Query 011347
Match_columns 488
No_of_seqs 212 out of 1027
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 06:14:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011347.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011347hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ubt_Y Modification methylase 99.9 3E-27 1E-31 233.5 8.0 105 356-487 1-105 (331)
2 2qrv_A DNA (cytosine-5)-methyl 99.9 7.1E-26 2.4E-30 226.1 11.8 116 351-486 12-127 (295)
3 3qv2_A 5-cytosine DNA methyltr 99.9 1.9E-24 6.6E-29 218.4 8.5 118 347-487 2-125 (327)
4 4h0n_A DNMT2; SAH binding, tra 99.9 3.1E-24 1.1E-28 217.2 9.8 111 355-487 3-114 (333)
5 3me5_A Cytosine-specific methy 99.9 2.6E-24 8.9E-29 227.9 9.5 125 355-487 88-222 (482)
6 3g7u_A Cytosine-specific methy 99.9 6.1E-24 2.1E-28 218.1 9.1 113 355-487 2-114 (376)
7 2c7p_A Modification methylase 99.9 2.1E-23 7.2E-28 210.3 11.5 106 354-487 10-115 (327)
8 4ft4_B DNA (cytosine-5)-methyl 99.9 6E-24 2E-28 233.9 7.5 122 353-487 210-427 (784)
9 1g55_A DNA cytosine methyltran 99.9 2.4E-23 8.3E-28 210.4 9.0 111 355-487 2-114 (343)
10 4dkj_A Cytosine-specific methy 99.9 9.2E-23 3.1E-27 211.7 6.9 111 354-482 9-167 (403)
11 3swr_A DNA (cytosine-5)-methyl 99.8 1.2E-20 4.2E-25 214.1 5.8 119 353-487 538-664 (1002)
12 3av4_A DNA (cytosine-5)-methyl 99.8 1.3E-20 4.4E-25 218.6 3.5 118 354-487 850-975 (1330)
13 2qrv_B DNA (cytosine-5)-methyl 99.8 4.9E-20 1.7E-24 179.0 6.3 86 354-486 32-117 (230)
14 2pv0_B DNA (cytosine-5)-methyl 99.8 7.2E-19 2.5E-23 181.5 7.8 88 352-486 186-273 (386)
15 2qrv_A DNA (cytosine-5)-methyl 99.6 2.5E-15 8.5E-20 150.0 10.6 157 163-352 135-292 (295)
16 4h0n_A DNMT2; SAH binding, tra 99.5 4.5E-15 1.5E-19 150.2 2.4 177 160-349 111-332 (333)
17 3qv2_A 5-cytosine DNA methyltr 99.4 1.9E-14 6.5E-19 145.4 1.7 178 160-352 122-325 (327)
18 4dkj_A Cytosine-specific methy 99.0 1.4E-10 4.9E-15 120.4 3.6 185 159-354 176-394 (403)
19 3ubt_Y Modification methylase 99.0 4.6E-11 1.6E-15 117.8 -0.2 192 158-350 100-322 (331)
20 3me5_A Cytosine-specific methy 98.9 1.5E-09 5.1E-14 115.3 7.5 177 158-352 217-456 (482)
21 2c7p_A Modification methylase 98.9 1.6E-09 5.6E-14 109.2 6.7 183 158-350 110-320 (327)
22 1g55_A DNA cytosine methyltran 98.8 5.1E-09 1.7E-13 105.8 7.4 54 295-348 288-341 (343)
23 2qrv_B DNA (cytosine-5)-methyl 98.7 2.7E-09 9.1E-14 103.8 1.7 54 161-215 123-176 (230)
24 4ft4_B DNA (cytosine-5)-methyl 98.4 2.5E-07 8.5E-12 102.1 7.2 55 288-344 679-733 (784)
25 3g7u_A Cytosine-specific methy 98.2 6E-07 2E-11 92.2 4.1 52 296-349 313-364 (376)
26 2igt_A SAM dependent methyltra 97.9 2.4E-05 8E-10 78.7 9.3 85 354-445 153-239 (332)
27 3c0k_A UPF0064 protein YCCW; P 97.9 2.8E-05 9.6E-10 79.1 9.6 86 354-445 220-307 (396)
28 2pv0_B DNA (cytosine-5)-methyl 97.9 9.1E-06 3.1E-10 84.3 4.8 55 161-216 279-333 (386)
29 3gdh_A Trimethylguanosine synt 97.8 4.7E-05 1.6E-09 70.7 7.7 81 354-446 78-159 (241)
30 1wy7_A Hypothetical protein PH 97.8 8.1E-05 2.8E-09 67.3 8.9 78 354-445 49-126 (207)
31 3k6r_A Putative transferase PH 97.7 3.5E-05 1.2E-09 76.3 6.7 82 351-443 122-204 (278)
32 2frn_A Hypothetical protein PH 97.7 6.1E-05 2.1E-09 73.0 7.5 80 353-443 124-204 (278)
33 3swr_A DNA (cytosine-5)-methyl 97.6 7.4E-05 2.5E-09 85.7 7.9 47 297-345 945-991 (1002)
34 1ws6_A Methyltransferase; stru 97.5 0.00017 5.9E-09 62.4 7.1 83 352-442 39-121 (171)
35 3p9n_A Possible methyltransfer 97.5 0.0001 3.6E-09 66.1 5.9 81 354-442 44-124 (189)
36 2b78_A Hypothetical protein SM 97.5 0.00028 9.6E-09 71.9 9.3 86 354-445 212-299 (385)
37 2yx1_A Hypothetical protein MJ 97.5 0.00024 8.2E-09 71.0 8.3 76 353-443 194-270 (336)
38 3a27_A TYW2, uncharacterized p 97.5 0.00026 8.7E-09 68.5 8.2 80 352-441 117-196 (272)
39 3ajd_A Putative methyltransfer 97.4 0.00015 5.3E-09 69.9 6.5 88 354-447 83-172 (274)
40 2ift_A Putative methylase HI07 97.4 0.00018 6.1E-09 66.0 6.3 80 354-441 53-135 (201)
41 4dmg_A Putative uncharacterize 97.4 0.00018 6.1E-09 74.2 6.8 77 354-441 214-290 (393)
42 2fpo_A Methylase YHHF; structu 97.4 0.00022 7.5E-09 65.5 6.6 78 354-440 54-131 (202)
43 2as0_A Hypothetical protein PH 97.3 0.00042 1.4E-08 70.3 8.5 86 354-445 217-303 (396)
44 1ne2_A Hypothetical protein TA 97.3 0.00055 1.9E-08 61.7 7.4 74 354-445 51-124 (200)
45 3lpm_A Putative methyltransfer 97.2 0.0008 2.7E-08 63.8 8.4 83 354-444 49-132 (259)
46 1wxx_A TT1595, hypothetical pr 97.2 0.00067 2.3E-08 68.7 8.2 85 354-445 209-293 (382)
47 3evz_A Methyltransferase; NYSG 97.2 0.001 3.5E-08 61.0 8.5 83 352-445 53-137 (230)
48 3bt7_A TRNA (uracil-5-)-methyl 97.2 0.00054 1.9E-08 69.2 7.1 84 355-445 214-309 (369)
49 3v97_A Ribosomal RNA large sub 97.1 0.001 3.6E-08 73.3 8.7 83 354-445 539-623 (703)
50 1ixk_A Methyltransferase; open 97.1 0.0012 4E-08 65.4 8.1 86 354-447 118-203 (315)
51 2fhp_A Methylase, putative; al 97.0 0.0016 5.5E-08 57.2 7.8 81 354-440 44-125 (187)
52 2jjq_A Uncharacterized RNA met 97.0 0.0013 4.5E-08 68.3 8.3 78 353-444 289-366 (425)
53 3grz_A L11 mtase, ribosomal pr 97.0 0.0011 3.7E-08 59.9 6.8 85 347-443 53-137 (205)
54 2b3t_A Protein methyltransfera 97.0 0.0015 5.2E-08 62.4 7.9 80 354-445 109-190 (276)
55 3mti_A RRNA methylase; SAM-dep 97.0 0.0016 5.4E-08 57.7 7.4 84 348-441 16-99 (185)
56 3tma_A Methyltransferase; thum 97.0 0.0033 1.1E-07 62.5 10.5 81 353-442 202-283 (354)
57 2b9e_A NOL1/NOP2/SUN domain fa 97.0 0.0016 5.6E-08 64.8 8.2 88 354-447 102-190 (309)
58 2esr_A Methyltransferase; stru 96.9 0.0013 4.5E-08 57.8 6.6 79 354-441 31-110 (177)
59 4dzr_A Protein-(glutamine-N5) 96.9 0.00052 1.8E-08 61.2 4.0 87 353-445 29-115 (215)
60 2h00_A Methyltransferase 10 do 96.9 0.002 6.9E-08 60.3 8.2 86 354-445 65-154 (254)
61 3av4_A DNA (cytosine-5)-methyl 96.9 0.0015 5.1E-08 76.9 8.4 50 159-208 971-1029(1330)
62 1nv8_A HEMK protein; class I a 96.9 0.0023 8E-08 62.4 8.4 83 354-446 123-207 (284)
63 3axs_A Probable N(2),N(2)-dime 96.9 0.0013 4.3E-08 68.2 6.6 80 354-443 52-137 (392)
64 3tm4_A TRNA (guanine N2-)-meth 96.9 0.0034 1.2E-07 63.5 9.7 80 353-441 216-296 (373)
65 2vdv_E TRNA (guanine-N(7)-)-me 96.8 0.002 6.7E-08 60.6 7.1 85 354-444 49-141 (246)
66 3m4x_A NOL1/NOP2/SUN family pr 96.7 0.0016 5.3E-08 68.7 6.4 86 354-447 105-191 (456)
67 1uwv_A 23S rRNA (uracil-5-)-me 96.7 0.0034 1.2E-07 64.9 8.3 85 354-445 286-370 (433)
68 1dus_A MJ0882; hypothetical pr 96.7 0.0039 1.3E-07 54.5 7.5 77 354-442 52-130 (194)
69 2h1r_A Dimethyladenosine trans 96.6 0.0024 8.3E-08 62.7 6.5 100 330-444 18-119 (299)
70 1ve3_A Hypothetical protein PH 96.6 0.0045 1.5E-07 56.0 7.8 77 352-440 36-112 (227)
71 3m6w_A RRNA methylase; rRNA me 96.6 0.0029 9.8E-08 66.9 7.2 85 354-447 101-186 (464)
72 3ll7_A Putative methyltransfer 96.6 0.0034 1.2E-07 65.5 7.5 79 355-442 94-174 (410)
73 3lbf_A Protein-L-isoaspartate 96.6 0.0074 2.5E-07 54.4 8.8 81 353-444 76-156 (210)
74 2frx_A Hypothetical protein YE 96.6 0.0035 1.2E-07 66.2 7.6 86 354-447 117-203 (479)
75 2dul_A N(2),N(2)-dimethylguano 96.6 0.0025 8.5E-08 65.3 6.2 79 354-442 47-142 (378)
76 1zq9_A Probable dimethyladenos 96.5 0.0029 1E-07 61.7 6.4 78 354-444 28-106 (285)
77 2f8l_A Hypothetical protein LM 96.5 0.0025 8.7E-08 63.2 5.6 80 354-443 130-213 (344)
78 3dmg_A Probable ribosomal RNA 96.5 0.0055 1.9E-07 62.7 8.3 77 354-442 233-309 (381)
79 2ozv_A Hypothetical protein AT 96.5 0.0044 1.5E-07 59.2 6.9 89 354-444 36-128 (260)
80 2pxx_A Uncharacterized protein 96.5 0.005 1.7E-07 55.0 6.8 82 348-441 36-117 (215)
81 3k0b_A Predicted N6-adenine-sp 96.5 0.0052 1.8E-07 63.2 7.8 80 353-441 200-317 (393)
82 3m70_A Tellurite resistance pr 96.4 0.0068 2.3E-07 57.6 7.9 76 354-442 120-195 (286)
83 3ldu_A Putative methylase; str 96.4 0.0038 1.3E-07 63.9 6.4 79 353-440 194-310 (385)
84 2yxd_A Probable cobalt-precorr 96.4 0.0072 2.4E-07 52.4 7.2 75 354-440 35-109 (183)
85 3q87_B N6 adenine specific DNA 96.4 0.0026 8.9E-08 56.7 4.4 70 354-445 23-92 (170)
86 3gru_A Dimethyladenosine trans 96.3 0.0044 1.5E-07 61.7 6.2 98 330-442 26-125 (295)
87 2yxl_A PH0851 protein, 450AA l 96.3 0.0079 2.7E-07 62.4 8.3 88 354-447 259-346 (450)
88 2pbf_A Protein-L-isoaspartate 96.3 0.011 3.8E-07 54.0 8.4 96 345-444 71-175 (227)
89 3fut_A Dimethyladenosine trans 96.3 0.0077 2.6E-07 59.1 7.8 75 354-442 47-121 (271)
90 3l8d_A Methyltransferase; stru 96.3 0.0056 1.9E-07 56.0 6.3 82 344-439 43-124 (242)
91 3eey_A Putative rRNA methylase 96.3 0.0043 1.5E-07 55.4 5.3 82 352-441 20-103 (197)
92 3e05_A Precorrin-6Y C5,15-meth 96.3 0.012 4.2E-07 53.0 8.2 80 354-442 40-119 (204)
93 3ldg_A Putative uncharacterize 96.2 0.0073 2.5E-07 62.0 7.5 80 353-441 193-310 (384)
94 2nxc_A L11 mtase, ribosomal pr 96.2 0.0053 1.8E-07 58.4 6.0 75 353-440 119-193 (254)
95 3tqs_A Ribosomal RNA small sub 96.2 0.0044 1.5E-07 60.1 5.4 99 330-440 5-105 (255)
96 3cgg_A SAM-dependent methyltra 96.2 0.0078 2.7E-07 52.5 6.5 76 352-443 44-119 (195)
97 2xvm_A Tellurite resistance pr 96.2 0.013 4.5E-07 51.6 7.9 75 354-440 32-106 (199)
98 1yzh_A TRNA (guanine-N(7)-)-me 96.2 0.011 3.7E-07 54.0 7.5 82 354-442 41-122 (214)
99 1sqg_A SUN protein, FMU protei 96.2 0.0086 2.9E-07 61.6 7.6 86 354-447 246-331 (429)
100 1i1n_A Protein-L-isoaspartate 96.2 0.011 3.7E-07 54.1 7.4 91 345-444 68-164 (226)
101 3njr_A Precorrin-6Y methylase; 96.2 0.014 4.7E-07 53.7 8.2 75 354-439 55-130 (204)
102 2ih2_A Modification methylase 96.1 0.0026 9.1E-08 63.8 3.5 96 330-446 16-113 (421)
103 3sm3_A SAM-dependent methyltra 96.1 0.0097 3.3E-07 53.8 6.7 85 347-442 23-112 (235)
104 3e23_A Uncharacterized protein 96.1 0.016 5.5E-07 52.2 8.0 70 352-439 41-110 (211)
105 1ify_A HHR23A, UV excision rep 96.0 0.0054 1.9E-07 45.8 3.7 37 2-40 10-46 (49)
106 3pfg_A N-methyltransferase; N, 96.0 0.0074 2.5E-07 56.5 5.6 77 346-439 42-118 (263)
107 2kw5_A SLR1183 protein; struct 95.9 0.012 4.2E-07 52.5 6.6 73 353-438 29-101 (202)
108 3mb5_A SAM-dependent methyltra 95.9 0.017 5.7E-07 53.8 7.7 79 354-442 93-173 (255)
109 1y8c_A S-adenosylmethionine-de 95.9 0.017 5.7E-07 52.6 7.4 74 353-439 36-109 (246)
110 1vbf_A 231AA long hypothetical 95.9 0.019 6.6E-07 52.4 7.8 80 353-445 69-148 (231)
111 2g3q_A Protein YBL047C; endocy 95.8 0.0084 2.9E-07 43.2 4.1 36 2-39 6-41 (43)
112 1l3i_A Precorrin-6Y methyltran 95.8 0.016 5.6E-07 50.3 6.7 79 354-443 33-112 (192)
113 2ekk_A UBA domain from E3 ubiq 95.8 0.0056 1.9E-07 45.1 3.0 35 2-39 11-45 (47)
114 2qm3_A Predicted methyltransfe 95.8 0.018 6.1E-07 58.0 7.8 81 354-443 172-253 (373)
115 1wzn_A SAM-dependent methyltra 95.8 0.023 7.9E-07 52.5 7.9 71 354-437 41-111 (252)
116 1qam_A ERMC' methyltransferase 95.8 0.015 5.2E-07 55.2 6.8 75 354-441 30-104 (244)
117 3g5l_A Putative S-adenosylmeth 95.7 0.015 5E-07 54.0 6.3 73 354-439 44-116 (253)
118 1o9g_A RRNA methyltransferase; 95.7 0.0057 2E-07 57.3 3.6 45 354-399 51-97 (250)
119 3dou_A Ribosomal RNA large sub 95.7 0.017 5.8E-07 52.9 6.5 77 352-442 23-102 (191)
120 3ou2_A SAM-dependent methyltra 95.7 0.019 6.6E-07 51.3 6.8 81 341-438 34-114 (218)
121 4dcm_A Ribosomal RNA large sub 95.7 0.016 5.5E-07 59.0 7.0 78 355-442 223-303 (375)
122 1m6y_A S-adenosyl-methyltransf 95.7 0.032 1.1E-06 55.5 8.9 85 354-443 26-110 (301)
123 3ggd_A SAM-dependent methyltra 95.6 0.031 1.1E-06 51.5 8.1 86 350-444 52-137 (245)
124 3kkz_A Uncharacterized protein 95.6 0.027 9.2E-07 52.9 7.7 83 352-444 44-127 (267)
125 1jsx_A Glucose-inhibited divis 95.6 0.023 7.9E-07 50.9 6.9 71 355-437 66-138 (207)
126 1vg5_A RSGI RUH-014, rhomboid 95.6 0.013 4.5E-07 47.6 4.7 39 2-42 31-69 (73)
127 1dl5_A Protein-L-isoaspartate 95.6 0.026 8.7E-07 55.4 7.7 84 354-445 75-158 (317)
128 3s1s_A Restriction endonucleas 95.5 0.015 5E-07 65.9 6.4 104 332-442 294-410 (878)
129 3dh0_A SAM dependent methyltra 95.5 0.022 7.6E-07 51.4 6.6 79 353-439 36-114 (219)
130 4htf_A S-adenosylmethionine-de 95.5 0.019 6.5E-07 54.4 6.4 79 352-440 66-145 (285)
131 2fca_A TRNA (guanine-N(7)-)-me 95.5 0.045 1.5E-06 50.5 8.7 80 354-442 38-119 (213)
132 1o54_A SAM-dependent O-methylt 95.5 0.027 9.3E-07 53.6 7.4 79 354-442 112-192 (277)
133 1wji_A Tudor domain containing 95.5 0.012 4E-07 46.4 3.9 41 2-44 11-51 (63)
134 2dak_A Ubiquitin carboxyl-term 95.5 0.011 3.6E-07 46.3 3.7 38 2-41 11-48 (63)
135 2okc_A Type I restriction enzy 95.4 0.032 1.1E-06 57.6 8.2 83 354-445 171-267 (445)
136 1yb2_A Hypothetical protein TA 95.4 0.034 1.2E-06 53.0 7.8 76 353-440 109-188 (275)
137 3bgv_A MRNA CAP guanine-N7 met 95.4 0.02 6.9E-07 55.4 6.3 94 342-439 22-122 (313)
138 3f4k_A Putative methyltransfer 95.4 0.047 1.6E-06 50.4 8.5 80 353-442 45-125 (257)
139 3lcc_A Putative methyl chlorid 95.4 0.023 7.8E-07 52.2 6.3 75 356-442 68-143 (235)
140 2yvl_A TRMI protein, hypotheti 95.4 0.04 1.4E-06 50.6 8.0 76 354-440 91-167 (248)
141 2zig_A TTHA0409, putative modi 95.4 0.017 5.8E-07 56.5 5.7 45 354-401 235-279 (297)
142 1pjz_A Thiopurine S-methyltran 95.4 0.034 1.2E-06 50.7 7.4 75 353-437 21-107 (203)
143 1wgn_A UBAP1, ubiquitin associ 95.3 0.011 3.7E-07 46.9 3.3 37 3-41 22-58 (63)
144 3duw_A OMT, O-methyltransferas 95.3 0.039 1.3E-06 50.2 7.7 84 354-444 58-146 (223)
145 3mgg_A Methyltransferase; NYSG 95.3 0.044 1.5E-06 51.4 8.1 82 352-442 35-116 (276)
146 1xxl_A YCGJ protein; structura 95.3 0.036 1.2E-06 51.4 7.3 78 353-441 20-97 (239)
147 2pwy_A TRNA (adenine-N(1)-)-me 95.3 0.045 1.5E-06 50.6 8.0 81 353-442 95-177 (258)
148 4azs_A Methyltransferase WBDD; 95.3 0.0081 2.8E-07 64.1 3.3 77 353-438 65-141 (569)
149 3vc1_A Geranyl diphosphate 2-C 95.3 0.038 1.3E-06 53.5 7.7 84 343-438 107-192 (312)
150 2r6z_A UPF0341 protein in RSP 95.3 0.015 5.3E-07 56.2 5.0 81 354-441 83-171 (258)
151 3dtn_A Putative methyltransfer 95.3 0.03 1E-06 51.2 6.6 78 353-444 43-122 (234)
152 2oyr_A UPF0341 protein YHIQ; a 95.2 0.017 5.7E-07 56.5 5.1 76 356-442 90-175 (258)
153 3h2b_A SAM-dependent methyltra 95.2 0.033 1.1E-06 49.8 6.4 69 355-439 42-110 (203)
154 2yqz_A Hypothetical protein TT 95.2 0.044 1.5E-06 50.5 7.5 77 352-440 37-113 (263)
155 1veg_A NEDD8 ultimate buster-1 95.2 0.015 5.2E-07 48.4 3.8 38 2-41 31-68 (83)
156 3ofk_A Nodulation protein S; N 95.1 0.021 7.3E-07 51.5 5.2 72 354-439 51-122 (216)
157 2gb4_A Thiopurine S-methyltran 95.1 0.035 1.2E-06 53.2 6.9 74 354-437 68-158 (252)
158 2p7i_A Hypothetical protein; p 95.1 0.03 1E-06 50.7 6.0 79 343-438 32-110 (250)
159 1vl5_A Unknown conserved prote 95.1 0.049 1.7E-06 50.8 7.5 93 337-442 22-114 (260)
160 3kr9_A SAM-dependent methyltra 95.0 0.057 1.9E-06 51.8 8.0 65 349-414 10-75 (225)
161 1mjf_A Spermidine synthase; sp 95.0 0.023 7.7E-07 55.2 5.3 78 353-441 74-162 (281)
162 3hm2_A Precorrin-6Y C5,15-meth 95.0 0.047 1.6E-06 47.3 6.8 82 354-443 25-106 (178)
163 1xdz_A Methyltransferase GIDB; 95.0 0.025 8.6E-07 52.7 5.3 79 353-439 69-149 (240)
164 3jwh_A HEN1; methyltransferase 94.9 0.075 2.6E-06 48.1 8.3 78 354-440 29-111 (217)
165 3jwg_A HEN1, methyltransferase 94.9 0.064 2.2E-06 48.5 7.8 46 354-400 29-74 (219)
166 3g89_A Ribosomal RNA small sub 94.9 0.031 1.1E-06 53.3 6.0 79 353-437 79-157 (249)
167 1wiv_A UBP14, ubiquitin-specif 94.9 0.025 8.7E-07 45.7 4.5 38 2-41 31-68 (73)
168 3bzb_A Uncharacterized protein 94.9 0.083 2.8E-06 50.9 9.0 44 354-399 79-123 (281)
169 3d2l_A SAM-dependent methyltra 94.9 0.036 1.2E-06 50.5 6.1 74 351-438 30-103 (243)
170 2ex4_A Adrenal gland protein A 94.9 0.025 8.5E-07 52.3 5.0 76 354-439 79-154 (241)
171 1z96_A DNA-damage, UBA-domain 94.9 0.024 8.3E-07 39.7 3.8 26 2-27 6-31 (40)
172 3r0q_C Probable protein argini 94.8 0.05 1.7E-06 55.0 7.4 74 354-439 63-137 (376)
173 3dxy_A TRNA (guanine-N(7)-)-me 94.8 0.034 1.2E-06 51.9 5.7 84 354-443 34-117 (218)
174 3g2m_A PCZA361.24; SAM-depende 94.8 0.043 1.5E-06 52.6 6.5 71 355-437 83-156 (299)
175 3m33_A Uncharacterized protein 94.8 0.055 1.9E-06 49.8 7.0 72 353-439 47-119 (226)
176 3ntv_A MW1564 protein; rossman 94.8 0.054 1.8E-06 50.4 7.0 84 354-444 71-155 (232)
177 3iv6_A Putative Zn-dependent a 94.7 0.039 1.3E-06 53.9 6.1 77 353-444 44-123 (261)
178 3tr6_A O-methyltransferase; ce 94.7 0.079 2.7E-06 48.1 7.8 81 354-441 64-150 (225)
179 3hem_A Cyclopropane-fatty-acyl 94.7 0.079 2.7E-06 50.8 8.2 73 353-439 71-145 (302)
180 3hnr_A Probable methyltransfer 94.7 0.068 2.3E-06 48.1 7.3 73 354-442 45-117 (220)
181 2yxe_A Protein-L-isoaspartate 94.7 0.072 2.5E-06 48.1 7.4 84 353-444 76-159 (215)
182 1ri5_A MRNA capping enzyme; me 94.6 0.043 1.5E-06 51.6 5.9 79 352-439 62-141 (298)
183 2ar0_A M.ecoki, type I restric 94.6 0.038 1.3E-06 59.1 6.1 106 331-445 147-275 (541)
184 3bxo_A N,N-dimethyltransferase 94.6 0.032 1.1E-06 50.7 4.8 74 347-437 33-106 (239)
185 1r18_A Protein-L-isoaspartate( 94.6 0.045 1.5E-06 50.3 5.8 92 344-444 74-176 (227)
186 3q7e_A Protein arginine N-meth 94.6 0.052 1.8E-06 54.2 6.7 76 354-440 66-142 (349)
187 1i9g_A Hypothetical protein RV 94.5 0.074 2.5E-06 50.1 7.4 78 354-440 99-180 (280)
188 1fbn_A MJ fibrillarin homologu 94.5 0.084 2.9E-06 48.8 7.6 77 353-438 73-150 (230)
189 3lec_A NADB-rossmann superfami 94.5 0.084 2.9E-06 50.9 7.8 52 350-402 17-68 (230)
190 1g8a_A Fibrillarin-like PRE-rR 94.5 0.11 3.8E-06 47.4 8.3 80 353-440 72-152 (227)
191 1whc_A RSGI RUH-027, UBA/UBX 3 94.5 0.032 1.1E-06 43.9 3.9 39 2-41 11-49 (64)
192 3gnl_A Uncharacterized protein 94.4 0.068 2.3E-06 52.1 7.0 53 349-402 16-68 (244)
193 3ujc_A Phosphoethanolamine N-m 94.4 0.065 2.2E-06 49.4 6.5 75 353-440 54-129 (266)
194 1jg1_A PIMT;, protein-L-isoasp 94.4 0.1 3.4E-06 48.3 7.8 81 354-444 91-171 (235)
195 1inl_A Spermidine synthase; be 94.4 0.049 1.7E-06 53.3 5.9 81 353-442 89-174 (296)
196 3bkw_A MLL3908 protein, S-aden 94.3 0.098 3.4E-06 47.6 7.5 74 354-440 43-116 (243)
197 3adn_A Spermidine synthase; am 94.3 0.064 2.2E-06 52.9 6.5 81 353-441 82-167 (294)
198 3v97_A Ribosomal RNA large sub 94.2 0.052 1.8E-06 59.9 6.4 82 354-441 190-313 (703)
199 2gpy_A O-methyltransferase; st 94.2 0.068 2.3E-06 49.2 6.3 83 354-444 54-139 (233)
200 3lkd_A Type I restriction-modi 94.2 0.042 1.4E-06 59.0 5.5 83 354-442 221-308 (542)
201 1zx0_A Guanidinoacetate N-meth 94.2 0.054 1.9E-06 50.0 5.6 75 354-437 60-134 (236)
202 2pjd_A Ribosomal RNA small sub 94.2 0.091 3.1E-06 52.1 7.6 76 355-442 197-272 (343)
203 2cpw_A CBL-interacting protein 94.2 0.048 1.6E-06 42.9 4.4 39 2-41 21-59 (64)
204 2avn_A Ubiquinone/menaquinone 94.1 0.069 2.4E-06 50.1 6.2 72 352-440 52-123 (260)
205 3u81_A Catechol O-methyltransf 94.1 0.063 2.2E-06 49.2 5.7 84 354-444 58-147 (221)
206 2avd_A Catechol-O-methyltransf 94.1 0.14 4.7E-06 46.7 7.9 85 354-442 69-156 (229)
207 2gs9_A Hypothetical protein TT 94.1 0.088 3E-06 47.2 6.5 75 348-440 30-104 (211)
208 2crn_A Ubash3A protein; compac 94.0 0.046 1.6E-06 43.1 4.0 39 2-41 11-49 (64)
209 1dv0_A DNA repair protein HHR2 94.0 0.027 9.3E-07 41.8 2.5 37 2-40 6-42 (47)
210 1iy9_A Spermidine synthase; ro 94.0 0.074 2.5E-06 51.5 6.2 80 353-441 74-158 (275)
211 1nkv_A Hypothetical protein YJ 93.9 0.14 4.7E-06 47.2 7.7 73 353-437 35-109 (256)
212 2qfm_A Spermine synthase; sper 93.9 0.079 2.7E-06 54.6 6.6 83 353-441 187-277 (364)
213 3uzu_A Ribosomal RNA small sub 93.9 0.06 2.1E-06 52.9 5.5 102 330-440 18-123 (279)
214 2y1w_A Histone-arginine methyl 93.9 0.11 3.7E-06 51.8 7.4 75 354-440 50-125 (348)
215 2knz_A Ubiquilin-4; cytoplasm, 93.9 0.057 2E-06 40.9 4.1 38 2-41 13-51 (53)
216 1xtp_A LMAJ004091AAA; SGPP, st 93.9 0.06 2E-06 49.5 5.2 74 354-439 93-166 (254)
217 3dlc_A Putative S-adenosyl-L-m 93.9 0.14 4.9E-06 45.4 7.5 75 357-442 46-122 (219)
218 2dag_A Ubiquitin carboxyl-term 93.8 0.048 1.6E-06 44.1 3.9 39 2-41 11-49 (74)
219 1ej0_A FTSJ; methyltransferase 93.8 0.059 2E-06 45.7 4.6 80 353-445 21-102 (180)
220 3ftd_A Dimethyladenosine trans 93.8 0.046 1.6E-06 52.5 4.4 76 354-442 31-106 (249)
221 2p8j_A S-adenosylmethionine-de 93.8 0.18 6.3E-06 44.8 8.0 75 353-439 22-97 (209)
222 2fk8_A Methoxy mycolic acid sy 93.7 0.16 5.4E-06 49.0 8.0 73 353-439 89-163 (318)
223 2ipx_A RRNA 2'-O-methyltransfe 93.7 0.11 3.9E-06 47.7 6.7 80 353-440 76-156 (233)
224 3e8s_A Putative SAM dependent 93.7 0.14 4.6E-06 45.8 7.0 76 354-442 52-127 (227)
225 4gek_A TRNA (CMO5U34)-methyltr 93.7 0.12 4.1E-06 49.7 7.1 75 352-439 68-147 (261)
226 3cc8_A Putative methyltransfer 93.7 0.12 4.2E-06 46.2 6.7 72 353-440 31-102 (230)
227 2fyt_A Protein arginine N-meth 93.6 0.13 4.4E-06 51.3 7.3 75 354-439 64-139 (340)
228 2p35_A Trans-aconitate 2-methy 93.5 0.17 5.8E-06 46.6 7.6 74 353-443 32-107 (259)
229 1g60_A Adenine-specific methyl 93.5 0.068 2.3E-06 51.2 5.0 44 353-399 211-254 (260)
230 3tfw_A Putative O-methyltransf 93.5 0.15 5.2E-06 48.0 7.4 82 354-443 63-148 (248)
231 1kpg_A CFA synthase;, cyclopro 93.5 0.2 6.7E-06 47.4 8.1 73 353-439 63-137 (287)
232 2dai_A Ubadc1, ubiquitin assoc 93.5 0.062 2.1E-06 44.5 4.0 38 2-41 31-68 (83)
233 3ocj_A Putative exported prote 93.5 0.049 1.7E-06 52.5 4.0 79 351-438 115-194 (305)
234 3g07_A 7SK snRNA methylphospha 93.4 0.17 5.9E-06 48.7 7.7 52 344-398 36-89 (292)
235 3g5t_A Trans-aconitate 3-methy 93.4 0.19 6.5E-06 48.0 7.9 83 353-440 35-122 (299)
236 3gu3_A Methyltransferase; alph 93.3 0.11 3.7E-06 49.6 6.1 75 353-440 21-98 (284)
237 3dli_A Methyltransferase; PSI- 93.3 0.068 2.3E-06 49.3 4.5 44 350-396 37-80 (240)
238 3khk_A Type I restriction-modi 93.3 0.074 2.5E-06 57.1 5.3 80 356-442 246-340 (544)
239 3dr5_A Putative O-methyltransf 93.3 0.082 2.8E-06 49.4 5.0 82 355-443 57-141 (221)
240 1g6q_1 HnRNP arginine N-methyl 93.1 0.18 6.1E-06 49.8 7.4 76 354-440 38-114 (328)
241 4ae4_A Ubiquitin-associated pr 93.0 0.077 2.6E-06 46.6 4.1 36 4-41 12-47 (118)
242 4hg2_A Methyltransferase type 92.9 0.054 1.9E-06 52.2 3.2 76 346-438 31-106 (257)
243 2b25_A Hypothetical protein; s 92.8 0.13 4.6E-06 50.3 6.1 82 354-442 105-198 (336)
244 2jy5_A Ubiquilin-1; UBA, alter 92.8 0.11 3.6E-06 39.3 4.1 36 2-39 14-50 (52)
245 3b3j_A Histone-arginine methyl 92.8 0.16 5.3E-06 53.6 6.8 75 354-440 158-233 (480)
246 3thr_A Glycine N-methyltransfe 92.6 0.17 5.6E-06 47.9 6.2 76 354-437 57-136 (293)
247 1yub_A Ermam, rRNA methyltrans 92.5 0.013 4.4E-07 55.3 -1.7 77 354-443 29-105 (245)
248 4hc4_A Protein arginine N-meth 92.4 0.19 6.4E-06 51.7 6.7 71 355-437 84-155 (376)
249 2dkl_A Trinucleotide repeat co 92.4 0.13 4.4E-06 42.8 4.4 42 2-45 23-64 (85)
250 2hnk_A SAM-dependent O-methylt 92.4 0.26 8.9E-06 45.6 7.1 62 354-415 60-122 (239)
251 2o07_A Spermidine synthase; st 92.4 0.11 3.9E-06 51.1 4.9 81 353-441 94-178 (304)
252 3ckk_A TRNA (guanine-N(7)-)-me 92.3 0.2 6.8E-06 47.3 6.2 86 353-444 45-136 (235)
253 3ccf_A Cyclopropane-fatty-acyl 92.2 0.31 1.1E-05 46.0 7.5 70 354-440 57-126 (279)
254 2o57_A Putative sarcosine dime 92.2 0.3 1E-05 46.2 7.5 76 353-439 81-158 (297)
255 4fzv_A Putative methyltransfer 92.1 0.27 9.2E-06 50.2 7.4 88 354-444 148-236 (359)
256 2i7c_A Spermidine synthase; tr 92.1 0.17 5.7E-06 49.1 5.6 81 353-441 77-161 (283)
257 3bus_A REBM, methyltransferase 92.1 0.49 1.7E-05 44.0 8.5 79 354-443 61-141 (273)
258 1p91_A Ribosomal RNA large sub 91.8 0.24 8.2E-06 46.3 6.2 71 353-439 84-156 (269)
259 1uir_A Polyamine aminopropyltr 91.6 0.19 6.4E-06 49.6 5.4 81 353-441 76-161 (314)
260 2nyu_A Putative ribosomal RNA 91.6 0.25 8.6E-06 43.6 5.7 77 353-441 21-107 (196)
261 3bwc_A Spermidine synthase; SA 91.6 0.19 6.6E-06 49.2 5.4 82 353-441 94-179 (304)
262 2pt6_A Spermidine synthase; tr 91.3 0.21 7E-06 49.7 5.4 80 353-440 115-198 (321)
263 3c3y_A Pfomt, O-methyltransfer 91.3 0.41 1.4E-05 44.8 7.2 83 354-443 70-159 (237)
264 2plw_A Ribosomal RNA methyltra 91.3 0.34 1.2E-05 42.9 6.4 55 353-418 21-76 (201)
265 1qyr_A KSGA, high level kasuga 91.1 0.3 1E-05 47.0 6.1 81 354-442 21-101 (252)
266 3i9f_A Putative type 11 methyl 91.1 0.52 1.8E-05 40.6 7.1 69 353-440 16-84 (170)
267 1sui_A Caffeoyl-COA O-methyltr 90.8 0.26 8.8E-06 46.7 5.3 83 354-443 79-168 (247)
268 2bwb_A Ubiquitin-like protein 90.7 0.22 7.6E-06 36.7 3.7 36 2-39 9-45 (46)
269 2a14_A Indolethylamine N-methy 90.7 0.19 6.6E-06 47.5 4.3 44 354-399 55-98 (263)
270 2vdw_A Vaccinia virus capping 90.6 0.75 2.6E-05 45.1 8.5 47 353-401 47-93 (302)
271 2i62_A Nicotinamide N-methyltr 90.5 0.21 7.2E-06 46.0 4.3 45 354-400 56-100 (265)
272 3cbg_A O-methyltransferase; cy 90.3 0.65 2.2E-05 43.1 7.5 81 354-441 72-158 (232)
273 3c3p_A Methyltransferase; NP_9 90.3 0.44 1.5E-05 43.0 6.1 79 354-443 56-138 (210)
274 2b2c_A Spermidine synthase; be 90.2 0.31 1.1E-05 48.5 5.4 80 353-440 107-190 (314)
275 2dah_A Ubiquilin-3; UBA domain 90.2 0.28 9.4E-06 37.4 3.9 38 2-41 11-49 (54)
276 3mq2_A 16S rRNA methyltransfer 90.1 0.22 7.6E-06 45.0 4.0 64 354-418 27-94 (218)
277 2oo3_A Protein involved in cat 89.9 0.14 5E-06 51.0 2.8 90 341-441 80-169 (283)
278 3uwp_A Histone-lysine N-methyl 89.9 0.62 2.1E-05 49.2 7.6 81 353-441 172-262 (438)
279 1xj5_A Spermidine synthase 1; 89.9 0.25 8.6E-06 49.6 4.5 81 353-440 119-203 (334)
280 1vlm_A SAM-dependent methyltra 89.5 0.31 1.1E-05 44.2 4.5 70 347-439 41-110 (219)
281 3ege_A Putative methyltransfer 89.4 0.26 9E-06 46.2 4.1 72 353-441 33-104 (261)
282 1vek_A UBP14, ubiquitin-specif 89.4 0.31 1.1E-05 40.3 4.0 39 2-41 31-69 (84)
283 1wj7_A Hypothetical protein (R 89.4 0.3 1E-05 42.3 3.9 38 2-41 41-79 (104)
284 3fpf_A Mtnas, putative unchara 89.3 0.8 2.8E-05 45.8 7.7 72 353-437 121-194 (298)
285 3fzg_A 16S rRNA methylase; met 89.3 0.34 1.2E-05 46.2 4.7 49 353-402 48-96 (200)
286 3gjy_A Spermidine synthase; AP 89.1 0.3 1E-05 49.2 4.4 77 354-439 89-167 (317)
287 2ooa_A E3 ubiquitin-protein li 89.0 0.24 8.2E-06 37.9 2.7 29 2-30 13-41 (52)
288 3r3h_A O-methyltransferase, SA 88.8 0.21 7.2E-06 47.2 2.9 83 354-443 60-148 (242)
289 2lbc_A Ubiquitin carboxyl-term 88.4 0.36 1.2E-05 42.1 4.0 39 2-41 5-43 (126)
290 2cmg_A Spermidine synthase; tr 88.1 0.32 1.1E-05 46.9 3.8 73 353-439 71-147 (262)
291 4df3_A Fibrillarin-like rRNA/T 87.8 1.4 4.9E-05 42.3 8.1 82 352-441 75-157 (233)
292 1wr1_B Ubiquitin-like protein 87.8 0.43 1.5E-05 37.0 3.5 37 2-40 19-56 (58)
293 3htx_A HEN1; HEN1, small RNA m 87.7 0.66 2.3E-05 53.0 6.4 65 354-418 721-791 (950)
294 3orh_A Guanidinoacetate N-meth 87.5 0.59 2E-05 43.6 5.1 76 353-437 59-134 (236)
295 4fsd_A Arsenic methyltransfera 87.2 0.58 2E-05 47.0 5.1 80 354-439 83-174 (383)
296 3ufb_A Type I restriction-modi 87.1 0.62 2.1E-05 49.6 5.6 84 354-441 217-312 (530)
297 2lbc_A Ubiquitin carboxyl-term 87.1 0.48 1.6E-05 41.3 3.9 37 3-41 81-117 (126)
298 3id6_C Fibrillarin-like rRNA/T 87.1 1 3.4E-05 43.1 6.5 80 353-440 75-155 (232)
299 2d9s_A CBL E3 ubiquitin protei 85.1 0.48 1.6E-05 36.4 2.4 27 2-28 11-37 (53)
300 2zfu_A Nucleomethylin, cerebra 85.1 0.91 3.1E-05 40.7 4.8 74 336-439 50-123 (215)
301 2r3s_A Uncharacterized protein 84.6 1.6 5.6E-05 41.9 6.7 79 353-444 164-245 (335)
302 1u2z_A Histone-lysine N-methyl 84.5 2.6 9E-05 44.0 8.6 41 353-395 241-282 (433)
303 1nt2_A Fibrillarin-like PRE-rR 84.1 1.8 6.1E-05 39.9 6.4 78 353-438 56-133 (210)
304 3bkx_A SAM-dependent methyltra 83.8 1.3 4.3E-05 41.2 5.3 83 353-442 42-133 (275)
305 2oxt_A Nucleoside-2'-O-methylt 83.5 0.47 1.6E-05 45.9 2.3 35 352-390 72-106 (265)
306 1boo_A Protein (N-4 cytosine-s 83.4 1 3.4E-05 44.7 4.7 44 353-399 251-294 (323)
307 1vej_A Riken cDNA 4931431F19; 83.2 1.3 4.6E-05 35.9 4.5 38 2-41 31-69 (74)
308 1qzz_A RDMB, aclacinomycin-10- 82.9 4.3 0.00015 39.7 9.1 81 352-444 180-261 (374)
309 3hp7_A Hemolysin, putative; st 82.7 0.75 2.6E-05 45.7 3.5 38 353-392 84-121 (291)
310 2juj_A E3 ubiquitin-protein li 82.2 1 3.5E-05 34.8 3.3 29 2-30 9-37 (56)
311 2wa2_A Non-structural protein 81.7 0.35 1.2E-05 47.2 0.6 35 352-390 80-114 (276)
312 4ae4_A Ubiquitin-associated pr 81.0 1.4 4.7E-05 38.6 4.1 36 3-40 79-114 (118)
313 1tw3_A COMT, carminomycin 4-O- 80.2 4.8 0.00017 39.3 8.3 78 353-442 182-260 (360)
314 1x19_A CRTF-related protein; m 80.1 4.3 0.00015 39.8 7.9 72 342-417 180-252 (359)
315 2dna_A Unnamed protein product 80.0 1.5 5E-05 35.1 3.6 37 3-41 22-59 (67)
316 1ixs_A Holliday junction DNA h 80.0 1.7 5.8E-05 33.9 3.9 33 4-36 21-56 (62)
317 3opn_A Putative hemolysin; str 78.9 1.1 3.9E-05 42.2 3.2 40 353-394 36-75 (232)
318 2cwb_A Chimera of immunoglobul 78.6 1.6 5.5E-05 37.8 3.7 37 2-40 68-105 (108)
319 3p2e_A 16S rRNA methylase; met 78.3 1.8 6E-05 40.4 4.2 64 354-418 24-91 (225)
320 1eg2_A Modification methylase 77.9 1.6 5.6E-05 43.4 4.1 42 353-397 241-285 (319)
321 2cos_A Serine/threonine protei 77.3 1.8 6E-05 33.4 3.1 34 4-38 13-46 (54)
322 2oo9_A E3 ubiquitin-protein li 76.3 2 6.9E-05 32.1 3.1 26 3-28 7-32 (46)
323 1i4w_A Mitochondrial replicati 74.9 4.9 0.00017 40.9 6.7 60 355-418 59-118 (353)
324 3sso_A Methyltransferase; macr 74.6 2.4 8.2E-05 44.5 4.4 33 9-41 38-70 (419)
325 4e2x_A TCAB9; kijanose, tetron 74.4 5.1 0.00017 40.1 6.6 41 353-396 106-146 (416)
326 2p41_A Type II methyltransfera 74.3 1 3.6E-05 44.4 1.5 32 352-387 80-111 (305)
327 4auk_A Ribosomal RNA large sub 69.1 4.9 0.00017 41.6 5.2 73 352-442 209-281 (375)
328 2xyq_A Putative 2'-O-methyl tr 67.4 5.1 0.00017 39.6 4.7 65 352-440 61-132 (290)
329 4gqb_A Protein arginine N-meth 65.9 6.9 0.00024 43.0 5.8 70 355-436 358-433 (637)
330 1wg8_A Predicted S-adenosylmet 65.3 15 0.00051 36.6 7.6 75 355-441 23-99 (285)
331 1oqy_A HHR23A, UV excision rep 64.0 3.7 0.00013 42.2 3.1 36 3-40 171-206 (368)
332 4fs3_A Enoyl-[acyl-carrier-pro 61.2 13 0.00045 34.9 6.2 66 368-438 24-93 (256)
333 2dpm_A M.dpnii 1, protein (ade 61.1 5.2 0.00018 39.3 3.5 47 346-397 26-73 (284)
334 3frh_A 16S rRNA methylase; met 59.5 11 0.00037 37.1 5.3 44 353-400 104-147 (253)
335 2g1p_A DNA adenine methylase; 59.5 4.5 0.00015 39.5 2.6 48 345-397 18-65 (278)
336 3ua3_A Protein arginine N-meth 57.9 4.7 0.00016 45.2 2.7 80 355-439 410-503 (745)
337 3lcv_B Sisomicin-gentamicin re 57.1 8.7 0.0003 38.4 4.2 48 353-401 131-178 (281)
338 3cvo_A Methyltransferase-like 55.6 33 0.0011 32.1 7.8 59 354-417 30-92 (202)
339 3mcz_A O-methyltransferase; ad 54.4 20 0.0007 34.6 6.4 82 354-444 179-261 (352)
340 2w84_A Peroxisomal membrane pr 53.6 10 0.00036 30.5 3.4 28 2-29 37-64 (70)
341 1yf3_A DNA adenine methylase; 53.2 4.4 0.00015 39.1 1.4 47 345-397 15-61 (259)
342 3ged_A Short-chain dehydrogena 52.7 13 0.00045 35.6 4.6 60 369-438 19-82 (247)
343 2kna_A Baculoviral IAP repeat- 51.3 14 0.00048 31.4 4.0 39 4-42 31-74 (104)
344 4fn4_A Short chain dehydrogena 50.1 19 0.00066 34.6 5.3 63 369-437 24-90 (254)
345 2ip2_A Probable phenazine-spec 48.7 17 0.00059 34.9 4.8 77 356-444 169-246 (334)
346 2g72_A Phenylethanolamine N-me 47.0 10 0.00035 35.7 2.8 43 354-399 71-114 (289)
347 2k4m_A TR8_protein, UPF0146 pr 46.4 14 0.00049 33.8 3.5 41 349-392 30-72 (153)
348 2cp8_A NEXT to BRCA1 gene 1 pr 45.7 9.4 0.00032 29.3 1.9 25 3-27 12-37 (54)
349 2bm8_A Cephalosporin hydroxyla 44.3 14 0.00047 34.5 3.2 73 355-437 82-158 (236)
350 3gwz_A MMCR; methyltransferase 42.5 52 0.0018 32.4 7.3 82 352-445 200-282 (369)
351 1xu9_A Corticosteroid 11-beta- 42.0 77 0.0026 29.6 8.1 97 334-436 3-111 (286)
352 4b79_A PA4098, probable short- 40.7 19 0.00065 34.5 3.7 57 369-437 28-84 (242)
353 4g81_D Putative hexonate dehyd 40.2 33 0.0011 33.0 5.2 64 369-438 26-93 (255)
354 2aot_A HMT, histamine N-methyl 39.8 61 0.0021 30.5 7.0 46 354-399 52-102 (292)
355 3c6k_A Spermine synthase; sper 39.5 57 0.0019 33.7 7.1 81 356-442 207-295 (381)
356 3oig_A Enoyl-[acyl-carrier-pro 37.5 57 0.002 30.0 6.3 67 368-439 25-95 (266)
357 3ff5_A PEX14P, peroxisomal bio 36.6 22 0.00075 27.3 2.6 23 2-24 32-54 (54)
358 3f1l_A Uncharacterized oxidore 34.4 61 0.0021 29.8 6.0 74 362-438 18-99 (252)
359 3dp7_A SAM-dependent methyltra 34.4 1E+02 0.0034 30.2 7.9 82 354-445 179-262 (363)
360 4fgs_A Probable dehydrogenase 33.9 48 0.0016 32.2 5.3 62 369-437 46-109 (273)
361 3i1j_A Oxidoreductase, short c 33.1 85 0.0029 28.3 6.6 76 361-439 19-102 (247)
362 3o38_A Short chain dehydrogena 32.2 73 0.0025 29.3 6.1 64 371-439 42-109 (266)
363 3pk0_A Short-chain dehydrogena 30.5 63 0.0021 30.0 5.4 75 362-439 16-96 (262)
364 3ek2_A Enoyl-(acyl-carrier-pro 30.0 86 0.003 28.6 6.1 65 370-439 34-100 (271)
365 3i53_A O-methyltransferase; CO 29.2 1.3E+02 0.0044 28.8 7.5 47 353-401 168-214 (332)
366 3nrc_A Enoyl-[acyl-carrier-pro 28.5 82 0.0028 29.4 5.8 64 368-439 44-111 (280)
367 3llv_A Exopolyphosphatase-rela 28.3 1.4E+02 0.0047 24.6 6.6 66 361-440 10-79 (141)
368 4egf_A L-xylulose reductase; s 28.3 73 0.0025 29.6 5.4 67 370-439 38-106 (266)
369 3ucx_A Short chain dehydrogena 27.8 1E+02 0.0035 28.5 6.3 67 369-439 28-96 (264)
370 2qe6_A Uncharacterized protein 27.6 81 0.0028 29.9 5.6 81 356-442 79-168 (274)
371 3o4f_A Spermidine synthase; am 27.2 1.3E+02 0.0045 29.8 7.2 79 353-440 82-166 (294)
372 2px2_A Genome polyprotein [con 26.9 22 0.00074 35.3 1.5 24 351-374 70-93 (269)
373 3rih_A Short chain dehydrogena 26.5 59 0.002 31.1 4.5 75 362-439 47-127 (293)
374 3t4x_A Oxidoreductase, short c 26.2 93 0.0032 28.8 5.7 65 370-439 28-93 (267)
375 3lf2_A Short chain oxidoreduct 26.2 86 0.0029 29.0 5.5 65 370-439 26-95 (265)
376 3k31_A Enoyl-(acyl-carrier-pro 26.0 97 0.0033 29.4 5.9 65 368-439 48-116 (296)
377 3pdi_A Nitrogenase MOFE cofact 25.6 57 0.002 34.2 4.5 128 303-442 265-412 (483)
378 3o26_A Salutaridine reductase; 25.2 1E+02 0.0034 28.5 5.7 75 361-439 17-99 (311)
379 1q02_A Sequestosome 1; helical 24.9 33 0.0011 26.2 1.8 33 4-38 14-48 (52)
380 4dbg_B Ring finger protein 31; 24.7 60 0.0021 30.0 3.9 35 5-39 15-63 (162)
381 3gaf_A 7-alpha-hydroxysteroid 24.2 87 0.003 28.9 5.1 66 370-439 30-97 (256)
382 1af7_A Chemotaxis receptor met 24.1 63 0.0022 31.2 4.2 43 354-397 105-155 (274)
383 3v2h_A D-beta-hydroxybutyrate 24.1 96 0.0033 29.2 5.4 65 370-439 43-112 (281)
384 3gvc_A Oxidoreductase, probabl 23.4 1.2E+02 0.0041 28.6 5.9 63 369-438 46-110 (277)
385 3ftp_A 3-oxoacyl-[acyl-carrier 23.1 99 0.0034 28.9 5.3 66 370-439 46-113 (270)
386 1e7w_A Pteridine reductase; di 22.9 1.3E+02 0.0044 28.4 6.1 67 370-439 27-113 (291)
387 1qgu_B Protein (nitrogenase mo 22.9 1.7E+02 0.0059 30.8 7.6 130 304-441 298-444 (519)
388 4fc7_A Peroxisomal 2,4-dienoyl 22.3 71 0.0024 29.9 4.1 75 361-439 32-113 (277)
389 3nyw_A Putative oxidoreductase 22.2 1.1E+02 0.0036 28.3 5.2 67 370-439 25-95 (250)
390 4dry_A 3-oxoacyl-[acyl-carrier 21.9 80 0.0027 29.8 4.4 76 361-439 38-119 (281)
391 3gcz_A Polyprotein; flavivirus 21.4 52 0.0018 32.8 3.0 36 353-390 89-125 (282)
392 3sju_A Keto reductase; short-c 21.1 1.2E+02 0.004 28.5 5.4 75 361-439 29-109 (279)
393 3imf_A Short chain dehydrogena 20.9 1.1E+02 0.0038 28.2 5.0 64 370-439 24-91 (257)
394 3r1i_A Short-chain type dehydr 20.6 1E+02 0.0035 29.0 4.8 73 363-439 39-117 (276)
395 3grk_A Enoyl-(acyl-carrier-pro 20.6 1.4E+02 0.0048 28.3 5.8 64 369-439 50-117 (293)
396 3v8b_A Putative dehydrogenase, 20.5 1.2E+02 0.004 28.6 5.2 73 362-438 34-112 (283)
397 3tfo_A Putative 3-oxoacyl-(acy 20.3 1E+02 0.0035 28.9 4.8 64 370-439 22-89 (264)
398 3tox_A Short chain dehydrogena 20.3 1E+02 0.0034 29.1 4.7 64 370-439 26-93 (280)
399 3edm_A Short chain dehydrogena 20.3 1.1E+02 0.0038 28.2 5.0 65 370-437 26-92 (259)
No 1
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=99.94 E-value=3e-27 Score=233.50 Aligned_cols=105 Identities=17% Similarity=0.342 Sum_probs=92.8
Q ss_pred CcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEE
Q 011347 356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV 435 (488)
Q Consensus 356 itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLV 435 (488)
|+||||||||||+++||++||| ++++++|+|+.|+++|+.+|. ..++.+||++++.+++ +++|||
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~--~~v~a~e~d~~a~~ty~~N~~------~~~~~~DI~~i~~~~~-------~~~D~l 65 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGF--RIICANEYDKSIWKTYESNHS------AKLIKGDISKISSDEF-------PKCDGI 65 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTC--EEEEEEECCTTTHHHHHHHCC------SEEEESCGGGCCGGGS-------CCCSEE
T ss_pred CeEEEeCcCccHHHHHHHHCCC--EEEEEEeCCHHHHHHHHHHCC------CCcccCChhhCCHhhC-------CcccEE
Confidence 6899999999999999999998 468999999999999987652 2367799999998765 579999
Q ss_pred EecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 011347 436 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 487 (488)
Q Consensus 436 IGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~~ 487 (488)
+||||||+||.+|+ +.|++|+|+.||++|+|+|+++||.+
T Consensus 66 ~ggpPCQ~fS~ag~------------~~g~~d~R~~L~~~~~r~i~~~~Pk~ 105 (331)
T 3ubt_Y 66 IGGPPSQSWSEGGS------------LRGIDDPRGKLFYEYIRILKQKKPIF 105 (331)
T ss_dssp ECCCCGGGTEETTE------------ECCTTCGGGHHHHHHHHHHHHHCCSE
T ss_pred EecCCCCCcCCCCC------------ccCCCCchhHHHHHHHHHHhccCCeE
Confidence 99999999998864 35789999999999999999999974
No 2
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=99.93 E-value=7.1e-26 Score=226.07 Aligned_cols=116 Identities=22% Similarity=0.366 Sum_probs=101.4
Q ss_pred cCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccC
Q 011347 351 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 430 (488)
Q Consensus 351 ~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g 430 (488)
..+.+++||||||||||+++||+++||++++|+++|+|+.|+++|+.++ ++..++.+||++++.+++++ ++
T Consensus 12 ~~~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~-----~~~~~~~~DI~~i~~~~i~~----~~ 82 (295)
T 2qrv_A 12 EKRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH-----QGKIMYVGDVRSVTQKHIQE----WG 82 (295)
T ss_dssp CCCCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT-----TTCEEEECCGGGCCHHHHHH----TC
T ss_pred ccCCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC-----CCCceeCCChHHccHHHhcc----cC
Confidence 4567899999999999999999999998877999999999999998754 34446789999999987764 37
Q ss_pred CccEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 011347 431 SIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 486 (488)
Q Consensus 431 ~~DLVIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~ 486 (488)
++|||+||||||+||.+|+ ++.|++|+|+.||++|+|+|+++||.
T Consensus 83 ~~Dll~ggpPCQ~fS~ag~-----------~r~g~~d~r~~L~~~~~rii~~~~P~ 127 (295)
T 2qrv_A 83 PFDLVIGGSPCNDLSIVNP-----------ARKGLYEGTGRLFFEFYRLLHDARPK 127 (295)
T ss_dssp CCSEEEECCCCGGGBTTCT-----------TCCTTTSTTTTHHHHHHHHHHHHSCC
T ss_pred CcCEEEecCCCccccccCc-----------cccccccccchhHHHHHHHHHHhCcc
Confidence 8999999999999999863 23578999999999999999999986
No 3
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=99.90 E-value=1.9e-24 Score=218.37 Aligned_cols=118 Identities=19% Similarity=0.327 Sum_probs=98.1
Q ss_pred cccccCCCCCcccccCCCCChhHHHHHHcCCeeeeE-EEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHh
Q 011347 347 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGV-ISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL 425 (488)
Q Consensus 347 vLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~v-vsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l 425 (488)
+|.++...+++||||||||||+++||+++||+++++ +++|+|+.|+++|+.+|.. . ++.+||++++.++|..
T Consensus 2 ~l~~m~~~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-----~-~~~~DI~~~~~~~i~~- 74 (327)
T 3qv2_A 2 PLGSMQQKQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-----E-VQVKNLDSISIKQIES- 74 (327)
T ss_dssp ------CCCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-----C-CBCCCTTTCCHHHHHH-
T ss_pred CCccccCCCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-----C-cccCChhhcCHHHhcc-
Confidence 355666778999999999999999999999877889 9999999999999987642 2 5679999999988764
Q ss_pred hhccCCccEEEecCCCCCc--cccCCCCCCCCccccccCCCCCCCCcchHHHHHH-HHHHh--hccc
Q 011347 426 IHKLGSIDFVICQNSVPQI--PNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVR-VVQRV--RSMK 487 (488)
Q Consensus 426 ~~~~g~~DLVIGGpPCQ~F--S~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvR-IV~~v--r~~~ 487 (488)
.++|||+||||||+| |.+|+ +.|++|+|+.||++|+| +|+++ ||.+
T Consensus 75 ----~~~Dil~ggpPCQ~fs~S~ag~------------~~~~~d~r~~L~~~~~r~~i~~~~~~P~~ 125 (327)
T 3qv2_A 75 ----LNCNTWFMSPPCQPYNNSIMSK------------HKDINDPRAKSVLHLYRDILPYLINKPKH 125 (327)
T ss_dssp ----TCCCEEEECCCCTTCSHHHHTT------------TCTTTCGGGHHHHHHHHTTGGGCSSCCSE
T ss_pred ----CCCCEEEecCCccCcccccCCC------------CCCCccccchhHHHHHHHHHHHhccCCCE
Confidence 279999999999999 87754 35688999999999999 99998 7763
No 4
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=99.90 E-value=3.1e-24 Score=217.20 Aligned_cols=111 Identities=14% Similarity=0.222 Sum_probs=97.1
Q ss_pred CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347 355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 434 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL 434 (488)
.++||||||||||+++||+++|+..++|+++|+|+.|+++|+.+|. +..+..+||++++.+++.. .++||
T Consensus 3 ~~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----~~~~~~~DI~~~~~~~~~~-----~~~D~ 72 (333)
T 4h0n_A 3 SHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----ETNLLNRNIQQLTPQVIKK-----WNVDT 72 (333)
T ss_dssp CEEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECCCGGGCCHHHHHH-----TTCCE
T ss_pred CCEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----CCceeccccccCCHHHhcc-----CCCCE
Confidence 4789999999999999999999988899999999999999988653 3335679999999988764 37999
Q ss_pred EEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhh-ccc
Q 011347 435 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVR-SMK 487 (488)
Q Consensus 435 VIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr-~~~ 487 (488)
|+||||||+||.+|+ +.|++|+|+.||++|+|+|++++ |.+
T Consensus 73 l~ggpPCQ~fS~ag~------------~~~~~d~r~~L~~~~~r~i~~~~~P~~ 114 (333)
T 4h0n_A 73 ILMSPPCQPFTRNGK------------YLDDNDPRTNSFLYLIGILDQLDNVDY 114 (333)
T ss_dssp EEECCCCCCSEETTE------------ECCTTCTTSCCHHHHHHHGGGCTTCCE
T ss_pred EEecCCCcchhhhhh------------ccCCcCcccccHHHHHHHHHHhcCCCE
Confidence 999999999998864 35688999999999999999997 753
No 5
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=99.90 E-value=2.6e-24 Score=227.89 Aligned_cols=125 Identities=17% Similarity=0.262 Sum_probs=88.6
Q ss_pred CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhh--------H-HHh
Q 011347 355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKK--------F-ESL 425 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~--------I-e~l 425 (488)
.++||||||||||+++||+++|+ ++|+++|+|+.|+++|+.+|.. .++..++.+||++++.+. + +.+
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG~--~~v~avE~d~~A~~ty~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i 163 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIGG--QCVFTSEWNKHAVRTYKANHYC--DPATHHFNEDIRDITLSHQEGVSDEAAAEHI 163 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTTE--EEEEEECCCHHHHHHHHHHSCC--CTTTCEEESCTHHHHCTTCTTSCHHHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHCCC--EEEEEEeCCHHHHHHHHHhccc--CCCcceeccchhhhhhccccccchhhHHhhh
Confidence 58999999999999999999997 5799999999999999987632 234456779999887422 1 112
Q ss_pred hhccCCccEEEecCCCCCccccCCCCCCCCccccccCCCCC-CCCcchHHHHHHHHHHhhccc
Q 011347 426 IHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLP-DFDFSLYYEFVRVVQRVRSMK 487 (488)
Q Consensus 426 ~~~~g~~DLVIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~-D~Rs~LF~EfvRIV~~vr~~~ 487 (488)
....+++|||+||||||+||.+|+.++. -.+.+.|++ |+|+.||++|+|+|+.++|.+
T Consensus 164 ~~~~~~~Dvl~gGpPCQ~FS~AG~~k~~----~~g~~~G~~~D~R~~Lf~e~~riI~~~rPk~ 222 (482)
T 3me5_A 164 RQHIPEHDVLLAGFPCQPFSLAGVSKKN----SLGRAHGFACDTQGTLFFDVVRIIDARRPAM 222 (482)
T ss_dssp HHHSCCCSEEEEECCCCCC----------------------CTTTTSHHHHHHHHHHHHCCSE
T ss_pred hhcCCCCCEEEecCCCcchhhhCccccc----ccccccccccCccccHHHHHHHHHHHcCCcE
Confidence 2345789999999999999999864321 012335665 899999999999999999864
No 6
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=99.89 E-value=6.1e-24 Score=218.11 Aligned_cols=113 Identities=20% Similarity=0.302 Sum_probs=92.1
Q ss_pred CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347 355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 434 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL 434 (488)
.++||||||||||+++||+++|+ +++++||+|+.|+++|+.++. +..++.+||++++.+++.......+++||
T Consensus 2 ~~~vidLFsG~GGlslG~~~aG~--~~v~avE~d~~a~~t~~~N~~-----~~~~~~~DI~~~~~~~~~~~~~~~~~~D~ 74 (376)
T 3g7u_A 2 SLNVIDLFSGVGGLSLGAARAGF--DVKMAVEIDQHAINTHAINFP-----RSLHVQEDVSLLNAEIIKGFFKNDMPIDG 74 (376)
T ss_dssp CCEEEEETCTTSHHHHHHHHHTC--EEEEEECSCHHHHHHHHHHCT-----TSEEECCCGGGCCHHHHHHHHCSCCCCCE
T ss_pred CCeEEEEccCcCHHHHHHHHCCC--cEEEEEeCCHHHHHHHHHhCC-----CCceEecChhhcCHHHHHhhcccCCCeeE
Confidence 48999999999999999999997 468999999999999987653 34467899999998877543223468999
Q ss_pred EEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 011347 435 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 487 (488)
Q Consensus 435 VIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~~ 487 (488)
|+||||||+||.+|+ .+.+|+|+.||++|+|+|+++||.+
T Consensus 75 i~ggpPCQ~fS~ag~-------------~~~~d~r~~L~~~~~~~v~~~~P~~ 114 (376)
T 3g7u_A 75 IIGGPPCQGFSSIGK-------------GNPDDSRNQLYMHFYRLVSELQPLF 114 (376)
T ss_dssp EEECCCCCTTC--------------------CHHHHHHHHHHHHHHHHHCCSE
T ss_pred EEecCCCCCcccccC-------------CCCCCchHHHHHHHHHHHHHhCCCE
Confidence 999999999998864 2578999999999999999999974
No 7
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=99.89 E-value=2.1e-23 Score=210.35 Aligned_cols=106 Identities=19% Similarity=0.319 Sum_probs=92.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+++|||||||+||+++||+++|+ +++++||+|+.|+++|+.+|... . .+||++++.+.+ +++|
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~aG~--~~v~~~e~d~~a~~t~~~N~~~~------~-~~Di~~~~~~~~-------~~~D 73 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESCGA--ECVYSNEWDKYAQEVYEMNFGEK------P-EGDITQVNEKTI-------PDHD 73 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTC--EEEEEECCCHHHHHHHHHHHSCC------C-BSCGGGSCGGGS-------CCCS
T ss_pred CCCcEEEECCCcCHHHHHHHHCCC--eEEEEEeCCHHHHHHHHHHcCCC------C-cCCHHHcCHhhC-------CCCC
Confidence 568999999999999999999997 56999999999999999877432 1 689999987654 4799
Q ss_pred EEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 011347 434 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 487 (488)
Q Consensus 434 LVIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~~ 487 (488)
||+||||||+||.+|+ +.|++|+|+.||++|+|+|+++||.+
T Consensus 74 ~l~~gpPCQ~fS~ag~------------~~g~~d~r~~L~~~~~r~i~~~~P~~ 115 (327)
T 2c7p_A 74 ILCAGFPCQAFSISGK------------QKGFEDSRGTLFFDIARIVREKKPKV 115 (327)
T ss_dssp EEEEECCCTTTCTTSC------------CCGGGSTTSCHHHHHHHHHHHHCCSE
T ss_pred EEEECCCCCCcchhcc------------cCCCcchhhHHHHHHHHHHHhccCcE
Confidence 9999999999998864 35688999999999999999999864
No 8
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=99.89 E-value=6e-24 Score=233.88 Aligned_cols=122 Identities=17% Similarity=0.176 Sum_probs=96.3
Q ss_pred CCCCcccccCCCCChhHHHHHHcCC----eeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHH----
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGI----KLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES---- 424 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi----~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~---- 424 (488)
.+.++|||||||||||++||++||. .+++++|||+|+.|++||+.+ ++.+.+..+||.++....++.
