Query 011351
Match_columns 488
No_of_seqs 391 out of 3452
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 00:23:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09754 phenylpropionate diox 100.0 7.7E-58 1.7E-62 457.3 49.1 391 50-469 2-394 (396)
2 KOG1336 Monodehydroascorbate/f 100.0 4.3E-55 9.4E-60 416.4 37.0 401 51-477 74-476 (478)
3 PRK14989 nitrite reductase sub 100.0 2.5E-48 5.5E-53 414.9 47.8 381 51-461 3-394 (847)
4 TIGR02374 nitri_red_nirB nitri 100.0 2.8E-48 6E-53 415.6 46.2 377 54-461 1-383 (785)
5 PRK04965 NADH:flavorubredoxin 100.0 8.8E-48 1.9E-52 382.7 44.2 362 51-446 2-367 (377)
6 COG1251 NirB NAD(P)H-nitrite r 100.0 3.7E-48 8E-53 385.0 32.3 381 50-461 2-388 (793)
7 PRK13512 coenzyme A disulfide 100.0 6.7E-46 1.5E-50 375.2 41.8 391 52-472 2-424 (438)
8 PRK09564 coenzyme A disulfide 100.0 1.3E-45 2.9E-50 375.6 41.3 398 53-475 2-433 (444)
9 COG1249 Lpd Pyruvate/2-oxoglut 100.0 3.3E-43 7.2E-48 348.2 33.8 396 49-479 2-454 (454)
10 COG1252 Ndh NADH dehydrogenase 100.0 1E-43 2.2E-48 342.8 28.2 308 50-388 2-340 (405)
11 PRK06370 mercuric reductase; V 100.0 1.1E-42 2.4E-47 355.0 35.8 403 48-484 2-458 (463)
12 PRK05249 soluble pyridine nucl 100.0 2.8E-42 6E-47 352.6 38.8 403 48-484 2-458 (461)
13 TIGR01421 gluta_reduc_1 glutat 100.0 1.5E-41 3.2E-46 344.1 35.8 392 50-478 1-449 (450)
14 PLN02507 glutathione reductase 100.0 9E-41 2E-45 341.4 40.8 396 49-479 23-483 (499)
15 PRK14694 putative mercuric red 100.0 1.9E-41 4.1E-46 345.9 35.6 401 48-483 3-457 (468)
16 PRK06116 glutathione reductase 100.0 8E-41 1.7E-45 340.4 39.5 393 50-479 3-450 (450)
17 PRK06467 dihydrolipoamide dehy 100.0 2.6E-41 5.7E-46 344.3 35.7 403 49-485 2-461 (471)
18 PRK06416 dihydrolipoamide dehy 100.0 2.3E-41 5.1E-46 345.6 34.9 401 50-484 3-457 (462)
19 TIGR01424 gluta_reduc_2 glutat 100.0 6.5E-41 1.4E-45 339.9 37.2 391 51-478 2-445 (446)
20 PRK08010 pyridine nucleotide-d 100.0 6.8E-41 1.5E-45 340.0 36.1 396 50-480 2-438 (441)
21 PRK06115 dihydrolipoamide dehy 100.0 1.2E-40 2.6E-45 339.3 36.9 403 50-485 2-462 (466)
22 PRK05976 dihydrolipoamide dehy 100.0 2.5E-40 5.4E-45 338.3 37.2 401 50-482 3-465 (472)
23 TIGR02053 MerA mercuric reduct 100.0 2.7E-40 5.9E-45 337.7 36.6 396 52-483 1-452 (463)
24 PRK07845 flavoprotein disulfid 100.0 1.5E-40 3.2E-45 338.6 34.5 400 51-483 1-460 (466)
25 PTZ00058 glutathione reductase 100.0 8.4E-40 1.8E-44 335.2 38.0 408 49-482 46-560 (561)
26 PRK07818 dihydrolipoamide dehy 100.0 3.2E-40 6.9E-45 337.0 34.4 399 50-485 3-462 (466)
27 PTZ00318 NADH dehydrogenase-li 100.0 8.8E-41 1.9E-45 336.5 29.7 308 49-389 8-358 (424)
28 PLN02546 glutathione reductase 100.0 2.3E-40 5E-45 339.6 32.6 393 50-479 78-532 (558)
29 PRK13748 putative mercuric red 100.0 1.1E-39 2.5E-44 341.2 35.7 397 50-483 97-550 (561)
30 PRK07251 pyridine nucleotide-d 100.0 1.2E-39 2.6E-44 330.5 34.0 393 50-479 2-436 (438)
31 PRK07846 mycothione reductase; 100.0 7.7E-39 1.7E-43 324.1 38.8 394 51-482 1-449 (451)
32 TIGR03385 CoA_CoA_reduc CoA-di 100.0 1.7E-38 3.6E-43 321.5 40.2 371 65-461 1-403 (427)
33 TIGR01423 trypano_reduc trypan 100.0 2.2E-39 4.7E-44 329.1 33.6 393 50-479 2-471 (486)
34 PRK14727 putative mercuric red 100.0 3.7E-39 8.1E-44 329.5 34.4 399 49-482 14-467 (479)
35 PTZ00153 lipoamide dehydrogena 100.0 7.7E-39 1.7E-43 332.0 37.0 307 150-483 261-654 (659)
36 PRK09853 putative selenate red 100.0 4.4E-40 9.6E-45 348.6 26.3 345 3-393 479-856 (1019)
37 TIGR01438 TGR thioredoxin and 100.0 3.4E-38 7.4E-43 321.3 39.1 394 51-481 2-470 (484)
38 TIGR01350 lipoamide_DH dihydro 100.0 1.4E-38 3.1E-43 325.4 36.1 401 51-484 1-456 (461)
39 PRK06912 acoL dihydrolipoamide 100.0 1.9E-38 4E-43 323.0 36.7 397 53-484 2-453 (458)
40 TIGR03452 mycothione_red mycot 100.0 1.6E-38 3.5E-43 322.1 35.6 317 133-482 105-452 (452)
41 PRK06292 dihydrolipoamide dehy 100.0 7.5E-39 1.6E-43 327.2 33.1 396 50-485 2-456 (460)
42 TIGR01316 gltA glutamate synth 100.0 4.5E-40 9.7E-45 333.0 22.5 332 3-376 68-447 (449)
43 PRK06327 dihydrolipoamide dehy 100.0 3.3E-38 7E-43 322.5 34.0 400 50-483 3-469 (475)
44 PRK12831 putative oxidoreducta 100.0 1.9E-39 4.1E-44 328.8 24.3 333 3-376 80-458 (464)
45 KOG1346 Programmed cell death 100.0 2.2E-39 4.8E-44 300.4 21.0 406 49-461 176-646 (659)
46 PTZ00052 thioredoxin reductase 100.0 7.1E-38 1.5E-42 320.4 33.5 393 51-479 5-478 (499)
47 TIGR03169 Nterm_to_SelD pyridi 100.0 1.2E-37 2.6E-42 309.1 30.6 293 53-376 1-308 (364)
48 PRK12779 putative bifunctional 100.0 5.2E-37 1.1E-41 331.0 27.4 332 3-376 240-624 (944)
49 PRK11749 dihydropyrimidine deh 100.0 3.6E-37 7.9E-42 313.5 23.2 331 3-376 80-449 (457)
50 KOG1335 Dihydrolipoamide dehyd 100.0 1.1E-36 2.4E-41 280.2 23.4 403 50-484 38-500 (506)
51 TIGR03315 Se_ygfK putative sel 100.0 1.6E-36 3.5E-41 323.4 25.2 326 3-377 477-838 (1012)
52 PRK12778 putative bifunctional 100.0 1.6E-36 3.6E-41 325.5 23.9 332 3-376 369-747 (752)
53 PRK12810 gltD glutamate syntha 100.0 2.6E-36 5.5E-41 307.7 21.5 337 3-376 84-462 (471)
54 TIGR01318 gltD_gamma_fam gluta 100.0 1.9E-35 4.1E-40 300.1 23.1 332 3-376 80-463 (467)
55 PRK12814 putative NADPH-depend 100.0 1.8E-35 3.8E-40 311.3 23.2 332 3-376 134-498 (652)
56 PRK12775 putative trifunctiona 100.0 2.4E-35 5.2E-40 321.0 23.6 332 3-375 371-751 (1006)
57 TIGR01292 TRX_reduct thioredox 100.0 4.5E-34 9.7E-39 276.3 28.6 285 52-376 1-298 (300)
58 PRK12769 putative oxidoreducta 100.0 1.9E-34 4E-39 305.0 25.8 332 3-376 266-649 (654)
59 TIGR03140 AhpF alkyl hydropero 100.0 3.8E-34 8.2E-39 294.7 22.7 269 49-348 210-491 (515)
60 TIGR01317 GOGAT_sm_gam glutama 100.0 4.1E-34 8.8E-39 291.5 22.5 337 3-376 84-476 (485)
61 PRK10262 thioredoxin reductase 100.0 6.5E-34 1.4E-38 277.1 22.5 274 48-347 3-292 (321)
62 PRK13984 putative oxidoreducta 100.0 1.7E-33 3.7E-38 296.2 24.6 327 4-376 224-599 (604)
63 COG0446 HcaD Uncharacterized N 100.0 1.2E-31 2.5E-36 271.4 35.1 323 54-395 1-327 (415)
64 PRK12809 putative oxidoreducta 100.0 2.7E-33 5.8E-38 294.8 23.9 332 3-376 249-632 (639)
65 COG0492 TrxB Thioredoxin reduc 100.0 4E-33 8.7E-38 263.8 21.7 266 50-348 2-279 (305)
66 KOG0405 Pyridine nucleotide-di 100.0 2.3E-32 4.9E-37 248.8 25.4 389 49-475 18-468 (478)
67 PRK15317 alkyl hydroperoxide r 100.0 1.7E-32 3.7E-37 282.9 26.5 270 49-348 209-490 (517)
68 TIGR03143 AhpF_homolog putativ 100.0 8.7E-32 1.9E-36 279.1 28.4 285 50-374 3-304 (555)
69 KOG2495 NADH-dehydrogenase (ub 100.0 4.6E-32 1E-36 254.1 19.1 295 48-375 52-393 (491)
70 PRK12771 putative glutamate sy 100.0 9.5E-32 2.1E-36 280.2 22.0 330 3-375 79-440 (564)
71 PRK12770 putative glutamate sy 100.0 1.6E-30 3.5E-35 256.1 24.6 289 49-376 16-347 (352)
72 PLN02852 ferredoxin-NADP+ redu 100.0 4.8E-27 1E-31 235.8 25.7 299 49-375 24-422 (491)
73 KOG4716 Thioredoxin reductase 99.9 2.5E-26 5.5E-31 208.6 22.0 295 160-475 159-484 (503)
74 TIGR01372 soxA sarcosine oxida 99.9 8E-26 1.7E-30 248.2 29.0 280 51-375 163-468 (985)
75 PRK06567 putative bifunctional 99.9 6.3E-26 1.4E-30 237.8 19.9 287 2-311 309-732 (1028)
76 KOG0404 Thioredoxin reductase 99.9 1.4E-25 3.1E-30 192.5 15.6 276 50-346 7-295 (322)
77 COG3634 AhpF Alkyl hydroperoxi 99.9 1E-25 2.3E-30 205.4 14.3 272 49-350 209-495 (520)
78 PLN02172 flavin-containing mon 99.9 5E-24 1.1E-28 214.9 21.4 289 49-379 8-353 (461)
