Query 011350
Match_columns 488
No_of_seqs 188 out of 1303
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 06:18:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011350.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011350hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vr4_D V-type sodium ATPase su 100.0 6E-123 2E-127 975.2 44.9 455 19-485 10-464 (465)
2 3gqb_B V-type ATP synthase bet 100.0 4E-122 1E-126 968.8 40.8 458 18-483 5-464 (464)
3 2c61_A A-type ATP synthase non 100.0 1E-121 5E-126 970.0 42.8 459 14-485 7-465 (469)
4 3oaa_A ATP synthase subunit al 100.0 2E-111 7E-116 893.8 40.7 421 17-468 24-458 (513)
5 2r9v_A ATP synthase subunit al 100.0 1E-110 4E-115 890.5 41.1 439 11-483 29-471 (515)
6 2qe7_A ATP synthase subunit al 100.0 1E-110 3E-115 890.7 40.3 437 12-483 18-458 (502)
7 2ck3_A ATP synthase subunit al 100.0 3E-110 1E-114 888.5 40.1 445 12-483 18-466 (510)
8 1fx0_B ATP synthase beta chain 100.0 8E-110 3E-114 883.0 38.3 421 20-463 19-463 (498)
9 1fx0_A ATP synthase alpha chai 100.0 2E-110 8E-115 888.7 32.6 437 12-483 19-459 (507)
10 2ck3_D ATP synthase subunit be 100.0 2E-108 7E-113 869.4 44.2 430 20-473 13-464 (482)
11 3vr4_A V-type sodium ATPase ca 100.0 2E-108 7E-113 880.2 33.4 422 18-463 7-530 (600)
12 3gqb_A V-type ATP synthase alp 100.0 2E-108 7E-113 877.2 29.7 419 21-463 3-517 (578)
13 3mfy_A V-type ATP synthase alp 100.0 4E-109 1E-113 882.5 16.5 420 20-463 3-525 (588)
14 1sky_E F1-ATPase, F1-ATP synth 100.0 1E-102 4E-107 827.5 43.8 429 20-476 2-451 (473)
15 2dpy_A FLII, flagellum-specifi 100.0 2.9E-73 9.8E-78 602.2 34.3 423 15-464 4-437 (438)
16 3l0o_A Transcription terminati 100.0 8.2E-75 2.8E-79 597.4 18.3 320 77-431 96-418 (427)
17 3ice_A Transcription terminati 100.0 1.2E-70 4.2E-75 567.3 18.0 268 130-426 140-412 (422)
18 2obl_A ESCN; ATPase, hydrolase 100.0 6.5E-68 2.2E-72 545.8 28.1 343 92-462 2-346 (347)
19 4a74_A DNA repair and recombin 97.2 0.00054 1.9E-08 63.8 7.5 43 142-184 5-49 (231)
20 1n0w_A DNA repair protein RAD5 97.0 0.0023 7.7E-08 60.1 9.2 43 142-184 4-48 (243)
21 2ehv_A Hypothetical protein PH 96.7 0.00053 1.8E-08 64.7 2.5 42 142-183 10-53 (251)
22 1v5w_A DMC1, meiotic recombina 96.6 0.0079 2.7E-07 60.9 10.5 44 141-184 101-146 (343)
23 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.00072 2.5E-08 62.8 2.3 43 142-184 3-47 (235)
24 3io5_A Recombination and repai 96.6 0.0026 9E-08 64.4 6.5 112 142-282 5-124 (333)
25 3hr8_A Protein RECA; alpha and 96.5 0.0019 6.5E-08 66.2 5.2 44 141-184 39-85 (356)
26 2zr9_A Protein RECA, recombina 96.5 0.003 1E-07 64.4 6.0 44 141-184 39-85 (349)
27 2z43_A DNA repair and recombin 96.5 0.0086 2.9E-07 59.9 9.3 44 141-184 86-131 (324)
28 2cvh_A DNA repair and recombin 96.4 0.0009 3.1E-08 61.9 1.8 39 144-182 2-42 (220)
29 2i1q_A DNA repair and recombin 96.3 0.013 4.4E-07 58.3 9.3 44 141-184 77-122 (322)
30 1pzn_A RAD51, DNA repair and r 96.3 0.0069 2.4E-07 61.6 7.4 44 141-184 110-155 (349)
31 3lda_A DNA repair protein RAD5 96.2 0.013 4.3E-07 61.0 9.3 44 141-184 157-202 (400)
32 1u94_A RECA protein, recombina 96.1 0.0065 2.2E-07 62.1 6.0 44 141-184 41-87 (356)
33 1xp8_A RECA protein, recombina 96.0 0.0065 2.2E-07 62.4 5.7 44 141-184 52-98 (366)
34 2zts_A Putative uncharacterize 95.8 0.0039 1.3E-07 58.6 2.8 42 143-184 11-54 (251)
35 2dr3_A UPF0273 protein PH0284; 95.7 0.0036 1.2E-07 58.8 2.1 43 142-184 3-47 (247)
36 3bh0_A DNAB-like replicative h 95.5 0.045 1.5E-06 54.5 9.3 43 142-184 49-92 (315)
37 3cmw_A Protein RECA, recombina 95.4 0.013 4.3E-07 70.9 5.6 116 139-285 10-128 (1706)
38 1nlf_A Regulatory protein REPA 95.3 0.0088 3E-07 58.2 3.3 47 138-184 7-54 (279)
39 1zp6_A Hypothetical protein AT 95.1 0.01 3.5E-07 53.7 2.9 30 154-183 3-32 (191)
40 1cr0_A DNA primase/helicase; R 95.1 0.0075 2.6E-07 59.1 2.1 42 143-184 16-59 (296)
41 3tr0_A Guanylate kinase, GMP k 95.0 0.012 4.2E-07 53.7 3.4 28 157-184 4-31 (205)
42 2v1u_A Cell division control p 95.0 0.078 2.7E-06 52.7 9.4 101 158-284 42-145 (387)
43 4eun_A Thermoresistant glucoki 94.9 0.015 5.3E-07 53.5 3.6 42 144-185 13-54 (200)
44 1znw_A Guanylate kinase, GMP k 94.9 0.014 4.8E-07 54.1 3.3 29 156-184 16-44 (207)
45 1z6g_A Guanylate kinase; struc 94.8 0.013 4.5E-07 55.1 2.9 29 155-183 18-46 (218)
46 3rlf_A Maltose/maltodextrin im 94.7 0.023 7.9E-07 58.7 4.7 37 147-183 15-52 (381)
47 3tif_A Uncharacterized ABC tra 94.6 0.018 6.1E-07 55.2 3.5 35 148-182 18-53 (235)
48 2qby_A CDC6 homolog 1, cell di 94.6 0.085 2.9E-06 52.3 8.6 100 158-283 43-142 (386)
49 2pcj_A ABC transporter, lipopr 94.5 0.019 6.5E-07 54.5 3.2 34 149-182 18-52 (224)
50 2cbz_A Multidrug resistance-as 94.4 0.021 7.2E-07 54.7 3.5 31 153-183 24-54 (237)
51 3cmu_A Protein RECA, recombina 94.4 0.036 1.2E-06 68.0 6.0 114 138-283 1402-1519(2050)
52 3c8u_A Fructokinase; YP_612366 94.3 0.022 7.5E-07 52.8 3.2 28 157-184 19-46 (208)
53 2j41_A Guanylate kinase; GMP, 94.3 0.023 7.9E-07 51.8 3.3 29 156-184 2-30 (207)
54 2ff7_A Alpha-hemolysin translo 94.3 0.023 7.9E-07 54.9 3.4 34 150-183 24-58 (247)
55 3tui_C Methionine import ATP-b 94.3 0.032 1.1E-06 57.3 4.6 35 148-182 41-76 (366)
56 1b0u_A Histidine permease; ABC 94.3 0.024 8.2E-07 55.2 3.5 34 149-182 20-54 (262)
57 4g1u_C Hemin import ATP-bindin 94.3 0.024 8.2E-07 55.4 3.5 35 148-182 24-59 (266)
58 2zu0_C Probable ATP-dependent 94.2 0.029 1E-06 54.7 4.0 35 148-182 33-68 (267)
59 2d2e_A SUFC protein; ABC-ATPas 94.2 0.029 9.9E-07 54.2 3.9 34 149-182 17-51 (250)
60 1vpl_A ABC transporter, ATP-bi 94.2 0.025 8.6E-07 55.0 3.5 34 149-182 29-63 (256)
61 1htw_A HI0065; nucleotide-bind 94.2 0.024 8E-07 51.1 3.1 30 155-184 28-57 (158)
62 2olj_A Amino acid ABC transpor 94.2 0.026 8.9E-07 55.1 3.5 34 149-182 38-72 (263)
63 3gfo_A Cobalt import ATP-bindi 94.2 0.026 8.8E-07 55.6 3.5 34 149-182 22-56 (275)
64 2pze_A Cystic fibrosis transme 94.2 0.027 9.2E-07 53.7 3.5 31 153-183 27-57 (229)
65 1mv5_A LMRA, multidrug resista 94.1 0.027 9.1E-07 54.1 3.5 31 153-183 21-51 (243)
66 1sgw_A Putative ABC transporte 94.1 0.025 8.5E-07 53.6 3.1 34 149-182 23-57 (214)
67 1ji0_A ABC transporter; ATP bi 94.1 0.027 9.3E-07 54.0 3.4 33 150-182 21-54 (240)
68 2ihy_A ABC transporter, ATP-bi 94.1 0.027 9.3E-07 55.5 3.5 34 149-182 35-69 (279)
69 1g6h_A High-affinity branched- 94.1 0.024 8.3E-07 54.9 3.1 34 149-182 21-55 (257)
70 3fvq_A Fe(3+) IONS import ATP- 94.1 0.029 9.9E-07 57.5 3.7 37 147-183 16-53 (359)
71 3ec2_A DNA replication protein 94.1 0.031 1.1E-06 50.3 3.6 29 156-184 34-62 (180)
72 2qi9_C Vitamin B12 import ATP- 94.0 0.029 9.9E-07 54.3 3.5 30 153-182 19-48 (249)
73 2ixe_A Antigen peptide transpo 94.0 0.028 9.7E-07 55.0 3.5 34 150-183 34-68 (271)
74 1w5s_A Origin recognition comp 94.0 0.17 5.7E-06 51.0 9.3 98 159-282 49-151 (412)
75 1kgd_A CASK, peripheral plasma 94.0 0.032 1.1E-06 50.6 3.5 26 159-184 4-29 (180)
76 1lvg_A Guanylate kinase, GMP k 94.0 0.025 8.4E-07 52.3 2.8 26 159-184 3-28 (198)
77 2ghi_A Transport protein; mult 94.0 0.03 1E-06 54.5 3.5 30 153-182 39-68 (260)
78 2nq2_C Hypothetical ABC transp 93.9 0.03 1E-06 54.3 3.4 34 150-183 20-54 (253)
79 2yz2_A Putative ABC transporte 93.9 0.03 1E-06 54.6 3.5 33 150-182 22-55 (266)
80 3lnc_A Guanylate kinase, GMP k 93.9 0.023 7.7E-07 53.5 2.4 29 155-183 22-51 (231)
81 2jeo_A Uridine-cytidine kinase 93.9 0.031 1E-06 53.3 3.3 31 155-185 20-50 (245)
82 1fnn_A CDC6P, cell division co 93.9 0.37 1.3E-05 47.9 11.5 92 159-281 41-137 (389)
83 1z47_A CYSA, putative ABC-tran 93.9 0.036 1.2E-06 56.7 3.9 34 150-183 30-64 (355)
84 2yyz_A Sugar ABC transporter, 93.8 0.037 1.3E-06 56.7 4.0 35 149-183 17-52 (359)
85 2it1_A 362AA long hypothetical 93.8 0.038 1.3E-06 56.7 4.0 35 149-183 17-52 (362)
86 1v43_A Sugar-binding transport 93.8 0.037 1.3E-06 56.9 4.0 35 149-183 25-60 (372)
87 4gp7_A Metallophosphoesterase; 93.8 0.036 1.2E-06 49.9 3.5 26 155-180 4-29 (171)
88 1g29_1 MALK, maltose transport 93.7 0.039 1.3E-06 56.7 3.9 35 149-183 17-52 (372)
89 2v9p_A Replication protein E1; 93.6 0.024 8.1E-07 56.8 2.1 33 152-184 118-150 (305)
90 3asz_A Uridine kinase; cytidin 93.6 0.034 1.2E-06 51.2 3.0 28 157-184 3-30 (211)
91 1tf7_A KAIC; homohexamer, hexa 93.6 0.024 8.3E-07 60.5 2.2 39 142-180 19-59 (525)
92 3cmu_A Protein RECA, recombina 93.6 0.062 2.1E-06 65.9 6.0 118 137-285 8-128 (2050)
93 2vhj_A Ntpase P4, P4; non- hyd 93.6 0.058 2E-06 54.6 4.8 44 140-183 102-146 (331)
94 3d31_A Sulfate/molybdate ABC t 93.4 0.033 1.1E-06 56.7 2.8 32 152-183 18-49 (348)
95 3gd7_A Fusion complex of cysti 93.3 0.048 1.6E-06 56.4 3.7 35 148-182 34-69 (390)
96 3vaa_A Shikimate kinase, SK; s 93.3 0.052 1.8E-06 49.8 3.6 31 155-185 20-50 (199)
97 2i3b_A HCR-ntpase, human cance 93.2 0.043 1.5E-06 50.8 3.0 25 160-184 1-25 (189)
98 2pjz_A Hypothetical protein ST 93.1 0.05 1.7E-06 53.1 3.4 32 150-182 20-52 (263)
99 2bbs_A Cystic fibrosis transme 93.1 0.046 1.6E-06 54.2 3.2 34 150-183 53-87 (290)
100 3b85_A Phosphate starvation-in 93.0 0.043 1.5E-06 51.6 2.8 27 157-183 19-45 (208)
101 1oxx_K GLCV, glucose, ABC tran 92.9 0.034 1.2E-06 56.7 2.0 34 150-183 20-54 (353)
102 3nh6_A ATP-binding cassette SU 92.9 0.033 1.1E-06 55.7 1.8 36 148-183 67-103 (306)
103 1kag_A SKI, shikimate kinase I 92.9 0.058 2E-06 47.8 3.2 27 159-185 3-29 (173)
104 1pui_A ENGB, probable GTP-bind 92.8 0.029 9.8E-07 51.2 1.1 32 149-181 16-47 (210)
105 2kjq_A DNAA-related protein; s 92.7 0.046 1.6E-06 48.4 2.3 26 159-184 35-60 (149)
106 1y63_A LMAJ004144AAA protein; 92.6 0.071 2.4E-06 48.3 3.6 30 156-185 6-36 (184)
107 3a00_A Guanylate kinase, GMP k 92.6 0.056 1.9E-06 49.1 2.8 25 160-184 1-25 (186)
108 1knq_A Gluconate kinase; ALFA/ 92.6 0.073 2.5E-06 47.4 3.5 28 158-185 6-33 (175)
109 1s96_A Guanylate kinase, GMP k 92.5 0.066 2.3E-06 50.7 3.3 28 157-184 13-40 (219)
110 3cmw_A Protein RECA, recombina 92.5 0.1 3.4E-06 63.2 5.5 45 141-185 361-408 (1706)
111 2r6a_A DNAB helicase, replicat 92.4 0.043 1.5E-06 57.4 2.0 43 142-184 184-227 (454)
112 3ney_A 55 kDa erythrocyte memb 92.4 0.078 2.7E-06 49.7 3.6 30 155-184 14-43 (197)
113 2qt1_A Nicotinamide riboside k 92.4 0.056 1.9E-06 49.7 2.6 29 155-183 16-44 (207)
114 3aez_A Pantothenate kinase; tr 92.3 0.069 2.4E-06 53.4 3.3 29 156-184 86-114 (312)
115 2eyu_A Twitching motility prot 92.3 0.052 1.8E-06 52.8 2.2 33 151-184 17-49 (261)
116 1ye8_A Protein THEP1, hypothet 92.2 0.075 2.6E-06 48.6 3.1 25 161-185 1-25 (178)
117 2onk_A Molybdate/tungstate ABC 92.2 0.094 3.2E-06 50.4 3.9 30 153-183 18-47 (240)
118 1t9h_A YLOQ, probable GTPase E 91.9 0.025 8.5E-07 56.7 -0.5 32 151-182 164-195 (307)
119 2yv5_A YJEQ protein; hydrolase 91.9 0.048 1.6E-06 54.1 1.5 32 150-181 155-186 (302)
120 3tau_A Guanylate kinase, GMP k 91.9 0.091 3.1E-06 48.7 3.3 27 158-184 6-32 (208)
121 2bdt_A BH3686; alpha-beta prot 91.8 0.082 2.8E-06 47.7 2.9 24 160-183 2-25 (189)
122 2qor_A Guanylate kinase; phosp 91.8 0.09 3.1E-06 48.4 3.2 28 157-184 9-36 (204)
123 1cke_A CK, MSSA, protein (cyti 91.8 0.11 3.6E-06 48.2 3.7 27 159-185 4-30 (227)
124 2bbw_A Adenylate kinase 4, AK4 91.8 0.1 3.5E-06 49.5 3.6 27 159-185 26-52 (246)
125 3cm0_A Adenylate kinase; ATP-b 91.7 0.095 3.3E-06 46.9 3.2 27 159-185 3-29 (186)
126 3sr0_A Adenylate kinase; phosp 91.7 1.3 4.5E-05 41.2 11.2 126 162-294 2-204 (206)
127 1sq5_A Pantothenate kinase; P- 91.6 0.088 3E-06 52.2 3.1 29 156-184 76-104 (308)
128 3uie_A Adenylyl-sulfate kinase 91.6 0.1 3.6E-06 47.8 3.4 27 158-184 23-49 (200)
129 1yqt_A RNAse L inhibitor; ATP- 91.5 0.1 3.6E-06 56.0 3.7 33 150-182 37-69 (538)
130 3b9q_A Chloroplast SRP recepto 91.3 0.11 3.8E-06 51.6 3.5 29 156-184 96-124 (302)
131 2q6t_A DNAB replication FORK h 91.3 0.064 2.2E-06 56.0 1.7 43 142-184 181-224 (444)
132 2qm8_A GTPase/ATPase; G protei 91.2 0.092 3.1E-06 52.9 2.7 30 154-183 49-78 (337)
133 1lw7_A Transcriptional regulat 91.2 0.084 2.9E-06 53.5 2.5 30 156-185 164-195 (365)
134 1l8q_A Chromosomal replication 91.2 0.25 8.5E-06 48.6 5.9 26 159-184 36-61 (324)
135 4e22_A Cytidylate kinase; P-lo 91.1 0.13 4.4E-06 49.3 3.6 28 158-185 25-52 (252)
136 3j16_B RLI1P; ribosome recycli 91.1 0.12 4E-06 56.5 3.7 33 150-182 93-125 (608)
137 3te6_A Regulatory protein SIR3 90.9 0.83 2.9E-05 45.8 9.5 98 157-282 42-145 (318)
138 3bgw_A DNAB-like replicative h 90.9 0.074 2.5E-06 55.8 1.8 44 142-185 178-222 (444)
139 2x8a_A Nuclear valosin-contain 90.8 0.12 3.9E-06 50.5 3.0 28 156-185 42-69 (274)
140 1rj9_A FTSY, signal recognitio 90.7 0.14 4.7E-06 51.0 3.5 27 158-184 100-126 (304)
141 1rz3_A Hypothetical protein rb 90.7 0.13 4.5E-06 47.2 3.2 28 156-183 18-45 (201)
142 4a1f_A DNAB helicase, replicat 90.7 0.082 2.8E-06 53.6 1.9 44 142-185 27-71 (338)
143 1ixz_A ATP-dependent metallopr 90.5 0.13 4.5E-06 48.7 3.0 28 156-185 47-74 (254)
144 2npi_A Protein CLP1; CLP1-PCF1 90.5 0.099 3.4E-06 55.2 2.3 30 155-184 133-162 (460)
145 1u0l_A Probable GTPase ENGC; p 90.3 0.076 2.6E-06 52.5 1.2 33 150-182 159-191 (301)
146 2wwf_A Thymidilate kinase, put 90.3 0.17 5.7E-06 46.2 3.4 29 157-185 7-35 (212)
147 3bk7_A ABC transporter ATP-bin 90.2 0.14 4.7E-06 56.0 3.2 33 150-182 107-139 (607)
148 3pvs_A Replication-associated 90.2 0.32 1.1E-05 50.9 5.9 27 159-185 49-75 (447)
149 2rcn_A Probable GTPase ENGC; Y 90.1 0.085 2.9E-06 54.0 1.4 31 152-182 207-237 (358)
150 1tf7_A KAIC; homohexamer, hexa 90.1 0.098 3.4E-06 55.8 1.9 43 142-184 261-305 (525)
151 2pez_A Bifunctional 3'-phospho 90.0 0.19 6.4E-06 45.0 3.4 26 159-184 4-29 (179)
152 2yhs_A FTSY, cell division pro 90.0 0.16 5.6E-06 54.1 3.5 30 155-184 288-317 (503)
153 2gj8_A MNME, tRNA modification 89.9 0.15 5.2E-06 45.2 2.7 25 159-183 3-27 (172)
154 2og2_A Putative signal recogni 89.9 0.18 6E-06 51.6 3.5 29 156-184 153-181 (359)
155 1yqt_A RNAse L inhibitor; ATP- 89.8 0.17 5.8E-06 54.4 3.5 28 156-183 308-335 (538)
156 3b5x_A Lipid A export ATP-bind 89.8 0.16 5.6E-06 54.8 3.3 31 153-183 362-392 (582)
157 1kht_A Adenylate kinase; phosp 89.8 0.19 6.5E-06 44.8 3.3 27 159-185 2-28 (192)
158 2z4s_A Chromosomal replication 89.7 0.5 1.7E-05 49.2 6.8 25 160-184 130-154 (440)
159 3kb2_A SPBC2 prophage-derived 89.6 0.2 6.8E-06 43.8 3.3 24 162-185 3-26 (173)
160 1nn5_A Similar to deoxythymidy 89.6 0.19 6.6E-06 45.8 3.3 30 156-185 5-34 (215)
161 3iij_A Coilin-interacting nucl 89.6 0.19 6.6E-06 44.8 3.2 28 158-185 9-36 (180)
162 2yl4_A ATP-binding cassette SU 89.5 0.16 5.4E-06 55.1 3.0 35 149-183 358-393 (595)
163 3b60_A Lipid A export ATP-bind 89.5 0.16 5.3E-06 55.0 2.9 34 150-183 358-392 (582)
164 3fb4_A Adenylate kinase; psych 89.4 0.21 7.1E-06 45.9 3.3 24 162-185 2-25 (216)
165 1zuh_A Shikimate kinase; alpha 89.3 0.23 7.9E-06 43.8 3.4 25 161-185 8-32 (168)
166 3ozx_A RNAse L inhibitor; ATP 89.2 0.17 5.9E-06 54.4 3.0 29 155-183 289-317 (538)
167 1iy2_A ATP-dependent metallopr 89.1 0.19 6.7E-06 48.4 3.0 27 156-184 71-97 (278)
168 2a5y_B CED-4; apoptosis; HET: 89.1 0.59 2E-05 49.8 7.1 22 161-182 153-174 (549)
169 3bk7_A ABC transporter ATP-bin 89.1 0.21 7E-06 54.6 3.5 28 156-183 378-405 (607)
170 2iw3_A Elongation factor 3A; a 89.1 0.22 7.7E-06 57.2 3.9 34 149-182 449-483 (986)
171 3dl0_A Adenylate kinase; phosp 89.0 0.22 7.5E-06 45.8 3.2 24 162-185 2-25 (216)
172 3qf4_B Uncharacterized ABC tra 88.9 0.18 6.3E-06 54.6 2.9 34 150-183 370-404 (598)
173 3nwj_A ATSK2; P loop, shikimat 88.8 0.23 7.7E-06 48.1 3.2 38 148-185 32-73 (250)
174 2if2_A Dephospho-COA kinase; a 88.8 0.21 7.2E-06 45.5 2.9 21 162-182 3-23 (204)
175 3h4m_A Proteasome-activating n 88.7 1.1 3.8E-05 42.7 8.1 28 158-185 49-76 (285)
176 3bos_A Putative DNA replicatio 88.6 0.27 9.3E-06 45.1 3.5 29 157-185 49-77 (242)
177 2plr_A DTMP kinase, probable t 88.6 0.28 9.6E-06 44.4 3.6 27 159-185 3-29 (213)
178 2c95_A Adenylate kinase 1; tra 88.5 0.27 9.2E-06 44.1 3.3 29 157-185 6-34 (196)
179 1zu4_A FTSY; GTPase, signal re 88.5 2.4 8.3E-05 42.2 10.7 30 155-184 100-129 (320)
180 3trf_A Shikimate kinase, SK; a 88.4 0.29 9.9E-06 43.7 3.5 26 160-185 5-30 (185)
181 2v54_A DTMP kinase, thymidylat 88.4 0.26 9.1E-06 44.5 3.3 26 159-184 3-28 (204)
182 1tev_A UMP-CMP kinase; ploop, 88.4 0.29 1E-05 43.6 3.5 26 160-185 3-28 (196)
183 2gza_A Type IV secretion syste 88.3 0.14 4.7E-06 52.1 1.4 30 155-184 170-199 (361)
184 1jbk_A CLPB protein; beta barr 88.2 0.31 1.1E-05 42.6 3.5 27 158-184 41-67 (195)
185 2qag_B Septin-6, protein NEDD5 88.2 0.21 7.2E-06 52.3 2.7 29 155-183 35-65 (427)
186 1qhx_A CPT, protein (chloramph 88.2 0.31 1.1E-05 43.1 3.5 26 160-185 3-28 (178)
187 2f9l_A RAB11B, member RAS onco 88.1 0.26 9.1E-06 44.5 3.0 22 162-183 7-28 (199)
188 4a82_A Cystic fibrosis transme 88.1 0.15 5.1E-06 55.1 1.6 35 149-183 355-390 (578)
189 3e70_C DPA, signal recognition 88.1 0.28 9.7E-06 49.3 3.5 28 157-184 126-153 (328)
190 1oix_A RAS-related protein RAB 88.1 0.23 7.8E-06 44.9 2.5 22 162-183 31-52 (191)
191 2vli_A Antibiotic resistance p 87.9 0.26 8.9E-06 43.8 2.8 27 159-185 4-30 (183)
192 2iyv_A Shikimate kinase, SK; t 87.9 0.28 9.5E-06 43.9 3.0 26 160-185 2-27 (184)
193 1zd8_A GTP:AMP phosphotransfer 87.9 0.29 9.8E-06 45.7 3.2 29 157-185 4-32 (227)
194 2bwj_A Adenylate kinase 5; pho 87.8 0.29 9.8E-06 44.0 3.1 29 157-185 9-37 (199)
195 3pfi_A Holliday junction ATP-d 87.8 0.7 2.4E-05 45.4 6.2 25 161-185 56-80 (338)
196 2vp4_A Deoxynucleoside kinase; 87.7 0.15 5.1E-06 48.0 1.1 28 156-183 16-43 (230)
197 2rhm_A Putative kinase; P-loop 87.7 0.33 1.1E-05 43.4 3.4 28 158-185 3-30 (193)
198 2jaq_A Deoxyguanosine kinase; 87.6 0.33 1.1E-05 43.6 3.4 24 162-185 2-25 (205)
199 1odf_A YGR205W, hypothetical 3 87.5 0.31 1.1E-05 48.1 3.3 28 157-184 28-55 (290)
200 2ewv_A Twitching motility prot 87.4 0.31 1.1E-05 49.7 3.4 28 157-184 133-160 (372)
201 1aky_A Adenylate kinase; ATP:A 87.3 0.37 1.3E-05 44.5 3.6 27 159-185 3-29 (220)
202 3sop_A Neuronal-specific septi 87.3 0.27 9.2E-06 47.9 2.7 23 162-184 4-26 (270)
203 1q3t_A Cytidylate kinase; nucl 87.3 0.36 1.2E-05 45.3 3.6 28 158-185 14-41 (236)
204 3qf4_A ABC transporter, ATP-bi 87.3 0.2 7E-06 54.2 2.0 34 150-183 358-392 (587)
205 3kta_A Chromosome segregation 87.2 0.4 1.4E-05 42.7 3.6 36 147-183 11-49 (182)
206 1jjv_A Dephospho-COA kinase; P 87.2 0.3 1E-05 44.6 2.8 21 162-182 4-24 (206)
207 1z6t_A APAF-1, apoptotic prote 87.1 0.43 1.5E-05 50.9 4.4 25 159-183 146-170 (591)
208 2wji_A Ferrous iron transport 87.0 0.32 1.1E-05 42.5 2.9 22 161-182 4-25 (165)
209 3ozx_A RNAse L inhibitor; ATP 87.0 0.26 9E-06 52.9 2.7 28 155-182 20-47 (538)
210 3bs4_A Uncharacterized protein 87.0 1.2 4.1E-05 43.4 7.1 59 144-218 3-63 (260)
211 1ni3_A YCHF GTPase, YCHF GTP-b 87.0 0.31 1E-05 50.4 3.0 28 156-183 16-43 (392)
212 2cdn_A Adenylate kinase; phosp 86.9 0.41 1.4E-05 43.5 3.6 28 158-185 18-45 (201)
213 3t61_A Gluconokinase; PSI-biol 86.9 0.36 1.2E-05 43.9 3.2 25 161-185 19-43 (202)
214 2yvu_A Probable adenylyl-sulfa 86.8 0.42 1.4E-05 42.9 3.5 29 157-185 10-38 (186)
215 3tlx_A Adenylate kinase 2; str 86.6 0.42 1.4E-05 45.4 3.6 28 158-185 27-54 (243)
216 3be4_A Adenylate kinase; malar 86.6 0.41 1.4E-05 44.4 3.5 27 159-185 4-30 (217)
217 1ukz_A Uridylate kinase; trans 86.5 0.41 1.4E-05 43.4 3.4 27 159-185 14-40 (203)
218 1q57_A DNA primase/helicase; d 86.5 0.16 5.4E-06 53.7 0.5 44 142-185 222-267 (503)
219 1svm_A Large T antigen; AAA+ f 86.4 0.35 1.2E-05 49.7 3.1 30 155-184 164-193 (377)
220 1c9k_A COBU, adenosylcobinamid 86.3 0.28 9.7E-06 45.2 2.2 85 163-285 2-89 (180)
221 3lw7_A Adenylate kinase relate 86.3 0.38 1.3E-05 41.7 2.9 23 162-185 3-25 (179)
222 3eie_A Vacuolar protein sortin 86.3 1 3.6E-05 44.3 6.4 25 161-185 52-76 (322)
223 2pt7_A CAG-ALFA; ATPase, prote 86.2 0.16 5.5E-06 51.0 0.4 30 155-184 166-195 (330)
224 2p65_A Hypothetical protein PF 86.1 0.35 1.2E-05 42.3 2.6 27 158-184 41-67 (187)
225 3jvv_A Twitching mobility prot 86.0 0.41 1.4E-05 48.7 3.4 28 157-184 120-147 (356)
226 4f4c_A Multidrug resistance pr 85.9 0.31 1E-05 57.9 2.7 36 149-184 1093-1129(1321)
227 2zej_A Dardarin, leucine-rich 85.9 0.34 1.2E-05 43.2 2.4 21 162-182 4-24 (184)
228 1via_A Shikimate kinase; struc 85.8 0.42 1.4E-05 42.4 3.0 24 162-185 6-29 (175)
229 2qp9_X Vacuolar protein sortin 85.8 2.2 7.5E-05 42.8 8.7 24 162-185 86-109 (355)
230 1z2a_A RAS-related protein RAB 85.7 0.39 1.3E-05 41.2 2.7 22 162-183 7-28 (168)
231 2pt5_A Shikimate kinase, SK; a 85.7 0.49 1.7E-05 41.4 3.3 24 162-185 2-25 (168)
232 2iw3_A Elongation factor 3A; a 85.7 0.29 1E-05 56.3 2.3 31 152-182 691-721 (986)
233 1kao_A RAP2A; GTP-binding prot 85.7 0.41 1.4E-05 40.8 2.8 22 162-183 5-26 (167)
234 2z0h_A DTMP kinase, thymidylat 85.6 0.43 1.5E-05 42.8 3.0 23 162-184 2-24 (197)
235 1tq4_A IIGP1, interferon-induc 85.6 0.28 9.6E-06 51.0 1.9 21 162-182 71-91 (413)
236 3r20_A Cytidylate kinase; stru 85.5 0.48 1.6E-05 45.4 3.4 25 161-185 10-34 (233)
237 3dm5_A SRP54, signal recogniti 85.5 3 0.0001 43.7 9.6 26 159-184 99-124 (443)
238 2wjg_A FEOB, ferrous iron tran 85.5 0.43 1.5E-05 42.2 2.9 23 161-183 8-30 (188)
239 1m7g_A Adenylylsulfate kinase; 85.4 0.51 1.8E-05 43.4 3.5 28 157-184 22-49 (211)
240 2dyk_A GTP-binding protein; GT 85.4 0.48 1.6E-05 40.4 3.1 22 162-183 3-24 (161)
241 2ce2_X GTPase HRAS; signaling 85.3 0.4 1.4E-05 40.8 2.5 22 162-183 5-26 (166)
242 1ly1_A Polynucleotide kinase; 85.3 0.45 1.5E-05 41.9 2.9 21 162-182 4-24 (181)
243 1r8s_A ADP-ribosylation factor 85.2 0.51 1.8E-05 40.5 3.2 22 162-183 2-23 (164)
244 1nks_A Adenylate kinase; therm 85.2 0.47 1.6E-05 42.2 3.0 24 162-185 3-26 (194)
245 4eaq_A DTMP kinase, thymidylat 85.1 0.54 1.8E-05 44.4 3.5 30 156-185 22-51 (229)
246 1e6c_A Shikimate kinase; phosp 85.1 0.49 1.7E-05 41.5 3.0 25 161-185 3-27 (173)
247 4b4t_J 26S protease regulatory 85.0 1.1 3.9E-05 46.4 6.2 23 163-185 185-207 (405)
248 3cf0_A Transitional endoplasmi 85.0 0.54 1.8E-05 46.1 3.6 28 158-185 47-74 (301)
249 1u8z_A RAS-related protein RAL 84.9 0.46 1.6E-05 40.6 2.7 22 162-183 6-27 (168)
250 3ux8_A Excinuclease ABC, A sub 84.9 0.32 1.1E-05 53.4 2.0 32 150-181 337-369 (670)
251 2pbr_A DTMP kinase, thymidylat 84.9 0.52 1.8E-05 42.0 3.2 23 162-184 2-24 (195)
252 2nzj_A GTP-binding protein REM 84.9 0.49 1.7E-05 41.0 2.9 21 162-182 6-26 (175)
253 1z08_A RAS-related protein RAB 84.7 0.47 1.6E-05 40.9 2.7 22 162-183 8-29 (170)
254 3euj_A Chromosome partition pr 84.7 0.6 2E-05 49.6 3.9 31 153-184 23-53 (483)
255 1ek0_A Protein (GTP-binding pr 84.5 0.49 1.7E-05 40.6 2.7 22 162-183 5-26 (170)
256 1qf9_A UMP/CMP kinase, protein 84.4 0.59 2E-05 41.5 3.3 26 160-185 6-31 (194)
257 1uf9_A TT1252 protein; P-loop, 84.4 0.55 1.9E-05 42.3 3.1 24 160-183 8-31 (203)
258 1e4v_A Adenylate kinase; trans 84.4 0.54 1.8E-05 43.3 3.1 24 162-185 2-25 (214)
259 4b4t_L 26S protease subunit RP 84.3 1.3 4.6E-05 46.2 6.4 24 162-185 217-240 (437)
260 2p5t_B PEZT; postsegregational 84.3 0.47 1.6E-05 45.3 2.7 30 156-185 28-57 (253)
261 2w58_A DNAI, primosome compone 84.2 0.62 2.1E-05 42.2 3.4 24 161-184 55-78 (202)
262 1zak_A Adenylate kinase; ATP:A 84.2 0.54 1.8E-05 43.5 3.0 27 159-185 4-30 (222)
263 4b4t_K 26S protease regulatory 84.2 1 3.5E-05 47.1 5.4 23 163-185 209-231 (428)
264 2grj_A Dephospho-COA kinase; T 84.2 0.58 2E-05 43.2 3.2 25 161-185 13-37 (192)
265 3ux8_A Excinuclease ABC, A sub 84.1 0.48 1.7E-05 51.9 3.0 28 150-177 33-61 (670)
266 3d8b_A Fidgetin-like protein 1 84.1 3.7 0.00013 41.1 9.4 26 160-185 117-142 (357)
267 1c1y_A RAS-related protein RAP 84.1 0.59 2E-05 40.0 3.0 22 162-183 5-26 (167)
268 1wms_A RAB-9, RAB9, RAS-relate 84.1 0.53 1.8E-05 40.9 2.8 22 162-183 9-30 (177)
269 1ak2_A Adenylate kinase isoenz 84.0 0.68 2.3E-05 43.3 3.7 27 159-185 15-41 (233)
270 1in4_A RUVB, holliday junction 84.0 0.52 1.8E-05 46.9 3.0 25 161-185 52-76 (334)
271 2ged_A SR-beta, signal recogni 83.9 0.53 1.8E-05 41.8 2.8 23 161-183 49-71 (193)
272 1r2q_A RAS-related protein RAB 83.9 0.54 1.8E-05 40.3 2.7 22 162-183 8-29 (170)
273 1z0j_A RAB-22, RAS-related pro 83.9 0.55 1.9E-05 40.4 2.8 22 162-183 8-29 (170)
274 3b9p_A CG5977-PA, isoform A; A 83.9 0.63 2.2E-05 44.9 3.5 26 160-185 54-79 (297)
275 2chg_A Replication factor C sm 83.8 0.61 2.1E-05 41.7 3.1 24 161-184 39-62 (226)
276 1ky3_A GTP-binding protein YPT 83.7 0.56 1.9E-05 40.8 2.8 22 162-183 10-31 (182)
277 2fn4_A P23, RAS-related protei 83.7 0.52 1.8E-05 41.0 2.5 23 161-183 10-32 (181)
278 3bc1_A RAS-related protein RAB 83.6 0.55 1.9E-05 41.3 2.7 22 162-183 13-34 (195)
279 3t15_A Ribulose bisphosphate c 83.6 0.54 1.9E-05 46.0 2.9 23 163-185 39-61 (293)
280 1vht_A Dephospho-COA kinase; s 83.6 0.65 2.2E-05 42.7 3.3 24 159-182 3-26 (218)
281 4dsu_A GTPase KRAS, isoform 2B 83.6 0.57 1.9E-05 41.1 2.8 22 162-183 6-27 (189)
282 2www_A Methylmalonic aciduria 83.6 0.63 2.2E-05 46.9 3.4 24 160-183 74-97 (349)
283 3q85_A GTP-binding protein REM 83.5 0.6 2E-05 40.3 2.9 21 162-182 4-24 (169)
284 1g16_A RAS-related protein SEC 83.5 0.59 2E-05 40.2 2.8 22 162-183 5-26 (170)
285 2px0_A Flagellar biosynthesis 83.5 0.61 2.1E-05 46.0 3.2 27 158-184 103-129 (296)
286 2erx_A GTP-binding protein DI- 83.4 0.62 2.1E-05 40.0 2.9 23 161-183 4-26 (172)
287 2f1r_A Molybdopterin-guanine d 83.3 0.31 1.1E-05 44.3 0.9 24 161-184 3-26 (171)
288 1upt_A ARL1, ADP-ribosylation 83.3 0.59 2E-05 40.3 2.7 25 159-183 6-30 (171)
289 3ake_A Cytidylate kinase; CMP 83.3 0.7 2.4E-05 41.7 3.3 24 162-185 4-27 (208)
290 3tqc_A Pantothenate kinase; bi 83.2 0.57 1.9E-05 47.1 2.9 23 162-184 94-116 (321)
291 3j16_B RLI1P; ribosome recycli 83.1 0.59 2E-05 51.0 3.2 29 155-183 368-401 (608)
292 1lv7_A FTSH; alpha/beta domain 83.1 0.65 2.2E-05 43.9 3.1 23 163-185 48-70 (257)
293 1uj2_A Uridine-cytidine kinase 82.9 0.7 2.4E-05 43.9 3.3 24 162-185 24-47 (252)
294 3q72_A GTP-binding protein RAD 82.9 0.57 2E-05 40.3 2.5 20 162-181 4-23 (166)
295 3sfz_A APAF-1, apoptotic pepti 82.9 0.63 2.2E-05 53.4 3.5 23 161-183 148-170 (1249)
296 1z0f_A RAB14, member RAS oncog 82.8 0.63 2.1E-05 40.4 2.7 22 162-183 17-38 (179)
297 3ihw_A Centg3; RAS, centaurin, 82.8 0.62 2.1E-05 41.7 2.7 22 162-183 22-43 (184)
298 3clv_A RAB5 protein, putative; 82.8 0.7 2.4E-05 40.7 3.1 23 161-183 8-30 (208)
299 2hxs_A RAB-26, RAS-related pro 82.8 0.62 2.1E-05 40.5 2.7 22 162-183 8-29 (178)
300 1p9r_A General secretion pathw 82.7 0.69 2.4E-05 48.1 3.4 28 157-184 164-191 (418)
301 1vt4_I APAF-1 related killer D 82.7 2.8 9.6E-05 48.8 8.6 24 160-183 150-173 (1221)
302 1j8m_F SRP54, signal recogniti 82.6 5.7 0.00019 39.0 9.9 27 158-184 96-122 (297)