T Consensus 210 ~k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~N-----hp~~~~~~~di~~i~~~~~~~~~~~ 284 (784)
T 4ft4_B 210 TRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYN-----HPQTEVRNEKADEFLALLKEWAVLC 284 (784)
T ss_dssp CEEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHH-----CTTSEEEESCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHH-----CCCCceecCcHHHhhhhhhhccccc
Confidence 3569999999999999999999982 246799999999999999874 445556778887764432221
Q ss_pred --------------------------------------------------------------------------------
Q 011347 425 -------------------------------------------------------------------------------- 424 (488)
Q Consensus 425 -------------------------------------------------------------------------------- 424 (488)
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~ 364 (784)
T 4ft4_B 285 KKYVQDVDSNLASSEDQADEDSPLDKDEFVVEKLVGICYGGSDRENGIYFKVQWEGYGPEEDTWEPIDNLSDCPQKIREF 364 (784)
T ss_dssp HHTC-----------------------CCCEEEEEEEEESCSSSCSSEEEEEEETTCCTTSCEEEESGGGTTCHHHHHHH
T ss_pred ccccccccccccccccccccccccccccchhhhhcccccccccccccccchhhhcccccccccccccccccccchhcccc
Confidence
Q ss_pred --------hhhccCCccEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 011347 425 --------LIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 487 (488)
Q Consensus 425 --------l~~~~g~~DLVIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~~ 487 (488)
+....|++|||+||||||+||.+|+++ +...+++|+|+.||++|+|+|+++||..
T Consensus 365 ~~~~~~~~~~~~~G~VDvl~GGpPCQ~FS~aG~~k--------g~~~~~~D~R~~L~~~~~riv~~~rPk~ 427 (784)
T 4ft4_B 365 VQEGHKRKILPLPGDVDVICGGPPCQGISGFNRYR--------NRDEPLKDEKNKQMVTFMDIVAYLKPKY 427 (784)
T ss_dssp HHHHHHHTSSCCTTSCSEEEECCCCCSSSGGGGGS--------CTTSTTTSTTCHHHHHHHHHHHHHCCSE
T ss_pred ccccchhhccCCCCCeEEEEecCCCcchhhhhccc--------CcCccccCchhHHHHHHHHHHHHHCCCE
Confidence 011236899999999999999998743 1335688999999999999999999964
No 9
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=99.88 E-value=2.4e-23 Score=210.38 Aligned_cols=111 Identities=16% Similarity=0.318 Sum_probs=81.0
Q ss_pred CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347 355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 434 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL 434 (488)
+++|||||||+||+++||+++|+++++|+++|+|+.|+++|+.++. ...++.+||++++.+++.. .++|+
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----~~~~~~~Di~~~~~~~~~~-----~~~D~ 71 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTIEGITLEEFDR-----LSFDM 71 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCGGGCCHHHHHH-----HCCSE
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----ccccccCCHHHccHhHcCc-----CCcCE
Confidence 4789999999999999999999877889999999999999998654 2335679999999877653 26999
Q ss_pred EEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhh--ccc
Q 011347 435 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVR--SMK 487 (488)
Q Consensus 435 VIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr--~~~ 487 (488)
|+||||||+||.+|+ +.|++|+|+.||++|+|+|++++ |.+
T Consensus 72 l~~gpPCq~fS~ag~------------~~g~~d~r~~l~~~~~~~i~~~~~~P~~ 114 (343)
T 1g55_A 72 ILMSPPCQPFTRIGR------------QGDMTDSRTNSFLHILDILPRLQKLPKY 114 (343)
T ss_dssp EEECCC------------------------------CHHHHHHHHGGGCSSCCSE
T ss_pred EEEcCCCcchhhcCC------------cCCccCccchHHHHHHHHHHHhcCCCCE
Confidence 999999999998864 35688999999999999999998 753
No 10
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}
Probab=99.86 E-value=9.2e-23 Score=211.72 Aligned_cols=111 Identities=13% Similarity=0.124 Sum_probs=89.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeee----EEEeeCCHHHHHHHHHHhhhcCCC---------------C-Cc-----
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKG----VISIETSETNRRILKRWWESSGQT---------------G-EL----- 408 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~----vvsVEid~~a~~t~~~~~~~~n~~---------------g-~l----- 408 (488)
..++||||||||||+++||+++|+++++ |++||+|+.|+.+|+.+|...... + ..
T Consensus 9 ~~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~~~~~~~~~~~~~l~~~s~d~k~~~~~~~ 88 (403)
T 4dkj_A 9 KVIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSKNFNPKIERLDRDILSISNDSKMPISEYG 88 (403)
T ss_dssp EEEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCSSCCCCCBCCCTTCCCCBSSSSSCCCHHH
T ss_pred ccceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCCCcccchhhhhhhhhhccccccccccccc
Confidence 4689999999999999999999975556 999999999999999988642100 0 00
Q ss_pred --------------------ceeccccccChhhHHHhhhccCCccEEEecCCCCCccccCCCCCCCCccccccCCCCCC-
Q 011347 409 --------------------VQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPD- 467 (488)
Q Consensus 409 --------------------v~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D- 467 (488)
...+||++++.++++ +.+|||+||||||+||.+|+ +.|++|
T Consensus 89 i~~l~~~~l~~i~~~~~~~~~~~~DI~~i~~~~ip------~~vDll~ggpPCQ~fS~ag~------------~~g~~d~ 150 (403)
T 4dkj_A 89 IKKINNTIKASYLNYAKKHFNNLFDIKKVNKDNFP------KNIDIFTYSFPCQDLSVQGL------------QKGIDKE 150 (403)
T ss_dssp HHHHTTBHHHHHHHHHHHHSCBCCCGGGCCTTTSC------SSCSEEEECCCCTTTCTTSC------------CCCCCGG
T ss_pred cccccHHHHHHHHhhcccCCCcccchhhcCHhhCC------CCCcEEEEeCCCCCHHHhCC------------CCCCCcc
Confidence 024888888876653 35899999999999998864 346776
Q ss_pred --CCcchHHHHHHHHHH
Q 011347 468 --FDFSLYYEFVRVVQR 482 (488)
Q Consensus 468 --~Rs~LF~EfvRIV~~ 482 (488)
+|+.||++|+|+|++
T Consensus 151 ~~~r~~L~~~~~rii~~ 167 (403)
T 4dkj_A 151 LNTRSGLLWEIERILEE 167 (403)
T ss_dssp GCCSGGGHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHH
Confidence 999999999999998
No 11
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.80 E-value=1.2e-20 Score=214.08 Aligned_cols=119 Identities=21% Similarity=0.248 Sum_probs=92.6
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhh----HHHhh--
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKK----FESLI-- 426 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~----Ie~l~-- 426 (488)
...+++|||||||||+++||++|||. ++++++|+|+.|+.+|+.+| ++..++.+||.++.... +....
T Consensus 538 ~~~l~~iDLFaG~GGlslGl~~AG~~-~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~~di~~~~~~ 611 (1002)
T 3swr_A 538 LPKLRTLDVFSGCGGLSEGFHQAGIS-DTLWAIEMWDPAAQAFRLNN-----PGSTVFTEDCNILLKLVMAGETTNSRGQ 611 (1002)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHTSE-EEEEEECSSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHHHTCSBCTTCC
T ss_pred CCCCeEEEeccCccHHHHHHHHCCCC-ceEEEEECCHHHHHHHHHhC-----CCCccccccHHHHhhhccchhhhhhhhh
Confidence 46789999999999999999999983 57999999999999998754 44556778887764221 11111
Q ss_pred --hccCCccEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 011347 427 --HKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 487 (488)
Q Consensus 427 --~~~g~~DLVIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~~ 487 (488)
...+++|||+||||||+||.+|+.. ..+.+|+|+.||++|+|+|++++|.+
T Consensus 612 ~lp~~~~vDll~GGpPCQ~FS~ag~~~----------~~~~~d~R~~L~~~~~riv~~~rPk~ 664 (1002)
T 3swr_A 612 RLPQKGDVEMLCGGPPCQGFSGMNRFN----------SRTYSKFKNSLVVSFLSYCDYYRPRF 664 (1002)
T ss_dssp BCCCTTTCSEEEECCCCTTCCSSSCCC----------HHHHHHHTTSHHHHHHHHHHHHCCSE
T ss_pred hcccCCCeeEEEEcCCCcchhhhCCCC----------CCcccchhhHHHHHHHHHHHHhCCCE
Confidence 1235899999999999999987521 12356889999999999999999864
No 12
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.79 E-value=1.3e-20 Score=218.58 Aligned_cols=118 Identities=21% Similarity=0.286 Sum_probs=91.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHH----H----h
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE----S----L 425 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie----~----l 425 (488)
..+++|||||||||+++||++|||. ++++++|+|+.|+++|+.+| ++..++.+||.++....+. . .
T Consensus 850 ~~l~viDLFsG~GGlslGfe~AG~~-~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~gdi~~~~~~~ 923 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQAGIS-ETLWAIEMWDPAAQAFRLNN-----PGTTVFTEDCNVLLKLVMAGEVTNSLGQR 923 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHTTSE-EEEEEECCSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHTTTCSBCSSCCB
T ss_pred CCceEEecccCccHHHHHHHHCCCC-ceEEEEECCHHHHHHHHHhC-----CCCcEeeccHHHHhHhhhccchhhhhhhh
Confidence 5689999999999999999999983 67999999999999998754 3444566788766432210 0 0
Q ss_pred hhccCCccEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 011347 426 IHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 487 (488)
Q Consensus 426 ~~~~g~~DLVIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~~ 487 (488)
+...+++|||+||||||+||.+|+.+ ..+.+|+|+.||++|+|+|+++||.+
T Consensus 924 lp~~~~vDvl~GGpPCQ~FS~agr~~----------~~~~~d~R~~L~~~~lriv~~~rPk~ 975 (1330)
T 3av4_A 924 LPQKGDVEMLCGGPPCQGFSGMNRFN----------SRTYSKFKNSLVVSFLSYCDYYRPRF 975 (1330)
T ss_dssp CCCTTTCSEEEECCCCTTTCSSSCCC----------HHHHHHHHHSHHHHHHHHHHHHCCSE
T ss_pred ccccCccceEEecCCCcccccccccc----------cccccchhhHHHHHHHHHHHHhcCcE
Confidence 11125799999999999999987521 12356889999999999999999864
No 13
>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=99.79 E-value=4.9e-20 Score=178.99 Aligned_cols=86 Identities=22% Similarity=0.300 Sum_probs=70.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
++++|||||||||| ||++|||++ + .|+++..++.+||++|+.++|++ ++++|
T Consensus 32 ~~~~vidLFaGig~---Gl~~aGf~~----------------~-----~N~~~~~~~~~DI~~i~~~~i~~----~~~~D 83 (230)
T 2qrv_B 32 QPVRVLSLFEDIKK---ELTSLGFLE----------------S-----GSDPGQLKHVVDVTDTVRKDVEE----WGPFD 83 (230)
T ss_dssp CCCCEEEESSCCTT---TTTTTTSCC--------------------------CCEEEESCCTTCCHHHHHH----TCCCS
T ss_pred CCceEEEeccChhH---HHHHCCCch----------------h-----hcCCCCcEecCChhhCCHhHhcc----cCCCC
Confidence 56899999999998 899999863 1 23445556789999999988764 47899
Q ss_pred EEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 011347 434 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 486 (488)
Q Consensus 434 LVIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~ 486 (488)
||+||||||+||.+ ++|++||+||+|||+++||+
T Consensus 84 lliGG~PCQ~FS~a-------------------g~rg~Lf~ef~Riv~~~rPk 117 (230)
T 2qrv_B 84 LVYGATPPLGHTCD-------------------RPPSWYLFQFHRLLQYARPK 117 (230)
T ss_dssp EEEEECCCTTTSSC-------------------SCTHHHHHHHHHHHHHHCCC
T ss_pred EEEECCCCCccccc-------------------CCCchHHHHHHHHHHHHCcC
Confidence 99999999999965 25789999999999999996
No 14
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=99.75 E-value=7.2e-19 Score=181.50 Aligned_cols=88 Identities=23% Similarity=0.286 Sum_probs=74.3
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347 352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
-.++++|||||||||| ||++|||++ +.|+++..++.+||++|+.++|++ +++
T Consensus 186 ~~~~ikvidLFaGiGg---Gl~~aGf~v---------------------~~N~~~~~~~~~DI~~i~~~~i~~----~~~ 237 (386)
T 2pv0_B 186 RRQPVRVLSLFEDIKK---ELTSLGFLE---------------------SGSDPGQLKHVVDVTDTVRKDVEE----WGP 237 (386)
T ss_dssp GCCCCCEEEESSCCHH---HHHHTTSSC---------------------SSCCSCSEEEESCCTTCCHHHHHH----SCC
T ss_pred hhcCceeeEEeccCCh---hHhhcCccH---------------------HHcCCCCcEEeCChhhCCHhHhcc----cCC
Confidence 3457999999999997 999999864 135556556789999999988764 478
Q ss_pred ccEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 011347 432 IDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 486 (488)
Q Consensus 432 ~DLVIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~ 486 (488)
+|||+||||||+||.+ |+|++||+||+|||+++||+
T Consensus 238 ~DlliGG~PCQ~FS~A-------------------~~Rg~Lf~ef~Riv~~~rPk 273 (386)
T 2pv0_B 238 FDLVYGATPPLGHTCD-------------------RPPSWYLFQFHRLLQYARPK 273 (386)
T ss_dssp CSEEEEECCCTTTCSC-------------------SCTHHHHHHHHHHHHHHSCC
T ss_pred CCEEEECCCCCccccc-------------------CCcchHHHHHHHHHHHhCCC
Confidence 9999999999999965 35889999999999999996
No 15
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=99.59 E-value=2.5e-15 Score=150.02 Aligned_cols=157 Identities=20% Similarity=0.308 Sum_probs=116.5
Q ss_pred ccccccccccchhhHHHHhhhhccCCceeeeccccCcccccccccccCCCCCCCCCCC-CCCCcccccccCCCccCCCcC
Q 011347 163 YFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPP-EPPMTIQDAIPHTKKWWPSWD 241 (488)
Q Consensus 163 fF~fENV~~~~~~~w~~Is~fL~~i~Pe~Vds~~fsAa~R~RgY~hNLP~~nR~~~~p-~~p~tiqd~lp~~~~~wp~wd 241 (488)
||++|||..+-...+.+|.++|. ..+.++||..|.||+|+|.||.++|...+....+ .+.+|++|+|...+.+
T Consensus 135 ~~l~ENV~gl~~~~~~~~~~~l~-~~~~vl~a~~~~PQ~R~R~~i~~~~~~~~p~~~~~~~~~tv~d~l~~~~~~----- 208 (295)
T 2qrv_A 135 FWLFENVVAMGVSDKRDISRFLE-SNPVMIDAKEVSAAHRARYFWGNLPGMNRPLASTVNDKLELQECLEHGRIA----- 208 (295)
T ss_dssp EEEEEEESSBCHHHHHHHHHHHT-SCCCCEEGGGTSSBCCEEEEEECCTTSSSCCCCCSSCCCSGGGTSCTTCEE-----
T ss_pred EEEEEcCcchhhcCccHHHHHHh-cCcEEeecceECCccCcEEEEEEecCccCCCcccccCcccHHHHhcCCccc-----
Confidence 88999999998888888999996 5999999999999999999999999876522111 1368999999865432
Q ss_pred CCcccceeeccCCchhHHHHHHHHHHhhccCCCchhhhHHHHHhhcccceeeecccccCCCChhhHHHHhcCCCCCcccc
Q 011347 242 TRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAA 321 (488)
Q Consensus 242 ~r~kl~ci~t~~~~~~~l~~~i~~~~~~~~~~~~~~~q~~vl~~c~k~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~ 321 (488)
...++++|++.+..+.. .++ +.+.. ..+++.+.|++.|+.||+|||++|+..+
T Consensus 209 ~~~~~~~i~~~~~~~~~-----------g~~--------------~~~~~--~~~~~~R~lt~rE~arlqgFPd~~~~~~ 261 (295)
T 2qrv_A 209 KFSKVRTITTRSNSIKQ-----------GKD--------------QHFPV--FMNEKEDILWCTEMERVFGFPVHYTDVS 261 (295)
T ss_dssp SSSSBC---------------------------------------CCSCE--EETTEEECCCHHHHHHHHTCCTTTTCCT
T ss_pred ccCccccccCCCceecC-----------CCC--------------CCccc--ccCCCcCCCCHHHHHHHcCCCHHHeeCC
Confidence 23455565543211110 000 01111 2357789999999999999999999998
Q ss_pred CCChHHHHHhhhhhcccCcchhhhccccccC
Q 011347 322 GNSLTARLESLRHCFQTDTLGYHLSVLKSMF 352 (488)
Q Consensus 322 ~l~~teR~k~Lgnsfqvdti~~~lsvLK~~f 352 (488)
++|.++++|.+||+..++.+..+...|++++
T Consensus 262 ~~s~~~~~~qiGNaVpv~~~~~i~~~i~~~l 292 (295)
T 2qrv_A 262 NMSRLARQRLLGRSWSVPVIRHLFAPLKEYF 292 (295)
T ss_dssp TCCHHHHHHHHHTSCCHHHHHHHHGGGGGGS
T ss_pred CcCHHHHhccEecCcCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998888765
No 16
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=99.49 E-value=4.5e-15 Score=150.21 Aligned_cols=177 Identities=13% Similarity=0.131 Sum_probs=113.9
Q ss_pred CCCccccccccccch-hhHHHHhhhh----ccCCceeeecccc-Cccccccccc----ccCCCC--------CCCCCCCC
Q 011347 160 QPPYFFYGNVVDVSI-DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL----HNLPTT--------NRFHIPPE 221 (488)
Q Consensus 160 ~ppfF~fENV~~~~~-~~w~~Is~fL----~~i~Pe~Vds~~f-sAa~R~RgY~----hNLP~~--------nR~~~~p~ 221 (488)
+|.||++|||..+-. ..|..|.+.| |.++..++||.+| .||+|+|.|+ ..++.. ..+|..+.
T Consensus 111 ~P~~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~~~~~f~~~~~~~~~~P~~~~ 190 (333)
T 4h0n_A 111 NVDYILMENVKGFENSTVRNLFIDKLKECNFIYQEFLLCPSTVGVPNSRLRYYCTARRNNLTWPFKRRDEIITRLPKDFG 190 (333)
T ss_dssp TCCEEEEEECTTGGGSHHHHHHHHHHHHTTEEEEEEEECTTTTTCSCCCCEEEEEEEETTSCCCSCCCSSCBSSCSSCCC
T ss_pred CCCEEEEecchhhhhhhHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEeCCCCCCCCcccchhhhCCCCcc
Confidence 399999999998864 3577777777 7788999999999 9999999997 222221 01121122
Q ss_pred CCCcccccccCC-----------CccCCCcCCCc--ccce--eeccCC------ch------hHHHHHHHHHHhhccCCC
Q 011347 222 PPMTIQDAIPHT-----------KKWWPSWDTRK--HLSC--INSGTS------GI------SQLCERFEKLLRDSRGVL 274 (488)
Q Consensus 222 ~p~tiqd~lp~~-----------~~~wp~wd~r~--kl~c--i~t~~~------~~------~~l~~~i~~~~~~~~~~~ 274 (488)
.+.+|.|+|+.. .+||..+|-.+ ..+| .+.... ++ ....+++-+.+....+
T Consensus 191 ~~~~l~d~Le~~~~~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~k~~~~~~~g~gs~~~~~~~~~~~~~~~~~~~~~~-- 268 (333)
T 4h0n_A 191 VPHSLESIIEEDVDEKFLVPEKMLRCAKVFDICYKTSKRSCCFTKAYTHYADGTGSIFTDKPREVVQKCYAAAAQNEI-- 268 (333)
T ss_dssp SCCCSSTTCCSSCCGGGBCCHHHHTTGGGCCEECTTCSCCCCCCTTBTTBSSSSCCEECSSCHHHHHHHHHHGGGSCT--
T ss_pred ccccHHHHhccCCcccccCCHHHHHHHHHhccCChhhhhhhhhccccceEEeccCceeccccccchhhhhcccccCCC--
Confidence 257899999531 14555555222 1111 111110 00 0011222221211110
Q ss_pred chhhhHHHHHhhcccceeeecccccCCCChhhHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcchhhhcccc
Q 011347 275 SSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLK 349 (488)
Q Consensus 275 ~~~~q~~vl~~c~k~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti~~~lsvLK 349 (488)
..+.|. .+..+.+++.|+|.|++||+|||++||....+|.++|||.+|||..|++++++.+.|.
T Consensus 269 G~~~~~-----------~~~~~~~~R~lt~~E~~rl~gfp~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~l~ 332 (333)
T 4h0n_A 269 GGEKFV-----------ELFKELKLRYFTPKEVLMIMCFPKSYNLPTNISMKQCYRLLGNSVNVKVISELLKILF 332 (333)
T ss_dssp TCHHHH-----------HHHHTTTCBCCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred Ccccce-----------eeccCCCcCCCCHHHHHHhCCCCccccCCCCCCHHHHHHHhCCccCHHHHHHHHHHHh
Confidence 011111 2234678999999999999999999998788999999999999999999999987763
No 17
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=99.43 E-value=1.9e-14 Score=145.45 Aligned_cols=178 Identities=15% Similarity=0.161 Sum_probs=117.4
Q ss_pred CCCccccccccccch-hhHHHHhhhh----ccCCceeeecccc-Cccccccccc-ccCCCCCCCCCC--CCCCCcccccc
Q 011347 160 QPPYFFYGNVVDVSI-DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL-HNLPTTNRFHIP--PEPPMTIQDAI 230 (488)
Q Consensus 160 ~ppfF~fENV~~~~~-~~w~~Is~fL----~~i~Pe~Vds~~f-sAa~R~RgY~-hNLP~~nR~~~~--p~~p~tiqd~l 230 (488)
+|.||++|||..+-. ..|..|.+.| |.++..++||.+| .||+|+|.|+ +....- .+|.. +.+..+|+|+|
T Consensus 122 ~P~~~~lENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~yGvPQ~R~R~fivg~r~~f-~fP~~~~~~~~~~l~d~L 200 (327)
T 3qv2_A 122 KPKHIFIENVPLFKESLVFKEIYNILIKNQYYIKDIICSPIDIGIPNSRTRYYVMARLTPF-KNEIQLHQEKESMISNYL 200 (327)
T ss_dssp CCSEEEEEECGGGGGSHHHHHHHHHHHHTTCEEEEEEECGGGGTCSBCCCEEEEEEESSCC-CSCCCCCCCSCCCGGGGC
T ss_pred CCCEEEEEchhhhcChHHHHHHHHHHHhCCCEEEEEEEeHHHcCCCccceEEEEEEEeCCC-CCCCcccccccccHHHHh
Confidence 799999999998864 4677787777 6788999999999 9999999994 444331 12211 11358899999
Q ss_pred cC--------CCccCCCcCCC--------cccceeeccCCchhHHHHHHHHHHhhccCCCchhhhHHHHHhhcccceeee
Q 011347 231 PH--------TKKWWPSWDTR--------KHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWV 294 (488)
Q Consensus 231 p~--------~~~~wp~wd~r--------~kl~ci~t~~~~~~~l~~~i~~~~~~~~~~~~~~~q~~vl~~c~k~nlvW~ 294 (488)
+. ..+||..|... ++-.|++..+ +.. ....++.+..... ......++++.
T Consensus 201 e~~~~~~y~l~~~~~~~~~~~~di~~~~~~~~~~~t~~y---~~y-------~~~~gs~l~~~~~----~~~~~~~~~~~ 266 (327)
T 3qv2_A 201 DNNVNESYSIPSDLILKKGMLFDIVGKDDKRTCCFTKSY---TKI-------VEGTGSIYCPIEP----HFIPVKKAEDL 266 (327)
T ss_dssp CSSCCGGGBCCHHHHHHHGGGSCEEETTSSCBCCCCTTT---TTS-------STTSCCEEESSCS----SCCCCSSGGGG
T ss_pred cccccccccCCHHHHHhhhcccccccccccccccccccc---eEE-------ecCCCceeecccc----cccccCCceee
Confidence 73 22233322211 0111222111 000 0001111100000 00012246677
Q ss_pred cccccCCCChhhHHHHhcCCCCCccc-cCCChHHHHHhhhhhcccCcchhhhccccccC
Q 011347 295 GAYKLGPVDPEHIELILGYPSNHTQA-AGNSLTARLESLRHCFQTDTLGYHLSVLKSMF 352 (488)
Q Consensus 295 g~~~~~ple~~E~E~i~GfP~~~T~~-~~l~~teR~k~Lgnsfqvdti~~~lsvLK~~f 352 (488)
.+++++.|+|.|+.||+|||++|+.. .++|.+++||.+|||..++++..+...|+++.
T Consensus 267 ~~~~~R~lt~~E~~rlqgfP~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~l~~~l 325 (327)
T 3qv2_A 267 LNKNLRYFTPNEIKKIHGFSSNFTTQIDGLTDKQQYQCLGNSVSCFVIAQLMEYLFDDL 325 (327)
T ss_dssp TTSCCBCCCHHHHHHHTTCCTTCCSCCTTCCHHHHHHHHHTSCCHHHHHHHHHHHTTTS
T ss_pred cCCccccCcHHHHHHhCcCCHHHcCCcCCCCHHHHHHHccCccCHHHHHHHHHHHHHHh
Confidence 88999999999999999999999987 68999999999999999999999998887653
No 18
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}
Probab=98.98 E-value=1.4e-10 Score=120.41 Aligned_cols=185 Identities=13% Similarity=0.153 Sum_probs=111.3
Q ss_pred CCCCccccccccccchh----hHHHHhhhh----ccCCceeeecccc-Ccccccccccc------cCCCCCCC---CCCC
Q 011347 159 AQPPYFFYGNVVDVSID----CWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLH------NLPTTNRF---HIPP 220 (488)
Q Consensus 159 ~~ppfF~fENV~~~~~~----~w~~Is~fL----~~i~Pe~Vds~~f-sAa~R~RgY~h------NLP~~nR~---~~~p 220 (488)
.+|.||++|||..+-.. .|..|.+.| |.+++.++||..| .||+|.|.|+= ..|..... .++.
T Consensus 176 ~~Pk~~l~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~f~fP~~~~~~~~~~~~ 255 (403)
T 4dkj_A 176 EMPKYLLMENVKNLLSHKNKKNYNTWLKQLEKFGYKSKTYLLNSKNFDNCQNRERVFCLSIRDDYLEKTGFKFKELEKVK 255 (403)
T ss_dssp GSCSEEEEEEEGGGGSHHHHHHHHHHHHHHHHTTEEEEEEEEEGGGTTCSBCCEEEEEEEEEHHHHHHHCCCCCCGGGCC
T ss_pred cCCCEEEEecchhhhhhccchHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEcCCCCCCCccccccccccc
Confidence 78999999999998653 466676666 5689999999999 99999999962 12221110 0111
Q ss_pred CCCCcccccccCC--CccC-------CCc-CCCcccceeec-cCCchhHHHHHHHHHHhhccC-CCchhhhHHHHHhhcc
Q 011347 221 EPPMTIQDAIPHT--KKWW-------PSW-DTRKHLSCINS-GTSGISQLCERFEKLLRDSRG-VLSSQQQRDILHRSEK 288 (488)
Q Consensus 221 ~~p~tiqd~lp~~--~~~w-------p~w-d~r~kl~ci~t-~~~~~~~l~~~i~~~~~~~~~-~~~~~~q~~vl~~c~k 288 (488)
.++.+|.|+|+.. .+|- |.. ..+.++.+..+ ......+ + +++.. ..+ .++... .+..
T Consensus 256 ~~~~~l~dile~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~v~~-~~~~~~Tlt~------~~~~ 324 (403)
T 4dkj_A 256 NPPKKIKDILVDSSNYKYLNLNKYETTTFRETKSNIISRPLKNYTTFNS--E--NYVYN-INGIGPTLTA------SGAN 324 (403)
T ss_dssp CCCCCGGGGCCCCSCCCCCCCTTSCCCCCEECTTSBEEEECTTSCSCGG--G--SEEEE-TTSBBCCCCS------SSGG
T ss_pred cccccHHHHhccccccccchhhhhccccccccccchhcccccccccccc--C--cceec-CCCcccceec------CCCC
Confidence 2357999999743 1211 100 00111111000 0000000 0 00000 000 000000 0111
Q ss_pred cceeeecccccCCCChhhHHHHhcCCC-CCcccc--C-CChHHHHHhhhhhcccCcchhhhccccccCCC
Q 011347 289 LNLVWVGAYKLGPVDPEHIELILGYPS-NHTQAA--G-NSLTARLESLRHCFQTDTLGYHLSVLKSMFPG 354 (488)
Q Consensus 289 ~nlvW~g~~~~~ple~~E~E~i~GfP~-~~T~~~--~-l~~teR~k~Lgnsfqvdti~~~lsvLK~~fp~ 354 (488)
.-++-....+++.|+|.|+.||+|||+ +|.... + ++.+++||.+|||..|+++..++..|+..+.+
T Consensus 325 ~~~~~~~~~~~R~ltprE~~rlqGFpd~~~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~i~~~l~~ 394 (403)
T 4dkj_A 325 SRIKIETQQGVRYLTPLECFKYMQFDVNDFKKVQSTNLISENKMIYIAGNSIPVKILEAIFNTLEFVNNE 394 (403)
T ss_dssp GSCEEEETTEEEECCHHHHHHHTTCCHHHHHHHHHTSCSCHHHHHHHHHTSCCHHHHHHHHHTCCCCCCC
T ss_pred ceeEEccCCCcccCCHHHHHHHcCCCHHHhhhhhccCCCCHHHHHhhcCCccCHHHHHHHHHHHHHHHhc
Confidence 223333567899999999999999999 687653 3 79999999999999999999999888876654
No 19
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=98.98 E-value=4.6e-11 Score=117.82 Aligned_cols=192 Identities=17% Similarity=0.179 Sum_probs=101.4
Q ss_pred cCCCCccccccccccch----hhHHHHhhhh----ccCCceeeecccc-Cccccccccc----ccCCCCCCCCCCCCCCC
Q 011347 158 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL----HNLPTTNRFHIPPEPPM 224 (488)
Q Consensus 158 ~~~ppfF~fENV~~~~~----~~w~~Is~fL----~~i~Pe~Vds~~f-sAa~R~RgY~----hNLP~~nR~~~~p~~p~ 224 (488)
..+|.||++|||..+-. ..+..|.+.| |.+.+.++||.+| .||+|+|.|+ .+++..--+|.......
T Consensus 100 ~~~Pk~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vlna~~yGvPQ~R~Rvfivg~r~~~~~~~~~p~~~~~~~ 179 (331)
T 3ubt_Y 100 QKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIGFRKELNINYLPPIPHLIKP 179 (331)
T ss_dssp HHCCSEEEEEECCGGGGCTTSHHHHHHHHHHHHHTEEEEEEEEEGGGTTCSBCCEEEEEEEEEGGGCCCCCCCCCCSCCC
T ss_pred ccCCeEEEeeeecccccccccchhhhhhhhhccCCcEEEEEecccccCCCCcccceEEEEEEcCCCCcCCCCCCCcCCCC
Confidence 45899999999987743 4566666666 6799999999999 9999999997 33333322222111256
Q ss_pred cccccccCCC-ccCCCcCCCcc--cceeecc----CC--chhHHH-HHHHHH------HhhccCCCc-hhhhHHHHHhhc
Q 011347 225 TIQDAIPHTK-KWWPSWDTRKH--LSCINSG----TS--GISQLC-ERFEKL------LRDSRGVLS-SQQQRDILHRSE 287 (488)
Q Consensus 225 tiqd~lp~~~-~~wp~wd~r~k--l~ci~t~----~~--~~~~l~-~~i~~~------~~~~~~~~~-~~~q~~vl~~c~ 287 (488)
|+.|++.... .-+|.+++... ..++... .. ...... .+.+.. +..++.... ......+...++
T Consensus 180 t~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (331)
T 3ubt_Y 180 TFKDVIWDLKDNPIPALDKNKTNGNKCIYPNHEYFIGSYSTIFMSRNRVRQWNEPAFTVQASGRQCQLHPQAPVMLKVSK 259 (331)
T ss_dssp CGGGTSGGGSSSCEECBGGGBCCGGGSSSTTCEECCSCCCTTGGGSCCBCCTTSCBCCCCSCSTTCCBCTTSCCCEEEET
T ss_pred cHHHHhhhcccCCcccccccccccccccccchhhhcccccccccccccccccccccccccccCcccccccccceeeeecC
Confidence 7777762110 01111111000 0000000 00 000000 000000 000000000 000000000011
Q ss_pred ccceee-ecccccCCCChhhHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcchhhhccccc
Q 011347 288 KLNLVW-VGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS 350 (488)
Q Consensus 288 k~nlvW-~g~~~~~ple~~E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti~~~lsvLK~ 350 (488)
..+-.+ ..++..+.||+.|+.||+|||++|+.- +.+.++++|.+||+..+....++...++.
T Consensus 260 ~~~~~~~~~~~~~R~LT~rE~aRLQgFPd~f~f~-~~s~~~~ykqiGNAVpp~la~~I~~~I~~ 322 (331)
T 3ubt_Y 260 NLNKFVEGKEHLYRRLTVRECARVQGFPDDFIFH-YESLNDGYKMIGNAVPVNLAYEIAKTIKS 322 (331)
T ss_dssp TEEECCTTCGGGCCBCBHHHHHHHHTCCTTCCCC-CSBHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCCcccCCCCCcCcCCCHHHHHHhCCCCCCCEeC-CCCHHHHhhhCccCccHHHHHHHHHHHHH
Confidence 111111 134557999999999999999999863 35899999999999988887777665544
No 20
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=98.90 E-value=1.5e-09 Score=115.28 Aligned_cols=177 Identities=13% Similarity=0.236 Sum_probs=105.1
Q ss_pred cCCCCccccccccccch----hhHHHHhhhh----ccCC---------ceeeeccccCccccccccc----ccCCCCCCC
Q 011347 158 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLE---------PEFVNSQYFSALSRREGYL----HNLPTTNRF 216 (488)
Q Consensus 158 ~~~ppfF~fENV~~~~~----~~w~~Is~fL----~~i~---------Pe~Vds~~fsAa~R~RgY~----hNLP~~nR~ 216 (488)
..+|.||++|||..+-. ..+..|.+.| |.+. +.++||++|.||+|.|.|+ .+++....|
T Consensus 217 ~~rPk~fvlENV~gl~s~~~g~~f~~i~~~L~~lGY~v~~~~~~g~~~~~vlnA~~~vPQ~R~R~fivg~r~~~~~~~~F 296 (482)
T 3me5_A 217 ARRPAMFVLENVKNLKSHDKGKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHRERIVLVGFRRDLNLKADF 296 (482)
T ss_dssp HHCCSEEEEEEETTTTTGGGGHHHHHHHHHHHHTTEEETTTTCCSTTCTTEEEGGGTSSBCCEEEEEEEEEGGGCCCTTC
T ss_pred HcCCcEEEEeCcHHHhcccCCcHHHHHHHHHhcCCcEEEeccccCcccceeeeccccCCccceEEEEEEEecCcccccCc
Confidence 46899999999999854 3566676666 4443 6799999999999999997 244332222
Q ss_pred C------CCCCCCCcccccccCCCccCCCcCCCcccceeeccCCchhHHHHHHHHHH----hhccCC----CchhhhHHH
Q 011347 217 H------IPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLL----RDSRGV----LSSQQQRDI 282 (488)
Q Consensus 217 ~------~~p~~p~tiqd~lp~~~~~wp~wd~r~kl~ci~t~~~~~~~l~~~i~~~~----~~~~~~----~~~~~q~~v 282 (488)
. ..|.++.||.|+|.... + .|. ..+ .++-+.+.+.- .+.+++ ...+...
T Consensus 297 ~~~~~~~~~p~~~~~l~diLe~~~------~--~ky--~l~-----~~~~~~l~~~~~~~~~~g~gf~~~i~~~~~~~-- 359 (482)
T 3me5_A 297 TLRDISECFPAQRVTLAQLLDPMV------E--AKY--ILT-----PVLWKYLYRYAKKHQARGNGFGYGMVYPNNPQ-- 359 (482)
T ss_dssp CGGGGGGGSCSSCCCTGGGSCSSC------C--GGG--BCC-----HHHHHHHHHHHHC----------CEECTTSGG--
T ss_pred CccccccccCCCcccHHHHhhccc------c--ccc--ccC-----HHHHHHHHHHHHhhhcccCCcccceecCCccc--
Confidence 2 23555678999996321 0 000 000 01111111100 000000 0000000
Q ss_pred HHhhcc---------ccee----e-------------ecccccCCCChhhHHHHhcCCCC--CccccCCChHHHHHhhhh
Q 011347 283 LHRSEK---------LNLV----W-------------VGAYKLGPVDPEHIELILGYPSN--HTQAAGNSLTARLESLRH 334 (488)
Q Consensus 283 l~~c~k---------~nlv----W-------------~g~~~~~ple~~E~E~i~GfP~~--~T~~~~l~~teR~k~Lgn 334 (488)
..|+. .+++ | ....+++.|||.|++||+|||+. ++..+.++.+++||.+||
T Consensus 360 -~~~~Ti~a~~~k~gs~~~i~~~~~~~~~~~~~~~~~~~~~~~R~lTprE~~rlqgFp~~~~~~~~~~~s~~~~y~q~GN 438 (482)
T 3me5_A 360 -SVTRTLSARYYKDGAEILIDRGWDMATGEKDFDDPLNQQHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGN 438 (482)
T ss_dssp -GGTCCBCCC---CCSSSEECCCCCHHHHHHCTTCTTGGGGCCEECCHHHHHHHHTSSCTTCCCSCCCSCHHHHHHHHHT
T ss_pred -ccceeeEEeeeccCcceeecccccccCCccccccccccCCCcccCCHHHHHHHcCCCCccccceeccCCHHHHHHHcCC
Confidence 00100 1111 1 01357899999999999999943 334458999999999999
Q ss_pred hcccCcchhhhccccccC
Q 011347 335 CFQTDTLGYHLSVLKSMF 352 (488)
Q Consensus 335 sfqvdti~~~lsvLK~~f 352 (488)
+..|+++..+...|+.++
T Consensus 439 sV~v~v~~~i~~~l~~~l 456 (482)
T 3me5_A 439 SVVVPVFAAVAKLLEPKI 456 (482)
T ss_dssp SCCHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHH
Confidence 999999998887776543
No 21
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=98.88 E-value=1.6e-09 Score=109.16 Aligned_cols=183 Identities=13% Similarity=0.100 Sum_probs=104.0
Q ss_pred cCCCCccccccccccch----hhHHHHhhhh----ccCCceeeecccc-CcccccccccccCC-CCCC-CCCCCC---CC
Q 011347 158 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLHNLP-TTNR-FHIPPE---PP 223 (488)
Q Consensus 158 ~~~ppfF~fENV~~~~~----~~w~~Is~fL----~~i~Pe~Vds~~f-sAa~R~RgY~hNLP-~~nR-~~~~p~---~p 223 (488)
..+|.||++|||..+-. ..|..|.+.| |.++..++||..| .||+|.|.|+=..- ..+. ....|. ..
T Consensus 110 ~~~P~~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~~iv~~~~~~~~~~~~fP~~~~~~ 189 (327)
T 2c7p_A 110 EKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELN 189 (327)
T ss_dssp HHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEEEEGGGGTCSBCCEEEEEEEEBGGGCCCCCCCCCCCCCC
T ss_pred hccCcEEEEeCcHHHHhccccHHHHHHHHHHHhCCCEEEEEEEEHHHcCCCccceEEEEEEEeCCCCcccccCCCCcCCC
Confidence 35899999999998854 3566776666 6788999999999 99999999984321 1110 011233 25
Q ss_pred CcccccccCC---CccCCCcCCCcccceeeccC-CchhHHHHHH--HHHH--hhc-cCCCchhhhHHHHHh----hcc-c
Q 011347 224 MTIQDAIPHT---KKWWPSWDTRKHLSCINSGT-SGISQLCERF--EKLL--RDS-RGVLSSQQQRDILHR----SEK-L 289 (488)
Q Consensus 224 ~tiqd~lp~~---~~~wp~wd~r~kl~ci~t~~-~~~~~l~~~i--~~~~--~~~-~~~~~~~~q~~vl~~----c~k-~ 289 (488)
.|+.|+|... ..|..+.. .++-.+.... +......+.+ .+.. .+. -+.+... |... +.+ .
T Consensus 190 ~tl~d~l~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T----i~~~~~~~~~~~~ 263 (327)
T 2c7p_A 190 TFVKDLLLPDSEVEHLVIDRK--DLVMTNQEIEQTTPKTVRLGIVGKGGQGERIYSTRGIAIT----LSAYGGGIFAKTG 263 (327)
T ss_dssp CCGGGTCCCGGGTGGGEECCT--TCEECSCCCSSCCSSCCEEEESTTCCTTCEEEETTSCBCC----CCSSCCSTTTTTC
T ss_pred CcHHHHhcccCCcccccccCC--cceeEeeccccCccchhhhhhccCCccccccccCCCCcCc----eecCCCCccCCCC
Confidence 7899998521 11110000 0000000000 0000000000 0000 000 0000000 0000 111 1
Q ss_pred ceeeecccccCCCChhhHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcchhhhccccc
Q 011347 290 NLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS 350 (488)
Q Consensus 290 nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti~~~lsvLK~ 350 (488)
+.+. +.+.+.|++.|+.||+|||++|+. ..+.++++|.+||+..+.....+...|+.
T Consensus 264 ~~~~--~~~~R~LT~rE~aRLQgFPd~f~f--~gs~~~~ykqIGNAVp~~l~~~Ia~~i~~ 320 (327)
T 2c7p_A 264 GYLV--NGKTRKLHPRECARVMGYPDSYKV--HPSTSQAYKQFGNSVVINVLQYIAYNIGS 320 (327)
T ss_dssp EEEE--TTEEEECCHHHHHHHTTCCTTSCC--CSSHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccCC--CCCCcCCCHHHHHHHCCCCcCcEe--CCCHHHHHhHccCCCCHHHHHHHHHHHHH
Confidence 2222 678899999999999999999997 57999999999999999888877666654
No 22
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=98.81 E-value=5.1e-09 Score=105.77 Aligned_cols=54 Identities=19% Similarity=0.311 Sum_probs=48.0
Q ss_pred cccccCCCChhhHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcchhhhccc
Q 011347 295 GAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL 348 (488)
Q Consensus 295 g~~~~~ple~~E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti~~~lsvL 348 (488)
.+.+.+.|++.|+.||+|||++|+..++++.++++|.+||+..|+.+..++..|
T Consensus 288 h~~~~R~lT~RE~aRLqgFPd~f~f~g~~s~~~~ykqiGNAVpv~v~~~I~~~l 341 (343)
T 1g55_A 288 LILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKIL 341 (343)
T ss_dssp HTTCEECCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred CCCCccccCHHHHHHHcCCChhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHH
Confidence 466789999999999999999999876789999999999999999888776544
No 23
>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=98.71 E-value=2.7e-09 Score=103.85 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=45.1
Q ss_pred CCccccccccccchhhHHHHhhhhccCCceeeeccccCcccccccccccCCCCCC
Q 011347 161 PPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNR 215 (488)
Q Consensus 161 ppfF~fENV~~~~~~~w~~Is~fL~~i~Pe~Vds~~fsAa~R~RgY~hNLP~~nR 215 (488)
|.||++|||..|-..+...|.+||. +.+.+|||.+|.+++|+|.||+|+|.+++
T Consensus 123 P~~fv~ENV~gL~~~~~~~i~~~l~-~~~~vLnA~dfgvpQrRr~f~g~~~~~~~ 176 (230)
T 2qrv_B 123 PFFWMFVDNLVLNKEDLDVASRFLE-MEPVTIPDVHGGSLQNAVRVWSNIPAIRS 176 (230)
T ss_dssp CCEEEEEECSCSCHHHHHHHHHHHT-SCCEECCCCCSCC----CEEEECSTTSST
T ss_pred CcEEEEeccHHhhhccHHHHHHHHc-CCcEEEEcccCCcCcccEEEEeecCCCCc
Confidence 3467899999998888899999994 89999999999999999999999998865
No 24
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=98.41 E-value=2.5e-07 Score=102.08 Aligned_cols=55 Identities=7% Similarity=0.042 Sum_probs=44.2
Q ss_pred ccceeeecccccCCCChhhHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcchhh
Q 011347 288 KLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYH 344 (488)
Q Consensus 288 k~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti~~~ 344 (488)
..+..++-+.+.+.|||.|+.||+|||++|+.. -+.++++|.+||+.-+.....+
T Consensus 679 ~~~~~~iHp~~~R~LTpRE~ARLQgFPD~y~f~--Gs~~~~ykQIGNAVpp~lA~aI 733 (784)
T 4ft4_B 679 PHNQVIIHPTQARVLTIRENARLQGFPDYYRLF--GPIKEKYIQVGNAVAVPVARAL 733 (784)
T ss_dssp SSSSEEECSSSSSBCCHHHHHHHTTCCTTCCCC--SCHHHHHHHHHHSCCHHHHHHH
T ss_pred CCCCeecCCCCCcCCcHHHHHHHCCCCCCCEeC--CCHHHHHhhccCCCCHHHHHHH
Confidence 334455567788999999999999999999874 4899999999999766654444
No 25
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=98.21 E-value=6e-07 Score=92.17 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=40.4
Q ss_pred ccccCCCChhhHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcchhhhcccc
Q 011347 296 AYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLK 349 (488)
Q Consensus 296 ~~~~~ple~~E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti~~~lsvLK 349 (488)
+.+-++|++-|+-||+|||++|... .+.++.++.+||+.-+.....+-..++
T Consensus 313 P~~~R~lTvRE~ARlQsFPD~f~f~--g~~~~~~~qIGNAVPp~la~aia~~I~ 364 (376)
T 3g7u_A 313 PYHPRVITPREAARLQGFPDWFRFH--VTKWHSFRQIGNSVSPIVAEYILKGLY 364 (376)
T ss_dssp SSSSSBCCHHHHHHHHTCCTTCCCC--SSHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred CccCcCCCHHHHHHhCCCCcceEEC--CChHHhheeeecCCCHHHHHHHHHHHH
Confidence 4567999999999999999999884 578888999999976554444433333
No 26
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=97.93 E-value=2.4e-05 Score=78.66 Aligned_cols=85 Identities=15% Similarity=0.084 Sum_probs=61.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC--CcceeccccccChhhHHHhhhccCC
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g--~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
.+.+|||||||.|++++.+.+.|. .|++||+++.+.+..+.+....+... ..++.+|+.++... +....+.
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~----~~~~~~~ 225 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQR----EERRGST 225 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHH----HHHHTCC
T ss_pred CCCcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHH----HHhcCCC
Confidence 457899999999999999999986 37899999999999888765433221 23556777654221 1112357
Q ss_pred ccEEEecCCCCCcc
Q 011347 432 IDFVICQNSVPQIP 445 (488)
Q Consensus 432 ~DLVIGGpPCQ~FS 445 (488)
||+|+..|||.+.+
T Consensus 226 fD~Ii~dPP~~~~~ 239 (332)
T 2igt_A 226 YDIILTDPPKFGRG 239 (332)
T ss_dssp BSEEEECCCSEEEC
T ss_pred ceEEEECCccccCC
Confidence 99999999997655
No 27
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=97.91 E-value=2.8e-05 Score=79.05 Aligned_cols=86 Identities=19% Similarity=0.146 Sum_probs=62.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC-C-CCcceeccccccChhhHHHhhhccCC
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-T-GELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~-~-g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
.+-+|||||||+|++++.+.+.|. ..|++||+++.+.+..+.+....+. . ...++.+|+.++.. .+....+.
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~--~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~----~~~~~~~~ 293 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLR----TYRDRGEK 293 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHH----HHHHTTCC
T ss_pred CCCeEEEeeccCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHH----HHHhcCCC
Confidence 567899999999999999999884 3588999999999998887654322 2 22355677665422 11112357
Q ss_pred ccEEEecCCCCCcc
Q 011347 432 IDFVICQNSVPQIP 445 (488)
Q Consensus 432 ~DLVIGGpPCQ~FS 445 (488)
||+|+..||+...|
T Consensus 294 fD~Ii~dpP~~~~~ 307 (396)
T 3c0k_A 294 FDVIVMDPPKFVEN 307 (396)
T ss_dssp EEEEEECCSSTTTC
T ss_pred CCEEEECCCCCCCC
Confidence 99999999987665
No 28
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=97.85 E-value=9.1e-06 Score=84.30 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=47.6
Q ss_pred CCccccccccccchhhHHHHhhhhccCCceeeeccccCcccccccccccCCCCCCC
Q 011347 161 PPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRF 216 (488)
Q Consensus 161 ppfF~fENV~~~~~~~w~~Is~fL~~i~Pe~Vds~~fsAa~R~RgY~hNLP~~nR~ 216 (488)
|.||++|||..|..+...+|.+||. +++.+|||.+|.+++|+|-||+|+|++++.
T Consensus 279 P~~fv~ENV~gL~~~~~~~i~~~L~-v~~~VLnA~dyGVPQrRrRf~g~~~~~~~~ 333 (386)
T 2pv0_B 279 PFFWMFVDNLVLNKEDLDVASRFLE-MEPVTIPDVHGGSLQNAVRVWSNIPAIRSR 333 (386)
T ss_dssp CCEEEEEECSCSCHHHHHHHHHHTT-SCCCEEECCCSSSCCCEEEEEECSSSSSTT
T ss_pred CcEEEEEechhhhhcchHHHHHHHc-CCeEEEEccccCccccccEEEEECCCcCCc
Confidence 4478999999998888889999995 899999999997776666699999999873
No 29
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=97.77 E-value=4.7e-05 Score=70.67 Aligned_cols=81 Identities=17% Similarity=0.182 Sum_probs=61.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+.+|||+.||.|+++..|.+.|. .|+++|+++.+.+..+.+....+. ....++.+|+.++.. .+.|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---------~~~~ 145 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGM---RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS---------FLKA 145 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG---------GCCC
T ss_pred CCCEEEECccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc---------cCCC
Confidence 467899999999999999999984 368999999998888876543321 122345677765431 2589
Q ss_pred cEEEecCCCCCccc
Q 011347 433 DFVICQNSVPQIPN 446 (488)
Q Consensus 433 DLVIGGpPCQ~FS~ 446 (488)
|+|+..+||..+..
T Consensus 146 D~v~~~~~~~~~~~ 159 (241)
T 3gdh_A 146 DVVFLSPPWGGPDY 159 (241)
T ss_dssp SEEEECCCCSSGGG
T ss_pred CEEEECCCcCCcch
Confidence 99999999998774
No 30
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=97.76 E-value=8.1e-05 Score=67.29 Aligned_cols=78 Identities=21% Similarity=0.186 Sum_probs=59.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||++||.|+++..+.+.|.. .++++|+++.+.+..+.+....+. ...++.+|+.++. +.+|
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-----------~~~D 114 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN-----------SRVD 114 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC-----------CCCS
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC-----------CCCC
Confidence 4578999999999999999998853 478999999999888876543322 2335567777653 3699
Q ss_pred EEEecCCCCCcc
Q 011347 434 FVICQNSVPQIP 445 (488)
Q Consensus 434 LVIGGpPCQ~FS 445 (488)
+|+..||+...+
T Consensus 115 ~v~~~~p~~~~~ 126 (207)
T 1wy7_A 115 IVIMNPPFGSQR 126 (207)
T ss_dssp EEEECCCCSSSS
T ss_pred EEEEcCCCcccc
Confidence 999999976554
No 31
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=97.74 E-value=3.5e-05 Score=76.28 Aligned_cols=82 Identities=16% Similarity=0.133 Sum_probs=60.7
Q ss_pred cCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCC-cceeccccccChhhHHHhhhcc
Q 011347 351 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFESLIHKL 429 (488)
Q Consensus 351 ~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~-lv~~~DI~~L~~~~Ie~l~~~~ 429 (488)
.+..+-+|||+|||+|++++.+-+.|- .-|+++|+|+.|.+.++.+-..++-.+. .++.+|.+++.. .
T Consensus 122 ~~~~g~~VlD~~aG~G~~~i~~a~~g~--~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~---------~ 190 (278)
T 3k6r_A 122 VAKPDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---------E 190 (278)
T ss_dssp HCCTTCEEEETTCTTTTTTHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---------C
T ss_pred hcCCCCEEEEecCcCcHHHHHHHHhcC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc---------c
Confidence 345678999999999999998877774 2378999999999999887654332222 245677776543 2
Q ss_pred CCccEEEecCCCCC
Q 011347 430 GSIDFVICQNSVPQ 443 (488)
Q Consensus 430 g~~DLVIGGpPCQ~ 443 (488)
+.+|.|+-++|+-.
T Consensus 191 ~~~D~Vi~~~p~~~ 204 (278)
T 3k6r_A 191 NIADRILMGYVVRT 204 (278)
T ss_dssp SCEEEEEECCCSSG
T ss_pred cCCCEEEECCCCcH
Confidence 57999999999654
No 32
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=97.69 E-value=6.1e-05 Score=73.03 Aligned_cols=80 Identities=16% Similarity=0.129 Sum_probs=61.2
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
..+-+|||+|||.|++++.+.+.|.. .|+++|+++.+.+..+.+....+..+ ..++.+|+.++.. .+.
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~---------~~~ 192 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---------ENI 192 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---------CSC
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc---------cCC
Confidence 45789999999999999999998864 47899999999988887665333222 2256688877653 257
Q ss_pred ccEEEecCCCCC
Q 011347 432 IDFVICQNSVPQ 443 (488)
Q Consensus 432 ~DLVIGGpPCQ~ 443 (488)
||+|+..+|+..
T Consensus 193 fD~Vi~~~p~~~ 204 (278)
T 2frn_A 193 ADRILMGYVVRT 204 (278)
T ss_dssp EEEEEECCCSSG
T ss_pred ccEEEECCchhH
Confidence 999999999653
No 33
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=97.62 E-value=7.4e-05 Score=85.67 Aligned_cols=47 Identities=6% Similarity=-0.014 Sum_probs=38.1
Q ss_pred cccCCCChhhHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcchhhh
Q 011347 297 YKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHL 345 (488)
Q Consensus 297 ~~~~ple~~E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti~~~l 345 (488)
.+.+.|++.|+.||+|||++|... -+.+++++.+||+.-+.....+.
T Consensus 945 ~~~R~lt~rE~arlQ~fPd~~~f~--g~~~~~~~qiGNaVp~~~~~~i~ 991 (1002)
T 3swr_A 945 EQHRVVSVRECARSQGFPDTYRLF--GNILDKHRQVGNAVPPPLAKAIG 991 (1002)
T ss_dssp SSSSBCCHHHHHHHTTCCTTCCCC--SSHHHHHHHHHHSCCHHHHHHHH
T ss_pred ccccCCCHHHHHHhCCCCcceEEc--CChHHHheeeeccCCHHHHHHHH
Confidence 356889999999999999999884 48889999999997665444443
No 34
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=97.52 E-value=0.00017 Score=62.41 Aligned_cols=83 Identities=16% Similarity=0.213 Sum_probs=58.3
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347 352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
++.+-+|||+.||.|.+...+.+.|.. ++++|+++.+.+..+.+....+. ...+..+|+.+.. ..+....+.
T Consensus 39 ~~~~~~vLD~GcG~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~----~~~~~~~~~ 110 (171)
T 1ws6_A 39 YPRRGRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFL----PEAKAQGER 110 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHH----HHHHHTTCC
T ss_pred ccCCCeEEEeCCCcCHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHH----HhhhccCCc
Confidence 345678999999999999999999864 88999999998888876544322 2234556665421 111111247
Q ss_pred ccEEEecCCCC
Q 011347 432 IDFVICQNSVP 442 (488)
Q Consensus 432 ~DLVIGGpPCQ 442 (488)
+|+|+..+|..
T Consensus 111 ~D~i~~~~~~~ 121 (171)
T 1ws6_A 111 FTVAFMAPPYA 121 (171)
T ss_dssp EEEEEECCCTT
T ss_pred eEEEEECCCCc
Confidence 99999988854
No 35
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=97.52 E-value=0.0001 Score=66.08 Aligned_cols=81 Identities=19% Similarity=0.354 Sum_probs=58.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+||||+||.|++++.+...|. ..|+++|+++.+.+..+.+....+.....++.+|+.++... + ..+.||
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~--~~~~fD 115 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSRGA--ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAA----G--TTSPVD 115 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHH----C--CSSCCS
T ss_pred CCCEEEEeCCCcCHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhh----c--cCCCcc
Confidence 467899999999999997777775 34889999999999888876544322233556776544211 0 126899
Q ss_pred EEEecCCCC
Q 011347 434 FVICQNSVP 442 (488)
Q Consensus 434 LVIGGpPCQ 442 (488)
+|+..+|..
T Consensus 116 ~i~~~~p~~ 124 (189)
T 3p9n_A 116 LVLADPPYN 124 (189)
T ss_dssp EEEECCCTT
T ss_pred EEEECCCCC
Confidence 999988854
No 36
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=97.48 E-value=0.00028 Score=71.94 Aligned_cols=86 Identities=16% Similarity=0.174 Sum_probs=59.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC--CCcceeccccccChhhHHHhhhccCC
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~--g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
.+-+|||||||.|++++.+-+.|. .-|++||+++.+.+..+.+....+.. ...++.+|+.+. +..+......
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~ga--~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~----l~~~~~~~~~ 285 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDY----FKYARRHHLT 285 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHH----HHHHHHTTCC
T ss_pred CCCeEEEEeeccCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHH----HHHHHHhCCC
Confidence 457899999999999999988875 35889999999999888876543322 223556776542 2222112247
Q ss_pred ccEEEecCCCCCcc
Q 011347 432 IDFVICQNSVPQIP 445 (488)
Q Consensus 432 ~DLVIGGpPCQ~FS 445 (488)
||+|+.-||+-+.|
T Consensus 286 fD~Ii~DPP~~~~~ 299 (385)
T 2b78_A 286 YDIIIIDPPSFARN 299 (385)
T ss_dssp EEEEEECCCCC---
T ss_pred ccEEEECCCCCCCC
Confidence 99999999986443
No 37
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=97.46 E-value=0.00024 Score=70.97 Aligned_cols=76 Identities=13% Similarity=0.163 Sum_probs=56.2
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccCC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
..+-+|||||||+|++++. .+ |- ..|+++|+++.+.+..+.+....+. ....++.+|+.++. +.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~-~~--~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-----------~~ 258 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK-NA--KKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-----------VK 258 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT-TS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-----------CC
T ss_pred CCCCEEEEccCccCHHHHh-cc-CC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-----------CC
Confidence 4567899999999999988 55 42 3588999999999998887654322 12335667776553 47
Q ss_pred ccEEEecCCCCC
Q 011347 432 IDFVICQNSVPQ 443 (488)
Q Consensus 432 ~DLVIGGpPCQ~ 443 (488)
+|+|+..||...
T Consensus 259 fD~Vi~dpP~~~ 270 (336)
T 2yx1_A 259 GNRVIMNLPKFA 270 (336)
T ss_dssp EEEEEECCTTTG
T ss_pred CcEEEECCcHhH
Confidence 999999988653
No 38
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=97.46 E-value=0.00026 Score=68.53 Aligned_cols=80 Identities=19% Similarity=0.132 Sum_probs=59.8
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347 352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
...+-+|||+|||.|++++.+-+.+-. .-|+++|+++.+.+..+.+....+..+..++.+|+.++ .. .+.
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~-~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~--------~~~ 186 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKP-KLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL--------KDV 186 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCC-SEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC--------TTC
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc--------cCC
Confidence 346778999999999999988876422 24789999999999888776543323334667888776 32 247
Q ss_pred ccEEEecCCC
Q 011347 432 IDFVICQNSV 441 (488)
Q Consensus 432 ~DLVIGGpPC 441 (488)
+|+|+-.+|.
T Consensus 187 ~D~Vi~d~p~ 196 (272)
T 3a27_A 187 ADRVIMGYVH 196 (272)
T ss_dssp EEEEEECCCS
T ss_pred ceEEEECCcc
Confidence 9999999986
No 39
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=97.45 E-value=0.00015 Score=69.92 Aligned_cols=88 Identities=16% Similarity=0.184 Sum_probs=57.8
Q ss_pred CCCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
.+.+|||++||.||.+..+..+ |- ..|+++|+++...+.++.+....+.....+..+|+.++... +....+.