79 COG0493 GltD NADPH-dependent g 99.9 7.5E-25 1.6E-29 217.7 14.9 337 3-375 62-447 (457)
80 KOG3851 Sulfide:quinone oxidor 99.9 1.8E-22 3.9E-27 182.4 15.5 295 48-375 36-357 (446)
81 KOG2755 Oxidoreductase [Genera 99.9 3E-22 6.5E-27 176.2 14.1 267 53-346 1-322 (334)
82 KOG0399 Glutamate synthase [Am 99.9 8.8E-22 1.9E-26 201.7 13.2 316 4-348 1727-2099(2142)
83 PF00743 FMO-like: Flavin-bind 99.9 1.7E-21 3.7E-26 199.0 14.8 300 51-378 1-396 (531)
84 PF07992 Pyr_redox_2: Pyridine 99.8 1.7E-22 3.7E-27 183.4 -1.6 188 53-347 1-200 (201)
85 PF13738 Pyr_redox_3: Pyridine 99.7 2.4E-17 5.2E-22 149.7 10.4 177 55-241 1-201 (203)
86 COG1148 HdrA Heterodisulfide r 99.7 5E-16 1.1E-20 148.6 18.9 177 160-345 298-522 (622)
87 PTZ00188 adrenodoxin reductase 99.7 1.6E-15 3.4E-20 150.2 19.0 290 48-374 36-439 (506)
88 PF13434 K_oxygenase: L-lysine 99.7 8.4E-16 1.8E-20 149.3 16.6 249 51-306 2-340 (341)
89 KOG1399 Flavin-containing mono 99.7 4.5E-16 9.8E-21 154.4 13.2 242 48-316 3-278 (448)
90 COG3486 IucD Lysine/ornithine 99.7 6.4E-14 1.4E-18 132.5 24.8 292 48-345 2-387 (436)
91 COG2072 TrkA Predicted flavopr 99.6 1.5E-15 3.3E-20 152.9 14.3 189 48-242 5-210 (443)
92 KOG1800 Ferredoxin/adrenodoxin 99.6 6.9E-15 1.5E-19 136.9 15.8 157 48-227 17-179 (468)
93 PRK05329 anaerobic glycerol-3- 99.6 5.5E-14 1.2E-18 139.6 22.4 159 210-376 218-418 (422)
94 COG4529 Uncharacterized protei 99.5 1.8E-12 3.9E-17 126.2 24.0 313 51-375 1-459 (474)
95 PF00070 Pyr_redox: Pyridine n 99.5 6.9E-13 1.5E-17 100.6 11.4 80 209-291 1-80 (80)
96 PRK09897 hypothetical protein; 99.4 3.8E-10 8.3E-15 115.5 26.7 170 51-229 1-213 (534)
97 COG0029 NadB Aspartate oxidase 99.3 1.3E-12 2.8E-17 126.9 6.1 297 53-377 9-396 (518)
98 COG2081 Predicted flavoprotein 99.2 4.3E-11 9.3E-16 113.8 8.9 122 49-173 1-166 (408)
99 TIGR03378 glycerol3P_GlpB glyc 99.2 2E-09 4.3E-14 106.0 20.5 126 244-374 258-418 (419)
100 PRK08401 L-aspartate oxidase; 99.1 3.3E-10 7.1E-15 115.8 10.7 34 51-87 1-34 (466)
101 PRK07804 L-aspartate oxidase; 99.0 1.8E-09 3.9E-14 112.3 13.2 37 49-88 14-50 (541)
102 PRK06175 L-aspartate oxidase; 99.0 1.1E-09 2.3E-14 110.9 10.7 55 320-375 330-384 (433)
103 COG0579 Predicted dehydrogenas 99.0 7.2E-09 1.6E-13 102.0 14.7 68 250-319 154-222 (429)
104 TIGR00551 nadB L-aspartate oxi 99.0 5.1E-09 1.1E-13 107.8 13.5 56 320-376 332-387 (488)
105 COG3075 GlpB Anaerobic glycero 99.0 1.1E-08 2.3E-13 94.4 12.9 107 243-350 252-393 (421)
106 PRK08071 L-aspartate oxidase; 98.9 9.1E-10 2E-14 113.6 6.1 55 321-376 332-386 (510)
107 PF03486 HI0933_like: HI0933-l 98.9 5.5E-10 1.2E-14 110.9 4.2 120 52-174 1-166 (409)
108 PRK08275 putative oxidoreducta 98.9 1.3E-08 2.9E-13 106.3 14.1 38 50-88 8-45 (554)
109 PRK06452 sdhA succinate dehydr 98.9 2.1E-07 4.6E-12 97.3 23.0 35 50-87 4-38 (566)
110 PRK09231 fumarate reductase fl 98.9 1.6E-08 3.5E-13 105.9 14.3 36 51-87 4-39 (582)
111 TIGR01176 fum_red_Fp fumarate 98.9 7.3E-09 1.6E-13 108.3 11.6 37 51-88 3-39 (580)
112 PRK09077 L-aspartate oxidase; 98.9 1.3E-08 2.8E-13 105.9 12.6 56 320-376 352-407 (536)
113 PRK05945 sdhA succinate dehydr 98.9 5.8E-09 1.2E-13 109.4 10.0 38 50-88 2-39 (575)
114 PRK07395 L-aspartate oxidase; 98.9 1.4E-08 3E-13 105.6 12.3 55 320-375 346-400 (553)
115 TIGR01812 sdhA_frdA_Gneg succi 98.8 5E-08 1.1E-12 102.5 15.3 33 53-88 1-33 (566)
116 PLN00128 Succinate dehydrogena 98.8 3.9E-08 8.4E-13 103.7 14.1 50 35-87 30-83 (635)
117 PRK06069 sdhA succinate dehydr 98.8 2.3E-08 5.1E-13 105.0 12.3 40 49-88 3-42 (577)
118 PRK12842 putative succinate de 98.8 4.2E-09 9.2E-14 110.5 6.8 103 205-308 155-276 (574)
119 PRK08205 sdhA succinate dehydr 98.8 9.3E-08 2E-12 100.5 16.5 35 49-87 3-37 (583)
120 PRK13800 putative oxidoreducta 98.8 1.5E-08 3.2E-13 111.6 10.8 36 50-88 12-47 (897)
121 PRK07573 sdhA succinate dehydr 98.8 6.4E-09 1.4E-13 109.9 7.5 35 50-87 34-68 (640)
122 PLN02815 L-aspartate oxidase 98.8 2.2E-07 4.7E-12 97.2 18.6 35 50-88 28-62 (594)
123 PRK06847 hypothetical protein; 98.8 1.8E-08 3.9E-13 100.6 10.0 123 50-175 3-164 (375)
124 PF14759 Reductase_C: Reductas 98.8 6E-08 1.3E-12 73.9 9.9 77 387-471 1-80 (85)
125 PRK07512 L-aspartate oxidase; 98.8 2.4E-07 5.2E-12 95.9 17.2 34 50-88 8-41 (513)
126 PRK06854 adenylylsulfate reduc 98.8 1.1E-07 2.3E-12 100.3 14.6 35 51-88 11-47 (608)
127 PF01266 DAO: FAD dependent ox 98.8 6.1E-08 1.3E-12 95.8 12.1 67 248-317 146-212 (358)
128 PRK07057 sdhA succinate dehydr 98.8 4.3E-08 9.3E-13 103.0 11.4 35 50-87 11-45 (591)
129 PRK06263 sdhA succinate dehydr 98.8 4E-08 8.6E-13 102.6 11.0 34 50-87 6-39 (543)
130 TIGR02061 aprA adenosine phosp 98.7 3.4E-08 7.3E-13 103.3 9.8 33 53-88 1-37 (614)
131 PRK11728 hydroxyglutarate oxid 98.7 1.1E-07 2.3E-12 95.5 12.3 66 248-317 148-213 (393)
132 PRK08641 sdhA succinate dehydr 98.7 1.1E-07 2.3E-12 100.0 12.7 36 50-88 2-37 (589)
133 PRK13977 myosin-cross-reactive 98.7 8.3E-07 1.8E-11 90.5 18.4 90 216-306 191-292 (576)
134 PRK08626 fumarate reductase fl 98.7 7.3E-08 1.6E-12 102.2 10.6 36 49-87 3-38 (657)
135 PRK07843 3-ketosteroid-delta-1 98.7 1.7E-08 3.6E-13 105.5 5.5 108 206-315 159-278 (557)
136 PLN02463 lycopene beta cyclase 98.7 6.8E-08 1.5E-12 97.5 9.6 124 48-175 25-170 (447)
137 PRK06834 hypothetical protein; 98.7 1.2E-07 2.5E-12 97.5 11.4 123 50-175 2-157 (488)
138 TIGR01292 TRX_reduct thioredox 98.7 2.6E-07 5.7E-12 89.0 13.3 99 209-310 2-115 (300)
139 COG2081 Predicted flavoprotein 98.7 4.6E-07 1E-11 86.8 14.0 110 208-319 4-188 (408)
140 PRK10015 oxidoreductase; Provi 98.7 7.8E-08 1.7E-12 97.3 9.2 123 49-174 3-164 (429)
141 TIGR02032 GG-red-SF geranylger 98.7 1.1E-07 2.4E-12 91.3 9.9 120 52-174 1-148 (295)
142 PRK10157 putative oxidoreducta 98.7 8.2E-08 1.8E-12 97.2 9.1 123 49-174 3-164 (428)
143 PRK07251 pyridine nucleotide-d 98.6 9.5E-08 2.1E-12 97.3 9.4 98 50-175 156-254 (438)
144 COG0644 FixC Dehydrogenases (f 98.6 1.5E-07 3.2E-12 94.5 10.6 123 50-175 2-153 (396)
145 COG1053 SdhA Succinate dehydro 98.6 2.9E-07 6.3E-12 95.0 12.9 37 48-87 3-39 (562)
146 PRK07190 hypothetical protein; 98.6 1.3E-07 2.8E-12 97.1 9.9 123 49-174 3-165 (487)
147 TIGR01350 lipoamide_DH dihydro 98.6 9.6E-08 2.1E-12 98.0 8.2 97 51-175 170-270 (461)
148 PRK07333 2-octaprenyl-6-methox 98.6 1.6E-07 3.4E-12 94.8 9.2 124 51-175 1-168 (403)
149 PRK08773 2-octaprenyl-3-methyl 98.6 2.9E-07 6.2E-12 92.5 10.9 125 48-175 3-170 (392)
150 PRK06184 hypothetical protein; 98.6 2E-07 4.3E-12 96.7 9.9 123 50-175 2-169 (502)
151 PRK04176 ribulose-1,5-biphosph 98.6 1.6E-07 3.6E-12 87.8 8.4 121 49-174 23-173 (257)
152 PRK07236 hypothetical protein; 98.6 1.4E-07 3E-12 94.5 8.1 124 49-175 4-155 (386)
153 TIGR00292 thiazole biosynthesi 98.6 1.8E-07 4E-12 87.2 7.7 120 50-174 20-170 (254)
154 PF13454 NAD_binding_9: FAD-NA 98.5 9.5E-07 2.1E-11 76.2 11.4 117 55-172 1-155 (156)
155 TIGR01811 sdhA_Bsu succinate d 98.5 9E-08 1.9E-12 100.7 5.9 31 54-87 1-31 (603)
156 PRK06134 putative FAD-binding 98.5 4.4E-07 9.5E-12 95.4 11.0 102 206-308 160-279 (581)
157 PRK12409 D-amino acid dehydrog 98.5 1.4E-06 3E-11 88.1 14.1 62 250-314 198-264 (410)
158 PRK00711 D-amino acid dehydrog 98.5 4.3E-06 9.3E-11 84.7 17.4 64 250-316 202-265 (416)
159 PF00070 Pyr_redox: Pyridine n 98.5 2.3E-07 4.9E-12 70.2 6.0 78 53-158 1-80 (80)
160 COG1232 HemY Protoporphyrinoge 98.5 7.1E-07 1.5E-11 88.8 10.6 57 247-305 210-266 (444)