303 2oap_1 GSPE-2, type II secreti 82.6 0.35 1.2E-05 51.6 1.1 30 155-184 255-284 (511)
304 3gmt_A Adenylate kinase; ssgci 82.6 0.75 2.6E-05 44.0 3.3 26 161-186 9-34 (230)
305 2oil_A CATX-8, RAS-related pro 82.4 0.65 2.2E-05 41.3 2.7 22 162-183 27-48 (193)
306 1mh1_A RAC1; GTP-binding, GTPa 82.4 0.66 2.3E-05 40.6 2.7 22 162-183 7-28 (186)
307 1m2o_B GTP-binding protein SAR 82.4 0.61 2.1E-05 41.9 2.5 25 159-183 22-46 (190)
308 3con_A GTPase NRAS; structural 82.4 0.66 2.2E-05 41.1 2.7 22 162-183 23-44 (190)
309 4b4t_I 26S protease regulatory 82.3 1.4 4.7E-05 46.2 5.5 23 163-185 219-241 (437)
310 4b4t_M 26S protease regulatory 82.3 0.94 3.2E-05 47.4 4.2 24 162-185 217-240 (434)
311 2a9k_A RAS-related protein RAL 82.3 0.67 2.3E-05 40.5 2.7 22 162-183 20-41 (187)
312 1vma_A Cell division protein F 82.3 0.8 2.7E-05 45.5 3.5 28 157-184 101-128 (306)
313 2y8e_A RAB-protein 6, GH09086P 82.2 0.63 2.2E-05 40.3 2.5 22 162-183 16-37 (179)
314 2efe_B Small GTP-binding prote 82.2 0.67 2.3E-05 40.4 2.7 22 162-183 14-35 (181)
315 1njg_A DNA polymerase III subu 82.2 0.81 2.8E-05 41.3 3.3 24 162-185 47-70 (250)
316 2p67_A LAO/AO transport system 82.2 0.58 2E-05 46.9 2.5 29 155-183 51-79 (341)
317 3dz8_A RAS-related protein RAB 82.1 0.73 2.5E-05 41.1 3.0 23 162-184 25-47 (191)
318 2lkc_A Translation initiation 82.1 0.63 2.1E-05 40.5 2.4 25 159-183 7-31 (178)
319 3g5u_A MCG1178, multidrug resi 82.0 0.54 1.9E-05 55.6 2.5 34 150-183 1048-1082(1284)
320 2qz4_A Paraplegin; AAA+, SPG7, 82.0 0.76 2.6E-05 43.1 3.1 26 160-185 39-64 (262)
321 3kkq_A RAS-related protein M-R 82.0 0.7 2.4E-05 40.5 2.7 22 162-183 20-41 (183)
322 1ex7_A Guanylate kinase; subst 81.9 0.76 2.6E-05 42.4 3.0 21 163-183 4-24 (186)
323 1m7b_A RND3/RHOE small GTP-bin 81.9 0.65 2.2E-05 41.1 2.5 22 162-183 9-30 (184)
324 2g6b_A RAS-related protein RAB 81.9 0.72 2.5E-05 40.2 2.7 22 162-183 12-33 (180)
325 3g5u_A MCG1178, multidrug resi 81.7 0.57 2E-05 55.4 2.6 35 149-183 404-439 (1284)
326 1xwi_A SKD1 protein; VPS4B, AA 81.7 3.4 0.00012 40.8 8.0 24 161-184 46-69 (322)
327 3lxx_A GTPase IMAP family memb 81.7 0.74 2.5E-05 43.1 2.9 22 162-183 31-52 (239)
328 3bwd_D RAC-like GTP-binding pr 81.6 0.74 2.5E-05 40.2 2.7 23 161-183 9-31 (182)
329 3tw8_B RAS-related protein RAB 81.6 0.74 2.5E-05 40.0 2.7 21 162-182 11-31 (181)
330 2bme_A RAB4A, RAS-related prot 81.6 0.68 2.3E-05 40.7 2.5 22 162-183 12-33 (186)
331 1gvn_B Zeta; postsegregational 81.5 0.88 3E-05 44.5 3.5 29 156-184 29-57 (287)
332 2bov_A RAla, RAS-related prote 81.5 0.74 2.5E-05 41.2 2.7 22 162-183 16-37 (206)
333 1ega_A Protein (GTP-binding pr 81.5 0.63 2.2E-05 45.8 2.5 25 159-183 7-31 (301)
334 2gf9_A RAS-related protein RAB 81.4 0.75 2.6E-05 40.9 2.7 22 162-183 24-45 (189)
335 3c5c_A RAS-like protein 12; GD 81.3 0.78 2.7E-05 41.0 2.8 22 162-183 23-44 (187)
336 2xb4_A Adenylate kinase; ATP-b 81.2 0.91 3.1E-05 42.3 3.3 24 162-185 2-25 (223)
337 2ze6_A Isopentenyl transferase 81.2 0.84 2.9E-05 43.7 3.1 24 162-185 3-26 (253)
338 2cxx_A Probable GTP-binding pr 81.2 0.7 2.4E-05 40.7 2.4 22 162-183 3-24 (190)
339 3zvl_A Bifunctional polynucleo 81.2 4.3 0.00015 41.7 8.7 27 159-185 257-283 (416)
340 3tkl_A RAS-related protein RAB 81.2 0.77 2.6E-05 40.7 2.7 22 162-183 18-39 (196)
341 3kl4_A SRP54, signal recogniti 81.2 4.7 0.00016 42.0 9.1 27 158-184 95-121 (433)
342 2iwr_A Centaurin gamma 1; ANK 81.0 0.59 2E-05 40.9 1.8 23 161-183 8-30 (178)
343 3a4m_A L-seryl-tRNA(SEC) kinas 81.0 0.95 3.2E-05 43.3 3.4 26 158-183 2-27 (260)
344 3uk6_A RUVB-like 2; hexameric 80.9 0.87 3E-05 45.2 3.3 26 160-185 70-95 (368)
345 1vg8_A RAS-related protein RAB 80.9 0.8 2.7E-05 41.0 2.8 22 162-183 10-31 (207)
346 1nrj_B SR-beta, signal recogni 80.9 0.79 2.7E-05 41.7 2.7 24 161-184 13-36 (218)
347 1z06_A RAS-related protein RAB 80.9 0.82 2.8E-05 40.6 2.8 22 162-183 22-43 (189)
348 4b4t_H 26S protease regulatory 80.8 2.1 7.1E-05 45.2 6.2 24 162-185 245-268 (467)
349 2qgz_A Helicase loader, putati 80.8 0.97 3.3E-05 44.7 3.5 26 159-184 151-176 (308)
350 2cjw_A GTP-binding protein GEM 80.7 0.95 3.3E-05 40.8 3.2 22 162-183 8-29 (192)
351 1zd9_A ADP-ribosylation factor 80.5 0.83 2.9E-05 40.6 2.7 22 162-183 24-45 (188)
352 1hqc_A RUVB; extended AAA-ATPa 80.5 2.4 8.2E-05 41.0 6.3 25 161-185 39-63 (324)
353 3reg_A RHO-like small GTPase; 80.5 0.84 2.9E-05 40.7 2.7 22 162-183 25-46 (194)
354 3t5g_A GTP-binding protein RHE 80.5 0.79 2.7E-05 40.1 2.5 22 162-183 8-29 (181)
355 3pqc_A Probable GTP-binding pr 80.5 0.76 2.6E-05 40.5 2.4 22 162-183 25-46 (195)
356 1svi_A GTP-binding protein YSX 80.5 0.76 2.6E-05 40.8 2.4 24 160-183 23-46 (195)
357 2fg5_A RAB-22B, RAS-related pr 80.4 0.78 2.7E-05 41.0 2.5 22 162-183 25-46 (192)
358 2atv_A RERG, RAS-like estrogen 80.2 0.88 3E-05 40.7 2.8 37 146-183 15-51 (196)
359 2a5j_A RAS-related protein RAB 80.0 0.89 3E-05 40.5 2.7 22 162-183 23-44 (191)
360 3m6a_A ATP-dependent protease 79.9 1 3.4E-05 48.3 3.5 27 159-185 107-133 (543)
361 2ohf_A Protein OLA1, GTP-bindi 79.8 0.85 2.9E-05 47.1 2.8 28 156-183 18-45 (396)
362 3syl_A Protein CBBX; photosynt 79.7 0.99 3.4E-05 43.6 3.1 26 160-185 67-92 (309)
363 2p5s_A RAS and EF-hand domain 79.7 0.91 3.1E-05 40.8 2.7 22 162-183 30-51 (199)
364 2fh5_B SR-beta, signal recogni 79.6 0.92 3.1E-05 41.1 2.7 23 161-183 8-30 (214)
365 3u61_B DNA polymerase accessor 79.6 2.8 9.6E-05 40.8 6.4 24 162-185 49-73 (324)
366 1x3s_A RAS-related protein RAB 79.6 0.94 3.2E-05 40.0 2.7 22 162-183 17-38 (195)
367 3oes_A GTPase rhebl1; small GT 79.5 0.86 3E-05 41.0 2.5 24 160-183 24-47 (201)
368 2qnr_A Septin-2, protein NEDD5 79.5 0.74 2.5E-05 45.4 2.2 21 162-182 20-40 (301)
369 2r62_A Cell division protease 79.3 0.78 2.7E-05 43.5 2.2 23 163-185 47-69 (268)
370 3n70_A Transport activator; si 79.2 1.1 3.6E-05 38.8 2.9 26 159-184 23-48 (145)
371 2gf0_A GTP-binding protein DI- 79.1 1 3.6E-05 39.9 2.9 24 160-183 8-31 (199)
372 1ofh_A ATP-dependent HSL prote 79.0 1.1 3.9E-05 42.9 3.3 26 160-185 50-75 (310)
373 1d2n_A N-ethylmaleimide-sensit 79.0 1.1 3.7E-05 42.8 3.1 27 159-185 63-89 (272)
374 3cr8_A Sulfate adenylyltranfer 79.0 0.73 2.5E-05 49.7 2.1 29 156-184 365-393 (552)
375 3t1o_A Gliding protein MGLA; G 79.0 1.1 3.8E-05 39.4 3.0 21 162-182 16-36 (198)
376 2h17_A ADP-ribosylation factor 78.9 0.71 2.4E-05 40.8 1.7 23 161-183 22-44 (181)
377 1fzq_A ADP-ribosylation factor 78.9 0.93 3.2E-05 40.2 2.5 23 160-182 16-38 (181)
378 2ew1_A RAS-related protein RAB 78.9 0.92 3.2E-05 41.4 2.5 22 162-183 28-49 (201)
379 1a7j_A Phosphoribulokinase; tr 78.9 0.93 3.2E-05 44.5 2.6 25 160-184 5-29 (290)
380 1np6_A Molybdopterin-guanine d 78.8 1.2 4.2E-05 40.4 3.3 23 161-183 7-29 (174)
381 1zbd_A Rabphilin-3A; G protein 78.8 1.1 3.6E-05 40.2 2.9 22 162-183 10-31 (203)
382 4f4c_A Multidrug resistance pr 78.6 0.9 3.1E-05 53.9 2.9 32 153-184 437-468 (1321)
383 3umf_A Adenylate kinase; rossm 78.6 1.2 4.1E-05 42.1 3.2 28 159-186 28-55 (217)
384 2dhr_A FTSH; AAA+ protein, hex 78.5 1 3.4E-05 48.0 2.9 27 157-185 63-89 (499)
385 2atx_A Small GTP binding prote 78.4 1 3.5E-05 40.1 2.5 22 162-183 20-41 (194)
386 1gwn_A RHO-related GTP-binding 78.3 0.99 3.4E-05 41.3 2.5 22 162-183 30-51 (205)
387 4bas_A ADP-ribosylation factor 78.2 1.1 3.7E-05 39.8 2.7 22 161-182 18-39 (199)
388 3k53_A Ferrous iron transport 78.2 1 3.4E-05 43.2 2.6 22 162-183 5-26 (271)
389 2hf9_A Probable hydrogenase ni 78.2 1.2 4E-05 40.9 3.0 25 160-184 38-62 (226)
390 1zj6_A ADP-ribosylation factor 78.2 0.9 3.1E-05 40.2 2.1 24 160-183 16-39 (187)
391 2bcg_Y Protein YP2, GTP-bindin 78.0 1.1 3.9E-05 40.2 2.8 22 162-183 10-31 (206)
392 2fu5_C RAS-related protein RAB 78.0 0.76 2.6E-05 40.3 1.6 22 162-183 10-31 (183)
393 1gtv_A TMK, thymidylate kinase 78.0 0.51 1.8E-05 42.9 0.4 24 162-185 2-25 (214)
394 1ksh_A ARF-like protein 2; sma 77.9 1.1 3.8E-05 39.4 2.7 24 159-182 17-40 (186)
395 2o52_A RAS-related protein RAB 77.9 0.88 3E-05 41.1 2.0 22 162-183 27-48 (200)
396 2fv8_A H6, RHO-related GTP-bin 77.8 1.2 4E-05 40.4 2.9 22 162-183 27-48 (207)
397 1sxj_E Activator 1 40 kDa subu 77.8 0.97 3.3E-05 44.5 2.5 27 157-183 33-59 (354)
398 1moz_A ARL1, ADP-ribosylation 77.7 0.76 2.6E-05 40.2 1.5 23 159-181 17-39 (183)
399 3cph_A RAS-related protein SEC 77.7 1.3 4.3E-05 39.9 3.0 23 161-183 21-43 (213)
400 1a5t_A Delta prime, HOLB; zinc 77.7 7.4 0.00025 38.4 8.9 24 162-185 26-49 (334)
401 3vfd_A Spastin; ATPase, microt 77.6 2.3 7.9E-05 43.0 5.3 26 160-185 148-173 (389)
402 1f6b_A SAR1; gtpases, N-termin 77.6 0.91 3.1E-05 41.1 2.0 22 160-181 25-46 (198)
403 2ocp_A DGK, deoxyguanosine kin 77.5 1.3 4.5E-05 41.5 3.2 26 159-184 1-26 (241)
404 3thx_A DNA mismatch repair pro 77.5 1.4 4.8E-05 50.4 3.9 30 152-181 654-683 (934)
405 4gzl_A RAS-related C3 botulinu 77.5 1.1 3.7E-05 40.7 2.5 26 159-184 29-54 (204)
406 2qby_B CDC6 homolog 3, cell di 77.4 1.3 4.5E-05 43.9 3.3 27 158-184 43-69 (384)
407 1xjc_A MOBB protein homolog; s 77.4 1.4 4.9E-05 40.0 3.2 23 162-184 6-28 (169)
408 2q3h_A RAS homolog gene family 77.2 1 3.5E-05 40.3 2.3 23 161-183 21-43 (201)
409 2f7s_A C25KG, RAS-related prot 77.1 1.3 4.4E-05 40.2 2.9 21 162-182 27-47 (217)
410 1wb9_A DNA mismatch repair pro 77.1 1.5 5E-05 49.4 3.9 31 152-183 600-630 (800)
411 2il1_A RAB12; G-protein, GDP, 76.9 1.2 4.2E-05 39.7 2.7 21 162-182 28-48 (192)
412 3cbq_A GTP-binding protein REM 76.8 1 3.5E-05 40.6 2.2 20 162-181 25-44 (195)
413 1udx_A The GTP-binding protein 76.6 1.1 3.7E-05 46.6 2.5 32 152-183 149-180 (416)
414 2qen_A Walker-type ATPase; unk 76.6 1.5 5.1E-05 42.6 3.4 24 160-183 31-54 (350)
415 3q3j_B RHO-related GTP-binding 76.6 1.3 4.3E-05 40.7 2.7 23 161-183 28-50 (214)
416 2qmh_A HPR kinase/phosphorylas 76.6 1.7 5.8E-05 40.9 3.5 28 158-185 32-59 (205)
417 4aby_A DNA repair protein RECN 76.5 0.61 2.1E-05 47.4 0.5 38 146-184 46-84 (415)
418 2wsm_A Hydrogenase expression/ 76.5 1.4 4.8E-05 40.2 3.0 26 159-184 29-54 (221)
419 2h92_A Cytidylate kinase; ross 76.4 1.5 5.1E-05 40.1 3.2 26 160-185 3-28 (219)
420 2gco_A H9, RHO-related GTP-bin 76.4 1.3 4.6E-05 39.8 2.8 22 162-183 27-48 (201)
421 2hup_A RAS-related protein RAB 76.2 1.3 4.3E-05 40.1 2.5 22 162-183 31-52 (201)
422 1jal_A YCHF protein; nucleotid 76.1 1.5 5.2E-05 44.7 3.3 24 160-183 2-25 (363)
423 2h57_A ADP-ribosylation factor 75.9 1.1 3.7E-05 39.8 2.0 23 161-183 22-44 (190)
424 4fcw_A Chaperone protein CLPB; 75.8 1.4 4.9E-05 42.4 3.0 25 161-185 48-72 (311)
425 2b6h_A ADP-ribosylation factor 75.7 1.3 4.4E-05 39.7 2.5 22 160-181 29-50 (192)
426 2f6r_A COA synthase, bifunctio 75.7 1.4 4.7E-05 42.9 2.8 21 162-182 77-97 (281)
427 3szr_A Interferon-induced GTP- 75.6 0.61 2.1E-05 50.7 0.3 33 150-182 30-67 (608)
428 2j0v_A RAC-like GTP-binding pr 75.6 1.3 4.5E-05 40.0 2.5 23 161-183 10-32 (212)
429 2ffh_A Protein (FFH); SRP54, s 75.5 8.3 0.00028 40.0 8.8 26 159-184 97-122 (425)
430 2xtp_A GTPase IMAP family memb 75.3 1.4 4.7E-05 41.7 2.7 24 161-184 23-46 (260)
431 2qag_C Septin-7; cell cycle, c 75.2 1.2 4.1E-05 46.3 2.4 21 163-183 34-54 (418)
432 2qu8_A Putative nucleolar GTP- 75.1 1.4 4.9E-05 40.6 2.7 22 161-182 30-51 (228)
433 2yc2_C IFT27, small RAB-relate 75.0 0.81 2.8E-05 40.9 0.9 23 161-183 21-43 (208)
434 3lxw_A GTPase IMAP family memb 75.0 1.5 5.2E-05 41.6 2.9 23 161-183 22-44 (247)
435 2ce7_A Cell division protein F 75.0 1.5 5.1E-05 46.4 3.1 23 163-185 52-74 (476)
436 2g3y_A GTP-binding protein GEM 74.7 1.6 5.5E-05 40.5 2.9 21 161-181 38-58 (211)
437 3cpj_B GTP-binding protein YPT 74.7 1.5 5.2E-05 40.2 2.7 22 162-183 15-36 (223)
438 2j1l_A RHO-related GTP-binding 74.6 1.5 5.2E-05 40.0 2.7 21 162-182 36-56 (214)
439 3thx_B DNA mismatch repair pro 74.5 1.3 4.5E-05 50.5 2.7 31 152-182 665-695 (918)
440 3hws_A ATP-dependent CLP prote 74.4 1.7 5.9E-05 43.4 3.2 26 160-185 51-76 (363)
441 3b1v_A Ferrous iron uptake tra 74.4 1.6 5.5E-05 42.4 2.9 22 161-182 4-25 (272)
442 2ga8_A Hypothetical 39.9 kDa p 74.2 1.7 5.8E-05 44.4 3.1 29 157-185 19-49 (359)
443 1sxj_C Activator 1 40 kDa subu 74.0 1.6 5.4E-05 43.2 2.8 22 163-184 49-70 (340)
444 2r44_A Uncharacterized protein 74.0 1.2 4.1E-05 43.7 1.9 28 158-185 44-71 (331)
445 1ls1_A Signal recognition part 73.8 2 6.8E-05 42.2 3.5 26 159-184 97-122 (295)
446 3k1j_A LON protease, ATP-depen 73.7 1.5 5.1E-05 47.4 2.8 30 155-184 55-84 (604)
447 4dkx_A RAS-related protein RAB 73.5 1.7 5.7E-05 40.6 2.7 22 162-183 15-36 (216)
448 1ypw_A Transitional endoplasmi 73.5 1.8 6E-05 48.7 3.3 29 157-185 235-263 (806)
449 2qtf_A Protein HFLX, GTP-bindi 73.2 15 0.00052 37.0 10.0 24 160-183 178-202 (364)
450 1qvr_A CLPB protein; coiled co 73.1 6.1 0.00021 44.4 7.7 25 160-184 191-215 (854)
451 2orw_A Thymidine kinase; TMTK, 73.0 2.1 7.3E-05 38.9 3.2 26 159-184 2-27 (184)
452 1sxj_D Activator 1 41 kDa subu 73.0 1.9 6.5E-05 42.2 3.1 24 161-184 59-82 (353)
453 1mky_A Probable GTP-binding pr 72.8 1.7 5.9E-05 44.9 2.9 23 161-183 181-203 (439)
454 2dby_A GTP-binding protein; GD 72.8 1.7 5.7E-05 44.4 2.7 23 162-184 3-25 (368)
455 2fna_A Conserved hypothetical 72.8 1.7 5.9E-05 42.1 2.7 24 161-184 31-54 (357)
456 2c9o_A RUVB-like 1; hexameric 72.4 2.2 7.4E-05 44.4 3.5 26 160-185 63-88 (456)
457 3llu_A RAS-related GTP-binding 72.3 1.9 6.4E-05 38.7 2.6 21 162-182 22-42 (196)
458 2gno_A DNA polymerase III, gam 72.1 7.6 0.00026 38.2 7.2 26 159-184 17-42 (305)
459 1um8_A ATP-dependent CLP prote 71.8 2.1 7.2E-05 42.9 3.2 26 160-185 72-97 (376)
460 1ewq_A DNA mismatch repair pro 71.7 2.3 7.8E-05 47.7 3.7 24 160-183 576-599 (765)
461 2x77_A ADP-ribosylation factor 71.6 1.3 4.6E-05 39.1 1.5 23 159-181 21-43 (189)
462 1iqp_A RFCS; clamp loader, ext 71.6 2.5 8.5E-05 40.7 3.5 27 158-184 44-70 (327)
463 3cf2_A TER ATPase, transitiona 71.6 3.7 0.00013 46.3 5.3 24 162-185 240-263 (806)
464 3a1s_A Iron(II) transport prot 71.5 2.1 7.1E-05 41.0 2.9 21 162-182 7-27 (258)
465 1wf3_A GTP-binding protein; GT 71.0 1.9 6.4E-05 42.5 2.5 25 159-183 6-30 (301)
466 2o5v_A DNA replication and rep 71.0 2.7 9.4E-05 42.6 3.8 36 146-182 12-48 (359)
467 3gj0_A GTP-binding nuclear pro 70.8 1.3 4.3E-05 40.5 1.2 21 162-182 17-37 (221)
468 3i8s_A Ferrous iron transport 70.6 1.8 6E-05 41.8 2.2 22 162-183 5-26 (274)
469 1qhl_A Protein (cell division 70.5 0.84 2.9E-05 43.5 -0.2 23 161-183 28-50 (227)
470 2bjv_A PSP operon transcriptio 70.4 2.2 7.6E-05 40.3 2.8 25 160-184 29-53 (265)
471 3p32_A Probable GTPase RV1496/ 70.2 2.7 9.1E-05 42.2 3.5 27 158-184 77-103 (355)
472 3d3q_A TRNA delta(2)-isopenten 69.9 2.4 8.2E-05 42.9 3.1 24 162-185 9-32 (340)
473 3th5_A RAS-related C3 botulinu 72.8 0.93 3.2E-05 40.8 0.0 24 159-182 29-52 (204)
474 1g8p_A Magnesium-chelatase 38 69.9 1.8 6E-05 42.4 2.0 26 160-185 45-70 (350)
475 4dhe_A Probable GTP-binding pr 69.7 1.1 3.8E-05 40.8 0.5 24 160-183 29-52 (223)
476 3iby_A Ferrous iron transport 69.6 2.2 7.6E-05 40.8 2.6 22 162-183 3-24 (256)
477 1tue_A Replication protein E1; 69.5 2.3 7.8E-05 40.2 2.6 27 158-184 56-82 (212)
478 3tqf_A HPR(Ser) kinase; transf 69.3 2.6 8.9E-05 38.9 2.9 27 158-184 14-40 (181)
479 1ltq_A Polynucleotide kinase; 69.3 2.4 8.2E-05 40.8 2.9 22 162-183 4-25 (301)
480 2zan_A Vacuolar protein sortin 69.2 2.4 8.2E-05 44.0 3.0 24 161-184 168-191 (444)
481 2j37_W Signal recognition part 69.0 15 0.00052 38.9 9.2 27 158-184 99-125 (504)
482 3t5d_A Septin-7; GTP-binding p 69.0 2.2 7.6E-05 40.9 2.5 25 157-181 3-29 (274)
483 3v9p_A DTMP kinase, thymidylat 68.9 2.7 9.2E-05 39.8 3.0 29 157-185 22-50 (227)
484 2aka_B Dynamin-1; fusion prote 68.2 2.3 7.8E-05 40.8 2.4 23 161-183 27-49 (299)
485 4i1u_A Dephospho-COA kinase; s 68.0 2.7 9.4E-05 39.5 2.8 23 162-185 11-33 (210)
486 3iev_A GTP-binding protein ERA 68.0 2.6 9E-05 41.4 2.9 23 161-183 11-33 (308)
487 1h65_A Chloroplast outer envel 67.7 2.6 8.7E-05 40.3 2.6 21 162-182 41-61 (270)
488 1sxj_A Activator 1 95 kDa subu 67.7 3.2 0.00011 43.9 3.6 26 160-185 77-102 (516)
489 1p5z_B DCK, deoxycytidine kina 67.7 1.4 5E-05 41.8 0.9 27 158-184 22-48 (263)
490 3upu_A ATP-dependent DNA helic 67.5 2.7 9.3E-05 43.6 3.0 23 162-184 47-69 (459)
491 3def_A T7I23.11 protein; chlor 67.4 2.7 9.1E-05 40.1 2.7 24 161-184 37-60 (262)
492 2chq_A Replication factor C sm 67.3 3 0.0001 39.9 3.1 26 159-184 37-62 (319)
493 4edh_A DTMP kinase, thymidylat 67.3 3.5 0.00012 38.5 3.4 27 159-185 5-31 (213)
494 1w1w_A Structural maintenance 67.3 3.2 0.00011 42.6 3.5 27 157-183 23-49 (430)
495 1nij_A Hypothetical protein YJ 67.0 2.6 8.9E-05 41.7 2.6 22 162-183 6-27 (318)
496 1sxj_B Activator 1 37 kDa subu 66.7 3.2 0.00011 39.8 3.1 24 161-184 43-66 (323)
497 1jwy_B Dynamin A GTPase domain 66.5 2.7 9.4E-05 40.6 2.6 23 161-183 25-47 (315)
498 4djt_A GTP-binding nuclear pro 66.4 2.5 8.7E-05 38.2 2.2 20 162-181 13-32 (218)
499 3co5_A Putative two-component 66.0 0.99 3.4E-05 39.0 -0.6 23 160-182 27-49 (143)
500 1ypw_A Transitional endoplasmi 66.0 2.5 8.6E-05 47.5 2.5 29 157-185 508-536 (806)
No 1
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=100.00 E-value=6.5e-123 Score=975.23 Aligned_cols=455 Identities=59% Similarity=1.002 Sum_probs=432.4
Q ss_pred ceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCeeeEecC
Q 011350 19 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVS 98 (488)
Q Consensus 19 ~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~VpvG 98 (488)
+++|+|++|.|++++++|++.+.+||+|+|..++|..+.|||++|+++++.+++|++++||+++|++|.+||++++||||
T Consensus 10 ~~~g~v~~v~g~~v~v~gl~~~~~ge~v~i~~~~g~~~~geVv~~~~~~~~~~~~~~~~gl~~~g~~V~~tg~~~~vpvg 89 (465)
T 3vr4_D 10 KEYRTIKEVVGPLMAVEKVSGVKYEELIEVRMQNGEIRRGQVLEVQEDKAMVQIFEGTSGINLKNSSVRFLGHPLQLGVS 89 (465)
T ss_dssp -CBCCEEEEETTEEEEESCCSCCTTCEEEEECTTSCEEEEEEEEEESSEEEEEETTCCTTCCTTTCEEEECSSCCEEEEC
T ss_pred ceEEEEEEEECCEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEeCCeEEEEEecCccccccCCCEEEECCCcceeecc
Confidence 58999999999999999998899999999986667778999999999999999999999998559999999999999999
Q ss_pred ccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCChhHHHH
Q 011350 99 LDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAA 178 (488)
Q Consensus 99 ~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt~Ll~ 178 (488)
++|||||+|++|+|||+++++....++++++.||+|++|.++++||+||||+||+|+|||||||+||||++|+|||+|++
T Consensus 90 ~~lLGRV~d~lG~PiD~~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifgg~G~GKt~L~~ 169 (465)
T 3vr4_D 90 EDMIGRVFDGLGRPKDNGPEILPEKYLDINGEVINPIARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHKELAA 169 (465)
T ss_dssp GGGTTEEEETTSCBCSCCCCCCCSEEEESSCCCBCTTTEECCCCBCBCSCHHHHTTSCCBTTCBCCEEECTTSCHHHHHH
T ss_pred hhhccceeccCCcccCCCCCCcccceeeccCcccCchhccCcccccccCceEEecccccccCCEEEEeCCCCcChHHHHH
Confidence 99999999999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHHHHHHH
Q 011350 179 QICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALT 258 (488)
Q Consensus 179 ~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~t 258 (488)
||++++.. + +.+++++|||++||||.+++.++.+++.++|+|+||++|++|+|+||.+|++++|+|+|
T Consensus 170 ~Ia~~~~~-----------~-~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~~~a~t 237 (465)
T 3vr4_D 170 QIARQATV-----------L-DSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPRMALT 237 (465)
T ss_dssp HHHHHCBC-----------S-SCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-----------c-cCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHHHHHHH
Confidence 99998741 1 11356799999999997777777788999999999999999999999999999999999
Q ss_pred HHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEEeecCCC
Q 011350 259 TAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDD 338 (488)
Q Consensus 259 iAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~~~~dD 338 (488)
+|||||+++|+|||++|||+||||+|+||||+++||||+++|||||+|+.|++||||||++++++||||+||+|++|+||
T Consensus 238 iAEyfrd~~G~~VLl~~DslTr~A~A~REisl~lge~P~~~GYp~~vf~~l~~l~ERAg~~~~~~GSIT~i~tv~~~~dD 317 (465)
T 3vr4_D 238 AAEYLAYEKGMHVLVIMTDMTNYAEALREISAARREVPGRRGYPGYLYTNLATLFERAGRIRGLKGSVTQIPILTMPEDD 317 (465)
T ss_dssp HHHHHHHTTCCEEEEEEECHHHHHHHHHHHHHHTTCCCCGGGSCTTHHHHHHHHHTSCEEETTCSCEEEEEEEEECGGGC
T ss_pred HHHHHHHhcCCeEEEEEcChHHHHHHHHHHHhhcCCCCccccCCchHHHHhHHHHHhhhccCCCCCcEEEEEEEEecCCC
Confidence 99999944799999999999999999999999999999999999999999999999999987678999999999999999
Q ss_pred CCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHhC
Q 011350 339 ITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVG 418 (488)
Q Consensus 339 ~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~~~l~~~~~~~G 418 (488)
++|||||++++|+||||+|||+||++||||||||+.|+||+|+.++++++++++|+++++++++.|+++++|++++++.|
T Consensus 318 ~~~pI~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~m~~~ig~~~~~~~h~~~a~~l~~~~~~~~el~~i~~~~G 397 (465)
T 3vr4_D 318 KTHPIPDLTGYITEGQIILTRELYKSGIQPPIDVLPSLSRLKDKGTGAGKTREDHAATMNQLFAAYAQGKQAKELAVVLG 397 (465)
T ss_dssp TTSHHHHHHHHHSSEEEEBCHHHHHTTCSSCBCTTTCEETTGGGSCSTTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccchhHHHhhhcCeEEEEcHHHHhCCCCCCCCccccchhcchhhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999998888889999999999999999999999999999
Q ss_pred CcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHHhcchhhhcCCChhhHhhhcccc
Q 011350 419 EEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRD 485 (488)
Q Consensus 419 ~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (488)
.|+++++|+..+.+++++++.||+|+++++.+++++++.+|++++.+|.+++.++++++|+|||+++
T Consensus 398 ~d~L~~~d~~~~~~~~~~~~~fL~Q~~~e~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~~~~~~~ 464 (465)
T 3vr4_D 398 ESALSDIDKIYAKFAERFENEYVNQGFYTNRTITETLDLGWELLAMLPRTELKRIKDDLLDKYLPEG 464 (465)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHTTCCCTTCCCCHHHHHHHHHHHHTTSCTTTCTTSCHHHHHHHCC--
T ss_pred CCCCCHHHHHHHHhhHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999986699999999999999999999999999999999999999999999985
No 2
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=100.00 E-value=4.3e-122 Score=968.76 Aligned_cols=458 Identities=57% Similarity=0.945 Sum_probs=432.8
Q ss_pred cceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCeeeEec
Q 011350 18 AMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPV 97 (488)
Q Consensus 18 ~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~Vpv 97 (488)
.+++|+|++|.|+++++.|++.+.+||+|+|..++|..+.|||++|+++++.+++|++++||+++|++|.+||++++|||
T Consensus 5 ~~~~g~V~~v~g~~v~v~gl~~~~~ge~v~i~~~~g~~~~geVv~~~~~~~~~~~~~~~~gl~~~g~~V~~tg~~~~vpv 84 (464)
T 3gqb_B 5 KKEYTGITYISGPLLFVENAKDLAYGAIVDIKDGTGRVRGGQVIEVSEEYAVIQVFEETTGLDLATTSVSLVEDVARLGV 84 (464)
T ss_dssp CCCBCCEEEEETTEEEEESCTTSCTTCEEEEECTTSCEEEEEEEEEESSEEEEEESSCCTTCCSSSCEEEEEESSCEEEE
T ss_pred cceeeEEEEEECCEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEeCCeEEEEEecCccccccCCCEEEECCCCcEEEe
Confidence 45899999999999999999889999999998667777899999999999999999999999855999999999999999
Q ss_pred CccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCChhHHH
Q 011350 98 SLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 177 (488)
Q Consensus 98 G~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt~Ll 177 (488)
|++|||||+|++|+|||+++++....++++++.||+|++|.++++||+||||+||+|+|||||||+||||++|+|||+|+
T Consensus 85 g~~lLGRV~d~lG~PiD~~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifgg~G~GKt~L~ 164 (464)
T 3gqb_B 85 SKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPANEIA 164 (464)
T ss_dssp CSTTTTEEEETTCCBCSSSCCCCCSEEEETTCCCBCGGGBCCCCCBCBCSCHHHHTTSCCBTTCBCCEEEETTSCHHHHH
T ss_pred ChHhcCCEeccCCcccCCCccccCcceeeccCCCCChhhccCccccccCcceeeecccccccCCEEEEecCCCCCchHHH
Confidence 99999999999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccccccccccC--CCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHHHH
Q 011350 178 AQICRQAGLVKRLEKTDNLLEDG--EEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRI 255 (488)
Q Consensus 178 ~~i~~~~~~~~~~~~~d~~~~~~--~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~~~ 255 (488)
+||++++.... ...++ .+++++|||++||||.+++.++.+++.++|+|+||++|++|+|+||.+|++++|+
T Consensus 165 ~~Ia~~~~a~~-------~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~~~r~~~~~~ 237 (464)
T 3gqb_B 165 AQIARQATVRP-------DLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIERILTPRM 237 (464)
T ss_dssp HHHHHHCBCCH-------HHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCTHHHHHHHHH
T ss_pred HHHHHHHHhcc-------cccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCHHHHHHHHHH
Confidence 99999975200 00011 1356799999999998777778889999999999999999999999999999999
Q ss_pred HHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEEeec
Q 011350 256 ALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMP 335 (488)
Q Consensus 256 a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~~~ 335 (488)
|+|+|||||+++|+|||++|||+||||+|+||||+++||||+++||||++|+.|++||||||++++++||||+||+|++|
T Consensus 238 a~tiAEyfrd~~G~~VLl~~DdlTr~A~A~REisl~lge~P~~~GYp~~~f~~l~~l~ERag~~~~~~GSIT~l~~v~~~ 317 (464)
T 3gqb_B 238 ALTVAEYLAFEHDYHVLVILTDMTNYSEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVVEGKKGSVTQIPILSMP 317 (464)
T ss_dssp HHHHHHHHHHTTCCEEEEEEETHHHHHHHHHHHHHTTTCCBCGGGSBTTHHHHHHHHHTSCBCBTTCSCEEEEEEEEEET
T ss_pred HHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHhcCCCCccccCCchHHHHhHHHHHhhcccCCCCCcEEEEEEEEcc
Confidence 99999999944799999999999999999999999999999999999999999999999999987678999999999999
Q ss_pred CCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHccccHHHHHH
Q 011350 336 NDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKA 415 (488)
Q Consensus 336 ~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~~~l~~~~~ 415 (488)
+||++||||+++++|+||||+|||+||++||||||||+.|+||+|+.++++++++++|+++++++++.|+++++|+++++
T Consensus 318 ~dD~~~pi~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~m~~~ig~~~~~~~h~~~a~~l~~~~~~~~el~~i~~ 397 (464)
T 3gqb_B 318 DDDRTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMNNGVGKGKTREDHKQVSDQLYSAYANGVDIRKLVA 397 (464)
T ss_dssp TSCTTSHHHHHHHHHSSEEEEBCHHHHHTTCSSCBCTTTCEETTGGGTSSTTTSCTTHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCccCchhHHHhhhcCeEEEEcHHHHhCCCCCCcCcccchhhcchhhcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888899999999999999999999999999
Q ss_pred HhCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHHhcchhhhcCCChhhHhhhcc
Q 011350 416 VVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYS 483 (488)
Q Consensus 416 ~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (488)
+.|.|+++++|+..+.+++++++.||+|+ +++.+++++++.+|++++.+|++++++|++++|+|||.