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~~~~--~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~----~~~~~~~ 156 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMKNK--GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDY----LLKNEIF 156 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHH----HHHTTCC
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCC--CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchh----hhhcccc
Confidence 5678999999999999887763 31 24789999999988888766544332333455666544321 0011357
Q ss_pred ccEEEecCCCCCcccc
Q 011347 432 IDFVICQNSVPQIPNS 447 (488)
Q Consensus 432 ~DLVIGGpPCQ~FS~a 447 (488)
||+|+..+||.++...
T Consensus 157 fD~Vl~d~Pcs~~g~~ 172 (274)
T 3ajd_A 157 FDKILLDAPCSGNIIK 172 (274)
T ss_dssp EEEEEEEECCC-----
T ss_pred CCEEEEcCCCCCCccc
Confidence 9999999999987653
No 40
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=97.43 E-value=0.00018 Score=66.01 Aligned_cols=80 Identities=16% Similarity=0.073 Sum_probs=55.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC--CCCcceeccccccChhhHHHhhhccCC
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ--TGELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~--~g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
.+.+|||++||.|++++.+-..|. ..|+++|+++.+.+..+.+....+. ....++.+|+.++... + ..+.
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~----~--~~~~ 124 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQ----P--QNQP 124 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTS----C--CSSC
T ss_pred CCCeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHh----h--ccCC
Confidence 356899999999999998767775 3488999999999888876654322 1223455666543210 0 1256
Q ss_pred -ccEEEecCCC
Q 011347 432 -IDFVICQNSV 441 (488)
Q Consensus 432 -~DLVIGGpPC 441 (488)
||+|+..+|.
T Consensus 125 ~fD~I~~~~~~ 135 (201)
T 2ift_A 125 HFDVVFLDPPF 135 (201)
T ss_dssp CEEEEEECCCS
T ss_pred CCCEEEECCCC
Confidence 9999998883
No 41
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=97.41 E-value=0.00018 Score=74.18 Aligned_cols=77 Identities=16% Similarity=0.183 Sum_probs=56.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+-+|||+|||.|++++.+-+.|.. |++||+++.+.+..+.+....+... .+..+|+.++- .. ..+.||
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga~---V~avDis~~al~~a~~n~~~ng~~~-~~~~~D~~~~l----~~---~~~~fD 282 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGAY---ALAVDKDLEALGVLDQAALRLGLRV-DIRHGEALPTL----RG---LEGPFH 282 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHHTCCC-EEEESCHHHHH----HT---CCCCEE
T ss_pred CCCeEEEcccchhHHHHHHHHcCCe---EEEEECCHHHHHHHHHHHHHhCCCC-cEEEccHHHHH----HH---hcCCCC
Confidence 4789999999999999999998863 8899999999988887665433222 23345554321 11 124599
Q ss_pred EEEecCCC
Q 011347 434 FVICQNSV 441 (488)
Q Consensus 434 LVIGGpPC 441 (488)
+|+--|||
T Consensus 283 ~Ii~dpP~ 290 (393)
T 4dmg_A 283 HVLLDPPT 290 (393)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99999999
No 42
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=97.40 E-value=0.00022 Score=65.45 Aligned_cols=78 Identities=14% Similarity=0.090 Sum_probs=55.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+||||+||.|.+++.+-..|.. .|+++|+++.+.+..+.+....+.....++.+|+.++.. ...+.||
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~--~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~-------~~~~~fD 124 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA-------QKGTPHN 124 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS-------SCCCCEE
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHh-------hcCCCCC
Confidence 3568999999999999987777753 478999999999988877654332222345566544211 1125799
Q ss_pred EEEecCC
Q 011347 434 FVICQNS 440 (488)
Q Consensus 434 LVIGGpP 440 (488)
+|+..+|
T Consensus 125 ~V~~~~p 131 (202)
T 2fpo_A 125 IVFVDPP 131 (202)
T ss_dssp EEEECCS
T ss_pred EEEECCC
Confidence 9999888
No 43
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=97.34 E-value=0.00042 Score=70.32 Aligned_cols=86 Identities=20% Similarity=0.138 Sum_probs=60.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+-+|||||||.|++++.+.+.|. .-|+++|+++.+.+..+.+....+.. ...++.+|+.++.. .+....+.+
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~--~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~----~~~~~~~~f 290 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEME----KLQKKGEKF 290 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH----HHHHTTCCE
T ss_pred CCCeEEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHH----HHHhhCCCC
Confidence 567899999999999999988875 35889999999999888876543221 22245566654321 121123579
Q ss_pred cEEEecCCCCCcc
Q 011347 433 DFVICQNSVPQIP 445 (488)
Q Consensus 433 DLVIGGpPCQ~FS 445 (488)
|+|+.-||+-..+
T Consensus 291 D~Vi~dpP~~~~~ 303 (396)
T 2as0_A 291 DIVVLDPPAFVQH 303 (396)
T ss_dssp EEEEECCCCSCSS
T ss_pred CEEEECCCCCCCC
Confidence 9999999975543
No 44
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=97.26 E-value=0.00055 Score=61.75 Aligned_cols=74 Identities=19% Similarity=0.241 Sum_probs=55.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||++||.|++...+.+.|. ..|+++|+++.+.+..+.+.. ...++.+|+.++. +.+|
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~-----------~~~D 112 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS-----------GKYD 112 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC-----------CCEE
T ss_pred CCCEEEEEeCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC-----------CCee
Confidence 457899999999999999988874 348899999999888776432 2335678887653 4799
Q ss_pred EEEecCCCCCcc
Q 011347 434 FVICQNSVPQIP 445 (488)
Q Consensus 434 LVIGGpPCQ~FS 445 (488)
+|+..+|-..++
T Consensus 113 ~v~~~~p~~~~~ 124 (200)
T 1ne2_A 113 TWIMNPPFGSVV 124 (200)
T ss_dssp EEEECCCC----
T ss_pred EEEECCCchhcc
Confidence 999998866544
No 45
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=97.22 E-value=0.0008 Score=63.78 Aligned_cols=83 Identities=16% Similarity=0.121 Sum_probs=59.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+.+|||+.||.|++.+.+.+.+-. .|+++|+++.+.+..+.+....+..+ ..++.+|+.++... + ..+.|
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~-~-----~~~~f 120 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL-I-----PKERA 120 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT-S-----CTTCE
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh-h-----ccCCc
Confidence 4678999999999999999888742 57899999999888887665433222 23566788765421 1 12589
Q ss_pred cEEEecCCCCCc
Q 011347 433 DFVICQNSVPQI 444 (488)
Q Consensus 433 DLVIGGpPCQ~F 444 (488)
|+|+.-||+-..
T Consensus 121 D~Ii~npPy~~~ 132 (259)
T 3lpm_A 121 DIVTCNPPYFAT 132 (259)
T ss_dssp EEEEECCCC---
T ss_pred cEEEECCCCCCC
Confidence 999999998766
No 46
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=97.20 E-value=0.00067 Score=68.70 Aligned_cols=85 Identities=20% Similarity=0.129 Sum_probs=59.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+-+|||+|||.|++++.+.+.+ .-|+++|+++.+.+..+.+....+..+..++.+|+.++.. .+....+.+|
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~----~~~~~~~~fD 281 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLR----RLEKEGERFD 281 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHH----HHHHTTCCEE
T ss_pred CCCeEEEeeeccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHH----HHHhcCCCee
Confidence 46789999999999999888763 4588999999999888876654332223355667654321 1211235799
Q ss_pred EEEecCCCCCcc
Q 011347 434 FVICQNSVPQIP 445 (488)
Q Consensus 434 LVIGGpPCQ~FS 445 (488)
+|+.-||+-+.|
T Consensus 282 ~Ii~dpP~~~~~ 293 (382)
T 1wxx_A 282 LVVLDPPAFAKG 293 (382)
T ss_dssp EEEECCCCSCCS
T ss_pred EEEECCCCCCCC
Confidence 999999985544
No 47
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=97.19 E-value=0.001 Score=60.99 Aligned_cols=83 Identities=14% Similarity=0.152 Sum_probs=58.7
Q ss_pred CCCCCcccccCCC-CChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhcc
Q 011347 352 FPGGLTMLSVFSG-IGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 429 (488)
Q Consensus 352 fp~~itVLDLFSG-iGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~ 429 (488)
.+.+.+|||+.|| .|.+.+.+.+. +. .|+++|+++.+.+..+.+....+. ...++.+|+..+.. +. .
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~--~~-----~ 121 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFFNC---KVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKG--VV-----E 121 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTT--TC-----C
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhh--cc-----c
Confidence 4567899999999 99999998887 54 378999999998888876554332 23356677654332 11 1
Q ss_pred CCccEEEecCCCCCcc
Q 011347 430 GSIDFVICQNSVPQIP 445 (488)
Q Consensus 430 g~~DLVIGGpPCQ~FS 445 (488)
+.||+|+.-||+-...
T Consensus 122 ~~fD~I~~npp~~~~~ 137 (230)
T 3evz_A 122 GTFDVIFSAPPYYDKP 137 (230)
T ss_dssp SCEEEEEECCCCC---
T ss_pred CceeEEEECCCCcCCc
Confidence 5799999999986654
No 48
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=97.17 E-value=0.00054 Score=69.16 Aligned_cols=84 Identities=10% Similarity=0.060 Sum_probs=58.5
Q ss_pred CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhc------
Q 011347 355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK------ 428 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~------ 428 (488)
+-+|||||||+|++++.+.+.+ .-|+++|+++.+.+..+.+....+.....++.+|+.++.. .+...
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~----~~~~~~~~~~l 286 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQ----AMNGVREFNRL 286 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHH----HHSSCCCCTTG
T ss_pred CCEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHH----HHhhccccccc
Confidence 4679999999999999988754 3478999999999988887654332233355677654321 11110
Q ss_pred ------cCCccEEEecCCCCCcc
Q 011347 429 ------LGSIDFVICQNSVPQIP 445 (488)
Q Consensus 429 ------~g~~DLVIGGpPCQ~FS 445 (488)
.+.||+|+--||..+..
T Consensus 287 ~~~~~~~~~fD~Vv~dPPr~g~~ 309 (369)
T 3bt7_A 287 QGIDLKSYQCETIFVDPPRSGLD 309 (369)
T ss_dssp GGSCGGGCCEEEEEECCCTTCCC
T ss_pred cccccccCCCCEEEECcCccccH
Confidence 03799999999987543
No 49
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=97.07 E-value=0.001 Score=73.28 Aligned_cols=83 Identities=19% Similarity=0.174 Sum_probs=59.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC--CCcceeccccccChhhHHHhhhccCC
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~--g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
.+-+|||||||.|++++.+-..|.. -|++||+++.+.+..+.+...++.. ...++.+|+.+.- . ...+.
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~--~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l----~---~~~~~ 609 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGAR--STTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWL----R---EANEQ 609 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHH----H---HCCCC
T ss_pred CCCcEEEeeechhHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHH----H---hcCCC
Confidence 5678999999999999998888863 4889999999999888876543322 1224556665421 1 12257
Q ss_pred ccEEEecCCCCCcc
Q 011347 432 IDFVICQNSVPQIP 445 (488)
Q Consensus 432 ~DLVIGGpPCQ~FS 445 (488)
||+|+--|||-+-|
T Consensus 610 fD~Ii~DPP~f~~~ 623 (703)
T 3v97_A 610 FDLIFIDPPTFSNS 623 (703)
T ss_dssp EEEEEECCCSBC--
T ss_pred ccEEEECCccccCC
Confidence 99999999984333
No 50
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=97.06 E-value=0.0012 Score=65.42 Aligned_cols=86 Identities=10% Similarity=0.021 Sum_probs=61.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||+.||.||.+..+.+..-.-..|+++|+++...+..+.+....+.....+..+|+.++.. ..+.||
T Consensus 118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~--------~~~~fD 189 (315)
T 1ixk_A 118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE--------LNVEFD 189 (315)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG--------GCCCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc--------ccccCC
Confidence 467899999999999988876421112478999999998888876654333233455677766542 125799
Q ss_pred EEEecCCCCCcccc
Q 011347 434 FVICQNSVPQIPNS 447 (488)
Q Consensus 434 LVIGGpPCQ~FS~a 447 (488)
+|+.-+||.+....
T Consensus 190 ~Il~d~Pcsg~g~~ 203 (315)
T 1ixk_A 190 KILLDAPCTGSGTI 203 (315)
T ss_dssp EEEEECCTTSTTTC
T ss_pred EEEEeCCCCCcccc
Confidence 99999999887653
No 51
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=97.01 E-value=0.0016 Score=57.18 Aligned_cols=81 Identities=19% Similarity=0.226 Sum_probs=55.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+.+|||+.||.|++...+.+.|. ..|+++|+++.+.+..+.+....+.. ...++.+|+.+... .+....+.|
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~~~f 117 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALE----QFYEEKLQF 117 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHH----HHHHTTCCE
T ss_pred CCCCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHH----HHHhcCCCC
Confidence 456899999999999998777764 34789999999988887765433211 12245567654321 111113679
Q ss_pred cEEEecCC
Q 011347 433 DFVICQNS 440 (488)
Q Consensus 433 DLVIGGpP 440 (488)
|+|+..+|
T Consensus 118 D~i~~~~~ 125 (187)
T 2fhp_A 118 DLVLLDPP 125 (187)
T ss_dssp EEEEECCC
T ss_pred CEEEECCC
Confidence 99998877
No 52
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=97.01 E-value=0.0013 Score=68.28 Aligned_cols=78 Identities=19% Similarity=0.308 Sum_probs=59.0
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
..+-+|||||||.|.+++.|.+.+. -|+++|+++.+.+..+.+....+.. ..++.+|+.++..+ .+
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~~~---~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~----------~f 354 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKRGF---NVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVK----------GF 354 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCT----------TC
T ss_pred CCCCEEEEeeccchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCcc----------CC
Confidence 4567899999999999999988774 4789999999998888766443322 34567887765421 69
Q ss_pred cEEEecCCCCCc
Q 011347 433 DFVICQNSVPQI 444 (488)
Q Consensus 433 DLVIGGpPCQ~F 444 (488)
|+|+--||..+.
T Consensus 355 D~Vv~dPPr~g~ 366 (425)
T 2jjq_A 355 DTVIVDPPRAGL 366 (425)
T ss_dssp SEEEECCCTTCS
T ss_pred CEEEEcCCccch
Confidence 999998886543
No 53
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=97.01 E-value=0.0011 Score=59.86 Aligned_cols=85 Identities=19% Similarity=0.198 Sum_probs=60.6
Q ss_pred cccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhh
Q 011347 347 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI 426 (488)
Q Consensus 347 vLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~ 426 (488)
.|..+.+.+.+|||+.||.|.+...+.+.|. ..++++|+++.+.+..+.+....+..+..+..+|+.+..
T Consensus 53 ~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-------- 122 (205)
T 3grz_A 53 GIERAMVKPLTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV-------- 122 (205)
T ss_dssp HHHHHCSSCCEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC--------
T ss_pred HHHHhccCCCEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC--------
Confidence 3344445678999999999999999998875 347899999998888777654433222335567765432
Q ss_pred hccCCccEEEecCCCCC
Q 011347 427 HKLGSIDFVICQNSVPQ 443 (488)
Q Consensus 427 ~~~g~~DLVIGGpPCQ~ 443 (488)
.+.+|+|+..+|.+.
T Consensus 123 --~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 123 --DGKFDLIVANILAEI 137 (205)
T ss_dssp --CSCEEEEEEESCHHH
T ss_pred --CCCceEEEECCcHHH
Confidence 157999999877654
No 54
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=96.98 E-value=0.0015 Score=62.40 Aligned_cols=80 Identities=9% Similarity=0.061 Sum_probs=58.0
Q ss_pred CCCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
.+.+|||+.||.|.+...+... +. .++++|+++.+.+..+.+....+.....+..+|+.+.. ..+.
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~~~~---~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~---------~~~~ 176 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASERPDC---EIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL---------AGQQ 176 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTS---EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG---------TTCC
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhc---------ccCC
Confidence 4578999999999999988754 33 47899999999988887654433222334556765421 1257
Q ss_pred ccEEEecCCCCCcc
Q 011347 432 IDFVICQNSVPQIP 445 (488)
Q Consensus 432 ~DLVIGGpPCQ~FS 445 (488)
||+|+.-|||.+.+
T Consensus 177 fD~Iv~npPy~~~~ 190 (276)
T 2b3t_A 177 FAMIVSNPPYIDEQ 190 (276)
T ss_dssp EEEEEECCCCBCTT
T ss_pred ccEEEECCCCCCcc
Confidence 99999999998764
No 55
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=96.97 E-value=0.0016 Score=57.70 Aligned_cols=84 Identities=14% Similarity=0.140 Sum_probs=56.7
Q ss_pred ccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhh
Q 011347 348 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH 427 (488)
Q Consensus 348 LK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~ 427 (488)
++...+.+.+|||+.||.|.++..|.+.|.+ |+++|+++.+.+..+.+....+.....++.+|+..+.. +.
T Consensus 16 l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~---v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~-----~~- 86 (185)
T 3mti_A 16 LAEVLDDESIVVDATMGNGNDTAFLAGLSKK---VYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDH-----YV- 86 (185)
T ss_dssp HHTTCCTTCEEEESCCTTSHHHHHHHTTSSE---EEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGG-----TC-
T ss_pred HHHhCCCCCEEEEEcCCCCHHHHHHHHhCCE---EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHh-----hc-
Confidence 3445567789999999999999999888653 78999999998888776544332222234455544321 11
Q ss_pred ccCCccEEEecCCC
Q 011347 428 KLGSIDFVICQNSV 441 (488)
Q Consensus 428 ~~g~~DLVIGGpPC 441 (488)
.+.||+|+..++.
T Consensus 87 -~~~fD~v~~~~~~ 99 (185)
T 3mti_A 87 -REPIRAAIFNLGY 99 (185)
T ss_dssp -CSCEEEEEEEEC-
T ss_pred -cCCcCEEEEeCCC
Confidence 2579999876443
No 56
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=96.97 E-value=0.0033 Score=62.55 Aligned_cols=81 Identities=15% Similarity=0.109 Sum_probs=58.1
Q ss_pred CCCCcccccCCCCChhHHHHHHcC-CeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aG-i~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
..+.+|||+|||.|++.+-+-..+ -. ..++++|+|+.+.+..+.+....+.....+..+|+.++... .+.
T Consensus 202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~-~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~--------~~~ 272 (354)
T 3tma_A 202 RPGMRVLDPFTGSGTIALEAASTLGPT-SPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRF--------FPE 272 (354)
T ss_dssp CTTCCEEESSCTTSHHHHHHHHHHCTT-SCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGT--------CCC
T ss_pred CCCCEEEeCCCCcCHHHHHHHHhhCCC-ceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccc--------cCC
Confidence 346789999999999988776643 11 23689999999999888876654332233566788765421 246
Q ss_pred ccEEEecCCCC
Q 011347 432 IDFVICQNSVP 442 (488)
Q Consensus 432 ~DLVIGGpPCQ 442 (488)
+|+|+.-|||-
T Consensus 273 ~D~Ii~npPyg 283 (354)
T 3tma_A 273 VDRILANPPHG 283 (354)
T ss_dssp CSEEEECCCSC
T ss_pred CCEEEECCCCc
Confidence 89999999983
No 57
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=96.96 E-value=0.0016 Score=64.85 Aligned_cols=88 Identities=10% Similarity=0.154 Sum_probs=60.9
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+-+|||++||.||.++.+-.+ +=. ..|+++|+++...+.++.+....+.....++.+|..++.... ..++.|
T Consensus 102 ~g~~VLDlcaG~G~kt~~la~~~~~~-g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~-----~~~~~f 175 (309)
T 2b9e_A 102 PGSHVIDACAAPGNKTSHLAALLKNQ-GKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSD-----PRYHEV 175 (309)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTC-----GGGTTE
T ss_pred CCCEEEEeCCChhHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccc-----cccCCC
Confidence 4678999999999999887653 211 247899999999998888765443333345667887765321 113579
Q ss_pred cEEEecCCCCCcccc
Q 011347 433 DFVICQNSVPQIPNS 447 (488)
Q Consensus 433 DLVIGGpPCQ~FS~a 447 (488)
|.|+--+||.++...
T Consensus 176 D~Vl~D~PcSg~G~~ 190 (309)
T 2b9e_A 176 HYILLDPSCSGSGMP 190 (309)
T ss_dssp EEEEECCCCCC----
T ss_pred CEEEEcCCcCCCCCC
Confidence 999999999988754
No 58
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=96.94 E-value=0.0013 Score=57.81 Aligned_cols=79 Identities=15% Similarity=0.246 Sum_probs=54.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+-+|||+.||.|.+...+.+.|. ..|+++|+++.+.+..+.+....+.. ...++.+|+.+. +. ...+.|
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~---~~~~~f 101 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA----ID---CLTGRF 101 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH----HH---HBCSCE
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHh----HH---hhcCCC
Confidence 456899999999999998888874 34789999999988888765433211 122344555432 11 112569
Q ss_pred cEEEecCCC
Q 011347 433 DFVICQNSV 441 (488)
Q Consensus 433 DLVIGGpPC 441 (488)
|+|+..+|.
T Consensus 102 D~i~~~~~~ 110 (177)
T 2esr_A 102 DLVFLDPPY 110 (177)
T ss_dssp EEEEECCSS
T ss_pred CEEEECCCC
Confidence 999988774
No 59
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=96.94 E-value=0.00052 Score=61.22 Aligned_cols=87 Identities=14% Similarity=0.043 Sum_probs=46.8
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
..+.+|||+.||.|.+...+.+.+-. ..++++|+++.+.+..+.+....+. ...+..+|+.+ .+.......+.|
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~----~~~~~~~~~~~f 102 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPG-VSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIE----WLIERAERGRPW 102 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTT-EEEEEEECC--------------------CCHHHHHH----HHHHHHHTTCCB
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHh----hhhhhhhccCcc
Confidence 46789999999999999999888422 2478999999988777654332211 12234455543 111111123789
Q ss_pred cEEEecCCCCCcc
Q 011347 433 DFVICQNSVPQIP 445 (488)
Q Consensus 433 DLVIGGpPCQ~FS 445 (488)
|+|+..+|+-...
T Consensus 103 D~i~~npp~~~~~ 115 (215)
T 4dzr_A 103 HAIVSNPPYIPTG 115 (215)
T ss_dssp SEEEECCCCCC--
T ss_pred cEEEECCCCCCCc
Confidence 9999999986554
No 60
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=96.94 E-value=0.002 Score=60.31 Aligned_cols=86 Identities=13% Similarity=0.030 Sum_probs=55.7
Q ss_pred CCCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhc-c
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK-L 429 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~-~ 429 (488)
.+.+|||+.||.|++...+... +. .|+++|+++.+.+..+.+....+..+ ..++.+|+.+.-.+.+. .. .
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---~~~~ 138 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGW---YFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALK---EESE 138 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTST---TCCS
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhh---cccC
Confidence 5678999999999988776554 43 37899999999888887655433222 23566776652111111 00 1
Q ss_pred CCccEEEecCCCCCcc
Q 011347 430 GSIDFVICQNSVPQIP 445 (488)
Q Consensus 430 g~~DLVIGGpPCQ~FS 445 (488)
+.||+|+..||+-...
T Consensus 139 ~~fD~i~~npp~~~~~ 154 (254)
T 2h00_A 139 IIYDFCMCNPPFFANQ 154 (254)
T ss_dssp CCBSEEEECCCCC---
T ss_pred CcccEEEECCCCccCc
Confidence 4799999999987554
No 61
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=96.90 E-value=0.0015 Score=76.91 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=40.1
Q ss_pred CCCCccccccccccchh----hHHHHhhhh----ccCCceeeecccc-Ccccccccccc
Q 011347 159 AQPPYFFYGNVVDVSID----CWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLH 208 (488)
Q Consensus 159 ~~ppfF~fENV~~~~~~----~w~~Is~fL----~~i~Pe~Vds~~f-sAa~R~RgY~h 208 (488)
.+|.||++|||..+-.. .+..|.+.| |.+...++||..| .||+|.|.|+=
T Consensus 971 ~rPk~fv~ENV~glls~~~g~~~~~il~~L~~lGY~v~~~vLnA~dyGVPQ~R~Rvfiv 1029 (1330)
T 3av4_A 971 YRPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIIL 1029 (1330)
T ss_dssp HCCSEEEEEEEGGGGTTTTTHHHHHHHHHHHHHTCEEEEEEEEGGGGSCSBCCEEEEEE
T ss_pred hcCcEEEEeccHHHhccCccHHHHHHHHHHHhcCCeeeEEEecHHHcCCCccccEEEEE
Confidence 57999999999988532 455565554 6678899999999 99999999963
No 62
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=96.88 E-value=0.0023 Score=62.44 Aligned_cols=83 Identities=17% Similarity=0.223 Sum_probs=59.8
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCC
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
.+.+|||+.||.|.+.+.+... +. .|+++|+++.+.+..+.+....+..+ ..++.+|+.+.-. ..++.
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~~~~---~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~-------~~f~~ 192 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKFSDA---IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK-------EKFAS 192 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSC---EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG-------GGTTT
T ss_pred CCCEEEEEeCchhHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc-------cccCC
Confidence 3468999999999999999877 43 47899999999998887665433222 3356677765211 12344
Q ss_pred ccEEEecCCCCCccc
Q 011347 432 IDFVICQNSVPQIPN 446 (488)
Q Consensus 432 ~DLVIGGpPCQ~FS~ 446 (488)
+|+|+.-|||-+.+.
T Consensus 193 ~D~IvsnPPyi~~~~ 207 (284)
T 1nv8_A 193 IEMILSNPPYVKSSA 207 (284)
T ss_dssp CCEEEECCCCBCGGG
T ss_pred CCEEEEcCCCCCccc
Confidence 499999999987764
No 63
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=96.86 E-value=0.0013 Score=68.20 Aligned_cols=80 Identities=9% Similarity=0.015 Sum_probs=54.4
Q ss_pred CCCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC--CcceeccccccChhhHHHhhh-c
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIH-K 428 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g--~lv~~~DI~~L~~~~Ie~l~~-~ 428 (488)
.+.+|||||||.|++++-+-.. |. .-|++||+++.+.+.++.+-..++-.+ ..++.+|+.++ +. .
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga--~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~--------l~~~ 121 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCV--EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFF--------LRKE 121 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCE--EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH--------HHSC
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHH--------HHHh
Confidence 4678999999999998865552 42 458899999999999998765432211 22344554332 22 2
Q ss_pred -cCCccEEEecCCCCC
Q 011347 429 -LGSIDFVICQNSVPQ 443 (488)
Q Consensus 429 -~g~~DLVIGGpPCQ~ 443 (488)
.+.||+|+--|||..
T Consensus 122 ~~~~fD~V~lDP~g~~ 137 (392)
T 3axs_A 122 WGFGFDYVDLDPFGTP 137 (392)
T ss_dssp CSSCEEEEEECCSSCC
T ss_pred hCCCCcEEEECCCcCH
Confidence 247999999887753
No 64
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=96.86 E-value=0.0034 Score=63.46 Aligned_cols=80 Identities=19% Similarity=0.130 Sum_probs=58.7
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccCC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
+.+.+|||++||.|++.+.+...|.. ..++++|+|+.+.+..+.+....+. ....+..+|+.++... .+.
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~~-~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~--------~~~ 286 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRYS-GEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQY--------VDS 286 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTCC-SCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGT--------CSC
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcc--------cCC
Confidence 45678999999999999998888752 1378999999999888877654332 1223556777765421 257
Q ss_pred ccEEEecCCC
Q 011347 432 IDFVICQNSV 441 (488)
Q Consensus 432 ~DLVIGGpPC 441 (488)
+|+|+.-||.
T Consensus 287 fD~Ii~npPy 296 (373)
T 3tm4_A 287 VDFAISNLPY 296 (373)
T ss_dssp EEEEEEECCC
T ss_pred cCEEEECCCC
Confidence 9999998885
No 65
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=96.83 E-value=0.002 Score=60.62 Aligned_cols=85 Identities=13% Similarity=0.114 Sum_probs=56.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhc--------CCCCCcceeccccccChhhHHHh
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS--------GQTGELVQIEDIQALTTKKFESL 425 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~--------n~~g~lv~~~DI~~L~~~~Ie~l 425 (488)
.+.+|||++||.|++.+.+.+.+-. ..+++||+++.+....+.+.... +.....++.+|+.+.-...+
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~--- 124 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPE-DLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFF--- 124 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTT-SEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTS---
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCC-CCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhc---
Confidence 5678999999999999999887632 24789999999887776654321 22233356678765211111
Q ss_pred hhccCCccEEEecCCCCCc
Q 011347 426 IHKLGSIDFVICQNSVPQI 444 (488)
Q Consensus 426 ~~~~g~~DLVIGGpPCQ~F 444 (488)
..+.+|.|+--.|...+
T Consensus 125 --~~~~~d~v~~~~p~p~~ 141 (246)
T 2vdv_E 125 --EKGQLSKMFFCFPDPHF 141 (246)
T ss_dssp --CTTCEEEEEEESCCCC-
T ss_pred --cccccCEEEEECCCccc
Confidence 12578988877776443
No 66
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=96.75 E-value=0.0016 Score=68.73 Aligned_cols=86 Identities=17% Similarity=0.126 Sum_probs=59.6
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+.+|||++||.||.++.+-.+ +=. -.|+++|+++...+.++.+....+.....+..+|..++. .. ..+.|
T Consensus 105 ~g~~VLDlcaGpGgkt~~lA~~~~~~-g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~-----~~--~~~~F 176 (456)
T 3m4x_A 105 PGEKVLDLCAAPGGKSTQLAAQMKGK-GLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELV-----PH--FSGFF 176 (456)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTC-SEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHH-----HH--HTTCE
T ss_pred CCCEEEEECCCcCHHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh-----hh--ccccC
Confidence 4679999999999999887654 211 137899999999998887765443322233445554432 11 12579
Q ss_pred cEEEecCCCCCcccc
Q 011347 433 DFVICQNSVPQIPNS 447 (488)
Q Consensus 433 DLVIGGpPCQ~FS~a 447 (488)
|+|+--+||.+....
T Consensus 177 D~Il~DaPCSg~G~~ 191 (456)
T 3m4x_A 177 DRIVVDAPCSGEGMF 191 (456)
T ss_dssp EEEEEECCCCCGGGT
T ss_pred CEEEECCCCCCcccc
Confidence 999999999987753
No 67
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=96.69 E-value=0.0034 Score=64.86 Aligned_cols=85 Identities=15% Similarity=0.115 Sum_probs=60.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+-+||||+||.|.+++.|.+.+. -|+++|+++.+.+..+.+....+.....++.+|+.+.-.. + ....+.||
T Consensus 286 ~~~~VLDlgcG~G~~~~~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~-~---~~~~~~fD 358 (433)
T 1uwv_A 286 PEDRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK-Q---PWAKNGFD 358 (433)
T ss_dssp TTCEEEEESCTTTTTHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSS-S---GGGTTCCS
T ss_pred CCCEEEECCCCCCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhh-h---hhhcCCCC
Confidence 456899999999999999988764 4789999999998888766443322344667888763221 0 00124799
Q ss_pred EEEecCCCCCcc
Q 011347 434 FVICQNSVPQIP 445 (488)
Q Consensus 434 LVIGGpPCQ~FS 445 (488)
+|+--||..+..
T Consensus 359 ~Vv~dPPr~g~~ 370 (433)
T 1uwv_A 359 KVLLDPARAGAA 370 (433)
T ss_dssp EEEECCCTTCCH
T ss_pred EEEECCCCccHH
Confidence 999999987654
No 68
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=96.69 E-value=0.0039 Score=54.47 Aligned_cols=77 Identities=10% Similarity=0.023 Sum_probs=55.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC--CcceeccccccChhhHHHhhhccCC
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g--~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
.+.+|||+.||.|.+...+.+.|. .++++|+++.+....+......+... ..+..+|+.+... .+.
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~---------~~~ 119 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK---------DRK 119 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT---------TSC
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc---------cCC
Confidence 567899999999999999888864 37899999999888877654432222 3345567654321 257
Q ss_pred ccEEEecCCCC
Q 011347 432 IDFVICQNSVP 442 (488)
Q Consensus 432 ~DLVIGGpPCQ 442 (488)
+|+|+..+|-.
T Consensus 120 ~D~v~~~~~~~ 130 (194)
T 1dus_A 120 YNKIITNPPIR 130 (194)
T ss_dssp EEEEEECCCST
T ss_pred ceEEEECCCcc
Confidence 99999876643
No 69
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=96.64 E-value=0.0024 Score=62.75 Aligned_cols=100 Identities=16% Similarity=0.073 Sum_probs=61.8
Q ss_pred HhhhhhcccC--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCC
Q 011347 330 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE 407 (488)
Q Consensus 330 k~Lgnsfqvd--ti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~ 407 (488)
|.+|..|-++ .+...+..+. ...+-+|||+.||.|.++..|.+.|- -|+++|+|+......+......+....
T Consensus 18 k~~Gq~fl~~~~i~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~~~---~v~~vDi~~~~~~~a~~~~~~~~~~~v 92 (299)
T 2h1r_A 18 YFQGQHLLKNPGILDKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPLAK---KVITIDIDSRMISEVKKRCLYEGYNNL 92 (299)
T ss_dssp -----CEECCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTTSS---EEEEECSCHHHHHHHHHHHHHTTCCCE
T ss_pred hccccceecCHHHHHHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCCce
Confidence 4556666332 2333333332 23567899999999999999988874 378999999998888775533222233
Q ss_pred cceeccccccChhhHHHhhhccCCccEEEecCCCCCc
Q 011347 408 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQI 444 (488)
Q Consensus 408 lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ~F 444 (488)
.++.+|+.++. ++.+|+|++-+|++..
T Consensus 93 ~~~~~D~~~~~----------~~~~D~Vv~n~py~~~ 119 (299)
T 2h1r_A 93 EVYEGDAIKTV----------FPKFDVCTANIPYKIS 119 (299)
T ss_dssp EC----CCSSC----------CCCCSEEEEECCGGGH
T ss_pred EEEECchhhCC----------cccCCEEEEcCCcccc
Confidence 35667877654 2468999999997744
No 70
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=96.63 E-value=0.0045 Score=56.03 Aligned_cols=77 Identities=22% Similarity=0.326 Sum_probs=56.4
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347 352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
.+.+.+|||+-||.|.+...+.+.|. .++++|+++...+..+......+ ....+..+|+.++.. ..+.
T Consensus 36 ~~~~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~--------~~~~ 103 (227)
T 1ve3_A 36 MKKRGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSF--------EDKT 103 (227)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCS--------CTTC
T ss_pred cCCCCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCCC--------CCCc
Confidence 34478999999999999999999986 47899999998887776554322 233456678876541 1147
Q ss_pred ccEEEecCC
Q 011347 432 IDFVICQNS 440 (488)
Q Consensus 432 ~DLVIGGpP 440 (488)
+|+|+..++
T Consensus 104 ~D~v~~~~~ 112 (227)
T 1ve3_A 104 FDYVIFIDS 112 (227)
T ss_dssp EEEEEEESC
T ss_pred EEEEEEcCc
Confidence 999987766
No 71
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=96.60 E-value=0.0029 Score=66.90 Aligned_cols=85 Identities=19% Similarity=0.048 Sum_probs=60.6
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+.+||||+||.||.+..+-.+ +=. -.|+++|+++...+.++.+....+.. ..+..+|..++. .. ..+.|
T Consensus 101 ~g~~VLDlgaGpG~kt~~LA~~~~~~-g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~-----~~--~~~~F 171 (464)
T 3m6w_A 101 PGERVLDLAAAPGGKTTHLAARMGGK-GLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALA-----EA--FGTYF 171 (464)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTC-SEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHH-----HH--HCSCE
T ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhh-----hh--ccccC
Confidence 5689999999999999888754 211 13789999999999988876554333 334456655432 11 12579
Q ss_pred cEEEecCCCCCcccc
Q 011347 433 DFVICQNSVPQIPNS 447 (488)
Q Consensus 433 DLVIGGpPCQ~FS~a 447 (488)
|+|+--+||.+....
T Consensus 172 D~Il~D~PcSg~G~~ 186 (464)
T 3m6w_A 172 HRVLLDAPCSGEGMF 186 (464)
T ss_dssp EEEEEECCCCCGGGT
T ss_pred CEEEECCCcCCcccc
Confidence 999999999987754
No 72
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=96.58 E-value=0.0034 Score=65.46 Aligned_cols=79 Identities=11% Similarity=0.078 Sum_probs=58.0
Q ss_pred CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhc--CCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS--GQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~--n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
+-+||||+||.|+.++.|-+.|. -|++||+|+.+.+..+.+.... +.....++.+|+.+.-.. ++ .+.|
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g~---~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~-~~-----~~~f 164 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKAS---QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPL-IK-----TFHP 164 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTCS---EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHH-HH-----HHCC
T ss_pred CCEEEEeCCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhh-cc-----CCCc
Confidence 68899999999999999998885 3789999999999998877543 222233566888764211 11 1379
Q ss_pred cEEEecCCCC
Q 011347 433 DFVICQNSVP 442 (488)
Q Consensus 433 DLVIGGpPCQ 442 (488)
|+|+--||=.
T Consensus 165 DvV~lDPPrr 174 (410)
T 3ll7_A 165 DYIYVDPARR 174 (410)
T ss_dssp SEEEECCEEC
T ss_pred eEEEECCCCc
Confidence 9999888744
No 73
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=96.57 E-value=0.0074 Score=54.43 Aligned_cols=81 Identities=17% Similarity=0.085 Sum_probs=58.9
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
..+.+|||+.||.|.+...|.+.|. .|+++|+++...+..+.+....+.....+..+|+.+.... .+.|
T Consensus 76 ~~~~~vLdiG~G~G~~~~~la~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--------~~~~ 144 (210)
T 3lbf_A 76 TPQSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQA--------RAPF 144 (210)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG--------GCCE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCcc--------CCCc
Confidence 3567899999999999999988874 3789999999988888766543333333566777654321 2579
Q ss_pred cEEEecCCCCCc
Q 011347 433 DFVICQNSVPQI 444 (488)
Q Consensus 433 DLVIGGpPCQ~F 444 (488)
|+|+....+..+
T Consensus 145 D~i~~~~~~~~~ 156 (210)
T 3lbf_A 145 DAIIVTAAPPEI 156 (210)
T ss_dssp EEEEESSBCSSC
T ss_pred cEEEEccchhhh
Confidence 999987665544
No 74
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=96.56 E-value=0.0035 Score=66.16 Aligned_cols=86 Identities=9% Similarity=0.062 Sum_probs=60.9
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+.+|||++||.||.+..+-.+ +-. -.|+++|+++...+.++.+....+.....+..+|..++... ..+.|
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~-g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~-------~~~~f 188 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNE-GAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAA-------VPEMF 188 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTC-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHH-------STTCE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhh-------ccccC
Confidence 5679999999999999887764 211 24789999999999888766543322333455676654210 12579
Q ss_pred cEEEecCCCCCcccc
Q 011347 433 DFVICQNSVPQIPNS 447 (488)
Q Consensus 433 DLVIGGpPCQ~FS~a 447 (488)
|+|+--+||.+....
T Consensus 189 D~Il~D~PcSg~G~~ 203 (479)
T 2frx_A 189 DAILLDAPCSGEGVV 203 (479)
T ss_dssp EEEEEECCCCCGGGG
T ss_pred CEEEECCCcCCcccc
Confidence 999999999987653
No 75
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=96.56 E-value=0.0025 Score=65.31 Aligned_cols=79 Identities=15% Similarity=0.106 Sum_probs=54.0
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhc---------------CCCCCcceecccccc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS---------------GQTGELVQIEDIQAL 417 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~---------------n~~g~lv~~~DI~~L 417 (488)
.+.+|||||||.|++++.+-.. |- . -|+++|+++.+.+..+.+.... +.....++.+|+.++
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~-~-~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~ 124 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPA-E-EVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRL 124 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSC-S-EEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCC-C-eEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHH
Confidence 4678999999999999887664 52 2 3789999999999998876543 111112333444322
Q ss_pred ChhhHHHhhhc-cCCccEEEecCCCC
Q 011347 418 TTKKFESLIHK-LGSIDFVICQNSVP 442 (488)
Q Consensus 418 ~~~~Ie~l~~~-~g~~DLVIGGpPCQ 442 (488)
... .+.||+|+--|||.
T Consensus 125 --------~~~~~~~fD~I~lDP~~~ 142 (378)
T 2dul_A 125 --------MAERHRYFHFIDLDPFGS 142 (378)
T ss_dssp --------HHHSTTCEEEEEECCSSC
T ss_pred --------HHhccCCCCEEEeCCCCC
Confidence 222 24799999888886
No 76
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=96.55 E-value=0.0029 Score=61.66 Aligned_cols=78 Identities=17% Similarity=0.085 Sum_probs=57.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+.+|||+-||.|.++..|.+.|. -|+++|+|+.....++......+. ....++.+|+.+++ ++.+
T Consensus 28 ~~~~VLDiG~G~G~lt~~L~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~----------~~~f 94 (285)
T 1zq9_A 28 PTDVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD----------LPFF 94 (285)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC----------CCCC
T ss_pred CCCEEEEEcCcccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceeccc----------chhh
Confidence 567899999999999999998875 378999999998888765432211 12235668887653 1368
Q ss_pred cEEEecCCCCCc
Q 011347 433 DFVICQNSVPQI 444 (488)
Q Consensus 433 DLVIGGpPCQ~F 444 (488)
|+|++..|++-.
T Consensus 95 D~vv~nlpy~~~ 106 (285)
T 1zq9_A 95 DTCVANLPYQIS 106 (285)
T ss_dssp SEEEEECCGGGH
T ss_pred cEEEEecCcccc
Confidence 999999998754
No 77
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=96.50 E-value=0.0025 Score=63.23 Aligned_cols=80 Identities=13% Similarity=-0.030 Sum_probs=55.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCe----eeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIK----LKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 429 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~----~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~ 429 (488)
.+.+|||+.||.|++.+.+.+..-. -..++++|+++.+.++.+.+....+. ...+..+|..... ..
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~---------~~ 199 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANL---------LV 199 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCC---------CC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCcc---------cc
Confidence 4578999999999999887654311 13578999999998888775543322 2234556654321 12
Q ss_pred CCccEEEecCCCCC
Q 011347 430 GSIDFVICQNSVPQ 443 (488)
Q Consensus 430 g~~DLVIGGpPCQ~ 443 (488)
+.+|+|++-||..-
T Consensus 200 ~~fD~Ii~NPPfg~ 213 (344)
T 2f8l_A 200 DPVDVVISDLPVGY 213 (344)
T ss_dssp CCEEEEEEECCCSE
T ss_pred CCccEEEECCCCCC
Confidence 57999999999743
No 78
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=96.49 E-value=0.0055 Score=62.67 Aligned_cols=77 Identities=18% Similarity=0.288 Sum_probs=59.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+||||.||.|.+...+.+.|.+ |++||+++.+.+..+.+....+. ...++.+|+.+.... .+.||
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g~~---V~gvDis~~al~~A~~n~~~~~~-~v~~~~~D~~~~~~~--------~~~fD 300 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMGAE---VVGVEDDLASVLSLQKGLEANAL-KAQALHSDVDEALTE--------EARFD 300 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTTCE---EEEEESBHHHHHHHHHHHHHTTC-CCEEEECSTTTTSCT--------TCCEE
T ss_pred CCCEEEEEeeeCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHHcCC-CeEEEEcchhhcccc--------CCCeE
Confidence 5678999999999999999998863 67899999999888877654322 233566787765431 25799
Q ss_pred EEEecCCCC
Q 011347 434 FVICQNSVP 442 (488)
Q Consensus 434 LVIGGpPCQ 442 (488)
+|+..+|..
T Consensus 301 ~Ii~npp~~ 309 (381)
T 3dmg_A 301 IIVTNPPFH 309 (381)
T ss_dssp EEEECCCCC
T ss_pred EEEECCchh
Confidence 999988865
No 79
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=96.47 E-value=0.0044 Score=59.21 Aligned_cols=89 Identities=16% Similarity=0.086 Sum_probs=58.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhh---cCCCC-CcceeccccccChhhHHHhhhcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES---SGQTG-ELVQIEDIQALTTKKFESLIHKL 429 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~---~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~ 429 (488)
.+.+||||.||.|.+.+.+.+.+-. ..+++||+++.+.+..+.+... .+... ..++.+|+.++....+...+ ..
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~~-~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~-~~ 113 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLEK-AEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGL-PD 113 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCTT-EEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTC-CT
T ss_pred CCCEEEEeCChHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhcc-CC
Confidence 4578999999999999988776422 3478999999999888876543 22111 23567888776332111000 12
Q ss_pred CCccEEEecCCCCCc
Q 011347 430 GSIDFVICQNSVPQI 444 (488)
Q Consensus 430 g~~DLVIGGpPCQ~F 444 (488)
+.||+|+.-||....
T Consensus 114 ~~fD~Vv~nPPy~~~ 128 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDA 128 (260)
T ss_dssp TCEEEEEECCCC---
T ss_pred CCcCEEEECCCCcCC
Confidence 579999999998755
No 80
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=96.46 E-value=0.005 Score=54.96 Aligned_cols=82 Identities=16% Similarity=0.139 Sum_probs=58.9
Q ss_pred ccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhh
Q 011347 348 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH 427 (488)
Q Consensus 348 LK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~ 427 (488)
|..+.+.+.+|||+-||.|.+...+.+.|.. .++++|+++.+....+..... .....+...|+.++..
T Consensus 36 l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~-------- 103 (215)
T 2pxx_A 36 LEPELRPEDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDF-------- 103 (215)
T ss_dssp HGGGCCTTCCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCS--------
T ss_pred HHHhcCCCCeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCC--------
Confidence 3344466789999999999999999999863 478999999998887765432 1223356678776531
Q ss_pred ccCCccEEEecCCC
Q 011347 428 KLGSIDFVICQNSV 441 (488)
Q Consensus 428 ~~g~~DLVIGGpPC 441 (488)
..+.||+|+...+.
T Consensus 104 ~~~~fD~v~~~~~~ 117 (215)
T 2pxx_A 104 PSASFDVVLEKGTL 117 (215)
T ss_dssp CSSCEEEEEEESHH
T ss_pred CCCcccEEEECcch
Confidence 12579999976654
No 81
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=96.46 E-value=0.0052 Score=63.22 Aligned_cols=80 Identities=11% Similarity=0.107 Sum_probs=56.2
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCee-------------------------------------eeEEEeeCCHHHHHHH
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKL-------------------------------------KGVISIETSETNRRIL 395 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~-------------------------------------k~vvsVEid~~a~~t~ 395 (488)
..+.+|||+|||.|++.+.+-..+.++ ..|+++|+|+.+.+..
T Consensus 200 ~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~A 279 (393)
T 3k0b_A 200 HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIA 279 (393)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHH
Confidence 346789999999999876554433221 1378999999999998
Q ss_pred HHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCccEEEecCCC
Q 011347 396 KRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV 441 (488)
Q Consensus 396 ~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPC 441 (488)
+.+....+... ..+..+|+.++... +.+|+|+.-||-
T Consensus 280 r~Na~~~gl~~~I~~~~~D~~~~~~~---------~~fD~Iv~NPPY 317 (393)
T 3k0b_A 280 KQNAVEAGLGDLITFRQLQVADFQTE---------DEYGVVVANPPY 317 (393)
T ss_dssp HHHHHHTTCTTCSEEEECCGGGCCCC---------CCSCEEEECCCC
T ss_pred HHHHHHcCCCCceEEEECChHhCCCC---------CCCCEEEECCCC
Confidence 88765543322 33566888776531 479999999883
No 82
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=96.42 E-value=0.0068 Score=57.56 Aligned_cols=76 Identities=21% Similarity=0.217 Sum_probs=56.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||+.||.|.+...|.+.|.+ |+++|+++.+....+......+. ...+..+|+.++.. .+.+|
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~~---v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~---------~~~fD 186 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGYD---VTSWDHNENSIAFLNETKEKENL-NISTALYDINAANI---------QENYD 186 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCC---------CSCEE
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccc---------cCCcc
Confidence 4678999999999999999999974 68999999998888776543322 23355678776543 25789
Q ss_pred EEEecCCCC
Q 011347 434 FVICQNSVP 442 (488)
Q Consensus 434 LVIGGpPCQ 442 (488)
+|+...+..
T Consensus 187 ~i~~~~~~~ 195 (286)
T 3m70_A 187 FIVSTVVFM 195 (286)
T ss_dssp EEEECSSGG
T ss_pred EEEEccchh
Confidence 998766544
No 83
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=96.40 E-value=0.0038 Score=63.92 Aligned_cols=79 Identities=15% Similarity=0.261 Sum_probs=55.1
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCee-------------------------------------eeEEEeeCCHHHHHHH
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKL-------------------------------------KGVISIETSETNRRIL 395 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~-------------------------------------k~vvsVEid~~a~~t~ 395 (488)
..+.+|||+|||.|++.+.+-..|.++ ..|+++|+|+.+.+..
T Consensus 194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A 273 (385)
T 3ldu_A 194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA 273 (385)
T ss_dssp CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence 356789999999999877665443211 2378999999999988
Q ss_pred HHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCccEEEecCC
Q 011347 396 KRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNS 440 (488)
Q Consensus 396 ~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpP 440 (488)
+.+....+... ..+..+|+.++... +.+|+|+.-||
T Consensus 274 r~Na~~~gl~~~i~~~~~D~~~l~~~---------~~~D~Iv~NPP 310 (385)
T 3ldu_A 274 RENAEIAGVDEYIEFNVGDATQFKSE---------DEFGFIITNPP 310 (385)
T ss_dssp HHHHHHHTCGGGEEEEECCGGGCCCS---------CBSCEEEECCC
T ss_pred HHHHHHcCCCCceEEEECChhhcCcC---------CCCcEEEECCC
Confidence 87765443221 22456777766431 46999999988
No 84
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=96.39 E-value=0.0072 Score=52.38 Aligned_cols=75 Identities=11% Similarity=0.032 Sum_probs=53.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||+.||.|.+...+.+.+. .++++|+++.+.+..+.+....+.....+..+|+.+ .++ .+.+|
T Consensus 35 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~----~~~-----~~~~D 102 (183)
T 2yxd_A 35 KDDVVVDVGCGSGGMTVEIAKRCK---FVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED----VLD-----KLEFN 102 (183)
T ss_dssp TTCEEEEESCCCSHHHHHHHTTSS---EEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH----HGG-----GCCCS
T ss_pred CCCEEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc----ccc-----CCCCc
Confidence 457899999999999999888443 478999999998888776544322222344566653 111 15799
Q ss_pred EEEecCC
Q 011347 434 FVICQNS 440 (488)
Q Consensus 434 LVIGGpP 440 (488)
+|+..+|
T Consensus 103 ~i~~~~~ 109 (183)
T 2yxd_A 103 KAFIGGT 109 (183)
T ss_dssp EEEECSC
T ss_pred EEEECCc
Confidence 9998887
No 85
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=96.37 E-value=0.0026 Score=56.66 Aligned_cols=70 Identities=14% Similarity=0.097 Sum_probs=51.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+-+|||+.||.|.+...+.+.| .|+++|+++.+.+. . ....+..+|+.+.-.+ +.||
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~-------~--~~~~~~~~d~~~~~~~---------~~fD 80 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES-------H--RGGNLVRADLLCSINQ---------ESVD 80 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT-------C--SSSCEEECSTTTTBCG---------GGCS
T ss_pred CCCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc-------c--cCCeEEECChhhhccc---------CCCC
Confidence 34589999999999999999988 37899999997654 1 1233567888652211 4699
Q ss_pred EEEecCCCCCcc
Q 011347 434 FVICQNSVPQIP 445 (488)
Q Consensus 434 LVIGGpPCQ~FS 445 (488)
+|+..+|-...+
T Consensus 81 ~i~~n~~~~~~~ 92 (170)
T 3q87_B 81 VVVFNPPYVPDT 92 (170)
T ss_dssp EEEECCCCBTTC
T ss_pred EEEECCCCccCC
Confidence 999988765443
No 86
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=96.33 E-value=0.0044 Score=61.67 Aligned_cols=98 Identities=15% Similarity=0.098 Sum_probs=65.5
Q ss_pred HhhhhhcccC--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCC
Q 011347 330 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE 407 (488)
Q Consensus 330 k~Lgnsfqvd--ti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~ 407 (488)
|.+|-.|-+| .+..++..+.. ..+-+|||+-||.|.++..|.+.|- -|++||+|+.....++..... ....
T Consensus 26 k~~GQnfL~d~~i~~~Iv~~l~~--~~~~~VLEIG~G~G~lT~~La~~~~---~V~aVEid~~li~~a~~~~~~--~~~v 98 (295)
T 3gru_A 26 KKLGQCFLIDKNFVNKAVESANL--TKDDVVLEIGLGKGILTEELAKNAK---KVYVIEIDKSLEPYANKLKEL--YNNI 98 (295)
T ss_dssp ----CCEECCHHHHHHHHHHTTC--CTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCGGGHHHHHHHHHH--CSSE
T ss_pred cccCccccCCHHHHHHHHHhcCC--CCcCEEEEECCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHhcc--CCCe
Confidence 3446555333 34444444432 2457899999999999999988874 378999999999888876542 2233
Q ss_pred cceeccccccChhhHHHhhhccCCccEEEecCCCC
Q 011347 408 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP 442 (488)
Q Consensus 408 lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ 442 (488)
.++.+|+.+++-.. ..+|+|++..|-+
T Consensus 99 ~vi~gD~l~~~~~~--------~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 99 EIIWGDALKVDLNK--------LDFNKVVANLPYQ 125 (295)
T ss_dssp EEEESCTTTSCGGG--------SCCSEEEEECCGG
T ss_pred EEEECchhhCCccc--------CCccEEEEeCccc
Confidence 46779998876332 2589999888743
No 87
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=96.32 E-value=0.0079 Score=62.40 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=61.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||+.||.||.+..+..+--.-..|+++|+++...+..+.+....+.....+..+|+.++... + ..+.||
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~-~-----~~~~fD 332 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEI-I-----GEEVAD 332 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSS-S-----CSSCEE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchh-h-----ccCCCC
Confidence 4678999999999999888764111024789999999988888765543332333556777765421 1 014699
Q ss_pred EEEecCCCCCcccc
Q 011347 434 FVICQNSVPQIPNS 447 (488)
Q Consensus 434 LVIGGpPCQ~FS~a 447 (488)
+|+--+||.++...
T Consensus 333 ~Vl~D~Pcsg~g~~ 346 (450)
T 2yxl_A 333 KVLLDAPCTSSGTI 346 (450)
T ss_dssp EEEEECCCCCGGGT
T ss_pred EEEEcCCCCCCeee
Confidence 99999999988754
No 88
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=96.32 E-value=0.011 Score=54.04 Aligned_cols=96 Identities=18% Similarity=0.111 Sum_probs=61.9
Q ss_pred hccccccCCCCCcccccCCCCChhHHHHHHcCC----eeeeEEEeeCCHHHHHHHHHHhhhcC-----CCCCcceecccc
Q 011347 345 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGI----KLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQ 415 (488)
Q Consensus 345 lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi----~~k~vvsVEid~~a~~t~~~~~~~~n-----~~g~lv~~~DI~ 415 (488)
+..|......+.+|||+-||.|.+...+.+.+- +-..|+++|+++...+..+.+....+ .....+..+|+.
T Consensus 71 ~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 150 (227)
T 2pbf_A 71 LKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIY 150 (227)
T ss_dssp HHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGG
T ss_pred HHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChH
Confidence 444443344568999999999999988887642 11247899999998888777654332 122335567776
Q ss_pred ccChhhHHHhhhccCCccEEEecCCCCCc
Q 011347 416 ALTTKKFESLIHKLGSIDFVICQNSVPQI 444 (488)
Q Consensus 416 ~L~~~~Ie~l~~~~g~~DLVIGGpPCQ~F 444 (488)
+...+... ..+.||+|+...++..+
T Consensus 151 ~~~~~~~~----~~~~fD~I~~~~~~~~~ 175 (227)
T 2pbf_A 151 QVNEEEKK----ELGLFDAIHVGASASEL 175 (227)
T ss_dssp GCCHHHHH----HHCCEEEEEECSBBSSC
T ss_pred hcccccCc----cCCCcCEEEECCchHHH
Confidence 64311111 12579999988877644
No 89
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=96.31 E-value=0.0077 Score=59.13 Aligned_cols=75 Identities=16% Similarity=0.167 Sum_probs=57.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+ +|||+-||.|.++..|.+.|- -|+++|+|+.....++..... ....++.+|+.+++-.++ ..+|
T Consensus 47 ~~-~VLEIG~G~G~lt~~L~~~~~---~V~avEid~~~~~~l~~~~~~---~~v~vi~~D~l~~~~~~~-------~~~~ 112 (271)
T 3fut_A 47 TG-PVFEVGPGLGALTRALLEAGA---EVTAIEKDLRLRPVLEETLSG---LPVRLVFQDALLYPWEEV-------PQGS 112 (271)
T ss_dssp CS-CEEEECCTTSHHHHHHHHTTC---CEEEEESCGGGHHHHHHHTTT---SSEEEEESCGGGSCGGGS-------CTTE
T ss_pred CC-eEEEEeCchHHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcCC---CCEEEEECChhhCChhhc-------cCcc
Confidence 45 999999999999999999984 378999999999888875431 223467799988875432 2579
Q ss_pred EEEecCCCC
Q 011347 434 FVICQNSVP 442 (488)
Q Consensus 434 LVIGGpPCQ 442 (488)
+|+|-.|=+
T Consensus 113 ~iv~NlPy~ 121 (271)
T 3fut_A 113 LLVANLPYH 121 (271)
T ss_dssp EEEEEECSS
T ss_pred EEEecCccc
Confidence 999988743
No 90
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=96.28 E-value=0.0056 Score=56.04 Aligned_cols=82 Identities=17% Similarity=0.147 Sum_probs=57.5
Q ss_pred hhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHH
Q 011347 344 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE 423 (488)
Q Consensus 344 ~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie 423 (488)
.+..+..+.+.+.+|||+-||.|.+...|.+.|.+ ++++|+++.+....+... ...+..++.+|+.++...
T Consensus 43 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~--- 113 (242)
T 3l8d_A 43 IIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYK---AVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLPFE--- 113 (242)
T ss_dssp HHHHHHHHSCTTCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCSSC---
T ss_pred HHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHcCCe---EEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCCCC---
Confidence 34445555667889999999999999999999874 678999999887776421 122333566777766421
Q ss_pred HhhhccCCccEEEecC
Q 011347 424 SLIHKLGSIDFVICQN 439 (488)
Q Consensus 424 ~l~~~~g~~DLVIGGp 439 (488)
.+.||+|+...
T Consensus 114 -----~~~fD~v~~~~ 124 (242)
T 3l8d_A 114 -----NEQFEAIMAIN 124 (242)
T ss_dssp -----TTCEEEEEEES
T ss_pred -----CCCccEEEEcC
Confidence 24688888543
No 91
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=96.27 E-value=0.0043 Score=55.41 Aligned_cols=82 Identities=12% Similarity=0.076 Sum_probs=55.9
Q ss_pred CCCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhcc
Q 011347 352 FPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKL 429 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~ 429 (488)
.+.+.+|||+.||.|.+...+.+. |-. ..++++|+++.+.+..+.+....+. ....++.+|+.++.. . ..
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~--~~ 91 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGEN-GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDK-----Y--ID 91 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTT-CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGG-----T--CC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhh-----h--cc
Confidence 345679999999999999887765 211 1478999999998888776544321 122345677765532 1 12
Q ss_pred CCccEEEecCCC
Q 011347 430 GSIDFVICQNSV 441 (488)
Q Consensus 430 g~~DLVIGGpPC 441 (488)
+.||+|+..+|-
T Consensus 92 ~~fD~v~~~~~~ 103 (197)
T 3eey_A 92 CPVKAVMFNLGY 103 (197)
T ss_dssp SCEEEEEEEESB
T ss_pred CCceEEEEcCCc
Confidence 579999988766
No 92
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=96.26 E-value=0.012 Score=53.01 Aligned_cols=80 Identities=11% Similarity=0.009 Sum_probs=55.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||+.||.|.++..+.+.|=. ..++++|+++.+.+..+.+....+.....+..+|+.+.-. ..+.+|
T Consensus 40 ~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~~D 110 (204)
T 3e05_A 40 DDLVMWDIGAGSASVSIEASNLMPN-GRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD--------DLPDPD 110 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHCTT-SEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT--------TSCCCS
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh--------cCCCCC
Confidence 5678999999999999999888721 2478999999998888876544332222345566643321 225799
Q ss_pred EEEecCCCC
Q 011347 434 FVICQNSVP 442 (488)
Q Consensus 434 LVIGGpPCQ 442 (488)
+|+.+.+..
T Consensus 111 ~i~~~~~~~ 119 (204)
T 3e05_A 111 RVFIGGSGG 119 (204)
T ss_dssp EEEESCCTT
T ss_pred EEEECCCCc
Confidence 999877654
No 93
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=96.25 E-value=0.0073 Score=62.05 Aligned_cols=80 Identities=10% Similarity=0.086 Sum_probs=56.2
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCee-------------------------------------eeEEEeeCCHHHHHHH
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKL-------------------------------------KGVISIETSETNRRIL 395 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~-------------------------------------k~vvsVEid~~a~~t~ 395 (488)
..+.+++|.|||.|++.+..-..+.++ ..++++|+|+.+.+..
T Consensus 193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A 272 (384)
T 3ldg_A 193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA 272 (384)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence 346789999999999876554433221 1378999999999998
Q ss_pred HHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCccEEEecCCC
Q 011347 396 KRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV 441 (488)
Q Consensus 396 ~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPC 441 (488)
+.+....+..+ ..+..+|+.++... +.+|+|+.-||-
T Consensus 273 r~Na~~~gl~~~I~~~~~D~~~l~~~---------~~fD~Iv~NPPY 310 (384)
T 3ldg_A 273 RKNAREVGLEDVVKLKQMRLQDFKTN---------KINGVLISNPPY 310 (384)
T ss_dssp HHHHHHTTCTTTEEEEECCGGGCCCC---------CCSCEEEECCCC
T ss_pred HHHHHHcCCCCceEEEECChHHCCcc---------CCcCEEEECCch
Confidence 88776543322 23566788776531 479999998884
No 94
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=96.23 E-value=0.0053 Score=58.45 Aligned_cols=75 Identities=13% Similarity=0.177 Sum_probs=53.6
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
+.+.+|||+-||.|.+...+.++|. .|+++|+|+.+....+.+....+.. ..+..+|+.+. + ..+.+
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~----~-----~~~~f 185 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAA----L-----PFGPF 185 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHH----G-----GGCCE
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhc----C-----cCCCC
Confidence 4567999999999999999999996 4789999999998888765433221 22344555431 1 12579
Q ss_pred cEEEecCC
Q 011347 433 DFVICQNS 440 (488)
Q Consensus 433 DLVIGGpP 440 (488)
|+|+...+
T Consensus 186 D~Vv~n~~ 193 (254)
T 2nxc_A 186 DLLVANLY 193 (254)
T ss_dssp EEEEEECC
T ss_pred CEEEECCc
Confidence 99997543
No 95
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=96.21 E-value=0.0044 Score=60.12 Aligned_cols=99 Identities=13% Similarity=0.093 Sum_probs=63.5
Q ss_pred HhhhhhcccC--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCC
Q 011347 330 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE 407 (488)
Q Consensus 330 k~Lgnsfqvd--ti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~ 407 (488)
|.+|-.|-+| .+..++..+. ...+-+|||+-||.|.++..|.+.|- -|+++|+|+.....++..... ....
T Consensus 5 k~~GQnFL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~---~V~avEid~~~~~~~~~~~~~--~~~v 77 (255)
T 3tqs_A 5 KRFGQHFLHDSFVLQKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTECD---NLALVEIDRDLVAFLQKKYNQ--QKNI 77 (255)
T ss_dssp ----CCEECCHHHHHHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTSS---EEEEEECCHHHHHHHHHHHTT--CTTE
T ss_pred CcCCcccccCHHHHHHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHhh--CCCc
Confidence 3456656433 3333343332 12467899999999999999998883 478999999999988876532 2233
Q ss_pred cceeccccccChhhHHHhhhccCCccEEEecCC
Q 011347 408 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNS 440 (488)
Q Consensus 408 lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpP 440 (488)
.++.+|+.+++-.++. ..+++| |+|-+|
T Consensus 78 ~~i~~D~~~~~~~~~~----~~~~~~-vv~NlP 105 (255)
T 3tqs_A 78 TIYQNDALQFDFSSVK----TDKPLR-VVGNLP 105 (255)
T ss_dssp EEEESCTTTCCGGGSC----CSSCEE-EEEECC
T ss_pred EEEEcchHhCCHHHhc----cCCCeE-EEecCC
Confidence 4677999888743321 013577 777776
No 96
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=96.21 E-value=0.0078 Score=52.53 Aligned_cols=76 Identities=16% Similarity=0.165 Sum_probs=55.7
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347 352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
.+.+.+|||+-||.|.+...+.+.|.+ ++++|+++.+....+.... ...+...|+.++.. ..+.