161 PRK08020 ubiF 2-octaprenyl-3-m 98.5 4.9E-07 1.1E-11 90.8 9.7 124 49-175 3-170 (391)
162 PRK01747 mnmC bifunctional tRN 98.5 2.1E-06 4.5E-11 92.1 14.9 57 249-308 408-464 (662)
163 TIGR01790 carotene-cycl lycope 98.5 4.1E-07 8.9E-12 91.2 9.0 118 53-174 1-141 (388)
164 PRK09126 hypothetical protein; 98.5 9.2E-07 2E-11 88.8 11.5 123 50-175 2-168 (392)
165 PRK07494 2-octaprenyl-6-methox 98.5 1.1E-06 2.3E-11 88.2 11.8 39 47-88 3-41 (388)
166 TIGR02734 crtI_fam phytoene de 98.5 1.3E-07 2.8E-12 98.2 5.3 57 249-306 219-275 (502)
167 COG3380 Predicted NAD/FAD-depe 98.5 3.8E-07 8.2E-12 82.2 7.4 114 52-171 2-157 (331)
168 PTZ00383 malate:quinone oxidor 98.5 2.5E-06 5.3E-11 87.3 14.3 66 250-318 212-283 (497)
169 PRK08244 hypothetical protein; 98.5 5.6E-07 1.2E-11 93.1 9.8 120 51-174 2-159 (493)
170 TIGR02731 phytoene_desat phyto 98.5 1.9E-06 4.1E-11 88.3 13.6 57 249-305 213-274 (453)
171 TIGR01377 soxA_mon sarcosine o 98.5 5E-06 1.1E-10 83.1 16.0 65 249-317 145-209 (380)
172 TIGR00292 thiazole biosynthesi 98.5 1.5E-05 3.3E-10 74.3 18.1 139 207-345 21-223 (254)
173 PRK04176 ribulose-1,5-biphosph 98.5 9.1E-06 2E-10 76.1 16.4 101 208-308 26-174 (257)
174 PRK07045 putative monooxygenas 98.4 5E-07 1.1E-11 90.6 8.0 122 49-174 3-165 (388)
175 PF03486 HI0933_like: HI0933-l 98.4 1.5E-06 3.3E-11 86.5 11.3 109 209-318 2-186 (409)
176 PRK07233 hypothetical protein; 98.4 8.4E-07 1.8E-11 90.4 9.5 56 249-306 198-253 (434)
177 PRK08849 2-octaprenyl-3-methyl 98.4 8.4E-07 1.8E-11 88.8 9.3 122 51-175 3-168 (384)
178 TIGR03385 CoA_CoA_reduc CoA-di 98.4 9.5E-07 2.1E-11 89.7 9.8 98 51-175 137-234 (427)
179 COG2509 Uncharacterized FAD-de 98.4 7.5E-06 1.6E-10 79.5 15.1 93 226-320 150-246 (486)
180 TIGR01373 soxB sarcosine oxida 98.4 5.8E-06 1.3E-10 83.5 15.4 57 250-307 184-240 (407)
181 PLN02697 lycopene epsilon cycl 98.4 7.3E-07 1.6E-11 91.6 8.6 119 50-174 107-248 (529)
182 PRK06183 mhpA 3-(3-hydroxyphen 98.4 1E-06 2.2E-11 92.1 10.0 37 49-88 8-44 (538)
183 PRK07608 ubiquinone biosynthes 98.4 1.2E-06 2.7E-11 87.8 10.2 37 50-89 4-40 (388)
184 PRK08274 tricarballylate dehyd 98.4 1E-05 2.2E-10 83.1 17.1 64 249-313 131-199 (466)
185 PLN02612 phytoene desaturase 98.4 6.4E-06 1.4E-10 86.3 15.8 57 249-305 308-364 (567)
186 PF13738 Pyr_redox_3: Pyridine 98.4 3E-06 6.4E-11 76.7 11.5 96 211-308 1-141 (203)
187 PRK05714 2-octaprenyl-3-methyl 98.4 1.1E-06 2.5E-11 88.6 9.6 45 131-175 123-169 (405)
188 PRK09754 phenylpropionate diox 98.4 2.5E-06 5.3E-11 85.7 11.9 99 207-309 3-114 (396)
189 PRK05868 hypothetical protein; 98.4 1.1E-06 2.3E-11 87.5 9.3 121 51-175 1-161 (372)
190 PRK08013 oxidoreductase; Provi 98.4 6.2E-07 1.3E-11 90.2 7.5 123 50-175 2-169 (400)
191 PRK08163 salicylate hydroxylas 98.4 6.9E-07 1.5E-11 89.9 7.8 123 50-175 3-167 (396)
192 PRK06126 hypothetical protein; 98.4 1.7E-06 3.6E-11 90.9 10.7 38 48-88 4-41 (545)
193 PRK07364 2-octaprenyl-6-methox 98.4 8.7E-07 1.9E-11 89.7 8.3 38 49-89 16-53 (415)
194 COG0654 UbiH 2-polyprenyl-6-me 98.4 8.8E-07 1.9E-11 88.7 8.0 121 51-174 2-162 (387)
195 PRK06185 hypothetical protein; 98.4 1.7E-06 3.6E-11 87.4 10.1 38 48-88 3-40 (407)
196 PRK08850 2-octaprenyl-6-methox 98.4 1.2E-06 2.5E-11 88.4 8.8 42 134-175 126-169 (405)
197 COG1233 Phytoene dehydrogenase 98.4 6.3E-07 1.4E-11 92.1 6.8 57 248-305 223-279 (487)
198 PRK07588 hypothetical protein; 98.4 2.3E-06 5.1E-11 85.9 10.7 121 52-175 1-159 (391)
199 PF05834 Lycopene_cycl: Lycope 98.4 9.6E-07 2.1E-11 87.8 7.6 119 53-174 1-142 (374)
200 PRK06481 fumarate reductase fl 98.3 4.7E-06 1E-10 86.2 12.9 65 249-314 190-259 (506)
201 PRK06912 acoL dihydrolipoamide 98.3 1.5E-06 3.3E-11 89.0 8.9 97 51-175 170-269 (458)
202 PRK04965 NADH:flavorubredoxin 98.3 1.9E-06 4.1E-11 86.0 9.4 99 50-175 140-240 (377)
203 PTZ00363 rab-GDP dissociation 98.3 2.7E-05 5.8E-10 78.6 17.3 61 248-308 231-291 (443)
204 PRK05732 2-octaprenyl-6-methox 98.3 9.2E-07 2E-11 88.9 6.8 43 133-175 126-170 (395)
205 TIGR03140 AhpF alkyl hydropero 98.3 8.3E-06 1.8E-10 84.7 13.9 101 206-308 211-324 (515)
206 PRK06753 hypothetical protein; 98.3 2.8E-06 6.1E-11 84.7 10.0 120 52-174 1-152 (373)
207 PRK05192 tRNA uridine 5-carbox 98.3 1.1E-06 2.5E-11 90.4 7.2 36 49-87 2-37 (618)
208 PRK08132 FAD-dependent oxidore 98.3 2.5E-06 5.4E-11 89.5 9.9 37 49-88 21-57 (547)
209 PRK06416 dihydrolipoamide dehy 98.3 1.9E-06 4.1E-11 88.5 8.5 97 51-175 172-273 (462)
210 PRK15317 alkyl hydroperoxide r 98.3 1.1E-05 2.5E-10 83.7 14.2 100 207-308 211-323 (517)
211 TIGR01789 lycopene_cycl lycope 98.3 3.5E-06 7.6E-11 83.5 9.6 114 53-174 1-138 (370)
212 COG1635 THI4 Ribulose 1,5-bisp 98.3 1.8E-06 3.9E-11 75.6 6.5 38 50-90 29-66 (262)
213 PRK05976 dihydrolipoamide dehy 98.3 2.7E-06 5.8E-11 87.5 9.1 97 51-175 180-282 (472)
214 PRK13512 coenzyme A disulfide 98.3 2.9E-06 6.2E-11 86.4 9.1 95 51-175 148-242 (438)
215 PRK09564 coenzyme A disulfide 98.3 6.7E-06 1.4E-10 84.0 11.8 101 208-310 1-118 (444)
216 TIGR01984 UbiH 2-polyprenyl-6- 98.3 1.6E-06 3.5E-11 86.8 7.0 119 53-174 1-162 (382)
217 TIGR01988 Ubi-OHases Ubiquinon 98.3 3.3E-06 7.1E-11 84.6 9.2 120 53-175 1-164 (385)
218 TIGR03329 Phn_aa_oxid putative 98.3 1.4E-05 3.1E-10 81.8 14.0 54 249-306 183-236 (460)
219 PRK11259 solA N-methyltryptoph 98.3 3.6E-06 7.7E-11 84.1 9.3 35 50-87 2-36 (376)
220 PRK11445 putative oxidoreducta 98.3 4.5E-06 9.7E-11 82.4 9.8 34 51-88 1-34 (351)
221 PRK06847 hypothetical protein; 98.3 1.6E-05 3.5E-10 79.3 14.0 101 207-309 4-165 (375)
222 PLN02172 flavin-containing mon 98.3 6.2E-05 1.3E-09 76.7 18.2 103 206-310 9-178 (461)
223 PRK14694 putative mercuric red 98.3 4.2E-06 9E-11 86.0 9.8 96 51-176 178-275 (468)
224 TIGR01424 gluta_reduc_2 glutat 98.3 3.2E-06 6.9E-11 86.3 8.9 97 51-175 166-264 (446)
225 PRK11883 protoporphyrinogen ox 98.2 2.2E-05 4.7E-10 80.4 15.0 38 52-90 1-38 (451)
226 PLN00093 geranylgeranyl diphos 98.2 5.7E-06 1.2E-10 84.1 10.4 39 47-88 35-73 (450)
227 TIGR00275 flavoprotein, HI0933 98.2 1.8E-06 3.9E-11 86.6 6.7 46 128-174 113-160 (400)
228 PRK06116 glutathione reductase 98.2 3.6E-06 7.7E-11 86.1 9.0 98 50-175 166-266 (450)
229 TIGR03364 HpnW_proposed FAD de 98.2 4.2E-06 9.2E-11 83.2 9.2 33 52-87 1-33 (365)
230 PRK05249 soluble pyridine nucl 98.2 4.2E-06 9E-11 86.0 9.3 98 50-175 174-273 (461)
231 PF07992 Pyr_redox_2: Pyridine 98.2 2.6E-06 5.6E-11 76.9 6.9 105 209-313 1-128 (201)
232 COG1249 Lpd Pyruvate/2-oxoglut 98.2 4.6E-06 9.9E-11 83.8 9.2 99 49-175 171-273 (454)
233 PRK07846 mycothione reductase; 98.2 4.6E-06 9.9E-11 85.1 9.3 96 51-175 166-263 (451)
234 TIGR03169 Nterm_to_SelD pyridi 98.2 6.7E-06 1.5E-10 81.7 10.2 97 209-310 1-110 (364)
235 TIGR02023 BchP-ChlP geranylger 98.2 4.8E-06 1E-10 83.4 9.3 32 52-86 1-32 (388)
236 PF01134 GIDA: Glucose inhibit 98.2 1.2E-05 2.6E-10 78.6 11.5 95 209-305 1-150 (392)
237 PRK09078 sdhA succinate dehydr 98.2 4.3E-06 9.3E-11 88.1 9.2 36 49-87 10-45 (598)
238 PLN02661 Putative thiazole syn 98.2 4.2E-06 9.2E-11 80.4 8.2 37 50-89 91-128 (357)
239 TIGR00562 proto_IX_ox protopor 98.2 2.4E-05 5.2E-10 80.4 14.6 37 51-90 2-42 (462)
240 COG0665 DadA Glycine/D-amino a 98.2 2.7E-05 5.9E-10 78.0 14.6 57 249-308 156-213 (387)
241 PRK05257 malate:quinone oxidor 98.2 2.2E-05 4.8E-10 80.6 14.0 68 249-318 183-256 (494)
242 TIGR03219 salicylate_mono sali 98.2 1E-05 2.2E-10 81.9 11.4 41 134-174 117-159 (414)