T Consensus 398 ~~G~d~L~~~d~~~~~~~~~~~~~fL~Q~-~e~~~~~~s~~~l~~ll~~~p~~~~~~~~~~~~~~~~~ 464 (464)
T 3gqb_B 398 IIGEDALTENDRRYLQFADAFERFFINQG-QQNRSIEESLQIAWALLSMLPQGELKRISKDHIGKYYG 464 (464)
T ss_dssp SSCSCCCCSHHHHTTHHHHHHHHTTTCCT-TCCCCHHHHHHHHHHHHTTSCGGGCTTSCHHHHHHHCC
T ss_pred hcCCCCCCHHHHHHHHhhHHHHHHhcCCC-CCCCCHHHHHHHHHHHHHhCCHHHHhcCCHHHHHHhcC
Confidence 98999999999999999999866899999 99999999999999999999999999999999999994
No 3
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=100.00 E-value=1.5e-121 Score=969.99 Aligned_cols=459 Identities=59% Similarity=1.000 Sum_probs=411.8
Q ss_pred CccccceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCee
Q 011350 14 TLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVL 93 (488)
Q Consensus 14 ~~~~~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~ 93 (488)
+-+..+.+|+|++|.|++++++|+..+.+||+|+|..++|....|||++|+++.+.+++|+++.||+. |++|.+||+++
T Consensus 7 ~~~~~~~~g~V~~V~g~vv~v~g~~~~~~ge~v~i~~~~g~~~~geV~~~~~~~v~~~~~~~t~gl~~-G~~V~~tg~~l 85 (469)
T 2c61_A 7 HHPMVKEYKTITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGGLDK-DCGVIFTGETL 85 (469)
T ss_dssp ---------------CCEEEEECCSCCCTTCEEEEECTTSCEEEEEEEEECSSEEEEEEC--------------CEEEBC
T ss_pred CCcccccccEEEEEECcEEEEeeCCCCCcCCEEEEEeCCCCEEEEEEEEEeCCEEEEEEeCCCcCCCC-CCEEEEcCCCc
Confidence 34567789999999999999999988999999999755555678999999999999999999999995 99999999999
Q ss_pred eEecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCCh
Q 011350 94 KTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPH 173 (488)
Q Consensus 94 ~VpvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GK 173 (488)
+||||++|||||+|++|+|||+.+++.+..++++++.||+|++|.++++||+||||+||+|+|||||||+||||++|+||
T Consensus 86 ~vpvg~~lLGRV~d~lG~PiDg~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGir~ID~l~pigrGQr~~Ifgg~G~GK 165 (469)
T 2c61_A 86 KLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPH 165 (469)
T ss_dssp EEEECGGGTTCEEETTSCBSSSCCCCCCSEEEESSSCSSCCBCSCCCCSBCBCSCHHHHTTSCCBTTCBCCEEECTTSCH
T ss_pred EEEccccceeeEEcccCCCCCCCCCCCccccccccCccCCcccccccccccceeeEeeeeeeccccCCEEEEECCCCCCH
Confidence 99999999999999999999999998888889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHH
Q 011350 174 NEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITP 253 (488)
Q Consensus 174 t~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~ 253 (488)
|+|++||++++.. ++++++++|||++||||.+++.++.+++.++++|+||++|++|+|+||++|++++
T Consensus 166 t~Ll~~Ia~~~~~------------n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~ 233 (469)
T 2c61_A 166 NEIALQIARQASV------------PGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTP 233 (469)
T ss_dssp HHHHHHHHHHCBC------------TTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhh------------ccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHH
Confidence 9999999999752 2334456999999999988888888889888999999999999999999999999
Q ss_pred HHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEEe
Q 011350 254 RIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILT 333 (488)
Q Consensus 254 ~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~ 333 (488)
|+|+|+|||||+|+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++||||||++++++||||+|++|+
T Consensus 234 ~~a~tiAEyfrdd~G~dVLl~~DsltR~A~A~rEis~~lge~P~~~Gyp~~l~~~l~~l~ERAg~~~~~~GSIT~i~~v~ 313 (469)
T 2c61_A 234 RMALTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVKGAKGSVTQIPILS 313 (469)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECHHHHHHHHTTSGGGTTCCTTSTTCCTHHHHHHHHHHTSCEEBTTSSCEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCHHHHHHHHHHHHHhcCCCCcccCcCchhhhhhhhHHhhccccCCCCCceeeeeeee
Confidence 99999999999669999999999999999999999999999999999999999999999999999876789999999999
Q ss_pred ecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHccccHHHH
Q 011350 334 MPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAM 413 (488)
Q Consensus 334 ~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~~~l~~~ 413 (488)
+|+||++|||||++++|+||||+|||+||++||||||||+.|+||+|+.+++++++.++|+++++++++.|+++++|+++
T Consensus 314 ~~~dD~~dPI~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~~~~~ig~~~~~~~~~~~a~~l~~~l~~~~eL~~i 393 (469)
T 2c61_A 314 MPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSDQMYAGYAEGRDLRGL 393 (469)
T ss_dssp CCSCTTTSCCCCCGGGGTTEEEEBCHHHHHTTCSSCBCTTTCEETTGGGSCSTTTSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcCcchHHHHhhccCcEEEEcHHHHhCCCCCccCccccccccchhhcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred HHHhCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHHhcchhhhcCCChhhHhhhcccc
Q 011350 414 KAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRD 485 (488)
Q Consensus 414 ~~~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (488)
++|.|.+++++++++.++++++|++.||+|+++++.+++++++.+|++++.++.+++.+++++++++||+++
T Consensus 394 ~~~~G~~~l~d~~~~~l~~~~~i~~~fL~Q~~~~~~~~~et~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 465 (469)
T 2c61_A 394 VAIVGKEALSERDTKFLEFADLFEDKFVRQGRNENRTIEDTLEIGWQILTHLPENQLGRIDNKYIQKYHPAH 465 (469)
T ss_dssp HHHHCGGGSCHHHHHHHHHHHHHHHHTTCCCTTCCCCHHHHHHHHHHHHTTSCGGGCTTSCHHHHHHHSTTC
T ss_pred HhhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999997459999999999999999999999999999999999999999999864
No 4
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=100.00 E-value=1.9e-111 Score=893.76 Aligned_cols=421 Identities=23% Similarity=0.358 Sum_probs=397.6
Q ss_pred ccceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCeeeEe
Q 011350 17 VAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTP 96 (488)
Q Consensus 17 ~~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~Vp 96 (488)
..+.+|+|++|.|+++++.|++.+.+||+|+| ++| ..|+|++++++.+.+++|+++.||+. |++|.+||++++||
T Consensus 24 ~~~~~G~V~~v~g~i~~v~Gl~~~~~gElv~~--~~~--~~g~v~~l~~d~v~~~~~~~~~gi~~-G~~V~~tg~~~~Vp 98 (513)
T 3oaa_A 24 EAHNEGTIVSVSDGVIRIHGLADCMQGEMISL--PGN--RYAIALNLERDSVGAVVMGPYADLAE-GMKVKCTGRILEVP 98 (513)
T ss_dssp CCTTEEEEEEEETTEEEEEECTTCBTTCEEEE--TTT--EEEEEEEECSSCEEEEESSCCSSCCT-TCEEECCSCSSEEE
T ss_pred CceeEEEEEEEECcEEEEECCccCCcCCEEEE--CCC--CEEEEEEeeCCEEEEEEeCCccCCCC-CCEEEEcCCCCeEe
Confidence 45679999999999999999988999999999 444 58999999999999999999999995 99999999999999
Q ss_pred cCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCChhHH
Q 011350 97 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 176 (488)
Q Consensus 97 vG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt~L 176 (488)
||++|||||+|++|+|||+++++....++|+++.||+|++|.++++||+||||+||+|+|||||||+||||++|+|||+|
T Consensus 99 vG~~lLGRV~d~lG~PiDg~g~i~~~~~~pi~~~ap~~~~R~~v~epl~TGikaID~l~PigrGQR~~Ifg~~g~GKT~l 178 (513)
T 3oaa_A 99 VGRGLLGRVVNTLGAPIDGKGPLDHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTAL 178 (513)
T ss_dssp CSGGGTTCEEETTSCBTTCSCSCCCSCEEESSCCCCCSSSCCCCCCBCCCSCHHHHHHSCCBTTCBCEEEESSSSSHHHH
T ss_pred eCHHHhccchhhcCcCccCCCCCCccceeecccCCCCccccCCcCcccccceeeeccccccccCCEEEeecCCCCCcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHHHH
Q 011350 177 -AAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRI 255 (488)
Q Consensus 177 -l~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~~~ 255 (488)
+.+|+++.. .+++|||++||||.+++.++.+++.++|+|+||++|++|+|+||.+|+++||+
T Consensus 179 ~l~~I~n~~~-----------------~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~~~ 241 (513)
T 3oaa_A 179 AIDAIINQRD-----------------SGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPYA 241 (513)
T ss_dssp HHHHHHTTSS-----------------SSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHHhhcc-----------------CCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHHHH
Confidence 688888743 23479999999998777777888999999999999999999999999999999
Q ss_pred HHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccC-------------CC
Q 011350 256 ALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIE-------------GR 322 (488)
Q Consensus 256 a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~-------------~~ 322 (488)
|||+||||| |+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+++ ++
T Consensus 242 a~tiAEyfr-d~G~dVLli~Dsltr~A~A~REisl~lgepP~r~gYP~~vf~~~srLlERAg~~~~~~~~~~~~~~~~g~ 320 (513)
T 3oaa_A 242 GCAMGEYFR-DRGEDALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAARVNAEYVEAFTKGEVKGK 320 (513)
T ss_dssp HHHHHHHHH-HTTCEEEEEEETHHHHHHHHHHHHHHTTCCBCTTSCBTTHHHHHHHHHTTCSEECHHHHHHHHTTSCCSC
T ss_pred HHHHHHHHH-hcCCCEEEEecChHHHHHHHHHHHHhcCCCCcccCCCchhhhhcchHHHHHhhcccccchhccccccCCC
Confidence 999999999 8999999999999999999999999999999999999999999999999999973 34
Q ss_pred CcceeEEeEEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHH
Q 011350 323 KGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYA 402 (488)
Q Consensus 323 ~GSIT~i~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~ 402 (488)
+||||+||+|++|+||++||||++++|||||||||||+||++||||||||+.|+||+|+.++. ++|++++.+++.
T Consensus 321 ~GSITal~~V~~~~dD~s~pIp~~~~si~DGqIvLsr~La~~giyPAIdvl~SvSRv~~~~~~-----~~~~~va~~lr~ 395 (513)
T 3oaa_A 321 TGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETNLFNAGIRPAVNPGISVSRVGGAAQT-----KIMKKLSGGIRT 395 (513)
T ss_dssp CEEEEECCEEECGGGCCSSHHHHHHHHHSSEEEEECHHHHTTSCCSCBCTTTCEESSGGGGSC-----HHHHHHHHHHHH
T ss_pred CcceEEEEEEEcCCCCccCcchHhhhccCCeEEEEehhHHhCCCCCccCccccccccCccccc-----HHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999997653 689999999999
Q ss_pred HHHccccHHHHHHHhCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHHhcchh
Q 011350 403 NYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRE 468 (488)
Q Consensus 403 ~y~~~~~l~~~~~~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (488)
.|+++++++++.++ | +.++++++++++++++|+ .||+|+.+++.++++++..++++.+.++.+
T Consensus 396 ~la~y~el~~~~~~-g-~~ld~~~~~~l~~~~~i~-~fL~Q~~~~~~~~~e~~~~l~a~~~g~ld~ 458 (513)
T 3oaa_A 396 ALAQYRELAAFSQF-A-SDLDDATRKQLDHGQKVT-ELLKQKQYAPMSVAQQSLVLFAAERGYLAD 458 (513)
T ss_dssp HHHHHHHHHHHHTT-C-CSCCHHHHHHHHHHHHHH-HHTCCCSSCCCCTTHHHHHHHHHHSCTTTT
T ss_pred HHHHHHHHHHHHHh-h-ccCCHHHHHHHHHHHHHH-HHhCCCCCCCCCHHHHHHHHHHHhcCCCcc
Confidence 99999999999985 7 469999999999999996 899999999999999999999988877554
No 5
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=100.00 E-value=1.1e-110 Score=890.52 Aligned_cols=439 Identities=23% Similarity=0.336 Sum_probs=407.0
Q ss_pred ccCCccc-cceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEc
Q 011350 11 EEGTLEV-AMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFT 89 (488)
Q Consensus 11 ~~~~~~~-~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~t 89 (488)
+.|+..+ .+.+|+|++|.|+++++.|++.+.+||+|+|. ++| ..|+|++++++.+.+++|+++.||+. |++|.+|
T Consensus 29 ~~~~~~~~~~~~G~V~~V~g~iv~v~gl~~~~~gEl~~i~-~~g--~~g~v~~l~~~~v~~~~~~~~~gi~~-G~~V~~t 104 (515)
T 2r9v_A 29 KSFEEKIDLEDTGKVIQVGDGIARAYGLNKVMVSELVEFV-ETG--VKGVAFNLEEDNVGIIILGEYKDIKE-GHTVRRL 104 (515)
T ss_dssp CTTCCCSCTTTEEEEEEEETTEEEEEECTTCCTTEEEEET-TTC--CEEEEEECCTTCEEEEEESCCTTCCT-TCEEEEE
T ss_pred HhcCCCCcceeeeEEEEEECcEEEEecCCCCCCCCEEEEe-cCC--eEEEEEEecCCeEEEEEecCcccccC-CCEEEEe
Confidence 3454443 34799999999999999999889999999994 334 36999999999999999999999995 9999999
Q ss_pred CCeeeEecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCC
Q 011350 90 GEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAA 169 (488)
Q Consensus 90 g~~~~VpvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~ 169 (488)
|++++||||++|||||+|++|+|||+++++....++|+++.||+|++|.++++||+||||+||+|+|||||||+||||++
T Consensus 105 g~~~~vpvG~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~P~~~~R~~v~epl~TGiraID~l~PigrGQR~~I~g~~ 184 (515)
T 2r9v_A 105 KRIIEVPVGEELLGRVVNPLGEPLDGKGPINAKNFRPIEIKAPGVIYRKPVDTPLQTGIKAIDSMIPIGRGQRELIIGDR 184 (515)
T ss_dssp EEECEEEESGGGTTCEECTTSCBCSSSCCCCCSEEEESCCCCCCGGGBCCCCSEECCSCHHHHHHSCEETTCBEEEEEET
T ss_pred CCcceeecCccceeeEEcCCCCCcCCCCCCCccceeecccCCCCcccccCCCcchhcCccccccccccccCCEEEEEcCC
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred CCChhHH-HHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHH
Q 011350 170 GLPHNEI-AAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIE 248 (488)
Q Consensus 170 G~GKt~L-l~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~ 248 (488)
|+|||+| +.+|+++++ + +++|||++||||.+++.++.+++.++++|+||++|++|+|+||.+
T Consensus 185 g~GKT~Lal~~I~~~~~-------~----------dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~ 247 (515)
T 2r9v_A 185 QTGKTAIAIDTIINQKG-------Q----------GVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASL 247 (515)
T ss_dssp TSSHHHHHHHHHHTTTT-------T----------TEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHH
T ss_pred CCCccHHHHHHHHHhhc-------C----------CcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHH
Confidence 9999999 789988864 2 357999999999888888889999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCC--CCcce
Q 011350 249 RIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEG--RKGSI 326 (488)
Q Consensus 249 r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~--~~GSI 326 (488)
|+++||+|||+||||| |+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+++. .+|||
T Consensus 248 r~~a~~~a~tiAEyfr-d~G~dVLli~DslTr~A~A~REisl~lgepP~r~gYp~~vf~~~~rLlERAg~~~~~~~~GSI 326 (515)
T 2r9v_A 248 QYIAPYAGCAMGEYFA-YSGRDALVVYDDLSKHAVAYRQLSLLMRRPPGREAYPGDIFYLHSRLLERAVRLNDKLGGGSL 326 (515)
T ss_dssp HHHHHHHHHHHHHHHH-TTTCEEEEEEETHHHHHHHHHHHHHTSCCCTTCCCCCCCHHHHHHHHHTTCEEBCTTTTSCEE
T ss_pred HHHHHHHHHHHHHHHH-HcCCcEEEEeccHHHHHHHHHHHhhhcCCCCCcccCChhHHHHhHHHHHHHhhccccCCCcce
Confidence 9999999999999999 89999999999999999999999999999999999999999999999999999853 37999
Q ss_pred eEEeEEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHc
Q 011350 327 TQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAI 406 (488)
Q Consensus 327 T~i~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~ 406 (488)
|+||+|++|+||++||||++++|||||||+|||+||++||||||||+.|+||+|+.++ .++|++++.+++..|++
T Consensus 327 Tal~~v~~~~~D~s~pI~~~~~si~DGqI~Lsr~La~~g~yPAIdvl~SvSRv~~~~~-----~~~~~~~a~~lr~~la~ 401 (515)
T 2r9v_A 327 TALPIVETQANDISAYIPTNVISITDGQIYLEPGLFYAGQRPAINVGLSVSRVGGSAQ-----IKAMKQVAGMLRIDLAQ 401 (515)
T ss_dssp EEEEEEEESTTCTTSHHHHHHHHTSSEEEEBCHHHHHHTCSSCBCTTTCEEGGGTTTS-----CHHHHHHHHHHHHHHHH
T ss_pred EEeeeeeccCCCccccchhhhccccceEEEEchHHHhCCCCCeeccccccccCCcccC-----CHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999765 37999999999999999
Q ss_pred cccHHHHHHHhCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHHhcchhhhcCCChhhHhhhcc
Q 011350 407 GKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYS 483 (488)
Q Consensus 407 ~~~l~~~~~~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (488)
+++++++.+ +| +.++++++++++++++|+ .||+|+++++.++++++..+|++. +..+..+|.+.|.+|..
T Consensus 402 y~el~~~~~-~G-~~l~~~~~~~l~~~~~i~-~fL~Q~~~~~~~~~e~~~~l~~~~----~g~ld~i~~~~i~~~~~ 471 (515)
T 2r9v_A 402 YRELETFAQ-FA-TELDPATRAQIIRGQRLM-ELLKQEQYSPMPVEEQVVVLFAGV----RGYLDDLPVEEVRRFEK 471 (515)
T ss_dssp HHHHHTTGG-GC-SCCCHHHHHHHHHHHHHH-HHTCCCTTCCCCHHHHHHHHHHHH----TTTTTTSCGGGHHHHHH
T ss_pred hhHHHHHHH-hc-cCCCHHHHHHHHHHHHHH-HHhcCCCCCCCCHHHHHHHHHHHH----hhhhccccHHHHHHHHH
Confidence 999999977 48 569999999999999997 699999999999999999999985 44556778777777743
No 6
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=100.00 E-value=1e-110 Score=890.72 Aligned_cols=437 Identities=23% Similarity=0.352 Sum_probs=402.0
Q ss_pred cCCccc-cceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcC
Q 011350 12 EGTLEV-AMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTG 90 (488)
Q Consensus 12 ~~~~~~-~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg 90 (488)
.|+..+ .+.+|+|++|.|+++++.|++.+.+||+|+| .+| ..|+|++++++.+.+++|+++.||+. |++|.+||
T Consensus 18 ~~~~~~~~~~~G~V~~v~g~iv~v~gl~~~~~ge~~~i--~~g--~~g~v~~l~~~~v~~~~~~~~~gi~~-G~~V~~tg 92 (502)
T 2qe7_A 18 NYEADLEVVEVGTVIQVGDGIARVHGLEKVMAGELLEF--ENG--VMGMAQNLEEDNVGVVILGPYTEIRE-GTQVKRTG 92 (502)
T ss_dssp ---------CEEEEEEEETTEEEEECCTTCBTTEEEEE--TTS--CEEEEEEEETTEEEEEECSCCSSCCT-TCEEEEEE
T ss_pred hcCCCcceeEEEEEEEecCcEEEEEECCCCCCCCEEEE--CCC--CEEEEEEecCCeEEEEEecCccCCcC-CCEEEEeC
Confidence 344433 3479999999999999999988999999999 344 36999999999999999999999984 99999999
Q ss_pred CeeeEecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCC
Q 011350 91 EVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAG 170 (488)
Q Consensus 91 ~~~~VpvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G 170 (488)
++++||||++|||||+|++|+|||+++++....++|+++.||+|++|.++++||+||||+||+|+|||||||+||||++|
T Consensus 93 ~~~~vpvG~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~Ifg~~g 172 (502)
T 2qe7_A 93 RIMEVPVGEALLGRVVNPLGQPLDGRGPIETAEYRPIESPAPGVMDRKSVHEPLQTGIKAIDSMIPIGRGQRELIIGDRQ 172 (502)
T ss_dssp EESEEECSGGGTTCEECTTCCBSSCSCCCCCCCEEESSCCCCCTTSBCCCCSBCCCSCHHHHHSSCCBTTCBCEEEECSS
T ss_pred CcceEEcccccceEEEccCCCCCCCCCCCCCCceeeccCCCCCcccccCCCCccccceeecccccccccCCEEEEECCCC
Confidence 99999999999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred CChhHH-HHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHH
Q 011350 171 LPHNEI-AAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIER 249 (488)
Q Consensus 171 ~GKt~L-l~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r 249 (488)
+|||+| +.+|+++++ + +++|||++||||.+++.++.+++.++++|+||++|++|+|+||.+|
T Consensus 173 ~GKT~Lal~~I~~~~~-------~----------dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r 235 (502)
T 2qe7_A 173 TGKTTIAIDTIINQKG-------Q----------DVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLL 235 (502)
T ss_dssp SCHHHHHHHHHHGGGS-------C----------SEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHH
T ss_pred CCchHHHHHHHHHhhc-------C----------CcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHH
Confidence 999999 789988864 2 3579999999998888888899999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCC--CCccee
Q 011350 250 IITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEG--RKGSIT 327 (488)
Q Consensus 250 ~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~--~~GSIT 327 (488)
++++|+|||+||||| |+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+++. .+||||
T Consensus 236 ~~a~~~a~tiAEyfr-d~G~dVLl~~Dsltr~A~A~REisl~lgepP~~~gYpg~vf~~~~rL~ERAg~~~~~~~~GSIT 314 (502)
T 2qe7_A 236 YLAPYAGCAMGEYFM-YKGKHALVVYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDEKGGGSLT 314 (502)
T ss_dssp HHHHHHHHHHHHHHH-TTTCEEEEEEECHHHHHHHHHHHHTTTTCCCCSTTSCTTHHHHHHHHHTSCCBBCTTTTCCEEE
T ss_pred HHHHHHHHHHHHHHH-HcCCcEEEEEecHHHHHHHHHHHHHhcCCCCccCCCCchHHHHHHHHHHhhhcccccCCCccee
Confidence 999999999999999 89999999999999999999999999999999999999999999999999999853 479999
Q ss_pred EEeEEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHcc
Q 011350 328 QIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIG 407 (488)
Q Consensus 328 ~i~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~ 407 (488)
+||+|++++||++||||++++||+||||||||+||++||||||||+.|+||+|+.++ .++|++++.+++..|+++
T Consensus 315 al~~v~~~~dD~s~pI~~~~~si~DgqI~Lsr~La~~g~~PAIdvl~S~SRv~~~~~-----~~~~~~~a~~lr~~la~y 389 (502)
T 2qe7_A 315 ALPFIETQAGDVSAYIPTNVISITDGQIFLESDLFYSGVRPAVNVGISVSRVGGAAQ-----IKAMKKVAGTLRLDLAQY 389 (502)
T ss_dssp EEEEEECSTTCCSSHHHHHHHTTSSEEEEECHHHHTTTCSSCBCTTTCEESSGGGGS-----CHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEccCCCcccchhHHHhhhcCcEEEEehhHhhCCCCceeCcccccccCCCccC-----CHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999865 379999999999999999
Q ss_pred ccHHHHHHHhCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHHhcchhhhcCCChhhHhhhcc
Q 011350 408 KDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYS 483 (488)
Q Consensus 408 ~~l~~~~~~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (488)
++++++.+ +| +.++++++++++++++|+ .||+|+++++.++++++..+|++.+ ..+.++|.+.|.+|..
T Consensus 390 ~el~~~~~-~G-~~l~~~~~~~l~~~~~i~-~fL~Q~~~~~~~~~~~~~~l~~~~~----g~l~~i~~~~i~~~~~ 458 (502)
T 2qe7_A 390 RELQAFAQ-FG-SDLDKATQAKLNRGERTV-EILKQDEHKPMPVEEQVISIYAVTN----GFMDDIPVEDVRRFEE 458 (502)
T ss_dssp HHGGGSTT-CC-CCTTTTTTTTHHHHHHHH-HHHCCCTTCCCCHHHHHHHHHHHHT----TTTTSSCSTTHHHHHH
T ss_pred HHHHHHHH-hc-cCCCHHHHHHHHHHHHHH-HHhCCCCCCCCCHHHHHHHHHHHHh----hhhcCCCHHHHHHHHH
Confidence 99999966 48 568999999999999997 7999999999999999999999854 4455677777777643
No 7
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=100.00 E-value=3e-110 Score=888.49 Aligned_cols=445 Identities=24% Similarity=0.366 Sum_probs=405.1
Q ss_pred cCCccc-cceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcC
Q 011350 12 EGTLEV-AMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTG 90 (488)
Q Consensus 12 ~~~~~~-~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg 90 (488)
.|+..+ .+.+|+|++|.|+++++.|++.+.+||+|+| .+| ..|+|++++++++.+++|+++.||+ .|++|.+||
T Consensus 18 ~~~~~~~~~~~G~V~~v~g~iv~v~gl~~~~~ge~~~i--~~g--~~g~v~~l~~~~v~~~~~~~~~gi~-~G~~V~~tg 92 (510)
T 2ck3_A 18 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEF--SSG--LKGMSLNLEPDNVGVVVFGNDKLIK-EGDIVKRTG 92 (510)
T ss_dssp ------CCSSEEEEEEEETTEEEEEECTTCBTTCEEEE--TTS--CEEEEEEECSSCEEEEESSCGGGCC-TTCEEEECC
T ss_pred hcCCCcceeEEeEEEEEECcEEEEeeCCCCCCCCEEEE--CCC--CeEEEEeccCCeEEEEEECCccccc-CCCEEEEeC
Confidence 344433 3479999999999999999988999999999 344 3699999999999999999999998 499999999
Q ss_pred CeeeEecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCC
Q 011350 91 EVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAG 170 (488)
Q Consensus 91 ~~~~VpvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G 170 (488)
++++||||++|||||+|++|+|||+++++....++|+++.||+|++|.++++||+||||+||+|+|||||||++|||++|
T Consensus 93 ~~~~vpvg~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~I~g~~g 172 (510)
T 2ck3_A 93 AIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQ 172 (510)
T ss_dssp CCCEEEESGGGTTCEECTTSCBCSSSCCCCCSEEEESSCCCCCSTTBCCCCSBCCCSCHHHHHHSCCBTTCBCEEEESTT
T ss_pred CcceeecCccceeeEEccCCcCcCCCCCCCccceeecccCCCCcccccccCccccccceeeccccccccCCEEEEecCCC
Confidence 99999999999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred CChhHH-HHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHH
Q 011350 171 LPHNEI-AAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIER 249 (488)
Q Consensus 171 ~GKt~L-l~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r 249 (488)
+|||+| +.+|+++..++. +.+ ++.+++|||++||||.+++.++.+++.++++|+||++|++|+|+||.+|
T Consensus 173 ~GKT~Lal~~I~~q~~~~~---~~~------~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r 243 (510)
T 2ck3_A 173 TGKTSIAIDTIINQKRFND---GTD------EKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQ 243 (510)
T ss_dssp SSHHHHHHHHHHHTHHHHT---SCC------TTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHHH
T ss_pred CCchHHHHHHHHHHHhhcc---ccc------cCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHHH
Confidence 999999 889999875310 001 1123589999999998888888899999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCC--CCccee
Q 011350 250 IITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEG--RKGSIT 327 (488)
Q Consensus 250 ~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~--~~GSIT 327 (488)
++++|+|||+||||| |+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+++. .+||||
T Consensus 244 ~~a~~~a~tiAEyfr-d~G~dVLli~Dsltr~A~A~REisl~lgepP~r~gYpg~vf~~~~rLlERAg~~~~~~~~GSIT 322 (510)
T 2ck3_A 244 YLAPYSGCSMGEYFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLT 322 (510)
T ss_dssp HHHHHHHHHHHHHHH-TTTCEEEEEEETHHHHHHHHHHHHHHTTCCCCGGGCCTTHHHHHHHHHTTCEEBCGGGTSCEEE
T ss_pred HHHHHHHHHHHHHHH-HcCCcEEEEEcCHHHHHHHHHHHHHhcCCCCccCCcCchHHHhhHHHHHhhhcccccCCCccee
Confidence 999999999999999 89999999999999999999999999999999999999999999999999999853 479999
Q ss_pred EEeEEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHcc
Q 011350 328 QIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIG 407 (488)
Q Consensus 328 ~i~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~ 407 (488)
+||+|++|+||++||||++++|||||||||||+||++||||||||+.|+||+|+.++. ++|++++.+++..|+++
T Consensus 323 al~~v~~~~dD~s~pI~~~~~si~DgqI~Lsr~La~~gi~PAIdvl~SvSRv~~~~~~-----~~~~~~a~~lr~~la~y 397 (510)
T 2ck3_A 323 ALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQT-----RAMKQVAGTMKLELAQY 397 (510)
T ss_dssp EEEEEECSTTCTTSHHHHHHHHHSSEEEEBCHHHHHHTCSSCBCTTTCEESSGGGGSC-----HHHHHHHHHHHHHHHHH
T ss_pred EeeeeccCCCCccccchHhhhcccceEEEEehhHhhCCCCCcccchhcccccccccCC-----HHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999998653 79999999999999999
Q ss_pred ccHHHHHHHhCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHHhcchhhhcCCChhhHhhhcc
Q 011350 408 KDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYS 483 (488)
Q Consensus 408 ~~l~~~~~~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (488)
++++++.+ +| +.++++++++++++++|+ .||+|+++++.++++++..+|++.+. .+..++.+.|.+|..
T Consensus 398 ~el~~~~~-~G-~~l~~~~~~~l~~~~~i~-~fL~Q~~~~~~~~~~~~~~l~~~~~g----~l~~i~~~~i~~~~~ 466 (510)
T 2ck3_A 398 REVAAFAQ-FG-SDLDAATQQLLSRGVRLT-ELLKQGQYSPMAIEEQVAVIYAGVRG----YLDKLEPSKITKFEN 466 (510)
T ss_dssp HHHGGGSS-SC-SSSCHHHHHHHHHHHHHH-HTTCCCSSCCCCHHHHHHHHHHHHTT----SSTTSCGGGHHHHHH
T ss_pred hHHHHHHH-hc-CCCCHHHHHHHHHhHHHH-HHhcCCCCCCCCHHHHHHHHHHHHhh----hhcCCCHHHHHHHHH
Confidence 99999966 48 569999999999999997 69999999999999999999998554 455677777777743
No 8
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=100.00 E-value=8.3e-110 Score=883.01 Aligned_cols=421 Identities=24% Similarity=0.373 Sum_probs=392.6
Q ss_pred eeeEEEEEECCEEEEeccC--CCCCCcEEEEEeCC--Cc--eeEEEEEE-EECCeEEEEEccCCCCCccCCCEEEEcCCe
Q 011350 20 EYRTVTGVAGPLVILDKVK--GPKYYEIVNIRLGD--GT--MRRGQVLE-VDGEKAVVQVFEGTSGIDNKFTTVQFTGEV 92 (488)
Q Consensus 20 ~~G~V~~I~G~li~v~g~~--~~~igE~~~i~~~~--g~--~~~geVv~-~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~ 92 (488)
.+|+|++|.|++|+++++. .+.+|+.|+|...+ |. .+.+||++ ++++.+.+++|++++||+. |++|.+||++
T Consensus 19 ~~G~v~~V~G~vv~v~~~~~~~~~i~~~~~i~~~~~~g~~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~-G~~V~~tg~~ 97 (498)
T 1fx0_B 19 NLGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMSATDGLTR-GMEVIDTGAP 97 (498)
T ss_dssp CCEEEEEEETTEEEEECCSSCCCCTTCEEEECCCSSSSCCCCCEEEEEECCSSSCEEEEESSCCTTCCT-TCEEEECSSS
T ss_pred CCceEEEEEccEEEEEeCCCCccccccEEEEEeCCCCCcccceEEEEEEEecCCeEEEEEecCccCCCC-CCEEEecCCc
Confidence 3699999999999999884 47899999996433 33 46899999 8888888999999999994 9999999999
Q ss_pred eeEecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCC
Q 011350 93 LKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLP 172 (488)
Q Consensus 93 ~~VpvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~G 172 (488)
++||||++|||||+|++|+|||+.+++....++|+++.||+|++|.++++||+||||+||+|+|||||||+||||++|+|
T Consensus 98 ~~vpvG~~lLGRV~d~lG~PiD~~~~i~~~~~~pi~~~~p~~~~r~~~~e~l~TGirvID~l~pigkGqr~gIfgg~GvG 177 (498)
T 1fx0_B 98 LSVPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHRSAPAFTQLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVG 177 (498)
T ss_dssp CEEEESSTTTTCEECTTSCBCSSSSCCCCSEEEESCCCCCCGGGCCCCCCCCCCSCTTHHHHSCCCTTCCEEEEECSSSS
T ss_pred ceEecCccceeeEEcccccCCCCcCCcCCCceeccccCCCchhhhcccccccccceeEeeeecccccCCeEEeecCCCCC
Confidence 99999999999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcc-------eEEEEEeCCCCC
Q 011350 173 HNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSME-------RVTLFLNLANDP 245 (488)
Q Consensus 173 Kt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~-------~tvvv~~t~~~~ 245 (488)
||+|++||++|..+.+ +.+|||++||||.+++.++++++.+.++++ ||++|++|+|+|
T Consensus 178 KT~L~~~l~~~~a~~~---------------~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p 242 (498)
T 1fx0_B 178 KTVLIMELINNIAKAH---------------GGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 242 (498)
T ss_dssp HHHHHHHHHHHTTTTC---------------SSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSC
T ss_pred chHHHHHHHHHHHhhC---------------CCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCC
Confidence 9999999999853211 128999999999888888889999888887 999999999999
Q ss_pred HHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcc
Q 011350 246 TIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGS 325 (488)
Q Consensus 246 ~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GS 325 (488)
|++|++++|+|+|+|||||+++|+||||++||+||||+|+||||+++||||+++||||++|++|++||||||+ +++||
T Consensus 243 ~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~A~A~rEvs~~lge~Ps~~GYpp~l~~~l~~L~ERag~--~~~GS 320 (498)
T 1fx0_B 243 PGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITS--TKEGS 320 (498)
T ss_dssp HHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHHHHHHHHHHHHHTCCCCGGGCCTTHHHHHHHTSSSSSC--CTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHHHHHHHhhcCCCCccccCCchhhhHHHHHHHhccC--CCCCc
Confidence 9999999999999999999339999999999999999999999999999999999999999999999999997 56899
Q ss_pred eeEEeEEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHH
Q 011350 326 ITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYA 405 (488)
Q Consensus 326 IT~i~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~ 405 (488)
||+||+|++|+||++|||||++++|+||||+|||+||++||||||||+.|+||+|+. ++++++|+++++++++.|+
T Consensus 321 IT~i~tV~v~~dD~tdPi~d~~~~ilDG~ivLsR~La~~giyPAID~l~S~SR~~~~----~i~~~~h~~~a~~lr~~la 396 (498)
T 1fx0_B 321 ITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQP----RIVGEEHYEIAQRVKETLQ 396 (498)
T ss_dssp ECCEEEEECGGGCSSSHHHHHHHTTCSEEEEBCSTTTTTTCSSCBCSSSCCBTTCST----TTTCHHHHHHHHHHHHHHH
T ss_pred eeeeEEEEccCCCcCCcchHHHHHhhCceEEehhhHHhCCCCceeccccccccCCCc----ccCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999975 3456899999999999999
Q ss_pred ccccHHHHHHHhCCcCCCHHHHHHHHHHhHHHHHHhccCCC----------CCCCHHHHHHHHHHHHH
Q 011350 406 IGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAY----------DSRNIFQSLDLAWTLLR 463 (488)
Q Consensus 406 ~~~~l~~~~~~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~----------~~~~~~~~~~~~~~~~~ 463 (488)
++++++++.++.|.|+++++++++++++++|+ +||+|+++ +..++++++..+.++++
T Consensus 397 ~y~el~~li~i~G~d~ls~~d~~~l~~~~~i~-~fL~Q~~~v~e~ft~~~g~~v~~~~t~~~l~~il~ 463 (498)
T 1fx0_B 397 RYKELQDIIAILGLDELSEEDRLTVARARKIE-RFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILS 463 (498)
T ss_dssp HHHHHHHHHHHHCSTTSCTTTHHHHHHHHHHH-HHTCCCCSSCTTTSCSCCCCCCHHHHHHHHHTTTT
T ss_pred hhHHHHHHHHHhCCCcCCHHHHHHHHHHHHHH-HHHcCCchHHHHhhcCCCcccCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999997 89999977 78899999999999876
No 9
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=100.00 E-value=2.4e-110 Score=888.72 Aligned_cols=437 Identities=25% Similarity=0.337 Sum_probs=403.3
Q ss_pred cCCccc-cceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcC
Q 011350 12 EGTLEV-AMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTG 90 (488)
Q Consensus 12 ~~~~~~-~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg 90 (488)
.|+..+ .+.+|+|++|.|+++++.|++.+.+||+|+| .+| ..|+|++++++++.+++|+++.||+. |++|.+||
T Consensus 19 ~~~~~~~~~~~G~V~~v~g~iv~v~gl~~~~~ge~~~i--~~g--~~g~v~~l~~~~v~~~~~~~~~gi~~-G~~V~~tg 93 (507)
T 1fx0_A 19 GYNREVKVVNTGTVLQVGDGIARIHGLDEVMAGELVEF--EEG--TIGIALNLESNNVGVVLMGDGLMIQE-GSSVKATG 93 (507)
T ss_dssp ------CTTTEEEECCCCSSEEEEEECTTCCTTCCEEE--TTC--CEEEEEEECSSEEEEEECSCGGGCCT-TCEEECCC
T ss_pred hccCCcceeEEEEEEEEeCCEEEEEECCCccCCCEEEE--CCC--ceEEEEeccCCeEEEEEecCccCCcC-CCEEEEeC
Confidence 344433 3479999999999999999988999999999 344 36999999999999999999999995 99999999
Q ss_pred CeeeEecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCC
Q 011350 91 EVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAG 170 (488)
Q Consensus 91 ~~~~VpvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G 170 (488)
++++||||++|||||+|++|+|||+++++....++|+++.||+|++|.++++||+||||+||+|+|||||||+||||++|
T Consensus 94 ~~~~vpvG~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~Ifg~~g 173 (507)
T 1fx0_A 94 RIAQIPVSEAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQ 173 (507)
T ss_dssp CCCEEEESSSCSSCCCCSSSCCSSSSCCCCCSEEEESSCCCCCSSSBCCCCSBCCCSCTTTTTTSCCBTTCBCBEEESSS
T ss_pred CcceeecCccceeEEEccCCcCCCCCCCCCCCceeeccCCCCCcccccccCCcccccceecccccccccCCEEEEecCCC
Confidence 99999999999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred CChhHH-HHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHH
Q 011350 171 LPHNEI-AAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIER 249 (488)
Q Consensus 171 ~GKt~L-l~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r 249 (488)
+|||+| +.+|+++++ .+++|||++||||.+++.++.+++.++++|+||++|++|+|+||.+|
T Consensus 174 ~GKT~Lal~~I~~~~~-----------------~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r 236 (507)
T 1fx0_A 174 TGKTAVATDTILNQQG-----------------QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQ 236 (507)
T ss_dssp SSHHHHHHHHHHTCCT-----------------TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGT
T ss_pred CCccHHHHHHHHHhhc-----------------CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHH
Confidence 999999 789988753 23589999999998888888899999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCC--CCccee
Q 011350 250 IITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEG--RKGSIT 327 (488)
Q Consensus 250 ~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~--~~GSIT 327 (488)
++++|+|||+||||| |+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+++. .+||||
T Consensus 237 ~~a~~~a~tiAEyfr-d~G~dVLli~Dsltr~A~A~REisl~lge~P~~~gYp~~vf~~~srLlERAg~~~~~~~~GSIT 315 (507)
T 1fx0_A 237 YLAPYTGAALAEYFM-YRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSLLGEGSMT 315 (507)
T ss_dssp THHHHHHHHHHHHHH-HTTCEEEEEEECHHHHHHHHHHHHHHTTCCCCGGGCCSCSSTTTTTTGGGCCBBCTTTTSCEEE
T ss_pred HHHHHHHHHHHHHHH-HcCCcEEEEEecHHHHHHHHHHHHHhcCCCCccccCCchHhhhhHHHHHhhhhccccCCCccee
Confidence 999999999999999 89999999999999999999999999999999999999999999999999999853 479999
Q ss_pred EEeEEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHcc
Q 011350 328 QIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIG 407 (488)
Q Consensus 328 ~i~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~ 407 (488)
+||+|++|+||++||||++++||+||||||||+||++||||||||+.|+||+|+.++ .++|++++.+++..|+++
T Consensus 316 al~~v~~~~~D~s~pI~~~~~si~DgqIvLsr~La~~g~yPAIdvl~S~SR~~~~~~-----~~~~~~~a~~lr~~la~y 390 (507)
T 1fx0_A 316 ALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQ-----IKAMKKVAGKLKLELAQF 390 (507)
T ss_dssp ECCEEECSTTCTTSHHHHHHHTTSSCBCCCCSSSSSSSCSSCCCTTTCCCTTGGGGS-----CHHHHHHHHHHHHHHHHH
T ss_pred eeeeeeccCCCcccchHHHHHhhcCcEEEEehhHhhCCCCCccchhhhhccccccCC-----CHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999865 379999999999999999
Q ss_pred ccHHHHHHHhCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHHhcchhhhcCCChhhHhhhcc
Q 011350 408 KDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYS 483 (488)
Q Consensus 408 ~~l~~~~~~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (488)
++++++.+ +| +.++++++++++++++|+ .||+|+++++.++++++..+|.+.+ ..+.+++.+.|.+|..