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~---v~~~D~~~~~~~~a~~~~~-----~~~~~~~d~~~~~~--------~~~~ 107 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQGHD---VLGTDLDPILIDYAKQDFP-----EARWVVGDLSVDQI--------SETD 107 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHHCT-----TSEEEECCTTTSCC--------CCCC
T ss_pred ccCCCeEEEECCCCCHHHHHHHHCCCc---EEEEcCCHHHHHHHHHhCC-----CCcEEEcccccCCC--------CCCc
Confidence 456789999999999999999999864 6889999998877765331 23356677776531 1257
Q ss_pred ccEEEecCCCCC
Q 011347 432 IDFVICQNSVPQ 443 (488)
Q Consensus 432 ~DLVIGGpPCQ~ 443 (488)
+|+|+..+++-.
T Consensus 108 ~D~i~~~~~~~~ 119 (195)
T 3cgg_A 108 FDLIVSAGNVMG 119 (195)
T ss_dssp EEEEEECCCCGG
T ss_pred eeEEEECCcHHh
Confidence 999997655543
No 97
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=96.19 E-value=0.013 Score=51.64 Aligned_cols=75 Identities=16% Similarity=0.115 Sum_probs=54.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||+-||.|.+...+.+.|.+ ++++|+++.+.+..+......+.....+...|+.++.. .+.+|
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---------~~~~D 99 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAANGYD---VDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF---------DRQYD 99 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC---------CCCEE
T ss_pred CCCeEEEEcCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC---------CCCce
Confidence 3459999999999999999988864 68899999988887776543322233355677776542 25789
Q ss_pred EEEecCC
Q 011347 434 FVICQNS 440 (488)
Q Consensus 434 LVIGGpP 440 (488)
+|+....
T Consensus 100 ~v~~~~~ 106 (199)
T 2xvm_A 100 FILSTVV 106 (199)
T ss_dssp EEEEESC
T ss_pred EEEEcch
Confidence 9886654
No 98
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=96.18 E-value=0.011 Score=54.02 Aligned_cols=82 Identities=20% Similarity=0.083 Sum_probs=56.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+||||.||.|.+...+.+..-. ..+++||+++.+....+.+....+.....++.+|+.++.. .+ ..+.+|
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~-~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~-----~~~~~D 113 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPD-INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTD-YF-----EDGEID 113 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGG-TS-----CTTCCS
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCC-CCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHh-hc-----CCCCCC
Confidence 4678999999999999988776311 2478999999998888776544332233456788876431 01 125799
Q ss_pred EEEecCCCC
Q 011347 434 FVICQNSVP 442 (488)
Q Consensus 434 LVIGGpPCQ 442 (488)
+|+..+|..
T Consensus 114 ~i~~~~~~~ 122 (214)
T 1yzh_A 114 RLYLNFSDP 122 (214)
T ss_dssp EEEEESCCC
T ss_pred EEEEECCCC
Confidence 999887754
No 99
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=96.17 E-value=0.0086 Score=61.58 Aligned_cols=86 Identities=12% Similarity=0.109 Sum_probs=62.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||+.||.||.+..+..++-. -.|+++|+++...+..+.+....+. ...+..+|..++... + ..+.||
T Consensus 246 ~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~~~~~~~-~-----~~~~fD 317 (429)
T 1sqg_A 246 NGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPSQW-C-----GEQQFD 317 (429)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTHHH-H-----TTCCEE
T ss_pred CcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCchhhchhh-c-----ccCCCC
Confidence 4678999999999999998876532 2478999999988888876554332 223556777665321 1 124799
Q ss_pred EEEecCCCCCcccc
Q 011347 434 FVICQNSVPQIPNS 447 (488)
Q Consensus 434 LVIGGpPCQ~FS~a 447 (488)
+|+.-+||.++...
T Consensus 318 ~Vl~D~Pcsg~g~~ 331 (429)
T 1sqg_A 318 RILLDAPCSATGVI 331 (429)
T ss_dssp EEEEECCCCCGGGT
T ss_pred EEEEeCCCCccccc
Confidence 99999999988754
No 100
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=96.16 E-value=0.011 Score=54.11 Aligned_cols=91 Identities=18% Similarity=0.110 Sum_probs=60.5
Q ss_pred hccccccCCCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcC-----CCCCcceeccccccC
Q 011347 345 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALT 418 (488)
Q Consensus 345 lsvLK~~fp~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n-----~~g~lv~~~DI~~L~ 418 (488)
+..|......+.+|||+-||.|+++..+.+. |-.. .|+++|+++...+..+.+....+ .....+...|+....
T Consensus 68 l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 146 (226)
T 1i1n_A 68 LELLFDQLHEGAKALDVGSGSGILTACFARMVGCTG-KVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY 146 (226)
T ss_dssp HHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTC-EEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC
T ss_pred HHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCc
Confidence 3444433456789999999999999888765 4221 47899999998887776554321 112224556765432
Q ss_pred hhhHHHhhhccCCccEEEecCCCCCc
Q 011347 419 TKKFESLIHKLGSIDFVICQNSVPQI 444 (488)
Q Consensus 419 ~~~Ie~l~~~~g~~DLVIGGpPCQ~F 444 (488)
. ..+.||+|+...||..+
T Consensus 147 ~--------~~~~fD~i~~~~~~~~~ 164 (226)
T 1i1n_A 147 A--------EEAPYDAIHVGAAAPVV 164 (226)
T ss_dssp G--------GGCCEEEEEECSBBSSC
T ss_pred c--------cCCCcCEEEECCchHHH
Confidence 1 12579999999998765
No 101
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=96.16 E-value=0.014 Score=53.69 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=53.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+.+|||+.||.|.+++.+.+.|.+ |+++|+++.+.+..+.+....+.. ...++.+|+.+.- ...+.+
T Consensus 55 ~~~~vLDlGcG~G~~~~~la~~~~~---v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--------~~~~~~ 123 (204)
T 3njr_A 55 RGELLWDIGGGSGSVSVEWCLAGGR---AITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAAL--------ADLPLP 123 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGG--------TTSCCC
T ss_pred CCCEEEEecCCCCHHHHHHHHcCCE---EEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhc--------ccCCCC
Confidence 4678999999999999988888653 789999999988888765443323 2335567776521 122579
Q ss_pred cEEEecC
Q 011347 433 DFVICQN 439 (488)
Q Consensus 433 DLVIGGp 439 (488)
|+|+-+.
T Consensus 124 D~v~~~~ 130 (204)
T 3njr_A 124 EAVFIGG 130 (204)
T ss_dssp SEEEECS
T ss_pred CEEEECC
Confidence 9998544
No 102
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=96.14 E-value=0.0026 Score=63.79 Aligned_cols=96 Identities=11% Similarity=0.081 Sum_probs=59.3
Q ss_pred HhhhhhcccCcchhhh-ccccccCCCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCC
Q 011347 330 ESLRHCFQTDTLGYHL-SVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGE 407 (488)
Q Consensus 330 k~Lgnsfqvdti~~~l-svLK~~fp~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~ 407 (488)
+.+|..|..+.+...+ ..+.. +.+.+|||+.||.|++.+.+.+. +-. ..++++|+++.+.+.. ...
T Consensus 16 ~~~g~~~TP~~l~~~~~~~~~~--~~~~~vLD~gcGtG~~~~~~~~~~~~~-~~i~gvDi~~~~~~~a---------~~~ 83 (421)
T 2ih2_A 16 RSLGRVETPPEVVDFMVSLAEA--PRGGRVLEPACAHGPFLRAFREAHGTA-YRFVGVEIDPKALDLP---------PWA 83 (421)
T ss_dssp -----CCCCHHHHHHHHHHCCC--CTTCEEEEETCTTCHHHHHHHHHHCSC-SEEEEEESCTTTCCCC---------TTE
T ss_pred ccCceEeCCHHHHHHHHHhhcc--CCCCEEEECCCCChHHHHHHHHHhCCC-CeEEEEECCHHHHHhC---------CCC
Confidence 4556666555544432 22322 34569999999999999988753 211 3478999999874322 122
Q ss_pred cceeccccccChhhHHHhhhccCCccEEEecCCCCCccc
Q 011347 408 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPN 446 (488)
Q Consensus 408 lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~ 446 (488)
.++.+|+.+... .+.+|+|++-||.-....
T Consensus 84 ~~~~~D~~~~~~---------~~~fD~Ii~NPPy~~~~~ 113 (421)
T 2ih2_A 84 EGILADFLLWEP---------GEAFDLILGNPPYGIVGE 113 (421)
T ss_dssp EEEESCGGGCCC---------SSCEEEEEECCCCCCBSC
T ss_pred cEEeCChhhcCc---------cCCCCEEEECcCccCccc
Confidence 356678765532 157999999999976653
No 103
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=96.09 E-value=0.0097 Score=53.79 Aligned_cols=85 Identities=19% Similarity=0.275 Sum_probs=58.3
Q ss_pred cccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-----CCcceeccccccChhh
Q 011347 347 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-----GELVQIEDIQALTTKK 421 (488)
Q Consensus 347 vLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-----g~lv~~~DI~~L~~~~ 421 (488)
.+..+.+.+.+|||+-||.|.+...+.+.|.+ ++++|+++.+.+..+......+.. ...+...|+.++..
T Consensus 23 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-- 97 (235)
T 3sm3_A 23 IIHNYLQEDDEILDIGCGSGKISLELASKGYS---VTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSF-- 97 (235)
T ss_dssp THHHHCCTTCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCS--
T ss_pred HHHHhCCCCCeEEEECCCCCHHHHHHHhCCCe---EEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCC--
Confidence 34445567889999999999999999999864 688999999888887654322111 11244566665531
Q ss_pred HHHhhhccCCccEEEecCCCC
Q 011347 422 FESLIHKLGSIDFVICQNSVP 442 (488)
Q Consensus 422 Ie~l~~~~g~~DLVIGGpPCQ 442 (488)
..+.+|+|+......
T Consensus 98 ------~~~~~D~v~~~~~l~ 112 (235)
T 3sm3_A 98 ------HDSSFDFAVMQAFLT 112 (235)
T ss_dssp ------CTTCEEEEEEESCGG
T ss_pred ------CCCceeEEEEcchhh
Confidence 125799999765433
No 104
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=96.07 E-value=0.016 Score=52.24 Aligned_cols=70 Identities=20% Similarity=0.236 Sum_probs=52.3
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347 352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
.+.+.+|||+-||.|.+...|.+.|.+ ++++|+++......+... +..+...|+.++.. .+.
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~~---------~~~ 102 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAAGFD---VDATDGSPELAAEASRRL------GRPVRTMLFHQLDA---------IDA 102 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHH------TSCCEECCGGGCCC---------CSC
T ss_pred cCCCCcEEEECCCCCHHHHHHHHcCCe---EEEECCCHHHHHHHHHhc------CCceEEeeeccCCC---------CCc
Confidence 445789999999999999999999874 678999999887776543 12245677776651 257
Q ss_pred ccEEEecC
Q 011347 432 IDFVICQN 439 (488)
Q Consensus 432 ~DLVIGGp 439 (488)
||+|+...
T Consensus 103 fD~v~~~~ 110 (211)
T 3e23_A 103 YDAVWAHA 110 (211)
T ss_dssp EEEEEECS
T ss_pred EEEEEecC
Confidence 88888654
No 105
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.99 E-value=0.0054 Score=45.84 Aligned_cols=37 Identities=14% Similarity=0.340 Sum_probs=31.2
Q ss_pred hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhc
Q 011347 2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSG 40 (488)
Q Consensus 2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~ 40 (488)
+++.+|++|||++++|..|+..++-+ ++.-++.++.+
T Consensus 10 ~~i~~L~~MGF~~~~a~~AL~~~~~n--~e~A~e~L~~g 46 (49)
T 1ify_A 10 TMLTEIMSMGYERERVVAALRASYNN--PHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHTTTSC--SHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHhC
Confidence 46789999999999999999999975 66667887764
No 106
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=95.99 E-value=0.0074 Score=56.48 Aligned_cols=77 Identities=18% Similarity=0.164 Sum_probs=56.3
Q ss_pred ccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHh
Q 011347 346 SVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL 425 (488)
Q Consensus 346 svLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l 425 (488)
..|....+.+.+|||+-||.|.+...|.+.|.+ |+++|+++......+.... ...++.+|+.++..
T Consensus 42 ~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~------ 107 (263)
T 3pfg_A 42 ALVRRHSPKAASLLDVACGTGMHLRHLADSFGT---VEGLELSADMLAIARRRNP-----DAVLHHGDMRDFSL------ 107 (263)
T ss_dssp HHHHHHCTTCCEEEEETCTTSHHHHHHTTTSSE---EEEEESCHHHHHHHHHHCT-----TSEEEECCTTTCCC------
T ss_pred HHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCCe---EEEEECCHHHHHHHHhhCC-----CCEEEECChHHCCc------
Confidence 334445567789999999999999999999864 6889999998877765321 23356688876543
Q ss_pred hhccCCccEEEecC
Q 011347 426 IHKLGSIDFVICQN 439 (488)
Q Consensus 426 ~~~~g~~DLVIGGp 439 (488)
.+.||+|+...
T Consensus 108 ---~~~fD~v~~~~ 118 (263)
T 3pfg_A 108 ---GRRFSAVTCMF 118 (263)
T ss_dssp ---SCCEEEEEECT
T ss_pred ---cCCcCEEEEcC
Confidence 14788888643
No 107
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=95.95 E-value=0.012 Score=52.55 Aligned_cols=73 Identities=16% Similarity=0.233 Sum_probs=52.0
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
+.+ +|||+-||.|.+...|.+.|.+ ++++|+++.+....+......+. ...+...|+.++.. ..+.+
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~--------~~~~f 95 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASLGYE---VTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDI--------VADAW 95 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTTTCE---EEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBSC--------CTTTC
T ss_pred CCC-CEEEECCCCCHhHHHHHhCCCe---EEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcCC--------CcCCc
Confidence 445 9999999999999999999874 68899999988877765543221 22345577766531 12468
Q ss_pred cEEEec
Q 011347 433 DFVICQ 438 (488)
Q Consensus 433 DLVIGG 438 (488)
|+|+..
T Consensus 96 D~v~~~ 101 (202)
T 2kw5_A 96 EGIVSI 101 (202)
T ss_dssp SEEEEE
T ss_pred cEEEEE
Confidence 999864
No 108
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=95.92 E-value=0.017 Score=53.81 Aligned_cols=79 Identities=20% Similarity=0.209 Sum_probs=55.4
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCC
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
.+.+|||+.||.|++...+.+. |=. ..++++|+++...+..+.+....+..+ ..+..+|+.+.-. .+.
T Consensus 93 ~~~~vldiG~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~~ 162 (255)
T 3mb5_A 93 PGDFIVEAGVGSGALTLFLANIVGPE-GRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIE---------EEN 162 (255)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCC---------CCS
T ss_pred CCCEEEEecCCchHHHHHHHHHhCCC-eEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccC---------CCC
Confidence 5678999999999999999887 311 247899999998888877654433222 2345677764311 146
Q ss_pred ccEEEecCCCC
Q 011347 432 IDFVICQNSVP 442 (488)
Q Consensus 432 ~DLVIGGpPCQ 442 (488)
+|+|+..+|+.
T Consensus 163 ~D~v~~~~~~~ 173 (255)
T 3mb5_A 163 VDHVILDLPQP 173 (255)
T ss_dssp EEEEEECSSCG
T ss_pred cCEEEECCCCH
Confidence 99999877765
No 109
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=95.91 E-value=0.017 Score=52.62 Aligned_cols=74 Identities=16% Similarity=0.129 Sum_probs=53.8
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
+.+.+|||+-||.|.+...+.+.|.+ ++++|+++......+......+. ...+...|+.++.. . +.+
T Consensus 36 ~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~--------~-~~f 102 (246)
T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPKFKN---TWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNI--------N-RKF 102 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSSE---EEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCC--------S-CCE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHCCCc---EEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCc--------c-CCc
Confidence 46679999999999999999999864 68899999988877765543221 23345677766542 1 579
Q ss_pred cEEEecC
Q 011347 433 DFVICQN 439 (488)
Q Consensus 433 DLVIGGp 439 (488)
|+|+...
T Consensus 103 D~v~~~~ 109 (246)
T 1y8c_A 103 DLITCCL 109 (246)
T ss_dssp EEEEECT
T ss_pred eEEEEcC
Confidence 9998643
No 110
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=95.89 E-value=0.019 Score=52.44 Aligned_cols=80 Identities=16% Similarity=0.121 Sum_probs=57.1
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
..+.+|||+-||.|.+...+...|. .++++|+++......+......+ ...+..+|+.+.-. ..+.+
T Consensus 69 ~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~--------~~~~f 135 (231)
T 1vbf_A 69 HKGQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYE--------EEKPY 135 (231)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCG--------GGCCE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHcC---EEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCcccccc--------cCCCc
Confidence 3567899999999999999998883 47899999999888876553221 22345677765211 12579
Q ss_pred cEEEecCCCCCcc
Q 011347 433 DFVICQNSVPQIP 445 (488)
Q Consensus 433 DLVIGGpPCQ~FS 445 (488)
|+|+...++..+.
T Consensus 136 D~v~~~~~~~~~~ 148 (231)
T 1vbf_A 136 DRVVVWATAPTLL 148 (231)
T ss_dssp EEEEESSBBSSCC
T ss_pred cEEEECCcHHHHH
Confidence 9999887776553
No 111
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=95.85 E-value=0.0084 Score=43.23 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=29.3
Q ss_pred hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhh
Q 011347 2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFS 39 (488)
Q Consensus 2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a 39 (488)
+++.+|++|||+++++..|+..|+- .++.-++.++.
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~~~~~--n~e~A~~~L~~ 41 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALEKCNW--DLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHTS--CHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCc--CHHHHHHHHHc
Confidence 4678999999999999999999976 46666666654
No 112
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=95.81 E-value=0.016 Score=50.31 Aligned_cols=79 Identities=16% Similarity=0.156 Sum_probs=54.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+.+|||+.||.|.+...+.+.+ ..++++|+++.+.+..+.+....+. ....+..+|+.+ .....+.+
T Consensus 33 ~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--------~~~~~~~~ 101 (192)
T 1l3i_A 33 KNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE--------ALCKIPDI 101 (192)
T ss_dssp TTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH--------HHTTSCCE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH--------hcccCCCC
Confidence 56789999999999999998888 3478999999998888776543322 122233455432 11122579
Q ss_pred cEEEecCCCCC
Q 011347 433 DFVICQNSVPQ 443 (488)
Q Consensus 433 DLVIGGpPCQ~ 443 (488)
|+|+...+...
T Consensus 102 D~v~~~~~~~~ 112 (192)
T 1l3i_A 102 DIAVVGGSGGE 112 (192)
T ss_dssp EEEEESCCTTC
T ss_pred CEEEECCchHH
Confidence 99998776543
No 113
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.79 E-value=0.0056 Score=45.10 Aligned_cols=35 Identities=17% Similarity=0.374 Sum_probs=30.0
Q ss_pred hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhh
Q 011347 2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFS 39 (488)
Q Consensus 2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a 39 (488)
+++.+|++|||+++++..|+..+| .++.-++.|+.
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~~~---n~e~A~~~L~~ 45 (47)
T 2ekk_A 11 QQLQQLMDMGFTREHAMEALLNTS---TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHSC---SHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC---CHHHHHHHHHc
Confidence 456899999999999999999997 57777887764
No 114
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=95.79 E-value=0.018 Score=58.02 Aligned_cols=81 Identities=12% Similarity=0.106 Sum_probs=58.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccc-cChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA-LTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~-L~~~~Ie~l~~~~g~~ 432 (488)
.+.+|||+. |.|.+++.+.+.|.. ..|+++|+++.+.+..+.+....+.....++.+|+.+ +... ..+.|
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~-~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~-------~~~~f 242 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLP-KRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDY-------ALHKF 242 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCC-SEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTT-------TSSCB
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhh-------ccCCc
Confidence 457899999 999999999888752 2478999999998888876654332223356788876 4321 01479
Q ss_pred cEEEecCCCCC
Q 011347 433 DFVICQNSVPQ 443 (488)
Q Consensus 433 DLVIGGpPCQ~ 443 (488)
|+|+-.+||..
T Consensus 243 D~Vi~~~p~~~ 253 (373)
T 2qm3_A 243 DTFITDPPETL 253 (373)
T ss_dssp SEEEECCCSSH
T ss_pred cEEEECCCCch
Confidence 99999999853
No 115
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=95.77 E-value=0.023 Score=52.48 Aligned_cols=71 Identities=17% Similarity=0.166 Sum_probs=51.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||+-||.|.+...|.+.|.+ ++++|+++...+..+......+. ...+..+|+.++.. .+.+|
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~~~~---v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~---------~~~fD 107 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAERGYE---VVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAF---------KNEFD 107 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCC---------CSCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhccc---------CCCcc
Confidence 4578999999999999999999874 68899999988887765543221 23355677766532 13577
Q ss_pred EEEe
Q 011347 434 FVIC 437 (488)
Q Consensus 434 LVIG 437 (488)
+|+.
T Consensus 108 ~v~~ 111 (252)
T 1wzn_A 108 AVTM 111 (252)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7763
No 116
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=95.77 E-value=0.015 Score=55.25 Aligned_cols=75 Identities=16% Similarity=0.011 Sum_probs=53.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+-+|||+.||.|.++..|.+.|. -|+++|+|+.....++..... .....++.+|+.++.-.. ...+
T Consensus 30 ~~~~VLDiG~G~G~lt~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~~~~~~~-------~~~~- 96 (244)
T 1qam_A 30 EHDNIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFKFPK-------NQSY- 96 (244)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCCCCS-------SCCC-
T ss_pred CCCEEEEEeCCchHHHHHHHHcCC---eEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHHhCCccc-------CCCe-
Confidence 567899999999999999998883 478999999998888765432 123336678887765311 1234
Q ss_pred EEEecCCC
Q 011347 434 FVICQNSV 441 (488)
Q Consensus 434 LVIGGpPC 441 (488)
.|++.+|=
T Consensus 97 ~vv~nlPy 104 (244)
T 1qam_A 97 KIFGNIPY 104 (244)
T ss_dssp EEEEECCG
T ss_pred EEEEeCCc
Confidence 56777764
No 117
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=95.71 E-value=0.015 Score=54.03 Aligned_cols=73 Identities=19% Similarity=0.144 Sum_probs=53.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||+-||.|.+...|.+.|.. .++++|+++.+.+..+.... .....+..+|+.++.. ..+.||
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~--------~~~~fD 110 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAI--------EPDAYN 110 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCC--------CTTCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCC--------CCCCeE
Confidence 5689999999999999999999863 47899999998877765432 1223356678776542 125788
Q ss_pred EEEecC
Q 011347 434 FVICQN 439 (488)
Q Consensus 434 LVIGGp 439 (488)
+|+...
T Consensus 111 ~v~~~~ 116 (253)
T 3g5l_A 111 VVLSSL 116 (253)
T ss_dssp EEEEES
T ss_pred EEEEch
Confidence 888754
No 118
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=95.71 E-value=0.0057 Score=57.31 Aligned_cols=45 Identities=20% Similarity=0.216 Sum_probs=35.4
Q ss_pred CCCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHh
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWW 399 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~ 399 (488)
.+.+|||++||.|.+.+.+.+. + .-..|+++|+|+.+.+..+.+.
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~-~~~~v~gvDis~~~l~~A~~~~ 97 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRR-SLRQVIASDVDPAPLELAAKNL 97 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGG-GEEEEEEEESCHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhcc-CCCeEEEEECCHHHHHHHHHHH
Confidence 4578999999999999988765 2 1234789999999988777543
No 119
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=95.69 E-value=0.017 Score=52.92 Aligned_cols=77 Identities=21% Similarity=0.222 Sum_probs=53.2
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccCh-hhHHHhhh--c
Q 011347 352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT-KKFESLIH--K 428 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~-~~Ie~l~~--~ 428 (488)
++.+.+||||-||.||++..+.+.+- .|++||+++.+ ...+..++.+|+++... +.+..... .
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~~~---~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 88 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSLAR---KIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRALREEG 88 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTTCS---EEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEeecCCHHHHHHHHcCC---cEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHHhhccc
Confidence 35678999999999999999887753 37899999852 12244467899988653 22322221 0
Q ss_pred cCCccEEEecCCCC
Q 011347 429 LGSIDFVICQNSVP 442 (488)
Q Consensus 429 ~g~~DLVIGGpPCQ 442 (488)
.+.||+|+.-.+++
T Consensus 89 ~~~~D~Vlsd~~~~ 102 (191)
T 3dou_A 89 IEKVDDVVSDAMAK 102 (191)
T ss_dssp CSSEEEEEECCCCC
T ss_pred CCcceEEecCCCcC
Confidence 14899999876654
No 120
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=95.68 E-value=0.019 Score=51.33 Aligned_cols=81 Identities=20% Similarity=0.069 Sum_probs=54.2
Q ss_pred chhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChh
Q 011347 341 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK 420 (488)
Q Consensus 341 i~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~ 420 (488)
+...+..+.. .+.+.+|||+-||.|.+...+.+.|.+ ++++|+++......+. .+.....+..+|+.++.
T Consensus 34 ~~~~~~~l~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~---v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~~-- 103 (218)
T 3ou2_A 34 APAALERLRA-GNIRGDVLELASGTGYWTRHLSGLADR---VTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDWT-- 103 (218)
T ss_dssp HHHHHHHHTT-TTSCSEEEEESCTTSHHHHHHHHHSSE---EEEEESCHHHHHHHGG----GCCTTEEEEECCTTSCC--
T ss_pred HHHHHHHHhc-CCCCCeEEEECCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHh----cCCCCeEEEecccccCC--
Confidence 3334444443 334569999999999999999988864 6789999998777654 11123335567776651
Q ss_pred hHHHhhhccCCccEEEec
Q 011347 421 KFESLIHKLGSIDFVICQ 438 (488)
Q Consensus 421 ~Ie~l~~~~g~~DLVIGG 438 (488)
..+.+|+|+..
T Consensus 104 -------~~~~~D~v~~~ 114 (218)
T 3ou2_A 104 -------PDRQWDAVFFA 114 (218)
T ss_dssp -------CSSCEEEEEEE
T ss_pred -------CCCceeEEEEe
Confidence 12467887754
No 121
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=95.67 E-value=0.016 Score=58.98 Aligned_cols=78 Identities=13% Similarity=0.046 Sum_probs=53.6
Q ss_pred CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC---CcceeccccccChhhHHHhhhccCC
Q 011347 355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG---ELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g---~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
+.+||||+||.|.+++.+.+.+-. ..|+++|+++.+.+..+.+....+... ..+..+|+.+.- ..+.
T Consensus 223 ~~~VLDlGcG~G~~s~~la~~~p~-~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~---------~~~~ 292 (375)
T 4dcm_A 223 EGEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV---------EPFR 292 (375)
T ss_dssp CSEEEEETCTTCHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTC---------CTTC
T ss_pred CCeEEEEeCcchHHHHHHHHHCCC-CEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccC---------CCCC
Confidence 378999999999999999888411 237899999999888887664332110 112456665411 1257
Q ss_pred ccEEEecCCCC
Q 011347 432 IDFVICQNSVP 442 (488)
Q Consensus 432 ~DLVIGGpPCQ 442 (488)
||+|+..||..
T Consensus 293 fD~Ii~nppfh 303 (375)
T 4dcm_A 293 FNAVLCNPPFH 303 (375)
T ss_dssp EEEEEECCCC-
T ss_pred eeEEEECCCcc
Confidence 99999999864
No 122
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=95.66 E-value=0.032 Score=55.52 Aligned_cols=85 Identities=13% Similarity=0.101 Sum_probs=56.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+-+|||++||.||.+..+-+.+=. ..|+++|+|+.+.+..+.+....+ ....++.+|..++.. .+..+ ..+.||
T Consensus 26 ~g~~vLD~g~G~G~~s~~la~~~~~-~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~-~l~~~--g~~~~D 100 (301)
T 1m6y_A 26 DEKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADF-LLKTL--GIEKVD 100 (301)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHH-HHHHT--TCSCEE
T ss_pred CCCEEEEEeCCcCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHH-HHHhc--CCCCCC
Confidence 4568999999999999988765201 237899999999988877554322 223356677765531 11110 124799
Q ss_pred EEEecCCCCC
Q 011347 434 FVICQNSVPQ 443 (488)
Q Consensus 434 LVIGGpPCQ~ 443 (488)
.|+--+||..
T Consensus 101 ~Vl~D~gvSs 110 (301)
T 1m6y_A 101 GILMDLGVST 110 (301)
T ss_dssp EEEEECSCCH
T ss_pred EEEEcCccch
Confidence 9999888853
No 123
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=95.60 E-value=0.031 Score=51.50 Aligned_cols=86 Identities=15% Similarity=0.086 Sum_probs=58.7
Q ss_pred ccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhcc
Q 011347 350 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 429 (488)
Q Consensus 350 ~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~ 429 (488)
.....+.+|||+-||.|.+...|.+.|. .|+++|+++.+....+... ......++.+|+.++....- ....
T Consensus 52 ~~~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~---~~~~ 122 (245)
T 3ggd_A 52 LLFNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKEN---TAANISYRLLDGLVPEQAAQ---IHSE 122 (245)
T ss_dssp TTSCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHS---CCTTEEEEECCTTCHHHHHH---HHHH
T ss_pred hccCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhC---cccCceEEECcccccccccc---cccc
Confidence 3345678999999999999999999886 3689999999888776643 12233456788877643211 1011
Q ss_pred CCccEEEecCCCCCc
Q 011347 430 GSIDFVICQNSVPQI 444 (488)
Q Consensus 430 g~~DLVIGGpPCQ~F 444 (488)
..+|+|+...-..-+
T Consensus 123 ~~~d~v~~~~~~~~~ 137 (245)
T 3ggd_A 123 IGDANIYMRTGFHHI 137 (245)
T ss_dssp HCSCEEEEESSSTTS
T ss_pred cCccEEEEcchhhcC
Confidence 258999977655443
No 124
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=95.59 E-value=0.027 Score=52.87 Aligned_cols=83 Identities=14% Similarity=0.158 Sum_probs=58.6
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccC
Q 011347 352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLG 430 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g 430 (488)
.+.+.+|||+-||.|.+...+.+.+. ..|+++|+++......+......+..+ ..+..+|+.++... .+
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--------~~ 113 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFR--------NE 113 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTTCS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC--------TT
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCC--------CC
Confidence 34678999999999999999988853 247899999998887776554332222 33567888766411 25
Q ss_pred CccEEEecCCCCCc
Q 011347 431 SIDFVICQNSVPQI 444 (488)
Q Consensus 431 ~~DLVIGGpPCQ~F 444 (488)
.||+|+.......+
T Consensus 114 ~fD~i~~~~~~~~~ 127 (267)
T 3kkz_A 114 ELDLIWSEGAIYNI 127 (267)
T ss_dssp CEEEEEESSCGGGT
T ss_pred CEEEEEEcCCceec
Confidence 79999977655433
No 125
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=95.59 E-value=0.023 Score=50.91 Aligned_cols=71 Identities=14% Similarity=0.113 Sum_probs=51.1
Q ss_pred CCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 355 GLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
+.+|||+.||.|.+...+... +. .++++|+++.+.+..+.+....+.....+..+|+.++.. .+.+
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~~~~ 133 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEA---HFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS---------EPPF 133 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC---------CSCE
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCc---------cCCc
Confidence 568999999999999888775 43 378999999998888776544332223355677765542 1479
Q ss_pred cEEEe
Q 011347 433 DFVIC 437 (488)
Q Consensus 433 DLVIG 437 (488)
|+|+.
T Consensus 134 D~i~~ 138 (207)
T 1jsx_A 134 DGVIS 138 (207)
T ss_dssp EEEEC
T ss_pred CEEEE
Confidence 99984
No 126
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.57 E-value=0.013 Score=47.58 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=33.7
Q ss_pred hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhccc
Q 011347 2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQI 42 (488)
Q Consensus 2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~~ 42 (488)
+++..|++|||++++|..|+.+|+-+ ++.-++.++..+.
T Consensus 31 e~I~~L~eMGF~r~~a~~AL~~~~~n--ve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 31 EQIQKLVAMGFDRTQVEVALAAADDD--LTVAVEILMSQSG 69 (73)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHTSC--HHHHHHHHHTCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHHCCC
Confidence 46789999999999999999999975 7777899987663
No 127
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=95.55 E-value=0.026 Score=55.36 Aligned_cols=84 Identities=21% Similarity=0.212 Sum_probs=58.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||+.||.|++...+.+.+-+-..|+++|+++...+..+......+.....+..+|+.+... ..+.+|
T Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~--------~~~~fD 146 (317)
T 1dl5_A 75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP--------EFSPYD 146 (317)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG--------GGCCEE
T ss_pred CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc--------cCCCeE
Confidence 567999999999999988887654212378999999988887776544322233355677765432 125799
Q ss_pred EEEecCCCCCcc
Q 011347 434 FVICQNSVPQIP 445 (488)
Q Consensus 434 LVIGGpPCQ~FS 445 (488)
+|+...++..+.
T Consensus 147 ~Iv~~~~~~~~~ 158 (317)
T 1dl5_A 147 VIFVTVGVDEVP 158 (317)
T ss_dssp EEEECSBBSCCC
T ss_pred EEEEcCCHHHHH
Confidence 999888876553
No 128
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=95.52 E-value=0.015 Score=65.86 Aligned_cols=104 Identities=13% Similarity=0.087 Sum_probs=60.5
Q ss_pred hhhhcccCcchhhhccc-----cccCCCCCcccccCCCCChhHHHHHHc-C-CeeeeEEEeeCCHHHHHHH--HHHhhh-
Q 011347 332 LRHCFQTDTLGYHLSVL-----KSMFPGGLTMLSVFSGIGGAEVTLHRL-G-IKLKGVISIETSETNRRIL--KRWWES- 401 (488)
Q Consensus 332 Lgnsfqvdti~~~lsvL-----K~~fp~~itVLDLFSGiGGlslGL~~a-G-i~~k~vvsVEid~~a~~t~--~~~~~~- 401 (488)
.|..+....++..+.-+ .+..+.+.+|+|.+||.|++.+++.+. + ..-..++++|||+.+.+.. +.+...
T Consensus 294 ~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN 373 (878)
T 3s1s_A 294 EGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFP 373 (878)
T ss_dssp CBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTST
T ss_pred CceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHh
Confidence 34445444444443222 333456789999999999999887653 2 2123478999999988776 432211
Q ss_pred ---cCCCCCcceeccccccChhhHHHhhhccCCccEEEecCCCC
Q 011347 402 ---SGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP 442 (488)
Q Consensus 402 ---~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ 442 (488)
+......+..+|....+.. ..+.||+|+|=||=-
T Consensus 374 ~LlhGi~~~~I~~dD~L~~~~~-------~~~kFDVVIgNPPYg 410 (878)
T 3s1s_A 374 QLVSSNNAPTITGEDVCSLNPE-------DFANVSVVVMNPPYV 410 (878)
T ss_dssp TTCBTTBCCEEECCCGGGCCGG-------GGTTEEEEEECCBCC
T ss_pred hhhcCCCcceEEecchhccccc-------ccCCCCEEEECCCcc
Confidence 0000112233444332211 236899999999973
No 129
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=95.52 E-value=0.022 Score=51.37 Aligned_cols=79 Identities=18% Similarity=0.112 Sum_probs=55.1
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
..+.+|||+-||.|.+...+.+.+-+-..++++|+++...+..+......+.....+..+|+.++.. ..+.+
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~f 107 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPL--------PDNTV 107 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSS--------CSSCE
T ss_pred CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCC--------CCCCe
Confidence 4567999999999999999988761112478999999988888776544332333356678776541 12468
Q ss_pred cEEEecC
Q 011347 433 DFVICQN 439 (488)
Q Consensus 433 DLVIGGp 439 (488)
|+|+...
T Consensus 108 D~v~~~~ 114 (219)
T 3dh0_A 108 DFIFMAF 114 (219)
T ss_dssp EEEEEES
T ss_pred eEEEeeh
Confidence 9998654
No 130
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=95.51 E-value=0.019 Score=54.45 Aligned_cols=79 Identities=18% Similarity=0.156 Sum_probs=55.3
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccC
Q 011347 352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLG 430 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g 430 (488)
-+.+.+|||+-||.|.+...|.+.|.+ ++++|+++......+......+. ....++.+|+.++... ..+
T Consensus 66 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~ 135 (285)
T 4htf_A 66 GPQKLRVLDAGGGEGQTAIKMAERGHQ---VILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH-------LET 135 (285)
T ss_dssp CSSCCEEEEETCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGG-------CSS
T ss_pred CCCCCEEEEeCCcchHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhh-------cCC
Confidence 345789999999999999999999874 67899999988877765433221 1222456777665420 125
Q ss_pred CccEEEecCC
Q 011347 431 SIDFVICQNS 440 (488)
Q Consensus 431 ~~DLVIGGpP 440 (488)
.||+|+....
T Consensus 136 ~fD~v~~~~~ 145 (285)
T 4htf_A 136 PVDLILFHAV 145 (285)
T ss_dssp CEEEEEEESC
T ss_pred CceEEEECch
Confidence 7999997543
No 131
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=95.50 E-value=0.045 Score=50.47 Aligned_cols=80 Identities=19% Similarity=0.108 Sum_probs=55.0
Q ss_pred CCCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
.+.+|||+-||.|.+...+.+. +. .++++|+++.+....+.+....+.....++.+|+.++. ..+ ..+.
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~---~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~-----~~~-~~~~ 108 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDI---NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT-----DVF-EPGE 108 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHH-----HHC-CTTS
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCC---CEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHH-----hhc-CcCC
Confidence 4578999999999999998776 43 47899999999887776554333223345667877632 111 1256
Q ss_pred ccEEEecCCCC
Q 011347 432 IDFVICQNSVP 442 (488)
Q Consensus 432 ~DLVIGGpPCQ 442 (488)
+|.|+-.+|+.
T Consensus 109 ~d~v~~~~~~p 119 (213)
T 2fca_A 109 VKRVYLNFSDP 119 (213)
T ss_dssp CCEEEEESCCC
T ss_pred cCEEEEECCCC
Confidence 89888776654
No 132
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=95.49 E-value=0.027 Score=53.60 Aligned_cols=79 Identities=18% Similarity=0.185 Sum_probs=54.3
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccCC
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
.+.+|||+.||.|.+++.+.+. |-. ..++++|+++.+.+..+.+....+. ....+..+|+.+.- ..+.
T Consensus 112 ~~~~VLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~ 181 (277)
T 1o54_A 112 EGDRIIDTGVGSGAMCAVLARAVGSS-GKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF---------DEKD 181 (277)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHTTTT-CEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC---------SCCS
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcc---------cCCc
Confidence 4678999999999999988876 421 2478999999998888776543321 11223456665431 1146
Q ss_pred ccEEEecCCCC
Q 011347 432 IDFVICQNSVP 442 (488)
Q Consensus 432 ~DLVIGGpPCQ 442 (488)
+|+|+-.+|+.
T Consensus 182 ~D~V~~~~~~~ 192 (277)
T 1o54_A 182 VDALFLDVPDP 192 (277)
T ss_dssp EEEEEECCSCG
T ss_pred cCEEEECCcCH
Confidence 99999887765
No 133
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.47 E-value=0.012 Score=46.41 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=34.8
Q ss_pred hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhccccC
Q 011347 2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFL 44 (488)
Q Consensus 2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~~~~ 44 (488)
+++.+|++|||++++|..|+..|+- .++.-++.|+..+...
T Consensus 11 ~~I~~L~~MGF~~~~a~~AL~~~~~--nve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 11 KALKHITEMGFSKEASRQALMDNGN--NLEAALNVLLTSNKQK 51 (63)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHTTS--CHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC--CHHHHHHHHHHCCCCc
Confidence 4568999999999999999999987 4888899999876433
No 134
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.47 E-value=0.011 Score=46.30 Aligned_cols=38 Identities=26% Similarity=0.389 Sum_probs=33.4
Q ss_pred hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347 2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 41 (488)
Q Consensus 2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~ 41 (488)
+++.+|++|||+++++..|+..++.+ ++.-++.|+...
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~~n--ve~A~e~L~~~~ 48 (63)
T 2dak_A 11 DCVTTIVSMGFSRDQALKALRATNNS--LERAVDWIFSHI 48 (63)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTSC--SHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 46789999999999999999999874 888889998865
No 135
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=95.43 E-value=0.032 Score=57.61 Aligned_cols=83 Identities=14% Similarity=0.102 Sum_probs=55.4
Q ss_pred CCCcccccCCCCChhHHHHHHcC------------CeeeeEEEeeCCHHHHHHHHHHhhhcCCC--CCcceeccccccCh
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLG------------IKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTT 419 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aG------------i~~k~vvsVEid~~a~~t~~~~~~~~n~~--g~lv~~~DI~~L~~ 419 (488)
.+.+|+|..||.||+.+.+.+.- +....++++|+++.+.++.+.+..-++.. ...+..+|.-....
T Consensus 171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~ 250 (445)
T 2okc_A 171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP 250 (445)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC
T ss_pred CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCcc
Confidence 46789999999999988775420 01124789999999888777654333221 22355566543321
Q ss_pred hhHHHhhhccCCccEEEecCCCCCcc
Q 011347 420 KKFESLIHKLGSIDFVICQNSVPQIP 445 (488)
Q Consensus 420 ~~Ie~l~~~~g~~DLVIGGpPCQ~FS 445 (488)
.+.||+|++-||.....
T Consensus 251 ---------~~~fD~Iv~NPPf~~~~ 267 (445)
T 2okc_A 251 ---------STLVDVILANPPFGTRP 267 (445)
T ss_dssp ---------SSCEEEEEECCCSSCCC
T ss_pred ---------cCCcCEEEECCCCCCcc
Confidence 24799999999987654
No 136
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=95.40 E-value=0.034 Score=53.04 Aligned_cols=76 Identities=17% Similarity=0.081 Sum_probs=52.7
Q ss_pred CCCCcccccCCCCChhHHHHHHc---CCeeeeEEEeeCCHHHHHHHHHHhhhc-CCCCCcceeccccccChhhHHHhhhc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESS-GQTGELVQIEDIQALTTKKFESLIHK 428 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~a---Gi~~k~vvsVEid~~a~~t~~~~~~~~-n~~g~lv~~~DI~~L~~~~Ie~l~~~ 428 (488)
..+.+|||+.||.|++...+.+. +. .++++|+++.+.+..+.+.... +.....+..+|+.+.-.
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~--------- 176 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKG---TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS--------- 176 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSS---EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC---------
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCc---------
Confidence 35678999999999999988876 44 3689999999988887765432 21222345567654211
Q ss_pred cCCccEEEecCC
Q 011347 429 LGSIDFVICQNS 440 (488)
Q Consensus 429 ~g~~DLVIGGpP 440 (488)
.+.||+|+...|
T Consensus 177 ~~~fD~Vi~~~~ 188 (275)
T 1yb2_A 177 DQMYDAVIADIP 188 (275)
T ss_dssp SCCEEEEEECCS
T ss_pred CCCccEEEEcCc
Confidence 146999998554
No 137
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=95.40 E-value=0.02 Score=55.35 Aligned_cols=94 Identities=14% Similarity=0.145 Sum_probs=56.9
Q ss_pred hhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhc-------CCCCCcceeccc
Q 011347 342 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS-------GQTGELVQIEDI 414 (488)
Q Consensus 342 ~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~-------n~~g~lv~~~DI 414 (488)
...+..+....+.+.+|||+-||.|++...+.+.+. ..++++|+++...+..+...... +.....++.+|+
T Consensus 22 ~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~ 99 (313)
T 3bgv_A 22 GEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRI--NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADS 99 (313)
T ss_dssp HHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCT
T ss_pred HHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecc
Confidence 334444444445678999999999999998887653 34789999999887776654321 111223566787
Q ss_pred cccChhhHHHhhhccCCccEEEecC
Q 011347 415 QALTTKKFESLIHKLGSIDFVICQN 439 (488)
Q Consensus 415 ~~L~~~~Ie~l~~~~g~~DLVIGGp 439 (488)
.++.... .+....+.||+|+...
T Consensus 100 ~~~~~~~--~~~~~~~~fD~V~~~~ 122 (313)
T 3bgv_A 100 SKELLID--KFRDPQMCFDICSCQF 122 (313)
T ss_dssp TTSCSTT--TCSSTTCCEEEEEEET
T ss_pred cccchhh--hcccCCCCEEEEEEec
Confidence 7654100 0000124688888654
No 138
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=95.40 E-value=0.047 Score=50.45 Aligned_cols=80 Identities=10% Similarity=0.076 Sum_probs=57.1
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
+.+.+|||+-||.|.+...+.+.+-. .|+++|+++......+......+... ..++.+|+.++... .+.
T Consensus 45 ~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--------~~~ 114 (257)
T 3f4k_A 45 TDDAKIADIGCGTGGQTLFLADYVKG--QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQ--------NEE 114 (257)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCCS--EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSC--------TTC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCC--------CCC
Confidence 45679999999999999999888632 47899999998888777654433222 33566888766421 257
Q ss_pred ccEEEecCCCC
Q 011347 432 IDFVICQNSVP 442 (488)
Q Consensus 432 ~DLVIGGpPCQ 442 (488)
||+|+......
T Consensus 115 fD~v~~~~~l~ 125 (257)
T 3f4k_A 115 LDLIWSEGAIY 125 (257)
T ss_dssp EEEEEEESCSC
T ss_pred EEEEEecChHh
Confidence 99998765444
No 139
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=95.39 E-value=0.023 Score=52.22 Aligned_cols=75 Identities=16% Similarity=0.011 Sum_probs=52.5
Q ss_pred CcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccCCccE
Q 011347 356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSIDF 434 (488)
Q Consensus 356 itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL 434 (488)
.+|||+-||.|.+...|.+.|.. |+++|+++.+.+..+......+. ....+..+|+.++..+ +.||+
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---------~~fD~ 135 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPERF---VVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPT---------ELFDL 135 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTEE---EEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCS---------SCEEE
T ss_pred CCEEEeCCCCCHHHHHHHhCCCe---EEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCC---------CCeeE
Confidence 49999999999999999887753 78999999988887765432111 1122556777765432 36898
Q ss_pred EEecCCCC
Q 011347 435 VICQNSVP 442 (488)
Q Consensus 435 VIGGpPCQ 442 (488)
|+......
T Consensus 136 v~~~~~l~ 143 (235)
T 3lcc_A 136 IFDYVFFC 143 (235)
T ss_dssp EEEESSTT
T ss_pred EEEChhhh
Confidence 88655443
No 140
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=95.38 E-value=0.04 Score=50.61 Aligned_cols=76 Identities=12% Similarity=0.030 Sum_probs=52.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+.+|||+.||.|.+...+.+.+. .++++|+++...+..+.+....+. ....+..+|+.+... ..+.+
T Consensus 91 ~~~~vldiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~ 159 (248)
T 2yvl_A 91 KEKRVLEFGTGSGALLAVLSEVAG---EVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV--------PEGIF 159 (248)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC--------CTTCB
T ss_pred CCCEEEEeCCCccHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc--------CCCcc
Confidence 467899999999999988887754 478999999988888776543321 122244566655320 11479
Q ss_pred cEEEecCC
Q 011347 433 DFVICQNS 440 (488)
Q Consensus 433 DLVIGGpP 440 (488)
|+|+..+|
T Consensus 160 D~v~~~~~ 167 (248)
T 2yvl_A 160 HAAFVDVR 167 (248)
T ss_dssp SEEEECSS
T ss_pred cEEEECCc
Confidence 99998665
No 141
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=95.37 E-value=0.017 Score=56.48 Aligned_cols=45 Identities=20% Similarity=0.350 Sum_probs=38.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhh
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 401 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~ 401 (488)
.+-+|||+|||.|...+++.++|.+ ++++|+++.+..+.+.....
T Consensus 235 ~~~~vlD~f~GsGt~~~~a~~~g~~---~~g~e~~~~~~~~a~~r~~~ 279 (297)
T 2zig_A 235 VGDVVLDPFAGTGTTLIAAARWGRR---ALGVELVPRYAQLAKERFAR 279 (297)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHcCCe---EEEEeCCHHHHHHHHHHHHH
Confidence 4568999999999999999999964 68999999998887765543
No 142
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=95.36 E-value=0.034 Score=50.74 Aligned_cols=75 Identities=20% Similarity=0.126 Sum_probs=54.4
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhc------------CCCCCcceeccccccChh
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS------------GQTGELVQIEDIQALTTK 420 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~------------n~~g~lv~~~DI~~L~~~ 420 (488)
+.+.+|||+=||.|....-|.+.|++ |++||+++.+.+..+...... ......++.+|+.++...
T Consensus 21 ~~~~~vLD~GCG~G~~~~~la~~g~~---V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLSGQGYH---VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHCCE---EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred CCCCEEEEeCCCCcHhHHHHHHCCCe---EEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 46789999999999999999988974 789999999988776532110 012333567899888743
Q ss_pred hHHHhhhccCCccEEEe
Q 011347 421 KFESLIHKLGSIDFVIC 437 (488)
Q Consensus 421 ~Ie~l~~~~g~~DLVIG 437 (488)
+. +.||+|+.
T Consensus 98 ~~-------~~fD~v~~ 107 (203)
T 1pjz_A 98 DI-------GHCAAFYD 107 (203)
T ss_dssp HH-------HSEEEEEE
T ss_pred cC-------CCEEEEEE
Confidence 21 36899885
No 143
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.35 E-value=0.011 Score=46.88 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=32.7
Q ss_pred hhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347 3 ITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 41 (488)
Q Consensus 3 k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~ 41 (488)
.+-.|+.|||++++|..|+..+|.+ |+.-+|-||+--
T Consensus 22 ~V~~LvsMGFs~~qA~kALKat~~N--vErAaDWLFSH~ 58 (63)
T 1wgn_A 22 CVETVVNMGYSYECVLRAMKKKGEN--IEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHCSC--HHHHHHHHHHHS
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 4567999999999999999999985 889999999754
No 144
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=95.35 E-value=0.039 Score=50.24 Aligned_cols=84 Identities=18% Similarity=0.169 Sum_probs=57.6
Q ss_pred CCCcccccCCCCChhHHHHHHc---CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL 429 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a---Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~ 429 (488)
.+.+|||+-||.|+.+..|.++ |. .++++|+++......+.++...+... ..++.+|+.+. +..+....
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~~ 130 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGG---RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDS----LQQIENEK 130 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHHHHHTT
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHhcC
Confidence 4578999999999999998876 54 37899999999888887775543322 23455676532 22222222
Q ss_pred -CCccEEEecCCCCCc
Q 011347 430 -GSIDFVICQNSVPQI 444 (488)
Q Consensus 430 -g~~DLVIGGpPCQ~F 444 (488)
+.||+|+-..+|..+
T Consensus 131 ~~~fD~v~~d~~~~~~ 146 (223)
T 3duw_A 131 YEPFDFIFIDADKQNN 146 (223)
T ss_dssp CCCCSEEEECSCGGGH
T ss_pred CCCcCEEEEcCCcHHH
Confidence 579999987776643
No 145
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=95.30 E-value=0.044 Score=51.42 Aligned_cols=82 Identities=21% Similarity=0.226 Sum_probs=57.0
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347 352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
++.+.+|||+-||.|.+...+.+.+-. ..++++|+++......+......+.....+...|+.++.. ..+.
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~ 105 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPD-AEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPF--------EDSS 105 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCS--------CTTC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCC--------CCCC
Confidence 356789999999999999999887311 2478999999988877765543322233355677776542 1257
Q ss_pred ccEEEecCCCC
Q 011347 432 IDFVICQNSVP 442 (488)
Q Consensus 432 ~DLVIGGpPCQ 442 (488)
||+|+.....+
T Consensus 106 fD~v~~~~~l~ 116 (276)
T 3mgg_A 106 FDHIFVCFVLE 116 (276)
T ss_dssp EEEEEEESCGG
T ss_pred eeEEEEechhh
Confidence 99999765443
No 146
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=95.29 E-value=0.036 Score=51.38 Aligned_cols=78 Identities=13% Similarity=0.212 Sum_probs=55.6
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
+.+.+|||+-||.|.+...+.+.|. .++++|+++......+......+.....+..+|+.++.. ..+.|
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~f 88 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF--------PDDSF 88 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCS--------CTTCE
T ss_pred CCCCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCC--------CCCcE
Confidence 3567899999999999999988874 478999999988877765543322233356677766541 12479
Q ss_pred cEEEecCCC
Q 011347 433 DFVICQNSV 441 (488)
Q Consensus 433 DLVIGGpPC 441 (488)
|+|+.....
T Consensus 89 D~v~~~~~l 97 (239)
T 1xxl_A 89 DIITCRYAA 97 (239)
T ss_dssp EEEEEESCG
T ss_pred EEEEECCch
Confidence 999876543
No 147
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=95.29 E-value=0.045 Score=50.58 Aligned_cols=81 Identities=21% Similarity=0.171 Sum_probs=55.4
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhc-CCCCCcceeccccccChhhHHHhhhccC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS-GQTGELVQIEDIQALTTKKFESLIHKLG 430 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~-n~~g~lv~~~DI~~L~~~~Ie~l~~~~g 430 (488)
..+.+|||+.||.|.++..+.++ |-. ..++++|+++...+..+.+.... +.....+..+|+.+.. +. .+
T Consensus 95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~---~~-----~~ 165 (258)
T 2pwy_A 95 APGMRVLEAGTGSGGLTLFLARAVGEK-GLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAE---LE-----EA 165 (258)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCC---CC-----TT
T ss_pred CCCCEEEEECCCcCHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcC---CC-----CC
Confidence 35678999999999999998877 311 24789999999988887765433 2122234567776552 11 14
Q ss_pred CccEEEecCCCC
Q 011347 431 SIDFVICQNSVP 442 (488)
Q Consensus 431 ~~DLVIGGpPCQ 442 (488)
.+|+|+..+|+.
T Consensus 166 ~~D~v~~~~~~~ 177 (258)
T 2pwy_A 166 AYDGVALDLMEP 177 (258)
T ss_dssp CEEEEEEESSCG
T ss_pred CcCEEEECCcCH
Confidence 799999876654
No 148
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=95.29 E-value=0.0081 Score=64.13 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=51.3
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
..+++|||+=||.|-++..|.++|.. |.+||.++.+..+-+.+-...+.....+..+|+. ++... ...+.|
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~ga~---V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~-----~~~~~-~~~~~f 135 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASKGAT---IVGIDFQQENINVCRALAEENPDFAAEFRVGRIE-----EVIAA-LEEGEF 135 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHH-----HHHHH-CCTTSC
T ss_pred CCCCeEEEECCCCcHHHHHHHhCCCE---EEEECCCHHHHHHHHHHHHhcCCCceEEEECCHH-----HHhhh-ccCCCc
Confidence 35689999999999999999999985 6899999999988776543221111112233333 22110 123579
Q ss_pred cEEEec
Q 011347 433 DFVICQ 438 (488)
Q Consensus 433 DLVIGG 438 (488)
|+|++-
T Consensus 136 D~v~~~ 141 (569)
T 4azs_A 136 DLAIGL 141 (569)
T ss_dssp SEEEEE
T ss_pred cEEEEC
Confidence 999863
No 149
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=95.28 E-value=0.038 Score=53.53 Aligned_cols=84 Identities=15% Similarity=0.122 Sum_probs=56.9
Q ss_pred hhhccccccCCCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChh
Q 011347 343 YHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTK 420 (488)
Q Consensus 343 ~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~ 420 (488)
..+..|.. .+.+.+|||+.||.|.+...|.+. |.+ |+++|+++...+..+......+.. ...++.+|+.++.-
T Consensus 107 ~l~~~l~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~- 181 (312)
T 3vc1_A 107 FLMDHLGQ-AGPDDTLVDAGCGRGGSMVMAHRRFGSR---VEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPF- 181 (312)
T ss_dssp HHHTTSCC-CCTTCEEEEESCTTSHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC-
T ss_pred HHHHHhcc-CCCCCEEEEecCCCCHHHHHHHHHcCCE---EEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCC-
Confidence 33444432 245679999999999999998876 754 689999999888777655433222 23356688876541
Q ss_pred hHHHhhhccCCccEEEec
Q 011347 421 KFESLIHKLGSIDFVICQ 438 (488)
Q Consensus 421 ~Ie~l~~~~g~~DLVIGG 438 (488)
..+.||+|+..
T Consensus 182 -------~~~~fD~V~~~ 192 (312)
T 3vc1_A 182 -------DKGAVTASWNN 192 (312)
T ss_dssp -------CTTCEEEEEEE
T ss_pred -------CCCCEeEEEEC
Confidence 11478988853
No 150
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=95.27 E-value=0.015 Score=56.24 Aligned_cols=81 Identities=17% Similarity=0.181 Sum_probs=49.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCH-------HHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHh
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSE-------TNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESL 425 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~-------~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l 425 (488)
.+.+|||++||.|.+++.|-+.|.+ |+++|+++ .+.+..+.+....+... ..++.+|+.++- ..+
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~g~~---V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l----~~~ 155 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASLGLT---VTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQM----PAL 155 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHTTCC---EEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHH----HHH
T ss_pred CcCeEEEeeCccCHHHHHHHHhCCE---EEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHH----Hhh
Confidence 4578999999999999999888853 68999999 66555544321111001 224456654321 111
Q ss_pred hhccCCccEEEecCCC
Q 011347 426 IHKLGSIDFVICQNSV 441 (488)
Q Consensus 426 ~~~~g~~DLVIGGpPC 441 (488)
....+.||+|+--||=
T Consensus 156 ~~~~~~fD~V~~dP~~ 171 (258)
T 2r6z_A 156 VKTQGKPDIVYLDPMY 171 (258)
T ss_dssp HHHHCCCSEEEECCCC
T ss_pred hccCCCccEEEECCCC
Confidence 1101479999987653
No 151
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=95.26 E-value=0.03 Score=51.16 Aligned_cols=78 Identities=15% Similarity=0.105 Sum_probs=56.2
Q ss_pred CCCCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 430 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g 430 (488)
+.+.+|||+-||.|.+...+.+. |. -++++|+++......+....... ...+..+|+.++... +
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~---------~ 108 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPEA---TFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDFE---------E 108 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCCC---------S
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCCC---------C
Confidence 45689999999999999999887 54 36889999998887776543221 233566788766532 4
Q ss_pred CccEEEecCCCCCc
Q 011347 431 SIDFVICQNSVPQI 444 (488)
Q Consensus 431 ~~DLVIGGpPCQ~F 444 (488)
.+|+|+......-+
T Consensus 109 ~fD~v~~~~~l~~~ 122 (234)
T 3dtn_A 109 KYDMVVSALSIHHL 122 (234)
T ss_dssp CEEEEEEESCGGGS
T ss_pred CceEEEEeCccccC
Confidence 79999987644433
No 152
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=95.25 E-value=0.017 Score=56.50 Aligned_cols=76 Identities=12% Similarity=0.108 Sum_probs=49.6
Q ss_pred CcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC---------CCcceeccccccChhhHHHhh
Q 011347 356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT---------GELVQIEDIQALTTKKFESLI 426 (488)
Q Consensus 356 itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~---------g~lv~~~DI~~L~~~~Ie~l~ 426 (488)
.+|||+|||.|..++-|-+.|-+ |++||+++.....++.+....... ...++.+|..++ +
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~~---V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~--------L 158 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA--------L 158 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCC---EEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHH--------S
T ss_pred CEEEEcCCcCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHH--------H
Confidence 78999999999999988888863 789999998766665543221100 011333444332 1
Q ss_pred hc-cCCccEEEecCCCC
Q 011347 427 HK-LGSIDFVICQNSVP 442 (488)
Q Consensus 427 ~~-~g~~DLVIGGpPCQ 442 (488)
.. ...||+|+--||=.
T Consensus 159 ~~~~~~fDvV~lDP~y~ 175 (258)
T 2oyr_A 159 TDITPRPQVVYLDPMFP 175 (258)
T ss_dssp TTCSSCCSEEEECCCCC
T ss_pred HhCcccCCEEEEcCCCC
Confidence 11 13699999988754
No 153
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=95.17 E-value=0.033 Score=49.76 Aligned_cols=69 Identities=16% Similarity=0.100 Sum_probs=51.7
Q ss_pred CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347 355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 434 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL 434 (488)
+.+|||+-||.|.+...|.+.|.+ ++++|+++...+..+... ....++.+|+.++.. .-+.||+
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~--------~~~~fD~ 105 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQ---IEGLEPATRLVELARQTH-----PSVTFHHGTITDLSD--------SPKRWAG 105 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCC---EEEECCCHHHHHHHHHHC-----TTSEEECCCGGGGGG--------SCCCEEE
T ss_pred CCeEEEecCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHHhC-----CCCeEEeCccccccc--------CCCCeEE
Confidence 678999999999999999999874 678999999887776532 233356678776531 1257999
Q ss_pred EEecC
Q 011347 435 VICQN 439 (488)
Q Consensus 435 VIGGp 439 (488)
|+...
T Consensus 106 v~~~~ 110 (203)
T 3h2b_A 106 LLAWY 110 (203)
T ss_dssp EEEES
T ss_pred EEehh
Confidence 98754
No 154
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=95.16 E-value=0.044 Score=50.55 Aligned_cols=77 Identities=16% Similarity=0.123 Sum_probs=54.4
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347 352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
.+.+.+|||+-||.|.+...|.+.|.+ ++++|+++...+..+... ........+..+|+.++.- ..+.
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~--------~~~~ 104 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIARGYR---YIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPL--------PDES 104 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTTTCE---EEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCS--------CTTC
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHCCCE---EEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCC--------CCCC
Confidence 356789999999999999999888753 788999999888777643 1112233356677766541 1246
Q ss_pred ccEEEecCC
Q 011347 432 IDFVICQNS 440 (488)
Q Consensus 432 ~DLVIGGpP 440 (488)
||+|+....
T Consensus 105 fD~v~~~~~ 113 (263)
T 2yqz_A 105 VHGVIVVHL 113 (263)
T ss_dssp EEEEEEESC
T ss_pred eeEEEECCc
Confidence 999987643
No 155
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.16 E-value=0.015 Score=48.40 Aligned_cols=38 Identities=26% Similarity=0.326 Sum_probs=34.1
Q ss_pred hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347 2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 41 (488)
Q Consensus 2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~ 41 (488)
+++..|++|||++++|..|+..++-+ ++.-++.+|..+
T Consensus 31 e~I~~Lv~MGF~~~~A~~AL~~t~gd--ve~A~e~L~sh~ 68 (83)
T 1veg_A 31 ESINQLVYMGFDTVVAEAALRVFGGN--VQLAAQTLAHHG 68 (83)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHTTTC--HHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 47789999999999999999999987 778899999854
No 156
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=95.14 E-value=0.021 Score=51.50 Aligned_cols=72 Identities=11% Similarity=-0.016 Sum_probs=53.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||+-||.|.+...|.+.|. .++++|+++.+....+...... ....+..+|+.++.. .+.||
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~---------~~~fD 116 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPHCK---RLTVIDVMPRAIGRACQRTKRW--SHISWAATDILQFST---------AELFD 116 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGGEE---EEEEEESCHHHHHHHHHHTTTC--SSEEEEECCTTTCCC---------SCCEE
T ss_pred CCCcEEEEcCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcccC--CCeEEEEcchhhCCC---------CCCcc
Confidence 457899999999999999998874 4789999999888877654321 123356788877652 25799
Q ss_pred EEEecC
Q 011347 434 FVICQN 439 (488)
Q Consensus 434 LVIGGp 439 (488)
+|+...