243 PRK06996 hypothetical protein; 98.2 3.8E-06 8.1E-11 84.5 8.2 41 47-87 7-48 (398)
244 PTZ00318 NADH dehydrogenase-li 98.2 1E-05 2.2E-10 81.9 11.3 99 206-309 9-127 (424)
245 PLN02487 zeta-carotene desatur 98.2 8E-06 1.7E-10 84.8 10.5 60 247-306 293-359 (569)
246 PRK07818 dihydrolipoamide dehy 98.2 5.5E-06 1.2E-10 85.1 9.3 97 51-175 172-274 (466)
247 PRK06370 mercuric reductase; V 98.2 5.8E-06 1.3E-10 84.9 9.4 98 51-176 171-273 (463)
248 PF01134 GIDA: Glucose inhibit 98.2 1.5E-06 3.2E-11 84.9 4.6 39 133-172 109-150 (392)
249 TIGR02374 nitri_red_nirB nitri 98.2 7.6E-06 1.6E-10 89.0 10.5 97 210-310 1-111 (785)
250 TIGR01421 gluta_reduc_1 glutat 98.2 5.5E-06 1.2E-10 84.5 8.9 97 51-175 166-266 (450)
251 TIGR01320 mal_quin_oxido malat 98.2 2.6E-05 5.7E-10 79.9 13.8 69 248-318 177-250 (483)
252 PF12831 FAD_oxidored: FAD dep 98.2 8.9E-07 1.9E-11 89.6 3.0 117 53-172 1-148 (428)
253 PRK13339 malate:quinone oxidor 98.2 4.3E-05 9.4E-10 78.0 15.2 67 250-318 185-257 (497)
254 TIGR01989 COQ6 Ubiquinone bios 98.2 4.8E-06 1E-10 84.8 8.3 42 134-175 134-184 (437)
255 TIGR02360 pbenz_hydroxyl 4-hyd 98.2 5E-06 1.1E-10 83.3 8.3 35 51-88 2-36 (390)
256 TIGR02053 MerA mercuric reduct 98.2 5.5E-06 1.2E-10 85.0 8.7 98 51-176 166-268 (463)
257 PRK07845 flavoprotein disulfid 98.2 6.8E-06 1.5E-10 84.3 9.1 98 51-176 177-276 (466)
258 COG1252 Ndh NADH dehydrogenase 98.2 1.1E-05 2.4E-10 79.2 10.0 99 207-310 3-114 (405)
259 PRK08243 4-hydroxybenzoate 3-m 98.2 7.3E-06 1.6E-10 82.3 9.0 35 51-88 2-36 (392)
260 PRK12416 protoporphyrinogen ox 98.1 2.2E-05 4.8E-10 80.7 12.5 50 251-304 228-277 (463)
261 PRK06327 dihydrolipoamide dehy 98.1 7.3E-06 1.6E-10 84.3 8.8 98 50-175 182-285 (475)
262 TIGR02028 ChlP geranylgeranyl 98.1 6E-06 1.3E-10 82.9 7.9 34 52-88 1-34 (398)
263 PRK06617 2-octaprenyl-6-methox 98.1 5.5E-06 1.2E-10 82.6 7.4 34 51-87 1-34 (374)
264 PLN02507 glutathione reductase 98.1 9.2E-06 2E-10 83.9 9.2 98 51-176 203-302 (499)
265 PRK06475 salicylate hydroxylas 98.1 8.4E-06 1.8E-10 82.1 8.7 34 52-88 3-36 (400)
266 PRK14989 nitrite reductase sub 98.1 1.6E-05 3.4E-10 86.7 11.2 100 208-311 4-117 (847)
267 PRK07236 hypothetical protein; 98.1 2.4E-05 5.2E-10 78.4 11.9 102 206-309 5-156 (386)
268 PF01494 FAD_binding_3: FAD bi 98.1 6.6E-07 1.4E-11 88.3 0.6 35 52-89 2-36 (356)
269 PRK06115 dihydrolipoamide dehy 98.1 1.1E-05 2.3E-10 82.8 9.1 98 50-175 173-277 (466)
270 PRK11101 glpA sn-glycerol-3-ph 98.1 7.1E-06 1.5E-10 85.6 7.9 36 49-87 4-39 (546)
271 PTZ00139 Succinate dehydrogena 98.1 1.1E-05 2.3E-10 85.4 9.1 37 49-88 27-63 (617)
272 TIGR03452 mycothione_red mycot 98.1 1.3E-05 2.8E-10 81.8 9.4 96 51-175 169-266 (452)
273 TIGR02732 zeta_caro_desat caro 98.1 1.8E-05 3.9E-10 81.2 10.3 59 248-306 218-283 (474)
274 PRK12770 putative glutamate sy 98.1 1.5E-05 3.3E-10 78.7 9.3 101 205-306 16-129 (352)
275 PF13450 NAD_binding_8: NAD(P) 98.1 4.7E-06 1E-10 60.5 4.2 31 56-89 1-31 (68)
276 TIGR02032 GG-red-SF geranylger 98.1 5.7E-05 1.2E-09 72.4 12.9 97 209-307 2-148 (295)
277 PRK09853 putative selenate red 98.1 2.5E-05 5.5E-10 85.1 11.3 91 206-308 538-636 (1019)
278 PTZ00052 thioredoxin reductase 98.1 1.6E-05 3.5E-10 82.1 9.5 96 51-175 182-279 (499)
279 COG0446 HcaD Uncharacterized N 98.1 1.3E-05 2.8E-10 81.0 8.5 98 51-175 136-238 (415)
280 PRK08010 pyridine nucleotide-d 98.0 1.6E-05 3.4E-10 81.2 9.1 98 50-176 157-256 (441)
281 TIGR01423 trypano_reduc trypan 98.0 1.4E-05 3E-10 82.1 8.7 101 50-175 186-289 (486)
282 PF00890 FAD_binding_2: FAD bi 98.0 4.6E-06 9.9E-11 84.5 5.1 33 53-88 1-33 (417)
283 PRK07121 hypothetical protein; 98.0 0.00014 3.1E-09 75.2 16.0 59 248-306 176-238 (492)
284 PRK13748 putative mercuric red 98.0 1.9E-05 4E-10 83.3 9.5 96 51-176 270-367 (561)
285 PRK07803 sdhA succinate dehydr 98.0 1.6E-05 3.4E-10 84.3 8.7 36 50-88 7-42 (626)
286 PRK06834 hypothetical protein; 98.0 8.8E-05 1.9E-09 76.4 13.8 107 208-318 4-165 (488)
287 PRK11749 dihydropyrimidine deh 98.0 2E-05 4.4E-10 80.7 9.1 90 206-306 139-236 (457)
288 PLN02463 lycopene beta cyclase 98.0 7E-05 1.5E-09 75.9 12.7 98 208-308 29-170 (447)
289 TIGR01438 TGR thioredoxin and 98.0 2.3E-05 5E-10 80.6 9.2 96 51-175 180-280 (484)
290 PRK14727 putative mercuric red 98.0 2.4E-05 5.2E-10 80.6 9.2 96 51-176 188-285 (479)
291 TIGR01813 flavo_cyto_c flavocy 98.0 3E-05 6.4E-10 79.1 9.7 33 53-88 1-34 (439)
292 PRK07045 putative monooxygenas 98.0 0.00011 2.3E-09 73.7 13.6 101 208-308 6-166 (388)
293 PRK07538 hypothetical protein; 98.0 2.1E-05 4.6E-10 79.5 8.6 34 52-88 1-34 (413)
294 PRK12779 putative bifunctional 98.0 3E-05 6.5E-10 85.4 9.9 93 206-308 305-406 (944)
295 PRK08773 2-octaprenyl-3-methyl 98.0 0.00011 2.4E-09 73.8 13.3 108 207-318 6-178 (392)
296 PRK06292 dihydrolipoamide dehy 98.0 2.5E-05 5.3E-10 80.3 8.6 98 50-176 168-270 (460)
297 PRK08958 sdhA succinate dehydr 98.0 3.4E-05 7.4E-10 81.2 9.8 35 50-87 6-40 (588)
298 PTZ00058 glutathione reductase 98.0 2.9E-05 6.4E-10 80.8 9.1 97 51-175 237-337 (561)
299 COG2907 Predicted NAD/FAD-bind 98.0 0.00015 3.2E-09 68.2 12.6 59 247-307 215-273 (447)
300 KOG2820 FAD-dependent oxidored 97.9 2.8E-05 6E-10 72.6 7.6 50 127-176 160-214 (399)
301 PRK10262 thioredoxin reductase 97.9 0.00019 4.1E-09 70.0 13.5 100 206-309 5-119 (321)
302 COG1635 THI4 Ribulose 1,5-bisp 97.9 0.0002 4.3E-09 63.1 11.9 137 208-345 31-229 (262)
303 PRK08163 salicylate hydroxylas 97.9 0.00016 3.4E-09 72.7 13.2 100 207-308 4-167 (396)
304 PRK10157 putative oxidoreducta 97.9 0.00022 4.8E-09 72.3 14.1 107 208-318 6-173 (428)
305 PRK07190 hypothetical protein; 97.9 0.00035 7.6E-09 72.0 15.6 107 208-318 6-174 (487)
306 TIGR01316 gltA glutamate synth 97.9 4.2E-05 9.1E-10 78.0 8.8 92 206-308 132-232 (449)
307 PRK08294 phenol 2-monooxygenas 97.9 6E-05 1.3E-09 80.0 10.3 37 49-88 30-67 (634)
308 PF01946 Thi4: Thi4 family; PD 97.9 1E-05 2.3E-10 71.4 3.7 37 50-89 16-52 (230)
309 PRK06467 dihydrolipoamide dehy 97.9 3.8E-05 8.2E-10 78.9 8.4 96 51-175 174-275 (471)
310 PRK08244 hypothetical protein; 97.9 0.00016 3.6E-09 74.9 13.2 101 208-308 3-160 (493)
311 PF04820 Trp_halogenase: Trypt 97.9 0.00017 3.6E-09 73.5 12.9 57 251-308 156-212 (454)
312 PRK07588 hypothetical protein; 97.9 0.00017 3.6E-09 72.5 12.9 98 209-309 2-160 (391)
313 TIGR00136 gidA glucose-inhibit 97.9 4.1E-05 9E-10 79.0 8.4 34 52-88 1-34 (617)
314 PLN02464 glycerol-3-phosphate 97.9 4.9E-05 1.1E-09 80.5 9.2 65 248-313 231-301 (627)
315 KOG1336 Monodehydroascorbate/f 97.9 3.5E-05 7.7E-10 75.5 7.4 100 50-176 212-315 (478)
316 PRK07333 2-octaprenyl-6-methox 97.9 0.00018 3.9E-09 72.5 12.9 106 209-318 3-176 (403)
317 COG0654 UbiH 2-polyprenyl-6-me 97.8 0.00024 5.1E-09 71.2 13.2 98 208-307 3-162 (387)
318 PRK05868 hypothetical protein; 97.8 0.00021 4.6E-09 71.1 12.7 100 208-309 2-162 (372)
319 PRK12843 putative FAD-binding 97.8 0.00026 5.6E-09 74.6 13.8 66 248-314 220-290 (578)
320 PRK12831 putative oxidoreducta 97.8 5.9E-05 1.3E-09 77.2 8.8 93 206-308 139-242 (464)
321 TIGR03143 AhpF_homolog putativ 97.8 0.00024 5.1E-09 74.5 13.3 97 208-309 5-116 (555)
322 PF00743 FMO-like: Flavin-bind 97.8 0.00033 7.2E-09 72.5 14.0 137 207-343 1-192 (531)
323 KOG0029 Amine oxidase [Seconda 97.8 2.3E-05 4.9E-10 80.0 5.4 40 48-90 12-51 (501)