T Consensus 391 ~el~~~~~-~G-~~l~~~~~~~l~~~~~i~-~fL~Q~~~~~~~~~e~~~~l~~~~~----g~l~~i~~~~i~~~~~ 459 (507)
T 1fx0_A 391 AELEAFAQ-FA-SDLDKATQNQLARGQRLR-ELLKQPQSAPLTVEEQVMTIYTGTN----GYLDSLELDQVRKYLV 459 (507)
T ss_dssp HHHTTTGG-GC-SSCCHHHHHHHHHHHHHH-HHHCCCTTCCCCHHHHHHHHHHHHT----TSSSSSCHHHHHHHHH
T ss_pred hHHHHHHH-hc-cCCCHHHHHHHHHHHHHH-HHHCCCCCCCCCHHHHHHHHHHHhh----chhcCCCHHHHHHHHH
Confidence 99999976 48 569999999999999997 7999999999999999999999854 4455678777777643
No 10
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=100.00 E-value=2e-108 Score=869.41 Aligned_cols=430 Identities=25% Similarity=0.367 Sum_probs=396.1
Q ss_pred eeeEEEEEECCEEEEecc-CCCCCCcEEEEEeCCCceeEEEEEE-EECCeEEEEEccCCCCCccCCCEEEEcCCeeeEec
Q 011350 20 EYRTVTGVAGPLVILDKV-KGPKYYEIVNIRLGDGTMRRGQVLE-VDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPV 97 (488)
Q Consensus 20 ~~G~V~~I~G~li~v~g~-~~~~igE~~~i~~~~g~~~~geVv~-~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~Vpv 97 (488)
.+|+|++|.|++|++++. ..+.+++.|+|.. .+..+.+||++ ++++.+.+++|+++.||+. |++|.+||++++|||
T Consensus 13 ~~G~v~~v~G~vv~v~~~~~~~~i~~~~~i~~-~~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~-G~~V~~tg~~~~vpv 90 (482)
T 2ck3_D 13 TTGRIVAVIGAVVDVQFDEGLPPILNALEVQG-RETRLVLEVAQHLGESTVRTIAMDGTEGLVR-GQKVLDSGAPIRIPV 90 (482)
T ss_dssp CEEEEEEEETTEEEEEESSCCCCTTCEEEESS-CSSCCEEEEEEEEETTEEEEEESSCCTTCBT-TCEEEECSSSCEEEC
T ss_pred cceEEEEEEccEEEEEecCccCcccceEEEee-CCCcEEEEEeEEecCCeEEEEeccCccCCCC-CCEEEEcCCcceeec
Confidence 589999999999999985 5678999999853 24456899999 8899999999999999995 999999999999999
Q ss_pred CccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCChhHHH
Q 011350 98 SLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 177 (488)
Q Consensus 98 G~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt~Ll 177 (488)
|++|||||+|++|+|||+.+++....++|+++.||+|++|.++++||+||||+||+|+|||||||+||||++|+|||+|+
T Consensus 91 G~~lLGRV~d~lG~PiDg~~~~~~~~~~pi~~~~P~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~Ifgg~G~GKT~L~ 170 (482)
T 2ck3_D 91 GPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLI 170 (482)
T ss_dssp SGGGBTCEECTTSCBCSSSCSCCCCCEEESCCCCCCGGGCCCCCCEECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHH
T ss_pred cccccCCEEcccCcCcCCcCCCCccccccccccCCchHHhcccCcCCccceEEEecccccccCCeeeeecCCCCChHHHH
Confidence 99999999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcc------eEEEEEeCCCCCHHHHHh
Q 011350 178 AQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSME------RVTLFLNLANDPTIERII 251 (488)
Q Consensus 178 ~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~------~tvvv~~t~~~~~~~r~~ 251 (488)
+||+++..+.+ ..+|||++||||.+++.++++++.+.++++ ||++|++|+|+||++|++
T Consensus 171 ~~i~~~~~~~~---------------~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~~r~~ 235 (482)
T 2ck3_D 171 MELINNVAKAH---------------GGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARAR 235 (482)
T ss_dssp HHHHHHTTTTC---------------SSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHHHHHH
T ss_pred HHHHHhhHhhC---------------CCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCHHHHHH
Confidence 99999853211 138999999999888888888888888887 999999999999999999
Q ss_pred HHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeE
Q 011350 252 TPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPI 331 (488)
Q Consensus 252 a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~ 331 (488)
++|+|+|+|||||+++|+|||+++||+||||+|+||||+++||||+++||||++|+.|++||||||+ .++||||+|++
T Consensus 236 ~~~~a~tiAEyfrd~~G~dVLll~DsitR~A~A~rEis~~lge~P~~~GYpp~l~~~l~~l~ERag~--~~~GSIT~i~t 313 (482)
T 2ck3_D 236 VALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITT--TKKGSITSVQA 313 (482)
T ss_dssp HHHHHHHHHHHHHHTTCSCEEEEEECTHHHHHHHHHHHGGGTCCCCGGGCCTTHHHHHHHHHTTSSC--CSSCCEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHHHHHhhhhcCCCCccccCchhHHHHhHHHHHhhcC--CCCCceeeeEE
Confidence 9999999999999339999999999999999999999999999999999999999999999999996 46899999999
Q ss_pred EeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHccccHH
Q 011350 332 LTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQ 411 (488)
Q Consensus 332 v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~~~l~ 411 (488)
|++|+||++|||||++++|+||||+|||+||++||||||||+.|+||+|+. ++++++|+++++++++.|+++++++
T Consensus 314 v~v~~dD~tdPi~d~~~~i~dG~ivLsr~La~~giyPAIDvl~S~SR~~~~----~i~~~~~~~~a~~lr~~la~y~el~ 389 (482)
T 2ck3_D 314 IYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDP----NIVGSEHYDVARGVQKILQDYKSLQ 389 (482)
T ss_dssp EECGGGCTTSHHHHHHGGGCSEEEEBCHHHHTTTCSSCBCTTSCEETTCSH----HHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCCccHHHHHHhcCeEEEEcHHHHhCCCCCccCcccccccCCCc----ccCCHHHHHHHHHHHHHHHhhhHHH
Confidence 999999999999999999999999999999999999999999999999965 2455899999999999999999999
Q ss_pred HHHHHhCCcCCCHHHHHHHHHHhHHHHHHhccCCC----------CCCCHHHHHHHHHHHHHh----cchhhhcCC
Q 011350 412 AMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAY----------DSRNIFQSLDLAWTLLRI----FPRELLHRI 473 (488)
Q Consensus 412 ~~~~~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~----------~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 473 (488)
++.++.|.++++++++++++++++|+ +||+|+++ +..++++++..+.++++. +|...++++
T Consensus 390 ~li~i~G~~~l~~~d~~~l~~~~~i~-~fL~Q~~~v~~~f~~~~g~~~~~~~t~~~l~~il~g~~d~~pe~~~~~~ 464 (482)
T 2ck3_D 390 DIIAILGMDELSEEDKLTVSRARKIQ-RFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMV 464 (482)
T ss_dssp HHHHHHCGGGSCHHHHHHHHHHHHHH-HHTCCCCGGGHHHHSSCCCCCCHHHHHHHHHHHHTTTTTTSCGGGGTTC
T ss_pred HHHHHhCCCcCCHHHHHHHHHHHHHH-HHHcCCchHHHHhhcCccccCCHHHHHHHHHHHhcccccCCCHHHhcCc
Confidence 99999999999999999999999997 89999976 888999999999999862 344444443
No 11
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=100.00 E-value=2e-108 Score=880.24 Aligned_cols=422 Identities=26% Similarity=0.412 Sum_probs=376.7
Q ss_pred cceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCeeeEec
Q 011350 18 AMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPV 97 (488)
Q Consensus 18 ~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~Vpv 97 (488)
.+..|+|++|.|++|+++|+..+.+||+|+|. + ..+.|||++++++.+.+|+|++++||++ |++|.+||++++|||
T Consensus 7 ~m~~G~V~~V~G~vv~v~g~~~~~~gE~v~v~--~-~~l~gEVi~~~~d~a~i~v~e~t~Gl~~-G~~V~~tG~~lsV~v 82 (600)
T 3vr4_A 7 GMQIGKIIKVSGPLVMAENMSEASIQDMCLVG--D-LGVIGEIIEMRQDVASIQVYEETSGIGP-GEPVRSTGEALSVEL 82 (600)
T ss_dssp CCCCEEEEEEETTEEEEESCTTSCTTCEEEET--T-TTEEEEEEEEETTEEEEEESSCCTTCCT-TCEEEECSSSSEEEE
T ss_pred CCcceEEEEEECcEEEEEcCCCCccCCEEEEC--C-CcEEEEEEEEcCCcEEEEEccCCCCCCC-CCEEEECCCCCEEEe
Confidence 34479999999999999999889999999992 2 3478999999999999999999999996 999999999999999
Q ss_pred CccccceEecCCCcccCCC----C-----------CCCCCce--------------------------------------
Q 011350 98 SLDMLGRIFNGSGKPIDNG----P-----------PILPEAY-------------------------------------- 124 (488)
Q Consensus 98 G~~lLGRVlD~lG~PlDg~----~-----------~~~~~~~-------------------------------------- 124 (488)
|++|||||+|++|||||+. + ++...+.
T Consensus 83 G~~lLGrV~DglGrPlD~~~~~~g~~~~~~g~~~~~l~~~~~w~f~p~~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~ 162 (600)
T 3vr4_A 83 GPGIISQMFDGIQRPLDTFMEVTQSNFLGRGVQLPALDHEKQWWFEATIEEGTEVSAGDIIGYVDETKIIQHKIMVPNGI 162 (600)
T ss_dssp STTCTTCEECTTCCBHHHHHHHHCSSBCCTTCCCCSSCSSCCEEEEECSCTTCEECTTCEEEEEECSSSCEEEEECCTTC
T ss_pred CHHHHhhhhCcCCCcccccccccCccccccCCcCCCCCcccccccCcccccCCEecCCceEEEEecCCceeeeeecCCCC
Confidence 9999999999999999986 3 2221111
Q ss_pred -----------------------------------eeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCC
Q 011350 125 -----------------------------------LDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAA 169 (488)
Q Consensus 125 -----------------------------------~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~ 169 (488)
||++ .|++.++|.++++||+||||+||+|+|||||||++|||++
T Consensus 163 ~g~v~~i~~g~~~v~~~v~~i~~~~g~~~i~~~~~wpv~-~~~p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifgg~ 241 (600)
T 3vr4_A 163 KGTVQKIESGSFTIDDPICVIETEQGLKELTMMQKWPVR-RGRPIKQKLNPDVPMITGQRVIDTFFPVTKGGAAAVPGPF 241 (600)
T ss_dssp CEEEEEECCEEECTTSCCEEEEETTEEEEECSCEEEETT-SCCCCSEEECCCSBCCCCCHHHHHHSCCBTTCEEEEECCT
T ss_pred CceEEEecCCcceeceeEEEEeccCCccccccccccccc-CCCchhhccCCCceecccchhhhccCCccCCCEEeeecCC
Confidence 2222 2344557999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhcc-------CCCcceEEEEEeCC
Q 011350 170 GLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEE-------NGSMERVTLFLNLA 242 (488)
Q Consensus 170 G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~-------~~~~~~tvvv~~t~ 242 (488)
|+|||+|+++|++|+. +| +|||++||||.+++.++.++|++ +++|+||++|++|+
T Consensus 242 g~GKT~L~~~ia~~~~-------~~-----------v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~rtvvV~~ts 303 (600)
T 3vr4_A 242 GAGKTVVQHQIAKWSD-------VD-----------LVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERTVLIANTS 303 (600)
T ss_dssp TSCHHHHHHHHHHHSS-------CS-----------EEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGGEEEEEEET
T ss_pred CccHHHHHHHHHhccC-------CC-----------EEEEEEecccHHHHHHHHHHHHhhcccccccccccceEEEEECC
Confidence 9999999999999864 45 99999999997666666777754 56899999999999
Q ss_pred CCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccC--
Q 011350 243 NDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIE-- 320 (488)
Q Consensus 243 ~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~-- 320 (488)
|+||++|++++|+|+|+||||| |+|+|||+++||+||||+|+||||+++||||+++|||||+|++|++||||||+++
T Consensus 304 d~p~~~R~~~~~~altiAEyfr-d~G~dVLl~~Ds~tR~A~A~rEiS~~lge~P~~~GYp~~l~s~L~~l~ERAg~~~~~ 382 (600)
T 3vr4_A 304 NMPVAAREASIYTGITIAEYFR-DMGYDVAIMADSTSRWAEALREMSGRLEEMPGDEGYPAYLGSRLAEYYERSGRVIAL 382 (600)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHH-TTTCEEEEEEECHHHHHHHHHHHHHHTTCCBCGGGCBTTHHHHHHHHHTTSEEEECS
T ss_pred CCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEEecchHHHHHHHHHHHhccCCCCccccCCchhhhHHHHHHHhhcccccc
Confidence 9999999999999999999999 8999999999999999999999999999999999999999999999999999874
Q ss_pred ---CCCcceeEEeEEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCccccccccccc--ccccccHHH
Q 011350 321 ---GRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGE--GMTRRDHSD 395 (488)
Q Consensus 321 ---~~~GSIT~i~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~--~~~~~~h~~ 395 (488)
+++||||+|++|++|+||++||||+++++|+||||+|||+||++||||||||+.|+||+|+.+..+ .+++++|++
T Consensus 383 ~~~~~~GSIT~i~~v~~~gdD~tdPi~~~t~~i~dg~ivLsr~La~~giyPAId~l~S~SR~~~~l~~~~~~~~~~~h~~ 462 (600)
T 3vr4_A 383 GSDQREGSITAISAVSPSGGDISEPVTQNTLRVVKVFWGLDSSLAQKRHFPSINWIQSYSLYSTEVGRYMDQILQQDWSD 462 (600)
T ss_dssp STTCCEEEEEEEEEECCSSSCTTSHHHHHHHTTCCEECCBCHHHHTTTCSSCBCTTTCEETTHHHHHHHHHHHHTSCHHH
T ss_pred CCCCCCcceEEEEEEECCCCCCCCcchhhhhhhccEEEEEhhhHHhCCCCCccCcccchhhhcccccccccccCCHHHHH
Confidence 468999999999999999999999999999999999999999999999999999999999964311 135689999
Q ss_pred HHHHHHHHHHccccHHHHHHHhCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHH
Q 011350 396 VSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLR 463 (488)
Q Consensus 396 ~~~~l~~~y~~~~~l~~~~~~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~ 463 (488)
+++++++.|+++++++++.+++|.|+||++|++.++++++|++.||+|++|++++.++++++.+.+|+
T Consensus 463 ~a~~~~~~la~~~el~~ii~i~G~d~Ls~~dk~~l~~a~~i~e~fL~Q~~f~~~d~~~~~~kq~~~l~ 530 (600)
T 3vr4_A 463 MVTEGMRILQEEEQLNEIVRLVGIDSLSDNDRLTLEVAKSIREDYLQQNAFDDVDTFTSREKQFNMLK 530 (600)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHHHHHHHTTCCCTTSTTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHHHHhCCCCCcCCccccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999878999999888544444444444444
No 12
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=100.00 E-value=2e-108 Score=877.20 Aligned_cols=419 Identities=25% Similarity=0.393 Sum_probs=374.8
Q ss_pred eeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCeeeEecCcc
Q 011350 21 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLD 100 (488)
Q Consensus 21 ~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~VpvG~~ 100 (488)
.|+|++|.|++|+++|+..+.+||+|+|. + ..+.|||++++++.+.+|+|++++||++ |++|.+||++++||||++
T Consensus 3 ~G~V~~V~G~vv~v~g~~~~~~gE~v~v~--~-~~l~gEVi~~~~d~~~i~v~e~t~Gl~~-G~~V~~tg~~l~V~vG~~ 78 (578)
T 3gqb_A 3 QGVIQKIAGPAVIAKGMLGARMYDISKVG--E-EGLVGEIIRLDGDTAFVQVYEDTSGLKV-GEPVVSTGLPLAVELGPG 78 (578)
T ss_dssp EEEEEEEETTEEEEESCTTCCTTEEEEET--T-TTEEEEEEEEETTEEEEEESSCCTTCCT-TCEEEEEEEESEEEESTT
T ss_pred eeEEEEEECCEEEEEcCCCCccCCEEEEC--C-CcEEEEEEEEcCCcEEEEEcCCCCCCCC-CCEEEECCCCCEEEeCHH
Confidence 69999999999999999889999999992 2 3478999999999999999999999996 999999999999999999
Q ss_pred ccceEecCCCcccCCC----CC----------CCCCce------------------------------------------
Q 011350 101 MLGRIFNGSGKPIDNG----PP----------ILPEAY------------------------------------------ 124 (488)
Q Consensus 101 lLGRVlD~lG~PlDg~----~~----------~~~~~~------------------------------------------ 124 (488)
|||||+|++|||||+. ++ +...+.
T Consensus 79 lLGrV~DglG~PlD~~~~~~g~~~~~g~~~~~l~~~~~w~f~p~~~~g~~v~~G~i~g~v~e~~~ih~i~~pp~~~g~v~ 158 (578)
T 3gqb_A 79 MLNGIYDGIQRPLERIREKTGIYITRGVVVHALDREKKWAWTPMVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVK 158 (578)
T ss_dssp CTTCEECTTSCBHHHHHHHHCSBCCTTCCCCSSCSSSCEEEEECCCTTCEECTTCEEEEEEETTEEEEEECCTTCCEEEE
T ss_pred HhhhhhCcCCCcccccccccCccccccccCCCcCcccccccccccccCccccccceeeeecccccceecccCCCcCceeE
Confidence 9999999999999987 21 221111
Q ss_pred ----------------------------eeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCChhHH
Q 011350 125 ----------------------------LDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 176 (488)
Q Consensus 125 ----------------------------~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt~L 176 (488)
||++. |+++++|.++++||+||||+||+|+|||||||++|||++|+|||+|
T Consensus 159 ~i~~~G~~~v~~~i~~~~~g~~i~~~~~wPv~~-~~p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifg~~g~GKT~l 237 (578)
T 3gqb_A 159 EVKPAGEYTVEEPVVVLEDGTELKMYHTWPVRR-ARPVQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKSVT 237 (578)
T ss_dssp EECCSEEECTTSCSEEETTCCEECSCEEEETTS-CCCCSEEECSCSEECCSCHHHHTTSCEETTCEEEECCCTTSCHHHH
T ss_pred EeccCCcccccceeEEeecCccccccccccccC-CCChHHhccCCCcccccchhhhhcccccCCCEEeeeCCCCccHHHH
Confidence 22221 2345589999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhcc-------CCCcceEEEEEeCCCCCHHHH
Q 011350 177 AAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEE-------NGSMERVTLFLNLANDPTIER 249 (488)
Q Consensus 177 l~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~-------~~~~~~tvvv~~t~~~~~~~r 249 (488)
+++|++|+. +| +|||++||||.+++.++.++|++ +++|+||++|++|+|+||++|
T Consensus 238 ~~~ia~~~~-------~~-----------v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~~~rtvvv~~tsd~p~~~R 299 (578)
T 3gqb_A 238 QQSLAKWSN-------AD-----------VVVYVGSGERGNEMTDVLVEFPELTDPKTGGPLMHRTVLIANTSNMPVAAR 299 (578)
T ss_dssp HHHHHHHSS-------CS-----------EEEEEEEEECHHHHHHHHTTGGGCBCTTTSSBSGGGEEEEEEETTSCHHHH
T ss_pred HHHHHhccC-------CC-----------EEEEEEecccHHHHHHHHHHHHhhcccccccccccceEEEEECCCCCHHHH
Confidence 999999864 45 99999999997777767788754 568999999999999999999
Q ss_pred HhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccC---CCCcce
Q 011350 250 IITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIE---GRKGSI 326 (488)
Q Consensus 250 ~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~---~~~GSI 326 (488)
++++|+|+|+||||| |+|+|||+++||+||||+|+||||+++||||+++|||||+|++|++||||||+++ +++|||
T Consensus 300 ~~~~~~altiAEyfr-d~G~dVLl~~Ds~tR~A~A~rEis~~lge~P~~~GYp~~l~s~l~~l~ERAg~~~~~~~~~GSI 378 (578)
T 3gqb_A 300 EASIYVGVTIAEYFR-DQGFSVALMADSTSRWAEALREISSRLEEMPAEEGYPPYLAARLAAFYERAGKVITLGGEEGAV 378 (578)
T ss_dssp HHHHHHHHHHHHHHH-HTTCEEEECCSCHHHHHHHHHHHHHHTTCCCCSSSSCTTHHHHHHHHHTTCEEEECTTSCEEEE
T ss_pred HHHHHHHHHHHHHHH-HcCCCEEEEecChHHHHHHHHHHHHhccCCCccccCCchhhhHHHHHHHhhcCcccCCCCCcce
Confidence 999999999999999 8999999999999999999999999999999999999999999999999999985 468999
Q ss_pred eEEeEEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCccccccccccc--ccccccHHHHHHHHHHHH
Q 011350 327 TQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGE--GMTRRDHSDVSNQLYANY 404 (488)
Q Consensus 327 T~i~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~--~~~~~~h~~~~~~l~~~y 404 (488)
|++++|++|+||++|||++++++|+||||+|||+||++||||||||+.|+||+|+.+..+ .+++++|+++++++++.|
T Consensus 379 T~i~~v~~~gdD~tdPi~~~t~~i~dg~ivLsr~La~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~h~~~a~~~~~~l 458 (578)
T 3gqb_A 379 TIVGAVSPPGGDMSEPVTQSTLRIVGAFWRLDASLAFRRHFPAINWNGSYSLFTSALDPWYRENVAEDYPELRDAISELL 458 (578)
T ss_dssp EEEEECCCTTTCTTSHHHHHHHTTCSEECCBCHHHHHHTCSSCBCTTTCEESSHHHHHHHHHHHTCTTHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCCCCcchHHHhhhcCceEEECHHHHhCCCCCCcCcccchhhccccccccccccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999964311 135689999999999999
Q ss_pred HccccHHHHHHHhCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHH
Q 011350 405 AIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLR 463 (488)
Q Consensus 405 ~~~~~l~~~~~~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~ 463 (488)
+++++++++.+++|.|+||++|++.++++++|++.||+|++|++.+.++++++.+.+|+
T Consensus 459 ~~~~el~~ii~i~G~d~Ls~~dk~~l~~a~~i~~~fL~Q~~f~~~d~~~~~~kq~~~l~ 517 (578)
T 3gqb_A 459 QREAGLQEIVQLVGPDALQDAERLVIEVGRIIREDFLQQNAYHEVDAYSSMKKAYGIMK 517 (578)
T ss_dssp HHHHTTTTTTTTTTGGGCCHHHHHHHHHHHHHHHHHTCCCSSSTTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHHHHhCCCCCCCCceecCCHHHHHHHHH
Confidence 99999999999999999999999999999999878999999888544444444444433
No 13
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=100.00 E-value=4.1e-109 Score=882.50 Aligned_cols=420 Identities=26% Similarity=0.399 Sum_probs=308.5
Q ss_pred eeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCeeeEecCc
Q 011350 20 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSL 99 (488)
Q Consensus 20 ~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~VpvG~ 99 (488)
..|+|++|.|++++++|+..+.+||+|+|.. ..+.|||++|++|.+.+|+|+++.||++ |++|.+||++++||||+
T Consensus 3 ~~G~V~~V~G~iv~~~g~~~~~~gElv~v~~---~~l~geVi~l~~d~~~i~v~e~t~Gi~~-G~~V~~tg~~lsV~vG~ 78 (588)
T 3mfy_A 3 AKGRIIRVTGPLVVADGMKGAKMYEVVRVGE---LGLIGEIIRLEGDKAVIQVYEETAGVRP-GEPVVGTGASLSVELGP 78 (588)
T ss_dssp -------------------------------------------------------------C-CCCCSSSSSCCEEEEST
T ss_pred ceeEEEEEECCEEEEEcCCCCccCCEEEEcC---CceEEEEEEecCCeEEEEEccCCCCCCC-CCEEEEcCCCCEEEeCH
Confidence 5799999999999999998899999999942 3478999999999999999999999996 99999999999999999
Q ss_pred cccceEecCCCcccCCCCCCCC--------------C-------------------------------------------
Q 011350 100 DMLGRIFNGSGKPIDNGPPILP--------------E------------------------------------------- 122 (488)
Q Consensus 100 ~lLGRVlD~lG~PlDg~~~~~~--------------~------------------------------------------- 122 (488)
+|||||+|++|||||+.++..+ .
T Consensus 79 gLLGrV~DglgrPLd~~~~~~g~~~~~g~~~~~l~~~~~w~f~p~~~~gd~v~~G~i~g~v~e~~~~~~~imvpp~~~g~ 158 (588)
T 3mfy_A 79 RLLTSIYDGIQRPLEVIREKTGDFIARGVTAPALPRDKKWHFIPKAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGE 158 (588)
T ss_dssp TCTTCEEETTCCSSSSCCCCCSSSCCCCCCCCSSCSSCCEEEEECCCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEE
T ss_pred HHHhhccCCCCCcccCcccccccccccccccCccccccccccccccccCcccccCceEEEEecccceeeeeecCCCCCce
Confidence 9999999999999999754211 0
Q ss_pred --------------------------------ceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCC
Q 011350 123 --------------------------------AYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAG 170 (488)
Q Consensus 123 --------------------------------~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G 170 (488)
++||++ .|+++++|.++++||+||||+||+|+|||||||++|||++|
T Consensus 159 v~~i~~~g~~~v~~~i~~i~~~~g~~~~i~~~~~wpv~-~~~p~~~R~~~~epl~TGirvID~l~PigkGqr~~I~g~~g 237 (588)
T 3mfy_A 159 IVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVR-VKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPAG 237 (588)
T ss_dssp EEEECCSEEECTTSEEEEEECTTCCEEEEESCEEEETT-SCCCCSEEECSCSEECCSCHHHHHHSCEETTCEEEECSCCS
T ss_pred EEEeccCCcccccceEEEEecCCCcccccccccccccc-CCCchhhhccCCcccccCcchhhccCCcccCCeEEeecCCC
Confidence 012222 23345689999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhcc-------CCCcceEEEEEeCCC
Q 011350 171 LPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEE-------NGSMERVTLFLNLAN 243 (488)
Q Consensus 171 ~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~-------~~~~~~tvvv~~t~~ 243 (488)
+|||+|+++|++++. +| +|||++||||.+++.++.++|.+ +++|+||++|++|+|
T Consensus 238 ~GKT~L~~~ia~~~~-------~~-----------~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rtvvV~~tsd 299 (588)
T 3mfy_A 238 SGKTVTQHQLAKWSD-------AQ-----------VVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSN 299 (588)
T ss_dssp HHHHHHHHHHHHHSS-------CS-----------EEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGEEEEECCTT
T ss_pred CCHHHHHHHHHhccC-------CC-----------EEEEEEecccHHHHHHHHHHHHHhcccccccccccceEEEEECCC
Confidence 999999999999864 45 99999999997777777777754 567999999999999
Q ss_pred CCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccC---
Q 011350 244 DPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIE--- 320 (488)
Q Consensus 244 ~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~--- 320 (488)
+||++|++++|+|+|+||||| |+|+|||+++||+||||+|+||||+++||||+++|||||+|++|++||||||+++
T Consensus 300 ~p~~~r~~~~~~a~tiAEyfr-d~G~dVLl~~DsltR~A~A~rEis~~lge~P~~~GYp~~l~s~L~~l~ERAg~~~~~~ 378 (588)
T 3mfy_A 300 MPVAAREASIYTGITIAEYFR-DMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLG 378 (588)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH-HTTCEEEEEEECTTTCCCCC----------------CCHHHHHHHHHHTTCEEEECSS
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HcCCCEEEeecchHHHHHHHHHHHHhccCCCccccCCchhhhhhhHHHhccccccccC
Confidence 999999999999999999999 8999999999999999999999999999999999999999999999999999874
Q ss_pred --CCCcceeEEeEEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCccccccccccc--ccccccHHHH
Q 011350 321 --GRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGE--GMTRRDHSDV 396 (488)
Q Consensus 321 --~~~GSIT~i~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~--~~~~~~h~~~ 396 (488)
+++||||+|++|++|+||++||||+++++|+||||+|||+||++||||||||+.|+||+|+.+..+ .+++++|+++
T Consensus 379 ~~~~~GSIT~i~~v~~~gdD~sdpi~~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~i~~~~~~~~~~~h~~~ 458 (588)
T 3mfy_A 379 SDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAM 458 (588)
T ss_dssp SSCCEEEEEEEEECCCTTSCSSCSHHHHHHHHCSEECCBCHHHHHTTCSSCBCTTTCEETTHHHHHHHHHHHTCTTHHHH
T ss_pred CCCCCcceEEEEEEECCCCCCCCcchHHHHHhccCeeecCHHHHhCCCCCCcCcccchhhhcccccchhhccCCHHHHHH
Confidence 358999999999999999999999999999999999999999999999999999999999975321 1357899999
Q ss_pred HHHHHHHHHccccHHHHHHHhCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHH
Q 011350 397 SNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLR 463 (488)
Q Consensus 397 ~~~l~~~y~~~~~l~~~~~~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~ 463 (488)
++++++.|+++++++++.+++|.|+||++|++.++++++|++.||+|++|++++..+++++.+.+|+
T Consensus 459 a~~~~~~La~~~el~~ii~i~G~d~Ls~~dk~~l~~ar~i~e~fL~Q~~f~~~d~~~~~~k~~~~l~ 525 (588)
T 3mfy_A 459 RDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMR 525 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHHHHHHHHHTTCCCTTSTTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999878999999999855445544444444
No 14
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=100.00 E-value=1.1e-102 Score=827.46 Aligned_cols=429 Identities=24% Similarity=0.345 Sum_probs=396.8
Q ss_pred eeeEEEEEECCEEEEecc--CCCCCCcEEEEEeCC--Cc----eeEEEEEE-EECCeEEEEEccCCCCCccCCCEEEEcC
Q 011350 20 EYRTVTGVAGPLVILDKV--KGPKYYEIVNIRLGD--GT----MRRGQVLE-VDGEKAVVQVFEGTSGIDNKFTTVQFTG 90 (488)
Q Consensus 20 ~~G~V~~I~G~li~v~g~--~~~~igE~~~i~~~~--g~----~~~geVv~-~~~~~~~l~~~~~t~Gl~~~G~~V~~tg 90 (488)
.+|+|++|.|++|+++|+ ..+.+||+|+|...+ +. ...+||++ ++++.+.+++|+++.||+. |++|.+||
T Consensus 2 ~~G~v~~v~G~vv~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~ev~~~~~~~~v~~~~~~~t~gl~~-G~~V~~tg 80 (473)
T 1sky_E 2 TRGRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIAMASTDGLIR-GMEVIDTG 80 (473)
T ss_dssp CEEEEEEEETTEEEEEESTTCCCCTTEEEEEEECCSSTTCCCEEEEEEEEEEEETTEEEEEESSCCTTCCT-TCEEEEEE
T ss_pred CceEEEEEECcEEEEEecCCcccccCCEEEEEecCCCCCccccceEEEEeEEecCCcEEEEEecCccCCCC-CCEEEEcC
Confidence 479999999999999998 357999999997523 33 57899998 9999999999999999995 99999999
Q ss_pred CeeeEecCccccceEecCCCcccCCCCCCCCC-ceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCC
Q 011350 91 EVLKTPVSLDMLGRIFNGSGKPIDNGPPILPE-AYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAA 169 (488)
Q Consensus 91 ~~~~VpvG~~lLGRVlD~lG~PlDg~~~~~~~-~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~ 169 (488)
++++||||++|||||+|++|+|||+.+++... .++|+++.||+|++|.++++||+||||+||.|+|+++|||++|||++
T Consensus 81 ~~~~vpvg~~llGrv~d~lG~piD~~g~i~~~~~~~pi~~~~p~~~~r~~~~e~l~TGir~ID~L~pi~kGq~~~i~G~s 160 (473)
T 1sky_E 81 APISVPVGQVTLGRVFNVLGEPIDLEGDIPADARRDPIHRPAPKFEELATEVEILETGIKVVDLLAPYIKGGKIGLFGGA 160 (473)
T ss_dssp EECEEECSGGGTTCEECTTSCBCSSSCCCCTTSCEEESCCCCCCGGGBCCSCCEECCSCHHHHHHSCEETTCEEEEECCS
T ss_pred CcceeeccccceeeEEeecCCccCcccccCCCceeecccccCcchhhhcccCccccccchHHHHHhhhccCCEEEEECCC
Confidence 99999999999999999999999999998877 78999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHH
Q 011350 170 GLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIER 249 (488)
Q Consensus 170 G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r 249 (488)
|+|||+|+++|+++....+ ..+|||++||||.+++.++.+++.+.++++||++|++++++||+.|
T Consensus 161 GvGKTtL~~~l~~~~~~~~---------------~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r 225 (473)
T 1sky_E 161 GVGKTVLIQELIHNIAQEH---------------GGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGAR 225 (473)
T ss_dssp SSCHHHHHHHHHHHHHHHT---------------CCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHH
T ss_pred CCCccHHHHHHHhhhhhcc---------------CcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHH
Confidence 9999999999988764211 1288999999998888888888888889999999999999999999
Q ss_pred HhHHHHHHHHHHHhhHh-cCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeE
Q 011350 250 IITPRIALTTAEYLAYE-CGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQ 328 (488)
Q Consensus 250 ~~a~~~a~tiAEyfr~d-~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~ 328 (488)
++++++++++||||| | +|+|||+++||+||||+|+||||+++||||+++||||++|+.|++||||||+ .++||||+
T Consensus 226 ~~~~~~~ltiAEyFr-d~~G~~VLl~~D~itR~a~A~reis~~~ge~P~~~GYp~~~~~~l~~l~ERa~~--~~~GSIT~ 302 (473)
T 1sky_E 226 MRVALTGLTMAEYFR-DEQGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQERITS--TAKGSITS 302 (473)
T ss_dssp HHHHHHHHHHHHHHH-HHSCCEEEEEEECTHHHHHHHHHHHHHHTCCCCGGGCCTTHHHHHHHHHTTSSC--BSSCEEEE
T ss_pred HHHHHHHHHHHHHHH-HhcCCcEEEEeccHHHHHHHHHHHHhhcCCCCccccCCchhhhHHHHHHHHhcC--CCCCceEE
Confidence 999999999999999 6 8999999999999999999999999999999999999999999999999997 45899999
Q ss_pred EeEEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHccc
Q 011350 329 IPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGK 408 (488)
Q Consensus 329 i~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~~ 408 (488)
|++|++|+||++|||||++++|+||||+|||+||++||||||||+.|+||+|+.. +++++|+++++++++.|++++
T Consensus 303 i~tv~~~~dD~~dpi~~~~~~i~dg~ivLsr~La~~g~yPAId~l~S~SR~~~~~----~~~~~~~~~a~~lr~~la~y~ 378 (473)
T 1sky_E 303 IQAIYVPADDYTDPAPATTFSHLDATTNLERKLAEMGIYPAVDPLVSTSRALAPE----IVGEEHYQVARKVQQTLERYK 378 (473)
T ss_dssp EEECCCSTTCSSSHHHHHHHTTCSEEEEBCTTHHHHTCSSCBCTTTCCBTTCCHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCCcchHHHHhhcCceEEecHHHHhCCCCCccccccccccccchh----cCCHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999999999999999999752 345899999999999999999
Q ss_pred cHHHHHHHhCCcCCCHHHHHHHHHHhHHHHHHhccCCC----------CCCCHHHHHHHHHHHHHhcchhhhcCCChh
Q 011350 409 DVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAY----------DSRNIFQSLDLAWTLLRIFPRELLHRIPGK 476 (488)
Q Consensus 409 ~l~~~~~~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (488)
+++++.++.|.++++++++++++++++|+ .||+|+++ +..+++++++.++++++ .++.++|++
T Consensus 379 e~~~li~i~g~~~ls~~d~~~l~~~~~i~-~fL~Q~~~~~~~~~~~~~~~~~~~~t~~~l~~i~~----~~~~~~~~~ 451 (473)
T 1sky_E 379 ELQDIIAILGMDELSDEDKLVVHRARRIQ-FFLSQNFHVAEQFTGQPGSYVPVKETVRGFKEILE----GKYDHLPED 451 (473)
T ss_dssp HHHHHHHHHCSTTCTTHHHHHHHHHHHHH-HHTCBCCTTTHHHHSCCCCCCCHHHHHHHHHHHHT----TTTTTSCGG
T ss_pred HHHHHHHhhCcccCCHHHHHHHHHHHHHH-HHHcCCchHhhhhhccCCccCCHHHHHHHHHHHhc----ccccCCCHH
Confidence 99999999999999999999999999997 79999976 56899999999999875 455555554
No 15
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=100.00 E-value=2.9e-73 Score=602.18 Aligned_cols=423 Identities=23% Similarity=0.327 Sum_probs=378.7
Q ss_pred ccccceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCc---eeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCC
Q 011350 15 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGT---MRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGE 91 (488)
Q Consensus 15 ~~~~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~---~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~ 91 (488)
.++.+.+|+|++|.|++++++|+ .+.+||+|+|...+|. .+.|||++|+++.+.+++|+++.||+. |+.|.+||+
T Consensus 4 ~~~~~~~g~v~~v~g~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~~~gl~~-g~~v~~~~~ 81 (438)
T 2dpy_A 4 LPAVRRYGRLTRATGLVLEATGL-QLPLGATCIIERQDGPETKEVESEVVGFNGQRLFLMPLEEVEGILP-GARVYARNG 81 (438)
T ss_dssp ---CCCCEEEEECSSSSEEEESC-CCCSSCEEEEEECSTTSCEEEEEEEEECCTTCEEEEESSCCTTCCT-TEEEEEC--
T ss_pred ccccceeeEEEEEECcEEEEEeC-CCCCCCEEEEecCCCCccccEEEEEEEEcCCEEEEEEccCCCCCCC-CCEEEECCC
Confidence 35677899999999999999998 7899999999764554 578999999999999999999999996 999999999
Q ss_pred -------eeeEecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEE
Q 011350 92 -------VLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIP 164 (488)
Q Consensus 92 -------~~~VpvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~g 164 (488)
++++|+|+++||||+|++|+|+|+.+++....++|+++.+|++++|..++.++.||+++||.++|+++||+++
T Consensus 82 ~~~~~~~~~~v~~g~~~lgrv~~~lg~p~d~~~~~~~~~~~~i~~~~~~~l~~~~v~~~~~tg~~vld~vl~i~~Gq~~~ 161 (438)
T 2dpy_A 82 HGDGLQSGKQLPLGPALLGRVLDGGGKPLDGLPAPDTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMG 161 (438)
T ss_dssp --------CEEECSGGGTTEEECTTCCBSSSSCCCCCSCEEESCCCCCCTTTSCCCCSBCCCSCHHHHHHSCCBTTCEEE
T ss_pred ccccccccEEEEcchhhhhhhhhccCCccCCCCCccccccccccCCCCCceEEeccceecCCCceEEeeeEEecCCCEEE
Confidence 9999999999999999999999999888878888999988899999999999999999999999999999999
Q ss_pred eccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCC
Q 011350 165 LFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLAND 244 (488)
Q Consensus 165 Ifg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~ 244 (488)
|+|++|+|||||+++|+++.. .| ..++.++|+|.++...+.+++.+.+.+++++.+++++++
T Consensus 162 IvG~sGsGKSTLl~~Iag~~~-------~~-----------~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~ 223 (438)
T 2dpy_A 162 LFAGSGVGKSVLLGMMARYTR-------AD-----------VIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADV 223 (438)
T ss_dssp EEECTTSSHHHHHHHHHHHSC-------CS-----------EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTS
T ss_pred EECCCCCCHHHHHHHHhcccC-------CC-----------eEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCC
Confidence 999999999999999999864 23 678999999965555555544433457899999999999
Q ss_pred CHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCc
Q 011350 245 PTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKG 324 (488)
Q Consensus 245 ~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~G 324 (488)
++..++.+++.++++||||+ +++++|+.++|+++||+.++|++++++++||...|||++.++.+.+++||+++.++++|
T Consensus 224 ~~~~~~~v~~~~~~~ae~~~-~~~~~v~~~ld~l~~lS~g~qrvslAl~~p~~t~glD~~~~~~l~~ll~r~~~~~~~~G 302 (438)
T 2dpy_A 224 SPLLRMQGAAYATRIAEDFR-DRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIHGGG 302 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-TTTCEEEEEEECHHHHHHHHHHHHHHTTCCCCSSSCCTTHHHHHHHHHTTCSCCSTTSC
T ss_pred CHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHhHHHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999 79999999999999999999999999999999999999999999999999986211359
Q ss_pred ceeEEeEEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHH
Q 011350 325 SITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANY 404 (488)
Q Consensus 325 SIT~i~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y 404 (488)
|||+|+||++.++|+++|++|++..+.||+|++|+.+++.++||||||+.|+||+++.+ .+++|++++.+++..|
T Consensus 303 siT~~~tVlv~tHdl~~~iad~v~~l~dG~Ivl~~~~~~~~~~Paidv~~s~sR~~~~~-----~~~~~~~~~~~l~~~l 377 (438)
T 2dpy_A 303 SITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTAL-----ITEQHYARVRLFKQLL 377 (438)
T ss_dssp EEEEEEEEECSSSCSCCHHHHHHHHHSSEEEEECHHHHHTTCSSCEEEEEEEETTHHHH-----SCHHHHHHHHHHHHHH
T ss_pred cccceeEEEEeCCCccchhhceEEEEeCcEEEEeCCHHHccCCCCcCCccccccccccc-----CCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998864 4589999999988888
Q ss_pred HccccHHHHHHHhCCcCCCHHH-HHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHHh
Q 011350 405 AIGKDVQAMKAVVGEEALSSED-LLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRI 464 (488)
Q Consensus 405 ~~~~~l~~~~~~~G~d~l~~~~-~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~~ 464 (488)
+++++++++.++.|.++.++.+ ++++.++++++ +||+|+++++.++++++..+|++++.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~~~~~-~fl~Q~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T 2dpy_A 378 SSFQRNRDLVSVGAYAKGSDPMLDKAITLWPQLE-AFLQQGIFERADWEDSLQALDLIFPT 437 (438)
T ss_dssp HHHHHGGGTSSSSCCCTTSCHHHHHHHTTHHHHH-HHHCCCTTCCCCHHHHHHHHHHHSCC
T ss_pred HhhHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHH-HHcCCCCCCCCCHHHHHHHHHHHHhc
Confidence 8888888877766666666666 88999999996 79999999999999999999999764
No 16
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=100.00 E-value=8.2e-75 Score=597.38 Aligned_cols=320 Identities=14% Similarity=0.129 Sum_probs=274.4
Q ss_pred CCCccCCCEEEEcCCeeeEecCccccceEecCCCcccCCCCCCCCCceeec-cCCCCCCCCCCCcc-cceecceeeeeee
Q 011350 77 SGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDI-SGSSINPSERTYPE-EMIQTGISTIDVM 154 (488)
Q Consensus 77 ~Gl~~~G~~V~~tg~~~~VpvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i-~~~~~~~~~R~~~~-~~l~TGI~aID~l 154 (488)
-||+. |+.|...-++.+-.---.-|+||.+..|++.+... ..... ...|++|++|.++. +|++||+|+||+|
T Consensus 96 ~~lr~-gd~v~g~~r~~~~~e~~~~l~~v~~vng~~p~~~~-----~r~~fe~l~Pi~P~~R~~le~e~~~tGiraID~l 169 (427)
T 3l0o_A 96 FNLNT-GDIISGVIRKPKEGEKYFAMIKIEAINYRPVEAVN-----DRVNFDNLTPDYPRERFILETDPKIYSTRLIDLF 169 (427)
T ss_dssp TTCCT-TCEEEEEEECCCSSSCSEEEEEEEEETTEEC---------CCCCGGGSCEECCCSBCCCCCSTTCHHHHHHHHH
T ss_pred cCCCC-CCEEEEEEeCCCCCcccccceEEEecCCCChHHhc-----cccccccCCCCCchhhccccccchhccchhhhhc
Confidence 46664 67676654433221111356788888887776421 11122 34577999999998 9999999999999
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcce
Q 011350 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMER 234 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~ 234 (488)
+|||||||++|||++|+|||+|+++|+++.... ++++.|||++||||.+++.++.+++. |
T Consensus 170 ~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~--------------~~dv~~V~~lIGER~~EV~d~~~~~~--G---- 229 (427)
T 3l0o_A 170 APIGKGQRGMIVAPPKAGKTTILKEIANGIAEN--------------HPDTIRIILLIDERPEEVTDIRESTN--A---- 229 (427)
T ss_dssp SCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHH--------------CTTSEEEEEECSCCHHHHSSSSSSCC--S----
T ss_pred ccccCCceEEEecCCCCChhHHHHHHHHHHhhc--------------CCCeEEEEEEeccCcchHHHHHHHhC--C----
Confidence 999999999999999999999999999987521 13457899999999888877777775 3
Q ss_pred EEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHH
Q 011350 235 VTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYE 314 (488)
Q Consensus 235 tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~E 314 (488)
+||++|+|+||.+|++++++|+|+||||| |+|+|||+++||+||||+|+||||+++||+|+ +||||++|+.+++|+|
T Consensus 230 -~VV~atadep~~~r~~~a~~altiAEyfr-d~G~dVLil~DslTR~A~A~rEvs~~~Ge~~s-~Gypp~~~~~~~~~~e 306 (427)
T 3l0o_A 230 -IVIAAPFDMPPDKQVKVAELTLEMAKRLV-EFNYDVVILLDSLTRLARVYNIVVPPSGKLLT-GGVDPAALYKPKRFFG 306 (427)
T ss_dssp -EEEECCTTSCHHHHHHHHHHHHHHHHHHH-HTTCEEEEEEECHHHHHHHHHHHSCCCSCCCS-SSCCSSCSHHHHHHHH
T ss_pred -eEEEECCCCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEecccchHHHHHHHHHHHhcCCCCC-CCcCchhhcchHHHHH
Confidence 79999999999999999999999999999 89999999999999999999999999999999 6999999999999999
Q ss_pred hhcccCCCCcceeEEeEEeec-CCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccH
Q 011350 315 RAGRIEGRKGSITQIPILTMP-NDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDH 393 (488)
Q Consensus 315 Rag~~~~~~GSIT~i~~v~~~-~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h 393 (488)
||++++ ++||||+|+||+++ |||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.+++ ++|
T Consensus 307 rA~~ie-~~GSIT~i~tvlvetgdd~~dpI~d~~~~i~dg~IvLsR~La~~giyPAIDvl~S~SR~~~~l~~-----~~h 380 (427)
T 3l0o_A 307 AARNTR-EGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELVLSRQLANKRIFPAINLLLSGTRREELLLD-----EET 380 (427)
T ss_dssp TCEEES-SSCEEEEEEEEECSSSCSHHHHHHHHTTTCCSEEEEBCHHHHTTTCSSCBCSTTCEETTGGGTSC-----HHH
T ss_pred hhcccC-CCcceeEEEEEEecCCCCcCCcchHHhcccCCceEEEeHHHHhCCCCCccCccccccccccccCC-----HHH
Confidence 999985 58999999999999 89999999999999999999999999999999999999999999998665 799
Q ss_pred HHHHHHHHHHHHccccHHHHHHHhCCcCCCHHHHHHHH
Q 011350 394 SDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLE 431 (488)
Q Consensus 394 ~~~~~~l~~~y~~~~~l~~~~~~~G~d~l~~~~~~~l~ 431 (488)
++++.++++.|+++++++++.++++..+.++.+...+.