T Consensus 117 ~v~~~~ 122 (216)
T 3ofk_A 117 LIVVAE 122 (216)
T ss_dssp EEEEES
T ss_pred EEEEcc
Confidence 999753
No 157
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=95.11 E-value=0.035 Score=53.25 Aligned_cols=74 Identities=19% Similarity=0.118 Sum_probs=52.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhh-----------------cCCCCCcceeccccc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES-----------------SGQTGELVQIEDIQA 416 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~-----------------~n~~g~lv~~~DI~~ 416 (488)
.+.+|||+=||.|....-|.+.|++ |++||+++.+.+..+..... .......++.+|+.+
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~G~~---V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADRGHT---VVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTTCE---EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCeEEEeCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 5679999999999999999999984 78999999998877542210 001122356688877
Q ss_pred cChhhHHHhhhccCCccEEEe
Q 011347 417 LTTKKFESLIHKLGSIDFVIC 437 (488)
Q Consensus 417 L~~~~Ie~l~~~~g~~DLVIG 437 (488)
+.... .+.||+|+.
T Consensus 145 l~~~~-------~~~FD~V~~ 158 (252)
T 2gb4_A 145 LPRAN-------IGKFDRIWD 158 (252)
T ss_dssp GGGGC-------CCCEEEEEE
T ss_pred CCccc-------CCCEEEEEE
Confidence 65321 257999984
No 158
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=95.07 E-value=0.03 Score=50.74 Aligned_cols=79 Identities=13% Similarity=0.071 Sum_probs=53.8
Q ss_pred hhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhH
Q 011347 343 YHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKF 422 (488)
Q Consensus 343 ~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~I 422 (488)
+.+..+.... .+.+|||+=||.|.+...|.+.|.+ |+++|+++...+..+..+.. +..++.+|+.++..
T Consensus 32 ~~~~~l~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~~~--- 100 (250)
T 2p7i_A 32 FMVRAFTPFF-RPGNLLELGSFKGDFTSRLQEHFND---ITCVEASEEAISHAQGRLKD----GITYIHSRFEDAQL--- 100 (250)
T ss_dssp HHHHHHGGGC-CSSCEEEESCTTSHHHHHHTTTCSC---EEEEESCHHHHHHHHHHSCS----CEEEEESCGGGCCC---
T ss_pred HHHHHHHhhc-CCCcEEEECCCCCHHHHHHHHhCCc---EEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHcCc---
Confidence 3444444433 4568999999999999999988863 68899999988777764321 23345677765521
Q ss_pred HHhhhccCCccEEEec
Q 011347 423 ESLIHKLGSIDFVICQ 438 (488)
Q Consensus 423 e~l~~~~g~~DLVIGG 438 (488)
.+.||+|+..
T Consensus 101 ------~~~fD~v~~~ 110 (250)
T 2p7i_A 101 ------PRRYDNIVLT 110 (250)
T ss_dssp ------SSCEEEEEEE
T ss_pred ------CCcccEEEEh
Confidence 1457777754
No 159
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=95.06 E-value=0.049 Score=50.78 Aligned_cols=93 Identities=14% Similarity=0.198 Sum_probs=61.5
Q ss_pred ccCcchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccc
Q 011347 337 QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA 416 (488)
Q Consensus 337 qvdti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~ 416 (488)
+...+..++..+.. ..+.+|||+-||.|.+...|.+.+. .++++|+++......+......+.....+..+|+.+
T Consensus 22 ~~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~ 96 (260)
T 1vl5_A 22 KGSDLAKLMQIAAL--KGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ 96 (260)
T ss_dssp -CCCHHHHHHHHTC--CSCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C
T ss_pred CHHHHHHHHHHhCC--CCCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHh
Confidence 44455555555432 3567999999999999999988874 478999999988777765443322233456688876
Q ss_pred cChhhHHHhhhccCCccEEEecCCCC
Q 011347 417 LTTKKFESLIHKLGSIDFVICQNSVP 442 (488)
Q Consensus 417 L~~~~Ie~l~~~~g~~DLVIGGpPCQ 442 (488)
+.-. -+.||+|+...-.+
T Consensus 97 l~~~--------~~~fD~V~~~~~l~ 114 (260)
T 1vl5_A 97 MPFT--------DERFHIVTCRIAAH 114 (260)
T ss_dssp CCSC--------TTCEEEEEEESCGG
T ss_pred CCCC--------CCCEEEEEEhhhhH
Confidence 5411 14799998765433
No 160
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=95.01 E-value=0.057 Score=51.84 Aligned_cols=65 Identities=22% Similarity=0.124 Sum_probs=47.5
Q ss_pred cccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-Ccceeccc
Q 011347 349 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDI 414 (488)
Q Consensus 349 K~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI 414 (488)
.++.+.+.+|+|+-||.|-+++.+-+.|-. .-|+++|+++.+....+.+-...+-.. ..+..+|.
T Consensus 10 ~~~v~~g~~VlDIGtGsG~l~i~la~~~~~-~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~ 75 (225)
T 3kr9_A 10 ASFVSQGAILLDVGSDHAYLPIELVERGQI-KSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANG 75 (225)
T ss_dssp HTTSCTTEEEEEETCSTTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSG
T ss_pred HHhCCCCCEEEEeCCCcHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECch
Confidence 344567789999999999999999998843 458899999999988887665433221 12344555
No 161
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=95.01 E-value=0.023 Score=55.18 Aligned_cols=78 Identities=18% Similarity=0.200 Sum_probs=54.6
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcC-----------CCCCcceeccccccChhh
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-----------QTGELVQIEDIQALTTKK 421 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n-----------~~g~lv~~~DI~~L~~~~ 421 (488)
+.+.+||||.||.|++...+.+.|. .-+.+||+|+...+..+.++ ..+ .....++.+|..+.
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~--~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~---- 146 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEF---- 146 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHH----
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHH----
Confidence 4567899999999999998887753 45789999999999888876 221 11122344555422
Q ss_pred HHHhhhccCCccEEEecCCC
Q 011347 422 FESLIHKLGSIDFVICQNSV 441 (488)
Q Consensus 422 Ie~l~~~~g~~DLVIGGpPC 441 (488)
+. . .+.+|+|+.-+|+
T Consensus 147 l~---~-~~~fD~Ii~d~~~ 162 (281)
T 1mjf_A 147 IK---N-NRGFDVIIADSTD 162 (281)
T ss_dssp HH---H-CCCEEEEEEECCC
T ss_pred hc---c-cCCeeEEEECCCC
Confidence 11 1 3579999988876
No 162
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=95.00 E-value=0.047 Score=47.34 Aligned_cols=82 Identities=13% Similarity=0.136 Sum_probs=52.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||+.||.|.+...+.+.. +-..++++|+++...+..+.+....+....++..+|..+ .++ ...+.+|
T Consensus 25 ~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~----~~~---~~~~~~D 96 (178)
T 3hm2_A 25 PHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPR----AFD---DVPDNPD 96 (178)
T ss_dssp TTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTG----GGG---GCCSCCS
T ss_pred CCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHh----hhh---ccCCCCC
Confidence 45789999999999999887762 113478999999988887765543332212234455432 121 1116799
Q ss_pred EEEecCCCCC
Q 011347 434 FVICQNSVPQ 443 (488)
Q Consensus 434 LVIGGpPCQ~ 443 (488)
+|+.+.+...
T Consensus 97 ~i~~~~~~~~ 106 (178)
T 3hm2_A 97 VIFIGGGLTA 106 (178)
T ss_dssp EEEECC-TTC
T ss_pred EEEECCcccH
Confidence 9997665543
No 163
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=94.98 E-value=0.025 Score=52.68 Aligned_cols=79 Identities=13% Similarity=0.088 Sum_probs=52.5
Q ss_pred CCCCcccccCCCCChhHHHHHH--cCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHR--LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 430 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~--aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g 430 (488)
+.+.+|||+-||.|.+++.|.. .|. -|+++|+++.+....+.+....+.....++.+|+.++... ....+
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~~~ 140 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHL---HVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR-----KDVRE 140 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC-----TTTTT
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhccc-----ccccC
Confidence 3567899999999988887774 343 3789999999888887765544332333556776554310 00125
Q ss_pred CccEEEecC
Q 011347 431 SIDFVICQN 439 (488)
Q Consensus 431 ~~DLVIGGp 439 (488)
.||+|+...
T Consensus 141 ~fD~V~~~~ 149 (240)
T 1xdz_A 141 SYDIVTARA 149 (240)
T ss_dssp CEEEEEEEC
T ss_pred CccEEEEec
Confidence 799999644
No 164
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=94.95 E-value=0.075 Score=48.11 Aligned_cols=78 Identities=8% Similarity=0.026 Sum_probs=52.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-----CCcceeccccccChhhHHHhhhc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-----GELVQIEDIQALTTKKFESLIHK 428 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-----g~lv~~~DI~~L~~~~Ie~l~~~ 428 (488)
.+.+|||+-||.|.+...|.+.|-. ..++++|+++.+.+..+......+.. ...+..+|+..+.. .
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--------~ 99 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFF-EQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK--------R 99 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTC-SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG--------G
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCC-CEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc--------c
Confidence 4568999999999999999987632 34789999999988887755322211 12345567654332 1
Q ss_pred cCCccEEEecCC
Q 011347 429 LGSIDFVICQNS 440 (488)
Q Consensus 429 ~g~~DLVIGGpP 440 (488)
.+.||+|+....
T Consensus 100 ~~~fD~v~~~~~ 111 (217)
T 3jwh_A 100 FHGYDAATVIEV 111 (217)
T ss_dssp GCSCSEEEEESC
T ss_pred CCCcCEEeeHHH
Confidence 257888885543
No 165
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=94.95 E-value=0.064 Score=48.52 Aligned_cols=46 Identities=11% Similarity=0.030 Sum_probs=37.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhh
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 400 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~ 400 (488)
.+.+|||+-||.|.+...|.+.|-. ..++++|+++.+.+..+....
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~ 74 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDKSF-EQITGVDVSYSVLERAKDRLK 74 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTSTTC-CEEEEEESCHHHHHHHHHHHT
T ss_pred CCCEEEEecCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHHHH
Confidence 4578999999999999999987732 347899999999888877553
No 166
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=94.94 E-value=0.031 Score=53.32 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=52.8
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
+.+.+|||+-||.|...+.+..+.=. .-|+++|+++.+....+.+....+..+..++.+|+.++.... ...+.|
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~-----~~~~~f 152 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPE-LELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREA-----GHREAY 152 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTST-----TTTTCE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhccc-----ccCCCc
Confidence 45789999999999888877765211 237899999999988887665443323335566665543210 012579
Q ss_pred cEEEe
Q 011347 433 DFVIC 437 (488)
Q Consensus 433 DLVIG 437 (488)
|+|+.
T Consensus 153 D~I~s 157 (249)
T 3g89_A 153 ARAVA 157 (249)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 99985
No 167
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=94.93 E-value=0.025 Score=45.66 Aligned_cols=38 Identities=26% Similarity=0.423 Sum_probs=33.5
Q ss_pred hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347 2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 41 (488)
Q Consensus 2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~ 41 (488)
+++.+|++|||++++|..|+..+|. .++.-++.|+..+
T Consensus 31 ~~v~~L~~MGF~~~~a~~AL~~t~~--nve~Ave~L~~~~ 68 (73)
T 1wiv_A 31 SSVDTLLSFGFAEDVARKALKASGG--DIEKATDWVFNNS 68 (73)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTS--CHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC--CHHHHHHHHHhCC
Confidence 4678999999999999999999997 6788889998765
No 168
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=94.93 E-value=0.083 Score=50.90 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=37.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeC-CHHHHHHHHHHh
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIET-SETNRRILKRWW 399 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEi-d~~a~~t~~~~~ 399 (488)
.+.+||||.||.|.+++.+.+.|. ..|+++|+ ++.+....+.+.
T Consensus 79 ~~~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~ 123 (281)
T 3bzb_A 79 AGKTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNI 123 (281)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHH
Confidence 456899999999999999999885 24789999 899988887765
No 169
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=94.92 E-value=0.036 Score=50.55 Aligned_cols=74 Identities=16% Similarity=0.140 Sum_probs=51.8
Q ss_pred cCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccC
Q 011347 351 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 430 (488)
Q Consensus 351 ~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g 430 (488)
..+.+.+|||+-||.|.+...+.+. . .++++|+++...+..+......+ ....+...|+.++.. .+
T Consensus 30 ~~~~~~~vLdiG~G~G~~~~~l~~~-~---~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~---------~~ 95 (243)
T 3d2l_A 30 QVEPGKRIADIGCGTGTATLLLADH-Y---EVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRELEL---------PE 95 (243)
T ss_dssp HSCTTCEEEEESCTTCHHHHHHTTT-S---EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGCCC---------SS
T ss_pred HcCCCCeEEEecCCCCHHHHHHhhC-C---eEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhcCC---------CC
Confidence 3445689999999999999888877 3 47899999998888776554322 223345677766531 14
Q ss_pred CccEEEec
Q 011347 431 SIDFVICQ 438 (488)
Q Consensus 431 ~~DLVIGG 438 (488)
.+|+|+..
T Consensus 96 ~fD~v~~~ 103 (243)
T 3d2l_A 96 PVDAITIL 103 (243)
T ss_dssp CEEEEEEC
T ss_pred CcCEEEEe
Confidence 68888854
No 170
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=94.91 E-value=0.025 Score=52.30 Aligned_cols=76 Identities=20% Similarity=0.111 Sum_probs=51.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||+-||.|.+...|.+.+. ..++++|+++.+.+..+......+.....++..|+.++.. ..+.||
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~fD 148 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP--------EPDSYD 148 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC--------CSSCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCC--------CCCCEE
Confidence 468999999999999998877763 3478999999998887765433211111244566665542 124699
Q ss_pred EEEecC
Q 011347 434 FVICQN 439 (488)
Q Consensus 434 LVIGGp 439 (488)
+|+...
T Consensus 149 ~v~~~~ 154 (241)
T 2ex4_A 149 VIWIQW 154 (241)
T ss_dssp EEEEES
T ss_pred EEEEcc
Confidence 998553
No 171
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=94.91 E-value=0.024 Score=39.65 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=23.2
Q ss_pred hhhhhHHhcCCCHHHHHHHHHHhCCC
Q 011347 2 EITLQLLEMGFSENQVSLAIEKFGSK 27 (488)
Q Consensus 2 ~k~~~l~~mgf~~~e~~~ai~~~g~~ 27 (488)
+++..|++|||+++++..|+..|+-+
T Consensus 6 ~~i~~L~~mGf~~~~a~~AL~~~~~n 31 (40)
T 1z96_A 6 SKIAQLVSMGFDPLEAAQALDAANGD 31 (40)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 46788999999999999999999764
No 172
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=94.84 E-value=0.05 Score=55.01 Aligned_cols=74 Identities=16% Similarity=0.186 Sum_probs=52.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+.+||||.||.|.+++.+.++|. +-|+++|++ ......+......+... ..++.+|+.++... +.+
T Consensus 63 ~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---------~~~ 130 (376)
T 3r0q_C 63 EGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP---------EKV 130 (376)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS---------SCE
T ss_pred CCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC---------Ccc
Confidence 567899999999999999999986 347899999 55555555443322222 23567888776521 579
Q ss_pred cEEEecC
Q 011347 433 DFVICQN 439 (488)
Q Consensus 433 DLVIGGp 439 (488)
|+|+..+
T Consensus 131 D~Iv~~~ 137 (376)
T 3r0q_C 131 DVIISEW 137 (376)
T ss_dssp EEEEECC
T ss_pred eEEEEcC
Confidence 9999744
No 173
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=94.80 E-value=0.034 Score=51.92 Aligned_cols=84 Identities=15% Similarity=0.080 Sum_probs=55.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||+.||.|.+.+.+.+.+-. ..|++||+++.+....+.+....+..+..++.+|+.++-...+ ..+.+|
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~-~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~-----~~~~~d 107 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPE-QDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMI-----PDNSLR 107 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHS-----CTTCEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCC-CeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHc-----CCCChh
Confidence 4568999999999999988776432 2478999999988777665443332333355667654311111 136799
Q ss_pred EEEecCCCCC
Q 011347 434 FVICQNSVPQ 443 (488)
Q Consensus 434 LVIGGpPCQ~ 443 (488)
+|+--+|+.-
T Consensus 108 ~v~~~~~~p~ 117 (218)
T 3dxy_A 108 MVQLFFPDPW 117 (218)
T ss_dssp EEEEESCCCC
T ss_pred eEEEeCCCCc
Confidence 9988766553
No 174
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=94.79 E-value=0.043 Score=52.60 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=51.9
Q ss_pred CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC---CCCcceeccccccChhhHHHhhhccCC
Q 011347 355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ---TGELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~---~g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
+-+||||-||.|.+...|.+.|.+ |+++|+++......+......+. ....++.+|+.++.. .+.
T Consensus 83 ~~~vLDlGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~---------~~~ 150 (299)
T 3g2m_A 83 SGPVLELAAGMGRLTFPFLDLGWE---VTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL---------DKR 150 (299)
T ss_dssp CSCEEEETCTTTTTHHHHHTTTCC---EEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC---------SCC
T ss_pred CCcEEEEeccCCHHHHHHHHcCCe---EEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc---------CCC
Confidence 348999999999999999999864 68899999988887765443210 123356788877642 257
Q ss_pred ccEEEe
Q 011347 432 IDFVIC 437 (488)
Q Consensus 432 ~DLVIG 437 (488)
||+|+.
T Consensus 151 fD~v~~ 156 (299)
T 3g2m_A 151 FGTVVI 156 (299)
T ss_dssp EEEEEE
T ss_pred cCEEEE
Confidence 897774
No 175
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=94.79 E-value=0.055 Score=49.79 Aligned_cols=72 Identities=8% Similarity=0.005 Sum_probs=52.5
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceecccc-ccChhhHHHhhhccCC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQ-ALTTKKFESLIHKLGS 431 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~-~L~~~~Ie~l~~~~g~ 431 (488)
+.+.+|||+-||.|.+...|.+.|.+ |+++|+++......+.. .....++.+|+. .+... ..+.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~-------~~~~ 111 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAAR---WAAYDFSPELLKLARAN-----APHADVYEWNGKGELPAG-------LGAP 111 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSSE---EEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCCTT-------CCCC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHh-----CCCceEEEcchhhccCCc-------CCCC
Confidence 46789999999999999999998863 68999999988777653 223346678884 33210 0257
Q ss_pred ccEEEecC
Q 011347 432 IDFVICQN 439 (488)
Q Consensus 432 ~DLVIGGp 439 (488)
||+|+...
T Consensus 112 fD~v~~~~ 119 (226)
T 3m33_A 112 FGLIVSRR 119 (226)
T ss_dssp EEEEEEES
T ss_pred EEEEEeCC
Confidence 99998763
No 176
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=94.78 E-value=0.054 Score=50.38 Aligned_cols=84 Identities=13% Similarity=0.015 Sum_probs=58.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+.+|||+-||.|..+..|.+++- -..|+++|+++...+..+.++...+.. ...++.+|+.+.-.+ .+ .+.|
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~---~~~f 143 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFEN---VN---DKVY 143 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHH---HT---TSCE
T ss_pred CCCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh---hc---cCCc
Confidence 457899999999999999988432 234789999999998888877654432 233566777654220 11 2579
Q ss_pred cEEEecCCCCCc
Q 011347 433 DFVICQNSVPQI 444 (488)
Q Consensus 433 DLVIGGpPCQ~F 444 (488)
|+|+-..++..+
T Consensus 144 D~V~~~~~~~~~ 155 (232)
T 3ntv_A 144 DMIFIDAAKAQS 155 (232)
T ss_dssp EEEEEETTSSSH
T ss_pred cEEEEcCcHHHH
Confidence 999977766544
No 177
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=94.72 E-value=0.039 Score=53.89 Aligned_cols=77 Identities=17% Similarity=0.129 Sum_probs=54.7
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccCh---hhHHHhhhcc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT---KKFESLIHKL 429 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~---~~Ie~l~~~~ 429 (488)
+.+.+||||-||.|.++..|.+.|.+ |+++|+++...+..+..... . .+..|+.+++. ..+ .
T Consensus 44 ~~g~~VLDlGcGtG~~a~~La~~g~~---V~gvD~S~~ml~~Ar~~~~~-----~-~v~~~~~~~~~~~~~~~------~ 108 (261)
T 3iv6_A 44 VPGSTVAVIGASTRFLIEKALERGAS---VTVFDFSQRMCDDLAEALAD-----R-CVTIDLLDITAEIPKEL------A 108 (261)
T ss_dssp CTTCEEEEECTTCHHHHHHHHHTTCE---EEEEESCHHHHHHHHHHTSS-----S-CCEEEECCTTSCCCGGG------T
T ss_pred CCcCEEEEEeCcchHHHHHHHhcCCE---EEEEECCHHHHHHHHHHHHh-----c-cceeeeeeccccccccc------C
Confidence 45679999999999999999999864 68899999998888764321 1 23455555543 111 2
Q ss_pred CCccEEEecCCCCCc
Q 011347 430 GSIDFVICQNSVPQI 444 (488)
Q Consensus 430 g~~DLVIGGpPCQ~F 444 (488)
+.||+|+.....+.|
T Consensus 109 ~~fD~Vv~~~~l~~~ 123 (261)
T 3iv6_A 109 GHFDFVLNDRLINRF 123 (261)
T ss_dssp TCCSEEEEESCGGGS
T ss_pred CCccEEEEhhhhHhC
Confidence 579999987655444
No 178
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=94.71 E-value=0.079 Score=48.14 Aligned_cols=81 Identities=14% Similarity=0.232 Sum_probs=54.3
Q ss_pred CCCcccccCCCCChhHHHHHHc---CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL 429 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a---Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~ 429 (488)
.+.+|||+-||.|..++.|.+. +. .|+++|+++...+..+.++...+... ..++.+|+.+. +..+....
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~~ 136 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDG---TLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDT----LAELIHAG 136 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHHHHTTT
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHH----HHHhhhcc
Confidence 3468999999999999998875 43 37899999999888888776543322 22455666432 22111111
Q ss_pred --CCccEEEecCCC
Q 011347 430 --GSIDFVICQNSV 441 (488)
Q Consensus 430 --g~~DLVIGGpPC 441 (488)
+.||+|+--++.
T Consensus 137 ~~~~fD~v~~~~~~ 150 (225)
T 3tr6_A 137 QAWQYDLIYIDADK 150 (225)
T ss_dssp CTTCEEEEEECSCG
T ss_pred CCCCccEEEECCCH
Confidence 679999965553
No 179
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=94.71 E-value=0.079 Score=50.78 Aligned_cols=73 Identities=18% Similarity=0.235 Sum_probs=53.5
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG 430 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g 430 (488)
..+.+|||+-||.|++...+.+. |.+ |+++|+++...+..+......+.. ...+..+|+.++ .+
T Consensus 71 ~~~~~vLDiGcG~G~~~~~la~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----------~~ 136 (302)
T 3hem_A 71 EPGMTLLDIGCGWGSTMRHAVAEYDVN---VIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-----------DE 136 (302)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCE---EEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-----------CC
T ss_pred CCcCEEEEeeccCcHHHHHHHHhCCCE---EEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-----------CC
Confidence 35679999999999999988776 843 789999999888877765443322 223566787765 15
Q ss_pred CccEEEecC
Q 011347 431 SIDFVICQN 439 (488)
Q Consensus 431 ~~DLVIGGp 439 (488)
.||+|+...
T Consensus 137 ~fD~v~~~~ 145 (302)
T 3hem_A 137 PVDRIVSLG 145 (302)
T ss_dssp CCSEEEEES
T ss_pred CccEEEEcc
Confidence 799998653
No 180
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=94.69 E-value=0.068 Score=48.14 Aligned_cols=73 Identities=22% Similarity=0.145 Sum_probs=54.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||+-||.|.+...|.+.|.+ ++++|+++...+..+.... ....+..+|+.++... +.||
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~~---------~~fD 108 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGRT---VYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEVP---------TSID 108 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTCE---EEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCCC---------SCCS
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCCe---EEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCCC---------CCeE
Confidence 5678999999999999999998864 6889999998877765332 1233566888776421 5799
Q ss_pred EEEecCCCC
Q 011347 434 FVICQNSVP 442 (488)
Q Consensus 434 LVIGGpPCQ 442 (488)
+|+......
T Consensus 109 ~v~~~~~l~ 117 (220)
T 3hnr_A 109 TIVSTYAFH 117 (220)
T ss_dssp EEEEESCGG
T ss_pred EEEECcchh
Confidence 998765433
No 181
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=94.67 E-value=0.072 Score=48.07 Aligned_cols=84 Identities=19% Similarity=0.131 Sum_probs=55.6
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
..+.+|||+-||.|.+...+.+.+-+-..++++|+++...+..+......+.....+..+|+...-. ..+.+
T Consensus 76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~f 147 (215)
T 2yxe_A 76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE--------PLAPY 147 (215)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG--------GGCCE
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--------CCCCe
Confidence 3567999999999999988877651112478999999988877765543322222344566632211 12579
Q ss_pred cEEEecCCCCCc
Q 011347 433 DFVICQNSVPQI 444 (488)
Q Consensus 433 DLVIGGpPCQ~F 444 (488)
|+|+...++..+
T Consensus 148 D~v~~~~~~~~~ 159 (215)
T 2yxe_A 148 DRIYTTAAGPKI 159 (215)
T ss_dssp EEEEESSBBSSC
T ss_pred eEEEECCchHHH
Confidence 999988776654
No 182
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=94.62 E-value=0.043 Score=51.63 Aligned_cols=79 Identities=15% Similarity=0.121 Sum_probs=54.2
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccC
Q 011347 352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLG 430 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g 430 (488)
.+.+.+|||+-||.|++...+.+.|. ..++++|+++......+......+. ....+..+|+.++.-. ..+
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~ 132 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-------LGK 132 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-------CSS
T ss_pred CCCCCeEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccC-------CCC
Confidence 35678999999999999999988885 2478999999998887765543221 1123456777665310 124
Q ss_pred CccEEEecC
Q 011347 431 SIDFVICQN 439 (488)
Q Consensus 431 ~~DLVIGGp 439 (488)
.||+|+...
T Consensus 133 ~fD~v~~~~ 141 (298)
T 1ri5_A 133 EFDVISSQF 141 (298)
T ss_dssp CEEEEEEES
T ss_pred CcCEEEECc
Confidence 688887654
No 183
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=94.59 E-value=0.038 Score=59.11 Aligned_cols=106 Identities=13% Similarity=0.097 Sum_probs=61.6
Q ss_pred hhhhhcccCcchhh-hccccccCCCCCcccccCCCCChhHHHHHHc----CC-------------eeeeEEEeeCCHHHH
Q 011347 331 SLRHCFQTDTLGYH-LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL----GI-------------KLKGVISIETSETNR 392 (488)
Q Consensus 331 ~Lgnsfqvdti~~~-lsvLK~~fp~~itVLDLFSGiGGlslGL~~a----Gi-------------~~k~vvsVEid~~a~ 392 (488)
..|-.|....+... ...+.+ ..+.+|+|..||.|||.+.+.+. +- ....++++|+++.+.
T Consensus 147 ~~G~fyTP~~iv~~mv~~l~p--~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~ 224 (541)
T 2ar0_A 147 GAGQYFTPRPLIKTIIHLLKP--QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR 224 (541)
T ss_dssp ---CCCCCHHHHHHHHHHHCC--CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHH
T ss_pred cCCeeeCCHHHHHHHHHHhcc--CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHH
Confidence 34555544443333 233322 24689999999999998776432 10 112478999999998
Q ss_pred HHHHHHhhhcCCCC-----CcceeccccccChhhHHHhhhccCCccEEEecCCCCCcc
Q 011347 393 RILKRWWESSGQTG-----ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIP 445 (488)
Q Consensus 393 ~t~~~~~~~~n~~g-----~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ~FS 445 (488)
++.+.+..-++... ..+..+|.-... ....+.||+|++-||.....
T Consensus 225 ~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~-------~~~~~~fD~Vv~NPPf~~~~ 275 (541)
T 2ar0_A 225 RLALMNCLLHDIEGNLDHGGAIRLGNTLGSD-------GENLPKAHIVATNPPFGSAA 275 (541)
T ss_dssp HHHHHHHHTTTCCCBGGGTBSEEESCTTSHH-------HHTSCCEEEEEECCCCTTCS
T ss_pred HHHHHHHHHhCCCccccccCCeEeCCCcccc-------cccccCCeEEEECCCccccc
Confidence 88776543222221 224455542211 01236899999999987655
No 184
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=94.59 E-value=0.032 Score=50.75 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=52.1
Q ss_pred cccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhh
Q 011347 347 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI 426 (488)
Q Consensus 347 vLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~ 426 (488)
.|+.+.+.+.+|||+-||.|.+...|.+.|. .+.++|+++......+... ....+..+|+.++..
T Consensus 33 ~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~------- 97 (239)
T 3bxo_A 33 LVRSRTPEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRL-----PDATLHQGDMRDFRL------- 97 (239)
T ss_dssp HHHHHCTTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTCCC-------
T ss_pred HHHHhcCCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHccc-------
Confidence 3344346678999999999999999988875 3688999999887776532 123355677765532
Q ss_pred hccCCccEEEe
Q 011347 427 HKLGSIDFVIC 437 (488)
Q Consensus 427 ~~~g~~DLVIG 437 (488)
.+.+|+|+.
T Consensus 98 --~~~~D~v~~ 106 (239)
T 3bxo_A 98 --GRKFSAVVS 106 (239)
T ss_dssp --SSCEEEEEE
T ss_pred --CCCCcEEEE
Confidence 146788873
No 185
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=94.57 E-value=0.045 Score=50.33 Aligned_cols=92 Identities=17% Similarity=0.145 Sum_probs=58.7
Q ss_pred hhccccccCCCCCcccccCCCCChhHHHHHH-cCC-----eeeeEEEeeCCHHHHHHHHHHhhhcC-----CCCCcceec
Q 011347 344 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGI-----KLKGVISIETSETNRRILKRWWESSG-----QTGELVQIE 412 (488)
Q Consensus 344 ~lsvLK~~fp~~itVLDLFSGiGGlslGL~~-aGi-----~~k~vvsVEid~~a~~t~~~~~~~~n-----~~g~lv~~~ 412 (488)
.+..|......+.+|||+-||.|.++..|.+ .|. . ..|+++|+++...+..+.+..... .....+..+
T Consensus 74 ~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 152 (227)
T 1r18_A 74 ALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDAD-TRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG 152 (227)
T ss_dssp HHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTT-CEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred HHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCcc-CEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEEC
Confidence 3444443345578999999999999988766 441 0 137899999998877766543211 112234556
Q ss_pred cccccChhhHHHhhhccCCccEEEecCCCCCc
Q 011347 413 DIQALTTKKFESLIHKLGSIDFVICQNSVPQI 444 (488)
Q Consensus 413 DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ~F 444 (488)
|+.+--. ..+.||+|+...++..+
T Consensus 153 d~~~~~~--------~~~~fD~I~~~~~~~~~ 176 (227)
T 1r18_A 153 DGRKGYP--------PNAPYNAIHVGAAAPDT 176 (227)
T ss_dssp CGGGCCG--------GGCSEEEEEECSCBSSC
T ss_pred CcccCCC--------cCCCccEEEECCchHHH
Confidence 7654111 12579999988887655
No 186
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=94.56 E-value=0.052 Score=54.24 Aligned_cols=76 Identities=17% Similarity=0.157 Sum_probs=52.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+.+|||+-||.|.++..+.++|. .-|+++|+++ .....+......+..+ ..++.+|+.++.-. .+.+
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~g~--~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--------~~~f 134 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKAGA--RKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELP--------VEKV 134 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHTTC--SEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS--------SSCE
T ss_pred CCCEEEEEeccchHHHHHHHHCCC--CEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCC--------CCce
Confidence 457899999999999999999986 3478999996 4444444333222222 23567888776311 2579
Q ss_pred cEEEecCC
Q 011347 433 DFVICQNS 440 (488)
Q Consensus 433 DLVIGGpP 440 (488)
|+|+.-++
T Consensus 135 D~Iis~~~ 142 (349)
T 3q7e_A 135 DIIISEWM 142 (349)
T ss_dssp EEEEECCC
T ss_pred EEEEEccc
Confidence 99997543
No 187
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=94.54 E-value=0.074 Score=50.09 Aligned_cols=78 Identities=22% Similarity=0.227 Sum_probs=53.1
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhc-C--CCCCcceeccccccChhhHHHhhhcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS-G--QTGELVQIEDIQALTTKKFESLIHKL 429 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~-n--~~g~lv~~~DI~~L~~~~Ie~l~~~~ 429 (488)
.+.+|||+.||.|.++..+.++ |-. ..++++|+++.+.+..+.+.... + .....+..+|+.+... ..
T Consensus 99 ~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~--------~~ 169 (280)
T 1i9g_A 99 PGARVLEAGAGSGALTLSLLRAVGPA-GQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL--------PD 169 (280)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC--------CT
T ss_pred CCCEEEEEcccccHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC--------CC
Confidence 4678999999999999988874 311 23789999999888877765432 1 1122345677766521 12
Q ss_pred CCccEEEecCC
Q 011347 430 GSIDFVICQNS 440 (488)
Q Consensus 430 g~~DLVIGGpP 440 (488)
+.+|+|+...|
T Consensus 170 ~~~D~v~~~~~ 180 (280)
T 1i9g_A 170 GSVDRAVLDML 180 (280)
T ss_dssp TCEEEEEEESS
T ss_pred CceeEEEECCc
Confidence 47999998665
No 188
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=94.53 E-value=0.084 Score=48.79 Aligned_cols=77 Identities=13% Similarity=0.103 Sum_probs=50.0
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
..+.+|||+-||.|.+...|.+. | . ..|+++|+++.+.+..+..... .....++.+|+.+... . ....+.
T Consensus 73 ~~~~~VLDlGcG~G~~~~~la~~~~-~-~~v~gvD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~--~---~~~~~~ 143 (230)
T 1fbn_A 73 KRDSKILYLGASAGTTPSHVADIAD-K-GIVYAIEYAPRIMRELLDACAE--RENIIPILGDANKPQE--Y---ANIVEK 143 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTT-T-SEEEEEESCHHHHHHHHHHTTT--CTTEEEEECCTTCGGG--G---TTTSCC
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcC-C-cEEEEEECCHHHHHHHHHHhhc--CCCeEEEECCCCCccc--c---cccCcc
Confidence 35678999999999999888765 5 2 2478999999988777654322 1233345677765211 0 000157
Q ss_pred ccEEEec
Q 011347 432 IDFVICQ 438 (488)
Q Consensus 432 ~DLVIGG 438 (488)
||+|+..
T Consensus 144 ~D~v~~~ 150 (230)
T 1fbn_A 144 VDVIYED 150 (230)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 9999843
No 189
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=94.51 E-value=0.084 Score=50.92 Aligned_cols=52 Identities=17% Similarity=0.080 Sum_probs=42.7
Q ss_pred ccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhc
Q 011347 350 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS 402 (488)
Q Consensus 350 ~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~ 402 (488)
++.+.+-+|+|+=||.|-+.+.+-+.|.. ..|+++|+++.+....+.+-...
T Consensus 17 ~~v~~g~~VlDIGtGsG~l~i~la~~~~~-~~V~AvDi~~~al~~A~~N~~~~ 68 (230)
T 3lec_A 17 NYVPKGARLLDVGSDHAYLPIFLLQMGYC-DFAIAGEVVNGPYQSALKNVSEH 68 (230)
T ss_dssp TTSCTTEEEEEETCSTTHHHHHHHHTTCE-EEEEEEESSHHHHHHHHHHHHHT
T ss_pred HhCCCCCEEEEECCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHc
Confidence 44556789999999999999999998843 45889999999998888766543
No 190
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=94.50 E-value=0.11 Score=47.40 Aligned_cols=80 Identities=15% Similarity=0.149 Sum_probs=51.4
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
..+.+|||+.||.|.++..|.+. |-. ..|+++|+++.+.+..+..... ..+..++.+|+.+... +. ...+.
T Consensus 72 ~~~~~vLDlG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~~~~~~~~--~~~v~~~~~d~~~~~~--~~---~~~~~ 143 (227)
T 1g8a_A 72 KPGKSVLYLGIASGTTASHVSDIVGWE-GKIFGIEFSPRVLRELVPIVEE--RRNIVPILGDATKPEE--YR---ALVPK 143 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHSS--CTTEEEEECCTTCGGG--GT---TTCCC
T ss_pred CCCCEEEEEeccCCHHHHHHHHHhCCC-eEEEEEECCHHHHHHHHHHHhc--cCCCEEEEccCCCcch--hh---cccCC
Confidence 35678999999999999988754 421 2478999999876665543321 1233356678765321 10 01247
Q ss_pred ccEEEecCC
Q 011347 432 IDFVICQNS 440 (488)
Q Consensus 432 ~DLVIGGpP 440 (488)
+|+|+...|
T Consensus 144 ~D~v~~~~~ 152 (227)
T 1g8a_A 144 VDVIFEDVA 152 (227)
T ss_dssp EEEEEECCC
T ss_pred ceEEEECCC
Confidence 999997666
No 191
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.48 E-value=0.032 Score=43.91 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=33.2
Q ss_pred hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347 2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 41 (488)
Q Consensus 2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~ 41 (488)
+++.+|++|||++++|..|+..+|.. .++.-++.|+...
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~~~-nve~A~ewLl~~~ 49 (64)
T 1whc_A 11 TALESLIEMGFPRGRAEKALALTGNQ-GIEAAMDWLMEHE 49 (64)
T ss_dssp CHHHHHHTTTCCHHHHHHHHHHHTSC-CHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcCC-CHHHHHHHHHhCC
Confidence 46789999999999999999999732 5888889999865
No 192
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=94.44 E-value=0.068 Score=52.05 Aligned_cols=53 Identities=11% Similarity=-0.099 Sum_probs=42.8
Q ss_pred cccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhc
Q 011347 349 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS 402 (488)
Q Consensus 349 K~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~ 402 (488)
.++.+.+-+|+|+=||.|-+.+.+-+.|-. .-|+++|+++.+....+.+-...
T Consensus 16 ~~~v~~g~~VlDIGtGsG~l~i~la~~~~~-~~V~avDi~~~al~~A~~N~~~~ 68 (244)
T 3gnl_A 16 ASYITKNERIADIGSDHAYLPCFAVKNQTA-SFAIAGEVVDGPFQSAQKQVRSS 68 (244)
T ss_dssp HTTCCSSEEEEEETCSTTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHT
T ss_pred HHhCCCCCEEEEECCccHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHc
Confidence 344556789999999999999999998843 45889999999998888765443
No 193
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=94.38 E-value=0.065 Score=49.36 Aligned_cols=75 Identities=13% Similarity=0.213 Sum_probs=52.1
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
..+.+|||+-||.|.+...+.+. |. .|+++|+++......+...... ....++.+|+.++... .+.
T Consensus 54 ~~~~~vLdiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~--------~~~ 120 (266)
T 3ujc_A 54 NENSKVLDIGSGLGGGCMYINEKYGA---HTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEFP--------ENN 120 (266)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCCC--------TTC
T ss_pred CCCCEEEEECCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCCC--------CCc
Confidence 35679999999999999998876 65 3688999999887776532211 2233566787765311 257
Q ss_pred ccEEEecCC
Q 011347 432 IDFVICQNS 440 (488)
Q Consensus 432 ~DLVIGGpP 440 (488)
||+|+....
T Consensus 121 fD~v~~~~~ 129 (266)
T 3ujc_A 121 FDLIYSRDA 129 (266)
T ss_dssp EEEEEEESC
T ss_pred EEEEeHHHH
Confidence 899886543
No 194
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=94.37 E-value=0.1 Score=48.32 Aligned_cols=81 Identities=23% Similarity=0.271 Sum_probs=53.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||+.||.|.+...+.+.+- ..|+++|+++...+..+.+....+.....+..+|+. .. +. ..+++|
T Consensus 91 ~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~---~~----~~~~fD 160 (235)
T 1jg1_A 91 PGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGS-KG---FP----PKAPYD 160 (235)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG-GC---CG----GGCCEE
T ss_pred CCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcc-cC---CC----CCCCcc
Confidence 467899999999999988877652 247899999998887776654332222234456651 11 11 124699
Q ss_pred EEEecCCCCCc
Q 011347 434 FVICQNSVPQI 444 (488)
Q Consensus 434 LVIGGpPCQ~F 444 (488)
+|+...++..+
T Consensus 161 ~Ii~~~~~~~~ 171 (235)
T 1jg1_A 161 VIIVTAGAPKI 171 (235)
T ss_dssp EEEECSBBSSC
T ss_pred EEEECCcHHHH
Confidence 99987776654
No 195
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=94.36 E-value=0.049 Score=53.34 Aligned_cols=81 Identities=14% Similarity=0.194 Sum_probs=53.4
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhc----CCCCCcceeccccccChhhHHHhhh
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIH 427 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~----n~~g~lv~~~DI~~L~~~~Ie~l~~ 427 (488)
+++.+||||.||.|++...+.+. +. .-|++||+|+...+..+.+.... +.....++.+|..+.-. .
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~-------~ 159 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSV--EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR-------K 159 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTC--SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG-------G
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh-------h
Confidence 35579999999999999988776 42 35789999999998888765321 11222345566643211 1
Q ss_pred ccCCccEEEecCCCC
Q 011347 428 KLGSIDFVICQNSVP 442 (488)
Q Consensus 428 ~~g~~DLVIGGpPCQ 442 (488)
..+.+|+|+..+|+.
T Consensus 160 ~~~~fD~Ii~d~~~~ 174 (296)
T 1inl_A 160 FKNEFDVIIIDSTDP 174 (296)
T ss_dssp CSSCEEEEEEEC---
T ss_pred CCCCceEEEEcCCCc
Confidence 125799999888764
No 196
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=94.33 E-value=0.098 Score=47.60 Aligned_cols=74 Identities=22% Similarity=0.205 Sum_probs=51.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||+-||.|.+...+.+.|.. .++++|+++......+..... .+..+..+|+.++.. ..+.+|
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~--------~~~~fD 109 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHL--------PQDSFD 109 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCC--------CTTCEE
T ss_pred CCCEEEEEcCcCCHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccC--------CCCCce
Confidence 4678999999999999999998862 478899999988777653221 122345567765531 124688
Q ss_pred EEEecCC
Q 011347 434 FVICQNS 440 (488)
Q Consensus 434 LVIGGpP 440 (488)
+|+....
T Consensus 110 ~v~~~~~ 116 (243)
T 3bkw_A 110 LAYSSLA 116 (243)
T ss_dssp EEEEESC
T ss_pred EEEEecc
Confidence 8886543
No 197
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=94.26 E-value=0.064 Score=52.86 Aligned_cols=81 Identities=11% Similarity=0.131 Sum_probs=54.7
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcC-----CCCCcceeccccccChhhHHHhhh
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALTTKKFESLIH 427 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n-----~~g~lv~~~DI~~L~~~~Ie~l~~ 427 (488)
+++-+||||-||.|++...+.+.. ...-|.+||+|+...+..+.+....+ .+...++.+|..+.-..
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~------- 153 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ------- 153 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCT-TCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---C-------
T ss_pred CCCCEEEEEeCChhHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhh-------
Confidence 456799999999999998887762 23457899999999998888764321 22333566787654211
Q ss_pred ccCCccEEEecCCC
Q 011347 428 KLGSIDFVICQNSV 441 (488)
Q Consensus 428 ~~g~~DLVIGGpPC 441 (488)
..+.+|+|+.-+|.
T Consensus 154 ~~~~fDvIi~D~~~ 167 (294)
T 3adn_A 154 TSQTFDVIISDCTD 167 (294)
T ss_dssp CCCCEEEEEECC--
T ss_pred cCCCccEEEECCCC
Confidence 12579999986553
No 198
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=94.25 E-value=0.052 Score=59.87 Aligned_cols=82 Identities=13% Similarity=0.145 Sum_probs=54.8
Q ss_pred CCCcccccCCCCChhHHHHHHcC------Ce-----------------------------------eeeEEEeeCCHHHH
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLG------IK-----------------------------------LKGVISIETSETNR 392 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aG------i~-----------------------------------~k~vvsVEid~~a~ 392 (488)
.+.++||.|||.|++.+..-..+ +. -..++++|+|+.+.
T Consensus 190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av 269 (703)
T 3v97_A 190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI 269 (703)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHH
T ss_pred CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHH
Confidence 45789999999999976544321 10 02478999999999
Q ss_pred HHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCccEEEecCCC
Q 011347 393 RILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV 441 (488)
Q Consensus 393 ~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPC 441 (488)
++-+.+....+... ..+..+|+.++.... ..+.+|+|+.-||=
T Consensus 270 ~~A~~N~~~agv~~~i~~~~~D~~~~~~~~------~~~~~d~Iv~NPPY 313 (703)
T 3v97_A 270 QRARTNARLAGIGELITFEVKDVAQLTNPL------PKGPYGTVLSNPPY 313 (703)
T ss_dssp HHHHHHHHHTTCGGGEEEEECCGGGCCCSC------TTCCCCEEEECCCC
T ss_pred HHHHHHHHHcCCCCceEEEECChhhCcccc------ccCCCCEEEeCCCc
Confidence 99888766543222 224567777654210 11379999999984
No 199
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=94.24 E-value=0.068 Score=49.16 Aligned_cols=83 Identities=17% Similarity=0.168 Sum_probs=56.5
Q ss_pred CCCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccC
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLG 430 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g 430 (488)
.+.+|||+-||.|++...+.+. |. .|+++|+++...+..+.++...+... ..+..+|+.+.- .... ..+
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~-~~~ 125 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEA---TIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLG----EKLE-LYP 125 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTC---EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSH----HHHT-TSC
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHH----Hhcc-cCC
Confidence 4568999999999999888876 43 47899999999888887765443211 224456665431 1110 125
Q ss_pred CccEEEecCCCCCc
Q 011347 431 SIDFVICQNSVPQI 444 (488)
Q Consensus 431 ~~DLVIGGpPCQ~F 444 (488)
.||+|+...||...
T Consensus 126 ~fD~I~~~~~~~~~ 139 (233)
T 2gpy_A 126 LFDVLFIDAAKGQY 139 (233)
T ss_dssp CEEEEEEEGGGSCH
T ss_pred CccEEEECCCHHHH
Confidence 79999998888543
No 200
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=94.24 E-value=0.042 Score=59.03 Aligned_cols=83 Identities=12% Similarity=0.103 Sum_probs=52.9
Q ss_pred CCCcccccCCCCChhHHHHHHc-C-CeeeeEEEeeCCHHHHHHHHHHhhhcCCC--CCcceeccccccC-hhhHHHhhhc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL-G-IKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALT-TKKFESLIHK 428 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a-G-i~~k~vvsVEid~~a~~t~~~~~~~~n~~--g~lv~~~DI~~L~-~~~Ie~l~~~ 428 (488)
.+.+|+|.+||.|||-+.+.+. . ..-..++++|+++.+.++.+.+..-++.. ...+..+|.-..+ +. ..
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~------~~ 294 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPT------QE 294 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCC------SS
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccc------cc
Confidence 5679999999999998776543 1 00135789999999988877654322221 1124455543321 00 11
Q ss_pred cCCccEEEecCCCC
Q 011347 429 LGSIDFVICQNSVP 442 (488)
Q Consensus 429 ~g~~DLVIGGpPCQ 442 (488)
.+.||+|+|=||=.
T Consensus 295 ~~~fD~IvaNPPf~ 308 (542)
T 3lkd_A 295 PTNFDGVLMNPPYS 308 (542)
T ss_dssp CCCBSEEEECCCTT
T ss_pred cccccEEEecCCcC
Confidence 25799999999865
No 201
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=94.24 E-value=0.054 Score=50.04 Aligned_cols=75 Identities=16% Similarity=0.128 Sum_probs=51.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||+-||.|.+...|.+.+. ..++++|+++...+..+.+.... .....++.+|+.++.. .+ .-+.||
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~-~~-----~~~~fD 130 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQ-THKVIPLKGLWEDVAP-TL-----PDGHFD 130 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGC-SSEEEEEESCHHHHGG-GS-----CTTCEE
T ss_pred CCCeEEEEeccCCHHHHHHHhcCC--CeEEEEcCCHHHHHHHHHHHHhc-CCCeEEEecCHHHhhc-cc-----CCCceE
Confidence 567999999999999999977764 35789999999988887754322 1222344566654311 01 125799
Q ss_pred EEEe
Q 011347 434 FVIC 437 (488)
Q Consensus 434 LVIG 437 (488)
+|+.
T Consensus 131 ~V~~ 134 (236)
T 1zx0_A 131 GILY 134 (236)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9997
No 202
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=94.22 E-value=0.091 Score=52.07 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=54.3
Q ss_pred CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347 355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 434 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL 434 (488)
+-+||||-||.|.+...+.+.|-.. .++++|+++.+.+..+.+....+.. ..+..+|+.+.. .+.||+
T Consensus 197 ~~~VLDlGcG~G~~~~~la~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~d~~~~~----------~~~fD~ 264 (343)
T 2pjd_A 197 KGKVLDVGCGAGVLSVAFARHSPKI-RLTLCDVSAPAVEASRATLAANGVE-GEVFASNVFSEV----------KGRFDM 264 (343)
T ss_dssp CSBCCBTTCTTSHHHHHHHHHCTTC-BCEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTC----------CSCEEE
T ss_pred CCeEEEecCccCHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHhCCC-CEEEEccccccc----------cCCeeE
Confidence 4589999999999999998887432 3678999999888877765443222 223456664321 257999
Q ss_pred EEecCCCC
Q 011347 435 VICQNSVP 442 (488)
Q Consensus 435 VIGGpPCQ 442 (488)
|+..+|..
T Consensus 265 Iv~~~~~~ 272 (343)
T 2pjd_A 265 IISNPPFH 272 (343)
T ss_dssp EEECCCCC
T ss_pred EEECCCcc
Confidence 99988864
No 203
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.21 E-value=0.048 Score=42.92 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=32.8
Q ss_pred hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347 2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 41 (488)
Q Consensus 2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~ 41 (488)
+++.+|++|||++++|..|+..+|.. .++.-++.|+..+
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t~~~-nve~A~ewL~~~~ 59 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALASTGGR-SVQTACDWLFSHS 59 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTTS-CHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCC-CHHHHHHHHHhCC
Confidence 35688999999999999999999962 4777788888755
No 204
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=94.14 E-value=0.069 Score=50.07 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=52.8
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347 352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
.+.+.+|||+-||.|.+...|.+.|.+ ++++|+++...+..+.... .. +...|+.++.. ..+.
T Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~l~~a~~~~~-----~~-~~~~d~~~~~~--------~~~~ 114 (260)
T 2avn_A 52 LKNPCRVLDLGGGTGKWSLFLQERGFE---VVLVDPSKEMLEVAREKGV-----KN-VVEAKAEDLPF--------PSGA 114 (260)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTTTCE---EEEEESCHHHHHHHHHHTC-----SC-EEECCTTSCCS--------CTTC
T ss_pred cCCCCeEEEeCCCcCHHHHHHHHcCCe---EEEEeCCHHHHHHHHhhcC-----CC-EEECcHHHCCC--------CCCC
Confidence 346679999999999999999988864 6789999998877765321 12 56678876541 1257
Q ss_pred ccEEEecCC
Q 011347 432 IDFVICQNS 440 (488)
Q Consensus 432 ~DLVIGGpP 440 (488)
||+|+....
T Consensus 115 fD~v~~~~~ 123 (260)
T 2avn_A 115 FEAVLALGD 123 (260)
T ss_dssp EEEEEECSS
T ss_pred EEEEEEcch
Confidence 999986443
No 205
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=94.08 E-value=0.063 Score=49.22 Aligned_cols=84 Identities=18% Similarity=0.200 Sum_probs=55.6
Q ss_pred CCCcccccCCCCChhHHHHHHc---CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhc-
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK- 428 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a---Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~- 428 (488)
.+.+||||.||.|+.++.+-++ |. .|+++|+++...+..+.++...+... ..++.+|..++- +.+...
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l----~~~~~~~ 130 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGA---RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLI----PQLKKKY 130 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHG----GGTTTTS
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHH----HHHHHhc
Confidence 3568999999999999988774 43 37899999999988888765443221 224556664421 111111
Q ss_pred -cCCccEEEecCCCCCc
Q 011347 429 -LGSIDFVICQNSVPQI 444 (488)
Q Consensus 429 -~g~~DLVIGGpPCQ~F 444 (488)
.+.||+|+-..++..+
T Consensus 131 ~~~~fD~V~~d~~~~~~ 147 (221)
T 3u81_A 131 DVDTLDMVFLDHWKDRY 147 (221)
T ss_dssp CCCCCSEEEECSCGGGH
T ss_pred CCCceEEEEEcCCcccc
Confidence 1579999877665544
No 206
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=94.07 E-value=0.14 Score=46.66 Aligned_cols=85 Identities=11% Similarity=0.108 Sum_probs=54.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhcc--C
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKL--G 430 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~--g 430 (488)
.+.+|||+.||.|..++.+.++--.-..++++|+++...+..+.++...+.. ...++.+|+.+. +..+.... +
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----~~~~~~~~~~~ 144 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALET----LDELLAAGEAG 144 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHHHHHTTCTT
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHH----HHHHHhcCCCC
Confidence 4568999999999999988875100124789999999988888877554321 222445666432 22221111 5
Q ss_pred CccEEEecCCCC
Q 011347 431 SIDFVICQNSVP 442 (488)
Q Consensus 431 ~~DLVIGGpPCQ 442 (488)
.||+|+.-+|..
T Consensus 145 ~~D~v~~d~~~~ 156 (229)
T 2avd_A 145 TFDVAVVDADKE 156 (229)
T ss_dssp CEEEEEECSCST
T ss_pred CccEEEECCCHH
Confidence 799999877644
No 207
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=94.05 E-value=0.088 Score=47.21 Aligned_cols=75 Identities=24% Similarity=0.158 Sum_probs=51.1
Q ss_pred ccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhh
Q 011347 348 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH 427 (488)
Q Consensus 348 LK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~ 427 (488)
|+.+.+.+.+|||+-||.|.+...+ |. ..++++|+++...+..+... ....+..+|+.++..
T Consensus 30 l~~~~~~~~~vLdiG~G~G~~~~~l---~~--~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~-------- 91 (211)
T 2gs9_A 30 LKGLLPPGESLLEVGAGTGYWLRRL---PY--PQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPF-------- 91 (211)
T ss_dssp HHTTCCCCSEEEEETCTTCHHHHHC---CC--SEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCS--------
T ss_pred HHHhcCCCCeEEEECCCCCHhHHhC---CC--CeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCC--------
Confidence 3344446789999999999988776 65 23689999999887776532 223355677776541
Q ss_pred ccCCccEEEecCC
Q 011347 428 KLGSIDFVICQNS 440 (488)
Q Consensus 428 ~~g~~DLVIGGpP 440 (488)
..+.+|+|+....
T Consensus 92 ~~~~fD~v~~~~~ 104 (211)
T 2gs9_A 92 PGESFDVVLLFTT 104 (211)
T ss_dssp CSSCEEEEEEESC
T ss_pred CCCcEEEEEEcCh
Confidence 1247999986543
No 208
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.05 E-value=0.046 Score=43.12 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=33.8
Q ss_pred hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347 2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 41 (488)
Q Consensus 2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~ 41 (488)
+.+.+|++|||+++.+..|+-.+|. ..++.-++.|++.+
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~n-~~~e~A~~wL~~h~ 49 (64)
T 2crn_A 11 SLLEPLLAMGFPVHTALKALAATGR-KTAEEALAWLHDHC 49 (64)
T ss_dssp SSHHHHHHTSCCHHHHHHHHHHHTS-CCHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC-CCHHHHHHHHHhCC
Confidence 3567899999999999999999987 46888889999876
No 209
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=94.00 E-value=0.027 Score=41.80 Aligned_cols=37 Identities=24% Similarity=0.188 Sum_probs=30.1
Q ss_pred hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhc
Q 011347 2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSG 40 (488)
Q Consensus 2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~ 40 (488)
+++.+|+.|||+++.|..|+..||.+ ++.-++.+|..
T Consensus 6 eaI~rL~~mGF~~~~a~~Al~a~~~n--~e~A~~~Lf~~ 42 (47)
T 1dv0_A 6 EAIERLKALGFPESLVIQAYFACEKN--ENLAANFLLSQ 42 (47)
T ss_dssp HHHTTTTTTTCCHHHHHHHHTTTTSC--HHHHHHHTTSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhC
Confidence 46789999999999999999999954 55557777653
No 210
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=93.95 E-value=0.074 Score=51.53 Aligned_cols=80 Identities=16% Similarity=0.170 Sum_probs=55.2
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhc----CCCCCcceeccccccChhhHHHhhh
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIH 427 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~----n~~g~lv~~~DI~~L~~~~Ie~l~~ 427 (488)
+++.+||||.||.|++...+.+. |. .-|.+||+|+...+..+.++... +.+...++.+|..+. ++.
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~----l~~--- 144 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSV--KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH----IAK--- 144 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTC--SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH----HHT---
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCC--ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH----Hhh---
Confidence 45689999999999999888776 53 45789999999999988876421 112233556666431 111
Q ss_pred ccCCccEEEecCCC
Q 011347 428 KLGSIDFVICQNSV 441 (488)
Q Consensus 428 ~~g~~DLVIGGpPC 441 (488)
..+.+|+|+-.+|.
T Consensus 145 ~~~~fD~Ii~d~~~ 158 (275)
T 1iy9_A 145 SENQYDVIMVDSTE 158 (275)
T ss_dssp CCSCEEEEEESCSS
T ss_pred CCCCeeEEEECCCC
Confidence 12579999987765
No 211
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=93.92 E-value=0.14 Score=47.24 Aligned_cols=73 Identities=25% Similarity=0.201 Sum_probs=50.2
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG 430 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g 430 (488)
+.+.+|||+=||.|.+...|.+. |.+ ++++|+++...+..+......+.. ...+..+|+.++.. .+
T Consensus 35 ~~~~~VLDiGcG~G~~~~~la~~~~~~---v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~ 102 (256)
T 1nkv_A 35 KPGTRILDLGSGSGEMLCTWARDHGIT---GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA---------NE 102 (256)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHTCCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC---------SS
T ss_pred CCCCEEEEECCCCCHHHHHHHHhcCCe---EEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc---------CC
Confidence 35679999999999999888765 653 589999999887777654432221 22345677766542 14
Q ss_pred CccEEEe
Q 011347 431 SIDFVIC 437 (488)
Q Consensus 431 ~~DLVIG 437 (488)
.||+|+.
T Consensus 103 ~fD~V~~ 109 (256)
T 1nkv_A 103 KCDVAAC 109 (256)
T ss_dssp CEEEEEE
T ss_pred CCCEEEE
Confidence 6787775
No 212
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=93.92 E-value=0.079 Score=54.59 Aligned_cols=83 Identities=20% Similarity=0.176 Sum_probs=56.2
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC-----C---CCcceeccccccChhhHHH
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-----T---GELVQIEDIQALTTKKFES 424 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~-----~---g~lv~~~DI~~L~~~~Ie~ 424 (488)
|++-+||+|++|.||+..-+.+.+. .-|..||||+...+..+.|+...+. + ...++.+|..+. ++.
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~--~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~----L~~ 260 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKP--KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPV----LKR 260 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC--SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHH----HHH
T ss_pred CCCCEEEEEECChhHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHH----HHh
Confidence 5678999999999999987777774 4578999999999999988653221 0 122445555432 221
Q ss_pred hhhccCCccEEEecCCC
Q 011347 425 LIHKLGSIDFVICQNSV 441 (488)
Q Consensus 425 l~~~~g~~DLVIGGpPC 441 (488)
+....+.+|+||--+|=
T Consensus 261 ~~~~~~~fDvII~D~~d 277 (364)
T 2qfm_A 261 YAKEGREFDYVINDLTA 277 (364)
T ss_dssp HHHHTCCEEEEEEECCS
T ss_pred hhccCCCceEEEECCCC
Confidence 11123679999988764
No 213
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=93.92 E-value=0.06 Score=52.86 Aligned_cols=102 Identities=10% Similarity=0.032 Sum_probs=63.7
Q ss_pred HhhhhhcccC--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCe-eeeEEEeeCCHHHHHHHHHHhhhcCCCC
Q 011347 330 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIK-LKGVISIETSETNRRILKRWWESSGQTG 406 (488)
Q Consensus 330 k~Lgnsfqvd--ti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~-~k~vvsVEid~~a~~t~~~~~~~~n~~g 406 (488)
|.+|-.|-+| .+..++..+. ...+.+|||+=||.|.++..|.+.+-+ -..|+++|+|+.....++... . ..
T Consensus 18 k~~GQ~fL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~---~~ 91 (279)
T 3uzu_A 18 KRFGQNFLVDHGVIDAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-G---EL 91 (279)
T ss_dssp CCCSCCEECCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-G---GG
T ss_pred ccCCccccCCHHHHHHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-C---CC
Confidence 3445555443 2333333332 124678999999999999999887642 011689999999998887652 1 12
Q ss_pred CcceeccccccChhhHHHhhhcc-CCccEEEecCC
Q 011347 407 ELVQIEDIQALTTKKFESLIHKL-GSIDFVICQNS 440 (488)
Q Consensus 407 ~lv~~~DI~~L~~~~Ie~l~~~~-g~~DLVIGGpP 440 (488)
..++.+|+.+++-.++ .... ...+.|+|-.|
T Consensus 92 v~~i~~D~~~~~~~~~---~~~~~~~~~~vv~NlP 123 (279)
T 3uzu_A 92 LELHAGDALTFDFGSI---ARPGDEPSLRIIGNLP 123 (279)
T ss_dssp EEEEESCGGGCCGGGG---SCSSSSCCEEEEEECC
T ss_pred cEEEECChhcCChhHh---cccccCCceEEEEccC
Confidence 3367799998875433 1100 13456777776
No 214
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=93.92 E-value=0.11 Score=51.83 Aligned_cols=75 Identities=15% Similarity=0.159 Sum_probs=51.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+.+|||+-||.|.++..+.++|. .-|+++|+++.+ ...+......+. ....++.+|+.++.. .+.+
T Consensus 50 ~~~~VLDiGcGtG~ls~~la~~g~--~~V~~vD~s~~~-~~a~~~~~~~~l~~~v~~~~~d~~~~~~---------~~~~ 117 (348)
T 2y1w_A 50 KDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEASTMA-QHAEVLVKSNNLTDRIVVIPGKVEEVSL---------PEQV 117 (348)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECSTHH-HHHHHHHHHTTCTTTEEEEESCTTTCCC---------SSCE
T ss_pred CcCEEEEcCCCccHHHHHHHhCCC--CEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcchhhCCC---------CCce
Confidence 457899999999999999988885 347899999744 444443322221 123356678776531 1479
Q ss_pred cEEEecCC
Q 011347 433 DFVICQNS 440 (488)
Q Consensus 433 DLVIGGpP 440 (488)
|+|+...+
T Consensus 118 D~Ivs~~~ 125 (348)
T 2y1w_A 118 DIIISEPM 125 (348)
T ss_dssp EEEEECCC
T ss_pred eEEEEeCc
Confidence 99998765
No 215
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=93.90 E-value=0.057 Score=40.87 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=31.7
Q ss_pred hhhhhHHhcCC-CHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347 2 EITLQLLEMGF-SENQVSLAIEKFGSKTPISELADKIFSGQ 41 (488)
Q Consensus 2 ~k~~~l~~mgf-~~~e~~~ai~~~g~~~~~~~l~d~i~a~~ 41 (488)
+++..|++||| +++.+..|+..+|-+ ++.-++.++..+
T Consensus 13 ~~l~~L~~MGF~~~~~~~~AL~~t~gn--ve~Ave~L~~~~ 51 (53)
T 2knz_A 13 QQLEQLNSMGFINREANLQALIATGGD--INAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHTSC--HHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHHcC
Confidence 46789999999 889999999999974 667788887654
No 216
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=93.89 E-value=0.06 Score=49.51 Aligned_cols=74 Identities=16% Similarity=0.066 Sum_probs=51.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||+-||.|.+...|.+.|. ..+.++|+++......+...... ....+..+|+.++.. ..+.||
T Consensus 93 ~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~--------~~~~fD 160 (254)
T 1xtp_A 93 GTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATL--------PPNTYD 160 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCC--------CSSCEE
T ss_pred CCCEEEEECCCcCHHHHHHHHhhc--CEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHCCC--------CCCCeE
Confidence 568999999999999999888773 34789999999888877644221 122345677765531 124689
Q ss_pred EEEecC
Q 011347 434 FVICQN 439 (488)
Q Consensus 434 LVIGGp 439 (488)
+|+...