324 TIGR01318 gltD_gamma_fam gluta 97.8 7.1E-05 1.5E-09 76.7 9.0 92 206-308 140-239 (467)
325 COG0492 TrxB Thioredoxin reduc 97.8 0.00034 7.4E-09 66.9 12.9 98 208-309 4-117 (305)
326 PRK05714 2-octaprenyl-3-methyl 97.8 0.00027 5.8E-09 71.3 13.0 98 209-308 4-169 (405)
327 PLN02852 ferredoxin-NADP+ redu 97.8 7.3E-05 1.6E-09 76.1 8.8 92 206-308 25-127 (491)
328 KOG2415 Electron transfer flav 97.8 0.00025 5.4E-09 68.1 11.6 60 250-309 184-258 (621)
329 PRK01438 murD UDP-N-acetylmura 97.8 0.00012 2.6E-09 75.6 10.4 82 206-313 15-96 (480)
330 PRK06184 hypothetical protein; 97.8 0.00032 7E-09 72.8 13.6 98 208-307 4-168 (502)
331 PF04820 Trp_halogenase: Trypt 97.8 3E-05 6.4E-10 79.0 5.7 35 53-87 1-35 (454)
332 PLN02546 glutathione reductase 97.8 7.9E-05 1.7E-09 77.6 8.6 99 50-176 251-352 (558)
333 COG0493 GltD NADPH-dependent g 97.8 7.3E-05 1.6E-09 75.4 8.0 122 157-307 90-220 (457)
334 PRK09126 hypothetical protein; 97.8 0.00035 7.6E-09 70.1 12.9 100 208-309 4-169 (392)
335 PTZ00153 lipoamide dehydrogena 97.8 7.3E-05 1.6E-09 79.0 8.2 97 51-175 312-428 (659)
336 TIGR01984 UbiH 2-polyprenyl-6- 97.7 0.00038 8.2E-09 69.6 12.9 97 209-307 1-162 (382)
337 TIGR01317 GOGAT_sm_gam glutama 97.7 9.6E-05 2.1E-09 76.1 8.7 90 206-306 142-239 (485)
338 PLN02697 lycopene epsilon cycl 97.7 0.00037 8E-09 71.9 12.8 98 208-307 109-248 (529)
339 PRK05192 tRNA uridine 5-carbox 97.7 0.0003 6.5E-09 72.9 12.1 95 209-305 6-155 (618)
340 TIGR01988 Ubi-OHases Ubiquinon 97.7 0.00046 9.9E-09 69.0 13.1 98 209-308 1-164 (385)
341 PTZ00188 adrenodoxin reductase 97.7 0.00027 5.8E-09 71.1 10.9 129 206-348 38-176 (506)
342 PRK08013 oxidoreductase; Provi 97.7 0.00046 9.9E-09 69.5 12.8 99 208-308 4-169 (400)
343 PRK07608 ubiquinone biosynthes 97.7 0.00051 1.1E-08 68.8 13.1 105 208-317 6-175 (388)
344 PRK07364 2-octaprenyl-6-methox 97.7 0.00043 9.4E-09 70.1 12.6 100 208-309 19-183 (415)
345 PRK07208 hypothetical protein; 97.7 4.8E-05 1E-09 78.6 5.6 57 249-305 218-278 (479)
346 PF01494 FAD_binding_3: FAD bi 97.7 0.00039 8.5E-09 68.5 11.9 100 209-308 3-173 (356)
347 PRK12778 putative bifunctional 97.7 0.00013 2.8E-09 79.4 9.1 93 206-308 430-531 (752)
348 KOG2665 Predicted FAD-dependen 97.7 0.00023 5E-09 65.9 9.0 69 251-320 198-269 (453)
349 TIGR03315 Se_ygfK putative sel 97.7 0.00019 4.1E-09 78.8 9.8 90 207-308 537-634 (1012)
350 PRK06753 hypothetical protein; 97.7 0.00044 9.6E-09 68.9 11.9 98 209-308 2-153 (373)
351 COG0578 GlpA Glycerol-3-phosph 97.7 0.00076 1.6E-08 68.5 13.4 65 248-315 163-232 (532)
352 PRK08020 ubiF 2-octaprenyl-3-m 97.6 0.00069 1.5E-08 68.0 13.0 99 208-308 6-170 (391)
353 PLN02661 Putative thiazole syn 97.6 0.0013 2.9E-08 63.5 14.1 99 208-307 93-244 (357)
354 PRK08849 2-octaprenyl-3-methyl 97.6 0.00072 1.6E-08 67.7 12.9 100 208-309 4-169 (384)
355 TIGR00136 gidA glucose-inhibit 97.6 0.00065 1.4E-08 70.3 12.6 98 209-307 2-154 (617)
356 TIGR01790 carotene-cycl lycope 97.6 0.00065 1.4E-08 68.1 12.6 97 209-307 1-141 (388)
357 COG0644 FixC Dehydrogenases (f 97.6 0.00078 1.7E-08 67.7 13.1 107 209-318 5-161 (396)
358 COG0445 GidA Flavin-dependent 97.6 5.4E-05 1.2E-09 75.4 4.4 35 50-87 3-37 (621)
359 PRK08850 2-octaprenyl-6-methox 97.6 0.00073 1.6E-08 68.2 12.6 107 208-318 5-177 (405)
360 PLN02529 lysine-specific histo 97.6 7.5E-05 1.6E-09 79.5 5.5 39 49-90 158-196 (738)
361 PF12831 FAD_oxidored: FAD dep 97.6 5.2E-05 1.1E-09 76.8 4.2 106 210-319 2-159 (428)
362 PRK12809 putative oxidoreducta 97.6 0.0002 4.2E-09 76.4 8.6 92 206-308 309-408 (639)
363 PRK06183 mhpA 3-(3-hydroxyphen 97.6 0.00081 1.8E-08 70.5 13.0 100 207-308 10-175 (538)
364 PRK12810 gltD glutamate syntha 97.6 0.00023 5E-09 73.2 8.6 91 206-307 142-240 (471)
365 PRK08132 FAD-dependent oxidore 97.6 0.00092 2E-08 70.2 13.3 102 207-308 23-186 (547)
366 KOG1399 Flavin-containing mono 97.6 0.0018 3.8E-08 65.2 14.5 135 206-341 5-193 (448)
367 PRK06475 salicylate hydroxylas 97.6 0.0011 2.3E-08 66.8 13.1 99 208-308 3-168 (400)
368 PRK12775 putative trifunctiona 97.6 0.00025 5.4E-09 79.0 9.2 92 207-308 430-531 (1006)
369 PRK01438 murD UDP-N-acetylmura 97.6 0.00038 8.2E-09 71.9 10.1 77 50-175 15-91 (480)
370 COG2072 TrkA Predicted flavopr 97.6 0.0049 1.1E-07 62.6 17.8 100 206-305 7-142 (443)
371 PRK06617 2-octaprenyl-6-methox 97.5 0.0011 2.3E-08 66.2 12.5 98 209-309 3-162 (374)
372 PRK09897 hypothetical protein; 97.5 0.0015 3.3E-08 67.5 13.8 99 208-308 2-167 (534)
373 PRK12814 putative NADPH-depend 97.5 0.00027 5.8E-09 75.5 8.6 92 206-308 192-291 (652)
374 PTZ00306 NADH-dependent fumara 97.5 0.0038 8.3E-08 71.1 18.2 37 50-89 408-444 (1167)
375 TIGR01789 lycopene_cycl lycope 97.5 0.00058 1.3E-08 67.8 10.4 93 210-308 2-139 (370)
376 PRK10015 oxidoreductase; Provi 97.5 0.0013 2.8E-08 66.7 13.0 98 208-307 6-164 (429)
377 PRK05732 2-octaprenyl-6-methox 97.5 0.0013 2.8E-08 66.0 13.0 106 208-317 4-177 (395)
378 PRK07494 2-octaprenyl-6-methox 97.5 0.0012 2.7E-08 66.1 12.6 106 208-318 8-176 (388)
379 PRK06185 hypothetical protein; 97.5 0.0016 3.4E-08 65.8 13.2 109 207-318 6-178 (407)
380 PLN02785 Protein HOTHEAD 97.5 0.0024 5.2E-08 67.1 14.7 62 256-317 227-300 (587)
381 COG3349 Uncharacterized conser 97.5 0.00013 2.7E-09 72.8 4.9 37 52-91 1-37 (485)
382 PLN02568 polyamine oxidase 97.5 0.00014 3.1E-09 75.4 5.6 43 48-90 2-46 (539)
383 PRK12769 putative oxidoreducta 97.5 0.00036 7.9E-09 74.7 8.6 92 206-308 326-425 (654)
384 PLN02268 probable polyamine ox 97.4 0.00014 3.1E-09 74.0 5.0 37 52-91 1-37 (435)
385 TIGR02485 CobZ_N-term precorri 97.4 0.00032 6.9E-09 71.4 7.5 30 56-88 1-30 (432)
386 TIGR03219 salicylate_mono sali 97.4 0.0011 2.3E-08 67.2 11.1 98 209-308 2-160 (414)
387 PRK05335 tRNA (uracil-5-)-meth 97.4 0.00017 3.7E-09 71.4 4.9 35 51-88 2-36 (436)
388 TIGR00275 flavoprotein, HI0933 97.4 0.0013 2.8E-08 66.1 11.3 94 211-307 1-160 (400)
389 PLN02576 protoporphyrinogen ox 97.4 0.00021 4.5E-09 74.2 5.5 39 49-90 10-49 (496)
390 PF01946 Thi4: Thi4 family; PD 97.4 0.0034 7.4E-08 55.8 12.1 103 207-309 17-167 (230)
391 KOG0685 Flavin-containing amin 97.4 0.00024 5.1E-09 69.8 5.2 40 49-90 19-58 (498)
392 TIGR01813 flavo_cyto_c flavocy 97.4 0.0025 5.4E-08 65.1 13.1 64 251-314 132-200 (439)
393 PRK13369 glycerol-3-phosphate 97.4 0.00021 4.6E-09 74.0 5.3 59 248-308 154-216 (502)
394 TIGR01372 soxA sarcosine oxida 97.4 0.0023 4.9E-08 71.7 13.5 101 207-309 163-288 (985)
395 PRK12266 glpD glycerol-3-phosp 97.4 0.00023 5E-09 73.7 5.3 58 249-308 155-217 (508)
396 PLN02985 squalene monooxygenas 97.3 0.00026 5.6E-09 73.3 5.6 38 48-88 40-77 (514)
397 PF13454 NAD_binding_9: FAD-NA 97.3 0.0029 6.2E-08 54.5 11.2 41 263-305 114-155 (156)
398 PRK08243 4-hydroxybenzoate 3-m 97.3 0.0034 7.3E-08 63.0 13.3 101 208-309 3-165 (392)
399 PRK06126 hypothetical protein; 97.3 0.0027 5.9E-08 66.7 13.1 100 207-308 7-189 (545)
400 PLN02328 lysine-specific histo 97.3 0.00031 6.7E-09 75.3 6.0 39 49-90 236-274 (808)
401 PLN02927 antheraxanthin epoxid 97.3 0.00024 5.1E-09 74.8 4.9 36 49-87 79-114 (668)
402 PF05834 Lycopene_cycl: Lycope 97.3 0.0027 5.8E-08 63.3 12.0 96 210-308 2-143 (374)
403 TIGR00031 UDP-GALP_mutase UDP- 97.3 0.0003 6.6E-09 69.3 5.2 36 52-90 2-37 (377)
404 KOG0404 Thioredoxin reductase 97.3 0.002 4.3E-08 56.9 9.5 99 207-309 8-126 (322)
405 PRK06996 hypothetical protein; 97.3 0.0027 5.7E-08 63.9 12.1 99 206-306 10-173 (398)