T Consensus 381 ~~~a~~lr~~la~y~e~e~l~~ll~~~~~t~~n~~f~~ 418 (427)
T 3l0o_A 381 LKKVWLLRRMLSAMTEEEGLTLILNKLSETSSNEEFLK 418 (427)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCHHHHHH
Confidence 99999999999999999999999888777777744443
No 17
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=100.00 E-value=1.2e-70 Score=567.30 Aligned_cols=268 Identities=14% Similarity=0.200 Sum_probs=247.1
Q ss_pred CCCCCCCCCCcc----cceecceeeeeeeeecccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCe
Q 011350 130 SSINPSERTYPE----EMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNF 205 (488)
Q Consensus 130 ~~~~~~~R~~~~----~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~ 205 (488)
.|..|.+|..+. +|++||||+||+++|+++|||++|||++|+|||+|+++|+++... +++++
T Consensus 140 tp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~--------------~~~~v 205 (422)
T 3ice_A 140 TPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY--------------NHPDC 205 (422)
T ss_dssp CEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHH--------------HCTTS
T ss_pred cccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhh--------------cCCCe
Confidence 355677787777 899999999999999999999999999999999999999998642 12345
Q ss_pred EEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHH
Q 011350 206 AIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADAL 285 (488)
Q Consensus 206 ~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~ 285 (488)
.|||++||||.+++.++.+++ +++||++|+|+||.+|++++++|+|+||||| |+|+|||+++||+||||+|+
T Consensus 206 ~~I~~lIGER~~Ev~~~~~~~-------~~~vV~atadep~~~r~~~a~~alt~AEyfr-d~G~dVLil~DslTR~A~A~ 277 (422)
T 3ice_A 206 VLMVLLIDERPEEVTEMQRLV-------KGEVVASTFDEPASRHVQVAEMVIEKAKRLV-EHKKDVIILLDSITRLARAY 277 (422)
T ss_dssp EEEEEEESSCHHHHHHHHTTC-------SSEEEEECTTSCHHHHHHHHHHHHHHHHHHH-HTSCEEEEEEECHHHHHHHH
T ss_pred eEEEEEecCChHHHHHHHHHh-------CeEEEEeCCCCCHHHHHHHHHHHHHHHHHHH-hcCCCEEEEEeCchHHHHHH
Confidence 799999999988888887776 3689999999999999999999999999999 89999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEEeec-CCCCCCCcccccccccceEEEeecccccc
Q 011350 286 REVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMP-NDDITHPTPDLTGYITEGQIYIDRQLQNR 364 (488)
Q Consensus 286 rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~~~-~dD~~dpi~d~~~~i~Dg~ivLsr~La~~ 364 (488)
||||+++||+|+ +||||++|+.+++|+||||+++ ++||||+|+||++| |||++|||+|++++|+||||+|||+||++
T Consensus 278 revs~~~Ge~ps-~Gyp~~~~~~~~rl~erA~~~~-~~GSIT~i~tvlv~tgdd~~dpI~d~~~~i~dg~ivLsR~La~~ 355 (422)
T 3ice_A 278 NTVVPASGKVLT-GGVDANALHRPKRFFGAARNVE-EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEK 355 (422)
T ss_dssp HHHSCCSSCBCS-SSCBHHHHHHHHHHHTTCEEES-SSCEEEEEEEECCSSSCHHHHHHHHHHHHHCSEEEEBCHHHHHT
T ss_pred HHHHHhcCCCCC-CCcCHHHHhhhHHHHHhccccC-CCcceeEEEEEEecCCCcccchHHHHhcccCCceEEEcHHHHhc
Confidence 999999999998 9999999999999999999975 48999999999999 99999999999999999999999999999
Q ss_pred CCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHhCCcCCCHHH
Q 011350 365 QIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSED 426 (488)
Q Consensus 365 g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~~~l~~~~~~~G~d~l~~~~ 426 (488)
||||||||+.|+||+|+.+++ ++|++++.++++.|+++++++.+.+++|..+-+..+
T Consensus 356 giyPAIDvl~S~SR~~~~~~~-----~~~~~~a~~lr~~la~~~e~~~~~~ll~~~~~t~~n 412 (422)
T 3ice_A 356 RVFPAIDYNRSGTRKEELLTT-----QEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTN 412 (422)
T ss_dssp TCSSCBCTTTCEESSGGGSSC-----HHHHHHHHHHHHHHTTSCHHHHHHHHHHTTTTSCHH
T ss_pred CCCCccCccccccccchhhCC-----HHHHHHHHHHHHHHHhCchHHHHHHHHHHhhcCCCH
Confidence 999999999999999997665 799999999999999999999999998887666655
No 18
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=100.00 E-value=6.5e-68 Score=545.82 Aligned_cols=343 Identities=24% Similarity=0.385 Sum_probs=317.2
Q ss_pred eeeEecCccccceEecCCCcccCCCC-CCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCC
Q 011350 92 VLKTPVSLDMLGRIFNGSGKPIDNGP-PILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAG 170 (488)
Q Consensus 92 ~~~VpvG~~lLGRVlD~lG~PlDg~~-~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G 170 (488)
+++||||++|||||+|++|+|||+.+ ++....++|+++.||++++|..+++++.||+++||.++|+++||+++|+|++|
T Consensus 2 ~~~~~vg~~~lGrv~~~~g~p~d~~~~~~~~~~~~~i~~~~~~~i~~~~l~~~~~tg~~ald~ll~i~~Gq~~gIiG~nG 81 (347)
T 2obl_A 2 SHKIRVGDALLGRLIDGIGRPMESNIVAPYLPFERSLYAEPPDPLLRQVIDQPFILGVRAIDGLLTCGIGQRIGIFAGSG 81 (347)
T ss_dssp CCEEEECGGGTTCEECTTSCBCSCCSSCCCCCEEEESCCCCSCSTTCCCCCSEECCSCHHHHHHSCEETTCEEEEEECTT
T ss_pred CceeecCccccCCEECCCCCcCCCCCCCCCCCCcccccCCCCCCeeecccceecCCCCEEEEeeeeecCCCEEEEECCCC
Confidence 68999999999999999999999998 88888889999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHH
Q 011350 171 LPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERI 250 (488)
Q Consensus 171 ~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~ 250 (488)
+|||||+++|+++.. .| ..+++++|++.+++..+...+.+ +.+++++++++++++|+..|+
T Consensus 82 aGKTTLl~~I~g~~~-------~~-----------~g~i~~~G~~~~ev~~~i~~~~~-~~~~~~v~~~~~~~~~~~~r~ 142 (347)
T 2obl_A 82 VGKSTLLGMICNGAS-------AD-----------IIVLALIGERGREVNEFLALLPQ-STLSKCVLVVTTSDRPALERM 142 (347)
T ss_dssp SSHHHHHHHHHHHSC-------CS-----------EEEEEEESCCHHHHHHHHTTSCH-HHHTTEEEEEECTTSCHHHHH
T ss_pred CCHHHHHHHHhcCCC-------CC-----------EEEEEEecccHHHHHHHHHhhhh-hhhhceEEEEECCCCCHHHHH
Confidence 999999999998853 33 78899999995444443333443 358899999999999999999
Q ss_pred hHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEe
Q 011350 251 ITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIP 330 (488)
Q Consensus 251 ~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~ 330 (488)
.+++.++++||||+ ++|++|++++|++++|+.++||+++++++||.+.||||++++.+.+|+||+++ +++||||+++
T Consensus 143 ~~~~~~~~~ae~~~-~~~~~vl~~ld~~~~lS~g~r~v~lal~~p~~t~Gldp~~~~~l~~ller~~~--~~~GsiT~~~ 219 (347)
T 2obl_A 143 KAAFTATTIAEYFR-DQGKNVLLMMDSVTRYARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAGP--APKGSITAIY 219 (347)
T ss_dssp HHHHHHHHHHHHHH-TTTCEEEEEEETHHHHHHHHHHHHHHTTCCCCBTTBCHHHHHHHHHHHTTCEE--CSSSEEEEEE
T ss_pred HHHHHHHHHHHHHH-hccccHHHHHhhHHHHHHHHHHHHHHcCCCCcccCCCHHHHHHHHHHHHHHhC--CCCCCeeeEE
Confidence 99999999999999 89999999999999999999999999999999999999999999999999986 2469999999
Q ss_pred EEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHccccH
Q 011350 331 ILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDV 410 (488)
Q Consensus 331 ~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~~~l 410 (488)
||+++++|+++|++|+++.|.||||+||+.+++.++||||||+.|+||+++.++ +++|++++.+++..|++++++
T Consensus 220 tVl~~thdl~~~i~d~v~~i~dG~Ivl~~~l~~~~~~Paid~~~S~sr~~~~~~-----~~~~~~~~~~~~~~l~~~~~~ 294 (347)
T 2obl_A 220 TVLLESDNVNDPIGDEVRSILDGHIVLTRELAEENHFPAIDIGLSASRVMHNVV-----TSEHLRAAAECKKLIATYKNP 294 (347)
T ss_dssp EEECCSSCCCCHHHHHHHHHCSEEEEBCHHHHTTTCSSCBCGGGCEETTHHHHS-----CHHHHHHHHHHHHHHHHCCCT
T ss_pred EEEEeCCCCCChhhhheEEeeCcEEEEeCCHHHcCCCCCcCccccccccccccC-----CHHHHHHHHHHHHHHHccHHH
Confidence 999999999999999999999999999999999999999999999999999754 479999999999999999999
Q ss_pred HHHHHHhCCcCCCHHH-HHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHH
Q 011350 411 QAMKAVVGEEALSSED-LLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLL 462 (488)
Q Consensus 411 ~~~~~~~G~d~l~~~~-~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~ 462 (488)
+++.++.|.++.++.+ +++++++++++ .||+|+++++.++++++..+|+++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~fl~Q~~~~~~~~~~~~~~~~~~~ 346 (347)
T 2obl_A 295 ELLIRIGEYTMGQDPEADKAIKNRKLIQ-NFIQQSTKDISSYEKTIESLFKVV 346 (347)
T ss_dssp HHHHTTTCCCCCSCHHHHHHHHTHHHHH-HHHCCCTTCCCCHHHHHHHHHHHT
T ss_pred HHHHHhcCCcCCCCHHHHHHHHHHHHHH-HHhCCCCCCCCCHHHHHHHHHHHh
Confidence 9999987877777777 89999999996 799999999999999999999985
No 19
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.24 E-value=0.00054 Score=63.80 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=38.1
Q ss_pred cceecceeeeeeee--ecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 142 EMIQTGISTIDVMN--SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 142 ~~l~TGI~aID~l~--pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.+.||+..+|-++ -+-+|+.++|.|++|+|||||+.+|+...
T Consensus 5 ~~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 5 GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp CEECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999776 68899999999999999999999998753
No 20
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.99 E-value=0.0023 Score=60.11 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=38.6
Q ss_pred cceecceeeeeeee--ecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 142 EMIQTGISTIDVMN--SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 142 ~~l~TGI~aID~l~--pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.+.||+..+|-++ .+-+|+-++|.|++|+|||+|+.+++.+.
T Consensus 4 ~~i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 4 IQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp CEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46889999999888 58899999999999999999999998753
No 21
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.74 E-value=0.00053 Score=64.74 Aligned_cols=42 Identities=21% Similarity=0.352 Sum_probs=37.4
Q ss_pred cceecceeeeeeee--ecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 142 EMIQTGISTIDVMN--SIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 142 ~~l~TGI~aID~l~--pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+.||+..+|-++ -+-+|+.++|.|++|+|||||+.+|+..
T Consensus 10 ~~i~tg~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 10 RRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp CEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeecCCHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 45789999999887 6899999999999999999999998743
No 22
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.63 E-value=0.0079 Score=60.86 Aligned_cols=44 Identities=18% Similarity=0.199 Sum_probs=39.1
Q ss_pred ccceecceeeeeeee--ecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 141 EEMIQTGISTIDVMN--SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 141 ~~~l~TGI~aID~l~--pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
...+.||++.+|-++ -+-+|+-+.|+|++|+|||+|+.+++.++
T Consensus 101 ~~~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 101 VFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp CCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred cceeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456889999999887 57799999999999999999999988764
No 23
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.60 E-value=0.00072 Score=62.78 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=37.8
Q ss_pred cceecceeeeeeee--ecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 142 EMIQTGISTIDVMN--SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 142 ~~l~TGI~aID~l~--pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.+.||++.+|-++ .+.+|+-++|.|++|+|||||+.+++...
T Consensus 3 ~~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 3 SRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp CEECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35789999999887 48899999999999999999999987654
No 24
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.60 E-value=0.0026 Score=64.38 Aligned_cols=112 Identities=14% Similarity=0.252 Sum_probs=66.9
Q ss_pred cceecceeeeeeeee------cccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCc
Q 011350 142 EMIQTGISTIDVMNS------IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN 215 (488)
Q Consensus 142 ~~l~TGI~aID~l~p------ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer 215 (488)
+.+.||+..+|.++. +.+| ++.|+|++|+|||+|+.+++.+.... +.+..|+|+-.-+.
T Consensus 5 ~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~--------------g~g~~vlyId~E~s 69 (333)
T 3io5_A 5 DVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQ--------------YPDAVCLFYDSEFG 69 (333)
T ss_dssp -CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHH--------------CTTCEEEEEESSCC
T ss_pred CEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhc--------------CCCceEEEEeccch
Confidence 457899999999987 7789 99999999999999987776654210 01126777544333
Q ss_pred hHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHHHHHHHHHHHh--hHhcCCeEEEEEcchhhHH
Q 011350 216 METAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYL--AYECGKHVLVILTDMSSYA 282 (488)
Q Consensus 216 ~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~tiAEyf--r~d~G~~Vlli~Dsltr~a 282 (488)
.+. .. .+.+.-. .++ ++++.+.+ .++. ++.+++-. - ..+.--++|+||++-+.
T Consensus 70 ~~~-~r-a~~lGvd--~d~-llv~~~~~---~E~~-----~l~i~~~l~~i-~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 70 ITP-AY-LRSMGVD--PER-VIHTPVQS---LEQL-----RIDMVNQLDAI-ERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp CCH-HH-HHHTTCC--GGG-EEEEECSB---HHHH-----HHHHHHHHHTC-CTTCCEEEEEECSTTCB
T ss_pred hhH-HH-HHHhCCC--HHH-eEEEcCCC---HHHH-----HHHHHHHHHHh-hccCceEEEEecccccc
Confidence 221 11 2333211 333 34443321 2222 12233332 2 35778899999998775
No 25
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.54 E-value=0.0019 Score=66.23 Aligned_cols=44 Identities=25% Similarity=0.397 Sum_probs=39.0
Q ss_pred ccceecceeeeeeeee---cccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 141 EEMIQTGISTIDVMNS---IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 141 ~~~l~TGI~aID~l~p---ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.+.+.||+..+|-++. +.+|.-+.|+|++|+|||||+.+++.+.
T Consensus 39 ~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 39 VEVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999887 6789999999999999999999988765
No 26
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.46 E-value=0.003 Score=64.41 Aligned_cols=44 Identities=23% Similarity=0.370 Sum_probs=38.2
Q ss_pred ccceecceeeeeeeee---cccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 141 EEMIQTGISTIDVMNS---IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 141 ~~~l~TGI~aID~l~p---ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.+.+.||+..+|-++. +-+|.-+.|+|++|+|||+|+.+++.+.
T Consensus 39 ~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 39 ISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568999999998876 5689999999999999999998887664
No 27
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.45 E-value=0.0086 Score=59.93 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=39.1
Q ss_pred ccceecceeeeeeee--ecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 141 EEMIQTGISTIDVMN--SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 141 ~~~l~TGI~aID~l~--pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
...+.||+..+|-++ -+-+|.-+.|+|++|+|||+|+.+++.+.
T Consensus 86 ~~~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 86 VKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp CCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 456889999999887 57789999999999999999999988764
No 28
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.42 E-value=0.0009 Score=61.92 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=36.1
Q ss_pred eecceeeeeeeee--cccCcEEEeccCCCCChhHHHHHHHH
Q 011350 144 IQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 144 l~TGI~aID~l~p--ig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
+.||++.+|-++. +.+|+.+.|.|++|+|||+|+.+++.
T Consensus 2 i~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 2 LSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5799999998874 89999999999999999999999876
No 29
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.27 E-value=0.013 Score=58.32 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=38.9
Q ss_pred ccceecceeeeeeee--ecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 141 EEMIQTGISTIDVMN--SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 141 ~~~l~TGI~aID~l~--pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
...+.||+..+|-++ -+-+|+-+.|+|++|+|||+|+.+++.++
T Consensus 77 ~~~i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 77 VWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp CCEECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeecCCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456889999999887 57789999999999999999999988764
No 30
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.26 E-value=0.0069 Score=61.57 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=38.8
Q ss_pred ccceecceeeeeeee--ecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 141 EEMIQTGISTIDVMN--SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 141 ~~~l~TGI~aID~l~--pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.+.+.||+..+|-++ .+-+|+-+.|+|++|+|||||+.+++...
T Consensus 110 ~~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 110 IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp CCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456889999999885 57799999999999999999999998764
No 31
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.22 E-value=0.013 Score=60.95 Aligned_cols=44 Identities=14% Similarity=0.238 Sum_probs=38.8
Q ss_pred ccceecceeeeeeee--ecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 141 EEMIQTGISTIDVMN--SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 141 ~~~l~TGI~aID~l~--pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
...+.||+..+|-++ -+-+|+-+.|+|++|+|||||+.+++-+.
T Consensus 157 ~~~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 157 LICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp SCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCccccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHh
Confidence 467889999999987 68899999999999999999999887554
No 32
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.06 E-value=0.0065 Score=62.14 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=38.9
Q ss_pred ccceecceeeeeeeee---cccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 141 EEMIQTGISTIDVMNS---IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 141 ~~~l~TGI~aID~l~p---ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.+.+.||+..+|-++. +-+|.-+.|.|++|+|||+|+.+++.+.
T Consensus 41 ~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 41 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999876 6799999999999999999998887765
No 33
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.00 E-value=0.0065 Score=62.39 Aligned_cols=44 Identities=23% Similarity=0.362 Sum_probs=38.7
Q ss_pred ccceecceeeeeeeee---cccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 141 EEMIQTGISTIDVMNS---IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 141 ~~~l~TGI~aID~l~p---ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.+.+.||+..+|.++. +-+|.-+.|+|++|+|||+|+.+++.+.
T Consensus 52 ~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 52 VQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 4568999999999886 6689999999999999999998887765
No 34
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.79 E-value=0.0039 Score=58.56 Aligned_cols=42 Identities=21% Similarity=0.351 Sum_probs=37.5
Q ss_pred ceecceeeeeeeee--cccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 143 MIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 143 ~l~TGI~aID~l~p--ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
-+.||++.+|-++. +-+|+-+.|.|++|+|||+|+.+++.+.
T Consensus 11 ri~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~ 54 (251)
T 2zts_A 11 RVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKG 54 (251)
T ss_dssp EECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 37899999999886 8899999999999999999998877653
No 35
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.69 E-value=0.0036 Score=58.77 Aligned_cols=43 Identities=19% Similarity=0.259 Sum_probs=36.8
Q ss_pred cceecceeeeeeee--ecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 142 EMIQTGISTIDVMN--SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 142 ~~l~TGI~aID~l~--pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.+.||++.+|-++ -+-+|+-+.|.|++|+|||+|+.+++.+.
T Consensus 3 ~~i~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 3 RRVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp CEECCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccccCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999885 47789999999999999999988877654
No 36
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.47 E-value=0.045 Score=54.54 Aligned_cols=43 Identities=12% Similarity=0.237 Sum_probs=37.6
Q ss_pred cceecceeeeeeee-ecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 142 EMIQTGISTIDVMN-SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 142 ~~l~TGI~aID~l~-pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
..+.||++.+|-++ -+-+|+-+.|.|++|+|||+|+.+++.+.
T Consensus 49 ~~i~TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 49 TGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CSBCCSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccCChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45789999999776 37789999999999999999999998775
No 37
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.37 E-value=0.013 Score=70.93 Aligned_cols=116 Identities=15% Similarity=0.240 Sum_probs=73.5
Q ss_pred Ccccceecceeeeeeeee---cccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCc
Q 011350 139 YPEEMIQTGISTIDVMNS---IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN 215 (488)
Q Consensus 139 ~~~~~l~TGI~aID~l~p---ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer 215 (488)
...+.+.|||..+|-++. +-+|+-+.|+|++|+|||+|+.+++.++.. .+..++|.-.-+.
T Consensus 10 ~~~~~isTGi~~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~~----------------~G~~vlYI~te~~ 73 (1706)
T 3cmw_A 10 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----------------EGKTCAFIDAEHA 73 (1706)
T ss_dssp --CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH----------------TTCCEEEECTTSC
T ss_pred ccCcccccCcHHHHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhh----------------CCCceEEEEecCc
Confidence 445678999999998865 888999999999999999999998776421 0125777777665
Q ss_pred hHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHH
Q 011350 216 METAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADAL 285 (488)
Q Consensus 216 ~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~ 285 (488)
.+... ...+.- . +++-. +..+ + ..++ ...+.+.+. ..++.-+||+||++-+....
T Consensus 74 ~~~l~--~~~lg~-d-l~~i~-i~~p-~--t~e~------l~~ll~~L~-~~~~~~LVVIDSLt~L~~~~ 128 (1706)
T 3cmw_A 74 LDPIY--ARKLGV-D-IDNLL-CSQP-D--TGEQ------ALEICDALA-RSGAVDVIVVDSVAALTPKA 128 (1706)
T ss_dssp CCHHH--HHHTTC-C-GGGCE-EECC-S--SHHH------HHHHHHHHH-HHTCCSEEEESCSTTCCCHH
T ss_pred cHHHH--HHhhcc-C-cccee-eecc-C--cHHH------HHHHHHHHH-hccCCCEEEEcchhhhcccc
Confidence 32221 122221 1 23322 3322 1 1222 234556665 45667799999999887643
No 38
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.27 E-value=0.0088 Score=58.20 Aligned_cols=47 Identities=19% Similarity=0.180 Sum_probs=38.7
Q ss_pred CCcccceecceeeeeeeee-cccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 138 TYPEEMIQTGISTIDVMNS-IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 138 ~~~~~~l~TGI~aID~l~p-ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
....+.+.||+..+|-++. +-+|+.++|.|++|+|||||+.+++...
T Consensus 7 ~~~~~~i~tg~~~ld~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 7 INILEAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp CCHHHHHHSCCCCCCEEETTEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCHHHHhcCCCCChheeECCccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3456778899999987764 5589999999999999999998887643
No 39
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.09 E-value=0.01 Score=53.68 Aligned_cols=30 Identities=20% Similarity=0.209 Sum_probs=25.0
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.+.+|..++|.|++|+|||||+..|+..
T Consensus 3 m~~i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 3 MTDDLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp ---CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred ccCCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 456889999999999999999999999664
No 40
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.08 E-value=0.0075 Score=59.06 Aligned_cols=42 Identities=19% Similarity=0.143 Sum_probs=36.1
Q ss_pred ceec-ceeeeeee-eecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 143 MIQT-GISTIDVM-NSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 143 ~l~T-GI~aID~l-~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
-+.| |+.++|-+ ..+-+|+-++|.|++|+|||||+.+|+...
T Consensus 16 ~i~t~g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 16 GLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CBCCCSCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4668 99999754 578899999999999999999999987764
No 41
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.05 E-value=0.012 Score=53.70 Aligned_cols=28 Identities=4% Similarity=0.195 Sum_probs=24.5
Q ss_pred cccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 157 IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 157 ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.+|+.++|.|++|+|||||+.+|+...
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 5579999999999999999999998753
No 42
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.99 E-value=0.078 Score=52.69 Aligned_cols=101 Identities=8% Similarity=0.035 Sum_probs=57.1
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCch---HHHHHHHHhhccCCCcce
Q 011350 158 ARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNM---ETAQFFKRDFEENGSMER 234 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~---e~~~~~~~~l~~~~~~~~ 234 (488)
+.+..+.|.|++|+|||+|+..+++...... + ..+.+..++++-|.... .....+...+....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~-----~-----~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~---- 107 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARA-----S-----SLGVLVKPIYVNARHRETPYRVASAIAEAVGVRV---- 107 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHH-----H-----HHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCC----
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHH-----h-----ccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCC----
Confidence 5677899999999999999999887652100 0 00012255666665432 33333444442210
Q ss_pred EEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHH
Q 011350 235 VTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADA 284 (488)
Q Consensus 235 tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A 284 (488)
.....+...-. -.+.++++ ..|+.++|++|++-++...
T Consensus 108 -----~~~~~~~~~~~------~~l~~~l~-~~~~~~vlilDEi~~l~~~ 145 (387)
T 2v1u_A 108 -----PFTGLSVGEVY------ERLVKRLS-RLRGIYIIVLDEIDFLPKR 145 (387)
T ss_dssp -----CSSCCCHHHHH------HHHHHHHT-TSCSEEEEEEETTTHHHHS
T ss_pred -----CCCCCCHHHHH------HHHHHHHh-ccCCeEEEEEccHhhhccc
Confidence 01111222111 12344555 6788999999999887654
No 43
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.89 E-value=0.015 Score=53.48 Aligned_cols=42 Identities=14% Similarity=0.191 Sum_probs=25.1
Q ss_pred eecceeeeeeeeecccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 144 IQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 144 l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+.|+--..+.+++..+|..++|.|++|+|||||+..|+...+
T Consensus 13 ~~~~~~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 13 LGTENLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp ---------------CCCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred cCchhhHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 344455566777778899999999999999999999987655
No 44
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.87 E-value=0.014 Score=54.14 Aligned_cols=29 Identities=10% Similarity=0.171 Sum_probs=24.0
Q ss_pred ecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 156 SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 156 pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
++-+|+.++|+|++|+|||||+.+|+...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 68899999999999999999999997653
No 45
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.81 E-value=0.013 Score=55.14 Aligned_cols=29 Identities=7% Similarity=0.200 Sum_probs=23.5
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+-+|+.++|.|++|+|||||+.+|+..
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred eecCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 56789999999999999999999999764
No 46
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.69 E-value=0.023 Score=58.67 Aligned_cols=37 Identities=11% Similarity=0.173 Sum_probs=31.0
Q ss_pred ceeeee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 147 GISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 147 GI~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+..++| .=+.+.+|+.++|+|++|+|||||+.+|+.-
T Consensus 15 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcC
Confidence 345664 4478999999999999999999999999653
No 47
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.63 E-value=0.018 Score=55.16 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=29.6
Q ss_pred eeeee-eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011350 148 ISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 148 I~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
..+++ .=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 34664 447899999999999999999999999854
No 48
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.62 E-value=0.085 Score=52.29 Aligned_cols=100 Identities=9% Similarity=0.146 Sum_probs=54.1
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEE
Q 011350 158 ARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTL 237 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvv 237 (488)
..++.+.|.|++|+|||+|+..+++..... .+....+++.-|.+.......+..-+..-+. .
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~-------------~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~-~---- 104 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK-------------FLGKFKHVYINTRQIDTPYRVLADLLESLDV-K---- 104 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH-------------TCSSCEEEEEEHHHHCSHHHHHHHHTTTTSC-C----
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH-------------hcCCceEEEEECCCCCCHHHHHHHHHHHhCC-C----
Confidence 457789999999999999999988765210 0001256666665432222222222211110 0
Q ss_pred EEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHH
Q 011350 238 FLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYAD 283 (488)
Q Consensus 238 v~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~ 283 (488)
......+..... -.+.++++ ..++.++|++|++.....
T Consensus 105 -~~~~~~~~~~~~------~~l~~~l~-~~~~~~vlilDE~~~l~~ 142 (386)
T 2qby_A 105 -VPFTGLSIAELY------RRLVKAVR-DYGSQVVIVLDEIDAFVK 142 (386)
T ss_dssp -CCSSSCCHHHHH------HHHHHHHH-TCCSCEEEEEETHHHHHH
T ss_pred -CCCCCCCHHHHH------HHHHHHHh-ccCCeEEEEEcChhhhhc
Confidence 001111222111 12345556 678899999999877653
No 49
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.49 E-value=0.019 Score=54.53 Aligned_cols=34 Identities=12% Similarity=0.255 Sum_probs=28.6
Q ss_pred eeee-eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011350 149 STID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 149 ~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.+++ .=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 18 ~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTT
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3453 447899999999999999999999999854
No 50
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.44 E-value=0.021 Score=54.72 Aligned_cols=31 Identities=13% Similarity=0.284 Sum_probs=27.4
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 24 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 24 ITFSIPEGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3478999999999999999999999998653
No 51
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.41 E-value=0.036 Score=67.97 Aligned_cols=114 Identities=15% Similarity=0.218 Sum_probs=71.1
Q ss_pred CCcccceecceeeeeeeee---cccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecC
Q 011350 138 TYPEEMIQTGISTIDVMNS---IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGV 214 (488)
Q Consensus 138 ~~~~~~l~TGI~aID~l~p---ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGe 214 (488)
....+.+.||+..+|.++. +-+|.-+.|+|++|+|||+|+..++..+... +..++|.-.=+
T Consensus 1402 ~~~~~~isTG~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~----------------G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1402 SMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----------------GKTCAFIDAEH 1465 (2050)
T ss_dssp TTSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT----------------TCCEEEECTTS
T ss_pred ccccccccCCCHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc----------------CCcEEEEEccc
Confidence 3446779999999999998 7799999999999999999998887765310 11455554443
Q ss_pred c-hHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHH
Q 011350 215 N-METAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYAD 283 (488)
Q Consensus 215 r-~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~ 283 (488)
. .... .+.+. -. +++ +.+.+.+ | .+ .++.+.+.+. ++++-=+|++|++.-|+.
T Consensus 1466 ~~~~l~---a~~~G-~d-l~~--l~v~~~~-~-~E------~~l~~~~~lv-r~~~~~lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1466 ALDPIY---ARKLG-VD-IDN--LLCSQPD-T-GE------QALEICDALA-RSGAVDVIVVDSVAALTP 1519 (2050)
T ss_dssp CCCHHH---HHHTT-CC-TTT--CEEECCS-S-HH------HHHHHHHHHH-HHTCCSEEEESCGGGCCC
T ss_pred ccCHHH---HHHcC-CC-chh--ceeecCC-h-HH------HHHHHHHHHH-hcCCCCEEEEcChhHhcc
Confidence 2 1211 12222 11 222 2233333 2 23 3344555554 456666899999976654
No 52
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.34 E-value=0.022 Score=52.83 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=24.9
Q ss_pred cccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 157 IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 157 ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
..+|+.++|.|++|+|||||+..|+...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999987754
No 53
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.32 E-value=0.023 Score=51.81 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=24.5
Q ss_pred ecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 156 SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 156 pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.+.+|..++|.|++|+|||||+.+|+...
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 46689999999999999999999997753
No 54
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.31 E-value=0.023 Score=54.85 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=28.6
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++ .=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 24 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 443 3478999999999999999999999998553
No 55
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.30 E-value=0.032 Score=57.32 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=30.3
Q ss_pred eeeee-eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011350 148 ISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 148 I~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
+.++| .=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 41 ~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhc
Confidence 55774 448999999999999999999999999864
No 56
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.28 E-value=0.024 Score=55.22 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=28.8
Q ss_pred eeee-eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011350 149 STID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 149 ~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.+++ .=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 20 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 20 EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3554 447899999999999999999999999854
No 57
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.26 E-value=0.024 Score=55.44 Aligned_cols=35 Identities=14% Similarity=0.223 Sum_probs=29.7
Q ss_pred eeeeee-eeecccCcEEEeccCCCCChhHHHHHHHH
Q 011350 148 ISTIDV-MNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 148 I~aID~-l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
..+++. =+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTS
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 456644 47899999999999999999999999854
No 58
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.23 E-value=0.029 Score=54.75 Aligned_cols=35 Identities=9% Similarity=0.217 Sum_probs=29.6
Q ss_pred eeeee-eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011350 148 ISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 148 I~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
..+++ .=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34554 347899999999999999999999999865
No 59
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.23 E-value=0.029 Score=54.15 Aligned_cols=34 Identities=12% Similarity=0.264 Sum_probs=29.1
Q ss_pred eeee-eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011350 149 STID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 149 ~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.+++ .=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3553 347899999999999999999999999865
No 60
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.22 E-value=0.025 Score=55.00 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=28.7
Q ss_pred eeee-eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011350 149 STID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 149 ~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.+++ .=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 29 ~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3554 337899999999999999999999999854
No 61
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.22 E-value=0.024 Score=51.14 Aligned_cols=30 Identities=7% Similarity=0.038 Sum_probs=26.9
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.+.+|+.++|.|+.|+|||||+..|+...