T Consensus 161 ~v~~~~ 166 (254)
T 1xtp_A 161 LIVIQW 166 (254)
T ss_dssp EEEEES
T ss_pred EEEEcc
Confidence 888644
No 217
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=93.89 E-value=0.14 Score=45.36 Aligned_cols=75 Identities=15% Similarity=0.208 Sum_probs=53.4
Q ss_pred cccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccCCccE
Q 011347 357 TMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSIDF 434 (488)
Q Consensus 357 tVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL 434 (488)
+|||+-||.|.+...|.+. |. .++++|+++......+......+.. ...+...|+.++.- ..+.+|+
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~D~ 114 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSDF---SIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPI--------EDNYADL 114 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSEE---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSS--------CTTCEEE
T ss_pred EEEEECCCCCHHHHHHHHcCCC---eEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCC--------CcccccE
Confidence 8999999999999999886 42 4789999999888887765443322 23356678876541 1257999
Q ss_pred EEecCCCC
Q 011347 435 VICQNSVP 442 (488)
Q Consensus 435 VIGGpPCQ 442 (488)
|+......
T Consensus 115 v~~~~~l~ 122 (219)
T 3dlc_A 115 IVSRGSVF 122 (219)
T ss_dssp EEEESCGG
T ss_pred EEECchHh
Confidence 99765433
No 218
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.84 E-value=0.048 Score=44.12 Aligned_cols=39 Identities=23% Similarity=0.333 Sum_probs=33.5
Q ss_pred hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347 2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 41 (488)
Q Consensus 2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~ 41 (488)
+++.+|++|||+++++..|+..+|.. .++.-++.|+..+
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~n~-~ve~A~ewL~~~~ 49 (74)
T 2dag_A 11 SVIIQLVEMGFPMDACRKAVYYTGNS-GAEAAMNWVMSHM 49 (74)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHTSC-CHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCC-CHHHHHHHHHhCC
Confidence 45688999999999999999999962 5778889999876
No 219
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=93.81 E-value=0.059 Score=45.71 Aligned_cols=80 Identities=15% Similarity=0.102 Sum_probs=51.2
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccCh-hhHHHhhhccC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT-KKFESLIHKLG 430 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~-~~Ie~l~~~~g 430 (488)
..+.+|||+-||.|++...+.+. |-. ..++++|+++ .... ....+...|+.+... +.+.... ..+
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~-~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~-~~~ 87 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGK-GRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERV-GDS 87 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTT-CEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHH-TTC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCC-CeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccC-CCC
Confidence 35678999999999999988776 422 2367899998 4211 122245677766431 1111111 125
Q ss_pred CccEEEecCCCCCcc
Q 011347 431 SIDFVICQNSVPQIP 445 (488)
Q Consensus 431 ~~DLVIGGpPCQ~FS 445 (488)
.+|+|+..+|+..+.
T Consensus 88 ~~D~i~~~~~~~~~~ 102 (180)
T 1ej0_A 88 KVQVVMSDMAPNMSG 102 (180)
T ss_dssp CEEEEEECCCCCCCS
T ss_pred ceeEEEECCCccccC
Confidence 799999999887654
No 220
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=93.80 E-value=0.046 Score=52.53 Aligned_cols=76 Identities=21% Similarity=0.087 Sum_probs=54.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+-+|||+.||.|.++..|.+.|- .-|+++|+|+.....++.. ......++.+|+.+++-.++ .+ ..
T Consensus 31 ~~~~VLDiG~G~G~lt~~L~~~~~--~~v~avEid~~~~~~~~~~----~~~~v~~i~~D~~~~~~~~~------~~-~~ 97 (249)
T 3ftd_A 31 EGNTVVEVGGGTGNLTKVLLQHPL--KKLYVIELDREMVENLKSI----GDERLEVINEDASKFPFCSL------GK-EL 97 (249)
T ss_dssp TTCEEEEEESCHHHHHHHHTTSCC--SEEEEECCCHHHHHHHTTS----CCTTEEEECSCTTTCCGGGS------CS-SE
T ss_pred CcCEEEEEcCchHHHHHHHHHcCC--CeEEEEECCHHHHHHHHhc----cCCCeEEEEcchhhCChhHc------cC-Cc
Confidence 456899999999999999988862 2478999999988877642 12223467789988874432 12 33
Q ss_pred EEEecCCCC
Q 011347 434 FVICQNSVP 442 (488)
Q Consensus 434 LVIGGpPCQ 442 (488)
+|+|-+|=+
T Consensus 98 ~vv~NlPy~ 106 (249)
T 3ftd_A 98 KVVGNLPYN 106 (249)
T ss_dssp EEEEECCTT
T ss_pred EEEEECchh
Confidence 777877753
No 221
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=93.77 E-value=0.18 Score=44.79 Aligned_cols=75 Identities=20% Similarity=0.106 Sum_probs=50.6
Q ss_pred CCCCcccccCCCCChh-HHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347 353 PGGLTMLSVFSGIGGA-EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 353 p~~itVLDLFSGiGGl-slGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
+.+.+|||+-||.|.+ ...+...|.+ ++++|+++.+.+..+......+ ....+...|+.++.. ..+.
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~~~---v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~--------~~~~ 89 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDGYK---TYGIEISDLQLKKAENFSRENN-FKLNISKGDIRKLPF--------KDES 89 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTTCE---EEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTSCCS--------CTTC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCE---EEEEECCHHHHHHHHHHHHhcC-CceEEEECchhhCCC--------CCCc
Confidence 3467999999999887 3455677764 6889999998887776544322 223356678776541 1146
Q ss_pred ccEEEecC
Q 011347 432 IDFVICQN 439 (488)
Q Consensus 432 ~DLVIGGp 439 (488)
+|+|+...
T Consensus 90 fD~v~~~~ 97 (209)
T 2p8j_A 90 MSFVYSYG 97 (209)
T ss_dssp EEEEEECS
T ss_pred eeEEEEcC
Confidence 89988653
No 222
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=93.73 E-value=0.16 Score=48.97 Aligned_cols=73 Identities=15% Similarity=0.222 Sum_probs=50.8
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG 430 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g 430 (488)
+.+.+|||+-||.|++...+.+. |.+ |+++|+++......+......+.. ...+..+|+.++. +
T Consensus 89 ~~~~~vLDiGcG~G~~~~~la~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~ 154 (318)
T 2fk8_A 89 KPGMTLLDIGCGWGTTMRRAVERFDVN---VIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA-----------E 154 (318)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC-----------C
T ss_pred CCcCEEEEEcccchHHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC-----------C
Confidence 35679999999999999888776 863 688999999888777654432211 1224556665542 4
Q ss_pred CccEEEecC
Q 011347 431 SIDFVICQN 439 (488)
Q Consensus 431 ~~DLVIGGp 439 (488)
.||+|+...
T Consensus 155 ~fD~v~~~~ 163 (318)
T 2fk8_A 155 PVDRIVSIE 163 (318)
T ss_dssp CCSEEEEES
T ss_pred CcCEEEEeC
Confidence 688887654
No 223
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=93.71 E-value=0.11 Score=47.74 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=49.4
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
..+.+|||+.||.|+++..|.+. |-. ..|+++|+++.+...+...-.. + ....+..+|+.+... +. ...+.
T Consensus 76 ~~~~~vLDlG~G~G~~~~~la~~~g~~-~~v~gvD~s~~~i~~~~~~a~~-~-~~v~~~~~d~~~~~~--~~---~~~~~ 147 (233)
T 2ipx_A 76 KPGAKVLYLGAASGTTVSHVSDIVGPD-GLVYAVEFSHRSGRDLINLAKK-R-TNIIPVIEDARHPHK--YR---MLIAM 147 (233)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEECCCHHHHHHHHHHHHH-C-TTEEEECSCTTCGGG--GG---GGCCC
T ss_pred CCCCEEEEEcccCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHhhc-c-CCeEEEEcccCChhh--hc---ccCCc
Confidence 34678999999999999888765 311 2378999998754433332211 1 233356678775321 11 01257
Q ss_pred ccEEEecCC
Q 011347 432 IDFVICQNS 440 (488)
Q Consensus 432 ~DLVIGGpP 440 (488)
||+|+..+|
T Consensus 148 ~D~V~~~~~ 156 (233)
T 2ipx_A 148 VDVIFADVA 156 (233)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEcCC
Confidence 999997555
No 224
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=93.67 E-value=0.14 Score=45.80 Aligned_cols=76 Identities=14% Similarity=0.101 Sum_probs=50.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||+-||.|.+...|.+.|.+ ++++|+++...+..+.. ....+...|+.++..... ...+.||
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~----~~~~~fD 118 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADRGIE---AVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKV----PVGKDYD 118 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTTTCE---EEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCS----CCCCCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCCE---EEEEcCCHHHHHHHHHh------cccccchhhHHhhccccc----ccCCCcc
Confidence 3488999999999999999998874 67899999987776642 122244556554421100 0113488
Q ss_pred EEEecCCCC
Q 011347 434 FVICQNSVP 442 (488)
Q Consensus 434 LVIGGpPCQ 442 (488)
+|+......
T Consensus 119 ~v~~~~~l~ 127 (227)
T 3e8s_A 119 LICANFALL 127 (227)
T ss_dssp EEEEESCCC
T ss_pred EEEECchhh
Confidence 888765443
No 225
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=93.67 E-value=0.12 Score=49.71 Aligned_cols=75 Identities=16% Similarity=0.193 Sum_probs=52.3
Q ss_pred CCCCCcccccCCCCChhHHHHHHc----CCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhh
Q 011347 352 FPGGLTMLSVFSGIGGAEVTLHRL----GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLI 426 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlslGL~~a----Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~ 426 (488)
.+.+.+||||=||.|.++..|.+. |. -|++||+++...+..+......+.. ...++.+|+.++..
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~---~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~------- 137 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNC---KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI------- 137 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC-------
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCC---EEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc-------
Confidence 456789999999999999888764 43 3689999999877776654433221 22256688877642
Q ss_pred hccCCccEEEecC
Q 011347 427 HKLGSIDFVICQN 439 (488)
Q Consensus 427 ~~~g~~DLVIGGp 439 (488)
+++|+|+...
T Consensus 138 ---~~~d~v~~~~ 147 (261)
T 4gek_A 138 ---ENASMVVLNF 147 (261)
T ss_dssp ---CSEEEEEEES
T ss_pred ---cccccceeee
Confidence 4688888654
No 226
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=93.66 E-value=0.12 Score=46.16 Aligned_cols=72 Identities=18% Similarity=0.193 Sum_probs=48.6
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
..+.+|||+-||.|.+...+.+.|. .++++|+++......+... ..+...|+.++... + ..+.+
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~~~~~-~-----~~~~f 94 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENGT---RVSGIEAFPEAAEQAKEKL-------DHVVLGDIETMDMP-Y-----EEEQF 94 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTTC---EEEEEESSHHHHHHHHTTS-------SEEEESCTTTCCCC-S-----CTTCE
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhC-------CcEEEcchhhcCCC-C-----CCCcc
Confidence 4678999999999999999988874 3788999999876665321 12455676643211 0 11467
Q ss_pred cEEEecCC
Q 011347 433 DFVICQNS 440 (488)
Q Consensus 433 DLVIGGpP 440 (488)
|+|+....
T Consensus 95 D~v~~~~~ 102 (230)
T 3cc8_A 95 DCVIFGDV 102 (230)
T ss_dssp EEEEEESC
T ss_pred CEEEECCh
Confidence 88776543
No 227
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=93.56 E-value=0.13 Score=51.27 Aligned_cols=75 Identities=16% Similarity=0.121 Sum_probs=51.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+.+|||+-||.|.+++.+.++|. .-|+++|+++ .....+......+. ....++.+|+.++... .+.+
T Consensus 64 ~~~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--------~~~~ 132 (340)
T 2fyt_A 64 KDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLP--------VEKV 132 (340)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCS--------CSCE
T ss_pred CCCEEEEeeccCcHHHHHHHHcCC--CEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCC--------CCcE
Confidence 456899999999999999999985 3478999997 55555554433222 2233566788766311 1479
Q ss_pred cEEEecC
Q 011347 433 DFVICQN 439 (488)
Q Consensus 433 DLVIGGp 439 (488)
|+|+...
T Consensus 133 D~Ivs~~ 139 (340)
T 2fyt_A 133 DVIISEW 139 (340)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 9999643
No 228
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=93.54 E-value=0.17 Score=46.59 Aligned_cols=74 Identities=9% Similarity=0.014 Sum_probs=52.7
Q ss_pred CCCCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 430 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g 430 (488)
..+.+|||+-||.|.+...+.+. |.. ++++|+++......+.. .....+..+|+.++.. .+
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~---v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~---------~~ 94 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVNV---ITGIDSDDDMLEKAADR-----LPNTNFGKADLATWKP---------AQ 94 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTTS---EEEEESCHHHHHHHHHH-----STTSEEEECCTTTCCC---------SS
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCE---EEEEECCHHHHHHHHHh-----CCCcEEEECChhhcCc---------cC
Confidence 35678999999999999988877 653 68899999987777653 1223356678776541 14
Q ss_pred CccEEEecCCCCC
Q 011347 431 SIDFVICQNSVPQ 443 (488)
Q Consensus 431 ~~DLVIGGpPCQ~ 443 (488)
.||+|+.....+-
T Consensus 95 ~fD~v~~~~~l~~ 107 (259)
T 2p35_A 95 KADLLYANAVFQW 107 (259)
T ss_dssp CEEEEEEESCGGG
T ss_pred CcCEEEEeCchhh
Confidence 6888887654443
No 229
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=93.54 E-value=0.068 Score=51.21 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=37.4
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHh
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 399 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~ 399 (488)
..+-.|||+|||.|...++..++|-+ ++++|+++.+..+.+...
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~gr~---~ig~e~~~~~~~~~~~r~ 254 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKLGRN---FIGCDMNAEYVNQANFVL 254 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCCe---EEEEeCCHHHHHHHHHHH
Confidence 45678999999999999999999964 678999999888776644
No 230
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=93.54 E-value=0.15 Score=47.98 Aligned_cols=82 Identities=12% Similarity=0.149 Sum_probs=55.7
Q ss_pred CCCcccccCCCCChhHHHHHHc---CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL 429 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a---Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~ 429 (488)
.+.+|||+-||.|+.+..+-++ +. .|+++|+++...+..+.++...+... ..+..+|+.+. +..+ ...
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----l~~~-~~~ 134 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADG---QLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQS----LESL-GEC 134 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHTC-CSC
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHhc-CCC
Confidence 4578999999999999988876 43 37899999999888888776543322 22445665432 1111 112
Q ss_pred CCccEEEecCCCCC
Q 011347 430 GSIDFVICQNSVPQ 443 (488)
Q Consensus 430 g~~DLVIGGpPCQ~ 443 (488)
+.||+|+-..++..
T Consensus 135 ~~fD~V~~d~~~~~ 148 (248)
T 3tfw_A 135 PAFDLIFIDADKPN 148 (248)
T ss_dssp CCCSEEEECSCGGG
T ss_pred CCeEEEEECCchHH
Confidence 47999997766654
No 231
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=93.49 E-value=0.2 Score=47.35 Aligned_cols=73 Identities=15% Similarity=0.272 Sum_probs=50.3
Q ss_pred CCCCcccccCCCCChhHHHHH-HcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG 430 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~-~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g 430 (488)
+.+.+|||+-||.|++...+. ..|. .|+++|+++......+......+.. ...+..+|+.++. +
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~ 128 (287)
T 1kpg_A 63 QPGMTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-----------E 128 (287)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-----------C
T ss_pred CCcCEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-----------C
Confidence 356799999999999998876 6676 3688999999888777654432211 2224556665443 4
Q ss_pred CccEEEecC
Q 011347 431 SIDFVICQN 439 (488)
Q Consensus 431 ~~DLVIGGp 439 (488)
.||+|+...
T Consensus 129 ~fD~v~~~~ 137 (287)
T 1kpg_A 129 PVDRIVSIG 137 (287)
T ss_dssp CCSEEEEES
T ss_pred CeeEEEEeC
Confidence 688887543
No 232
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.49 E-value=0.062 Score=44.48 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=32.9
Q ss_pred hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347 2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 41 (488)
Q Consensus 2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~ 41 (488)
+++.+|++|||++++|..|+..++. .++.-++.|+..+
T Consensus 31 ~~i~~L~~MGF~~~~a~~AL~~t~~--nve~A~ewL~~~~ 68 (83)
T 2dai_A 31 AALRQLTEMGFPENRATKALQLNHM--SVPQAMEWLIEHA 68 (83)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTS--CHHHHHHHHHHGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC--CHHHHHHHHHHCC
Confidence 3567899999999999999999964 6888899999876
No 233
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=93.49 E-value=0.049 Score=52.53 Aligned_cols=79 Identities=15% Similarity=0.101 Sum_probs=51.9
Q ss_pred cCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhcc
Q 011347 351 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL 429 (488)
Q Consensus 351 ~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~ 429 (488)
..+.+.+|||+-||.|.+...+..+..+-..|+++|+++......+.+....+..+ ..++.+|+.++.. .
T Consensus 115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~- 185 (305)
T 3ocj_A 115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT--------R- 185 (305)
T ss_dssp HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC--------C-
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc--------c-
Confidence 34567899999999999988873121112247899999999888877654322111 2245677776542 1
Q ss_pred CCccEEEec
Q 011347 430 GSIDFVICQ 438 (488)
Q Consensus 430 g~~DLVIGG 438 (488)
+.||+|+..
T Consensus 186 ~~fD~v~~~ 194 (305)
T 3ocj_A 186 EGYDLLTSN 194 (305)
T ss_dssp SCEEEEECC
T ss_pred CCeEEEEEC
Confidence 478888853
No 234
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=93.43 E-value=0.17 Score=48.75 Aligned_cols=52 Identities=13% Similarity=0.173 Sum_probs=39.3
Q ss_pred hhccccccCCCCCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHH
Q 011347 344 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRW 398 (488)
Q Consensus 344 ~lsvLK~~fp~~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~ 398 (488)
.++.|......+.+|||+-||.|.+...+.+. +. .|+++|+++......+..
T Consensus 36 ~l~~l~~~~~~~~~VLDiGCG~G~~~~~la~~~~~~---~v~gvDis~~~i~~A~~~ 89 (292)
T 3g07_A 36 RLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPS---RMVGLDIDSRLIHSARQN 89 (292)
T ss_dssp GGGTSCGGGTTTSEEEEESCTTCHHHHHHHHHTCCS---EEEEEESCHHHHHHHHHT
T ss_pred HHHhhhhhhcCCCcEEEeCCCCCHHHHHHHHHcCCC---EEEEECCCHHHHHHHHHH
Confidence 34455544345789999999999999988876 43 478999999987776654
No 235
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=93.40 E-value=0.19 Score=48.05 Aligned_cols=83 Identities=16% Similarity=0.102 Sum_probs=55.1
Q ss_pred CCCCcccccCCCCChhHHHHHH---cCCeeeeEEEeeCCHHHHHHHHHHhhhc--CCCCCcceeccccccChhhHHHhhh
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHR---LGIKLKGVISIETSETNRRILKRWWESS--GQTGELVQIEDIQALTTKKFESLIH 427 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~---aGi~~k~vvsVEid~~a~~t~~~~~~~~--n~~g~lv~~~DI~~L~~~~Ie~l~~ 427 (488)
..+.+|||+-||.|.+...|.+ .+ ..|+++|+++......+...... ......++.+|+.++....-..+
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-- 109 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPF---EQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSV-- 109 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCC---SEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTT--
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCC---CEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccc--
Confidence 3678999999999999999884 33 34789999999888777654332 12233456788877652210000
Q ss_pred ccCCccEEEecCC
Q 011347 428 KLGSIDFVICQNS 440 (488)
Q Consensus 428 ~~g~~DLVIGGpP 440 (488)
..+.||+|+....
T Consensus 110 ~~~~fD~V~~~~~ 122 (299)
T 3g5t_A 110 DKQKIDMITAVEC 122 (299)
T ss_dssp TSSCEEEEEEESC
T ss_pred cCCCeeEEeHhhH
Confidence 1257999987653
No 236
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=93.33 E-value=0.11 Score=49.56 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=53.3
Q ss_pred CCCCcccccCCCCChhHHHHHHc---CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhcc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 429 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~a---Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~ 429 (488)
..+.+|||+-||.|.+...|.+. |. .|+++|+++......+......+ ....+..+|+.++.. .
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~-~~v~~~~~d~~~~~~---------~ 87 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLP-YDSEFLEGDATEIEL---------N 87 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEESCHHHHHHHHHHHHSSS-SEEEEEESCTTTCCC---------S
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHhcC-CceEEEEcchhhcCc---------C
Confidence 35689999999999999998776 44 36889999998887776543221 123356688876542 1
Q ss_pred CCccEEEecCC
Q 011347 430 GSIDFVICQNS 440 (488)
Q Consensus 430 g~~DLVIGGpP 440 (488)
+.||+|+....
T Consensus 88 ~~fD~v~~~~~ 98 (284)
T 3gu3_A 88 DKYDIAICHAF 98 (284)
T ss_dssp SCEEEEEEESC
T ss_pred CCeeEEEECCh
Confidence 47999987553
No 237
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=93.33 E-value=0.068 Score=49.30 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=36.6
Q ss_pred ccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHH
Q 011347 350 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK 396 (488)
Q Consensus 350 ~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~ 396 (488)
+.++.+.+|||+-||.|.+...|.+.|.+ |+++|+++......+
T Consensus 37 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~ 80 (240)
T 3dli_A 37 PYFKGCRRVLDIGCGRGEFLELCKEEGIE---SIGVDINEDMIKFCE 80 (240)
T ss_dssp GGTTTCSCEEEETCTTTHHHHHHHHHTCC---EEEECSCHHHHHHHH
T ss_pred hhhcCCCeEEEEeCCCCHHHHHHHhCCCc---EEEEECCHHHHHHHH
Confidence 34456789999999999999999998875 588999999776654
No 238
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=93.31 E-value=0.074 Score=57.05 Aligned_cols=80 Identities=18% Similarity=0.079 Sum_probs=49.3
Q ss_pred CcccccCCCCChhHHHHHHc--------CC------eeeeEEEeeCCHHHHHHHHHHhhhcCCCCCc-ceeccccccChh
Q 011347 356 LTMLSVFSGIGGAEVTLHRL--------GI------KLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTK 420 (488)
Q Consensus 356 itVLDLFSGiGGlslGL~~a--------Gi------~~k~vvsVEid~~a~~t~~~~~~~~n~~g~l-v~~~DI~~L~~~ 420 (488)
.+|+|.+||.|||-+.+.+. +. .-..++++|+++.+.++.+.+..-++....+ +..+|.-....
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~- 324 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ- 324 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS-
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc-
Confidence 48999999999998775321 10 0135789999999988877654333222211 13444321110
Q ss_pred hHHHhhhccCCccEEEecCCCC
Q 011347 421 KFESLIHKLGSIDFVICQNSVP 442 (488)
Q Consensus 421 ~Ie~l~~~~g~~DLVIGGpPCQ 442 (488)
.....||+|++=||=.
T Consensus 325 ------~~~~~fD~Iv~NPPf~ 340 (544)
T 3khk_A 325 ------HPDLRADFVMTNPPFN 340 (544)
T ss_dssp ------CTTCCEEEEEECCCSS
T ss_pred ------cccccccEEEECCCcC
Confidence 0125799999999854
No 239
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=93.28 E-value=0.082 Score=49.40 Aligned_cols=82 Identities=12% Similarity=0.106 Sum_probs=53.2
Q ss_pred CCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-C-CcceeccccccChhhHHHhhhccCC
Q 011347 355 GLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-G-ELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g-~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
+.+|||+-||.|..++.|-++ +-. ..|+++|+++...+..+.++...+.. . ..++.+|..++-. .+ ..+.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~----~~--~~~~ 129 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADN-TTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMS----RL--ANDS 129 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTT-SEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGG----GS--CTTC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHH----Hh--cCCC
Confidence 458999999999999988763 211 23789999999999998888654332 1 2234455543211 11 0268
Q ss_pred ccEEEecCCCCC
Q 011347 432 IDFVICQNSVPQ 443 (488)
Q Consensus 432 ~DLVIGGpPCQ~ 443 (488)
||+|+-..+...
T Consensus 130 fD~V~~d~~~~~ 141 (221)
T 3dr5_A 130 YQLVFGQVSPMD 141 (221)
T ss_dssp EEEEEECCCTTT
T ss_pred cCeEEEcCcHHH
Confidence 999987655443
No 240
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=93.08 E-value=0.18 Score=49.82 Aligned_cols=76 Identities=18% Similarity=0.196 Sum_probs=51.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+.+|||+-||.|.+++.+.++|. .-|+++|+++ .....+......+..+ ..++.+|+.++... .+.+
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~g~--~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--------~~~~ 106 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLP--------FPKV 106 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCS--------SSCE
T ss_pred CCCEEEEecCccHHHHHHHHHCCC--CEEEEEChHH-HHHHHHHHHHHcCCCCCEEEEECchhhccCC--------CCcc
Confidence 456899999999999999999885 3478999995 4444454433322212 23556787766411 1479
Q ss_pred cEEEecCC
Q 011347 433 DFVICQNS 440 (488)
Q Consensus 433 DLVIGGpP 440 (488)
|+|+..++
T Consensus 107 D~Ivs~~~ 114 (328)
T 1g6q_1 107 DIIISEWM 114 (328)
T ss_dssp EEEEECCC
T ss_pred cEEEEeCc
Confidence 99997654
No 241
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=93.01 E-value=0.077 Score=46.57 Aligned_cols=36 Identities=25% Similarity=0.405 Sum_probs=33.0
Q ss_pred hhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347 4 TLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 41 (488)
Q Consensus 4 ~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~ 41 (488)
+.+|++||||++.+..|+.++|. .++...+.|++-+
T Consensus 12 v~~l~~MGFp~~~~~kAl~~~g~--~~e~amewL~~h~ 47 (118)
T 4ae4_A 12 VETVVNMGYSYECVLRAMKAAGA--NIEQILDYLFAHG 47 (118)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHCS--CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHCc--CHHHHHHHHHHhc
Confidence 46899999999999999999998 7999999999874
No 242
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=92.85 E-value=0.054 Score=52.21 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=52.9
Q ss_pred ccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHh
Q 011347 346 SVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL 425 (488)
Q Consensus 346 svLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l 425 (488)
..|..+.+.+-+||||=||.|.++..|...|.+ |++||+++...+..+ .+++..+..+|+.++.-
T Consensus 31 ~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~~---v~gvD~s~~ml~~a~------~~~~v~~~~~~~e~~~~------ 95 (257)
T 4hg2_A 31 RWLGEVAPARGDALDCGCGSGQASLGLAEFFER---VHAVDPGEAQIRQAL------RHPRVTYAVAPAEDTGL------ 95 (257)
T ss_dssp HHHHHHSSCSSEEEEESCTTTTTHHHHHTTCSE---EEEEESCHHHHHTCC------CCTTEEEEECCTTCCCC------
T ss_pred HHHHHhcCCCCCEEEEcCCCCHHHHHHHHhCCE---EEEEeCcHHhhhhhh------hcCCceeehhhhhhhcc------
Confidence 334445566778999999999999999999864 689999998654332 12333456677766542
Q ss_pred hhccCCccEEEec
Q 011347 426 IHKLGSIDFVICQ 438 (488)
Q Consensus 426 ~~~~g~~DLVIGG 438 (488)
.-+.||+|+.+
T Consensus 96 --~~~sfD~v~~~ 106 (257)
T 4hg2_A 96 --PPASVDVAIAA 106 (257)
T ss_dssp --CSSCEEEEEEC
T ss_pred --cCCcccEEEEe
Confidence 12579999874
No 243
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=92.85 E-value=0.13 Score=50.33 Aligned_cols=82 Identities=24% Similarity=0.260 Sum_probs=53.4
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhc------CC-----CCCcceeccccccChhh
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS------GQ-----TGELVQIEDIQALTTKK 421 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~------n~-----~g~lv~~~DI~~L~~~~ 421 (488)
.+.+|||+.||.|.++..+.++ |-. ..|+++|+++.+.+..+.+.... |+ ....+..+|+.+... .
T Consensus 105 ~g~~VLDiG~G~G~~~~~la~~~g~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~-~ 182 (336)
T 2b25_A 105 PGDTVLEAGSGSGGMSLFLSKAVGSQ-GRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE-D 182 (336)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc-c
Confidence 5678999999999999998876 532 24789999999888877765431 11 122345677766531 1
Q ss_pred HHHhhhccCCccEEEecCCCC
Q 011347 422 FESLIHKLGSIDFVICQNSVP 442 (488)
Q Consensus 422 Ie~l~~~~g~~DLVIGGpPCQ 442 (488)
++ .+.||+|+...|+.
T Consensus 183 ~~-----~~~fD~V~~~~~~~ 198 (336)
T 2b25_A 183 IK-----SLTFDAVALDMLNP 198 (336)
T ss_dssp ----------EEEEEECSSST
T ss_pred cC-----CCCeeEEEECCCCH
Confidence 11 14699999776654
No 244
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=92.84 E-value=0.11 Score=39.28 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=29.2
Q ss_pred hhhhhHHhcCC-CHHHHHHHHHHhCCCCchhhhhhhhhh
Q 011347 2 EITLQLLEMGF-SENQVSLAIEKFGSKTPISELADKIFS 39 (488)
Q Consensus 2 ~k~~~l~~mgf-~~~e~~~ai~~~g~~~~~~~l~d~i~a 39 (488)
+++..|++||| +++.+..|+..+|-+ ++.-++.++.
T Consensus 14 ~~l~~L~~MGF~~~~~~~~AL~~t~gn--~e~A~e~L~~ 50 (52)
T 2jy5_A 14 QQLEQLSAMGFLNREANLQALIATGGD--INAAIERLLG 50 (52)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHTTC--HHHHHHHHTT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHh
Confidence 46789999999 888889999999874 6666776664
No 245
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=92.77 E-value=0.16 Score=53.57 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=50.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+.+|||+-||.|.+++.+.+.|. .-|+++|+++ .....+......+. ....++.+|+.++.. .+.|
T Consensus 158 ~~~~VLDiGcGtG~la~~la~~~~--~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~---------~~~f 225 (480)
T 3b3j_A 158 KDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL---------PEQV 225 (480)
T ss_dssp TTCEEEEESCSTTHHHHHHHHTTC--SEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC---------SSCE
T ss_pred CCCEEEEecCcccHHHHHHHHcCC--CEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCcc---------CCCe
Confidence 457899999999999999988874 3478999998 54555544333222 123356678776531 1479
Q ss_pred cEEEecCC
Q 011347 433 DFVICQNS 440 (488)
Q Consensus 433 DLVIGGpP 440 (488)
|+|+..+|
T Consensus 226 D~Ivs~~~ 233 (480)
T 3b3j_A 226 DIIISEPM 233 (480)
T ss_dssp EEEECCCC
T ss_pred EEEEEeCc
Confidence 99997554
No 246
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=92.63 E-value=0.17 Score=47.90 Aligned_cols=76 Identities=20% Similarity=0.233 Sum_probs=49.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC----CCCcceeccccccChhhHHHhhhcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ----TGELVQIEDIQALTTKKFESLIHKL 429 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~----~g~lv~~~DI~~L~~~~Ie~l~~~~ 429 (488)
.+.+|||+-||.|.+...|...|.+ |+++|+++...+..+........ ....+..+|+.++..+ + -..
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~----~~~ 128 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEGFS---VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD-V----PAG 128 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH-S----CCT
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccc-c----ccC
Confidence 4578999999999999999999973 68999999988777653211111 0111344555544311 0 112
Q ss_pred CCccEEEe
Q 011347 430 GSIDFVIC 437 (488)
Q Consensus 430 g~~DLVIG 437 (488)
+.||+|+.
T Consensus 129 ~~fD~V~~ 136 (293)
T 3thr_A 129 DGFDAVIC 136 (293)
T ss_dssp TCEEEEEE
T ss_pred CCeEEEEE
Confidence 57999986
No 247
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=92.52 E-value=0.013 Score=55.27 Aligned_cols=77 Identities=14% Similarity=0.040 Sum_probs=50.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||+.||.|+++..|.+.|. -|+++|+|+......+.... ......++.+|+.++.-. ..+.+
T Consensus 29 ~~~~VLDiG~G~G~~~~~l~~~~~---~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~-------~~~~f- 95 (245)
T 1yub_A 29 ETDTVYEIGTGKGHLTTKLAKISK---QVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFP-------NKQRY- 95 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHHSS---EEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCC-------CSSEE-
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCcc-------cCCCc-
Confidence 567899999999999999988883 37899999987555433211 111223556788766421 01356
Q ss_pred EEEecCCCCC
Q 011347 434 FVICQNSVPQ 443 (488)
Q Consensus 434 LVIGGpPCQ~ 443 (488)
+|++-+|-..
T Consensus 96 ~vv~n~Py~~ 105 (245)
T 1yub_A 96 KIVGNIPYHL 105 (245)
T ss_dssp EEEEECCSSS
T ss_pred EEEEeCCccc
Confidence 7788887553
No 248
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=92.43 E-value=0.19 Score=51.69 Aligned_cols=71 Identities=18% Similarity=0.223 Sum_probs=47.6
Q ss_pred CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCcc
Q 011347 355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
+-+|||+=||.|-+++-..++|-. -|++||.++.+..+ +..-..++... ..++.+|+.++.. ..++|
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA~--~V~ave~s~~~~~a-~~~~~~n~~~~~i~~i~~~~~~~~l---------pe~~D 151 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGAR--RVYAVEASAIWQQA-REVVRFNGLEDRVHVLPGPVETVEL---------PEQVD 151 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCS--EEEEEECSTTHHHH-HHHHHHTTCTTTEEEEESCTTTCCC---------SSCEE
T ss_pred CCEEEEeCCCccHHHHHHHHhCCC--EEEEEeChHHHHHH-HHHHHHcCCCceEEEEeeeeeeecC---------Ccccc
Confidence 457999999999999988999974 48899999754322 22222222222 2256678877642 24799
Q ss_pred EEEe
Q 011347 434 FVIC 437 (488)
Q Consensus 434 LVIG 437 (488)
+||.
T Consensus 152 vivs 155 (376)
T 4hc4_A 152 AIVS 155 (376)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9984
No 249
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=92.42 E-value=0.13 Score=42.83 Aligned_cols=42 Identities=17% Similarity=0.338 Sum_probs=33.9
Q ss_pred hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhccccCC
Q 011347 2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLD 45 (488)
Q Consensus 2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~~~~~ 45 (488)
+++.+|++|||++++|..|+..++-+ ++.-++.++......+
T Consensus 23 ~~I~qL~~MGF~~~~a~~AL~~~n~n--~e~A~ewL~~h~~D~D 64 (85)
T 2dkl_A 23 RLIKQLTDMGFPREPAEEALKSNNMN--LDQAMSALLEKKVDVD 64 (85)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTSC--HHHHHHHHHTTSCCSS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHHCcCCcc
Confidence 45688999999999999999777654 7778899998765444
No 250
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=92.40 E-value=0.26 Score=45.63 Aligned_cols=62 Identities=10% Similarity=0.231 Sum_probs=42.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-Ccceecccc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQ 415 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~ 415 (488)
.+.+|||+-||.|..+..|.+..=.-..|+++|+++...+..+.++...+... ..+..+|+.
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~ 122 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSAL 122 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHH
Confidence 45689999999999999887762001247899999999888887765432211 223445554
No 251
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=92.39 E-value=0.11 Score=51.13 Aligned_cols=81 Identities=16% Similarity=0.239 Sum_probs=54.3
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhc----CCCCCcceeccccccChhhHHHhhhc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK 428 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~----n~~g~lv~~~DI~~L~~~~Ie~l~~~ 428 (488)
+++.+||||.||.|++...+.+.+ ....+.+||+|+...+..+.++... +.....++.+|..+. ++ ..
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~----l~---~~ 165 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEF----MK---QN 165 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH----HH---TC
T ss_pred CCCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHH----Hh---hC
Confidence 456789999999999999887764 2245789999999998888876431 112223455665432 11 11
Q ss_pred cCCccEEEecCCC
Q 011347 429 LGSIDFVICQNSV 441 (488)
Q Consensus 429 ~g~~DLVIGGpPC 441 (488)
.+.+|+|+..+|.
T Consensus 166 ~~~fD~Ii~d~~~ 178 (304)
T 2o07_A 166 QDAFDVIITDSSD 178 (304)
T ss_dssp SSCEEEEEEECC-
T ss_pred CCCceEEEECCCC
Confidence 3579999987664
No 252
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=92.27 E-value=0.2 Score=47.29 Aligned_cols=86 Identities=12% Similarity=0.113 Sum_probs=52.0
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhh------cCCCCCcceeccccccChhhHHHhh
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES------SGQTGELVQIEDIQALTTKKFESLI 426 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~------~n~~g~lv~~~DI~~L~~~~Ie~l~ 426 (488)
..+.+|||+=||.|.+...|.+..=. ..++++|+++......+..... .......++.+|+.+. +...+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~-~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~----l~~~~ 119 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPD-TLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKH----LPNFF 119 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTT-SEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTC----HHHHC
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHh----hhhhC
Confidence 34578999999999999998766311 2478999999887655543211 1122233566777652 11111
Q ss_pred hccCCccEEEecCCCCCc
Q 011347 427 HKLGSIDFVICQNSVPQI 444 (488)
Q Consensus 427 ~~~g~~DLVIGGpPCQ~F 444 (488)
..+.+|+|+-.+|..-+
T Consensus 120 -~~~~~D~v~~~~~dp~~ 136 (235)
T 3ckk_A 120 -YKGQLTKMFFLFPDPHF 136 (235)
T ss_dssp -CTTCEEEEEEESCC---
T ss_pred -CCcCeeEEEEeCCCchh
Confidence 12579999877765443
No 253
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=92.23 E-value=0.31 Score=45.98 Aligned_cols=70 Identities=14% Similarity=0.191 Sum_probs=51.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+.+|||+=||.|.+...|...|.. |+++|+++......+... ....+..+|+.++.. .+.||
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~---------~~~fD 119 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQSGAE---VLGTDNAATMIEKARQNY-----PHLHFDVADARNFRV---------DKPLD 119 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCC---------SSCEE
T ss_pred CCCEEEEecCCCCHHHHHHHhCCCe---EEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCc---------CCCcC
Confidence 4678999999999999999887753 688999999887776532 223356678876542 14689
Q ss_pred EEEecCC
Q 011347 434 FVICQNS 440 (488)
Q Consensus 434 LVIGGpP 440 (488)
+|+....
T Consensus 120 ~v~~~~~ 126 (279)
T 3ccf_A 120 AVFSNAM 126 (279)
T ss_dssp EEEEESC
T ss_pred EEEEcch
Confidence 8887654
No 254
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=92.23 E-value=0.3 Score=46.25 Aligned_cols=76 Identities=18% Similarity=0.254 Sum_probs=51.2
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG 430 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g 430 (488)
+.+.+|||+-||.|.+...|.+. |.+ ++++|+++......+......+.. ...+..+|+.++.- ..+
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~ 149 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKFGVS---IDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC--------EDN 149 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS--------CTT
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCE---EEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCC--------CCC
Confidence 45679999999999999988776 763 688999999877766544332211 12345677766531 114
Q ss_pred CccEEEecC
Q 011347 431 SIDFVICQN 439 (488)
Q Consensus 431 ~~DLVIGGp 439 (488)
.||+|+...
T Consensus 150 ~fD~v~~~~ 158 (297)
T 2o57_A 150 SYDFIWSQD 158 (297)
T ss_dssp CEEEEEEES
T ss_pred CEeEEEecc
Confidence 678777543
No 255
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=92.14 E-value=0.27 Score=50.24 Aligned_cols=88 Identities=15% Similarity=0.135 Sum_probs=57.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCc-ceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~l-v~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+.+|||++||.||=+..+-.++-. ..|+|+|+++.-.+.++.+-......... ...-.|...+...+... ..+.|
T Consensus 148 pg~~VLD~CAaPGGKT~~la~~~~~-~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~--~~~~f 224 (359)
T 4fzv_A 148 PGDIVLDLCAAPGGKTLALLQTGCC-RNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGEL--EGDTY 224 (359)
T ss_dssp TTEEEEESSCTTCHHHHHHHHTTCE-EEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHH--STTCE
T ss_pred CCCEEEEecCCccHHHHHHHHhcCC-CcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchh--ccccC
Confidence 4678999999999999988887743 45889999999888877655432211000 00112333344333321 23579
Q ss_pred cEEEecCCCCCc
Q 011347 433 DFVICQNSVPQI 444 (488)
Q Consensus 433 DLVIGGpPCQ~F 444 (488)
|.|+-=+||.+-
T Consensus 225 D~VLlDaPCSg~ 236 (359)
T 4fzv_A 225 DRVLVDVPCTTD 236 (359)
T ss_dssp EEEEEECCCCCH
T ss_pred CEEEECCccCCC
Confidence 999999999863
No 256
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=92.10 E-value=0.17 Score=49.14 Aligned_cols=81 Identities=22% Similarity=0.231 Sum_probs=54.0
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcC----CCCCcceeccccccChhhHHHhhhc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHK 428 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n----~~g~lv~~~DI~~L~~~~Ie~l~~~ 428 (488)
+++.+||+|-||.|++...+.+.. ....+.+||+|+...+..+.++...+ .+...++.+|+.+. +.. .
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~----l~~---~ 148 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF----LEN---V 148 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH----HHH---C
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHH----HHh---C
Confidence 456799999999999998887663 22457899999999988887654321 11222445665432 111 1
Q ss_pred cCCccEEEecCCC
Q 011347 429 LGSIDFVICQNSV 441 (488)
Q Consensus 429 ~g~~DLVIGGpPC 441 (488)
.+.+|+|+..++.
T Consensus 149 ~~~fD~Ii~d~~~ 161 (283)
T 2i7c_A 149 TNTYDVIIVDSSD 161 (283)
T ss_dssp CSCEEEEEEECCC
T ss_pred CCCceEEEEcCCC
Confidence 3579999986543
No 257
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=92.05 E-value=0.49 Score=44.04 Aligned_cols=79 Identities=23% Similarity=0.199 Sum_probs=53.6
Q ss_pred CCCcccccCCCCChhHHHHHH-cCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccCC
Q 011347 354 GGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~-aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
.+.+|||+-||.|.+...+.+ .|. .|+++|+++......+......+.. ...+..+|+.++.- ..+.
T Consensus 61 ~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~ 129 (273)
T 3bus_A 61 SGDRVLDVGCGIGKPAVRLATARDV---RVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPF--------EDAS 129 (273)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHSCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS--------CTTC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCC--------CCCC
Confidence 567999999999999988876 464 3688999999887777654433222 12355677776541 1147
Q ss_pred ccEEEecCCCCC
Q 011347 432 IDFVICQNSVPQ 443 (488)
Q Consensus 432 ~DLVIGGpPCQ~ 443 (488)
||+|+....-.-
T Consensus 130 fD~v~~~~~l~~ 141 (273)
T 3bus_A 130 FDAVWALESLHH 141 (273)
T ss_dssp EEEEEEESCTTT
T ss_pred ccEEEEechhhh
Confidence 999987554443
No 258
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=91.85 E-value=0.24 Score=46.27 Aligned_cols=71 Identities=13% Similarity=0.103 Sum_probs=49.4
Q ss_pred CCCCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 430 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g 430 (488)
+.+.+|||+-||.|.+...+.+. |. .++++|+++...+..+... ....+..+|+.++.. ..+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~--------~~~ 147 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPF--------SDT 147 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSB--------CTT
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCC---eEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCCC--------CCC
Confidence 45678999999999999888876 64 3788999999877766432 222355677765531 114
Q ss_pred CccEEEecC
Q 011347 431 SIDFVICQN 439 (488)
Q Consensus 431 ~~DLVIGGp 439 (488)
.||+|+...
T Consensus 148 ~fD~v~~~~ 156 (269)
T 1p91_A 148 SMDAIIRIY 156 (269)
T ss_dssp CEEEEEEES
T ss_pred ceeEEEEeC
Confidence 688887543
No 259
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=91.61 E-value=0.19 Score=49.63 Aligned_cols=81 Identities=17% Similarity=0.180 Sum_probs=54.8
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcC-----CCCCcceeccccccChhhHHHhhh
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALTTKKFESLIH 427 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n-----~~g~lv~~~DI~~L~~~~Ie~l~~ 427 (488)
+++.+||+|-||.|++...+.+.. ...-+.+||+|+...+..+.++...+ .+...++.+|+.+. ++.
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~----l~~--- 147 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY----LER--- 147 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH----HHH---
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHH----HHh---
Confidence 456799999999999998887652 12357899999999888887764311 12233456666542 111
Q ss_pred ccCCccEEEecCCC
Q 011347 428 KLGSIDFVICQNSV 441 (488)
Q Consensus 428 ~~g~~DLVIGGpPC 441 (488)
..+.+|+|+..++.
T Consensus 148 ~~~~fD~Ii~d~~~ 161 (314)
T 1uir_A 148 TEERYDVVIIDLTD 161 (314)
T ss_dssp CCCCEEEEEEECCC
T ss_pred cCCCccEEEECCCC
Confidence 23579999987654
No 260
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=91.60 E-value=0.25 Score=43.56 Aligned_cols=77 Identities=12% Similarity=0.090 Sum_probs=46.5
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCe-------eeeEEEeeCCHHHHHHHHHHhhhcCCCCCcce-eccccccChh-hH
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRL-GIK-------LKGVISIETSETNRRILKRWWESSGQTGELVQ-IEDIQALTTK-KF 422 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~a-Gi~-------~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~-~~DI~~L~~~-~I 422 (488)
+.+.+||||-||.|+++..+.+. |-. -..|+++|+++.+. .....+. .+|+.+.... .+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----------~~~~~~~~~~d~~~~~~~~~~ 89 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----------LEGATFLCPADVTDPRTSQRI 89 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----------CTTCEEECSCCTTSHHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc-----------CCCCeEEEeccCCCHHHHHHH
Confidence 45689999999999999988765 521 01378999998520 1122345 6777654321 11
Q ss_pred HHhhhccCCccEEEecCCC
Q 011347 423 ESLIHKLGSIDFVICQNSV 441 (488)
Q Consensus 423 e~l~~~~g~~DLVIGGpPC 441 (488)
.... .-+.||+|+...++
T Consensus 90 ~~~~-~~~~fD~V~~~~~~ 107 (196)
T 2nyu_A 90 LEVL-PGRRADVILSDMAP 107 (196)
T ss_dssp HHHS-GGGCEEEEEECCCC
T ss_pred HHhc-CCCCCcEEEeCCCC
Confidence 1111 11379999976543
No 261
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=91.58 E-value=0.19 Score=49.22 Aligned_cols=82 Identities=18% Similarity=0.181 Sum_probs=53.1
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhh---c-CCCCCcceeccccccChhhHHHhhhc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES---S-GQTGELVQIEDIQALTTKKFESLIHK 428 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~---~-n~~g~lv~~~DI~~L~~~~Ie~l~~~ 428 (488)
+++.+|||+-||.|++...+.+.. ....+++||+|+...+..+.+... . ......++.+|+.++... . .
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~----~--~ 166 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQ----T--P 166 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHS----S--C
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHh----c--c
Confidence 456799999999999999887762 224578999999998888876521 1 111222455666432110 0 1
Q ss_pred cCCccEEEecCCC
Q 011347 429 LGSIDFVICQNSV 441 (488)
Q Consensus 429 ~g~~DLVIGGpPC 441 (488)
.+.||+|+...|.
T Consensus 167 ~~~fDvIi~d~~~ 179 (304)
T 3bwc_A 167 DNTYDVVIIDTTD 179 (304)
T ss_dssp TTCEEEEEEECC-
T ss_pred CCceeEEEECCCC
Confidence 2579999986543
No 262
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=91.34 E-value=0.21 Score=49.68 Aligned_cols=80 Identities=23% Similarity=0.242 Sum_probs=52.7
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhc----CCCCCcceeccccccChhhHHHhhhc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK 428 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~----n~~g~lv~~~DI~~L~~~~Ie~l~~~ 428 (488)
+.+.+|||+-||.|++...+.+.. ....+.+||+|+.+.+..+.+.... +.....++.+|+.+. ++ ..
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~----l~---~~ 186 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF----LE---NV 186 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH----HH---HC
T ss_pred CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHH----Hh---hc
Confidence 355789999999999998887651 1235789999999999888765421 011222445665432 11 11
Q ss_pred cCCccEEEecCC
Q 011347 429 LGSIDFVICQNS 440 (488)
Q Consensus 429 ~g~~DLVIGGpP 440 (488)
.+.||+|+..++
T Consensus 187 ~~~fDvIi~d~~ 198 (321)
T 2pt6_A 187 TNTYDVIIVDSS 198 (321)
T ss_dssp CSCEEEEEEECC
T ss_pred CCCceEEEECCc
Confidence 257999998664
No 263
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=91.34 E-value=0.41 Score=44.79 Aligned_cols=83 Identities=14% Similarity=0.076 Sum_probs=55.6
Q ss_pred CCCcccccCCCCChhHHHHHHc---CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhc-
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK- 428 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a---Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~- 428 (488)
++-+|||+-||.|+.++.+-++ +. .++++|+++...+..+.++...+... ..++.+|..++ ++.+...
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~----l~~l~~~~ 142 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDG---KITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLA----LDNLLQGQ 142 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH----HHHHHHST
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHhcc
Confidence 3468999999999999888765 43 47899999999999988886543221 12345665432 1222111
Q ss_pred --cCCccEEEecCCCCC
Q 011347 429 --LGSIDFVICQNSVPQ 443 (488)
Q Consensus 429 --~g~~DLVIGGpPCQ~ 443 (488)
.+.||+|+-..+|..
T Consensus 143 ~~~~~fD~I~~d~~~~~ 159 (237)
T 3c3y_A 143 ESEGSYDFGFVDADKPN 159 (237)
T ss_dssp TCTTCEEEEEECSCGGG
T ss_pred CCCCCcCEEEECCchHH
Confidence 257999997766543
No 264
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=91.32 E-value=0.34 Score=42.94 Aligned_cols=55 Identities=9% Similarity=-0.055 Sum_probs=37.0
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALT 418 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~ 418 (488)
+.+.+||||-||.|+++..+.+. +-.-..|+++|+++.+. ..+..++.+|+.+..
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~-----------~~~v~~~~~d~~~~~ 76 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDP-----------IPNVYFIQGEIGKDN 76 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCC-----------CTTCEEEECCTTTTS
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCC-----------CCCceEEEccccchh
Confidence 45678999999999999888754 21012478999998521 123335567887654
No 265
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=91.09 E-value=0.3 Score=47.05 Aligned_cols=81 Identities=12% Similarity=0.010 Sum_probs=55.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 433 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D 433 (488)
.+-+|||+=||.|.++. +.+.+ + .-|+++|+|+.....++..... .....++.+|+.+++-.++. ...+..|
T Consensus 21 ~~~~VLEIG~G~G~lt~-l~~~~-~-~~v~avEid~~~~~~a~~~~~~--~~~v~~i~~D~~~~~~~~~~---~~~~~~~ 92 (252)
T 1qyr_A 21 KGQAMVEIGPGLAALTE-PVGER-L-DQLTVIELDRDLAARLQTHPFL--GPKLTIYQQDAMTFNFGELA---EKMGQPL 92 (252)
T ss_dssp TTCCEEEECCTTTTTHH-HHHTT-C-SCEEEECCCHHHHHHHHTCTTT--GGGEEEECSCGGGCCHHHHH---HHHTSCE
T ss_pred CcCEEEEECCCCcHHHH-hhhCC-C-CeEEEEECCHHHHHHHHHHhcc--CCceEEEECchhhCCHHHhh---cccCCce
Confidence 45689999999999999 87632 2 1168999999998888753321 11233677999888754331 0013468
Q ss_pred EEEecCCCC
Q 011347 434 FVICQNSVP 442 (488)
Q Consensus 434 LVIGGpPCQ 442 (488)
+|+|..|=.
T Consensus 93 ~vvsNlPY~ 101 (252)
T 1qyr_A 93 RVFGNLPYN 101 (252)
T ss_dssp EEEEECCTT
T ss_pred EEEECCCCC
Confidence 999999854
No 266
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=91.06 E-value=0.52 Score=40.62 Aligned_cols=69 Identities=14% Similarity=0.101 Sum_probs=48.4
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
..+.+|||+-||.|.+...+.+.+. .+.++|+++...+..+.. .....+..+| ..+ ..+.+
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d-~~~----------~~~~~ 76 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFAT---KLYCIDINVIALKEVKEK-----FDSVITLSDP-KEI----------PDNSV 76 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTEE---EEEEECSCHHHHHHHHHH-----CTTSEEESSG-GGS----------CTTCE
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcC---eEEEEeCCHHHHHHHHHh-----CCCcEEEeCC-CCC----------CCCce
Confidence 3567899999999999999998873 578999999988777653 1122234455 111 12579
Q ss_pred cEEEecCC
Q 011347 433 DFVICQNS 440 (488)
Q Consensus 433 DLVIGGpP 440 (488)
|+|+....
T Consensus 77 D~v~~~~~ 84 (170)
T 3i9f_A 77 DFILFANS 84 (170)
T ss_dssp EEEEEESC
T ss_pred EEEEEccc
Confidence 99986543
No 267
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=90.79 E-value=0.26 Score=46.71 Aligned_cols=83 Identities=10% Similarity=0.099 Sum_probs=55.5
Q ss_pred CCCcccccCCCCChhHHHHHHc---CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhc-
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK- 428 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a---Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~- 428 (488)
.+-+|||+-||.|..++.|.++ |. .++++|+++...+..+.++...+... ..++.+|..++ +..+...
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~----l~~l~~~~ 151 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDG---KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV----LDEMIKDE 151 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTC---EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH----HHHHHHSG
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHH----HHHHHhcc
Confidence 3468999999999999888775 43 37899999999988888876543211 12344565432 1222111
Q ss_pred --cCCccEEEecCCCCC
Q 011347 429 --LGSIDFVICQNSVPQ 443 (488)
Q Consensus 429 --~g~~DLVIGGpPCQ~ 443 (488)
.+.||+|+-..++..
T Consensus 152 ~~~~~fD~V~~d~~~~~ 168 (247)
T 1sui_A 152 KNHGSYDFIFVDADKDN 168 (247)
T ss_dssp GGTTCBSEEEECSCSTT
T ss_pred CCCCCEEEEEEcCchHH
Confidence 367999998776654
No 268
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=90.74 E-value=0.22 Score=36.72 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=26.5
Q ss_pred hhhhhHHhcCCCHHH-HHHHHHHhCCCCchhhhhhhhhh
Q 011347 2 EITLQLLEMGFSENQ-VSLAIEKFGSKTPISELADKIFS 39 (488)
Q Consensus 2 ~k~~~l~~mgf~~~e-~~~ai~~~g~~~~~~~l~d~i~a 39 (488)
+++..|.+|||++++ +..|+..++-+ ++.-+|.++.
T Consensus 9 ~~i~~L~~MGF~d~~~~~~AL~~~~gn--v~~Ave~L~~ 45 (46)
T 2bwb_A 9 HQLRQLNDMGFFDFDRNVAALRRSGGS--VQGALDSLLN 45 (46)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHTTC--HHHHHHHHHC
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHc
Confidence 467899999998655 68999999865 4444666553
No 269
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=90.68 E-value=0.19 Score=47.47 Aligned_cols=44 Identities=20% Similarity=0.273 Sum_probs=36.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHh
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 399 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~ 399 (488)
.+.+||||=||.|.+...+...|+ ..|+++|+++.+.+..+.|.
T Consensus 55 ~g~~vLDiGCG~G~~~~~~~~~~~--~~v~g~D~s~~~l~~a~~~~ 98 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWL 98 (263)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHH
T ss_pred CCceEEEeCCCccHHHHHHHHhhh--cceeeccccHHHHHHHHHHH
Confidence 567899999999888777777886 35889999999999888764
No 270
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=90.58 E-value=0.75 Score=45.10 Aligned_cols=47 Identities=9% Similarity=0.013 Sum_probs=36.6
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhh
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 401 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~ 401 (488)
+.+.+||||=||.|+....+...|. ..|+++|+++.+.+..+..+..
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~~~--~~v~GiD~S~~~l~~A~~~~~~ 93 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYGEI--ALLVATDPDADAIARGNERYNK 93 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEecCCcHhHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHh
Confidence 5678999999999997666666664 2478999999998888765543
No 271
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=90.47 E-value=0.21 Score=45.98 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=37.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhh
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 400 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~ 400 (488)
.+.+|||+-||.|.+...+.+.|. ..|+++|+++.+....+.+..
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~ 100 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLK 100 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHh
Confidence 457899999999999988888886 357899999999888877653
No 272
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=90.31 E-value=0.65 Score=43.06 Aligned_cols=81 Identities=15% Similarity=0.238 Sum_probs=52.7
Q ss_pred CCCcccccCCCCChhHHHHHHc---CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL 429 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a---Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~ 429 (488)
.+.+|||+-||.|..+..+.++ +. .++++|+++...+..+.++...+... ..+..+|+.+. +..+....
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----l~~l~~~~ 144 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDG---QIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALAT----LEQLTQGK 144 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH----HHHHHTSS
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHhcC
Confidence 3468999999999999888765 32 37899999999888888775443211 12344554321 22221111
Q ss_pred --CCccEEEecCCC
Q 011347 430 --GSIDFVICQNSV 441 (488)
Q Consensus 430 --g~~DLVIGGpPC 441 (488)
+.||+|+-..++
T Consensus 145 ~~~~fD~V~~d~~~ 158 (232)
T 3cbg_A 145 PLPEFDLIFIDADK 158 (232)
T ss_dssp SCCCEEEEEECSCG
T ss_pred CCCCcCEEEECCCH
Confidence 679999876554
No 273
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=90.27 E-value=0.44 Score=42.97 Aligned_cols=79 Identities=18% Similarity=0.170 Sum_probs=51.8
Q ss_pred CCCcccccCCCCChhHHHHHHc---CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhcc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL 429 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a---Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~ 429 (488)
.+.+|||+-||.|..+..+.++ |. .|+++|+++...+..+.++...+... ..++.+|..++ +. ...
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~---~~~ 125 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISS---RVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGI----AA---GQR 125 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHH----HT---TCC
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHH----hc---cCC
Confidence 3468999999999999988765 43 47899999999988887765432211 11344554321 11 112
Q ss_pred CCccEEEecCCCCC
Q 011347 430 GSIDFVICQNSVPQ 443 (488)
Q Consensus 430 g~~DLVIGGpPCQ~ 443 (488)
+ ||+|+-..++..
T Consensus 126 ~-fD~v~~~~~~~~ 138 (210)
T 3c3p_A 126 D-IDILFMDCDVFN 138 (210)
T ss_dssp S-EEEEEEETTTSC
T ss_pred C-CCEEEEcCChhh
Confidence 4 999987765543
No 274
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=90.19 E-value=0.31 Score=48.47 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=53.2
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcC----CCCCcceeccccccChhhHHHhhhc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHK 428 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n----~~g~lv~~~DI~~L~~~~Ie~l~~~ 428 (488)
+++.+||+|-||.|++...+.+.. ....+.+||+|+...+..+.++...+ .....++.+|+.+. ++ ..
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~----l~---~~ 178 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF----LK---NH 178 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH----HH---HC
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHH----HH---hc
Confidence 455789999999999998887652 22457899999999998888764321 11122344555431 11 12
Q ss_pred cCCccEEEecCC
Q 011347 429 LGSIDFVICQNS 440 (488)
Q Consensus 429 ~g~~DLVIGGpP 440 (488)
.+.+|+|+..++
T Consensus 179 ~~~fD~Ii~d~~ 190 (314)
T 2b2c_A 179 KNEFDVIITDSS 190 (314)
T ss_dssp TTCEEEEEECCC
T ss_pred CCCceEEEEcCC
Confidence 357999997654
No 275
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=90.19 E-value=0.28 Score=37.42 Aligned_cols=38 Identities=21% Similarity=0.248 Sum_probs=30.1
Q ss_pred hhhhhHHhcCCCHHHH-HHHHHHhCCCCchhhhhhhhhhcc
Q 011347 2 EITLQLLEMGFSENQV-SLAIEKFGSKTPISELADKIFSGQ 41 (488)
Q Consensus 2 ~k~~~l~~mgf~~~e~-~~ai~~~g~~~~~~~l~d~i~a~~ 41 (488)
+++..|.+|||+++++ ..|+.+++-| |+.-++.+|...
T Consensus 11 ~~l~~L~~MGF~d~~~n~~AL~~~~Gd--v~~Ave~L~~~~ 49 (54)
T 2dah_A 11 VQLEQLRSMGFLNREANLQALIATGGD--VDAAVEKLRQSS 49 (54)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 4678999999988875 8999999865 566688888653
No 276
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=90.09 E-value=0.22 Score=44.99 Aligned_cols=64 Identities=14% Similarity=0.097 Sum_probs=40.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHh----hhcCCCCCcceeccccccC
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW----ESSGQTGELVQIEDIQALT 418 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~----~~~n~~g~lv~~~DI~~L~ 418 (488)
.+.+|||+-||.|.+...|.+.+= -.-|+++|+++.....+..+- .........++.+|+.++.
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~ 94 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQNP-SRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLP 94 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHCT-TEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCC
T ss_pred CCCEEEEecCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCC
Confidence 567899999999999999988731 134789999998554322111 1111222335567776654
No 277
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=89.88 E-value=0.14 Score=51.02 Aligned_cols=90 Identities=17% Similarity=0.097 Sum_probs=56.5
Q ss_pred chhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChh
Q 011347 341 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK 420 (488)
Q Consensus 341 i~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~ 420 (488)
+...|++++.+ ++-.+||||+|.|.+.+-+-+ |. +-++.||.++.+.++++.+.... ....++..|...
T Consensus 80 l~~yf~~l~~~--n~~~~LDlfaGSGaLgiEaLS-~~--d~~vfvE~~~~a~~~L~~Nl~~~--~~~~V~~~D~~~---- 148 (283)
T 2oo3_A 80 FLEYISVIKQI--NLNSTLSYYPGSPYFAINQLR-SQ--DRLYLCELHPTEYNFLLKLPHFN--KKVYVNHTDGVS---- 148 (283)
T ss_dssp GHHHHHHHHHH--SSSSSCCEEECHHHHHHHHSC-TT--SEEEEECCSHHHHHHHTTSCCTT--SCEEEECSCHHH----
T ss_pred HHHHHHHHHHh--cCCCceeEeCCcHHHHHHHcC-CC--CeEEEEeCCHHHHHHHHHHhCcC--CcEEEEeCcHHH----
Confidence 45567777763 456799999999997665555 33 45788999999999998654321 112233334321
Q ss_pred hHHHhhhccCCccEEEecCCC
Q 011347 421 KFESLIHKLGSIDFVICQNSV 441 (488)
Q Consensus 421 ~Ie~l~~~~g~~DLVIGGpPC 441 (488)
-+..+......+|||.-=||=
T Consensus 149 ~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 149 KLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp HHHHHCSCTTSCEEEEECCCC
T ss_pred HHHHhcCCCCCccEEEECCCC
Confidence 122222222369999998884
No 278
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=89.87 E-value=0.62 Score=49.17 Aligned_cols=81 Identities=10% Similarity=0.127 Sum_probs=53.7
Q ss_pred CCCCcccccCCCCChhHHHHH-HcCCeeeeEEEeeCCHHHHHHHHHHh-------hhcC--CCCCcceeccccccChhhH
Q 011347 353 PGGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWW-------ESSG--QTGELVQIEDIQALTTKKF 422 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~-~aGi~~k~vvsVEid~~a~~t~~~~~-------~~~n--~~g~lv~~~DI~~L~~~~I 422 (488)
..+-+||||=||.|.+.+.+. ..|. .-+++||+++.+....+.+. ...+ .....++.+|+.++.-.+
T Consensus 172 ~~gd~VLDLGCGtG~l~l~lA~~~g~--~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d- 248 (438)
T 3uwp_A 172 TDDDLFVDLGSGVGQVVLQVAAATNC--KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRE- 248 (438)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHCCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHH-
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCcccc-
Confidence 356789999999999998775 4564 34789999987766555421 1111 122336679998764321
Q ss_pred HHhhhccCCccEEEecCCC
Q 011347 423 ESLIHKLGSIDFVICQNSV 441 (488)
Q Consensus 423 e~l~~~~g~~DLVIGGpPC 441 (488)
.++.+|+|+..++|
T Consensus 249 -----~~~~aDVVf~Nn~~ 262 (438)
T 3uwp_A 249 -----RIANTSVIFVNNFA 262 (438)
T ss_dssp -----HHHTCSEEEECCTT
T ss_pred -----ccCCccEEEEcccc
Confidence 12469999987776
No 279
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=89.86 E-value=0.25 Score=49.57 Aligned_cols=81 Identities=21% Similarity=0.235 Sum_probs=53.1
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhc----CCCCCcceeccccccChhhHHHhhhc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK 428 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~----n~~g~lv~~~DI~~L~~~~Ie~l~~~ 428 (488)
+.+.+||||-||.|++...+.+.. ...-|.+||+|+...+..+.+.... +.....++.+|+.+. ++.+ .