406 PRK11259 solA N-methyltryptoph 97.3 0.0037 8.1E-08 62.3 13.1 52 258-313 158-209 (376)
407 TIGR00137 gid_trmFO tRNA:m(5)U 97.3 0.0004 8.6E-09 69.2 5.7 34 209-242 2-35 (433)
408 TIGR01989 COQ6 Ubiquinone bios 97.3 0.004 8.6E-08 63.5 13.2 101 209-309 2-185 (437)
409 PRK13984 putative oxidoreducta 97.3 0.00085 1.9E-08 71.3 8.6 91 206-307 282-380 (604)
410 TIGR02733 desat_CrtD C-3',4' d 97.3 0.00032 7E-09 72.7 5.2 57 248-305 231-292 (492)
411 PRK12771 putative glutamate sy 97.3 0.00097 2.1E-08 70.2 8.8 92 205-308 135-235 (564)
412 KOG4254 Phytoene desaturase [C 97.2 0.00096 2.1E-08 64.9 7.5 55 249-304 264-318 (561)
413 PTZ00367 squalene epoxidase; P 97.2 0.00035 7.5E-09 72.9 4.9 36 49-87 31-66 (567)
414 PRK07538 hypothetical protein; 97.2 0.004 8.6E-08 63.0 12.4 98 209-308 2-166 (413)
415 PF06039 Mqo: Malate:quinone o 97.2 0.0015 3.3E-08 64.4 8.7 85 250-335 182-274 (488)
416 COG0445 GidA Flavin-dependent 97.2 0.0012 2.6E-08 66.1 7.6 97 208-305 5-156 (621)
417 PF00890 FAD_binding_2: FAD bi 97.2 0.0041 9E-08 63.0 12.0 58 250-308 142-204 (417)
418 KOG1335 Dihydrolipoamide dehyd 97.2 0.00061 1.3E-08 64.9 5.3 99 49-175 209-315 (506)
419 KOG2844 Dimethylglycine dehydr 97.2 0.0023 4.9E-08 65.4 9.6 71 232-307 173-243 (856)
420 KOG2853 Possible oxidoreductas 97.2 0.0096 2.1E-07 56.1 12.9 53 50-102 85-138 (509)
421 TIGR02360 pbenz_hydroxyl 4-hyd 97.1 0.0056 1.2E-07 61.4 12.5 100 208-308 3-164 (390)
422 PF14721 AIF_C: Apoptosis-indu 97.1 0.0017 3.8E-08 51.5 6.8 33 422-455 99-131 (133)
423 PRK11101 glpA sn-glycerol-3-ph 97.1 0.0054 1.2E-07 64.2 12.6 54 258-313 158-216 (546)
424 KOG2404 Fumarate reductase, fl 97.1 0.00069 1.5E-08 63.0 5.2 32 53-87 11-42 (477)
425 KOG0399 Glutamate synthase [Am 97.1 0.0015 3.2E-08 70.1 7.8 94 206-310 1784-1885(2142)
426 COG1231 Monoamine oxidase [Ami 97.1 0.00064 1.4E-08 66.7 4.9 39 49-90 5-43 (450)
427 TIGR02028 ChlP geranylgeranyl 97.1 0.0084 1.8E-07 60.3 13.2 99 209-308 2-161 (398)
428 KOG2820 FAD-dependent oxidored 97.1 0.0082 1.8E-07 56.6 11.6 62 251-313 155-217 (399)
429 TIGR02023 BchP-ChlP geranylger 97.1 0.0077 1.7E-07 60.3 12.6 104 209-317 2-163 (388)
430 TIGR02730 carot_isom carotene 97.1 0.00068 1.5E-08 70.2 5.1 57 249-306 229-285 (493)
431 PRK07804 L-aspartate oxidase; 97.1 0.0071 1.5E-07 63.3 12.6 55 251-305 146-208 (541)
432 PRK11445 putative oxidoreducta 97.0 0.011 2.4E-07 58.4 13.2 96 209-308 3-158 (351)
433 PRK06567 putative bifunctional 97.0 0.0016 3.4E-08 70.7 7.6 35 205-239 381-415 (1028)
434 KOG1276 Protoporphyrinogen oxi 97.0 0.00093 2E-08 64.7 5.1 40 50-90 10-49 (491)
435 TIGR03364 HpnW_proposed FAD de 97.0 0.0074 1.6E-07 59.9 11.9 47 255-308 151-198 (365)
436 KOG2614 Kynurenine 3-monooxyge 97.0 0.00085 1.8E-08 64.9 4.8 35 51-88 2-36 (420)
437 PLN02676 polyamine oxidase 97.0 0.0011 2.3E-08 68.3 5.7 41 48-90 23-63 (487)
438 PRK08401 L-aspartate oxidase; 97.0 0.0093 2E-07 61.2 12.5 96 208-306 2-174 (466)
439 COG3573 Predicted oxidoreducta 96.9 0.0029 6.4E-08 59.2 7.6 35 50-87 4-38 (552)
440 TIGR02485 CobZ_N-term precorri 96.9 0.0099 2.2E-07 60.5 12.3 64 251-314 125-191 (432)
441 COG1251 NirB NAD(P)H-nitrite r 96.9 0.0049 1.1E-07 63.9 9.7 103 207-313 3-119 (793)
442 PRK12834 putative FAD-binding 96.9 0.0011 2.3E-08 69.7 5.0 35 50-87 3-37 (549)
443 PF06100 Strep_67kDa_ant: Stre 96.9 0.014 3E-07 58.5 12.3 87 217-307 173-274 (500)
444 TIGR00137 gid_trmFO tRNA:m(5)U 96.9 0.0011 2.4E-08 66.1 4.7 34 52-88 1-34 (433)
445 PRK12837 3-ketosteroid-delta-1 96.8 0.0012 2.7E-08 68.5 4.8 36 50-89 6-41 (513)
446 TIGR01812 sdhA_frdA_Gneg succi 96.8 0.015 3.2E-07 61.4 12.9 51 255-306 135-190 (566)
447 PRK08255 salicylyl-CoA 5-hydro 96.8 0.0013 2.8E-08 71.7 4.7 36 52-88 1-36 (765)
448 KOG2495 NADH-dehydrogenase (ub 96.8 0.0082 1.8E-07 58.4 9.5 103 206-310 54-173 (491)
449 PF00732 GMC_oxred_N: GMC oxid 96.8 0.001 2.3E-08 63.9 3.6 67 251-317 195-268 (296)
450 PLN00093 geranylgeranyl diphos 96.8 0.019 4E-07 58.6 12.8 106 208-317 40-207 (450)
451 PRK09078 sdhA succinate dehydr 96.8 0.018 4E-07 61.0 13.0 54 253-306 153-211 (598)
452 PRK08275 putative oxidoreducta 96.8 0.021 4.5E-07 60.0 13.4 56 252-307 140-200 (554)
453 COG0562 Glf UDP-galactopyranos 96.8 0.002 4.4E-08 60.1 5.0 38 51-91 1-38 (374)
454 TIGR01811 sdhA_Bsu succinate d 96.8 0.017 3.6E-07 61.3 12.6 44 262-305 146-194 (603)
455 PTZ00139 Succinate dehydrogena 96.7 0.021 4.6E-07 60.6 13.1 53 253-305 170-227 (617)
456 KOG2311 NAD/FAD-utilizing prot 96.7 0.0062 1.3E-07 59.9 7.9 32 208-239 29-60 (679)
457 PRK12835 3-ketosteroid-delta-1 96.7 0.002 4.4E-08 67.9 5.0 67 248-314 212-283 (584)
458 KOG2311 NAD/FAD-utilizing prot 96.6 0.0028 6E-08 62.2 5.1 36 49-87 26-61 (679)
459 PRK02106 choline dehydrogenase 96.6 0.0025 5.4E-08 67.1 5.2 65 254-319 206-274 (560)
460 COG3380 Predicted NAD/FAD-depe 96.6 0.0088 1.9E-07 54.7 7.8 100 209-312 3-165 (331)
461 PRK12844 3-ketosteroid-delta-1 96.6 0.0025 5.3E-08 66.9 5.1 65 248-313 207-276 (557)
462 PRK12839 hypothetical protein; 96.6 0.0026 5.7E-08 66.8 5.2 66 248-313 213-283 (572)
463 PRK08958 sdhA succinate dehydr 96.6 0.03 6.5E-07 59.2 13.1 54 253-306 147-205 (588)
464 PRK06452 sdhA succinate dehydr 96.6 0.024 5.1E-07 59.7 12.1 52 253-305 140-196 (566)
465 PRK07573 sdhA succinate dehydr 96.6 0.028 6E-07 60.0 12.6 49 256-305 177-230 (640)
466 PRK06175 L-aspartate oxidase; 96.5 0.028 6.1E-07 57.1 12.2 55 251-306 130-188 (433)
467 TIGR00551 nadB L-aspartate oxi 96.5 0.024 5.3E-07 58.6 11.7 57 251-308 130-190 (488)
468 PRK06263 sdhA succinate dehydr 96.5 0.033 7.2E-07 58.4 12.7 54 253-306 138-196 (543)
469 PRK13369 glycerol-3-phosphate 96.5 0.027 5.8E-07 58.5 11.9 33 208-240 7-39 (502)
470 PRK08294 phenol 2-monooxygenas 96.5 0.036 7.7E-07 59.2 13.0 102 207-308 32-211 (634)
471 PLN02927 antheraxanthin epoxid 96.5 0.032 6.9E-07 59.1 12.1 36 205-240 79-114 (668)
472 PRK07057 sdhA succinate dehydr 96.4 0.04 8.6E-07 58.3 12.9 52 256-307 155-211 (591)
473 COG4529 Uncharacterized protei 96.4 0.033 7.1E-07 55.5 11.3 101 208-309 2-166 (474)
474 PRK06854 adenylylsulfate reduc 96.4 0.045 9.7E-07 58.1 13.3 96 209-305 13-193 (608)
475 PLN02985 squalene monooxygenas 96.4 0.04 8.6E-07 57.2 12.6 99 208-308 44-209 (514)
476 PLN00128 Succinate dehydrogena 96.4 0.04 8.8E-07 58.6 12.5 54 253-306 191-249 (635)
477 PLN03000 amine oxidase 96.4 0.005 1.1E-07 66.4 5.5 39 49-90 182-220 (881)
478 PRK08205 sdhA succinate dehydr 96.3 0.06 1.3E-06 57.0 13.6 57 251-307 142-206 (583)
479 PRK05945 sdhA succinate dehydr 96.3 0.048 1E-06 57.6 12.6 55 252-307 138-197 (575)
480 COG3634 AhpF Alkyl hydroperoxi 96.3 0.012 2.7E-07 55.5 7.0 100 207-306 211-324 (520)
481 PLN02976 amine oxidase 96.3 0.0062 1.3E-07 68.4 5.7 38 49-89 691-728 (1713)
482 PRK07803 sdhA succinate dehydr 96.2 0.062 1.3E-06 57.3 12.9 31 209-239 10-40 (626)
483 PRK12845 3-ketosteroid-delta-1 96.2 0.0062 1.3E-07 63.9 5.2 66 248-314 216-286 (564)
484 KOG2852 Possible oxidoreductas 96.2 0.016 3.5E-07 53.4 6.9 34 206-239 9-48 (380)
485 KOG1346 Programmed cell death 96.2 0.0072 1.6E-07 58.3 4.9 103 49-175 345-450 (659)
486 KOG2404 Fumarate reductase, fl 96.1 0.045 9.7E-07 51.3 9.7 52 263-315 159-216 (477)
487 COG1148 HdrA Heterodisulfide r 96.1 0.015 3.3E-07 57.4 7.0 70 207-276 124-205 (622)