T Consensus 28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 467899999999999999999999998754
No 62
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.17 E-value=0.026 Score=55.13 Aligned_cols=34 Identities=9% Similarity=0.180 Sum_probs=28.9
Q ss_pred eeee-eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011350 149 STID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 149 ~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.+++ .=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 38 ~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHc
Confidence 4554 447899999999999999999999999854
No 63
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.16 E-value=0.026 Score=55.57 Aligned_cols=34 Identities=12% Similarity=0.303 Sum_probs=29.0
Q ss_pred eeee-eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011350 149 STID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 149 ~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.+++ .=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTT
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 3564 347899999999999999999999999854
No 64
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.15 E-value=0.027 Score=53.66 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=27.3
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 27 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 27 INFKIERGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3478899999999999999999999998653
No 65
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.13 E-value=0.027 Score=54.11 Aligned_cols=31 Identities=13% Similarity=0.070 Sum_probs=27.2
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 21 ISFEAQPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3368899999999999999999999998643
No 66
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.12 E-value=0.025 Score=53.60 Aligned_cols=34 Identities=12% Similarity=0.378 Sum_probs=28.4
Q ss_pred eeee-eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011350 149 STID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 149 ~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.+++ .=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTT
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3453 336889999999999999999999999854
No 67
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.10 E-value=0.027 Score=54.00 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=28.2
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011350 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
+++ .=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 21 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 453 337889999999999999999999999854
No 68
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.09 E-value=0.027 Score=55.45 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=28.9
Q ss_pred eeee-eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011350 149 STID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 149 ~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.+++ .=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 35 ~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3553 447899999999999999999999999854
No 69
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.09 E-value=0.024 Score=54.92 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=28.8
Q ss_pred eeeee-eeecccCcEEEeccCCCCChhHHHHHHHH
Q 011350 149 STIDV-MNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 149 ~aID~-l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.+++. =+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45543 37899999999999999999999999854
No 70
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.08 E-value=0.029 Score=57.48 Aligned_cols=37 Identities=14% Similarity=0.235 Sum_probs=31.1
Q ss_pred ceeee-eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 147 GISTI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 147 GI~aI-D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+..++ |.=+.+.+|+.++|+|++|+|||||+.+|+..
T Consensus 16 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcC
Confidence 34566 44478999999999999999999999999753
No 71
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.07 E-value=0.031 Score=50.26 Aligned_cols=29 Identities=10% Similarity=0.295 Sum_probs=25.5
Q ss_pred ecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 156 SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 156 pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.+.+|+.++|+|++|+|||+|+..+++..
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999999988765
No 72
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.03 E-value=0.029 Score=54.35 Aligned_cols=30 Identities=13% Similarity=0.313 Sum_probs=26.8
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011350 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 19 vsl~i~~Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 347899999999999999999999999854
No 73
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.03 E-value=0.028 Score=55.03 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=28.6
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++ .=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 34 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 453 3478999999999999999999999998543
No 74
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.01 E-value=0.17 Score=51.01 Aligned_cols=98 Identities=12% Similarity=0.114 Sum_probs=53.8
Q ss_pred cCcEEEe--ccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCch---HHHHHHHHhhccCCCcc
Q 011350 159 RGQKIPL--FSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNM---ETAQFFKRDFEENGSME 233 (488)
Q Consensus 159 ~Gqr~gI--fg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~---e~~~~~~~~l~~~~~~~ 233 (488)
.++.+.| .|++|+|||+|+..+++...... + . .+.+..++++-|.+.. +....+.+.+....
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~-----~----~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--- 115 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAA-----A----K-EGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPI--- 115 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHH-----H----H-TTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCC---
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHH-----h----c-cCCceeEEEEECCCCCCHHHHHHHHHHHhCCCC---
Confidence 4566777 99999999999999887643100 0 0 0012356777765432 33333333332210
Q ss_pred eEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHH
Q 011350 234 RVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYA 282 (488)
Q Consensus 234 ~tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a 282 (488)
.....+... ..-.+.+++. ..++.++|++|++-.+.
T Consensus 116 ------~~~~~~~~~------~~~~l~~~l~-~~~~~~llvlDe~~~l~ 151 (412)
T 1w5s_A 116 ------QVRGAPALD------ILKALVDNLY-VENHYLLVILDEFQSML 151 (412)
T ss_dssp ------CCTTCCHHH------HHHHHHHHHH-HHTCEEEEEEESTHHHH
T ss_pred ------CCCCCCHHH------HHHHHHHHHH-hcCCeEEEEEeCHHHHh
Confidence 001112211 1223445565 56889999999987654
No 75
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.99 E-value=0.032 Score=50.56 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=23.4
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+|..++|.|++|+|||||+..|+...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 68899999999999999999998753
No 76
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.98 E-value=0.025 Score=52.34 Aligned_cols=26 Identities=8% Similarity=0.193 Sum_probs=22.0
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+|+.++|.|++|+|||||+..|.+..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 68899999999999999999997753
No 77
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.96 E-value=0.03 Score=54.46 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=26.8
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011350 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 39 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 39 INFFIPSGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 337889999999999999999999999854
No 78
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.95 E-value=0.03 Score=54.27 Aligned_cols=34 Identities=6% Similarity=0.178 Sum_probs=28.5
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++ .=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 20 vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 453 3378899999999999999999999998543
No 79
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.93 E-value=0.03 Score=54.56 Aligned_cols=33 Identities=12% Similarity=0.212 Sum_probs=28.3
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011350 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
+++ .=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 22 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 453 337899999999999999999999999854
No 80
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.92 E-value=0.023 Score=53.49 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=20.7
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHH-HH
Q 011350 155 NSIARGQKIPLFSAAGLPHNEIAAQIC-RQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~-~~ 183 (488)
+.+-+|+.++|.|++|+|||||+.+|+ ..
T Consensus 22 l~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 22 MLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 456789999999999999999999997 54
No 81
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.88 E-value=0.031 Score=53.28 Aligned_cols=31 Identities=13% Similarity=0.072 Sum_probs=25.6
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+.+.+|..+||.|++|+|||||+.+|+...+
T Consensus 20 l~i~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 20 FQSMRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp ---CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 6788999999999999999999999977544
No 82
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.87 E-value=0.37 Score=47.93 Aligned_cols=92 Identities=11% Similarity=0.024 Sum_probs=52.9
Q ss_pred cCc--EEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCch---HHHHHHHHhhccCCCcc
Q 011350 159 RGQ--KIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNM---ETAQFFKRDFEENGSME 233 (488)
Q Consensus 159 ~Gq--r~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~---e~~~~~~~~l~~~~~~~ 233 (488)
.+. .+.|.|++|+|||+|+..+++.... . ....++++-|.... +....+...+...
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~-------~--------~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~---- 101 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKD-------K--------TTARFVYINGFIYRNFTAIIGEIARSLNIP---- 101 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTT-------S--------CCCEEEEEETTTCCSHHHHHHHHHHHTTCC----
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhh-------h--------cCeeEEEEeCccCCCHHHHHHHHHHHhCcc----
Confidence 445 7999999999999999999877531 0 01256676665533 3333333333211
Q ss_pred eEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhH
Q 011350 234 RVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSY 281 (488)
Q Consensus 234 ~tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~ 281 (488)
......+...-. -.+.+++. ..++.+++++|++...
T Consensus 102 -----~~~~~~~~~~~~------~~l~~~l~-~~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 102 -----FPRRGLSRDEFL------ALLVEHLR-ERDLYMFLVLDDAFNL 137 (389)
T ss_dssp -----CCSSCCCHHHHH------HHHHHHHH-HTTCCEEEEEETGGGS
T ss_pred -----CCCCCCCHHHHH------HHHHHHHh-hcCCeEEEEEECcccc
Confidence 001111221111 12344555 5788899999998766
No 83
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.86 E-value=0.036 Score=56.69 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=29.1
Q ss_pred ee-eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 150 TI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aI-D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
++ |.=+.+.+|+.++|+|++|+|||||+.+|+.-
T Consensus 30 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp CEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45 44478999999999999999999999998653
No 84
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.83 E-value=0.037 Score=56.66 Aligned_cols=35 Identities=11% Similarity=0.216 Sum_probs=29.8
Q ss_pred eee-eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 149 STI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 149 ~aI-D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.++ |.=+.+.+|+.++|+|++|+|||||+.+|+.-
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCC
Confidence 455 44478999999999999999999999998753
No 85
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.82 E-value=0.038 Score=56.65 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=29.5
Q ss_pred eee-eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 149 STI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 149 ~aI-D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.++ |.=+.+.+|+.++|+|++|+|||||+.+|+.-
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC
Confidence 345 34478999999999999999999999999653
No 86
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.82 E-value=0.037 Score=56.87 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=29.7
Q ss_pred eee-eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 149 STI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 149 ~aI-D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.++ |.=+.+.+|+.++|+|++|+|||||+.+|+.-
T Consensus 25 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 455 34478999999999999999999999998653
No 87
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.79 E-value=0.036 Score=49.90 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=23.7
Q ss_pred eecccCcEEEeccCCCCChhHHHHHH
Q 011350 155 NSIARGQKIPLFSAAGLPHNEIAAQI 180 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i 180 (488)
+.+.+|+.++|.|++|+|||||+.++
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHH
Confidence 57889999999999999999999953
No 88
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.74 E-value=0.039 Score=56.74 Aligned_cols=35 Identities=11% Similarity=0.225 Sum_probs=29.7
Q ss_pred eee-eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 149 STI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 149 ~aI-D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.++ |.=+.+.+|+.++|+|++|+|||||+.+|+.-
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcC
Confidence 455 44478999999999999999999999999653
No 89
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.65 E-value=0.024 Score=56.82 Aligned_cols=33 Identities=3% Similarity=0.073 Sum_probs=28.7
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
|.-+.+-+|++++|.|++|+|||||+..|++..
T Consensus 118 ~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 118 LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 344788999999999999999999999987753
No 90
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.62 E-value=0.034 Score=51.17 Aligned_cols=28 Identities=11% Similarity=0.122 Sum_probs=23.8
Q ss_pred cccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 157 IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 157 ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.-+|..++|.|++|+|||||+..|+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999998754
No 91
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.61 E-value=0.024 Score=60.51 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=34.2
Q ss_pred cceecceeeeeee-e-ecccCcEEEeccCCCCChhHHHHHH
Q 011350 142 EMIQTGISTIDVM-N-SIARGQKIPLFSAAGLPHNEIAAQI 180 (488)
Q Consensus 142 ~~l~TGI~aID~l-~-pig~Gqr~gIfg~~G~GKt~Ll~~i 180 (488)
+.+.||+.++|-+ + .+-+|+.++|.|++|+|||||+.++
T Consensus 19 ~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 19 AKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp CEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred ccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 4577999999754 5 7899999999999999999999985
No 92
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.60 E-value=0.062 Score=65.89 Aligned_cols=118 Identities=15% Similarity=0.244 Sum_probs=75.0
Q ss_pred CCCcccceecceeeeeeeee---cccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEec
Q 011350 137 RTYPEEMIQTGISTIDVMNS---IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMG 213 (488)
Q Consensus 137 R~~~~~~l~TGI~aID~l~p---ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iG 213 (488)
+.+..+.+.|||..+|-++. +-+|.-+.|+|++|+|||+|+.+++.+... .+..|+|+-.-
T Consensus 8 ~~~~~~~i~TGi~~LD~lLg~GGip~G~vtlI~G~pGsGKT~lalq~a~~~~~----------------~Ge~vlYI~tE 71 (2050)
T 3cmu_A 8 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----------------EGKTCAFIDAE 71 (2050)
T ss_dssp ----CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT----------------TTCCEEEECTT
T ss_pred hccCCCeeccCcHHHHHHHhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHhhc----------------cCCceEEEEcc
Confidence 34455678999999998864 779999999999999999999888765421 01257787776
Q ss_pred CchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHH
Q 011350 214 VNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADAL 285 (488)
Q Consensus 214 er~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~ 285 (488)
+..+... ...+.- . +++-. +..+ + ..+ ..+.+.+++. +.+.--++|+||++-+....
T Consensus 72 es~~~~r--a~~lG~-d-l~~i~-v~~p-~--~~e------~ll~il~~L~-~~~~~~lVVIDSISaL~~~~ 128 (2050)
T 3cmu_A 72 HALDPIY--ARKLGV-D-IDNLL-CSQP-D--TGE------QALEICDALA-RSGAVDVIVVDSVAALTPKA 128 (2050)
T ss_dssp SCCCHHH--HHHTTC-C-TTTCE-EECC-S--SHH------HHHHHHHHHH-HHTCCSEEEESCGGGCCCHH
T ss_pred CcchhhH--Hhhhcc-C-cccce-ecCC-C--cHH------HHHHHHHHHH-hccCCcEEEEcChHHhhhhc
Confidence 6533221 223321 1 33432 3322 1 122 2345666676 56677799999999877653
No 93
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.55 E-value=0.058 Score=54.61 Aligned_cols=44 Identities=0% Similarity=-0.089 Sum_probs=36.5
Q ss_pred cccceecceeeeeeee-ecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 140 PEEMIQTGISTIDVMN-SIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 140 ~~~~l~TGI~aID~l~-pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+...+.||+..+|-++ -+-+|.-+.|.|++|+|||+|+.+++.+
T Consensus 102 i~~~i~TGi~~LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 102 LTGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SSTTCCSBCCEEEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred hhhccccCcHHHHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4455779999999887 3346788899999999999999998775
No 94
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.40 E-value=0.033 Score=56.73 Aligned_cols=32 Identities=9% Similarity=0.161 Sum_probs=28.0
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+.+|+.++|+|++|+|||||+.+|+.-
T Consensus 18 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEEECTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred eeEEEEcCCCEEEEECCCCccHHHHHHHHHcC
Confidence 34478999999999999999999999999653
No 95
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.28 E-value=0.048 Score=56.44 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=29.8
Q ss_pred eeeee-eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011350 148 ISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 148 I~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
..+++ .=+.+-+|+.++|.|++|+|||||+.+|+.
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhC
Confidence 44564 337899999999999999999999999975
No 96
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.25 E-value=0.052 Score=49.83 Aligned_cols=31 Identities=13% Similarity=0.067 Sum_probs=25.2
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+.+.+|..+.|.|++|+||||+...+++..+
T Consensus 20 ~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 20 FQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4567899999999999999999999988765
No 97
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.23 E-value=0.043 Score=50.81 Aligned_cols=25 Identities=8% Similarity=0.165 Sum_probs=22.5
Q ss_pred CcEEEeccCCCCChhHHHHHHHHHh
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
|++++|.|++|+|||||+.+|+...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 7899999999999999999987754
No 98
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.13 E-value=0.05 Score=53.13 Aligned_cols=32 Identities=13% Similarity=0.344 Sum_probs=26.9
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011350 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
+++ .=+.+- |+.++|.|++|+|||||+..|+.
T Consensus 20 il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 20 SLENINLEVN-GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTT
T ss_pred eEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhC
Confidence 453 336788 99999999999999999999854
No 99
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.12 E-value=0.046 Score=54.17 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=28.6
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++ .=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 53 vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 443 3378999999999999999999999998653
No 100
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.05 E-value=0.043 Score=51.59 Aligned_cols=27 Identities=19% Similarity=0.083 Sum_probs=24.6
Q ss_pred cccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 157 IARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 157 ig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+-+|+.++|.|++|+|||||+..|+..
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 478999999999999999999998765
No 101
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.94 E-value=0.034 Score=56.73 Aligned_cols=34 Identities=18% Similarity=0.327 Sum_probs=29.1
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++ .=+.+.+|+.++|+|++|+|||||+.+|+.-
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 553 4478999999999999999999999998753
No 102
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.91 E-value=0.033 Score=55.73 Aligned_cols=36 Identities=22% Similarity=0.318 Sum_probs=30.1
Q ss_pred eeeee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 148 ISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 148 I~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
..+++ .=+.+-+|++++|.|++|+|||||+..|++.
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcC
Confidence 34554 3478999999999999999999999998664
No 103
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.86 E-value=0.058 Score=47.77 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.7
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+|..++|.|++|+|||||+..++...+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999988654
No 104
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.79 E-value=0.029 Score=51.20 Aligned_cols=32 Identities=6% Similarity=0.069 Sum_probs=27.6
Q ss_pred eeeeeeeecccCcEEEeccCCCCChhHHHHHHH
Q 011350 149 STIDVMNSIARGQKIPLFSAAGLPHNEIAAQIC 181 (488)
Q Consensus 149 ~aID~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~ 181 (488)
.+++. +++.+|.+++|.|.+|+|||||+..++
T Consensus 16 ~~l~~-~~~~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 16 PDIRH-LPSDTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SSGGG-SSCSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCHhH-CCCCCCcEEEEECCCCCCHHHHHHHHh
Confidence 45555 889999999999999999999998764
No 105
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.66 E-value=0.046 Score=48.44 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=24.2
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+|+.++|.|++|+|||+|+..+++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999998764
No 106
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.64 E-value=0.071 Score=48.30 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=26.3
Q ss_pred ecccCcEEEeccCCCCChhHHHHHHHHH-hc
Q 011350 156 SIARGQKIPLFSAAGLPHNEIAAQICRQ-AG 185 (488)
Q Consensus 156 pig~Gqr~gIfg~~G~GKt~Ll~~i~~~-~~ 185 (488)
+..+|.+++|.|++|+||||+...+++. .+
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g 36 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAELDG 36 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4567889999999999999999999887 44
No 107
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.62 E-value=0.056 Score=49.13 Aligned_cols=25 Identities=8% Similarity=0.189 Sum_probs=21.6
Q ss_pred CcEEEeccCCCCChhHHHHHHHHHh
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
|.-++|.|++|+|||||+.+|+...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4568999999999999999998654
No 108
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.58 E-value=0.073 Score=47.36 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=24.7
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 158 ARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
-+|..++|.|++|+||||++..++...+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 3588999999999999999999987654
No 109
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.54 E-value=0.066 Score=50.67 Aligned_cols=28 Identities=11% Similarity=0.240 Sum_probs=23.5
Q ss_pred cccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 157 IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 157 ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+-+|..++|.|++|+|||||+..|+...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 5679999999999999999999987653
No 110
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.51 E-value=0.1 Score=63.25 Aligned_cols=45 Identities=18% Similarity=0.321 Sum_probs=39.8
Q ss_pred ccceecceeeeeeeee---cccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 141 EEMIQTGISTIDVMNS---IARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 141 ~~~l~TGI~aID~l~p---ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
.+.+.||+..+|-++. +-+|.-+.|.|++|+|||+|+.+++.+..
T Consensus 361 ~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~ 408 (1706)
T 3cmw_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 408 (1706)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4568899999999987 77999999999999999999988877653
No 111
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.43 E-value=0.043 Score=57.45 Aligned_cols=43 Identities=21% Similarity=0.313 Sum_probs=37.6
Q ss_pred cceecceeeeeeee-ecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 142 EMIQTGISTIDVMN-SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 142 ~~l~TGI~aID~l~-pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
..+.||+..+|-++ -+-+|+-+.|.|++|+|||+|+.+++.+.
T Consensus 184 ~~i~tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 184 TGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp CSBCCSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999998775 47799999999999999999999988775
No 112
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.43 E-value=0.078 Score=49.70 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=25.1
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+|.-+|..+.|.|++|+|||||+..|.+..
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 355689999999999999999999998764
No 113
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.43 E-value=0.056 Score=49.70 Aligned_cols=29 Identities=7% Similarity=0.042 Sum_probs=25.6
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
..+.+|..++|.|++|+|||||+..|++.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 35677899999999999999999999765
No 114
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.33 E-value=0.069 Score=53.37 Aligned_cols=29 Identities=7% Similarity=-0.084 Sum_probs=25.6
Q ss_pred ecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 156 SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 156 pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.+.+|..++|.|++|+|||||+..|+...
T Consensus 86 ~~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 86 DRPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 37889999999999999999999987653
No 115
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.28 E-value=0.052 Score=52.84 Aligned_cols=33 Identities=9% Similarity=-0.016 Sum_probs=27.5
Q ss_pred eeeeeecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 151 IDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 151 ID~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
++-+. +-+|+.++|.|++|+|||||+..|+...
T Consensus 17 l~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 17 VLELC-HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp HHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred HHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 33334 7899999999999999999999987754
No 116
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.23 E-value=0.075 Score=48.57 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=22.0
Q ss_pred cEEEeccCCCCChhHHHHHHHHHhc
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
.+++|.|++|+|||||+..|+...+
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999987754
No 117
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.18 E-value=0.094 Score=50.38 Aligned_cols=30 Identities=17% Similarity=0.131 Sum_probs=26.1
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+ +.++|.|++|+|||||+..|+.-
T Consensus 18 isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 18 VDFEMGR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEECC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 3467889 99999999999999999998653
No 118
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=91.94 E-value=0.025 Score=56.71 Aligned_cols=32 Identities=6% Similarity=0.104 Sum_probs=28.4
Q ss_pred eeeeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011350 151 IDVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 151 ID~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
+|.|+++-+|+.++|.|++|+|||||++.|+.
T Consensus 164 ~~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 164 LADIIPHFQDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp CTTTGGGGTTSEEEEEESHHHHHHHHHHHHCC
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHhcc
Confidence 56678888999999999999999999998843
No 119
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.89 E-value=0.048 Score=54.11 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=28.9
Q ss_pred eeeeeeecccCcEEEeccCCCCChhHHHHHHH
Q 011350 150 TIDVMNSIARGQKIPLFSAAGLPHNEIAAQIC 181 (488)
Q Consensus 150 aID~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~ 181 (488)
-||-|+.+-.|+..++.|++|+|||||++.|+
T Consensus 155 gi~~L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 155 GIDELVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp THHHHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred CHHHHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 36777788899999999999999999999997
No 120
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.87 E-value=0.091 Score=48.72 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=24.0
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 158 ARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
-+|.-++|.|++|+|||||+.+++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 468889999999999999999998764
No 121
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.80 E-value=0.082 Score=47.75 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=21.6
Q ss_pred CcEEEeccCCCCChhHHHHHHHHH
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.|++|+|||||+..|+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc
Confidence 677899999999999999999764
No 122
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.80 E-value=0.09 Score=48.36 Aligned_cols=28 Identities=11% Similarity=0.236 Sum_probs=25.3
Q ss_pred cccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 157 IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 157 ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.+|.-+.|.|++|+|||||+..+++..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 6789999999999999999999998764
No 123
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.80 E-value=0.11 Score=48.21 Aligned_cols=27 Identities=7% Similarity=0.111 Sum_probs=23.6
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
++.+++|.|++|+||||++..+++..+
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999988654
No 124
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.75 E-value=0.1 Score=49.45 Aligned_cols=27 Identities=11% Similarity=0.277 Sum_probs=24.4
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
++..++|.|++|+|||||+..|++..+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999987765
No 125
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.70 E-value=0.095 Score=46.92 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=24.2
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+|..+.+.|++|+||||+...+++..+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 678899999999999999999987654
No 126
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.69 E-value=1.3 Score=41.25 Aligned_cols=126 Identities=17% Similarity=0.254 Sum_probs=72.2
Q ss_pred EEEeccCCCCChhHHHHHHHHHhccccccccc---------------------------cccccc------CCCCCeEEE
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQAGLVKRLEKT---------------------------DNLLED------GEEDNFAIV 208 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~---------------------------d~~~~~------~~~~~~~~V 208 (488)
++.|+|+||+||+|....|++..+..++.+|- |.++++ ...+ .
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~~--~-- 77 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHG--N-- 77 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSS--C--
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccCC--c--
Confidence 47899999999999999988877755421100 000000 0111 2
Q ss_pred EEEecC--chHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHh-----------------------------------
Q 011350 209 FAAMGV--NMETAQFFKRDFEENGSMERVTLFLNLANDPTIERII----------------------------------- 251 (488)
Q Consensus 209 ~~~iGe--r~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~----------------------------------- 251 (488)
|.+=|= ..+.++.+...+...+..-..|+...-+++-..+|..
T Consensus 78 ~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~e~ 157 (206)
T 3sr0_A 78 VIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEV 157 (206)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSHHH
T ss_pred eEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCCHHH
Confidence 445554 2566677766666655434455555555444444432
Q ss_pred -----HHHHHH--HHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCC
Q 011350 252 -----TPRIAL--TTAEYLAYECGKHVLVILTDMSSYADALREVSAAREE 294 (488)
Q Consensus 252 -----a~~~a~--tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge 294 (488)
..|-.. -+-+||+ ++|+ +..+|..----+.+.+|-..+|+
T Consensus 158 i~~Rl~~Y~~~t~pl~~~Y~-~~~~--l~~Idg~~~~~eV~~~I~~~l~e 204 (206)
T 3sr0_A 158 IKKRLEVYREQTAPLIEYYK-KKGI--LRIIDASKPVEEVYRQVLEVIGD 204 (206)
T ss_dssp HHHHHHHHHHHTTHHHHHHH-TTTC--EEEEETTSCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCC--EEEEECCCCHHHHHHHHHHHHcc
Confidence 233322 3678888 6664 66778766666777777776665
No 127
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.64 E-value=0.088 Score=52.15 Aligned_cols=29 Identities=7% Similarity=-0.050 Sum_probs=25.1
Q ss_pred ecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 156 SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 156 pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+..+|..+||.|++|+|||||+..|+...
T Consensus 76 ~~~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 76 GQRIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34889999999999999999999987653
No 128
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=91.60 E-value=0.1 Score=47.77 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=24.4
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 158 ARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.+|..+.|.|++|+|||||+..++...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999998765
No 129
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.51 E-value=0.1 Score=56.02 Aligned_cols=33 Identities=6% Similarity=0.155 Sum_probs=28.2
Q ss_pred eeeeeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011350 150 TIDVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 150 aID~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
+++.+..+.+|++++|.|++|+|||||+..|+.
T Consensus 37 ~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 37 VLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred cccCcCcCCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 455444689999999999999999999999865
No 130
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.32 E-value=0.11 Score=51.59 Aligned_cols=29 Identities=7% Similarity=0.111 Sum_probs=26.2
Q ss_pred ecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 156 SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 156 pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.+.+|+.++|.|++|+|||||+..|+...
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999998764
No 131
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.26 E-value=0.064 Score=55.97 Aligned_cols=43 Identities=16% Similarity=0.279 Sum_probs=36.5
Q ss_pred cceecceeeeeeee-ecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 142 EMIQTGISTIDVMN-SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 142 ~~l~TGI~aID~l~-pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
..+.||+..+|-++ .+-+|+-+.|.|++|+|||+|+.+++.+.
T Consensus 181 ~~i~tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 181 AGVRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp --CCCSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CcccCCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45789999999776 36689999999999999999999988875
No 132
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.18 E-value=0.092 Score=52.94 Aligned_cols=30 Identities=7% Similarity=0.182 Sum_probs=26.8
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
-+.+.+|..++|.|++|+|||||+..|+..
T Consensus 49 ~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 49 LPQTGRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp GGGCCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcccCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999999999998764
No 133
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.18 E-value=0.084 Score=53.46 Aligned_cols=30 Identities=0% Similarity=0.100 Sum_probs=26.1
Q ss_pred eccc--CcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 156 SIAR--GQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 156 pig~--Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
++-+ |++++|.|++|+|||||+..|+....
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred HHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3566 99999999999999999999987643
No 134
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.17 E-value=0.25 Score=48.64 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=22.9
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.+.-+.|.|++|+|||+|+..+++..
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 45679999999999999999998865
No 135
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.13 E-value=0.13 Score=49.34 Aligned_cols=28 Identities=11% Similarity=0.148 Sum_probs=25.2
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 158 ARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
-+|..++|.|++|+|||||+..|++.-+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5788999999999999999999987655
No 136
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.13 E-value=0.12 Score=56.51 Aligned_cols=33 Identities=12% Similarity=0.218 Sum_probs=28.4
Q ss_pred eeeeeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011350 150 TIDVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 150 aID~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.++.+..+.+|+.++|.|++|+|||||+..|+.
T Consensus 93 ~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 93 KLHRLPTPRPGQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred eecCCCCCCCCCEEEEECCCCChHHHHHHHHhc
Confidence 455555788999999999999999999999865
No 137
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=90.93 E-value=0.83 Score=45.77 Aligned_cols=98 Identities=5% Similarity=-0.024 Sum_probs=60.4
Q ss_pred cccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecC---chHHHHHHHHhhccCCCcc
Q 011350 157 IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGV---NMETAQFFKRDFEENGSME 233 (488)
Q Consensus 157 ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGe---r~e~~~~~~~~l~~~~~~~ 233 (488)
-+++..+.|.|++|+|||+++..+++..... ++ +...+.+..|++-|=. .......+.+.+.+..
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~-----~~----~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~--- 109 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELITS-----SA----RKELPIFDYIHIDALELAGMDALYEKIWFAISKEN--- 109 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHHT-----TT----TTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC---
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHH-----hh----hccCCceEEEEEeccccCCHHHHHHHHHHHhcCCC---
Confidence 3678889999999999999999988876421 00 0111134555655533 2456666777775432
Q ss_pred eEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhH---hcCCeEEEEEcchhhHH
Q 011350 234 RVTLFLNLANDPTIERIITPRIALTTAEYLAY---ECGKHVLVILTDMSSYA 282 (488)
Q Consensus 234 ~tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~---d~G~~Vlli~Dsltr~a 282 (488)
. +...+ .-.+-++|.. .+++.+++++|.+-++.
T Consensus 110 ~------~~~~~----------~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 110 L------CGDIS----------LEALNFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp --------CCCC----------HHHHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred C------CchHH----------HHHHHHHHHHhhhccCCceEEEEecHHHhh
Confidence 0 11111 1234566652 35788999999998886
No 138
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.92 E-value=0.074 Score=55.78 Aligned_cols=44 Identities=11% Similarity=0.217 Sum_probs=38.1
Q ss_pred cceecceeeeeeeee-cccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 142 EMIQTGISTIDVMNS-IARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 142 ~~l~TGI~aID~l~p-ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
..+.||+..+|-++. +-+|+-+.|.|++|+|||+|+.+++.+..
T Consensus 178 ~gi~TG~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a 222 (444)
T 3bgw_A 178 TGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS 222 (444)
T ss_dssp CSBCCSCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CCcCCCcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHH
Confidence 457899999997764 67899999999999999999999988763
No 139
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.82 E-value=0.12 Score=50.53 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=23.7
Q ss_pred ecccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 156 SIARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 156 pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
.+.+| +++.|++|+|||+|+..|+...+
T Consensus 42 ~~~~G--vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 42 VTPAG--VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp CCCSE--EEEESSTTSCHHHHHHHHHHHTT
T ss_pred CCCCe--EEEECCCCCcHHHHHHHHHHHcC
Confidence 34566 99999999999999999987654
No 140
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.74 E-value=0.14 Score=51.02 Aligned_cols=27 Identities=15% Similarity=0.300 Sum_probs=24.4
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 158 ARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
++|+.++|.|++|+|||||+..|+...
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 479999999999999999999998764
No 141
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=90.73 E-value=0.13 Score=47.24 Aligned_cols=28 Identities=11% Similarity=0.058 Sum_probs=24.7
Q ss_pred ecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 156 SIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 156 pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+..+|..++|.|++|+|||||+..|+..
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999998764
No 142
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.71 E-value=0.082 Score=53.63 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=38.1
Q ss_pred cceecceeeeeeee-ecccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 142 EMIQTGISTIDVMN-SIARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 142 ~~l~TGI~aID~l~-pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
.-+.||+..+|-++ -+-+|+-+.|.|++|+|||+|+.+++.+..
T Consensus 27 ~gi~TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 27 TGIPTGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp CSBCCSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CcccCCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 45789999999776 478899999999999999999999988753
No 143
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=90.55 E-value=0.13 Score=48.74 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=23.4
Q ss_pred ecccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 156 SIARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 156 pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
.+.+| ++|.|++|+|||+|+..|+...+
T Consensus 47 ~~~~g--~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 47 RIPKG--VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHhC
Confidence 34556 99999999999999999987653
No 144
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.47 E-value=0.099 Score=55.17 Aligned_cols=30 Identities=13% Similarity=0.292 Sum_probs=26.2
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.+-+|++++|.|++|+|||||+..|+...
T Consensus 133 l~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 133 MSNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HHSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eEeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 456799999999999999999999987653
No 145
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.34 E-value=0.076 Score=52.52 Aligned_cols=33 Identities=12% Similarity=0.247 Sum_probs=28.7
Q ss_pred eeeeeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011350 150 TIDVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 150 aID~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
-||-++.+-+|+.++|.|++|+|||||+..|+.
T Consensus 159 gv~~lf~~l~geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 159 GIEELKEYLKGKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp THHHHHHHHSSSEEEEECSTTSSHHHHHHHHST
T ss_pred CHHHHHHHhcCCeEEEECCCCCcHHHHHHHhcc
Confidence 356677788999999999999999999999854
No 146
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.27 E-value=0.17 Score=46.22 Aligned_cols=29 Identities=7% Similarity=-0.028 Sum_probs=25.4
Q ss_pred cccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 157 IARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 157 ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+-+|..+.|.|++|+||||+...+++..+
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 44688899999999999999999988754
No 147
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.21 E-value=0.14 Score=55.95 Aligned_cols=33 Identities=6% Similarity=0.135 Sum_probs=28.1
Q ss_pred eeeeeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011350 150 TIDVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 150 aID~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
+++.+..+-+|+.++|.|++|+|||||+..|+.
T Consensus 107 ~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 107 VLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHTT
T ss_pred eeCCCCCCCCCCEEEEECCCCChHHHHHHHHhC
Confidence 455555689999999999999999999999864
No 148
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=90.18 E-value=0.32 Score=50.93 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=23.2
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+...+.|.|++|+|||+|+..|++..+
T Consensus 49 ~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 49 HLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 335689999999999999999988764
No 149
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.14 E-value=0.085 Score=53.97 Aligned_cols=31 Identities=6% Similarity=0.141 Sum_probs=25.8
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011350 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
+.|....+|+.++|.|++|+|||||++.|+.
T Consensus 207 ~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 207 KPLEEALTGRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp HHHHHHHTTSEEEEECCTTSSHHHHHHHHHC
T ss_pred HHHHHhcCCCEEEEECCCCccHHHHHHHHhc
Confidence 3444456899999999999999999999854
No 150
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.07 E-value=0.098 Score=55.77 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=35.6
Q ss_pred cceecceeeeeeee--ecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 142 EMIQTGISTIDVMN--SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 142 ~~l~TGI~aID~l~--pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+-+.||+.-+|-++ .+-+|..++|.|++|+|||||+.+++...
T Consensus 261 ~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 261 VRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp CEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44678887777553 78899999999999999999999987653
No 151
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.02 E-value=0.19 Score=44.98 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=23.3
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+|..++|.|++|+||||++..++...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 58889999999999999999998764
No 152
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.01 E-value=0.16 Score=54.10 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=26.8
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 288 l~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 288 VEGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 467899999999999999999999998754
No 153
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.90 E-value=0.15 Score=45.24 Aligned_cols=25 Identities=8% Similarity=0.209 Sum_probs=21.8
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHH
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+|.|++|.|.+|+|||+|+..++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999998654
No 154
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.89 E-value=0.18 Score=51.57 Aligned_cols=29 Identities=7% Similarity=0.111 Sum_probs=26.2
Q ss_pred ecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 156 SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 156 pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.+.+|+.++|.|++|+|||||+..|+...
T Consensus 153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp CSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 57789999999999999999999998764
No 155
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.84 E-value=0.17 Score=54.36 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=25.1
Q ss_pred ecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 156 SIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 156 pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.+-+|++++|.|++|+|||||+..|+..
T Consensus 308 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 308 EIKKGEVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999999999998653
No 156
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=89.76 E-value=0.16 Score=54.78 Aligned_cols=31 Identities=29% Similarity=0.377 Sum_probs=27.6
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+-+|++++|.|++|+|||||+..|++.
T Consensus 362 i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 362 VSFSIPQGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468899999999999999999999998764
No 157
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=89.75 E-value=0.19 Score=44.79 Aligned_cols=27 Identities=4% Similarity=0.071 Sum_probs=23.0
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+|..+.|.|++|+||||+...+++..+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 366899999999999999999988653
No 158
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=89.66 E-value=0.5 Score=49.22 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=22.4
Q ss_pred CcEEEeccCCCCChhHHHHHHHHHh
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.-+.|.|++|+|||+|+..|++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5679999999999999999998765
No 159
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=89.63 E-value=0.2 Score=43.85 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=21.4
Q ss_pred EEEeccCCCCChhHHHHHHHHHhc
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
.+.|.|++|+||||++..+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988765
No 160
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=89.60 E-value=0.19 Score=45.80 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=24.8
Q ss_pred ecccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 156 SIARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 156 pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
|+-+|-.+.|.|++|+||||+...+++..+
T Consensus 5 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 5 AARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp --CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345688899999999999999999988654
No 161
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=89.57 E-value=0.19 Score=44.84 Aligned_cols=28 Identities=14% Similarity=0.273 Sum_probs=24.6
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 158 ARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
-++..+.|.|++|+||||++..+++..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 3677899999999999999999988765
No 162
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=89.54 E-value=0.16 Score=55.06 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=29.5
Q ss_pred eeee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 149 STID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 149 ~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.+++ .=+.+-+|++++|.|++|+|||||+..|++.
T Consensus 358 ~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3553 4478999999999999999999999998664
No 163
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=89.52 E-value=0.16 Score=54.96 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=28.9
Q ss_pred ee-eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 150 TI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aI-D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
++ |.=+.+-+|++++|.|++|+|||||+..|++.
T Consensus 358 ~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp SEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 44 34478999999999999999999999998664
No 164
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.38 E-value=0.21 Score=45.95 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.6
Q ss_pred EEEeccCCCCChhHHHHHHHHHhc
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+++|.|++|+||||+...+++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999988765
No 165
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=89.27 E-value=0.23 Score=43.78 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=22.9
Q ss_pred cEEEeccCCCCChhHHHHHHHHHhc
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
|-++|.|++|+||||+...+++..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 7799999999999999999998765
No 166
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.22 E-value=0.17 Score=54.35 Aligned_cols=29 Identities=14% Similarity=0.310 Sum_probs=25.7
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 289 ~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 289 GEAKEGEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred ceECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999999998653
No 167
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=89.13 E-value=0.19 Score=48.41 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=23.0
Q ss_pred ecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 156 SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 156 pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.+.+| ++|.|++|+|||+|+..|+...
T Consensus 71 ~~~~g--vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 71 RIPKG--VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCe--EEEECCCcChHHHHHHHHHHHc
Confidence 34556 9999999999999999998764
No 168
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=89.11 E-value=0.59 Score=49.84 Aligned_cols=22 Identities=27% Similarity=0.144 Sum_probs=20.0
Q ss_pred cEEEeccCCCCChhHHHHHHHH
Q 011350 161 QKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
..++|.|..|+|||||+..+++
T Consensus 153 ~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5689999999999999999876
No 169
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.10 E-value=0.21 Score=54.58 Aligned_cols=28 Identities=14% Similarity=0.334 Sum_probs=25.2
Q ss_pred ecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 156 SIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 156 pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.+.+|+.++|.|++|+|||||+..|+..
T Consensus 378 ~v~~Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999999999998653
No 170
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=89.10 E-value=0.22 Score=57.20 Aligned_cols=34 Identities=9% Similarity=0.204 Sum_probs=29.3
Q ss_pred eeee-eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011350 149 STID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 149 ~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.+++ .=+.+.+|++++|.|++|+|||||+..|+.
T Consensus 449 ~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3554 447899999999999999999999999984
No 171
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.00 E-value=0.22 Score=45.85 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=21.6
Q ss_pred EEEeccCCCCChhHHHHHHHHHhc
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+++|.|++|+||||+...+++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987755
No 172
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.86 E-value=0.18 Score=54.65 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=28.7
Q ss_pred ee-eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 150 TI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aI-D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
++ |.=+.+-+|++++|.|++|+|||||+..|++.
T Consensus 370 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp SCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred cccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 44 33478999999999999999999999998654
No 173
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=88.77 E-value=0.23 Score=48.07 Aligned_cols=38 Identities=13% Similarity=0.271 Sum_probs=30.4
Q ss_pred eeeee-eeeeccc---CcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 148 ISTID-VMNSIAR---GQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 148 I~aID-~l~pig~---Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
..+++ .-+.+.+ |.++.|.|++|+||||++..+++..+
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34453 3356666 99999999999999999999998765
No 174
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=88.75 E-value=0.21 Score=45.46 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=19.9
Q ss_pred EEEeccCCCCChhHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~ 182 (488)
+++|.|++|+||||++..++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 175
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=88.71 E-value=1.1 Score=42.72 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=24.0
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 158 ARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
..+..+.|.|++|+|||+|+..+++..+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 3456699999999999999999988764
No 176
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=88.61 E-value=0.27 Score=45.15 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=25.2
Q ss_pred cccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 157 IARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 157 ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
-.+++.+.|.|++|+|||+|+..+++...
