 Identities=19% Similarity=0.196 Sum_probs=42.5
Q ss_pred CCCcccccCCCCChhHHHHHH-cCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-Ccceecccccc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQAL 417 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~-aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L 417 (488)
.+.+||+-=.|.|-++..|-+ .|= .--|+++|+.++..++-+.|........ ..+..+||++.
T Consensus 94 pg~rVlEAGtGSG~lt~~La~~vg~-~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~ 158 (256)
T COG2519 94 PGSRVLEAGTGSGALTAYLARAVGP-EGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREG 158 (256)
T ss_pred CCCEEEEcccCchHHHHHHHHhhCC-CceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccc
Confidence 478899988888989888885 231 1237899999998888777665542222 22344676654
No 263
>PHA01634 hypothetical protein
Probab=21.01 E-value=2.6e+02 Score=26.66 Aligned_cols=42 Identities=19% Similarity=0.112 Sum_probs=35.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHH
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR 397 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~ 397 (488)
++-+|+|+=++||--++=|--.|-+ -|+++|.++..++.++.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK--~Vva~E~~~kl~k~~ee 69 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGAS--FVVQYEKEEKLRKKWEE 69 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCcc--EEEEeccCHHHHHHHHH
Confidence 4568999999999999999999974 58999999998777764
No 264
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=20.30 E-value=3.6e+02 Score=32.33 Aligned_cols=130 Identities=14% Similarity=0.190 Sum_probs=66.9
Q ss_pred hhhHHHHhcCCCCCccccCCChHHHH-HhhhhhcccC---------------cc-------hhhhccccccCCCCCcccc
Q 011347 304 PEHIELILGYPSNHTQAAGNSLTARL-ESLRHCFQTD---------------TL-------GYHLSVLKSMFPGGLTMLS 360 (488)
Q Consensus 304 ~~E~E~i~GfP~~~T~~~~l~~teR~-k~Lgnsfqvd---------------ti-------~~~lsvLK~~fp~~itVLD 360 (488)
...||+-||-|.-.....|+..+++. +.|...+..+ .+ ...+...+.++ .+-+|+
T Consensus 247 A~~Le~~fGiP~~~~~p~Gi~~T~~~L~~ia~~~g~~~~~~~~~~~~~~~e~~i~~e~~~~~~~l~~~~~~L-~GKrv~- 324 (917)
T PRK14477 247 ARKMEKRYGIPYLEESFYGMTDTAKALRDIARELDDAGGGLEKRVLQDRVEKLIAEEEAKCRAALAPYRARL-EGKRVV- 324 (917)
T ss_pred HHHHHHHhCCCEEecCccCHHHHHHHHHHHHHHhCCcccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCEEE-
Confidence 67889999999766666677777664 6666555321 11 11122222222 233333
Q ss_pred cCCCCC---hhHHHHHHcCCeeeeEEEeeCC-HHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEEE
Q 011347 361 VFSGIG---GAEVTLHRLGIKLKGVISIETS-ETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI 436 (488)
Q Consensus 361 LFSGiG---GlslGL~~aGi~~k~vvsVEid-~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVI 436 (488)
+|.|.. ++...|..+|+++.. ++.... ......++... ..+.. + |.+.+..++++++.+ -++||++
T Consensus 325 i~~g~~~~~~la~~l~elGmevv~-~g~~~~~~~d~~~~~~~~----~~~~~-v---i~~~d~~el~~~i~~-~~pDLli 394 (917)
T PRK14477 325 LFTGGVKTWSMVNALRELGVEVLA-AGTQNSTLEDFARMKALM----HKDAH-I---IEDTSTAGLLRVMRE-KMPDLIV 394 (917)
T ss_pred EECCCchHHHHHHHHHHCCCEEEE-EcCCCCCHHHHHHHHHhc----CCCCE-E---EECCCHHHHHHHHHh-cCCCEEE
Confidence 344432 667778899998633 333322 21111121110 11111 1 223344555554432 4799999
Q ss_pred ecCCCCCcc
Q 011347 437 CQNSVPQIP 445 (488)
Q Consensus 437 GGpPCQ~FS 445 (488)
||+-..-.+
T Consensus 395 g~~~~~~~a 403 (917)
T PRK14477 395 AGGKTKFLA 403 (917)
T ss_pred ecCchhhHH
Confidence 999776655
No 265
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=20.27 E-value=3.3e+02 Score=28.94 Aligned_cols=46 Identities=28% Similarity=0.208 Sum_probs=33.9
Q ss_pred chhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHH
Q 011347 341 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR 393 (488)
Q Consensus 341 i~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~ 393 (488)
+.-|++.| .+-+|||+=||.|-.+.-+..+|- +.|+++|-+.....
T Consensus 107 l~p~l~~L-----~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~ 152 (315)
T PF08003_consen 107 LLPHLPDL-----KGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYL 152 (315)
T ss_pred HHhhhCCc-----CCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHH
Confidence 34456555 457899999999998888888886 45888887766533
Done!