488 PRK12266 glpD glycerol-3-phosp 96.1 0.071 1.5E-06 55.4 12.5 33 208-240 7-39 (508)
489 PF13450 NAD_binding_8: NAD(P) 96.1 0.011 2.4E-07 42.7 4.6 33 212-244 1-33 (68)
490 KOG1298 Squalene monooxygenase 96.1 0.0075 1.6E-07 57.8 4.7 38 48-88 42-79 (509)
491 TIGR02462 pyranose_ox pyranose 96.1 0.0068 1.5E-07 62.7 4.5 62 257-318 222-290 (544)
492 PRK06069 sdhA succinate dehydr 96.0 0.077 1.7E-06 56.1 12.5 51 255-306 143-199 (577)
493 PRK08641 sdhA succinate dehydr 96.0 0.07 1.5E-06 56.5 12.2 31 209-239 5-35 (589)
494 PRK08255 salicylyl-CoA 5-hydro 96.0 0.018 4E-07 62.8 8.0 33 209-241 2-36 (765)
495 PRK12835 3-ketosteroid-delta-1 96.0 0.067 1.5E-06 56.5 11.8 34 208-241 12-45 (584)
496 PRK14106 murD UDP-N-acetylmura 96.0 0.032 7E-07 57.1 9.0 82 206-312 4-85 (450)
497 PRK07395 L-aspartate oxidase; 96.0 0.046 1E-06 57.3 10.3 53 253-305 138-195 (553)
498 KOG2960 Protein involved in th 95.9 0.002 4.3E-08 56.4 -0.3 37 51-88 76-112 (328)
499 PF02852 Pyr_redox_dim: Pyridi 95.8 0.019 4.1E-07 46.1 5.4 58 422-479 48-110 (110)
500 PRK08071 L-aspartate oxidase; 95.8 0.068 1.5E-06 55.6 10.8 45 262-307 142-190 (510)
No 1
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=7.7e-58 Score=457.27 Aligned_cols=391 Identities=27% Similarity=0.428 Sum_probs=335.3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
.+++|||||||+||++||..|++.++ +.+|+||+++++.+|.+|++++.++........ .....++
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~-~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~-------------~~~~~~~ 67 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGF-TGELHLFSDERHLPYERPPLSKSMLLEDSPQLQ-------------QVLPANW 67 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCC-CCCEEEeCCCCCCCCCCCCCCHHHHCCCCcccc-------------ccCCHHH
Confidence 45689999999999999999999986 789999999999999999998766543222111 1234678
Q ss_pred HHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCe
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK 209 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~ 209 (488)
+.+.+++++.++.|..+|++++.+++.+|+++.||+||||||+.++.+| .++...++++++++..++..+.+.+..+++
T Consensus 68 ~~~~~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p-~~~~~~~~v~~~~~~~da~~l~~~~~~~~~ 146 (396)
T PRK09754 68 WQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLP-LLDALGERCFTLRHAGDAARLREVLQPERS 146 (396)
T ss_pred HHHCCCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCC-CCCcCCCCEEecCCHHHHHHHHHHhhcCCe
Confidence 8899999999888999999999999999999999999999999986543 344456788999999999888887788899
Q ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC
Q 011351 210 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 289 (488)
Q Consensus 210 vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~ 289 (488)
++|||+|++|+|+|..|.++|.+|+++++.++++++.+++.+.+.+.+.+++.||++++++.+++++. ++. ..+.+.
T Consensus 147 vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~-~~v~l~ 223 (396)
T PRK09754 147 VVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD--GEK-VELTLQ 223 (396)
T ss_pred EEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCE-EEEEEC
Confidence 99999999999999999999999999999999998778889999999999999999999999999974 233 357788
Q ss_pred CCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHH
Q 011351 290 DGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 369 (488)
Q Consensus 290 ~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~ 369 (488)
+|+++++|.||+++|.+|++.+++++++..+ ++|.||++++|+.|||||+|||+..+.. .|...+.++|..|..||+.
T Consensus 224 ~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~-~gi~vd~~~~ts~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg~~ 301 (396)
T PRK09754 224 SGETLQADVVIYGIGISANDQLAREANLDTA-NGIVIDEACRTCDPAIFAGGDVAITRLD-NGALHRCESWENANNQAQI 301 (396)
T ss_pred CCCEEECCEEEECCCCChhhHHHHhcCCCcC-CCEEECCCCccCCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHHHH
Confidence 9999999999999999999888888898775 6799999999999999999999987766 6766678899999999999
Q ss_pred HHHHHhcCCCCCCCCCCceeEeccccCCCCcceeeEEeeCCCC-cEEEEccCC-CcEEEEEEECCEEEEEEeecCChHHh
Q 011351 370 CIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEF 447 (488)
Q Consensus 370 ~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~ 447 (488)
+|+||++. ..++..+||||+++|+.. ++++|.... +.+..++.+ .++..+|+++|+|+|+++ .+++..+
T Consensus 302 aa~ni~g~-~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~~ 372 (396)
T PRK09754 302 AAAAMLGL-PLPLLPPPWFWSDQYSDN-------LQFIGDMRGDDWLCRGNPETQKAIWFNLQNGVLIGAVT-LNQGREI 372 (396)
T ss_pred HHHHhcCC-CCCCCCCCceEEEeCCcc-------EEEeeCCCCCEEEEecCCCCceEEEEEeeCCEEEEEEE-ECCHHHH
Confidence 99999974 467889999999999865 888997544 344556544 457778889999999986 7889999
Q ss_pred hHHHHHHhcCCCCChhhhcCCC
Q 011351 448 QLLPTLARSQPFVDKAKLQQAS 469 (488)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~ 469 (488)
..++++++.+..+++..+.++.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~ 394 (396)
T PRK09754 373 RPIRKWIQSGKTFDAKLLIDEN 394 (396)
T ss_pred HHHHHHHHCCCCCCHHHhcCcc
Confidence 9999999999999988887763
No 2
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=100.00 E-value=4.3e-55 Score=416.44 Aligned_cols=401 Identities=45% Similarity=0.762 Sum_probs=362.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
.+.++|||+|++|..|+.++++.++ ..+++++..+.++||.||.+++...... +....+..+||
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~-~~ri~l~~~~~~~pydr~~Ls~~~~~~~---------------~~~a~r~~e~Y 137 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGF-TERIALVKREYLLPYDRARLSKFLLTVG---------------EGLAKRTPEFY 137 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCC-CcceEEEeccccCcccchhcccceeecc---------------ccccccChhhH
Confidence 5789999999999999999999997 7899999999999999998887443322 22245678899
Q ss_pred HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeE
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV 210 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~v 210 (488)
++.+|++++++.|+.+|.+.+++.+.+|+.+.|++|+||||+.+.. +++||.+.+++.+++++.+++.+.........+
T Consensus 138 ke~gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~-l~~pG~~~~nv~~ireieda~~l~~~~~~~~~v 216 (478)
T KOG1336|consen 138 KEKGIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKT-LDIPGVELKNVFYLREIEDANRLVAAIQLGGKV 216 (478)
T ss_pred hhcCceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCcccc-CCCCCccccceeeeccHHHHHHHHHHhccCceE
Confidence 9999999999999999999999999999999999999999998764 667898899999999999999998888888999
Q ss_pred EEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC
Q 011351 211 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 290 (488)
Q Consensus 211 vVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~ 290 (488)
+++|+|++|+|+|..|...+.+||++++.+.++++.+.+.+.+.++++++++||+++.++.+.+++.+++|++..|.+.|
T Consensus 217 V~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d 296 (478)
T KOG1336|consen 217 VCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD 296 (478)
T ss_pred EEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred CcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHH
Q 011351 291 GSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 369 (488)
Q Consensus 291 g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~ 369 (488)
|++++||+||+++|.+|++.+++. +..++ .|+|.||+.+||++|||||+|||+.+|.+.++...+++|++.|+..|+.