T Consensus 49 ~~~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 49 GDGVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp TCSCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34688999999999999999999988754
No 177
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=88.59 E-value=0.28 Score=44.44 Aligned_cols=27 Identities=15% Similarity=0.088 Sum_probs=23.9
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+|..+.|.|++|+||||++..+++..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999988754
No 178
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=88.50 E-value=0.27 Score=44.13 Aligned_cols=29 Identities=14% Similarity=0.245 Sum_probs=25.2
Q ss_pred cccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 157 IARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 157 ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+.++..+.|.|++|+||||+...+++..+
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34678899999999999999999988754
No 179
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=88.47 E-value=2.4 Score=42.20 Aligned_cols=30 Identities=13% Similarity=0.011 Sum_probs=25.8
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+...+|+.+++.|++|+||||++..|+...
T Consensus 100 ~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 100 FKENRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CCTTSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999998887654
No 180
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=88.44 E-value=0.29 Score=43.72 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=23.2
Q ss_pred CcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+..+.|.|++|+||||+...+++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56789999999999999999998765
No 181
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=88.41 E-value=0.26 Score=44.55 Aligned_cols=26 Identities=15% Similarity=0.078 Sum_probs=23.5
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+|..+.|.|++|+||||+...+++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67889999999999999999998864
No 182
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=88.36 E-value=0.29 Score=43.60 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=22.9
Q ss_pred CcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+-.+.|.|++|+||||+...+++..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 55799999999999999999988754
No 183
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.30 E-value=0.14 Score=52.09 Aligned_cols=30 Identities=7% Similarity=0.152 Sum_probs=26.5
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.+-+|+.++|.|++|+|||||+..|++..
T Consensus 170 ~~i~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 170 RAVQLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHHHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred HHHhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 467899999999999999999999987653
No 184
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.24 E-value=0.31 Score=42.60 Aligned_cols=27 Identities=11% Similarity=0.217 Sum_probs=23.4
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 158 ARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.+.-+.|.|++|+|||+|+..+++..
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 445679999999999999999998875
No 185
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.18 E-value=0.21 Score=52.25 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=25.0
Q ss_pred eecccCcE--EEeccCCCCChhHHHHHHHHH
Q 011350 155 NSIARGQK--IPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr--~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+-+|.. ++|+|++|+|||||+..|+..
T Consensus 35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred eEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 56889999 999999999999999998653
No 186
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=88.17 E-value=0.31 Score=43.13 Aligned_cols=26 Identities=12% Similarity=-0.015 Sum_probs=22.7
Q ss_pred CcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
|.-+.|.|.+|+||||+...+++..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56789999999999999999988754
No 187
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.09 E-value=0.26 Score=44.52 Aligned_cols=22 Identities=18% Similarity=0.456 Sum_probs=20.0
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|++|+|++|+|||||+..++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999998764
No 188
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=88.09 E-value=0.15 Score=55.09 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=29.0
Q ss_pred eeee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 149 STID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 149 ~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.+++ .=+.+-+|++++|.|++|+|||||+..|++.
T Consensus 355 ~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 355 PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred cceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 3453 3378999999999999999999999887654
No 189
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=88.06 E-value=0.28 Score=49.34 Aligned_cols=28 Identities=11% Similarity=0.056 Sum_probs=25.1
Q ss_pred cccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 157 IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 157 ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
-.+|..++|.|++|+||||++..|+...
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999998764
No 190
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.06 E-value=0.23 Score=44.90 Aligned_cols=22 Identities=18% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++|+|++|+|||||+..++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999998764
No 191
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=87.94 E-value=0.26 Score=43.78 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=19.3
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
++..+.|.|.+|+||||+...+++..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 677899999999999999999987654
No 192
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=87.88 E-value=0.28 Score=43.86 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=22.8
Q ss_pred CcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+.++.|.|++|+||||+..++++..+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35689999999999999999988755
No 193
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=87.87 E-value=0.29 Score=45.65 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=23.5
Q ss_pred cccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 157 IARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 157 ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
..++..+.|.|++|+||||+...+++..+
T Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 4 SARLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp ---CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34567899999999999999999988654
No 194
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=87.84 E-value=0.29 Score=44.04 Aligned_cols=29 Identities=10% Similarity=0.237 Sum_probs=25.1
Q ss_pred cccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 157 IARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 157 ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+.++..+.|.|++|+||||+...+++..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34577899999999999999999988755
No 195
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=87.80 E-value=0.7 Score=45.43 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=21.8
Q ss_pred cEEEeccCCCCChhHHHHHHHHHhc
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
..+.|.|++|+|||+|+..+++..+
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 3599999999999999999987754
No 196
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.73 E-value=0.15 Score=48.02 Aligned_cols=28 Identities=4% Similarity=-0.062 Sum_probs=24.4
Q ss_pred ecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 156 SIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 156 pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.-+|..++|.|+.|+|||||+..|+..
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999999988654
No 197
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=87.67 E-value=0.33 Score=43.41 Aligned_cols=28 Identities=4% Similarity=-0.014 Sum_probs=24.1
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 158 ARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
.++..+.|.|.+|+||||+...+++..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3567799999999999999999988654
No 198
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=87.62 E-value=0.33 Score=43.64 Aligned_cols=24 Identities=33% Similarity=0.646 Sum_probs=21.7
Q ss_pred EEEeccCCCCChhHHHHHHHHHhc
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
.+.|.|++|+||||++..+++..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 588999999999999999988765
No 199
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=87.48 E-value=0.31 Score=48.06 Aligned_cols=28 Identities=14% Similarity=-0.060 Sum_probs=24.0
Q ss_pred cccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 157 IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 157 ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
-.++..++|.|++|+|||||+..|++.-
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567889999999999999999987653
No 200
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=87.43 E-value=0.31 Score=49.70 Aligned_cols=28 Identities=11% Similarity=0.002 Sum_probs=25.3
Q ss_pred cccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 157 IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 157 ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+-+|+.++|.|++|+|||||+..|++..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 6789999999999999999999987754
No 201
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=87.35 E-value=0.37 Score=44.55 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=23.9
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+|-++.|.|++|+||||+...+++..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999988765
No 202
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=87.33 E-value=0.27 Score=47.93 Aligned_cols=23 Identities=13% Similarity=0.339 Sum_probs=20.1
Q ss_pred EEEeccCCCCChhHHHHHHHHHh
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+++|.|++|+|||||+..|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999987653
No 203
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.30 E-value=0.36 Score=45.34 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=24.7
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 158 ARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
.+|.+++|.|++|+||||+...++...+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4678999999999999999999988654
No 204
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.26 E-value=0.2 Score=54.18 Aligned_cols=34 Identities=15% Similarity=0.199 Sum_probs=28.7
Q ss_pred eeee-eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 150 TIDV-MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID~-l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++. =+.+-+|++++|.|++|+|||||+..|++.
T Consensus 358 ~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp SEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4543 378999999999999999999999988654
No 205
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=87.23 E-value=0.4 Score=42.74 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=27.4
Q ss_pred ceeee---eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 147 GISTI---DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 147 GI~aI---D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+.+ +.-+.+..| ..+|+|++|+|||+|+..|..-
T Consensus 11 nf~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 11 GFKSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SBGGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 44444 344567777 8899999999999999888553
No 206
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=87.17 E-value=0.3 Score=44.57 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=19.3
Q ss_pred EEEeccCCCCChhHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.++|.|++|+||||++.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999976
No 207
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=87.07 E-value=0.43 Score=50.88 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=21.1
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHH
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
..+.++|.|++|+|||+|+.++++.
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhc
Confidence 4556899999999999999988653
No 208
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.04 E-value=0.32 Score=42.54 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=19.6
Q ss_pred cEEEeccCCCCChhHHHHHHHH
Q 011350 161 QKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
-+++++|.+|+|||+|+..++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3789999999999999999864
No 209
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=87.02 E-value=0.26 Score=52.92 Aligned_cols=28 Identities=4% Similarity=0.128 Sum_probs=24.5
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHH
Q 011350 155 NSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
-..-+|+.++|+|++|+|||||+..|+.
T Consensus 20 ~~~~~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 20 PTPKNNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp CCCCTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3456899999999999999999999865
No 210
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=86.99 E-value=1.2 Score=43.38 Aligned_cols=59 Identities=8% Similarity=-0.020 Sum_probs=45.3
Q ss_pred eecceeeeeeeee--cccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHH
Q 011350 144 IQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMET 218 (488)
Q Consensus 144 l~TGI~aID~l~p--ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~ 218 (488)
+.|||..+|-++. +-+|.-++|.|++|+||++|..+++.+.. . .+..|+|...-|..+.
T Consensus 3 i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~--------~--------~Ge~~~~~~~~e~~~~ 63 (260)
T 3bs4_A 3 LSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKL--------K--------SDNLVGMFSISYPLQL 63 (260)
T ss_dssp BCCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHH--------H--------TTCEEEEEECSSCHHH
T ss_pred CccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHH--------H--------CCCcEEEEEEeCCHHH
Confidence 5799999998864 56899999999999999998777765542 1 1227899998887544
No 211
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=86.97 E-value=0.31 Score=50.40 Aligned_cols=28 Identities=7% Similarity=0.086 Sum_probs=25.2
Q ss_pred ecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 156 SIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 156 pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.+.+|.+++|.|.+|+|||||+++|+..
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4678999999999999999999999763
No 212
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=86.94 E-value=0.41 Score=43.51 Aligned_cols=28 Identities=14% Similarity=0.309 Sum_probs=23.9
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 158 ARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
.++..+.|.|++|+||||+...+++..+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456799999999999999999988754
No 213
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=86.88 E-value=0.36 Score=43.92 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=22.2
Q ss_pred cEEEeccCCCCChhHHHHHHHHHhc
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
-.+.|.|++|+||||++..+++..+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988765
No 214
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=86.75 E-value=0.42 Score=42.89 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=24.9
Q ss_pred cccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 157 IARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 157 ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
.-+|..+.|.|.+|+||||++..++....
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34688899999999999999999988753
No 215
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=86.60 E-value=0.42 Score=45.44 Aligned_cols=28 Identities=7% Similarity=0.084 Sum_probs=24.3
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 158 ARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
.++-++.|+|++|+||||+...+++..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3566899999999999999999988765
No 216
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=86.60 E-value=0.41 Score=44.36 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=24.2
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+|-++.|.|++|+||||+...|++..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 567899999999999999999988765
No 217
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=86.53 E-value=0.41 Score=43.42 Aligned_cols=27 Identities=7% Similarity=0.142 Sum_probs=23.0
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+...+.|.|++|+||||+...+++..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 345689999999999999999987754
No 218
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=86.48 E-value=0.16 Score=53.74 Aligned_cols=44 Identities=20% Similarity=0.164 Sum_probs=37.1
Q ss_pred cceec-ceeeeeeeee-cccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 142 EMIQT-GISTIDVMNS-IARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 142 ~~l~T-GI~aID~l~p-ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
..+.| |++.+|-++- +-+|.=+.|.|++|+|||+|+.+++.+..
T Consensus 222 ~~i~t~G~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a 267 (503)
T 1q57_A 222 VGLLFSGCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWG 267 (503)
T ss_dssp TCSCCSSCTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHT
T ss_pred CCccccchhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHH
Confidence 35678 9999997763 66899999999999999999999988753
No 219
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.44 E-value=0.35 Score=49.68 Aligned_cols=30 Identities=10% Similarity=0.055 Sum_probs=26.7
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.+.+|..++|.|++|+|||||+..++...
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 567899999999999999999999998653
No 220
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=86.33 E-value=0.28 Score=45.24 Aligned_cols=85 Identities=11% Similarity=0.059 Sum_probs=46.9
Q ss_pred EEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCc--hHHHHHHHHhhccCCCcceEEEEEe
Q 011350 163 IPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN--METAQFFKRDFEENGSMERVTLFLN 240 (488)
Q Consensus 163 ~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer--~e~~~~~~~~l~~~~~~~~tvvv~~ 240 (488)
+.|.|++|+|||++..+++.. +. -++|..-++. .|..+.+.+.....+ -.-.++
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~-------------------~~~yiaT~~~~d~e~~~rI~~h~~~R~-~~w~ti--- 57 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-AP-------------------QVLYIATSQILDDEMAARIQHHKDGRP-AHWRTA--- 57 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CS-------------------SEEEEECCCC------CHHHHHHHTSC-TTEEEE---
T ss_pred EEEECCCCCcHHHHHHHHHhc-CC-------------------CeEEEecCCCCCHHHHHHHHHHHhcCC-CCcEEE---
Confidence 679999999999999888654 31 3578887764 344444443333322 112221
Q ss_pred CCCCCHHHHHhHHHHHHHHHHHhhHh-cCCeEEEEEcchhhHHHHH
Q 011350 241 LANDPTIERIITPRIALTTAEYLAYE-CGKHVLVILTDMSSYADAL 285 (488)
Q Consensus 241 t~~~~~~~r~~a~~~a~tiAEyfr~d-~G~~Vlli~Dsltr~a~A~ 285 (488)
..|. .+++.++.. ...+ .+++|++|-|...+
T Consensus 58 --E~p~-----------~l~~~l~~~~~~~~-~VLvDclt~wl~n~ 89 (180)
T 1c9k_A 58 --ECWR-----------HLDTLITADLAPDD-AILLECITTMVTNL 89 (180)
T ss_dssp --CCSS-----------CGGGTSCTTSCTTC-EEEEECHHHHHHHH
T ss_pred --EcHh-----------hHHHHHHhhcccCC-eEEEcCHHHHHHHH
Confidence 2211 123333211 1124 79999999998765
No 221
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=86.32 E-value=0.38 Score=41.70 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.6
Q ss_pred EEEeccCCCCChhHHHHHHHHHhc
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
.+.|.|++|+||||+...+ +..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTT
T ss_pred EEEEECCCCCCHHHHHHHH-HHCC
Confidence 4789999999999999999 5544
No 222
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=86.26 E-value=1 Score=44.32 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=22.2
Q ss_pred cEEEeccCCCCChhHHHHHHHHHhc
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
..++|.|++|+|||+|+..+++..+
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHC
Confidence 4589999999999999999988765
No 223
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=86.15 E-value=0.16 Score=51.04 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=26.2
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.+-.|+.++|.|++|+|||||+..|+...
T Consensus 166 ~~i~~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 166 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999999986653
No 224
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=86.13 E-value=0.35 Score=42.32 Aligned_cols=27 Identities=11% Similarity=0.167 Sum_probs=23.1
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 158 ARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
..+..+.|.|++|+|||+|+..+++..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 446678999999999999999998865
No 225
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=86.02 E-value=0.41 Score=48.65 Aligned_cols=28 Identities=7% Similarity=-0.051 Sum_probs=24.0
Q ss_pred cccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 157 IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 157 ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
..+|+.++|.|++|+|||||+..|+...
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4677899999999999999998876654
No 226
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=85.91 E-value=0.31 Score=57.90 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=30.1
Q ss_pred eeee-eeeecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 149 STID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 149 ~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.+++ .=+.+-+||+++|.|++|+|||||+..|.+-.
T Consensus 1093 ~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred ccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 3553 33789999999999999999999999987754
No 227
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=85.89 E-value=0.34 Score=43.22 Aligned_cols=21 Identities=14% Similarity=0.316 Sum_probs=19.1
Q ss_pred EEEeccCCCCChhHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~ 182 (488)
|+.|.|.+|+|||+|+..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999998854
No 228
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=85.84 E-value=0.42 Score=42.44 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=21.8
Q ss_pred EEEeccCCCCChhHHHHHHHHHhc
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
++.|.|++|+||||+...+++..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999988765
No 229
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=85.78 E-value=2.2 Score=42.82 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.8
Q ss_pred EEEeccCCCCChhHHHHHHHHHhc
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
-++|.|++|+|||+|+..+++..+
T Consensus 86 ~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC
Confidence 489999999999999999998865
No 230
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=85.74 E-value=0.39 Score=41.25 Aligned_cols=22 Identities=9% Similarity=0.369 Sum_probs=19.8
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999998764
No 231
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=85.70 E-value=0.49 Score=41.37 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=21.6
Q ss_pred EEEeccCCCCChhHHHHHHHHHhc
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
++.|.|++|+||||+...+++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999988654
No 232
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=85.69 E-value=0.29 Score=56.26 Aligned_cols=31 Identities=10% Similarity=0.196 Sum_probs=27.3
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011350 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
|.=+.+-+|++++|.|++|+|||||+..|+.
T Consensus 691 dVSl~I~~GeivaIiGpNGSGKSTLLklLaG 721 (986)
T 2iw3_A 691 DINFQCSLSSRIAVIGPNGAGKSTLINVLTG 721 (986)
T ss_dssp EEEEEEETTCEEEECSCCCHHHHHHHHHHTT
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3447899999999999999999999999854
No 233
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=85.66 E-value=0.41 Score=40.84 Aligned_cols=22 Identities=14% Similarity=0.374 Sum_probs=19.8
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999888654
No 234
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=85.59 E-value=0.43 Score=42.77 Aligned_cols=23 Identities=9% Similarity=0.001 Sum_probs=20.5
Q ss_pred EEEeccCCCCChhHHHHHHHHHh
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.++|.|++|+||||++..+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998865
No 235
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=85.56 E-value=0.28 Score=51.04 Aligned_cols=21 Identities=5% Similarity=0.143 Sum_probs=20.1
Q ss_pred EEEeccCCCCChhHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.++|.|++|+|||||++.|+.
T Consensus 71 ~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 999999999999999999876
No 236
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=85.53 E-value=0.48 Score=45.42 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=22.3
Q ss_pred cEEEeccCCCCChhHHHHHHHHHhc
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
-.+.|.|++|+||||++..|++..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3799999999999999999988765
No 237
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=85.47 E-value=3 Score=43.74 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=23.0
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
++..+.+.|.+|+||||++..++.+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998765
No 238
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=85.46 E-value=0.43 Score=42.18 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=20.2
Q ss_pred cEEEeccCCCCChhHHHHHHHHH
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
-++.++|.+|+|||+|+..++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999998653
No 239
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=85.43 E-value=0.51 Score=43.43 Aligned_cols=28 Identities=21% Similarity=0.181 Sum_probs=24.8
Q ss_pred cccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 157 IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 157 ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.+|..+.|.|.+|+||||++..+++..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678899999999999999999998764
No 240
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=85.42 E-value=0.48 Score=40.43 Aligned_cols=22 Identities=5% Similarity=0.259 Sum_probs=19.7
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999988654
No 241
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=85.30 E-value=0.4 Score=40.79 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=19.8
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999998754
No 242
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=85.27 E-value=0.45 Score=41.87 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=19.4
Q ss_pred EEEeccCCCCChhHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.+.|.|++|+||||+...+++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 478999999999999999987
No 243
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=85.24 E-value=0.51 Score=40.48 Aligned_cols=22 Identities=9% Similarity=0.060 Sum_probs=19.8
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998664
No 244
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=85.22 E-value=0.47 Score=42.17 Aligned_cols=24 Identities=8% Similarity=0.030 Sum_probs=21.1
Q ss_pred EEEeccCCCCChhHHHHHHHHHhc
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
.+.|.|++|+||||++..+++..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999988654
No 245
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=85.11 E-value=0.54 Score=44.44 Aligned_cols=30 Identities=13% Similarity=0.088 Sum_probs=26.4
Q ss_pred ecccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 156 SIARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 156 pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
.+.+|..+.|.|++|+||||++..++..-.
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 466899999999999999999999988753
No 246
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=85.10 E-value=0.49 Score=41.54 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.0
Q ss_pred cEEEeccCCCCChhHHHHHHHHHhc
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
..+.|.|++|+||||+...+++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999988755
No 247
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.04 E-value=1.1 Score=46.38 Aligned_cols=23 Identities=13% Similarity=0.336 Sum_probs=21.8
Q ss_pred EEeccCCCCChhHHHHHHHHHhc
Q 011350 163 IPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 163 ~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
++++||||+|||.|+..+|+.++
T Consensus 185 vLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHT
T ss_pred eEEeCCCCCCHHHHHHHHHHhhC
Confidence 89999999999999999999876
No 248
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=85.03 E-value=0.54 Score=46.06 Aligned_cols=28 Identities=11% Similarity=0.261 Sum_probs=24.3
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 158 ARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
..+.-++|.|++|+|||+|+..+++..+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 4567799999999999999999988754
No 249
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=84.92 E-value=0.46 Score=40.58 Aligned_cols=22 Identities=14% Similarity=0.320 Sum_probs=19.8
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999988654
No 250
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=84.89 E-value=0.32 Score=53.43 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=26.7
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHH
Q 011350 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQIC 181 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~ 181 (488)
+++ .=+.+.+|+.++|.|++|+|||||+..|.
T Consensus 337 ~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 453 33789999999999999999999997653
No 251
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=84.87 E-value=0.52 Score=41.95 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=20.6
Q ss_pred EEEeccCCCCChhHHHHHHHHHh
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.++|.|++|+||||+...+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998864
No 252
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=84.86 E-value=0.49 Score=40.98 Aligned_cols=21 Identities=14% Similarity=0.377 Sum_probs=18.9
Q ss_pred EEEeccCCCCChhHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~ 182 (488)
|+.++|.+|+|||+|+..+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 789999999999999988754
No 253
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=84.74 E-value=0.47 Score=40.92 Aligned_cols=22 Identities=14% Similarity=0.395 Sum_probs=19.8
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999998754
No 254
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=84.69 E-value=0.6 Score=49.58 Aligned_cols=31 Identities=10% Similarity=-0.012 Sum_probs=26.3
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.=+.+-+ +.++|.|++|+|||||+..|+.-.
T Consensus 23 vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 23 RTFDFDE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp EEEECCS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEcc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 3367888 999999999999999999987643
No 255
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.53 E-value=0.49 Score=40.59 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.8
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999988654
No 256
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=84.42 E-value=0.59 Score=41.47 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=22.5
Q ss_pred CcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
...+.|.|++|+||||+...+++..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999988654
No 257
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=84.39 E-value=0.55 Score=42.29 Aligned_cols=24 Identities=17% Similarity=0.072 Sum_probs=21.6
Q ss_pred CcEEEeccCCCCChhHHHHHHHHH
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
-..++|.|++|+||||+...+++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 446899999999999999999886
No 258
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=84.36 E-value=0.54 Score=43.30 Aligned_cols=24 Identities=25% Similarity=0.212 Sum_probs=21.6
Q ss_pred EEEeccCCCCChhHHHHHHHHHhc
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
++.|.|++|+||||+...+++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 688999999999999999988655
No 259
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.32 E-value=1.3 Score=46.25 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=22.2
Q ss_pred EEEeccCCCCChhHHHHHHHHHhc
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
-++++||+|+|||.|+..+|+..+
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC
Confidence 389999999999999999999876
No 260
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=84.28 E-value=0.47 Score=45.26 Aligned_cols=30 Identities=17% Similarity=0.019 Sum_probs=26.0
Q ss_pred ecccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 156 SIARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 156 pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+..++..+.+.|++|+||||+...+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 556778899999999999999999988653
No 261
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=84.25 E-value=0.62 Score=42.17 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=21.8
Q ss_pred cEEEeccCCCCChhHHHHHHHHHh
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.-+.|.|++|+|||+|+..+++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 679999999999999999988765
No 262
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=84.24 E-value=0.54 Score=43.51 Aligned_cols=27 Identities=11% Similarity=-0.028 Sum_probs=23.8
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
++..+.|.|++|+||||+...+++..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999988765
No 263
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.23 E-value=1 Score=47.06 Aligned_cols=23 Identities=9% Similarity=0.286 Sum_probs=21.8
Q ss_pred EEeccCCCCChhHHHHHHHHHhc
Q 011350 163 IPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 163 ~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+++.||+|+|||.|+..+|+..+
T Consensus 209 iLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999876
No 264
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=84.20 E-value=0.58 Score=43.21 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=21.9
Q ss_pred cEEEeccCCCCChhHHHHHHHHHhc
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
-.++|.|++|+||||+..+++...+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3589999999999999999988744
No 265
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=84.10 E-value=0.48 Score=51.95 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=24.2
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHH
Q 011350 150 TID-VMNSIARGQKIPLFSAAGLPHNEIA 177 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll 177 (488)
++| .=+.+-+|+.++|.|++|+|||||+
T Consensus 33 ~L~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred ceeccEEEECCCCEEEEECCCCCCHHHHh
Confidence 443 3478999999999999999999996
No 266
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=84.09 E-value=3.7 Score=41.06 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=22.9
Q ss_pred CcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
..-++|.|++|+|||+|+..+++..+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC
Confidence 45699999999999999999988764
No 267
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=84.06 E-value=0.59 Score=40.03 Aligned_cols=22 Identities=14% Similarity=0.395 Sum_probs=19.8
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999998764
No 268
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=84.05 E-value=0.53 Score=40.93 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=19.7
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998654
No 269
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=84.01 E-value=0.68 Score=43.34 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=23.6
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
++.++.|.|++|+||||+...|++..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999988765
No 270
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=83.95 E-value=0.52 Score=46.92 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=22.6
Q ss_pred cEEEeccCCCCChhHHHHHHHHHhc
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
..+++.|++|+|||||+..|++..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 6699999999999999999988764
No 271
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=83.95 E-value=0.53 Score=41.83 Aligned_cols=23 Identities=4% Similarity=0.059 Sum_probs=20.5
Q ss_pred cEEEeccCCCCChhHHHHHHHHH
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
-++.++|.+|+|||+|+..+...
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998764
No 272
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=83.93 E-value=0.54 Score=40.32 Aligned_cols=22 Identities=9% Similarity=0.305 Sum_probs=19.7
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998754
No 273
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=83.89 E-value=0.55 Score=40.35 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=19.8
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999998654
No 274
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=83.88 E-value=0.63 Score=44.86 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=23.2
Q ss_pred CcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+..++|.|++|+|||+|+..+++..+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 56799999999999999999988764
No 275
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=83.81 E-value=0.61 Score=41.74 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=21.1
Q ss_pred cEEEeccCCCCChhHHHHHHHHHh
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
..+.|.|++|+|||+|+..+++..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 349999999999999999998764
No 276
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=83.75 E-value=0.56 Score=40.82 Aligned_cols=22 Identities=9% Similarity=0.321 Sum_probs=19.7
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+...
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999888654
No 277
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=83.65 E-value=0.52 Score=40.96 Aligned_cols=23 Identities=13% Similarity=0.348 Sum_probs=20.5
Q ss_pred cEEEeccCCCCChhHHHHHHHHH
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
-|+.++|.+|+|||+|+..+..+
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999998765
No 278
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=83.65 E-value=0.55 Score=41.26 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=19.9
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.|+|.+|+|||+|+..+..+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999998754
No 279
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=83.62 E-value=0.54 Score=45.99 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=20.8
Q ss_pred EEeccCCCCChhHHHHHHHHHhc
Q 011350 163 IPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 163 ~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+++.|++|+|||+|+..+++..+
T Consensus 39 lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67789999999999999999875
No 280
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=83.60 E-value=0.65 Score=42.72 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=21.1
Q ss_pred cCcEEEeccCCCCChhHHHHHHHH
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
++-.++|.|++|+||||++..++.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999977
No 281
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=83.60 E-value=0.57 Score=41.14 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=19.9
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998754
No 282
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=83.59 E-value=0.63 Score=46.92 Aligned_cols=24 Identities=8% Similarity=0.123 Sum_probs=22.0
Q ss_pred CcEEEeccCCCCChhHHHHHHHHH
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+++|.|.+|+|||||+..++..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 778999999999999999998764
No 283
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=83.54 E-value=0.6 Score=40.27 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=18.8
Q ss_pred EEEeccCCCCChhHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~ 182 (488)
|+.++|.+|+|||+|+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 789999999999999988853
No 284
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=83.52 E-value=0.59 Score=40.16 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=19.5
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999988653
No 285
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=83.49 E-value=0.61 Score=46.02 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=24.1
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 158 ARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.+|+.+++.|+.|+||||++..|+...
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999988654
No 286
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=83.43 E-value=0.62 Score=40.01 Aligned_cols=23 Identities=13% Similarity=0.449 Sum_probs=20.1
Q ss_pred cEEEeccCCCCChhHHHHHHHHH
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
-|+.++|.+|+|||+|+..+..+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 37999999999999999988653
No 287
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=83.32 E-value=0.31 Score=44.32 Aligned_cols=24 Identities=0% Similarity=0.052 Sum_probs=21.3
Q ss_pred cEEEeccCCCCChhHHHHHHHHHh
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.++|.|++|+|||||+..|++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999987764
No 288
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=83.30 E-value=0.59 Score=40.29 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=21.2
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHH
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.-|+.++|.+|+|||+|+..+..+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999998653
No 289
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=83.26 E-value=0.7 Score=41.73 Aligned_cols=24 Identities=8% Similarity=0.200 Sum_probs=21.8
Q ss_pred EEEeccCCCCChhHHHHHHHHHhc
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
.++|.|++|+||||+..+++...+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 689999999999999999988655
No 290
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=83.19 E-value=0.57 Score=47.06 Aligned_cols=23 Identities=4% Similarity=-0.005 Sum_probs=20.1
Q ss_pred EEEeccCCCCChhHHHHHHHHHh
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
-+||.|++|+|||||+..|....
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999986653
No 291
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=83.11 E-value=0.59 Score=51.00 Aligned_cols=29 Identities=7% Similarity=0.231 Sum_probs=24.1
Q ss_pred eecccC-----cEEEeccCCCCChhHHHHHHHHH
Q 011350 155 NSIARG-----QKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~G-----qr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+-+| +.++|.|++|+|||||+..|+..
T Consensus 368 l~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 368 LNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp EEECCEECCTTCEEEEESCTTSSHHHHHHHHHTS
T ss_pred EEEecCccccceEEEEECCCCCcHHHHHHHHhcC
Confidence 455555 88999999999999999998653
No 292
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=83.09 E-value=0.65 Score=43.92 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=21.0
Q ss_pred EEeccCCCCChhHHHHHHHHHhc
Q 011350 163 IPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 163 ~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
++|.|++|+|||+|+..+++..+
T Consensus 48 vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHcC
Confidence 89999999999999999988754
No 293
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=82.91 E-value=0.7 Score=43.87 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=21.5
Q ss_pred EEEeccCCCCChhHHHHHHHHHhc
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
.++|.|++|+||||+...+++..+
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 589999999999999999988654
No 294
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=82.89 E-value=0.57 Score=40.26 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=18.2
Q ss_pred EEEeccCCCCChhHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQIC 181 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~ 181 (488)
|+.++|.+|+|||+|+..+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 78999999999999998874
No 295
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=82.86 E-value=0.63 Score=53.45 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=19.6
Q ss_pred cEEEeccCCCCChhHHHHHHHHH
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
..++|.|..|+|||+|+.+++++
T Consensus 148 ~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 148 GWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp EEEEEECSTTSSHHHHHHHHTCC
T ss_pred CEEEEEeCCCCCHHHHHHHHhcC
Confidence 35899999999999999887654
No 296
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=82.85 E-value=0.63 Score=40.36 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=19.9
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998754
No 297
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=82.84 E-value=0.62 Score=41.66 Aligned_cols=22 Identities=5% Similarity=0.077 Sum_probs=19.7
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.|+|.+|+|||+|+..+..+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999887664
No 298
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=82.83 E-value=0.7 Score=40.73 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=20.5
Q ss_pred cEEEeccCCCCChhHHHHHHHHH
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=|+.++|.+|+|||+|+..+...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999998765
No 299
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=82.81 E-value=0.62 Score=40.54 Aligned_cols=22 Identities=9% Similarity=0.217 Sum_probs=19.5
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999988654
No 300
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=82.73 E-value=0.69 Score=48.08 Aligned_cols=28 Identities=7% Similarity=-0.109 Sum_probs=24.6
Q ss_pred cccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 157 IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 157 ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.-+|+.++|.|++|+|||||+..|+...
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 3678999999999999999999987754
No 301
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=82.71 E-value=2.8 Score=48.83 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=20.6
Q ss_pred CcEEEeccCCCCChhHHHHHHHHH
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
..-++|.|+.|+|||||+.++++.
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHHh
Confidence 356899999999999999988753
No 302
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=82.63 E-value=5.7 Score=39.04 Aligned_cols=27 Identities=15% Similarity=0.044 Sum_probs=23.3
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 158 ARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.+|..+.+.|.+|+||||++..++...
T Consensus 96 ~~~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 96 KIPYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SSSEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 358889999999999999998887654
No 303
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=82.58 E-value=0.35 Score=51.60 Aligned_cols=30 Identities=7% Similarity=-0.085 Sum_probs=25.3
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.+-+|+.++|.|++|+|||||+..++...
T Consensus 255 ~~v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 255 LAIEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345789999999999999999999986543
No 304
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=82.57 E-value=0.75 Score=44.03 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=23.0
Q ss_pred cEEEeccCCCCChhHHHHHHHHHhcc
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQAGL 186 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~~~ 186 (488)
-|+||+|++|+||||+...|++..+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~ 34 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGI 34 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCC
Confidence 37999999999999999999887663
No 305
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=82.45 E-value=0.65 Score=41.32 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=19.8
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.|+|.+|+|||+|+..+..+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999988764
No 306
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=82.44 E-value=0.66 Score=40.58 Aligned_cols=22 Identities=5% Similarity=0.031 Sum_probs=19.8
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999888654
No 307
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=82.44 E-value=0.61 Score=41.87 Aligned_cols=25 Identities=4% Similarity=0.089 Sum_probs=20.7
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHH
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.-|+.++|.+|+|||+|+..+..+
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4458999999999999999998754
No 308
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=82.41 E-value=0.66 Score=41.10 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=19.9
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7999999999999999998754
No 309
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.31 E-value=1.4 Score=46.16 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=21.9
Q ss_pred EEeccCCCCChhHHHHHHHHHhc
Q 011350 163 IPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 163 ~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
++++||+|+|||.|+..+|..++
T Consensus 219 vLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 219 VILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp EEEESSTTTTHHHHHHHHHHHHT
T ss_pred CceECCCCchHHHHHHHHHHHhC
Confidence 89999999999999999999876
No 310
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.31 E-value=0.94 Score=47.41 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=22.2
Q ss_pred EEEeccCCCCChhHHHHHHHHHhc
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
-++++||||+|||.|+..+|..++
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eeEEECcCCCCHHHHHHHHHHHhC
Confidence 389999999999999999999876
No 311
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=82.30 E-value=0.67 Score=40.47 Aligned_cols=22 Identities=14% Similarity=0.320 Sum_probs=19.8
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 6999999999999999998754
No 312
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=82.28 E-value=0.8 Score=45.54 Aligned_cols=28 Identities=7% Similarity=0.031 Sum_probs=24.8
Q ss_pred cccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 157 IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 157 ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
..+|..+.|.|++|+||||++..|+...
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 5678899999999999999999988764
No 313
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=82.24 E-value=0.63 Score=40.34 Aligned_cols=22 Identities=5% Similarity=0.208 Sum_probs=19.8
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999988754
No 314
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=82.21 E-value=0.67 Score=40.41 Aligned_cols=22 Identities=14% Similarity=0.360 Sum_probs=19.8
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999988654
No 315
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=82.21 E-value=0.81 Score=41.30 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=21.4
Q ss_pred EEEeccCCCCChhHHHHHHHHHhc
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
-+.|.|++|+|||+|+..+++...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 589999999999999999988754
No 316
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=82.16 E-value=0.58 Score=46.90 Aligned_cols=29 Identities=3% Similarity=-0.003 Sum_probs=25.5
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
....+|.+++|.|.+|+|||||+..++..
T Consensus 51 ~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 51 PYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp GGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999998754
No 317
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=82.15 E-value=0.73 Score=41.06 Aligned_cols=23 Identities=4% Similarity=0.156 Sum_probs=20.5
Q ss_pred EEEeccCCCCChhHHHHHHHHHh
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
|+.|+|.+|+|||+|+..+..+.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 78999999999999999987654
No 318
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=82.07 E-value=0.63 Score=40.51 Aligned_cols=25 Identities=8% Similarity=0.133 Sum_probs=21.4
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHH
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.-++.++|.+|+|||+|+..+..+
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999988653
No 319
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=82.04 E-value=0.54 Score=55.63 Aligned_cols=34 Identities=15% Similarity=0.336 Sum_probs=29.0
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++ .=+.+-+|++++|.|++|+|||||+..|.+.
T Consensus 1048 ~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp SBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTS
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 453 3378999999999999999999999999764
No 320
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=82.00 E-value=0.76 Score=43.09 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=22.4
Q ss_pred CcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
..-+.|.|++|+|||+|+..+++..+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34589999999999999999988764
No 321
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=81.96 E-value=0.7 Score=40.55 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=19.7
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998754
No 322
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=81.91 E-value=0.76 Score=42.37 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=18.3
Q ss_pred EEeccCCCCChhHHHHHHHHH
Q 011350 163 IPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 163 ~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+-|.||+|+|||||+..+...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 568899999999999998665
No 323
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=81.88 E-value=0.65 Score=41.13 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=19.9
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998764
No 324
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=81.86 E-value=0.72 Score=40.20 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=19.7
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 7899999999999999988654
No 325
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=81.71 E-value=0.57 Score=55.42 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=29.5
Q ss_pred eeee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 149 STID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 149 ~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.+++ .=+.+-+|++++|.|++|+|||||+..|.+.
T Consensus 404 ~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp CSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTS
T ss_pred cceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3553 3478999999999999999999999998664
No 326
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=81.70 E-value=3.4 Score=40.79 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.7
Q ss_pred cEEEeccCCCCChhHHHHHHHHHh
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.-++++|++|+|||+|+..+++..
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 458999999999999999998875
No 327
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=81.67 E-value=0.74 Score=43.06 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=19.7
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|++|+|.+|+|||+|+..|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 7899999999999999998653
No 328
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=81.62 E-value=0.74 Score=40.19 Aligned_cols=23 Identities=4% Similarity=-0.042 Sum_probs=20.2
Q ss_pred cEEEeccCCCCChhHHHHHHHHH
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=|+.++|.+|+|||+|+..+..+
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999888654
No 329
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=81.58 E-value=0.74 Score=39.95 Aligned_cols=21 Identities=10% Similarity=0.324 Sum_probs=18.8
Q ss_pred EEEeccCCCCChhHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~ 182 (488)
|+.++|.+|+|||+|+..+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999988743
No 330
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=81.57 E-value=0.68 Score=40.66 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=19.8
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999998654
No 331
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=81.52 E-value=0.88 Score=44.51 Aligned_cols=29 Identities=10% Similarity=0.154 Sum_probs=24.1
Q ss_pred ecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 156 SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 156 pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+-.+|.-+.|.|++|+||||+...+++..
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34456778999999999999999998764
No 332
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=81.50 E-value=0.74 Score=41.18 Aligned_cols=22 Identities=14% Similarity=0.320 Sum_probs=19.7
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
++.|+|.+|+|||+|+..+..+
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988654
No 333
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=81.50 E-value=0.63 Score=45.78 Aligned_cols=25 Identities=8% Similarity=0.096 Sum_probs=22.1
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHH
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
++.+++|+|.+|+|||||+..+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 5668999999999999999998754
No 334
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=81.44 E-value=0.75 Score=40.86 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=19.9
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.|+|.+|+|||+|+..+..+
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999998664
No 335
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=81.26 E-value=0.78 Score=40.98 Aligned_cols=22 Identities=5% Similarity=0.289 Sum_probs=19.9
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 7999999999999999888764
No 336
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=81.24 E-value=0.91 Score=42.28 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=21.3
Q ss_pred EEEeccCCCCChhHHHHHHHHHhc
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
++.|.|++|+||||+...+++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999988654
No 337
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=81.22 E-value=0.84 Score=43.67 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=21.1
Q ss_pred EEEeccCCCCChhHHHHHHHHHhc
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
-+.|.|++|+|||||...+++..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 368999999999999999988765
No 338
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=81.20 E-value=0.7 Score=40.66 Aligned_cols=22 Identities=5% Similarity=0.126 Sum_probs=19.3
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999888643
No 339
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=81.19 E-value=4.3 Score=41.75 Aligned_cols=27 Identities=11% Similarity=0.097 Sum_probs=22.4
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+..-+.+.|.+|+||||+...+++..+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 445688899999999999999887655
No 340
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=81.17 E-value=0.77 Score=40.67 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=19.9
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.|+|.+|+|||+|+..+..+
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999998764
No 341
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=81.17 E-value=4.7 Score=42.03 Aligned_cols=27 Identities=15% Similarity=0.021 Sum_probs=23.4
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 158 ARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.++..+.+.|++|+||||++..++...