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~----l~~~--~ 191 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF----LKNA--A 191 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH----HHTS--C
T ss_pred CCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHH----HHhc--c
Confidence 455789999999999999887762 2235789999999998888765431 111223455666432 1110 1
Q ss_pred cCCccEEEecCC
Q 011347 429 LGSIDFVICQNS 440 (488)
Q Consensus 429 ~g~~DLVIGGpP 440 (488)
.+.||+|+.-++
T Consensus 192 ~~~fDlIi~d~~ 203 (334)
T 1xj5_A 192 EGSYDAVIVDSS 203 (334)
T ss_dssp TTCEEEEEECCC
T ss_pred CCCccEEEECCC
Confidence 257999997543
No 280
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=89.48 E-value=0.31 Score=44.24 Aligned_cols=70 Identities=26% Similarity=0.310 Sum_probs=47.3
Q ss_pred cccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhh
Q 011347 347 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI 426 (488)
Q Consensus 347 vLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~ 426 (488)
.+....| +.+|||+-||.|.+...+... +++|+++...+..+.. +..+...|+.++..
T Consensus 41 ~l~~~~~-~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~~------- 98 (219)
T 1vlm_A 41 AVKCLLP-EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR-------GVFVLKGTAENLPL------- 98 (219)
T ss_dssp HHHHHCC-SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT-------TCEEEECBTTBCCS-------
T ss_pred HHHHhCC-CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc-------CCEEEEcccccCCC-------
Confidence 3444445 779999999999998877554 6899999987776542 22345667765531
Q ss_pred hccCCccEEEecC
Q 011347 427 HKLGSIDFVICQN 439 (488)
Q Consensus 427 ~~~g~~DLVIGGp 439 (488)
..+.+|+|+...
T Consensus 99 -~~~~fD~v~~~~ 110 (219)
T 1vlm_A 99 -KDESFDFALMVT 110 (219)
T ss_dssp -CTTCEEEEEEES
T ss_pred -CCCCeeEEEEcc
Confidence 114688887653
No 281
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=89.44 E-value=0.26 Score=46.19 Aligned_cols=72 Identities=24% Similarity=0.207 Sum_probs=49.9
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
+.+.+|||+=||.|.+...|.+.|.+ |+++|+++......+. .....++.+|+.++.. ..+.|
T Consensus 33 ~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~------~~~~~~~~~d~~~~~~--------~~~~f 95 (261)
T 3ege_A 33 PKGSVIADIGAGTGGYSVALANQGLF---VYAVEPSIVMRQQAVV------HPQVEWFTGYAENLAL--------PDKSV 95 (261)
T ss_dssp CTTCEEEEETCTTSHHHHHHHTTTCE---EEEECSCHHHHHSSCC------CTTEEEECCCTTSCCS--------CTTCB
T ss_pred CCCCEEEEEcCcccHHHHHHHhCCCE---EEEEeCCHHHHHHHHh------ccCCEEEECchhhCCC--------CCCCE
Confidence 45689999999999999999988864 6899999975433221 1123355677766542 11579
Q ss_pred cEEEecCCC
Q 011347 433 DFVICQNSV 441 (488)
Q Consensus 433 DLVIGGpPC 441 (488)
|+|+.....
T Consensus 96 D~v~~~~~l 104 (261)
T 3ege_A 96 DGVISILAI 104 (261)
T ss_dssp SEEEEESCG
T ss_pred eEEEEcchH
Confidence 999876543
No 282
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=89.41 E-value=0.31 Score=40.28 Aligned_cols=39 Identities=28% Similarity=0.329 Sum_probs=32.4
Q ss_pred hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347 2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 41 (488)
Q Consensus 2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~ 41 (488)
+++.+|++|||+++.|..|+-..|.. .++.-++.+|...
T Consensus 31 ~~v~~L~~MGF~~~~a~~AL~~t~n~-n~e~A~ewL~~h~ 69 (84)
T 1vek_A 31 EIVAQLVSMGFSQLHCQKAAINTSNA-GVEEAMNWLLSHM 69 (84)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTTC-CHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHcCC-CHHHHHHHHHhCC
Confidence 35679999999999999999988743 5777789998865
No 283
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=89.36 E-value=0.3 Score=42.28 Aligned_cols=38 Identities=16% Similarity=0.418 Sum_probs=32.3
Q ss_pred hhhhhHHhc-CCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347 2 EITLQLLEM-GFSENQVSLAIEKFGSKTPISELADKIFSGQ 41 (488)
Q Consensus 2 ~k~~~l~~m-gf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~ 41 (488)
+++..|++| ||+++||..|+..|+-| +.+-++.++.+.
T Consensus 41 ekVk~L~EmtG~seeeAr~AL~~~ngD--l~~AI~~Lleg~ 79 (104)
T 1wj7_A 41 EKVKQLIDITGKNQDECVIALHDCNGD--VNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHTCS
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 578899999 99999999999999987 556677887665
No 284
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=89.34 E-value=0.8 Score=45.82 Aligned_cols=72 Identities=17% Similarity=0.152 Sum_probs=49.5
Q ss_pred CCCCcccccCCCCChhH-HHHHH-cCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccC
Q 011347 353 PGGLTMLSVFSGIGGAE-VTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 430 (488)
Q Consensus 353 p~~itVLDLFSGiGGls-lGL~~-aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g 430 (488)
+.+.+|||+=||.||++ +-+.+ .|.+ |+++|+++...+.-+.+....+.....++.+|..++. .+
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~---V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~----------d~ 187 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSHVYGMR---VNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID----------GL 187 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHHTTCCE---EEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG----------GC
T ss_pred CCcCEEEEECCCccHHHHHHHHHccCCE---EEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC----------CC
Confidence 46789999999999876 33333 4653 7899999998888777654433322335667877653 15
Q ss_pred CccEEEe
Q 011347 431 SIDFVIC 437 (488)
Q Consensus 431 ~~DLVIG 437 (488)
.||+|+-
T Consensus 188 ~FDvV~~ 194 (298)
T 3fpf_A 188 EFDVLMV 194 (298)
T ss_dssp CCSEEEE
T ss_pred CcCEEEE
Confidence 7999973
No 285
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=89.26 E-value=0.34 Score=46.19 Aligned_cols=49 Identities=8% Similarity=-0.048 Sum_probs=40.5
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS 402 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~ 402 (488)
+..-+||||=||.|.+++.+..+.=.. .++++|+|+.+.++.+.+....
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~ 96 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKL 96 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHS
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhc
Confidence 557899999999999999998774333 5899999999999999876543
No 286
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=89.11 E-value=0.3 Score=49.20 Aligned_cols=77 Identities=14% Similarity=0.216 Sum_probs=51.7
Q ss_pred CCCcccccCCCCChhHHHHHH--cCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347 354 GGLTMLSVFSGIGGAEVTLHR--LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~--aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
+.++||+|=||.|++...+.+ -+.+ +.+||||+...+..+.|+.........++.+|..+.- ..+ .-+.
T Consensus 89 ~~~rVLdIG~G~G~la~~la~~~p~~~---v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l----~~~--~~~~ 159 (317)
T 3gjy_A 89 SKLRITHLGGGACTMARYFADVYPQSR---NTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVA----ESF--TPAS 159 (317)
T ss_dssp GGCEEEEESCGGGHHHHHHHHHSTTCE---EEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHH----HTC--CTTC
T ss_pred CCCEEEEEECCcCHHHHHHHHHCCCcE---EEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHH----hhc--cCCC
Confidence 346999999999999988877 2543 5789999999998888764221222335567765431 110 1257
Q ss_pred ccEEEecC
Q 011347 432 IDFVICQN 439 (488)
Q Consensus 432 ~DLVIGGp 439 (488)
||+|+...
T Consensus 160 fDvIi~D~ 167 (317)
T 3gjy_A 160 RDVIIRDV 167 (317)
T ss_dssp EEEEEECC
T ss_pred CCEEEECC
Confidence 99999754
No 287
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=88.98 E-value=0.24 Score=37.92 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=25.1
Q ss_pred hhhhhHHhcCCCHHHHHHHHHHhCCCCch
Q 011347 2 EITLQLLEMGFSENQVSLAIEKFGSKTPI 30 (488)
Q Consensus 2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~ 30 (488)
+++.+|+.|||+.++|-.|+.....+..+
T Consensus 13 ~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~ 41 (52)
T 2ooa_A 13 AKIAKLMGEGYAFEEVKRALEIAQNNVEV 41 (52)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCHHH
Confidence 46789999999999999999999887543
No 288
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=88.76 E-value=0.21 Score=47.15 Aligned_cols=83 Identities=13% Similarity=0.172 Sum_probs=53.7
Q ss_pred CCCcccccCCCCChhHHHHHHc---CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhc-
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK- 428 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a---Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~- 428 (488)
.+-+|||+-||.|..++.|-++ |. .|+++|+++...+..+.++...+... ..++.+|..++- ..+...
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l----~~~~~~~ 132 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDG---QVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTL----HSLLNEG 132 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTC---EEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHH----HHHHHHH
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH----HHHhhcc
Confidence 3468999999999999988774 32 37899999987766666665443321 224556665432 211111
Q ss_pred -cCCccEEEecCCCCC
Q 011347 429 -LGSIDFVICQNSVPQ 443 (488)
Q Consensus 429 -~g~~DLVIGGpPCQ~ 443 (488)
.+.||+|+-..++..
T Consensus 133 ~~~~fD~V~~d~~~~~ 148 (242)
T 3r3h_A 133 GEHQFDFIFIDADKTN 148 (242)
T ss_dssp CSSCEEEEEEESCGGG
T ss_pred CCCCEeEEEEcCChHH
Confidence 368999987766443
No 289
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=88.41 E-value=0.36 Score=42.05 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=33.6
Q ss_pred hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347 2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 41 (488)
Q Consensus 2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~ 41 (488)
++...|++|||+++.+..|+-.||.. .+++-++.|+.-+
T Consensus 5 ~~l~~L~~MGF~~~~a~~AL~~t~n~-~~e~A~~wL~~~~ 43 (126)
T 2lbc_A 5 SSVMQLAEMGFPLEACRKAVYFTGNM-GAEVAFNWIIVHM 43 (126)
T ss_dssp HHHHHHHTTSSCCHHHHHHHHHHTSC-CHHHHHHHHHHGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCC-CHHHHHHHHHHhc
Confidence 35678999999999999999999873 6888889998766
No 290
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=88.11 E-value=0.32 Score=46.95 Aligned_cols=73 Identities=8% Similarity=-0.030 Sum_probs=48.1
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhc----CCCCCcceeccccccChhhHHHhhhc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK 428 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~----n~~g~lv~~~DI~~L~~~~Ie~l~~~ 428 (488)
+++.+||++-||.|++...+.+.| .-+.+||+|+...+..+.++... ..+...++.+|..+.-
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---------- 137 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---------- 137 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----------
T ss_pred CCCCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----------
Confidence 456789999999999998777665 35789999999877666544210 0111223445554321
Q ss_pred cCCccEEEecC
Q 011347 429 LGSIDFVICQN 439 (488)
Q Consensus 429 ~g~~DLVIGGp 439 (488)
+.+|+|+...
T Consensus 138 -~~fD~Ii~d~ 147 (262)
T 2cmg_A 138 -KKYDLIFCLQ 147 (262)
T ss_dssp -CCEEEEEESS
T ss_pred -hhCCEEEECC
Confidence 4689998764
No 291
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=87.84 E-value=1.4 Score=42.27 Aligned_cols=82 Identities=12% Similarity=0.088 Sum_probs=53.1
Q ss_pred CCCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccC
Q 011347 352 FPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 430 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g 430 (488)
...|.+||||-||.|.+..-+.+. |=.- .|+++|+++...+.++..-.. .++...+..|..+..... ...+
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G-~V~avD~s~~~~~~l~~~a~~--~~ni~~V~~d~~~p~~~~-----~~~~ 146 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRG-RIYGVEFAPRVMRDLLTVVRD--RRNIFPILGDARFPEKYR-----HLVE 146 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTC-EEEEEECCHHHHHHHHHHSTT--CTTEEEEESCTTCGGGGT-----TTCC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhhHh--hcCeeEEEEeccCccccc-----cccc
Confidence 356899999999999999888753 5332 478999999988777653221 223334556666543211 1235
Q ss_pred CccEEEecCCC
Q 011347 431 SIDFVICQNSV 441 (488)
Q Consensus 431 ~~DLVIGGpPC 441 (488)
.+|+|+.-.+.
T Consensus 147 ~vDvVf~d~~~ 157 (233)
T 4df3_A 147 GVDGLYADVAQ 157 (233)
T ss_dssp CEEEEEECCCC
T ss_pred eEEEEEEeccC
Confidence 79998855443
No 292
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=87.76 E-value=0.43 Score=36.97 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=27.6
Q ss_pred hhhhhHHhcCCCHH-HHHHHHHHhCCCCchhhhhhhhhhc
Q 011347 2 EITLQLLEMGFSEN-QVSLAIEKFGSKTPISELADKIFSG 40 (488)
Q Consensus 2 ~k~~~l~~mgf~~~-e~~~ai~~~g~~~~~~~l~d~i~a~ 40 (488)
+++..|.+|||+++ .+..|+..++-| ++.-+|.++..
T Consensus 19 ~qi~~L~~MGF~d~~~~~~AL~~~~gn--ve~Ave~L~~~ 56 (58)
T 1wr1_B 19 HQLRQLNDMGFFDFDRNVAALRRSGGS--VQGALDSLLNG 56 (58)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHhC
Confidence 36789999999755 558999999865 55557777653
No 293
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=87.72 E-value=0.66 Score=53.01 Aligned_cols=65 Identities=12% Similarity=0.100 Sum_probs=44.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhc------CCCCCcceeccccccC
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS------GQTGELVQIEDIQALT 418 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~------n~~g~lv~~~DI~~L~ 418 (488)
.+.+||||-||.|.+...|.+.|-+..-|+++|+++.+.+..+...... +.....++.+|+.++.
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp 791 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFD 791 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCC
Confidence 5679999999999999999988722234789999999887776532211 1112234567776654
No 294
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=87.51 E-value=0.59 Score=43.63 Aligned_cols=76 Identities=16% Similarity=0.123 Sum_probs=50.4
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
+.+.+|||+=||.|.....+.+.+. .-+++||+++...+..+.+....+ ....++.+|...+... + .-+.|
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~-~~~~~~~~~a~~~~~~-~-----~~~~F 129 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPT-L-----PDGHF 129 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGG-S-----CTTCE
T ss_pred cCCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCC-CceEEEeehHHhhccc-c-----cccCC
Confidence 5788999999999999888877653 457899999998888776543322 1222344555433211 0 12568
Q ss_pred cEEEe
Q 011347 433 DFVIC 437 (488)
Q Consensus 433 DLVIG 437 (488)
|.|+.
T Consensus 130 D~i~~ 134 (236)
T 3orh_A 130 DGILY 134 (236)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 98864
No 295
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=87.18 E-value=0.58 Score=46.96 Aligned_cols=80 Identities=21% Similarity=0.264 Sum_probs=52.1
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhc--------CCCCCcceeccccccChh---h
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS--------GQTGELVQIEDIQALTTK---K 421 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~--------n~~g~lv~~~DI~~L~~~---~ 421 (488)
.+.+||||-||.|.+...|.+. |-. ..|+++|+++.+....+.+.... ......++.+|+.++... .
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEH-GKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTT-CEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 5679999999999998888664 211 14789999999888776543211 012333566888776321 1
Q ss_pred HHHhhhccCCccEEEecC
Q 011347 422 FESLIHKLGSIDFVICQN 439 (488)
Q Consensus 422 Ie~l~~~~g~~DLVIGGp 439 (488)
+ .-+.||+|+...
T Consensus 162 ~-----~~~~fD~V~~~~ 174 (383)
T 4fsd_A 162 V-----PDSSVDIVISNC 174 (383)
T ss_dssp C-----CTTCEEEEEEES
T ss_pred C-----CCCCEEEEEEcc
Confidence 1 125799999754
No 296
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=87.15 E-value=0.62 Score=49.65 Aligned_cols=84 Identities=13% Similarity=0.125 Sum_probs=48.9
Q ss_pred CCCcccccCCCCChhHHHHHH-c---CC--------eeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhh
Q 011347 354 GGLTMLSVFSGIGGAEVTLHR-L---GI--------KLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKK 421 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~-a---Gi--------~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~ 421 (488)
.+-+|+|-.||.|||-++..+ + +- .-..++++|+++.+.++.+.+..-++.....+..+|--.....+
T Consensus 217 ~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~~ 296 (530)
T 3ufb_A 217 LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLRE 296 (530)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGGG
T ss_pred CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchhh
Confidence 346899999999999776532 1 10 01247899999998887765433222222223444432111110
Q ss_pred HHHhhhccCCccEEEecCCC
Q 011347 422 FESLIHKLGSIDFVICQNSV 441 (488)
Q Consensus 422 Ie~l~~~~g~~DLVIGGpPC 441 (488)
......||+|+|=||=
T Consensus 297 ----~~~~~~fD~Il~NPPf 312 (530)
T 3ufb_A 297 ----MGDKDRVDVILTNPPF 312 (530)
T ss_dssp ----CCGGGCBSEEEECCCS
T ss_pred ----hcccccceEEEecCCC
Confidence 0112479999999984
No 297
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=87.09 E-value=0.48 Score=41.30 Aligned_cols=37 Identities=30% Similarity=0.390 Sum_probs=30.7
Q ss_pred hhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347 3 ITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 41 (488)
Q Consensus 3 k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~ 41 (488)
++.+|++|||+++++..|+..+|.+ ++.-++.++...
T Consensus 81 ~v~~L~~MGF~~~~a~~AL~~~~~~--~e~A~e~L~~~~ 117 (126)
T 2lbc_A 81 IVAIITSMGFQRNQAIQALRATNNN--LERALDWIFSHP 117 (126)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHTSC--HHHHHHHHHTCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 4678999999999999999999864 666778887543
No 298
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=87.09 E-value=1 Score=43.12 Aligned_cols=80 Identities=13% Similarity=0.092 Sum_probs=47.4
Q ss_pred CCCCcccccCCCCChhHHHHHH-cCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~-aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
..+.+||||-||.|+++.-+.. .|=. -.|+++|+++...+.+...-.. .++..++.+|+++.... .. ..+.
T Consensus 75 ~~g~~VLDlG~GtG~~t~~la~~v~~~-G~V~avD~s~~~l~~l~~~a~~--r~nv~~i~~Da~~~~~~--~~---~~~~ 146 (232)
T 3id6_C 75 RKGTKVLYLGAASGTTISHVSDIIELN-GKAYGVEFSPRVVRELLLVAQR--RPNIFPLLADARFPQSY--KS---VVEN 146 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHTTT-SEEEEEECCHHHHHHHHHHHHH--CTTEEEEECCTTCGGGT--TT---TCCC
T ss_pred CCCCEEEEEeecCCHHHHHHHHHhCCC-CEEEEEECcHHHHHHHHHHhhh--cCCeEEEEcccccchhh--hc---cccc
Confidence 4578999999999998877754 3322 1478999999764323211111 12333566888754321 00 1257
Q ss_pred ccEEEecCC
Q 011347 432 IDFVICQNS 440 (488)
Q Consensus 432 ~DLVIGGpP 440 (488)
||+|+-..+
T Consensus 147 ~D~I~~d~a 155 (232)
T 3id6_C 147 VDVLYVDIA 155 (232)
T ss_dssp EEEEEECCC
T ss_pred eEEEEecCC
Confidence 898875543
No 299
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=85.09 E-value=0.48 Score=36.42 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=24.1
Q ss_pred hhhhhHHhcCCCHHHHHHHHHHhCCCC
Q 011347 2 EITLQLLEMGFSENQVSLAIEKFGSKT 28 (488)
Q Consensus 2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~ 28 (488)
+++.+|+.|||+.++|-.|+..+..+.
T Consensus 11 ~~I~~L~~lGF~r~~ai~AL~~a~nnv 37 (53)
T 2d9s_A 11 SEIERLMSQGYSYQDIQKALVIAHNNI 37 (53)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcCCH
Confidence 357899999999999999999998874
No 300
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=85.09 E-value=0.91 Score=40.72 Aligned_cols=74 Identities=12% Similarity=0.112 Sum_probs=46.1
Q ss_pred cccCcchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceecccc
Q 011347 336 FQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQ 415 (488)
Q Consensus 336 fqvdti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~ 415 (488)
|....+...+..|... +.+.+|||+-||.|.+...+ +. .++++|+++.. ..+..+|+.
T Consensus 50 ~~~~~~~~~~~~l~~~-~~~~~vLDiG~G~G~~~~~l---~~---~v~~~D~s~~~---------------~~~~~~d~~ 107 (215)
T 2zfu_A 50 WPLQPVDRIARDLRQR-PASLVVADFGCGDCRLASSI---RN---PVHCFDLASLD---------------PRVTVCDMA 107 (215)
T ss_dssp SSSCHHHHHHHHHHTS-CTTSCEEEETCTTCHHHHHC---CS---CEEEEESSCSS---------------TTEEESCTT
T ss_pred cchhHHHHHHHHHhcc-CCCCeEEEECCcCCHHHHHh---hc---cEEEEeCCCCC---------------ceEEEeccc
Confidence 3333333344444432 45678999999999987766 33 36789998861 124567777
Q ss_pred ccChhhHHHhhhccCCccEEEecC
Q 011347 416 ALTTKKFESLIHKLGSIDFVICQN 439 (488)
Q Consensus 416 ~L~~~~Ie~l~~~~g~~DLVIGGp 439 (488)
++.. ..+.||+|+...
T Consensus 108 ~~~~--------~~~~fD~v~~~~ 123 (215)
T 2zfu_A 108 QVPL--------EDESVDVAVFCL 123 (215)
T ss_dssp SCSC--------CTTCEEEEEEES
T ss_pred cCCC--------CCCCEeEEEEeh
Confidence 6531 124699999644
No 301
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=84.59 E-value=1.6 Score=41.92 Aligned_cols=79 Identities=10% Similarity=0.067 Sum_probs=50.6
Q ss_pred CCCCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhcc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL 429 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~ 429 (488)
..+.+|||+-||.|.+...+.+. +. -++++|++ ...+..+......+..+ ..+..+|+.+... .
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~ 230 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNA---EIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDY---------G 230 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTC---EEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCC---------C
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCC---eEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCC---------C
Confidence 56789999999999999988876 54 36789999 66666655443222111 2245566654321 1
Q ss_pred CCccEEEecCCCCCc
Q 011347 430 GSIDFVICQNSVPQI 444 (488)
Q Consensus 430 g~~DLVIGGpPCQ~F 444 (488)
+++|+|+....-..+
T Consensus 231 ~~~D~v~~~~~l~~~ 245 (335)
T 2r3s_A 231 NDYDLVLLPNFLHHF 245 (335)
T ss_dssp SCEEEEEEESCGGGS
T ss_pred CCCcEEEEcchhccC
Confidence 248888876655444
No 302
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=84.46 E-value=2.6 Score=44.03 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=33.1
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHH
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRIL 395 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~ 395 (488)
..+.+||||-||.|.+.+.+.+. |. ..|++||+++.+....
T Consensus 241 ~~g~~VLDLGCGsG~la~~LA~~~g~--~~V~GVDis~~~l~~A 282 (433)
T 1u2z_A 241 KKGDTFMDLGSGVGNCVVQAALECGC--ALSFGCEIMDDASDLT 282 (433)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCC--SEEEEEECCHHHHHHH
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHCCC--CEEEEEeCCHHHHHHH
Confidence 35678999999999999888774 53 2478999999986655
No 303
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=84.12 E-value=1.8 Score=39.86 Aligned_cols=78 Identities=12% Similarity=0.046 Sum_probs=46.3
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
+.+.+||||=||.|..+.-|.+.+=. ..|+++|+++.+.+.+...-... .+...+.+|+.+... . ....+.|
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~-~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~~~--~---~~~~~~f 127 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDE-GIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWK--Y---SGIVEKV 127 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTT-SEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGG--T---TTTCCCE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCchh--h---cccccce
Confidence 45679999999999998877654202 24789999997644332211111 122234567765321 0 0012579
Q ss_pred cEEEec
Q 011347 433 DFVICQ 438 (488)
Q Consensus 433 DLVIGG 438 (488)
|+|+..
T Consensus 128 D~V~~~ 133 (210)
T 1nt2_A 128 DLIYQD 133 (210)
T ss_dssp EEEEEC
T ss_pred eEEEEe
Confidence 999865
No 304
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=83.76 E-value=1.3 Score=41.24 Aligned_cols=83 Identities=14% Similarity=0.023 Sum_probs=48.2
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHH------HHHHHHHHhhhcCC-CCCcceecc-ccccChhhHH
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSET------NRRILKRWWESSGQ-TGELVQIED-IQALTTKKFE 423 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~------a~~t~~~~~~~~n~-~g~lv~~~D-I~~L~~~~Ie 423 (488)
+.+.+|||+-||.|.+...+.+. |-.. .|+++|+++. .....+......+. ....+...| +... .+.
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~-~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~ 117 (275)
T 3bkx_A 42 KPGEKILEIGCGQGDLSAVLADQVGSSG-HVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDD---LGP 117 (275)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCTTC-EEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTC---CGG
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCC-EEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhc---cCC
Confidence 35679999999999999888776 4222 3788999985 44454444332211 112234455 2211 111
Q ss_pred HhhhccCCccEEEecCCCC
Q 011347 424 SLIHKLGSIDFVICQNSVP 442 (488)
Q Consensus 424 ~l~~~~g~~DLVIGGpPCQ 442 (488)
-..+.||+|+......
T Consensus 118 ---~~~~~fD~v~~~~~l~ 133 (275)
T 3bkx_A 118 ---IADQHFDRVVLAHSLW 133 (275)
T ss_dssp ---GTTCCCSEEEEESCGG
T ss_pred ---CCCCCEEEEEEccchh
Confidence 0125799998765443
No 305
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=83.48 E-value=0.47 Score=45.95 Aligned_cols=35 Identities=11% Similarity=0.011 Sum_probs=29.0
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHH
Q 011347 352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSET 390 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~ 390 (488)
++.+.+||||=||.||++..+.+.| .|++||+++.
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~~----~V~gvD~s~m 106 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASRP----HVMDVRAYTL 106 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTST----TEEEEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHcC----cEEEEECchh
Confidence 4567899999999999998887773 3789999884
No 306
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=83.36 E-value=1 Score=44.66 Aligned_cols=44 Identities=16% Similarity=0.106 Sum_probs=36.8
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHh
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 399 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~ 399 (488)
..+-.|||.|||.|...++..++|-+ .+++|+++....+.+..+
T Consensus 251 ~~~~~VlDpF~GsGtt~~aa~~~gr~---~ig~e~~~~~~~~~~~r~ 294 (323)
T 1boo_A 251 EPDDLVVDIFGGSNTTGLVAERESRK---WISFEMKPEYVAASAFRF 294 (323)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHGGG
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCCC---EEEEeCCHHHHHHHHHHH
Confidence 35567999999999999999999964 578999999888776533
No 307
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=83.24 E-value=1.3 Score=35.88 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=29.8
Q ss_pred hhhhhHHhcCCC-HHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347 2 EITLQLLEMGFS-ENQVSLAIEKFGSKTPISELADKIFSGQ 41 (488)
Q Consensus 2 ~k~~~l~~mgf~-~~e~~~ai~~~g~~~~~~~l~d~i~a~~ 41 (488)
+++..|++|||+ ++.+..|+..++-| ++.-+|.+|...
T Consensus 31 ~qi~qL~eMGF~dr~~~~~AL~~t~Gn--ve~Ave~L~~~~ 69 (74)
T 1vej_A 31 QELEELKALGFANRDANLQALVATDGD--IHAAIEMLLGAS 69 (74)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTSC--HHHHHHHHHTCC
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHhCC
Confidence 467899999996 56668999998865 666688888764
No 308
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=82.91 E-value=4.3 Score=39.72 Aligned_cols=81 Identities=16% Similarity=0.108 Sum_probs=51.4
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccC
Q 011347 352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG 430 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g 430 (488)
+..+.+|||+-||.|.+...+.+.+-.. .++++|+ +...+..+......+.. ...++.+|+.+- ++ .
T Consensus 180 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~------~ 247 (374)
T 1qzz_A 180 WSAVRHVLDVGGGNGGMLAAIALRAPHL-RGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP----LP------V 247 (374)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC----CS------C
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHCCCC-EEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCc----CC------C
Confidence 3456899999999999999988774222 3578999 88777776655433222 223455666431 11 2
Q ss_pred CccEEEecCCCCCc
Q 011347 431 SIDFVICQNSVPQI 444 (488)
Q Consensus 431 ~~DLVIGGpPCQ~F 444 (488)
++|+|+.......+
T Consensus 248 ~~D~v~~~~vl~~~ 261 (374)
T 1qzz_A 248 TADVVLLSFVLLNW 261 (374)
T ss_dssp CEEEEEEESCGGGS
T ss_pred CCCEEEEeccccCC
Confidence 48988876544333
No 309
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=82.72 E-value=0.75 Score=45.69 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=31.3
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHH
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNR 392 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~ 392 (488)
+.+.+|||+=||.|+++..|.+.|. .-|++||+++...
T Consensus 84 ~~g~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL 121 (291)
T 3hp7_A 84 VEDMITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQL 121 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCS
T ss_pred ccccEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHH
Confidence 3567899999999999998888885 3488999998643
No 310
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=82.21 E-value=1 Score=34.82 Aligned_cols=29 Identities=14% Similarity=0.183 Sum_probs=25.1
Q ss_pred hhhhhHHhcCCCHHHHHHHHHHhCCCCch
Q 011347 2 EITLQLLEMGFSENQVSLAIEKFGSKTPI 30 (488)
Q Consensus 2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~ 30 (488)
+++-.|++|||+.+.|..|+.-...|..+
T Consensus 9 ~~Ia~L~smGfsr~da~~AL~ia~Ndv~~ 37 (56)
T 2juj_A 9 SEIENLMSQGYSYQDIQKALVIAQNNIEM 37 (56)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHTTTCSHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcccHHH
Confidence 35678999999999999999999888654
No 311
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=81.67 E-value=0.35 Score=47.18 Aligned_cols=35 Identities=11% Similarity=-0.041 Sum_probs=29.0
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHH
Q 011347 352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSET 390 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~ 390 (488)
+..+.+||||=||.||++..+-+.| -|++||+++.
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~~----~V~gVD~s~m 114 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQP----NVREVKAYTL 114 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTST----TEEEEEEECC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHcC----CEEEEECchh
Confidence 4467899999999999998887774 3789999884
No 312
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=81.02 E-value=1.4 Score=38.60 Aligned_cols=36 Identities=11% Similarity=0.252 Sum_probs=28.6
Q ss_pred hhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhc
Q 011347 3 ITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSG 40 (488)
Q Consensus 3 k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~ 40 (488)
++-.|.+|||++++|..|+-+++.| ++--+|.+++.
T Consensus 79 ~v~~L~eMGF~~~~a~~AL~~~~nd--~erAlewL~~~ 114 (118)
T 4ae4_A 79 LMSKFKEMGFELKDIKEVLLLHNND--QDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTTC--HHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHHh
Confidence 3678999999999999999999986 44445666554
No 313
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=80.22 E-value=4.8 Score=39.25 Aligned_cols=78 Identities=15% Similarity=0.132 Sum_probs=49.3
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccCC
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
..+.+|||+-||.|.+...+.+.+-.+ .++++|+ +...+..+......+.. ...++.+|+.+- ++ .+
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~------~~ 249 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHV-SATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP----LP------RK 249 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC----CS------SC
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCC-EEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCC----CC------CC
Confidence 456799999999999999998876444 3567898 76666666554433221 222455666431 11 24
Q ss_pred ccEEEecCCCC
Q 011347 432 IDFVICQNSVP 442 (488)
Q Consensus 432 ~DLVIGGpPCQ 442 (488)
+|+|+......
T Consensus 250 ~D~v~~~~vl~ 260 (360)
T 1tw3_A 250 ADAIILSFVLL 260 (360)
T ss_dssp EEEEEEESCGG
T ss_pred ccEEEEccccc
Confidence 88888655443
No 314
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=80.08 E-value=4.3 Score=39.82 Aligned_cols=72 Identities=17% Similarity=0.084 Sum_probs=45.3
Q ss_pred hhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-Ccceecccccc
Q 011347 342 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQAL 417 (488)
Q Consensus 342 ~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L 417 (488)
...+..+. +..+.+|||+-||.|.+...+.+..=.. -++++|+ +...+..+......+..+ ..++.+|+.+.
T Consensus 180 ~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 252 (359)
T 1x19_A 180 QLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPEL-DSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE 252 (359)
T ss_dssp HHHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHCTTC-EEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS
T ss_pred HHHHHhcC--CCCCCEEEEECCcccHHHHHHHHHCCCC-eEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC
Confidence 34444432 4567899999999999999988763222 2578999 877777666554332222 22445666543
No 315
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=79.96 E-value=1.5 Score=35.11 Aligned_cols=37 Identities=22% Similarity=0.098 Sum_probs=30.6
Q ss_pred hhhhHHhcCCCHHHH-HHHHHHhCCCCchhhhhhhhhhcc
Q 011347 3 ITLQLLEMGFSENQV-SLAIEKFGSKTPISELADKIFSGQ 41 (488)
Q Consensus 3 k~~~l~~mgf~~~e~-~~ai~~~g~~~~~~~l~d~i~a~~ 41 (488)
++.+|.+|||++.++ ..|+..++- .|+--+|.++...
T Consensus 22 ql~qL~~MGF~d~~an~~AL~at~G--nve~Ave~L~~~~ 59 (67)
T 2dna_A 22 EMECLQAMGFVNYNANLQALIATDG--DTNAAIYKLKSSQ 59 (67)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTTS--CHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCcHHHHHHHHHHcCC--CHHHHHHHHHhCC
Confidence 568899999998877 799999985 4777788888765
No 316
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=79.95 E-value=1.7 Score=33.89 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=26.7
Q ss_pred hhhHHhcCCCHHHHHHHHHHh---CCCCchhhhhhh
Q 011347 4 TLQLLEMGFSENQVSLAIEKF---GSKTPISELADK 36 (488)
Q Consensus 4 ~~~l~~mgf~~~e~~~ai~~~---g~~~~~~~l~d~ 36 (488)
...|+.+||++.||..|+.+. ..+.+++++...
T Consensus 21 ~~AL~aLGY~~~ea~kav~~v~~~~~~~~~e~lIr~ 56 (62)
T 1ixs_A 21 VMALAALGFKEAQARAVVLDLLAQNPKARAQDLIKE 56 (62)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 467999999999999999998 346677777554
No 317
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=78.86 E-value=1.1 Score=42.17 Aligned_cols=40 Identities=23% Similarity=0.222 Sum_probs=32.9
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHH
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRI 394 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t 394 (488)
+.+.+||||-||.|+++..|.+.|.. .|+++|+++.....
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~g~~--~V~gvDis~~ml~~ 75 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQNGAK--LVYALDVGTNQLAW 75 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCS--EEEEECSSCCCCCH
T ss_pred CCCCEEEEEccCCCHHHHHHHhcCCC--EEEEEcCCHHHHHH
Confidence 35678999999999999999988852 47899999876544
No 318
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=78.64 E-value=1.6 Score=37.85 Aligned_cols=37 Identities=27% Similarity=0.394 Sum_probs=28.9
Q ss_pred hhhhhHHhcCCCH-HHHHHHHHHhCCCCchhhhhhhhhhc
Q 011347 2 EITLQLLEMGFSE-NQVSLAIEKFGSKTPISELADKIFSG 40 (488)
Q Consensus 2 ~k~~~l~~mgf~~-~e~~~ai~~~g~~~~~~~l~d~i~a~ 40 (488)
+++.+|.+|||++ +.+..|+.+++-| |+--+|.++..
T Consensus 68 ~qL~qL~eMGF~d~~~ni~AL~~t~Gd--ve~AVe~L~~~ 105 (108)
T 2cwb_A 68 PQLQQLRDMGIQDDELSLRALQATGGD--IQAALELIFAG 105 (108)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHTSC--HHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHhc
Confidence 3678999999976 6888999999854 66667777654
No 319
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=78.28 E-value=1.8 Score=40.39 Aligned_cols=64 Identities=16% Similarity=0.081 Sum_probs=38.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHH-HH---HHHHhhhcCCCCCcceeccccccC
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNR-RI---LKRWWESSGQTGELVQIEDIQALT 418 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~-~t---~~~~~~~~n~~g~lv~~~DI~~L~ 418 (488)
.+-+|||+=||.|.+...+.+..-. ..|+++|+++.+. +. .+......+..+..+..+|+.++.
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~ 91 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQN-TFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLP 91 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTT-EEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCC
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhh
Confidence 4568999999999999888743322 3478999994432 21 122111112222335567777774
No 320
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=77.93 E-value=1.6 Score=43.43 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=34.3
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCH---HHHHHHHH
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSE---TNRRILKR 397 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~---~a~~t~~~ 397 (488)
..+-.|||.|||.|...++..++|-+ .+++|+++ ..+.+.+.
T Consensus 241 ~~~~~vlDpF~GsGtt~~aa~~~~r~---~ig~e~~~~~~~~~~~~~~ 285 (319)
T 1eg2_A 241 HPGSTVLDFFAGSGVTARVAIQEGRN---SICTDAAPVFKEYYQKQLT 285 (319)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTCE---EEEEESSTHHHHHHHHHHH
T ss_pred CCCCEEEecCCCCCHHHHHHHHcCCc---EEEEECCccHHHHHHHHHH
Confidence 35567999999999999999999964 57899999 66665544
No 321
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=77.33 E-value=1.8 Score=33.39 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=27.2
Q ss_pred hhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhh
Q 011347 4 TLQLLEMGFSENQVSLAIEKFGSKTPISELADKIF 38 (488)
Q Consensus 4 ~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~ 38 (488)
+..|++|||+++-|..|+.+-|.. .|+.-.|.|.
T Consensus 13 lq~L~eMGFd~erae~Alk~Tg~~-Gle~AmewL~ 46 (54)
T 2cos_A 13 LQELVNAGCDQEMAGRALKQTGSR-SIEAALEYIS 46 (54)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTSC-CHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 468999999999999999999985 4655555553
No 322
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=76.32 E-value=2 Score=32.05 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=23.0
Q ss_pred hhhhHHhcCCCHHHHHHHHHHhCCCC
Q 011347 3 ITLQLLEMGFSENQVSLAIEKFGSKT 28 (488)
Q Consensus 3 k~~~l~~mgf~~~e~~~ai~~~g~~~ 28 (488)
.+..|++|||+.+.|..|+.....+.
T Consensus 7 ~I~~L~s~Gf~~~~~~rAL~ia~Nni 32 (46)
T 2oo9_A 7 EIENLMSQGYSYQDIQKALVIAQNNI 32 (46)
T ss_dssp HHHHHHHTTBCHHHHHHHHHHTTTCH
T ss_pred HHHHHHHcCCCHHHHHHHHHHhhccH
Confidence 56789999999999999999888874
No 323
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=74.89 E-value=4.9 Score=40.90 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=44.5
Q ss_pred CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccC
Q 011347 355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALT 418 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~ 418 (488)
+.+||++-.|.|.++..|...+- .+-|+++|+|+.....++.... .....++.+|+-+++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~~---~~~l~ii~~D~l~~~ 118 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKFE---GSPLQILKRDPYDWS 118 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHTT---TSSCEEECSCTTCHH
T ss_pred CCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhcc---CCCEEEEECCccchh
Confidence 57899999999999999987521 1247899999999988876431 222336779996554
No 324
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=74.63 E-value=2.4 Score=44.48 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=29.7
Q ss_pred hcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347 9 EMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 41 (488)
Q Consensus 9 ~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~ 41 (488)
--|=+++|+..+|++.|++.-...|+|-|+..-
T Consensus 38 ~a~~~~~~~~~~~~~~~~~~~~~~l~~e~~~r~ 70 (419)
T 3sso_A 38 LAGGHDSELRELTQKYDPAMISRLLVAEILSRC 70 (419)
T ss_dssp HHTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHhhCHHHHHHHHHHHHHhcc
Confidence 458889999999999999999999999998766
No 325
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=74.40 E-value=5.1 Score=40.09 Aligned_cols=41 Identities=12% Similarity=0.079 Sum_probs=34.9
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHH
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK 396 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~ 396 (488)
..+.+|||+=||.|.+...|.+.|.+ ++++|+++...+..+
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~~g~~---v~gvD~s~~~~~~a~ 146 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQEAGVR---HLGFEPSSGVAAKAR 146 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHHTTCE---EEEECCCHHHHHHHH
T ss_pred CCCCEEEEecCCCCHHHHHHHHcCCc---EEEECCCHHHHHHHH
Confidence 35679999999999999999999974 678999998776654
No 326
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=74.28 E-value=1 Score=44.37 Aligned_cols=32 Identities=16% Similarity=0.095 Sum_probs=26.4
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeC
Q 011347 352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIET 387 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEi 387 (488)
++.+.+||||-||.||++.-+-+.| .|++||+
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~~----~V~gvD~ 111 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGLK----NVREVKG 111 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTST----TEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhcC----CEEEEec
Confidence 4557899999999999999888775 2678888
No 327
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=69.11 E-value=4.9 Score=41.55 Aligned_cols=73 Identities=14% Similarity=0.186 Sum_probs=50.1
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347 352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 431 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~ 431 (488)
+..|++||||=|.-||.+.-+-+.|.. |++||+.+.+-... ..++..++.+|..++... .++
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg~~---V~aVD~~~l~~~l~-------~~~~V~~~~~d~~~~~~~--------~~~ 270 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRNMW---VYSVDNGPMAQSLM-------DTGQVTWLREDGFKFRPT--------RSN 270 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTTCE---EEEECSSCCCHHHH-------TTTCEEEECSCTTTCCCC--------SSC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCCCE---EEEEEhhhcChhhc-------cCCCeEEEeCccccccCC--------CCC
Confidence 457899999999999999999888864 78999877653222 122333455676655432 257
Q ss_pred ccEEEecCCCC
Q 011347 432 IDFVICQNSVP 442 (488)
Q Consensus 432 ~DLVIGGpPCQ 442 (488)
+|+|+.==-|+
T Consensus 271 ~D~vvsDm~~~ 281 (375)
T 4auk_A 271 ISWMVCDMVEK 281 (375)
T ss_dssp EEEEEECCSSC
T ss_pred cCEEEEcCCCC
Confidence 99988754443
No 328
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=67.41 E-value=5.1 Score=39.56 Aligned_cols=65 Identities=14% Similarity=0.154 Sum_probs=44.2
Q ss_pred CCCCCcccccCC------CCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcc-eeccccccChhhHHH
Q 011347 352 FPGGLTMLSVFS------GIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELV-QIEDIQALTTKKFES 424 (488)
Q Consensus 352 fp~~itVLDLFS------GiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv-~~~DI~~L~~~~Ie~ 424 (488)
.+.+.+||||=| |.|+ .+..+.+|-. ..|+++|+++. + .+..+ +.+|+.++...
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~-~~V~gvDis~~----v---------~~v~~~i~gD~~~~~~~---- 121 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTG-TLLVDSDLNDF----V---------SDADSTLIGDCATVHTA---- 121 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH-HHHHHHSCTT-CEEEEEESSCC----B---------CSSSEEEESCGGGCCCS----
T ss_pred CCCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCC-CEEEEEECCCC----C---------CCCEEEEECccccCCcc----
Confidence 356789999999 4477 6666666522 23789999987 1 12336 77899876421
Q ss_pred hhhccCCccEEEecCC
Q 011347 425 LIHKLGSIDFVICQNS 440 (488)
Q Consensus 425 l~~~~g~~DLVIGGpP 440 (488)
+.||+|+.-.+
T Consensus 122 -----~~fD~Vvsn~~ 132 (290)
T 2xyq_A 122 -----NKWDLIISDMY 132 (290)
T ss_dssp -----SCEEEEEECCC
T ss_pred -----CcccEEEEcCC
Confidence 47999997544
No 329
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=65.95 E-value=6.9 Score=43.02 Aligned_cols=70 Identities=14% Similarity=0.224 Sum_probs=46.1
Q ss_pred CCcccccCCCCChhHH----HHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC--CcceeccccccChhhHHHhhhc
Q 011347 355 GLTMLSVFSGIGGAEV----TLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHK 428 (488)
Q Consensus 355 ~itVLDLFSGiGGlsl----GL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g--~lv~~~DI~~L~~~~Ie~l~~~ 428 (488)
...|+|+=||-|-+.. |..++|-+++ |+|||.++.|..+.+.-- .|.-+ ..++.+|+++++.-
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vk-VyAVEknp~A~~a~~~v~--~N~~~dkVtVI~gd~eev~LP-------- 426 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIK-LYAVEKNPNAVVTLENWQ--FEEWGSQVTVVSSDMREWVAP-------- 426 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEE-EEEEESCHHHHHHHHHHH--HHTTGGGEEEEESCTTTCCCS--------
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcE-EEEEECCHHHHHHHHHHH--hccCCCeEEEEeCcceeccCC--------
Confidence 3568999999997743 3345555544 789999999887776532 22212 22567899887531
Q ss_pred cCCccEEE
Q 011347 429 LGSIDFVI 436 (488)
Q Consensus 429 ~g~~DLVI 436 (488)
.++||||
T Consensus 427 -EKVDIIV 433 (637)
T 4gqb_A 427 -EKADIIV 433 (637)
T ss_dssp -SCEEEEE
T ss_pred -cccCEEE
Confidence 3688887
No 330
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=65.32 E-value=15 Score=36.62 Aligned_cols=75 Identities=16% Similarity=0.148 Sum_probs=51.1
Q ss_pred CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhc--cCCc
Q 011347 355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK--LGSI 432 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~--~g~~ 432 (488)
+-.+||.-+|.||-+.++-+.+- .|+++|.|+.+....+. ... ....++.+|-.++. ..+.. .+.|
T Consensus 23 gg~~VD~T~G~GGHS~~il~~~g---~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l~-----~~L~~~g~~~v 90 (285)
T 1wg8_A 23 GGVYVDATLGGAGHARGILERGG---RVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHLK-----RHLAALGVERV 90 (285)
T ss_dssp TCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGHH-----HHHHHTTCSCE
T ss_pred CCEEEEeCCCCcHHHHHHHHCCC---EEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchHH-----HHHHHcCCCCc
Confidence 45799999999999999988753 37899999999887765 322 11224455555443 22222 2579
Q ss_pred cEEEecCCC
Q 011347 433 DFVICQNSV 441 (488)
Q Consensus 433 DLVIGGpPC 441 (488)
|.|+.....
T Consensus 91 DgIL~DLGv 99 (285)
T 1wg8_A 91 DGILADLGV 99 (285)
T ss_dssp EEEEEECSC
T ss_pred CEEEeCCcc
Confidence 999975544
No 331
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=63.95 E-value=3.7 Score=42.18 Aligned_cols=36 Identities=14% Similarity=0.350 Sum_probs=30.1
Q ss_pred hhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhc
Q 011347 3 ITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSG 40 (488)
Q Consensus 3 k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~ 40 (488)
.+..|++|||++++|..|+...+.+ ++.-++.+|.+
T Consensus 171 ~i~~l~~MGf~~~~~~~AL~a~~nn--~~~A~e~L~~g 206 (368)
T 1oqy_A 171 MLTEIMSMGYERERVVAALRASYNN--PHRAVEYLLTG 206 (368)
T ss_dssp HHHHHHTTTCCSHHHHHHHHHSCSS--TTHHHHTTTTS
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhC
Confidence 4678999999999999999999984 45557887765
No 332
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=61.18 E-value=13 Score=34.87 Aligned_cols=66 Identities=23% Similarity=0.261 Sum_probs=39.1
Q ss_pred hHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHH----hhhccCCccEEEec
Q 011347 368 AEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES----LIHKLGSIDFVICQ 438 (488)
Q Consensus 368 lslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~----l~~~~g~~DLVIGG 438 (488)
....|.+.|.+ |+.++.++...+.+..-....+......+..||++- +.++. ....+|.+|+++-.
T Consensus 24 iA~~la~~Ga~---Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~--~~v~~~~~~~~~~~G~iD~lvnn 93 (256)
T 4fs3_A 24 VAKVLDQLGAK---LVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSD--EEVINGFEQIGKDVGNIDGVYHS 93 (256)
T ss_dssp HHHHHHHTTCE---EEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCH--HHHHHHHHHHHHHHCCCSEEEEC
T ss_pred HHHHHHHCCCE---EEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCH--HHHHHHHHHHHHHhCCCCEEEec
Confidence 35567789986 345677766555444433333333344566788754 33433 33468999999843
No 333
>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28
Probab=61.15 E-value=5.2 Score=39.25 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=32.8
Q ss_pred ccccccCCC-CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHH
Q 011347 346 SVLKSMFPG-GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR 397 (488)
Q Consensus 346 svLK~~fp~-~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~ 397 (488)
..+.+++|. .-+.+|.|+|.|+....+.. +.++.+|+|+...+.|+.
T Consensus 26 ~~i~~~lp~~~~~yvEpF~GggaV~~~~~~-----~~~i~ND~n~~Lin~y~~ 73 (284)
T 2dpm_A 26 PVIRELIPKTYNRYFEPFVGGGALFFDLAP-----KDAVINDFNAELINCYQQ 73 (284)
T ss_dssp HHHHHHSCSSCSCEEETTCTTCHHHHHHCC-----SEEEEEESCHHHHHHHHH
T ss_pred HHHHHHhccccCEEEeecCCccHHHHhhhc-----cceeeeecchHHHHHHHH
Confidence 334455555 35799999998887665532 357789999998777653
No 334
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=59.54 E-value=11 Score=37.09 Aligned_cols=44 Identities=7% Similarity=0.016 Sum_probs=36.7
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhh
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 400 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~ 400 (488)
+..-+||||=||.|=+++++. -+ ..++++|||+...++.+.+..
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~-~~---~~y~a~DId~~~i~~ar~~~~ 147 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER-GI---ASVWGCDIHQGLGDVITPFAR 147 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT-TC---SEEEEEESBHHHHHHHHHHHH
T ss_pred CCCCeEEEecCCccHHHHHhc-cC---CeEEEEeCCHHHHHHHHHHHH
Confidence 456799999999999999988 33 358899999999999998753
No 335
>2g1p_A DNA adenine methylase; DAM methylation, GATC recognition, base flipping, bacterial factor, transferase-DNA complex; HET: DNA SAH; 1.89A {Escherichia coli} PDB: 2ore_D*
Probab=59.51 E-value=4.5 Score=39.52 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=33.3
Q ss_pred hccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHH
Q 011347 345 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR 397 (488)
Q Consensus 345 lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~ 397 (488)
+.-+.+++|..-+.+|.|+|.|+....+ . .+.++.+|+|+.....|+.
T Consensus 18 ~~~i~~~~p~~~~yvEpF~Ggg~V~~~~--~---~~~~i~ND~n~~lin~y~~ 65 (278)
T 2g1p_A 18 LDDIKRHLPKGECLVEPFVGAGSVFLNT--D---FSRYILADINSDLISLYNI 65 (278)
T ss_dssp HHHHHHHCCCCSEEEETTCTTCHHHHTC--C---CSEEEEEESCHHHHHHHHH
T ss_pred HHHHHHhccccCeEEeeccCccHHHHhh--c---ccceEEEeccHHHHHHHHH
Confidence 3344555666668999999988765543 2 2457889999998776654
No 336
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=57.94 E-value=4.7 Score=45.17 Aligned_cols=80 Identities=11% Similarity=0.080 Sum_probs=49.1
Q ss_pred CCcccccCCCCChhHH----HHHHcC---------CeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChh
Q 011347 355 GLTMLSVFSGIGGAEV----TLHRLG---------IKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTK 420 (488)
Q Consensus 355 ~itVLDLFSGiGGlsl----GL~~aG---------i~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~ 420 (488)
...|+|+=||-|-++. |.+.+| -.. -|+|||.++.|..+++..-. ++..+ ..++.+|++++..-
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~-kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp 487 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKV-KLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGI 487 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEE-EEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCcccccccccccc-EEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhcccc
Confidence 4579999999999964 233355 332 57999999988777665322 11112 33567888877521
Q ss_pred hHHHhhhccCCccEEEecC
Q 011347 421 KFESLIHKLGSIDFVICQN 439 (488)
Q Consensus 421 ~Ie~l~~~~g~~DLVIGGp 439 (488)
.-....+++||||---
T Consensus 488 ---~~~~~~ekVDIIVSEl 503 (745)
T 3ua3_A 488 ---AKDRGFEQPDIIVSEL 503 (745)
T ss_dssp ---HHHTTCCCCSEEEECC
T ss_pred ---cccCCCCcccEEEEec
Confidence 0001135799998543
No 337
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=57.06 E-value=8.7 Score=38.35 Aligned_cols=48 Identities=10% Similarity=0.049 Sum_probs=40.0
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhh
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 401 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~ 401 (488)
+..-+||||=||.|=+++.+..+.-. ..++++|||+.+.+..+.+...
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~-a~y~a~DId~~~le~a~~~l~~ 178 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAE-TVYIASDIDARLVGFVDEALTR 178 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTT-CEEEEEESBHHHHHHHHHHHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHHh
Confidence 44679999999999999999877433 4689999999999999987654
No 338
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=55.62 E-value=33 Score=32.13 Aligned_cols=59 Identities=27% Similarity=0.363 Sum_probs=39.0
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCC--CC-Ccceecccccc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ--TG-ELVQIEDIQAL 417 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~--~g-~lv~~~DI~~L 417 (488)
+.-+||++=| |.-++-|-++ | ..|++||.|+.-.+..+.|+...+. .. ..++.+|+.+.
T Consensus 30 ~a~~VLEiGt--GySTl~lA~~~~---g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~ 92 (202)
T 3cvo_A 30 EAEVILEYGS--GGSTVVAAELPG---KHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPT 92 (202)
T ss_dssp HCSEEEEESC--SHHHHHHHTSTT---CEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSB
T ss_pred CCCEEEEECc--hHHHHHHHHcCC---CEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhh
Confidence 3457888855 4444444444 3 3478999999999999999987643 22 23566886554
No 339
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=54.39 E-value=20 Score=34.63 Aligned_cols=82 Identities=13% Similarity=0.073 Sum_probs=48.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCc
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 432 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~ 432 (488)
.+.+|||+=||.|.+...+.+..-..+ ++.+|+ +......+.+....+... ..+..+|+.+.... + .+++
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~------~~~~ 249 (352)
T 3mcz_A 179 RARTVIDLAGGHGTYLAQVLRRHPQLT-GQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNF-E------GGAA 249 (352)
T ss_dssp TCCEEEEETCTTCHHHHHHHHHCTTCE-EEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGG-T------TCCE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCe-EEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCccc-C------CCCc
Confidence 378999999999999999987632233 567899 555555554443322111 22455666543210 0 1358
Q ss_pred cEEEecCCCCCc
Q 011347 433 DFVICQNSVPQI 444 (488)
Q Consensus 433 DLVIGGpPCQ~F 444 (488)
|+|+...-...+
T Consensus 250 D~v~~~~vlh~~ 261 (352)
T 3mcz_A 250 DVVMLNDCLHYF 261 (352)
T ss_dssp EEEEEESCGGGS
T ss_pred cEEEEecccccC
Confidence 988875544433
No 340
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=53.59 E-value=10 Score=30.53 Aligned_cols=28 Identities=14% Similarity=0.340 Sum_probs=24.6
Q ss_pred hhhhhHHhcCCCHHHHHHHHHHhCCCCc
Q 011347 2 EITLQLLEMGFSENQVSLAIEKFGSKTP 29 (488)
Q Consensus 2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~ 29 (488)
.|...|..-|-+++||..|+.+.|..++
T Consensus 37 ~K~~FL~sKGLt~eEI~~Al~ra~~~~~ 64 (70)
T 2w84_A 37 TRRAFLKKKGLTDEEIDMAFQQSGTAAD 64 (70)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHccCCCC
Confidence 3678899999999999999999998654
No 341
>1yf3_A DNA adenine methylase; T4DAM, methyltransferase, transferase-DNA complex; HET: DNA SAH; 2.29A {Enterobacteria phage T4} SCOP: c.66.1.28 PDB: 1yfj_A* 1yfl_A* 1q0s_A* 1q0t_A*
Probab=53.15 E-value=4.4 Score=39.09 Aligned_cols=47 Identities=26% Similarity=0.317 Sum_probs=34.0
Q ss_pred hccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHH
Q 011347 345 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR 397 (488)
Q Consensus 345 lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~ 397 (488)
+.-+.+++|..-+.+|.|+|.|+....+. .+ ++.+|+|+.....|+.
T Consensus 15 ~~~i~~~lP~~~~yvEpF~GggaV~~~~~-----~~-~viNDin~~li~~~~~ 61 (259)
T 1yf3_A 15 LPELKSHFPKYNRFVDLFCGGLSVSLNVN-----GP-VLANDIQEPIIEMYKR 61 (259)
T ss_dssp HHHHHHTCCCCSEEEETTCTTCTTGGGSC-----SS-EEEECSCHHHHHHHHH
T ss_pred HHHHHHhCcccCeEEEecCCccHHHHhcc-----cc-EEEecCChHHHHHHHH
Confidence 34445556666689999999988765442 14 6789999998877765
No 342
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=52.67 E-value=13 Score=35.56 Aligned_cols=60 Identities=17% Similarity=0.196 Sum_probs=37.4
Q ss_pred HHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHH----hhhccCCccEEEec
Q 011347 369 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES----LIHKLGSIDFVICQ 438 (488)
Q Consensus 369 slGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~----l~~~~g~~DLVIGG 438 (488)
...|.+.|.+ |+.++.++.....+.. .......+..||++-. .++. ...++|.+|++|-.
T Consensus 19 a~~la~~Ga~---V~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~~--~v~~~v~~~~~~~g~iDiLVNN 82 (247)
T 3ged_A 19 CLDFLEAGDK---VCFIDIDEKRSADFAK-----ERPNLFYFHGDVADPL--TLKKFVEYAMEKLQRIDVLVNN 82 (247)
T ss_dssp HHHHHHTTCE---EEEEESCHHHHHHHHT-----TCTTEEEEECCTTSHH--HHHHHHHHHHHHHSCCCEEEEC
T ss_pred HHHHHHCCCE---EEEEeCCHHHHHHHHH-----hcCCEEEEEecCCCHH--HHHHHHHHHHHHcCCCCEEEEC
Confidence 5667899986 4567888876544432 1223345568887543 3433 33468999999953
No 343
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=51.26 E-value=14 Score=31.38 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=32.1
Q ss_pred hhhHHhcCCCHHHHHHHHHHh-----CCCCchhhhhhhhhhccc
Q 011347 4 TLQLLEMGFSENQVSLAIEKF-----GSKTPISELADKIFSGQI 42 (488)
Q Consensus 4 ~~~l~~mgf~~~e~~~ai~~~-----g~~~~~~~l~d~i~a~~~ 42 (488)
....++|||....+..+|.+= .+=.++++|++.++.++-
T Consensus 31 V~~alemGf~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~~e 74 (104)
T 2kna_A 31 VQEAIRMGFSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNAQK 74 (104)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHcCccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 356789999999999998872 445689999999998874
No 344
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=50.12 E-value=19 Score=34.58 Aligned_cols=63 Identities=13% Similarity=0.074 Sum_probs=37.9
Q ss_pred HHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHh----hhccCCccEEEe
Q 011347 369 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL----IHKLGSIDFVIC 437 (488)
Q Consensus 369 slGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l----~~~~g~~DLVIG 437 (488)
...|-+.|.+ |+.++.++...+....-.... ....+.+..||++-+ .++.+ ..++|.+|+++-
T Consensus 24 A~~la~~Ga~---Vv~~~~~~~~~~~~~~~i~~~-g~~~~~~~~Dvt~~~--~v~~~~~~~~~~~G~iDiLVN 90 (254)
T 4fn4_A 24 AKKFALNDSI---VVAVELLEDRLNQIVQELRGM-GKEVLGVKADVSKKK--DVEEFVRRTFETYSRIDVLCN 90 (254)
T ss_dssp HHHHHHTTCE---EEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTTSHH--HHHHHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHcCCE---EEEEECCHHHHHHHHHHHHhc-CCcEEEEEccCCCHH--HHHHHHHHHHHHcCCCCEEEE
Confidence 4557789975 456788887654443322222 122345668887543 44443 346899999984
No 345
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=48.73 E-value=17 Score=34.89 Aligned_cols=77 Identities=9% Similarity=0.024 Sum_probs=45.9
Q ss_pred CcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccCCccE
Q 011347 356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSIDF 434 (488)
Q Consensus 356 itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL 434 (488)
.+|||+-||.|.+...+.+..=.. .++++|+ +...+..+......+. ....+..+|+.+ . + .+++|+
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~---~------~~~~D~ 236 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSA-RGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-E---V------PSNGDI 236 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTC-EEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-C---C------CSSCSE
T ss_pred CEEEEeCCCchHHHHHHHHHCCCC-EEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-C---C------CCCCCE
Confidence 799999999999999987762112 3578999 7666555544322110 112244566543 1 1 135888
Q ss_pred EEecCCCCCc
Q 011347 435 VICQNSVPQI 444 (488)
Q Consensus 435 VIGGpPCQ~F 444 (488)
|+.......+
T Consensus 237 v~~~~vl~~~ 246 (334)
T 2ip2_A 237 YLLSRIIGDL 246 (334)
T ss_dssp EEEESCGGGC
T ss_pred EEEchhccCC
Confidence 8866554434
No 346
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=46.98 E-value=10 Score=35.72 Aligned_cols=43 Identities=23% Similarity=0.228 Sum_probs=31.9
Q ss_pred CCCcccccCCCCChhHHHHHH-cCCeeeeEEEeeCCHHHHHHHHHHh
Q 011347 354 GGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWW 399 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~-aGi~~k~vvsVEid~~a~~t~~~~~ 399 (488)
.+.+||||=||.|.+..-+.. .|. -|+++|+++.+.+..+.+.
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~---~v~gvD~s~~~l~~a~~~~ 114 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFE---DITMTDFLEVNRQELGRWL 114 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCS---EEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCCC---eEEEeCCCHHHHHHHHHHH
Confidence 567899999999995543333 243 4789999999988777654
No 347
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=46.41 E-value=14 Score=33.76 Aligned_cols=41 Identities=7% Similarity=0.014 Sum_probs=31.0
Q ss_pred cccCCCCCcccccCCCCC-hhHHHHHH-cCCeeeeEEEeeCCHHHH
Q 011347 349 KSMFPGGLTMLSVFSGIG-GAEVTLHR-LGIKLKGVISIETSETNR 392 (488)
Q Consensus 349 K~~fp~~itVLDLFSGiG-GlslGL~~-aGi~~k~vvsVEid~~a~ 392 (488)
...+..+.+||++=||-| -.+.-|.+ .|++ |.++||++.|.
T Consensus 30 ~~~~~~~~rVlEVG~G~g~~vA~~La~~~g~~---V~atDInp~Av 72 (153)
T 2k4m_A 30 IRCSGPGTRVVEVGAGRFLYVSDYIRKHSKVD---LVLTDIKPSHG 72 (153)
T ss_dssp HHHSCSSSEEEEETCTTCCHHHHHHHHHSCCE---EEEECSSCSST
T ss_pred HhcCCCCCcEEEEccCCChHHHHHHHHhCCCe---EEEEECCcccc
Confidence 333445679999988888 47777775 9986 57899999864
No 348
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=45.73 E-value=9.4 Score=29.31 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=18.4
Q ss_pred hhhhHHhcCCCHHHHH-HHHHHhCCC
Q 011347 3 ITLQLLEMGFSENQVS-LAIEKFGSK 27 (488)
Q Consensus 3 k~~~l~~mgf~~~e~~-~ai~~~g~~ 27 (488)
++.+|.+|||.+.+.. .|+.+.|-+
T Consensus 12 ~L~~L~eMGF~D~~~N~~aL~~~~gn 37 (54)
T 2cp8_A 12 LMAHLFEMGFCDRQLNLRLLKKHNYN 37 (54)
T ss_dssp HHHHHHHHTCCCHHHHHHHHTTTTTC
T ss_pred HHHHHHHcCCCcHHHHHHHHHHcCCC
Confidence 5678999999666655 677777654
No 349
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=44.27 E-value=14 Score=34.46 Aligned_cols=73 Identities=23% Similarity=0.232 Sum_probs=45.0
Q ss_pred CCcccccCCCCChhHHHHHHc----CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccC
Q 011347 355 GLTMLSVFSGIGGAEVTLHRL----GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 430 (488)
Q Consensus 355 ~itVLDLFSGiGGlslGL~~a----Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g 430 (488)
+-+|||+=||.|+.+..|.+. +-. ..|++||+++...+..+. . .....++.+|+.++.. +..+ ...