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 357789999999999999999988764
No 342
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=81.04 E-value=0.59 Score=40.87 Aligned_cols=23 Identities=4% Similarity=0.098 Sum_probs=20.3
Q ss_pred cEEEeccCCCCChhHHHHHHHHH
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
-|+.++|.+|+|||+|+..+..+
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37899999999999999988764
No 343
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=80.96 E-value=0.95 Score=43.31 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=22.2
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 158 ARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.++..+.|.|.+|+||||+...+++.
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 35667899999999999999999876
No 344
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=80.95 E-value=0.87 Score=45.19 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=23.5
Q ss_pred CcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
|.-+.|.|++|+|||+|+..+++..+
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56799999999999999999998865
No 345
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=80.94 E-value=0.8 Score=41.04 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=19.8
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.|+|.+|+|||+|+..+..+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999998664
No 346
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=80.89 E-value=0.79 Score=41.72 Aligned_cols=24 Identities=4% Similarity=0.072 Sum_probs=21.0
Q ss_pred cEEEeccCCCCChhHHHHHHHHHh
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
-++.++|.+|+|||+|+..+..+.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999987653
No 347
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=80.86 E-value=0.82 Score=40.59 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=19.7
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999988654
No 348
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.80 E-value=2.1 Score=45.22 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=22.2
Q ss_pred EEEeccCCCCChhHHHHHHHHHhc
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
-+++.|++|+|||.|+..+|+..+
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHHHT
T ss_pred ceEeeCCCCCcHHHHHHHHHhccC
Confidence 489999999999999999999876
No 349
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=80.79 E-value=0.97 Score=44.68 Aligned_cols=26 Identities=12% Similarity=0.290 Sum_probs=23.1
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.++.+.|.|++|+|||.|+..|++..
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 36889999999999999999998765
No 350
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=80.66 E-value=0.95 Score=40.77 Aligned_cols=22 Identities=14% Similarity=0.296 Sum_probs=19.8
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.|.|.+|+|||+|+..+...
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999988754
No 351
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=80.54 E-value=0.83 Score=40.65 Aligned_cols=22 Identities=9% Similarity=0.049 Sum_probs=19.7
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998654
No 352
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=80.52 E-value=2.4 Score=41.01 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=22.1
Q ss_pred cEEEeccCCCCChhHHHHHHHHHhc
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
.-+.|.|++|+|||+|+..+++..+
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhC
Confidence 5699999999999999999988754
No 353
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=80.50 E-value=0.84 Score=40.70 Aligned_cols=22 Identities=9% Similarity=0.149 Sum_probs=20.0
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7999999999999999998764
No 354
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=80.48 E-value=0.79 Score=40.14 Aligned_cols=22 Identities=14% Similarity=0.273 Sum_probs=19.8
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999998754
No 355
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=80.47 E-value=0.76 Score=40.49 Aligned_cols=22 Identities=0% Similarity=0.226 Sum_probs=19.8
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999988654
No 356
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=80.46 E-value=0.76 Score=40.77 Aligned_cols=24 Identities=8% Similarity=0.133 Sum_probs=20.6
Q ss_pred CcEEEeccCCCCChhHHHHHHHHH
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
--++.++|.+|+|||+|+..+..+
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999988643
No 357
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=80.39 E-value=0.78 Score=40.99 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=19.8
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.|+|.+|+|||+|+..+..+
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999998654
No 358
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=80.24 E-value=0.88 Score=40.72 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=21.4
Q ss_pred cceeeeeeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 146 TGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 146 TGI~aID~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
||...+..+.+ -+--|+.++|.+|+|||+|+..+..+
T Consensus 15 ~~~~~~~~~~~-~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 15 TENLYFQSMAK-SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -------------CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ccccchhccCC-CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34343443332 23458999999999999999988664
No 359
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=80.05 E-value=0.89 Score=40.50 Aligned_cols=22 Identities=14% Similarity=0.221 Sum_probs=19.8
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7999999999999999988654
No 360
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=79.93 E-value=1 Score=48.26 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=24.9
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+|.-+++.|++|+|||+|+..|++..+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999999988764
No 361
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=79.85 E-value=0.85 Score=47.15 Aligned_cols=28 Identities=7% Similarity=0.116 Sum_probs=23.9
Q ss_pred ecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 156 SIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 156 pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
-+.+|.+++|.|.+|+|||||+..++..
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3567889999999999999999998654
No 362
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=79.67 E-value=0.99 Score=43.58 Aligned_cols=26 Identities=8% Similarity=0.121 Sum_probs=22.4
Q ss_pred CcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+..+.|.|++|+|||+|+..+++...
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 44699999999999999998887754
No 363
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=79.65 E-value=0.91 Score=40.81 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.7
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.|+|.+|+|||+|+..+..+
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 7899999999999999988654
No 364
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=79.61 E-value=0.92 Score=41.12 Aligned_cols=23 Identities=0% Similarity=0.011 Sum_probs=20.3
Q ss_pred cEEEeccCCCCChhHHHHHHHHH
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
-|+.++|.+|+|||+|+..+..+
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999998764
No 365
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=79.60 E-value=2.8 Score=40.81 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=19.1
Q ss_pred EEEeccC-CCCChhHHHHHHHHHhc
Q 011350 162 KIPLFSA-AGLPHNEIAAQICRQAG 185 (488)
Q Consensus 162 r~gIfg~-~G~GKt~Ll~~i~~~~~ 185 (488)
...+++| +|+|||+++..+++..+
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 4555655 99999999999988754
No 366
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=79.57 E-value=0.94 Score=39.98 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=19.9
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+...
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999998654
No 367
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=79.54 E-value=0.86 Score=41.02 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=20.9
Q ss_pred CcEEEeccCCCCChhHHHHHHHHH
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
-=|+.|+|.+|+|||+|+..+..+
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 348999999999999999998764
No 368
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=79.51 E-value=0.74 Score=45.39 Aligned_cols=21 Identities=10% Similarity=0.256 Sum_probs=18.2
Q ss_pred EEEeccCCCCChhHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~ 182 (488)
+++|.|++|+|||||+..|..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 349999999999999999753
No 369
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=79.29 E-value=0.78 Score=43.50 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=21.1
Q ss_pred EEeccCCCCChhHHHHHHHHHhc
Q 011350 163 IPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 163 ~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+.|.|++|+|||+|+..+++..+
T Consensus 47 vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 89999999999999999988765
No 370
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=79.16 E-value=1.1 Score=38.82 Aligned_cols=26 Identities=15% Similarity=0.084 Sum_probs=22.1
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.+.-+.|.|++|+|||+++..|++..
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 35569999999999999999987754
No 371
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=79.08 E-value=1 Score=39.92 Aligned_cols=24 Identities=13% Similarity=0.403 Sum_probs=20.8
Q ss_pred CcEEEeccCCCCChhHHHHHHHHH
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.-|+.++|.+|+|||+|+..+..+
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 347999999999999999998664
No 372
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=79.02 E-value=1.1 Score=42.89 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=22.9
Q ss_pred CcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+..+.+.|++|+|||+|+..+++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 55699999999999999999988764
No 373
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=79.02 E-value=1.1 Score=42.83 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=23.0
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
....+.|.|++|+|||+|+..+++..+
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 345689999999999999999988754
No 374
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=79.00 E-value=0.73 Score=49.68 Aligned_cols=29 Identities=10% Similarity=0.164 Sum_probs=25.8
Q ss_pred ecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 156 SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 156 pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.+-+|+.+.|.|.+|+|||||+..|+...
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhh
Confidence 35689999999999999999999998764
No 375
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=78.99 E-value=1.1 Score=39.40 Aligned_cols=21 Identities=14% Similarity=0.015 Sum_probs=18.2
Q ss_pred EEEeccCCCCChhHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~ 182 (488)
|+.++|.+|+|||+|+..+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999966644
No 376
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=78.92 E-value=0.71 Score=40.79 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=20.0
Q ss_pred cEEEeccCCCCChhHHHHHHHHH
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
-|+.++|.+|+|||+|+..+..+
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999988653
No 377
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=78.90 E-value=0.93 Score=40.22 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=19.7
Q ss_pred CcEEEeccCCCCChhHHHHHHHH
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.-|+.++|.+|+|||+|+..+..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999988743
No 378
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=78.89 E-value=0.92 Score=41.38 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.9
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.|+|.+|+|||+|+..+..+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 7899999999999999988664
No 379
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=78.86 E-value=0.93 Score=44.50 Aligned_cols=25 Identities=8% Similarity=0.058 Sum_probs=18.5
Q ss_pred CcEEEeccCCCCChhHHHHHHHHHh
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+-.++|.|++|+||||+...+++.-
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4468999999999999999998753
No 380
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=78.81 E-value=1.2 Score=40.41 Aligned_cols=23 Identities=4% Similarity=0.105 Sum_probs=19.9
Q ss_pred cEEEeccCCCCChhHHHHHHHHH
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
..++|.|++|+|||||+..+...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46789999999999999888765
No 381
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=78.79 E-value=1.1 Score=40.23 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=19.5
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.|+|.+|+|||+|+..+...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999888653
No 382
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=78.61 E-value=0.9 Score=53.93 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=28.1
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.=+.+-+|++++|.|++|+|||||++.|.+..
T Consensus 437 isl~i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 437 MNLRVNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp EEEEECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred eEEeecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 34789999999999999999999999987654
No 383
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=78.60 E-value=1.2 Score=42.06 Aligned_cols=28 Identities=7% Similarity=0.195 Sum_probs=23.3
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHhcc
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQAGL 186 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~ 186 (488)
+.--+.|+|++|+||+|....|++..+.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 3444678999999999999999988764
No 384
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=78.53 E-value=1 Score=48.00 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=23.3
Q ss_pred cccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 157 IARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 157 ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+.+| ++|.|++|+|||+|+..|+...+
T Consensus 63 ip~G--vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 63 IPKG--VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp CCSE--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence 4455 99999999999999999988764
No 385
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=78.37 E-value=1 Score=40.07 Aligned_cols=22 Identities=5% Similarity=0.058 Sum_probs=20.1
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999998765
No 386
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=78.25 E-value=0.99 Score=41.25 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=20.1
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999998764
No 387
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=78.22 E-value=1.1 Score=39.78 Aligned_cols=22 Identities=9% Similarity=0.075 Sum_probs=19.2
Q ss_pred cEEEeccCCCCChhHHHHHHHH
Q 011350 161 QKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
-|+.|+|.+|+|||+|+..+..
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999988754
No 388
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=78.20 E-value=1 Score=43.25 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=19.6
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++++|.+|+|||||+..++..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999998543
No 389
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=78.19 E-value=1.2 Score=40.89 Aligned_cols=25 Identities=8% Similarity=0.086 Sum_probs=21.7
Q ss_pred CcEEEeccCCCCChhHHHHHHHHHh
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
-.++.|.|.+|+|||+|+..++.+.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999988764
No 390
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=78.17 E-value=0.9 Score=40.25 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=20.6
Q ss_pred CcEEEeccCCCCChhHHHHHHHHH
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
--|+.++|.+|+|||+|+..+..+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999988643
No 391
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=78.04 E-value=1.1 Score=40.23 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=19.8
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999988654
No 392
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=78.02 E-value=0.76 Score=40.32 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=9.5
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999887543
No 393
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=77.96 E-value=0.51 Score=42.93 Aligned_cols=24 Identities=8% Similarity=0.123 Sum_probs=20.8
Q ss_pred EEEeccCCCCChhHHHHHHHHHhc
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
.+.|.|++|+||||++..+++...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999988754
No 394
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=77.94 E-value=1.1 Score=39.40 Aligned_cols=24 Identities=8% Similarity=0.140 Sum_probs=20.7
Q ss_pred cCcEEEeccCCCCChhHHHHHHHH
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
+.-|+.++|.+|+|||+|+..+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 455899999999999999988754
No 395
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=77.92 E-value=0.88 Score=41.07 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=19.1
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.|+|.+|+|||+|+..+..+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 7999999999999999888543
No 396
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=77.78 E-value=1.2 Score=40.38 Aligned_cols=22 Identities=5% Similarity=0.096 Sum_probs=19.9
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+..+
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7999999999999999988654
No 397
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.78 E-value=0.97 Score=44.55 Aligned_cols=27 Identities=7% Similarity=0.084 Sum_probs=23.0
Q ss_pred cccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 157 IARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 157 ig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
-+++..++|.|++|+||||++..+++.
T Consensus 33 ~~~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 33 PRDLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp TTCCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 455555999999999999999999885
No 398
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=77.73 E-value=0.76 Score=40.25 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=20.0
Q ss_pred cCcEEEeccCCCCChhHHHHHHH
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQIC 181 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~ 181 (488)
+.-|+.++|.+|+|||+|+..+.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 45689999999999999998774
No 399
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=77.68 E-value=1.3 Score=39.88 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.1
Q ss_pred cEEEeccCCCCChhHHHHHHHHH
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=++.|+|.+|+|||+|+..+...
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999988643
No 400
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=77.67 E-value=7.4 Score=38.39 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=21.1
Q ss_pred EEEeccCCCCChhHHHHHHHHHhc
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
-+.+.|++|+|||+++..+++...
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCchHHHHHHHHHHHHh
Confidence 378899999999999999988764
No 401
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=77.64 E-value=2.3 Score=43.00 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=23.0
Q ss_pred CcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+.-++|.|++|+|||+|+..+++..+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhc
Confidence 56799999999999999999988754
No 402
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=77.56 E-value=0.91 Score=41.07 Aligned_cols=22 Identities=5% Similarity=0.054 Sum_probs=19.5
Q ss_pred CcEEEeccCCCCChhHHHHHHH
Q 011350 160 GQKIPLFSAAGLPHNEIAAQIC 181 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~ 181 (488)
--|+.++|.+|+|||+|+..+.
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 3489999999999999998874
No 403
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=77.53 E-value=1.3 Score=41.46 Aligned_cols=26 Identities=0% Similarity=0.092 Sum_probs=23.0
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
||..+.|.|..|+||||++..+++..
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46678999999999999999998874
No 404
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=77.49 E-value=1.4 Score=50.42 Aligned_cols=30 Identities=10% Similarity=-0.151 Sum_probs=27.0
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHH
Q 011350 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQIC 181 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~ 181 (488)
|.-+.+.+|+.++|.|+.|.||||++.+++
T Consensus 654 disl~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 654 DVYFEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp EEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred cceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 666788899999999999999999999874
No 405
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=77.48 E-value=1.1 Score=40.69 Aligned_cols=26 Identities=8% Similarity=0.059 Sum_probs=21.3
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.=|+.++|.+|+|||+|+..+..+.
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 34479999999999999998887643
No 406
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=77.39 E-value=1.3 Score=43.90 Aligned_cols=27 Identities=7% Similarity=0.009 Sum_probs=23.0
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 158 ARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
..+.-+.|.|++|+|||+|+..+++..
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 335679999999999999999998765
No 407
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=77.36 E-value=1.4 Score=39.99 Aligned_cols=23 Identities=4% Similarity=-0.065 Sum_probs=19.7
Q ss_pred EEEeccCCCCChhHHHHHHHHHh
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.++|.|.+|+|||||+..+++.-
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 57899999999999998887653
No 408
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=77.23 E-value=1 Score=40.26 Aligned_cols=23 Identities=9% Similarity=0.118 Sum_probs=19.5
Q ss_pred cEEEeccCCCCChhHHHHHHHHH
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=|+.++|.+|+|||+|+..+..+
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999888643
No 409
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=77.11 E-value=1.3 Score=40.21 Aligned_cols=21 Identities=10% Similarity=0.178 Sum_probs=19.0
Q ss_pred EEEeccCCCCChhHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~ 182 (488)
|+.|+|.+|+|||+|+..+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 789999999999999988864
No 410
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=77.06 E-value=1.5 Score=49.41 Aligned_cols=31 Identities=6% Similarity=-0.120 Sum_probs=25.7
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.-+. ..|+.++|.|++|+|||||+.+|+..
T Consensus 600 disl~-~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 600 PLNLS-PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp EEEEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccc-CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 44445 78999999999999999999988653
No 411
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=76.92 E-value=1.2 Score=39.73 Aligned_cols=21 Identities=5% Similarity=0.297 Sum_probs=18.8
Q ss_pred EEEeccCCCCChhHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~ 182 (488)
|+.++|.+|+|||+|+..+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999988753
No 412
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=76.84 E-value=1 Score=40.64 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=18.3
Q ss_pred EEEeccCCCCChhHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQIC 181 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~ 181 (488)
|+.++|.+|+|||+|+..+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999998874
No 413
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=76.64 E-value=1.1 Score=46.61 Aligned_cols=32 Identities=9% Similarity=0.069 Sum_probs=27.3
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.-+.+-.|..++|.|.+|+|||||+..|+..
T Consensus 149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred eeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 44467888999999999999999999998654
No 414
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=76.63 E-value=1.5 Score=42.57 Aligned_cols=24 Identities=4% Similarity=-0.011 Sum_probs=21.6
Q ss_pred CcEEEeccCCCCChhHHHHHHHHH
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+-+.|.|++|+|||+|+.++++.
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH
Confidence 578999999999999999998765
No 415
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=76.58 E-value=1.3 Score=40.67 Aligned_cols=23 Identities=9% Similarity=0.141 Sum_probs=20.3
Q ss_pred cEEEeccCCCCChhHHHHHHHHH
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=|+.|+|.+|+|||+|+..+..+
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 37899999999999999998764
No 416
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=76.58 E-value=1.7 Score=40.95 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=24.2
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 158 ARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
..|..+.|.|++|+|||+|+..+++...
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4577899999999999999999887654
No 417
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=76.52 E-value=0.61 Score=47.43 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=30.7
Q ss_pred cceeeee-eeeecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 146 TGISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 146 TGI~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.+++.++ .=+.+.+| ..+|.|++|+|||||+..|.--.
T Consensus 46 ~nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 46 RNLATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp EEETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred ccccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 4566674 34788999 99999999999999998885544
No 418
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=76.45 E-value=1.4 Score=40.15 Aligned_cols=26 Identities=8% Similarity=0.114 Sum_probs=22.1
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+--++.|.|.+|+|||||+..++.+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999988764
No 419
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=76.42 E-value=1.5 Score=40.13 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=22.6
Q ss_pred CcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+..++|.|++|+||||+...+++..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45689999999999999999988755
No 420
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=76.39 E-value=1.3 Score=39.79 Aligned_cols=22 Identities=5% Similarity=0.111 Sum_probs=19.8
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.+|+|||+|+..+...
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999988764
No 421
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=76.17 E-value=1.3 Score=40.13 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=19.6
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.|+|.+|+|||+|+..+..+
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 7899999999999999888653
No 422
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=76.05 E-value=1.5 Score=44.72 Aligned_cols=24 Identities=8% Similarity=0.192 Sum_probs=21.8
Q ss_pred CcEEEeccCCCCChhHHHHHHHHH
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|-+++|.|.+|+|||||+..+...
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 678999999999999999999764
No 423
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=75.91 E-value=1.1 Score=39.81 Aligned_cols=23 Identities=4% Similarity=0.013 Sum_probs=19.9
Q ss_pred cEEEeccCCCCChhHHHHHHHHH
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
-|+.++|.+|+|||+|+..+..+
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCG
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999887544
No 424
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=75.83 E-value=1.4 Score=42.42 Aligned_cols=25 Identities=12% Similarity=0.211 Sum_probs=22.0
Q ss_pred cEEEeccCCCCChhHHHHHHHHHhc
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
.-+++.|++|+|||+++..|++...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc
Confidence 4689999999999999999988753
No 425
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=75.69 E-value=1.3 Score=39.75 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=19.4
Q ss_pred CcEEEeccCCCCChhHHHHHHH
Q 011350 160 GQKIPLFSAAGLPHNEIAAQIC 181 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~ 181 (488)
.-|+.++|.+|+|||+|+..+.
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999998874
No 426
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=75.67 E-value=1.4 Score=42.87 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=19.3
Q ss_pred EEEeccCCCCChhHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.++|.|++|+||||+...+++
T Consensus 77 iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999984
No 427
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=75.58 E-value=0.61 Score=50.74 Aligned_cols=33 Identities=12% Similarity=0.228 Sum_probs=24.8
Q ss_pred eeeeeeecccCc-----EEEeccCCCCChhHHHHHHHH
Q 011350 150 TIDVMNSIARGQ-----KIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 150 aID~l~pig~Gq-----r~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.||.|-.+|.+. .++|.|++|+|||||+..|+.
T Consensus 30 ~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~G 67 (608)
T 3szr_A 30 LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSG 67 (608)
T ss_dssp HHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHS
T ss_pred HHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhC
Confidence 456555555442 389999999999999999864
No 428
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=75.58 E-value=1.3 Score=40.01 Aligned_cols=23 Identities=4% Similarity=-0.084 Sum_probs=20.2
Q ss_pred cEEEeccCCCCChhHHHHHHHHH
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=|+.++|.+|+|||+|+..+..+
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999888754
No 429
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=75.47 E-value=8.3 Score=40.04 Aligned_cols=26 Identities=15% Similarity=0.023 Sum_probs=23.5
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+|..+.+.|++|+||||++..++...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 78889999999999999999988764
No 430
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=75.34 E-value=1.4 Score=41.69 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.8
Q ss_pred cEEEeccCCCCChhHHHHHHHHHh
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
-+++|+|.+|+|||+|+..+....
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999986543
No 431
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=75.24 E-value=1.2 Score=46.27 Aligned_cols=21 Identities=10% Similarity=0.254 Sum_probs=18.4
Q ss_pred EEeccCCCCChhHHHHHHHHH
Q 011350 163 IPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 163 ~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
++|.|++|+|||||+..|+..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 499999999999999998643
No 432
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=75.06 E-value=1.4 Score=40.58 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.5
Q ss_pred cEEEeccCCCCChhHHHHHHHH
Q 011350 161 QKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
-|+.++|.+|+|||+|+..+..
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999988854
No 433
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=75.03 E-value=0.81 Score=40.88 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=5.0
Q ss_pred cEEEeccCCCCChhHHHHHHHHH
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
-|+.++|.+|+|||+|+..+..+
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999887654
No 434
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=75.02 E-value=1.5 Score=41.59 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.0
Q ss_pred cEEEeccCCCCChhHHHHHHHHH
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
-|+.++|.+|+|||+|+..|..+
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 37899999999999999988654
No 435
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=75.01 E-value=1.5 Score=46.36 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=21.4
Q ss_pred EEeccCCCCChhHHHHHHHHHhc
Q 011350 163 IPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 163 ~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
++|.|++|+|||+|+..++...+
T Consensus 52 vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999998765
No 436
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=74.67 E-value=1.6 Score=40.50 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=18.9
Q ss_pred cEEEeccCCCCChhHHHHHHH
Q 011350 161 QKIPLFSAAGLPHNEIAAQIC 181 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~ 181 (488)
-|+.|.|.+|+|||+|+..+.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999998875
No 437
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=74.65 E-value=1.5 Score=40.19 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=19.8
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.|+|.+|+|||+|+..+..+
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999988654
No 438
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=74.58 E-value=1.5 Score=39.99 Aligned_cols=21 Identities=14% Similarity=0.234 Sum_probs=19.1
Q ss_pred EEEeccCCCCChhHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~ 182 (488)
|+.++|.+|+|||+|+..+..
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 799999999999999988864
No 439
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=74.51 E-value=1.3 Score=50.55 Aligned_cols=31 Identities=6% Similarity=-0.110 Sum_probs=27.0
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011350 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
|.-+.+.+|+-++|.|+.|.|||||+.+++.
T Consensus 665 dvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 665 NTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp EEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred cccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 5556778899999999999999999998753
No 440
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=74.40 E-value=1.7 Score=43.39 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=22.7
Q ss_pred CcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+..+.+.|++|+|||+++..|++..+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 45689999999999999999988764
No 441
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=74.39 E-value=1.6 Score=42.37 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=19.8
Q ss_pred cEEEeccCCCCChhHHHHHHHH
Q 011350 161 QKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
-++.+.|.+|+|||+|+..++.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 4789999999999999999864
No 442
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=74.22 E-value=1.7 Score=44.37 Aligned_cols=29 Identities=21% Similarity=0.431 Sum_probs=24.3
Q ss_pred cccCcE--EEeccCCCCChhHHHHHHHHHhc
Q 011350 157 IARGQK--IPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 157 ig~Gqr--~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+-.|++ +.|.|++|+||||+...|++..+
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 445666 99999999999999998887655
No 443
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=74.03 E-value=1.6 Score=43.23 Aligned_cols=22 Identities=9% Similarity=0.320 Sum_probs=20.3
Q ss_pred EEeccCCCCChhHHHHHHHHHh
Q 011350 163 IPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 163 ~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+++.|++|+|||+++..+++..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998874
No 444
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=73.97 E-value=1.2 Score=43.70 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=24.1
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 158 ARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
..|.-+.+.|++|+|||+|+..+++..+
T Consensus 44 ~~~~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 44 CTGGHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp HHTCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred HcCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 3467899999999999999999988654
No 445
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=73.80 E-value=2 Score=42.18 Aligned_cols=26 Identities=15% Similarity=0.023 Sum_probs=23.4
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+|+.+++.|.+|+||||++..++...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998887654
No 446
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=73.70 E-value=1.5 Score=47.42 Aligned_cols=30 Identities=7% Similarity=0.182 Sum_probs=26.2
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.+-.|+.++|.|++|+|||||+..|++..
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 345678899999999999999999998865
No 447
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=73.51 E-value=1.7 Score=40.63 Aligned_cols=22 Identities=5% Similarity=0.208 Sum_probs=19.6
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.|+|.+|||||+|+..+..+
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 7999999999999999887654
No 448
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=73.47 E-value=1.8 Score=48.71 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=25.3
Q ss_pred cccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 157 IARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 157 ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+-.|..++|.|++|+|||+|+..|+...+
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 45688899999999999999999987654
No 449
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=73.19 E-value=15 Score=37.01 Aligned_cols=24 Identities=4% Similarity=0.004 Sum_probs=19.7
Q ss_pred CcE-EEeccCCCCChhHHHHHHHHH
Q 011350 160 GQK-IPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 160 Gqr-~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|-+ ++|+|.+|+|||||++.++..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCC
Confidence 444 899999999999999998643
No 450
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=73.11 E-value=6.1 Score=44.42 Aligned_cols=25 Identities=12% Similarity=0.244 Sum_probs=21.7
Q ss_pred CcEEEeccCCCCChhHHHHHHHHHh
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
...+.+.|++|+|||+|+..+++..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4458999999999999999988765
No 451
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=72.99 E-value=2.1 Score=38.87 Aligned_cols=26 Identities=4% Similarity=-0.129 Sum_probs=20.9
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+|+-..+.|++|+||||++-+++++.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46778899999999999986666553
No 452
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.97 E-value=1.9 Score=42.15 Aligned_cols=24 Identities=4% Similarity=0.230 Sum_probs=21.2
Q ss_pred cEEEeccCCCCChhHHHHHHHHHh
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
..+.+.|++|+|||+++..+++..
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 349999999999999999998874
No 453
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=72.85 E-value=1.7 Score=44.92 Aligned_cols=23 Identities=9% Similarity=0.205 Sum_probs=20.5
Q ss_pred cEEEeccCCCCChhHHHHHHHHH
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
-|++|.|.+|+|||||+..+...
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998654
No 454
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=72.82 E-value=1.7 Score=44.39 Aligned_cols=23 Identities=4% Similarity=0.176 Sum_probs=20.6
Q ss_pred EEEeccCCCCChhHHHHHHHHHh
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+++|.|.+|+|||||+..+.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998763
No 455
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=72.78 E-value=1.7 Score=42.15 Aligned_cols=24 Identities=4% Similarity=-0.121 Sum_probs=21.5
Q ss_pred cEEEeccCCCCChhHHHHHHHHHh
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+-+.|.|++|+|||+|+..+++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999988764
No 456
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=72.45 E-value=2.2 Score=44.37 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=23.2
Q ss_pred CcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+..+++.|++|+|||+|+..+++..+
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 45699999999999999999998875
No 457
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=72.27 E-value=1.9 Score=38.66 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=18.4
Q ss_pred EEEeccCCCCChhHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~ 182 (488)
|+.++|.+|+|||+|+..+..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999986644
No 458
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=72.06 E-value=7.6 Score=38.23 Aligned_cols=26 Identities=12% Similarity=0.042 Sum_probs=22.0
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+..-+.+.|++|+|||+++..+++..
T Consensus 17 ~~~~~Lf~Gp~G~GKtt~a~~la~~~ 42 (305)
T 2gno_A 17 EGISILINGEDLSYPREVSLELPEYV 42 (305)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhC
Confidence 34568899999999999999998864
No 459
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=71.79 E-value=2.1 Score=42.92 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=22.6
Q ss_pred CcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
...+.+.|++|+|||+|+..+++..+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34699999999999999999988764
No 460
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=71.75 E-value=2.3 Score=47.65 Aligned_cols=24 Identities=4% Similarity=-0.097 Sum_probs=21.9
Q ss_pred CcEEEeccCCCCChhHHHHHHHHH
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|+.++|.|++|+|||||+.+|+..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 999999999999999999988653
No 461
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=71.62 E-value=1.3 Score=39.08 Aligned_cols=23 Identities=9% Similarity=0.167 Sum_probs=19.7
Q ss_pred cCcEEEeccCCCCChhHHHHHHH
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQIC 181 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~ 181 (488)
+-=|+.++|.+|+|||+|+..+.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999998873
No 462
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=71.57 E-value=2.5 Score=40.67 Aligned_cols=27 Identities=11% Similarity=0.186 Sum_probs=22.6
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 158 ARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
++...+.+.|++|+|||+++..+++..
T Consensus 44 ~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 44 GSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp TCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 344459999999999999999998874
No 463
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=71.56 E-value=3.7 Score=46.26 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.6
Q ss_pred EEEeccCCCCChhHHHHHHHHHhc
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
-+++.|++|+|||+|+..+|+..+
T Consensus 240 GILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp EEEEECCTTSCHHHHHHHHHTTTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999988765
No 464
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=71.49 E-value=2.1 Score=41.04 Aligned_cols=21 Identities=10% Similarity=0.203 Sum_probs=19.2
Q ss_pred EEEeccCCCCChhHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~ 182 (488)
++.++|.+|+|||+|+..++.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 689999999999999999864
No 465
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=70.99 E-value=1.9 Score=42.48 Aligned_cols=25 Identities=0% Similarity=0.052 Sum_probs=21.1
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHH
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+-.++.|+|.+|+|||||+..+..+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3347999999999999999998654
No 466
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=70.96 E-value=2.7 Score=42.62 Aligned_cols=36 Identities=6% Similarity=0.121 Sum_probs=27.0
Q ss_pred cceeeeee-eeecccCcEEEeccCCCCChhHHHHHHHH
Q 011350 146 TGISTIDV-MNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 146 TGI~aID~-l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.+.+.++. -+.+..| -.+|+|+.|+|||+|+..|.-
T Consensus 12 ~~~~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 12 LNYRNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp ESBTTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred eCccceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 34455532 3556677 899999999999999988864
No 467
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=70.76 E-value=1.3 Score=40.53 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=18.2
Q ss_pred EEEeccCCCCChhHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~ 182 (488)
|+.++|.+|+|||+|+..+..
T Consensus 17 ki~v~G~~~~GKSsli~~~~~ 37 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLT 37 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999988443
No 468
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=70.55 E-value=1.8 Score=41.84 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=19.8
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++++|.+|+|||+|+..+..+
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998654
No 469
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=70.51 E-value=0.84 Score=43.45 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=20.1
Q ss_pred cEEEeccCCCCChhHHHHHHHHH
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+..+|.|++|+|||||+.+|+..
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 56789999999999999998654
No 470
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=70.40 E-value=2.2 Score=40.31 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=21.7
Q ss_pred CcEEEeccCCCCChhHHHHHHHHHh
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.-+.|.|++|+|||+|+..+++..
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhc
Confidence 4568999999999999999987764
No 471
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=70.24 E-value=2.7 Score=42.20 Aligned_cols=27 Identities=4% Similarity=0.170 Sum_probs=22.9
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 158 ARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
++.-+++|.|.+|+|||||+..++...
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 455689999999999999999887653
No 472
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=69.94 E-value=2.4 Score=42.88 Aligned_cols=24 Identities=8% Similarity=0.231 Sum_probs=21.7
Q ss_pred EEEeccCCCCChhHHHHHHHHHhc
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
-++|.|++|+|||+|...|++..+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 589999999999999999998765
No 473
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=72.79 E-value=0.93 Score=40.84 Aligned_cols=24 Identities=4% Similarity=0.021 Sum_probs=20.3
Q ss_pred cCcEEEeccCCCCChhHHHHHHHH
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
+.=|+.++|.+|+|||+|+..+..
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 445799999999999999987754
No 474
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=69.88 E-value=1.8 Score=42.45 Aligned_cols=26 Identities=8% Similarity=0.059 Sum_probs=22.3
Q ss_pred CcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+.-+.|.|++|+|||+|+..+++..+
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CceEEEECCCCccHHHHHHHHHHhCc
Confidence 34499999999999999999988754
No 475
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=69.74 E-value=1.1 Score=40.78 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=20.8
Q ss_pred CcEEEeccCCCCChhHHHHHHHHH
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
--|+.|+|.+|+|||+|+..+..+
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 457999999999999999988654
No 476
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=69.61 E-value=2.2 Score=40.84 Aligned_cols=22 Identities=5% Similarity=0.057 Sum_probs=19.6
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
++.++|.+|+|||+|+..+...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 7899999999999999998654
No 477
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=69.54 E-value=2.3 Score=40.23 Aligned_cols=27 Identities=4% Similarity=-0.004 Sum_probs=22.2
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 158 ARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.+.-.+.|.|++|+|||++...+++..
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 343469999999999999998887764
No 478
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=69.33 E-value=2.6 Score=38.89 Aligned_cols=27 Identities=7% Similarity=0.156 Sum_probs=22.3
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 158 ARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
..|.-++|.|++|+|||||+..+.+..
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHTT
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 457779999999999999988876643
No 479
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=69.31 E-value=2.4 Score=40.82 Aligned_cols=22 Identities=14% Similarity=0.113 Sum_probs=19.8
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.+.|.|.+|+||||+...+++.
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999999874
No 480
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=69.18 E-value=2.4 Score=44.02 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.8
Q ss_pred cEEEeccCCCCChhHHHHHHHHHh
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.-++|.|++|+|||+|+..+++..
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 568999999999999999998875
No 481
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=69.00 E-value=15 Score=38.91 Aligned_cols=27 Identities=7% Similarity=0.100 Sum_probs=21.7
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 158 ARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.+...+.|.|.+|+||||++..++...
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345679999999999999999998654
No 482
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=69.00 E-value=2.2 Score=40.90 Aligned_cols=25 Identities=12% Similarity=0.339 Sum_probs=18.3
Q ss_pred cccCc--EEEeccCCCCChhHHHHHHH
Q 011350 157 IARGQ--KIPLFSAAGLPHNEIAAQIC 181 (488)
Q Consensus 157 ig~Gq--r~gIfg~~G~GKt~Ll~~i~ 181 (488)
+-+|- ++.++|.+|+|||+|+..|.
T Consensus 3 ~~~g~~~~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 3 LGSGFEFTLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp ----CEEEEEEEECTTSSHHHHHHHHS
T ss_pred CcCccEEEEEEECCCCCCHHHHHHHHh
Confidence 34453 68999999999999998863
No 483
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=68.92 E-value=2.7 Score=39.84 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=21.6
Q ss_pred cccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 157 IARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 157 ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+-+|.-+-|.|++|+||||++..++++-.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35788899999999999999999887654
No 484
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=68.19 E-value=2.3 Score=40.76 Aligned_cols=23 Identities=4% Similarity=0.170 Sum_probs=20.4
Q ss_pred cEEEeccCCCCChhHHHHHHHHH
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
-++.|+|.+|+|||+|+..+...
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CeEEEEeCCCCCHHHHHHHHHCC
Confidence 48999999999999999998654
No 485
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=68.01 E-value=2.7 Score=39.48 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.3
Q ss_pred EEEeccCCCCChhHHHHHHHHHhc
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
-+|+.|+.|+||||+..+++. .|
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g 33 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RG 33 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TT
T ss_pred EEEEECCCCCCHHHHHHHHHH-CC
Confidence 489999999999999999977 44
No 486
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=67.95 E-value=2.6 Score=41.35 Aligned_cols=23 Identities=0% Similarity=0.115 Sum_probs=20.1
Q ss_pred cEEEeccCCCCChhHHHHHHHHH
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+.|+|.+|+|||||+..+..+
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 57899999999999999988654
No 487
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=67.70 E-value=2.6 Score=40.32 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=19.3
Q ss_pred EEEeccCCCCChhHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~ 182 (488)
|+.++|.+|+|||+|+..+..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 799999999999999999864
No 488
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=67.69 E-value=3.2 Score=43.90 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=23.0
Q ss_pred CcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
..-+.|.|++|+|||+|+..+++..+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998765
No 489
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=67.67 E-value=1.4 Score=41.85 Aligned_cols=27 Identities=11% Similarity=0.083 Sum_probs=22.5
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 158 ARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.++..|.|.|..|+||||++..|++.-
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 466789999999999999998887653
No 490
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=67.49 E-value=2.7 Score=43.60 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=20.4
Q ss_pred EEEeccCCCCChhHHHHHHHHHh
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
-+.|.|++|+|||+++..++++.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 89999999999999998877654
No 491
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=67.42 E-value=2.7 Score=40.06 Aligned_cols=24 Identities=4% Similarity=0.200 Sum_probs=20.6
Q ss_pred cEEEeccCCCCChhHHHHHHHHHh
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
-|++++|.+|+|||+|+..+..+.
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999986543
No 492
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=67.33 E-value=3 Score=39.92 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=21.9
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHh
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+...+.+.|++|+|||+++..+++..
T Consensus 37 ~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 37 NIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 33349999999999999999998864
No 493
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=67.31 E-value=3.5 Score=38.52 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=23.5
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 159 RGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+|.-+-|.|++|+||||++..++.+-.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 577889999999999999999987653
No 494
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=67.27 E-value=3.2 Score=42.59 Aligned_cols=27 Identities=7% Similarity=0.122 Sum_probs=23.4
Q ss_pred cccCcEEEeccCCCCChhHHHHHHHHH
Q 011350 157 IARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 157 ig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+..|+-.+|.|++|+|||+|+..|..-
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 556889999999999999999988653
No 495
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=67.03 E-value=2.6 Score=41.66 Aligned_cols=22 Identities=14% Similarity=0.087 Sum_probs=19.6
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.++|.|.+|+|||||+..|...
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 5789999999999999999865
No 496
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=66.71 E-value=3.2 Score=39.80 Aligned_cols=24 Identities=4% Similarity=0.122 Sum_probs=21.1
Q ss_pred cEEEeccCCCCChhHHHHHHHHHh
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
..+.|.|++|+|||+++..+++..
T Consensus 43 ~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 349999999999999999998874
No 497
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=66.51 E-value=2.7 Score=40.63 Aligned_cols=23 Identities=9% Similarity=0.179 Sum_probs=20.2
Q ss_pred cEEEeccCCCCChhHHHHHHHHH
Q 011350 161 QKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
-+++|+|.+|+|||+|+..+...
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTS
T ss_pred CeEEEEcCCCCCHHHHHHHHHCC
Confidence 37999999999999999998654
No 498
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=66.42 E-value=2.5 Score=38.23 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=18.1
Q ss_pred EEEeccCCCCChhHHHHHHH
Q 011350 162 KIPLFSAAGLPHNEIAAQIC 181 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~ 181 (488)
|+.|+|.+|+|||+|+..+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~ 32 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVL 32 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999997765
No 499
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=65.98 E-value=0.99 Score=38.98 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=19.2
Q ss_pred CcEEEeccCCCCChhHHHHHHHH
Q 011350 160 GQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
+.-+.|.|++|+|||+++..|++
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCC
T ss_pred CCcEEEECCCCccHHHHHHHHHH
Confidence 45699999999999999877644
No 500
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=65.96 E-value=2.5 Score=47.47 Aligned_cols=29 Identities=10% Similarity=0.281 Sum_probs=25.3
Q ss_pred cccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011350 157 IARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 157 ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+-.|..+++.|++|+|||+|+..+++..+
T Consensus 508 ~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred CCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 34677899999999999999999998765
Done!