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~-~~V~gvD~s~~~l~~a~~----~-~~~v~~~~gD~~~~~~--l~~~--~~~ 151 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGID-CQVIGIDRDLSRCQIPAS----D-MENITLHQGDCSDLTT--FEHL--REM 151 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCC-CEEEEEESCCTTCCCCGG----G-CTTEEEEECCSSCSGG--GGGG--SSS
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCC-CEEEEEeCChHHHHHHhc----c-CCceEEEECcchhHHH--HHhh--ccC
Confidence 368999999999999988775 211 247899999986443321 1 1223356788876521 1110 112
Q ss_pred CccEEEe
Q 011347 431 SIDFVIC 437 (488)
Q Consensus 431 ~~DLVIG 437 (488)
.+|+|+-
T Consensus 152 ~fD~I~~ 158 (236)
T 2bm8_A 152 AHPLIFI 158 (236)
T ss_dssp CSSEEEE
T ss_pred CCCEEEE
Confidence 6898874
No 350
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=42.47 E-value=52 Score=32.44 Aligned_cols=82 Identities=12% Similarity=0.093 Sum_probs=51.5
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccC
Q 011347 352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG 430 (488)
Q Consensus 352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g 430 (488)
+....+|||+=||.|.+...+.+..-..+ ++++|+ +......+......+.. ...+..+|+.+ .++ .
T Consensus 200 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~----~~p------~ 267 (369)
T 3gwz_A 200 FSGAATAVDIGGGRGSLMAAVLDAFPGLR-GTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE----TIP------D 267 (369)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTCE-EEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT----CCC------S
T ss_pred CccCcEEEEeCCCccHHHHHHHHHCCCCe-EEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC----CCC------C
Confidence 34668999999999999999987732233 578999 77666666554433211 12244566641 111 2
Q ss_pred CccEEEecCCCCCcc
Q 011347 431 SIDFVICQNSVPQIP 445 (488)
Q Consensus 431 ~~DLVIGGpPCQ~FS 445 (488)
++|+|+...-...++
T Consensus 268 ~~D~v~~~~vlh~~~ 282 (369)
T 3gwz_A 268 GADVYLIKHVLHDWD 282 (369)
T ss_dssp SCSEEEEESCGGGSC
T ss_pred CceEEEhhhhhccCC
Confidence 688888766555444
No 351
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...
Probab=41.95 E-value=77 Score=29.61 Aligned_cols=97 Identities=19% Similarity=0.257 Sum_probs=41.0
Q ss_pred hhcccCcchhhhccccccCC----CCCcccccCCCCChhHH----HHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC
Q 011347 334 HCFQTDTLGYHLSVLKSMFP----GGLTMLSVFSGIGGAEV----TLHRLGIKLKGVISIETSETNRRILKRWWESSGQT 405 (488)
Q Consensus 334 nsfqvdti~~~lsvLK~~fp----~~itVLDLFSGiGGlsl----GL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~ 405 (488)
+.|+.|-..+|.+.+++.+. .+.+|| +..|.||+-. .|.+.|.+ |+.++.++.....+.......+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~vl-ITGasggIG~~la~~l~~~G~~---V~~~~r~~~~~~~~~~~~~~~~~~ 78 (286)
T 1xu9_A 3 HQHQHQHQHQHQQPLNEEFRPEMLQGKKVI-VTGASKGIGREMAYHLAKMGAH---VVVTARSKETLQKVVSHCLELGAA 78 (286)
T ss_dssp ------------CCCSSCCCGGGGTTCEEE-ESSCSSHHHHHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHHTCS
T ss_pred chhhccchhhhccccccCCChhhcCCCEEE-EeCCCcHHHHHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHHhCCC
Confidence 34444445555555544332 222332 3444455432 35577975 455677765443332211111111
Q ss_pred CCcceeccccccChhhHHHhh----hccCCccEEE
Q 011347 406 GELVQIEDIQALTTKKFESLI----HKLGSIDFVI 436 (488)
Q Consensus 406 g~lv~~~DI~~L~~~~Ie~l~----~~~g~~DLVI 436 (488)
...++..|+++.. .++.++ ..+|++|+||
T Consensus 79 ~~~~~~~Dl~d~~--~v~~~~~~~~~~~g~iD~li 111 (286)
T 1xu9_A 79 SAHYIAGTMEDMT--FAEQFVAQAGKLMGGLDMLI 111 (286)
T ss_dssp EEEEEECCTTCHH--HHHHHHHHHHHHHTSCSEEE
T ss_pred ceEEEeCCCCCHH--HHHHHHHHHHHHcCCCCEEE
Confidence 1234557887543 333332 3568999998
No 352
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=40.74 E-value=19 Score=34.54 Aligned_cols=57 Identities=14% Similarity=0.280 Sum_probs=36.8
Q ss_pred HHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEEEe
Q 011347 369 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVIC 437 (488)
Q Consensus 369 slGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIG 437 (488)
...|.+.|.+ |+.++.++.... ............||++ .+.+++++.++|.+|+++-
T Consensus 28 a~~la~~Ga~---Vv~~~~~~~~~~-------~~~~~~~~~~~~Dv~~--~~~v~~~~~~~g~iDiLVN 84 (242)
T 4b79_A 28 AMQFAELGAE---VVALGLDADGVH-------APRHPRIRREELDITD--SQRLQRLFEALPRLDVLVN 84 (242)
T ss_dssp HHHHHHTTCE---EEEEESSTTSTT-------SCCCTTEEEEECCTTC--HHHHHHHHHHCSCCSEEEE
T ss_pred HHHHHHCCCE---EEEEeCCHHHHh-------hhhcCCeEEEEecCCC--HHHHHHHHHhcCCCCEEEE
Confidence 4667799986 455677765321 1112222345578875 5678888888999999984
No 353
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=40.17 E-value=33 Score=32.96 Aligned_cols=64 Identities=16% Similarity=-0.021 Sum_probs=36.8
Q ss_pred HHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHH----hhhccCCccEEEec
Q 011347 369 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES----LIHKLGSIDFVICQ 438 (488)
Q Consensus 369 slGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~----l~~~~g~~DLVIGG 438 (488)
...|-+.|.+ |+.++.++...+....-.... ......+..||++- +.++. ...++|.+|+++-.
T Consensus 26 a~~la~~Ga~---Vvi~~~~~~~~~~~~~~l~~~-g~~~~~~~~Dv~~~--~~v~~~~~~~~~~~G~iDiLVNN 93 (255)
T 4g81_D 26 AEGLAAAGAR---VILNDIRATLLAESVDTLTRK-GYDAHGVAFDVTDE--LAIEAAFSKLDAEGIHVDILINN 93 (255)
T ss_dssp HHHHHHTTCE---EEECCSCHHHHHHHHHHHHHT-TCCEEECCCCTTCH--HHHHHHHHHHHHTTCCCCEEEEC
T ss_pred HHHHHHCCCE---EEEEECCHHHHHHHHHHHHhc-CCcEEEEEeeCCCH--HHHHHHHHHHHHHCCCCcEEEEC
Confidence 4667799986 455788876543322212222 12233456788764 33433 33468999999854
No 354
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=39.79 E-value=61 Score=30.45 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=30.0
Q ss_pred CCCcccccCCCCChhHHHH----HHcCCeee-eEEEeeCCHHHHHHHHHHh
Q 011347 354 GGLTMLSVFSGIGGAEVTL----HRLGIKLK-GVISIETSETNRRILKRWW 399 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL----~~aGi~~k-~vvsVEid~~a~~t~~~~~ 399 (488)
.+.+|||+=||.|.++..+ ...+-.+. .++++|+++...+..+...
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~ 102 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELV 102 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHH
Confidence 4578999999999876432 22111122 2489999999877776543
No 355
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=39.53 E-value=57 Score=33.70 Aligned_cols=81 Identities=20% Similarity=0.154 Sum_probs=47.6
Q ss_pred CcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC--------CCcceeccccccChhhHHHhhh
Q 011347 356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--------GELVQIEDIQALTTKKFESLIH 427 (488)
Q Consensus 356 itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~--------g~lv~~~DI~~L~~~~Ie~l~~ 427 (488)
-+||=+=.|.||....+.+... +.+..||||+...+..+.|+...+.. ...++.+|-.+ -|++...
T Consensus 207 krVLIIGgGdG~~~revlkh~~--~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~----fl~~~~~ 280 (381)
T 3c6k_A 207 KDVLILGGGDGGILCEIVKLKP--KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIP----VLKRYAK 280 (381)
T ss_dssp CEEEEEECTTCHHHHHHHTTCC--SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHH----HHHHHHH
T ss_pred CeEEEECCCcHHHHHHHHhcCC--ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHH----HHHhhhh
Confidence 4677777777777666655543 56788999999999998876432110 01123344332 1222222
Q ss_pred ccCCccEEEecCCCC
Q 011347 428 KLGSIDFVICQNSVP 442 (488)
Q Consensus 428 ~~g~~DLVIGGpPCQ 442 (488)
..+.+|+||.=.+-.
T Consensus 281 ~~~~yDvIIvDl~D~ 295 (381)
T 3c6k_A 281 EGREFDYVINDLTAV 295 (381)
T ss_dssp HTCCEEEEEEECCSS
T ss_pred ccCceeEEEECCCCC
Confidence 335799999865533
No 356
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=37.47 E-value=57 Score=29.99 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=35.8
Q ss_pred hHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHH----hhhccCCccEEEecC
Q 011347 368 AEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES----LIHKLGSIDFVICQN 439 (488)
Q Consensus 368 lslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~----l~~~~g~~DLVIGGp 439 (488)
+...|.+.|.++ +.++.++.....++..-...+.....++..|+++.. .++. +...++.+|+||-..
T Consensus 25 ia~~l~~~G~~V---~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--~v~~~~~~~~~~~g~id~li~~A 95 (266)
T 3oig_A 25 IARSLHEAGARL---IFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDA--EIETCFASIKEQVGVIHGIAHCI 95 (266)
T ss_dssp HHHHHHHTTCEE---EEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSH--HHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHCCCEE---EEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHH--HHHHHHHHHHHHhCCeeEEEEcc
Confidence 345567889864 344555543333333222221112345568888654 3333 334568999998654
No 357
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=36.56 E-value=22 Score=27.28 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.3
Q ss_pred hhhhhHHhcCCCHHHHHHHHHHh
Q 011347 2 EITLQLLEMGFSENQVSLAIEKF 24 (488)
Q Consensus 2 ~k~~~l~~mgf~~~e~~~ai~~~ 24 (488)
.|...|..-|.+++||..|+.|+
T Consensus 32 ~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 32 TRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHcC
Confidence 36788999999999999999874
No 358
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=34.41 E-value=61 Score=29.81 Aligned_cols=74 Identities=19% Similarity=0.183 Sum_probs=38.8
Q ss_pred CCCCChh----HHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhh----hccCCcc
Q 011347 362 FSGIGGA----EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI----HKLGSID 433 (488)
Q Consensus 362 FSGiGGl----slGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~----~~~g~~D 433 (488)
--|.||+ ...|.+.|.+ |+.++.++.....+.............++..|+..-+.+.++.++ ..+|.+|
T Consensus 18 TGas~gIG~aia~~l~~~G~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id 94 (252)
T 3f1l_A 18 TGASDGIGREAAMTYARYGAT---VILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVNYPRLD 94 (252)
T ss_dssp ESTTSHHHHHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHHCSCCS
T ss_pred eCCCChHHHHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHhCCCCC
Confidence 3444554 3446678985 345677766544333222211111223456788444444444433 3578999
Q ss_pred EEEec
Q 011347 434 FVICQ 438 (488)
Q Consensus 434 LVIGG 438 (488)
+||-.
T Consensus 95 ~lv~n 99 (252)
T 3f1l_A 95 GVLHN 99 (252)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99854
No 359
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=34.36 E-value=1e+02 Score=30.25 Aligned_cols=82 Identities=7% Similarity=0.016 Sum_probs=48.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccC-hhhHHHhhhccCC
Q 011347 354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALT-TKKFESLIHKLGS 431 (488)
Q Consensus 354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~-~~~Ie~l~~~~g~ 431 (488)
..-+|||+=||.|.+...+-+..-.. .++.+|+ +......+......+.. ...++.+|+.+.. + + .+.
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~------p~~ 248 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEV-EVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVP--F------PTG 248 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTC-EEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCC--C------CCC
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCC-EEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCC--C------CCC
Confidence 55789999999999999997743222 3678999 77666666544322111 1224456665431 0 1 036
Q ss_pred ccEEEecCCCCCcc
Q 011347 432 IDFVICQNSVPQIP 445 (488)
Q Consensus 432 ~DLVIGGpPCQ~FS 445 (488)
+|+|+-..-...++
T Consensus 249 ~D~v~~~~vlh~~~ 262 (363)
T 3dp7_A 249 FDAVWMSQFLDCFS 262 (363)
T ss_dssp CSEEEEESCSTTSC
T ss_pred cCEEEEechhhhCC
Confidence 78777665544443
No 360
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=33.89 E-value=48 Score=32.16 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=35.8
Q ss_pred HHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccCh--hhHHHhhhccCCccEEEe
Q 011347 369 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT--KKFESLIHKLGSIDFVIC 437 (488)
Q Consensus 369 slGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~--~~Ie~l~~~~g~~DLVIG 437 (488)
...|-+.|.+ |+.++.++...+.... ..+. ....+..||++... .-+++...++|.+|++|-
T Consensus 46 A~~la~~Ga~---V~i~~r~~~~l~~~~~---~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVN 109 (273)
T 4fgs_A 46 AKRFVAEGAR---VFITGRRKDVLDAAIA---EIGG-GAVGIQADSANLAELDRLYEKVKAEAGRIDVLFV 109 (273)
T ss_dssp HHHHHHTTCE---EEEEESCHHHHHHHHH---HHCT-TCEEEECCTTCHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred HHHHHHCCCE---EEEEECCHHHHHHHHH---HcCC-CeEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 5567899986 4557787765443322 1111 23345678876542 112333446899999984
No 361
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=33.14 E-value=85 Score=28.32 Aligned_cols=76 Identities=18% Similarity=0.294 Sum_probs=40.0
Q ss_pred cCCCCChhH----HHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhh----hccCCc
Q 011347 361 VFSGIGGAE----VTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI----HKLGSI 432 (488)
Q Consensus 361 LFSGiGGls----lGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~----~~~g~~ 432 (488)
+..|.||+- ..|.+.|.+ |+.++.++.....+.............++..|+..-+.+.+..++ ..+|.+
T Consensus 19 ITGas~gIG~~ia~~l~~~G~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~g~i 95 (247)
T 3i1j_A 19 VTGAARGIGAAAARAYAAHGAS---VVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHEFGRL 95 (247)
T ss_dssp ESSTTSHHHHHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHHHSCC
T ss_pred EeCCCChHHHHHHHHHHHCCCE---EEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHhCCCC
Confidence 344555543 445678975 445677766544433322222222333445566433444444433 356899
Q ss_pred cEEEecC
Q 011347 433 DFVICQN 439 (488)
Q Consensus 433 DLVIGGp 439 (488)
|+||-..
T Consensus 96 d~lv~nA 102 (247)
T 3i1j_A 96 DGLLHNA 102 (247)
T ss_dssp SEEEECC
T ss_pred CEEEECC
Confidence 9999543
No 362
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=32.25 E-value=73 Score=29.27 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=34.2
Q ss_pred HHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHH----hhhccCCccEEEecC
Q 011347 371 TLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES----LIHKLGSIDFVICQN 439 (488)
Q Consensus 371 GL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~----l~~~~g~~DLVIGGp 439 (488)
.|.+.|.+ |+.++.+.........-..........++..|+++.. .++. ....++.+|+||-..
T Consensus 42 ~l~~~G~~---V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~--~v~~~~~~~~~~~g~id~li~~A 109 (266)
T 3o38_A 42 RALLEGAD---VVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTE--AVDALITQTVEKAGRLDVLVNNA 109 (266)
T ss_dssp HHHHTTCE---EEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHH--HHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHCCCE---EEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHH--HHHHHHHHHHHHhCCCcEEEECC
Confidence 35578975 4456776654333322222221123335567887543 3333 334568999998643
No 363
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=30.54 E-value=63 Score=30.00 Aligned_cols=75 Identities=16% Similarity=0.159 Sum_probs=38.6
Q ss_pred CCCCChhH----HHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccCh--hhHHHhhhccCCccEE
Q 011347 362 FSGIGGAE----VTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT--KKFESLIHKLGSIDFV 435 (488)
Q Consensus 362 FSGiGGls----lGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~--~~Ie~l~~~~g~~DLV 435 (488)
--|.||+- ..|.+.|.+ |+.++.++....................+..||++... .-++.....+|++|+|
T Consensus 16 TGas~gIG~aia~~l~~~G~~---V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l 92 (262)
T 3pk0_A 16 TGGTKGIGRGIATVFARAGAN---VAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFGGIDVV 92 (262)
T ss_dssp TTCSSHHHHHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHSCCSEE
T ss_pred ECCCcHHHHHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 34455543 345678985 34567776654433322222111123345678876432 1123333467899999
Q ss_pred EecC
Q 011347 436 ICQN 439 (488)
Q Consensus 436 IGGp 439 (488)
|-..
T Consensus 93 vnnA 96 (262)
T 3pk0_A 93 CANA 96 (262)
T ss_dssp EECC
T ss_pred EECC
Confidence 8543
No 364
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=29.99 E-value=86 Score=28.56 Aligned_cols=65 Identities=20% Similarity=0.166 Sum_probs=34.6
Q ss_pred HHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccCh--hhHHHhhhccCCccEEEecC
Q 011347 370 VTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT--KKFESLIHKLGSIDFVICQN 439 (488)
Q Consensus 370 lGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~--~~Ie~l~~~~g~~DLVIGGp 439 (488)
..|.+.|.++ +.++.++.....++....... ...++..|+++... .-++.+...+|.+|+||-..
T Consensus 34 ~~l~~~G~~V---~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA 100 (271)
T 3ek2_A 34 KACKREGAEL---AFTYVGDRFKDRITEFAAEFG--SELVFPCDVADDAQIDALFASLKTHWDSLDGLVHSI 100 (271)
T ss_dssp HHHHHTTCEE---EEEESSGGGHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred HHHHHcCCCE---EEEecchhhHHHHHHHHHHcC--CcEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 4456789753 445555444444443322221 23456688876442 11223334578999998544
No 365
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=29.19 E-value=1.3e+02 Score=28.77 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=33.6
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhh
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 401 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~ 401 (488)
....+|||+=||.|.+...+.+..-..+ ++.+|+ +......+.....
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~~~ 214 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHEDLS-GTVLDL-QGPASAAHRRFLD 214 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCTTCE-EEEEEC-HHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCCCCe-EEEecC-HHHHHHHHHhhhh
Confidence 3457899999999999998877532233 567899 7776666655443
No 366
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=28.53 E-value=82 Score=29.44 Aligned_cols=64 Identities=13% Similarity=0.105 Sum_probs=34.0
Q ss_pred hHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHh----hhccCCccEEEecC
Q 011347 368 AEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL----IHKLGSIDFVICQN 439 (488)
Q Consensus 368 lslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l----~~~~g~~DLVIGGp 439 (488)
+...|.+.|.++ +.++.+. ....++...... ....++..|+++.. .++.+ ...++.+|+||-..
T Consensus 44 ia~~l~~~G~~V---~~~~r~~-~~~~~~~l~~~~--~~~~~~~~Dl~~~~--~v~~~~~~~~~~~g~id~li~nA 111 (280)
T 3nrc_A 44 IAKAMHREGAEL---AFTYVGQ-FKDRVEKLCAEF--NPAAVLPCDVISDQ--EIKDLFVELGKVWDGLDAIVHSI 111 (280)
T ss_dssp HHHHHHHTTCEE---EEEECTT-CHHHHHHHHGGG--CCSEEEECCTTCHH--HHHHHHHHHHHHCSSCCEEEECC
T ss_pred HHHHHHHcCCEE---EEeeCch-HHHHHHHHHHhc--CCceEEEeecCCHH--HHHHHHHHHHHHcCCCCEEEECC
Confidence 355667889863 4455554 222233221121 12335668887543 34333 34578999999544
No 367
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=28.28 E-value=1.4e+02 Score=24.63 Aligned_cols=66 Identities=24% Similarity=0.304 Sum_probs=40.2
Q ss_pred cCCCCChhH----HHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEEE
Q 011347 361 VFSGIGGAE----VTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI 436 (488)
Q Consensus 361 LFSGiGGls----lGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVI 436 (488)
+..|+|.+- ..|.+.|++ |+.+|.++...+.++. .+..++.+|+++. +.++.. ...++|+|+
T Consensus 10 ~I~G~G~iG~~la~~L~~~g~~---V~~id~~~~~~~~~~~-------~~~~~~~gd~~~~--~~l~~~--~~~~~d~vi 75 (141)
T 3llv_A 10 IVIGSEAAGVGLVRELTAAGKK---VLAVDKSKEKIELLED-------EGFDAVIADPTDE--SFYRSL--DLEGVSAVL 75 (141)
T ss_dssp EEECCSHHHHHHHHHHHHTTCC---EEEEESCHHHHHHHHH-------TTCEEEECCTTCH--HHHHHS--CCTTCSEEE
T ss_pred EEECCCHHHHHHHHHHHHCCCe---EEEEECCHHHHHHHHH-------CCCcEEECCCCCH--HHHHhC--CcccCCEEE
Confidence 346877543 345678986 4568999987665542 1333566787642 233321 235789999
Q ss_pred ecCC
Q 011347 437 CQNS 440 (488)
Q Consensus 437 GGpP 440 (488)
-..|
T Consensus 76 ~~~~ 79 (141)
T 3llv_A 76 ITGS 79 (141)
T ss_dssp ECCS
T ss_pred EecC
Confidence 8777
No 368
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=28.26 E-value=73 Score=29.62 Aligned_cols=67 Identities=9% Similarity=0.072 Sum_probs=35.5
Q ss_pred HHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccCh--hhHHHhhhccCCccEEEecC
Q 011347 370 VTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT--KKFESLIHKLGSIDFVICQN 439 (488)
Q Consensus 370 lGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~--~~Ie~l~~~~g~~DLVIGGp 439 (488)
..|.+.|.+ |+.++.++....................+..||++... .-++.+...+|.+|+||-..
T Consensus 38 ~~l~~~G~~---V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA 106 (266)
T 4egf_A 38 RAFAAAGAR---LVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAFGGLDVLVNNA 106 (266)
T ss_dssp HHHHHTTCE---EEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHHTSCSEEEEEC
T ss_pred HHHHHCCCE---EEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 446688975 44566676544333221111011123345678887653 12233344679999998543
No 369
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=27.83 E-value=1e+02 Score=28.47 Aligned_cols=67 Identities=12% Similarity=0.103 Sum_probs=36.0
Q ss_pred HHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccCh--hhHHHhhhccCCccEEEecC
Q 011347 369 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT--KKFESLIHKLGSIDFVICQN 439 (488)
Q Consensus 369 slGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~--~~Ie~l~~~~g~~DLVIGGp 439 (488)
...|.+.|.+ |+.++.++.....+..-.... ......+..||++... +-++++...+|.+|+||-..
T Consensus 28 a~~l~~~G~~---V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA 96 (264)
T 3ucx_A 28 ARRCAEQGAD---LVLAARTVERLEDVAKQVTDT-GRRALSVGTDITDDAQVAHLVDETMKAYGRVDVVINNA 96 (264)
T ss_dssp HHHHHHTTCE---EEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTTCHHHHHHHHHHHHHHTSCCSEEEECC
T ss_pred HHHHHHCcCE---EEEEeCCHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence 3456688986 345677766544433322222 1123345678876432 11233334679999998543
No 370
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=27.59 E-value=81 Score=29.95 Aligned_cols=81 Identities=9% Similarity=0.083 Sum_probs=49.2
Q ss_pred CcccccCCCC---ChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChh----hHHHhh
Q 011347 356 LTMLSVFSGI---GGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK----KFESLI 426 (488)
Q Consensus 356 itVLDLFSGi---GGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~----~Ie~l~ 426 (488)
-+||||=||. |-+...+.+. |. -|+++|+++......+..... .....++.+|+.+...- .+...+
T Consensus 79 ~~vLDlGcG~pt~G~~~~~~~~~~p~~---~v~~vD~sp~~l~~Ar~~~~~--~~~v~~~~~D~~~~~~~~~~~~~~~~~ 153 (274)
T 2qe6_A 79 SQFLDLGSGLPTVQNTHEVAQSVNPDA---RVVYVDIDPMVLTHGRALLAK--DPNTAVFTADVRDPEYILNHPDVRRMI 153 (274)
T ss_dssp CEEEEETCCSCCSSCHHHHHHHHCTTC---EEEEEESSHHHHHHHHHHHTT--CTTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred CEEEEECCCCCCCChHHHHHHHhCCCC---EEEEEECChHHHHHHHHhcCC--CCCeEEEEeeCCCchhhhccchhhccC
Confidence 5899999999 8877666654 43 368899999887766654321 12234567888764310 000111
Q ss_pred hccCCccEEEecCCCC
Q 011347 427 HKLGSIDFVICQNSVP 442 (488)
Q Consensus 427 ~~~g~~DLVIGGpPCQ 442 (488)
.++.+|+|+...=.+
T Consensus 154 -d~~~~d~v~~~~vlh 168 (274)
T 2qe6_A 154 -DFSRPAAIMLVGMLH 168 (274)
T ss_dssp -CTTSCCEEEETTTGG
T ss_pred -CCCCCEEEEEechhh
Confidence 134789888655333
No 371
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=27.21 E-value=1.3e+02 Score=29.77 Aligned_cols=79 Identities=11% Similarity=0.149 Sum_probs=51.3
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhc-----CCCCCcceeccccccChhhHHHhh
Q 011347 353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS-----GQTGELVQIEDIQALTTKKFESLI 426 (488)
Q Consensus 353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~-----n~~g~lv~~~DI~~L~~~~Ie~l~ 426 (488)
|+.-+||=+=.|.||....+.+. + ++-+..||||+.-.+..+.|+... +.+...++.+|-.+.-.+
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~--v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~------ 153 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKN--VESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ------ 153 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTT--CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSC------
T ss_pred CCCCeEEEECCCchHHHHHHHHcCC--cceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhh------
Confidence 55677887777777776555443 4 345778999999999998887431 122333566776544211
Q ss_pred hccCCccEEEecCC
Q 011347 427 HKLGSIDFVICQNS 440 (488)
Q Consensus 427 ~~~g~~DLVIGGpP 440 (488)
....+|+||--.+
T Consensus 154 -~~~~yDvIi~D~~ 166 (294)
T 3o4f_A 154 -TSQTFDVIISDCT 166 (294)
T ss_dssp -SSCCEEEEEESCC
T ss_pred -ccccCCEEEEeCC
Confidence 2357999997654
No 372
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=26.93 E-value=22 Score=35.34 Aligned_cols=24 Identities=13% Similarity=0.009 Sum_probs=19.9
Q ss_pred cCCCCCcccccCCCCChhHHHHHH
Q 011347 351 MFPGGLTMLSVFSGIGGAEVTLHR 374 (488)
Q Consensus 351 ~fp~~itVLDLFSGiGGlslGL~~ 374 (488)
++..+.+||||=|+-||-+.-..+
T Consensus 70 likpg~~VVDLGaAPGGWSQvAa~ 93 (269)
T 2px2_A 70 FVQPIGKVVDLGCGRGGWSYYAAT 93 (269)
T ss_dssp SCCCCEEEEEETCTTSHHHHHHTT
T ss_pred CCCCCCEEEEcCCCCCHHHHHHhh
Confidence 566789999999999999965544
No 373
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=26.49 E-value=59 Score=31.12 Aligned_cols=75 Identities=13% Similarity=0.173 Sum_probs=37.6
Q ss_pred CCCCChh----HHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccCh--hhHHHhhhccCCccEE
Q 011347 362 FSGIGGA----EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT--KKFESLIHKLGSIDFV 435 (488)
Q Consensus 362 FSGiGGl----slGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~--~~Ie~l~~~~g~~DLV 435 (488)
--|.||+ ...|.+.|.++ +.++.++........-....+......+..||++... +-++.....+|.+|+|
T Consensus 47 TGas~GIG~aia~~la~~G~~V---~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l 123 (293)
T 3rih_A 47 TGGTKGIGRGIATVFARAGANV---AVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFGALDVV 123 (293)
T ss_dssp TTTTSHHHHHHHHHHHHTTCEE---EEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred eCCCcHHHHHHHHHHHHCCCEE---EEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 3444554 34456889853 4456665543333222222111123345678875432 1123333467999999
Q ss_pred EecC
Q 011347 436 ICQN 439 (488)
Q Consensus 436 IGGp 439 (488)
|-..
T Consensus 124 vnnA 127 (293)
T 3rih_A 124 CANA 127 (293)
T ss_dssp EECC
T ss_pred EECC
Confidence 8543
No 374
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}
Probab=26.23 E-value=93 Score=28.82 Aligned_cols=65 Identities=15% Similarity=0.107 Sum_probs=35.8
Q ss_pred HHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcC-CCCCcceeccccccChhhHHHhhhccCCccEEEecC
Q 011347 370 VTLHRLGIKLKGVISIETSETNRRILKRWWESSG-QTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQN 439 (488)
Q Consensus 370 lGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n-~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGp 439 (488)
..|.+.|.+ |+.++.++.............. ......+..|+++ .+.+..++.+++.+|+||-..
T Consensus 28 ~~l~~~G~~---V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~g~id~lv~nA 93 (267)
T 3t4x_A 28 TSLVAEGAN---VLINGRREENVNETIKEIRAQYPDAILQPVVADLGT--EQGCQDVIEKYPKVDILINNL 93 (267)
T ss_dssp HHHHHTTCE---EEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTS--HHHHHHHHHHCCCCSEEEECC
T ss_pred HHHHHCCCE---EEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCC--HHHHHHHHHhcCCCCEEEECC
Confidence 445688975 3456777654332222111111 1112234567764 445667777889999998543
No 375
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=26.15 E-value=86 Score=29.03 Aligned_cols=65 Identities=11% Similarity=0.061 Sum_probs=35.3
Q ss_pred HHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhh-cCCCCCcceeccccccChhhHHH----hhhccCCccEEEecC
Q 011347 370 VTLHRLGIKLKGVISIETSETNRRILKRWWES-SGQTGELVQIEDIQALTTKKFES----LIHKLGSIDFVICQN 439 (488)
Q Consensus 370 lGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~-~n~~g~lv~~~DI~~L~~~~Ie~----l~~~~g~~DLVIGGp 439 (488)
..|.+.|.+ |+.++.++........-... ........+..|+++.. .+.. ....+|.+|+||-..
T Consensus 26 ~~l~~~G~~---V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~--~v~~~~~~~~~~~g~id~lvnnA 95 (265)
T 3lf2_A 26 ELLLEAGAA---VAFCARDGERLRAAESALRQRFPGARLFASVCDVLDAL--QVRAFAEACERTLGCASILVNNA 95 (265)
T ss_dssp HHHHHTTCE---EEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHH--HHHHHHHHHHHHHCSCSEEEECC
T ss_pred HHHHHCCCE---EEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHH--HHHHHHHHHHHHcCCCCEEEECC
Confidence 446678975 44567776654433332222 11112334557887643 3333 334579999998644
No 376
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*
Probab=26.01 E-value=97 Score=29.38 Aligned_cols=65 Identities=23% Similarity=0.253 Sum_probs=35.9
Q ss_pred hHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHh----hhccCCccEEEecC
Q 011347 368 AEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL----IHKLGSIDFVICQN 439 (488)
Q Consensus 368 lslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l----~~~~g~~DLVIGGp 439 (488)
+...|-+.|.+ |+.++.++.....++....... ....+..||++.. .++.+ ...+|.+|+||-..
T Consensus 48 ia~~la~~G~~---V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~--~v~~~~~~~~~~~g~iD~lVnnA 116 (296)
T 3k31_A 48 IAKAVCAQGAE---VALTYLSETFKKRVDPLAESLG--VKLTVPCDVSDAE--SVDNMFKVLAEEWGSLDFVVHAV 116 (296)
T ss_dssp HHHHHHHTTCE---EEEEESSGGGHHHHHHHHHHHT--CCEEEECCTTCHH--HHHHHHHHHHHHHSCCSEEEECC
T ss_pred HHHHHHHCCCE---EEEEeCChHHHHHHHHHHHhcC--CeEEEEcCCCCHH--HHHHHHHHHHHHcCCCCEEEECC
Confidence 34556788986 3456666544444433222221 2234567887643 33333 34569999999543
No 377
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=25.60 E-value=57 Score=34.15 Aligned_cols=128 Identities=11% Similarity=0.168 Sum_probs=66.7
Q ss_pred ChhhHHHHhcCCCCCccccCCChHHHH-HhhhhhcccCc--------chh----hhcc---ccccCCCCCcccccCCCCC
Q 011347 303 DPEHIELILGYPSNHTQAAGNSLTARL-ESLRHCFQTDT--------LGY----HLSV---LKSMFPGGLTMLSVFSGIG 366 (488)
Q Consensus 303 e~~E~E~i~GfP~~~T~~~~l~~teR~-k~Lgnsfqvdt--------i~~----~lsv---LK~~fp~~itVLDLFSGiG 366 (488)
....||+-||-|.-.+...|+..|++. +.|+..+..+. +.. .... .+.++ .+-+|+ ||.|..
T Consensus 265 ~A~~Le~~~GiP~i~~~p~Gi~~T~~~L~~ia~~~g~~~i~~~~e~~i~~er~~~~~al~~~~~~l-~GKrv~-i~~~~~ 342 (483)
T 3pdi_A 265 VARKLQETYGTPWFEGSFYGITDTSQALRDFARLLDDPDLTARTEALIAREEAKVRAALEPWRARL-EGKRVL-LYTGGV 342 (483)
T ss_dssp HHHHHHHHHCCCEEEECSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCEEE-EECSSS
T ss_pred HHHHHHHHhCCCEeecCCCCHHHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHHHHHHHHh-cCCEEE-EECCCc
Confidence 367899999999777666688777554 77777765421 111 1111 12223 234443 455544
Q ss_pred ---hhHHHHHHcCCeeeeEEEeeC-CHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEEEecCCCC
Q 011347 367 ---GAEVTLHRLGIKLKGVISIET-SETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP 442 (488)
Q Consensus 367 ---GlslGL~~aGi~~k~vvsVEi-d~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ 442 (488)
++...|..+|+++.. ++... ++.....++.. . ..+. ++..| .+..++++++.. .++||+|||....
T Consensus 343 ~~~~l~~~L~ElGmevv~-~gt~~~~~~d~~~~~~~---l-~~~~-~i~~d---~d~~el~~~i~~-~~pDL~ig~~~~~ 412 (483)
T 3pdi_A 343 KSWSVVSALQDLGMKVVA-TGTKKSTEEDKARIREL---M-GDDV-KMLDE---GNARVLLKTVDE-YQADILIAGGRNM 412 (483)
T ss_dssp CHHHHHHHHHHHTCEEEE-ECBSSSCHHHHHHHHHH---S-CSSC-CBCCS---CSHHHHHHHHHH-TTCSEEECCGGGH
T ss_pred hHHHHHHHHHHCCCEEEE-EecCCCCHHHHHHHHHh---c-CCCC-EEEeC---CCHHHHHHHHHh-cCCCEEEECCchh
Confidence 455668899997532 22332 22211112111 1 1122 22222 244455554432 4789999987655
No 378
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=25.16 E-value=1e+02 Score=28.53 Aligned_cols=75 Identities=17% Similarity=0.262 Sum_probs=37.7
Q ss_pred cCCCCChhH----HHHHHcCCeeeeEEEeeCCHHHHH-HHHHHhhhcCCCCCcceecccccc-Ch-hhH-HHhhhccCCc
Q 011347 361 VFSGIGGAE----VTLHRLGIKLKGVISIETSETNRR-ILKRWWESSGQTGELVQIEDIQAL-TT-KKF-ESLIHKLGSI 432 (488)
Q Consensus 361 LFSGiGGls----lGL~~aGi~~k~vvsVEid~~a~~-t~~~~~~~~n~~g~lv~~~DI~~L-~~-~~I-e~l~~~~g~~ 432 (488)
+..|.||+- ..|.+.|.+ |+.+..++.... +.+.. ...+.....++..|+.+. .. +.+ +.+...++.+
T Consensus 17 ITGas~GIG~~~a~~L~~~G~~---V~~~~r~~~~~~~~~~~l-~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~g~i 92 (311)
T 3o26_A 17 VTGGNKGIGFEICKQLSSNGIM---VVLTCRDVTKGHEAVEKL-KNSNHENVVFHQLDVTDPIATMSSLADFIKTHFGKL 92 (311)
T ss_dssp ESSCSSHHHHHHHHHHHHTTCE---EEEEESCHHHHHHHHHHH-HTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHHSSC
T ss_pred EecCCchHHHHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHH-HhcCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCC
Confidence 344455543 335577975 445666665432 22222 222212233456788875 21 122 2233356899
Q ss_pred cEEEecC
Q 011347 433 DFVICQN 439 (488)
Q Consensus 433 DLVIGGp 439 (488)
|+||-..
T Consensus 93 D~lv~nA 99 (311)
T 3o26_A 93 DILVNNA 99 (311)
T ss_dssp CEEEECC
T ss_pred CEEEECC
Confidence 9998654
No 379
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=24.88 E-value=33 Score=26.18 Aligned_cols=33 Identities=27% Similarity=0.267 Sum_probs=19.7
Q ss_pred hhhHHhcCCCHHHHH--HHHHHhCCCCchhhhhhhhh
Q 011347 4 TLQLLEMGFSENQVS--LAIEKFGSKTPISELADKIF 38 (488)
Q Consensus 4 ~~~l~~mgf~~~e~~--~ai~~~g~~~~~~~l~d~i~ 38 (488)
+.+++.|||++|..- ..++..+ ..|....|.|-
T Consensus 14 l~qMl~MGF~negGWLt~LL~~k~--gDI~~aLD~lq 48 (52)
T 1q02_A 14 LSQMLSMGFSDEGGWLTRLLQTKN--YDIGAALDTIQ 48 (52)
T ss_dssp HHHHHTTTCCCTTSHHHHHHHHTT--TCHHHHHHHHT
T ss_pred HHHHHHcCCCccccHHHHHHHHcc--CCHHHHHHHhh
Confidence 467899999998763 3333332 23555555543
No 380
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=24.70 E-value=60 Score=29.96 Aligned_cols=35 Identities=23% Similarity=0.418 Sum_probs=26.8
Q ss_pred hhHHhc-------CCCHHHHHHHHHHhCCCCchh-------hhhhhhhh
Q 011347 5 LQLLEM-------GFSENQVSLAIEKFGSKTPIS-------ELADKIFS 39 (488)
Q Consensus 5 ~~l~~m-------gf~~~e~~~ai~~~g~~~~~~-------~l~d~i~a 39 (488)
+.|++| |||.||+-.||.-||...|+. .|.|.|.+
T Consensus 15 l~lV~liREaEk~GfspEEV~aAl~~~g~~~P~~WLk~ewp~ll~~V~~ 63 (162)
T 4dbg_B 15 LQLVSMIREGEAAGACPEEIFSALQYSGTEVPLQWLRSELPYVLEMVAE 63 (162)
T ss_dssp HHHHHTTSTTCCSCCCHHHHHHHHHHHTCCCCHHHHHHHSCSHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Confidence 667766 999999999997778887875 34566654
No 381
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=24.23 E-value=87 Score=28.89 Aligned_cols=66 Identities=9% Similarity=0.155 Sum_probs=35.7
Q ss_pred HHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccCh--hhHHHhhhccCCccEEEecC
Q 011347 370 VTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT--KKFESLIHKLGSIDFVICQN 439 (488)
Q Consensus 370 lGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~--~~Ie~l~~~~g~~DLVIGGp 439 (488)
..|.+.|.+ |+.++.++.....+..-....+ .....+..|+++... .-++.....+|.+|+||-..
T Consensus 30 ~~l~~~G~~---V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nA 97 (256)
T 3gaf_A 30 GTFAKAGAS---VVVTDLKSEGAEAVAAAIRQAG-GKAIGLECNVTDEQHREAVIKAALDQFGKITVLVNNA 97 (256)
T ss_dssp HHHHHHTCE---EEEEESSHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHCCCE---EEEEeCCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 446678986 4456777665444333222221 123345678876542 11233334678999998543
No 382
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=24.14 E-value=63 Score=31.23 Aligned_cols=43 Identities=16% Similarity=0.242 Sum_probs=31.1
Q ss_pred CCCcccccCCCCCh----hHHHHHHc-CC---eeeeEEEeeCCHHHHHHHHH
Q 011347 354 GGLTMLSVFSGIGG----AEVTLHRL-GI---KLKGVISIETSETNRRILKR 397 (488)
Q Consensus 354 ~~itVLDLFSGiGG----lslGL~~a-Gi---~~k~vvsVEid~~a~~t~~~ 397 (488)
.+++|+|+=||.|- +.+.|... |- .. -|+++|||+.+.+..+.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~-~I~atDis~~~L~~Ar~ 155 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRW-KVFASDIDTEVLEKARS 155 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSE-EEEEEESCHHHHHHHHH
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCe-EEEEEECCHHHHHHHHh
Confidence 45899999999997 45555543 41 12 37899999998877665
No 383
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=24.12 E-value=96 Score=29.17 Aligned_cols=65 Identities=12% Similarity=0.173 Sum_probs=32.4
Q ss_pred HHHHHcCCeeeeEEEeeC-CHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHH----hhhccCCccEEEecC
Q 011347 370 VTLHRLGIKLKGVISIET-SETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES----LIHKLGSIDFVICQN 439 (488)
Q Consensus 370 lGL~~aGi~~k~vvsVEi-d~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~----l~~~~g~~DLVIGGp 439 (488)
..|.+.|.++ +.++. ++...+.+..-...........+..||++.. .++. ....+|++|+||-..
T Consensus 43 ~~la~~G~~V---~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~--~v~~~~~~~~~~~g~iD~lv~nA 112 (281)
T 3v2h_A 43 RTLAKAGANI---VLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPS--EIADMMAMVADRFGGADILVNNA 112 (281)
T ss_dssp HHHHHTTCEE---EEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHH--HHHHHHHHHHHHTSSCSEEEECC
T ss_pred HHHHHCCCEE---EEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHH--HHHHHHHHHHHHCCCCCEEEECC
Confidence 4466889853 34555 4333222222121111112234557887543 3333 334679999998543
No 384
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=23.43 E-value=1.2e+02 Score=28.56 Aligned_cols=63 Identities=13% Similarity=0.182 Sum_probs=35.0
Q ss_pred HHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccCh--hhHHHhhhccCCccEEEec
Q 011347 369 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT--KKFESLIHKLGSIDFVICQ 438 (488)
Q Consensus 369 slGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~--~~Ie~l~~~~g~~DLVIGG 438 (488)
...|.+.|.+ |+.++.++.....+..-. + .....+..||++... .-++.....+|.+|+||-.
T Consensus 46 a~~la~~G~~---V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnn 110 (277)
T 3gvc_A 46 ARRLADEGCH---VLCADIDGDAADAAATKI---G-CGAAACRVDVSDEQQIIAMVDACVAAFGGVDKLVAN 110 (277)
T ss_dssp HHHHHHTTCE---EEEEESSHHHHHHHHHHH---C-SSCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEEC
T ss_pred HHHHHHCCCE---EEEEeCCHHHHHHHHHHc---C-CcceEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 3456688985 455677766544433221 1 122345678876542 1123333467899999854
No 385
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=23.12 E-value=99 Score=28.94 Aligned_cols=66 Identities=18% Similarity=0.290 Sum_probs=35.1
Q ss_pred HHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccCh--hhHHHhhhccCCccEEEecC
Q 011347 370 VTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT--KKFESLIHKLGSIDFVICQN 439 (488)
Q Consensus 370 lGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~--~~Ie~l~~~~g~~DLVIGGp 439 (488)
..|.+.|.+ |+.++.++.....+......... ....+..|+++... .-+++....+|.+|+||-..
T Consensus 46 ~~la~~G~~---V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA 113 (270)
T 3ftp_A 46 LELARRGAM---VIGTATTEAGAEGIGAAFKQAGL-EGRGAVLNVNDATAVDALVESTLKEFGALNVLVNNA 113 (270)
T ss_dssp HHHHHTTCE---EEEEESSHHHHHHHHHHHHHHTC-CCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHCCCE---EEEEeCCHHHHHHHHHHHHhcCC-cEEEEEEeCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 446688985 34567776654433332222211 22345578875432 11233334678999999543
No 386
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Probab=22.88 E-value=1.3e+02 Score=28.37 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=33.8
Q ss_pred HHHHHcCCeeeeEEEee-CCHHHHHHHHHHhhhcCCCCCcceeccccccCh---------------hhHHH----hhhcc
Q 011347 370 VTLHRLGIKLKGVISIE-TSETNRRILKRWWESSGQTGELVQIEDIQALTT---------------KKFES----LIHKL 429 (488)
Q Consensus 370 lGL~~aGi~~k~vvsVE-id~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~---------------~~Ie~----l~~~~ 429 (488)
..|.+.|.+ |+.++ .++.....+..-..........++..|+++... +.+.. ....+
T Consensus 27 ~~la~~G~~---V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 103 (291)
T 1e7w_A 27 EGLHAEGYA---VCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHW 103 (291)
T ss_dssp HHHHHTTCE---EEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCe---EEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCcccccccccccccccchHHHHHHHHHHHHHhc
Confidence 345678975 34456 665543322221110111123345678887650 03333 33457
Q ss_pred CCccEEEecC
Q 011347 430 GSIDFVICQN 439 (488)
Q Consensus 430 g~~DLVIGGp 439 (488)
|.+|+||-..
T Consensus 104 g~iD~lvnnA 113 (291)
T 1e7w_A 104 GRCDVLVNNA 113 (291)
T ss_dssp SCCCEEEECC
T ss_pred CCCCEEEECC
Confidence 8999998544
No 387
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=22.85 E-value=1.7e+02 Score=30.84 Aligned_cols=130 Identities=14% Similarity=0.163 Sum_probs=67.1
Q ss_pred hhhHHHHhcCCCCCccc-cCCChHHHH-HhhhhhcccCcch-------hhhcccc---ccCCCCCcccccCCCCChhHH-
Q 011347 304 PEHIELILGYPSNHTQA-AGNSLTARL-ESLRHCFQTDTLG-------YHLSVLK---SMFPGGLTMLSVFSGIGGAEV- 370 (488)
Q Consensus 304 ~~E~E~i~GfP~~~T~~-~~l~~teR~-k~Lgnsfqvdti~-------~~lsvLK---~~fp~~itVLDLFSGiGGlsl- 370 (488)
...||+-+|-|.-+... .|+..|++. +.|+..+..+.-. ..+..+. .++ .+-+|+ +|.+ ....+
T Consensus 298 A~~Le~r~GiP~i~~~~PiG~~~T~~~L~~la~~~g~~~~~~i~~er~~~~~~l~d~~~~l-~Gkrv~-i~gd-~~~~~~ 374 (519)
T 1qgu_B 298 KKVVQEMWNQPATEVAIPLGLAATDELLMTVSQLSGKPIADALTLERGRLVDMMLDSHTWL-HGKKFG-LYGD-PDFVMG 374 (519)
T ss_dssp HHHHHHTSCCCCCCCCCCBSHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH-TTCEEE-EESC-HHHHHH
T ss_pred HHHHHHHcCCCeEecCCCcchHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHc-CCCEEE-EECC-chHHHH
Confidence 57889999999887754 677777554 7777666544211 1111221 122 233332 3332 33333
Q ss_pred ---HHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccCCccEEEecCCC
Q 011347 371 ---TLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV 441 (488)
Q Consensus 371 ---GL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPC 441 (488)
.|..+|+.+..++.-..++.-.+.++......+. .+..+..+ .+..++++++... ++|||||++..
T Consensus 375 la~~L~ElGm~vv~v~~~~~~~~~~~~~~~ll~~~~~~~~~~v~~~----~d~~~l~~~i~~~-~pDLiig~~~~ 444 (519)
T 1qgu_B 375 LTRFLLELGCEPTVILSHNANKRWQKAMNKMLDASPYGRDSEVFIN----CDLWHFRSLMFTR-QPDFMIGNSYG 444 (519)
T ss_dssp HHHHHHHTTCEEEEEEETTCCHHHHHHHHHHHHHSTTCTTCEEEES----CCHHHHHHHHHHH-CCSEEEECGGG
T ss_pred HHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHHhcCCCCCCEEEEC----CCHHHHHHHHhhc-CCCEEEECcch
Confidence 4678999876555555555544444433322211 12222221 2334444444332 58999998643
No 388
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Probab=22.30 E-value=71 Score=29.89 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=37.1
Q ss_pred cCCCCChhH----HHHHHcCCeeeeEEEeeCCHHHHH-HHHHHhhhcCCCCCcceeccccccCh--hhHHHhhhccCCcc
Q 011347 361 VFSGIGGAE----VTLHRLGIKLKGVISIETSETNRR-ILKRWWESSGQTGELVQIEDIQALTT--KKFESLIHKLGSID 433 (488)
Q Consensus 361 LFSGiGGls----lGL~~aGi~~k~vvsVEid~~a~~-t~~~~~~~~n~~g~lv~~~DI~~L~~--~~Ie~l~~~~g~~D 433 (488)
+--|.||+- ..|.+.|.+ |+.++.+..... ..+...... ......+..||++... .-++.....+|.+|
T Consensus 32 VTGas~GIG~aia~~l~~~G~~---V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id 107 (277)
T 4fc7_A 32 ITGGGSGIGFRIAEIFMRHGCH---TVIASRSLPRVLTAARKLAGAT-GRRCLPLSMDVRAPPAVMAAVDQALKEFGRID 107 (277)
T ss_dssp EETTTSHHHHHHHHHHHTTTCE---EEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred EeCCCchHHHHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 334455543 345678875 344566654332 222211111 1123345678876432 11233334579999
Q ss_pred EEEecC
Q 011347 434 FVICQN 439 (488)
Q Consensus 434 LVIGGp 439 (488)
+||-..
T Consensus 108 ~lv~nA 113 (277)
T 4fc7_A 108 ILINCA 113 (277)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 998543
No 389
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=22.21 E-value=1.1e+02 Score=28.26 Aligned_cols=67 Identities=21% Similarity=0.256 Sum_probs=34.8
Q ss_pred HHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcC-C-CCCcceeccccccCh--hhHHHhhhccCCccEEEecC
Q 011347 370 VTLHRLGIKLKGVISIETSETNRRILKRWWESSG-Q-TGELVQIEDIQALTT--KKFESLIHKLGSIDFVICQN 439 (488)
Q Consensus 370 lGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n-~-~g~lv~~~DI~~L~~--~~Ie~l~~~~g~~DLVIGGp 439 (488)
..|.+.|.+ |+.++.++........-....+ . ....++..|+++... .-++.....+|.+|+||-..
T Consensus 25 ~~l~~~G~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvnnA 95 (250)
T 3nyw_A 25 AGLATDGYR---VVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAA 95 (250)
T ss_dssp HHHHHHTCE---EEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHHHCCEEEEEECC
T ss_pred HHHHHCCCE---EEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 445678975 3456777654433322111111 1 223345678876542 12233334579999998543
No 390
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Probab=21.91 E-value=80 Score=29.78 Aligned_cols=76 Identities=12% Similarity=0.068 Sum_probs=38.0
Q ss_pred cCCCCChhH----HHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccCh--hhHHHhhhccCCccE
Q 011347 361 VFSGIGGAE----VTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT--KKFESLIHKLGSIDF 434 (488)
Q Consensus 361 LFSGiGGls----lGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~--~~Ie~l~~~~g~~DL 434 (488)
+..|.||+- ..|.+.|.+ |+.++.++........-...........+..|+++.+. +-++.....+|.+|+
T Consensus 38 VTGas~GIG~aia~~la~~G~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~ 114 (281)
T 4dry_A 38 VTGGGTGVGRGIAQALSAEGYS---VVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFARLDL 114 (281)
T ss_dssp ETTTTSHHHHHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHSCCSE
T ss_pred EeCCCCHHHHHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 344455543 345678975 45567776544333221111111111345678876532 112233345799999
Q ss_pred EEecC
Q 011347 435 VICQN 439 (488)
Q Consensus 435 VIGGp 439 (488)
||-..
T Consensus 115 lvnnA 119 (281)
T 4dry_A 115 LVNNA 119 (281)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 98543
No 391
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=21.36 E-value=52 Score=32.76 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=26.7
Q ss_pred CCCCcccccCCCCChhHH-HHHHcCCeeeeEEEeeCCHH
Q 011347 353 PGGLTMLSVFSGIGGAEV-TLHRLGIKLKGVISIETSET 390 (488)
Q Consensus 353 p~~itVLDLFSGiGGlsl-GL~~aGi~~k~vvsVEid~~ 390 (488)
..+.+||||-||-||.+. +.++.|. ..|.++++...
T Consensus 89 k~~~~VLDLGaAPGGWsQvAa~~~gv--~sV~GvdvG~d 125 (282)
T 3gcz_A 89 KPTGIVVDLGCGRGGWSYYAASLKNV--KKVMAFTLGVQ 125 (282)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTSTTE--EEEEEECCCCT
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCC--CeeeeEEeccC
Confidence 455689999999999997 6666663 44667777643
No 392
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=21.13 E-value=1.2e+02 Score=28.47 Aligned_cols=75 Identities=15% Similarity=0.121 Sum_probs=39.0
Q ss_pred cCCCCChh----HHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccCh--hhHHHhhhccCCccE
Q 011347 361 VFSGIGGA----EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT--KKFESLIHKLGSIDF 434 (488)
Q Consensus 361 LFSGiGGl----slGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~--~~Ie~l~~~~g~~DL 434 (488)
+--|.||+ ...|.+.|.+ |+.++.++............. ......+..||++... +-++.....+|.+|+
T Consensus 29 VTGas~GIG~aia~~la~~G~~---V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~ 104 (279)
T 3sju_A 29 VTGVSSGIGLAVARTLAARGIA---VYGCARDAKNVSAAVDGLRAA-GHDVDGSSCDVTSTDEVHAAVAAAVERFGPIGI 104 (279)
T ss_dssp EESTTSHHHHHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHTT-TCCEEEEECCTTCHHHHHHHHHHHHHHHCSCCE
T ss_pred EeCCCCHHHHHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHHHcCCCcE
Confidence 33445554 3445678975 455677766544333222221 1122345578875432 112333345799999
Q ss_pred EEecC
Q 011347 435 VICQN 439 (488)
Q Consensus 435 VIGGp 439 (488)
||-..
T Consensus 105 lv~nA 109 (279)
T 3sju_A 105 LVNSA 109 (279)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 98543
No 393
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=20.86 E-value=1.1e+02 Score=28.15 Aligned_cols=64 Identities=17% Similarity=0.188 Sum_probs=35.2
Q ss_pred HHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHH----hhhccCCccEEEecC
Q 011347 370 VTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES----LIHKLGSIDFVICQN 439 (488)
Q Consensus 370 lGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~----l~~~~g~~DLVIGGp 439 (488)
..|.+.|.+ |+.++.++........-.... ......+..|+++.. .++. ....+|.+|+||-..
T Consensus 24 ~~l~~~G~~---V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~--~v~~~~~~~~~~~g~id~lv~nA 91 (257)
T 3imf_A 24 TRFAKEGAR---VVITGRTKEKLEEAKLEIEQF-PGQILTVQMDVRNTD--DIQKMIEQIDEKFGRIDILINNA 91 (257)
T ss_dssp HHHHHTTCE---EEEEESCHHHHHHHHHHHCCS-TTCEEEEECCTTCHH--HHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHCCCE---EEEEeCCHHHHHHHHHHHHhc-CCcEEEEEccCCCHH--HHHHHHHHHHHHcCCCCEEEECC
Confidence 445678975 445677776544443322211 112234567887643 3333 334578999998543
No 394
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=20.60 E-value=1e+02 Score=28.98 Aligned_cols=73 Identities=14% Similarity=0.240 Sum_probs=37.2
Q ss_pred CCCChh----HHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccCh--hhHHHhhhccCCccEEE
Q 011347 363 SGIGGA----EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT--KKFESLIHKLGSIDFVI 436 (488)
Q Consensus 363 SGiGGl----slGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~--~~Ie~l~~~~g~~DLVI 436 (488)
-|.||+ ...|.+.|.++ +.++.++...+.+..-....+ .....+..||++... +-+++....+|++|+||
T Consensus 39 Gas~GIG~aia~~la~~G~~V---~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lv 114 (276)
T 3r1i_A 39 GASTGIGKKVALAYAEAGAQV---AVAARHSDALQVVADEIAGVG-GKALPIRCDVTQPDQVRGMLDQMTGELGGIDIAV 114 (276)
T ss_dssp STTSHHHHHHHHHHHHTTCEE---EEEESSGGGGHHHHHHHHHTT-CCCEEEECCTTCHHHHHHHHHHHHHHHSCCSEEE
T ss_pred CCCCHHHHHHHHHHHHCCCEE---EEEeCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 444554 34456789863 445555544333332222221 123345678876542 11233334578999998
Q ss_pred ecC
Q 011347 437 CQN 439 (488)
Q Consensus 437 GGp 439 (488)
-..
T Consensus 115 nnA 117 (276)
T 3r1i_A 115 CNA 117 (276)
T ss_dssp ECC
T ss_pred ECC
Confidence 543
No 395
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*
Probab=20.58 E-value=1.4e+02 Score=28.25 Aligned_cols=64 Identities=14% Similarity=0.207 Sum_probs=35.4
Q ss_pred HHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHH----hhhccCCccEEEecC
Q 011347 369 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES----LIHKLGSIDFVICQN 439 (488)
Q Consensus 369 slGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~----l~~~~g~~DLVIGGp 439 (488)
...|.+.|.+ |+.++.++.....++..-.... ...++..||++.. .++. ....+|.+|+||-..
T Consensus 50 a~~la~~G~~---V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~--~v~~~~~~~~~~~g~iD~lVnnA 117 (293)
T 3grk_A 50 AKAAREAGAE---LAFTYQGDALKKRVEPLAEELG--AFVAGHCDVADAA--SIDAVFETLEKKWGKLDFLVHAI 117 (293)
T ss_dssp HHHHHHTTCE---EEEEECSHHHHHHHHHHHHHHT--CEEEEECCTTCHH--HHHHHHHHHHHHTSCCSEEEECC
T ss_pred HHHHHHCCCE---EEEEcCCHHHHHHHHHHHHhcC--CceEEECCCCCHH--HHHHHHHHHHHhcCCCCEEEECC
Confidence 4556788976 3445666554444433222211 2234567887643 3333 334579999998543
No 396
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=20.47 E-value=1.2e+02 Score=28.64 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=37.9
Q ss_pred CCCCChhH----HHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccCh--hhHHHhhhccCCccEE
Q 011347 362 FSGIGGAE----VTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT--KKFESLIHKLGSIDFV 435 (488)
Q Consensus 362 FSGiGGls----lGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~--~~Ie~l~~~~g~~DLV 435 (488)
--|.||+- ..|.+.|.+ |+.++.+......+..-.... ......+..|+++... .-++.....+|.+|+|
T Consensus 34 TGas~GIG~aia~~la~~G~~---V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l 109 (283)
T 3v8b_A 34 TGAGSGIGRATALALAADGVT---VGALGRTRTEVEEVADEIVGA-GGQAIALEADVSDELQMRNAVRDLVLKFGHLDIV 109 (283)
T ss_dssp ESCSSHHHHHHHHHHHHTTCE---EEEEESSHHHHHHHHHHHTTT-TCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred ECCCCHHHHHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHHHhc-CCcEEEEEccCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 34445543 346678975 345677766544333322111 1122345678875432 1123333457999999
Q ss_pred Eec
Q 011347 436 ICQ 438 (488)
Q Consensus 436 IGG 438 (488)
|-.
T Consensus 110 Vnn 112 (283)
T 3v8b_A 110 VAN 112 (283)
T ss_dssp EEC
T ss_pred EEC
Confidence 854
No 397
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=20.31 E-value=1e+02 Score=28.91 Aligned_cols=64 Identities=14% Similarity=0.178 Sum_probs=34.5
Q ss_pred HHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHH----hhhccCCccEEEecC
Q 011347 370 VTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES----LIHKLGSIDFVICQN 439 (488)
Q Consensus 370 lGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~----l~~~~g~~DLVIGGp 439 (488)
..|.+.|.+ |+.++.++.....+..-.... ......+..|+++.. .++. ....+|.+|+||-..
T Consensus 22 ~~la~~G~~---V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dv~d~~--~v~~~~~~~~~~~g~iD~lVnnA 89 (264)
T 3tfo_A 22 RELGVAGAK---ILLGARRQARIEAIATEIRDA-GGTALAQVLDVTDRH--SVAAFAQAAVDTWGRIDVLVNNA 89 (264)
T ss_dssp HHHHHTTCE---EEEEESSHHHHHHHHHHHHHT-TCEEEEEECCTTCHH--HHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHCCCE---EEEEECCHHHHHHHHHHHHhc-CCcEEEEEcCCCCHH--HHHHHHHHHHHHcCCCCEEEECC
Confidence 445678976 345677766544433322222 112234457887543 3333 334578999999643
No 398
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Probab=20.27 E-value=1e+02 Score=29.14 Aligned_cols=64 Identities=14% Similarity=0.155 Sum_probs=35.2
Q ss_pred HHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHH----hhhccCCccEEEecC
Q 011347 370 VTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES----LIHKLGSIDFVICQN 439 (488)
Q Consensus 370 lGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~----l~~~~g~~DLVIGGp 439 (488)
..|.+.|.+ |+.++.++.....+..-.... ......+..||++.. .+.. ....+|.+|+||-..
T Consensus 26 ~~la~~G~~---V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~--~v~~~~~~~~~~~g~iD~lvnnA 93 (280)
T 3tox_A 26 LLFAREGAK---VVVTARNGNALAELTDEIAGG-GGEAAALAGDVGDEA--LHEALVELAVRRFGGLDTAFNNA 93 (280)
T ss_dssp HHHHHTTCE---EEECCSCHHHHHHHHHHHTTT-TCCEEECCCCTTCHH--HHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHCCCE---EEEEECCHHHHHHHHHHHHhc-CCcEEEEECCCCCHH--HHHHHHHHHHHHcCCCCEEEECC
Confidence 445678975 455777776544443322211 112234557887643 3333 334578999998543
No 399
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=20.25 E-value=1.1e+02 Score=28.18 Aligned_cols=65 Identities=12% Similarity=0.156 Sum_probs=32.2
Q ss_pred HHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccCh--hhHHHhhhccCCccEEEe
Q 011347 370 VTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT--KKFESLIHKLGSIDFVIC 437 (488)
Q Consensus 370 lGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~--~~Ie~l~~~~g~~DLVIG 437 (488)
..|.+.|.++ ++....++........-.... ......+..||++... .-+++....+|.+|+||-
T Consensus 26 ~~la~~G~~V--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~ 92 (259)
T 3edm_A 26 IRFAQEGANV--VLTYNGAAEGAATAVAEIEKL-GRSALAIKADLTNAAEVEAAISAAADKFGEIHGLVH 92 (259)
T ss_dssp HHHHHTTCEE--EEEECSSCHHHHHHHHHHHTT-TSCCEEEECCTTCHHHHHHHHHHHHHHHCSEEEEEE
T ss_pred HHHHHCCCEE--EEEcCCCHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 4456789864 443354444332222222221 1223345678876432 112333345799999984
Done!