T Consensus 297 g~~l~adlvv~GiG~~p~t~~~~~-g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~ 375 (478)
T KOG1336|consen 297 GKTLEADLVVVGIGIKPNTSFLEK-GILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQ 375 (478)
T ss_pred CCEeccCeEEEeeccccccccccc-cceecccCCEeehhceeeccCCcccccceeecccccccccccchHHHHHHHHHHh
Confidence 999999999999999999999987 55554 7999999999999999999999999999998887779999999999998
Q ss_pred HHHHHhcCCCCCCCCCCceeEeccccCCCCcceeeEEeeCCCCcEEEEccCC-CcEEEEEEECCEEEEEEeecCChHHhh
Q 011351 370 CIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQ 448 (488)
Q Consensus 370 ~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~ 448 (488)
+...+.......++++||||+..|+.. |+++|+..++.++.|+.+ .+|..+|++ ++.+++.+..+..+...
T Consensus 376 av~ai~~~~~~~~~~lPyf~t~~f~~~-------~~~~G~g~~~~v~~G~~e~~~f~ay~~k-~~~v~a~~~~g~~~~~~ 447 (478)
T KOG1336|consen 376 AVKAIKMAPQDAYDYLPYFYTRFFSLS-------WRFAGDGVGDVVLFGDLEPGSFGAYWIK-GDKVGAVAEGGRDEEVS 447 (478)
T ss_pred hhhhhhccCcccccccchHHHHHhhhh-------ccccCcCccceeeecccccccceeeEee-ccEEEEEeccCCChHHH
Confidence 777776443334779999999999864 899999988888888887 568999999 88888888788888899
Q ss_pred HHHHHHhcCCCCChhhhcCCCcHHHHHHH
Q 011351 449 LLPTLARSQPFVDKAKLQQASSVEEALEI 477 (488)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (488)
.+..++++++.+...++.++.+.+.++..
T Consensus 448 ~~a~l~~~~~~v~~~~~~~~~~~~~~~~~ 476 (478)
T KOG1336|consen 448 QFAKLARQGPEVTSLKLLSKSGDSFWLTI 476 (478)
T ss_pred HHHHHHhcCCcchhhhhccccchhhHHhh
Confidence 99999999999998888888888888765
No 3
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=2.5e-48 Score=414.92 Aligned_cols=381 Identities=19% Similarity=0.321 Sum_probs=306.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCC-CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~-~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
+++|||||+|+||+.+|.+|++.+. ++.+||||+++++++|.++.++.. +... ...++ .....+|
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~-~~~~--~~~~l-----------~~~~~~~ 68 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSY-FSHH--TAEEL-----------SLVREGF 68 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHh-HcCC--CHHHc-----------cCCCHHH
Confidence 4589999999999999999988642 245899999999999999888753 2221 11111 2345788
Q ss_pred HHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCe
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK 209 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~ 209 (488)
+++.+++++.++.|+.+|++.+.|++.+|+.+.||+||||||+.|. .|+++|.+.++++.++++.+...+.+....+++
T Consensus 69 ~~~~gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~-~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~ 147 (847)
T PRK14989 69 YEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPW-IPPIKGSETQDCFVYRTIEDLNAIEACARRSKR 147 (847)
T ss_pred HHhCCCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcC-CCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCe
Confidence 9999999999988999999999999999999999999999999987 466788777889999999999998888888999
Q ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC
Q 011351 210 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 289 (488)
Q Consensus 210 vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~ 289 (488)
++|||+|++|+|+|..|.++|.+|+++++.++++++.+++...+.+.+.|++.||++++++.++++..++++....+.++
T Consensus 148 vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~ 227 (847)
T PRK14989 148 GAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFA 227 (847)
T ss_pred EEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEEC
Confidence 99999999999999999999999999999999998789999999999999999999999999999975433445578889
Q ss_pred CCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHH
Q 011351 290 DGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ 368 (488)
Q Consensus 290 ~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~ 368 (488)
+|+++++|.||+++|++|++++++++|+..+ +|+|.||++++|+.|||||+|||+.+....++ .+..|..||+
T Consensus 228 dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~~g------l~~~a~~~a~ 301 (847)
T PRK14989 228 DGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVFG------LVAPGYKMAQ 301 (847)
T ss_pred CCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCCcCCCCCEEEeecceeEcCcccc------cHHHHHHHHH
Confidence 9999999999999999999999999999875 57899999999999999999999997654433 5667999999
Q ss_pred HHHHHHhcCCCCCCCCCCce-eEeccccCCCCcceeeEEeeCCCCc------EEEEccCCCcEEEEEEE--CCEEEEEEe
Q 011351 369 HCIKALLSAQTHTYDYLPYF-YSRVFEYEGSPRKVWWQFFGDNVGE------TIEIGNFDPKIATFWID--SGKLKGVLV 439 (488)
Q Consensus 369 ~~a~~i~~~~~~~~~~~p~~-~~~~~~~~g~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~--~~~~~g~~~ 439 (488)
.+|.||++.. ..|...... ..+.+++. +..+|...+. ..........|.++.++ +++|+|+++
T Consensus 302 vaa~~i~g~~-~~~~g~~~~~~lk~~G~~-------v~s~G~~~~~~~~~~~~~~~~~~~~~y~Klv~~~~~~~LlGa~l 373 (847)
T PRK14989 302 VAVDHLLGSE-NAFEGADLSAKLKLLGVD-------VGGIGDAHGRTPGARSYVYLDESKEIYKRLIVSEDNKTLLGAVL 373 (847)
T ss_pred HHHHHhcCCC-cCCCCcccceEEEECCcc-------eEecccccCCCCCceeEEEEcCCCCEEEEEEEECCCCEEEEEEE
Confidence 9999999753 334332211 11223221 3344532221 22233334568888875 469999997
Q ss_pred ecCChHHhhHHHHHHhcCCCCC
Q 011351 440 ESGSPEEFQLLPTLARSQPFVD 461 (488)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~ 461 (488)
.|+......+.+++.++..+.
T Consensus 374 -vGd~~~~~~l~~~~~~~~~l~ 394 (847)
T PRK14989 374 -VGDTSDYGNLLQLVLNAIELP 394 (847)
T ss_pred -ECCHHHHHHHHHHHHcCCCCc
Confidence 677778888888887776554
No 4
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=2.8e-48 Score=415.63 Aligned_cols=377 Identities=21% Similarity=0.355 Sum_probs=310.6
Q ss_pred EEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHC
Q 011351 54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEK 133 (488)
Q Consensus 54 vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (488)
|||||||+||+++|.+|++.+..+.+||||+++++++|.++.++. ++... ....++ .....+|+++.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~-~l~g~-~~~~~l-----------~~~~~~~~~~~ 67 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSS-VLQGE-ADLDDI-----------TLNSKDWYEKH 67 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccH-HHCCC-CCHHHc-----------cCCCHHHHHHC
Confidence 699999999999999999976435699999999999999988876 33321 111111 23467889999
Q ss_pred CCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEE
Q 011351 134 GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV 213 (488)
Q Consensus 134 ~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVv 213 (488)
+++++++++|+.||+++++|++.+|+++.||+||||||+.++ .|+++|.+.++++.++++.+++.+.+....+++++||
T Consensus 68 gv~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~-~p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVV 146 (785)
T TIGR02374 68 GITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPF-ILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVI 146 (785)
T ss_pred CCEEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcC-CCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEE
Confidence 999999989999999999999999999999999999999987 4667888788999999999999988888889999999
Q ss_pred CCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcE
Q 011351 214 GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST 293 (488)
Q Consensus 214 G~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~ 293 (488)
|+|++|+|+|..|+++|.+|+++++.++++++.+++.....+.+.+++.||++++++.++++.. ++.+..+.++||++
T Consensus 147 GgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~ 224 (785)
T TIGR02374 147 GGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSS 224 (785)
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCE
Confidence 9999999999999999999999999999998888999999999999999999999999999974 34556788999999
Q ss_pred EEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHH
Q 011351 294 IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 373 (488)
Q Consensus 294 i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~ 373 (488)
+++|.||+++|++|+.+++++++++.+ |+|.||++++|+.|||||+|||+..+...++ .+..|..||+.+|.|
T Consensus 225 i~~D~Vi~a~G~~Pn~~la~~~gl~~~-ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~~~g------l~~~a~~qa~vaA~n 297 (785)
T TIGR02374 225 LEADLIVMAAGIRPNDELAVSAGIKVN-RGIIVNDSMQTSDPDIYAVGECAEHNGRVYG------LVAPLYEQAKVLADH 297 (785)
T ss_pred EEcCEEEECCCCCcCcHHHHhcCCccC-CCEEECCCcccCCCCEEEeeecceeCCcccc------cHHHHHHHHHHHHHH
Confidence 999999999999999999999999886 7899999999999999999999997665433 566789999999999
Q ss_pred HhcCCCCCCCCCCcee-EeccccCCCCcceeeEEeeCCCC-----cEEEEccCCCcEEEEEEECCEEEEEEeecCChHHh
Q 011351 374 LLSAQTHTYDYLPYFY-SRVFEYEGSPRKVWWQFFGDNVG-----ETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEF 447 (488)
Q Consensus 374 i~~~~~~~~~~~p~~~-~~~~~~~g~~~~~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 447 (488)
|++....+|...+... .+.+++. +..+|.... .+......+..|.++++++|+|+|+++ .++....
T Consensus 298 i~g~~~~~~~~~~~~~~lk~~g~~-------v~s~G~~~~~~~~~~~~~~d~~~~~y~kl~~~~~rLlGavl-vgd~~~~ 369 (785)
T TIGR02374 298 ICGVECEEYEGSDLSAKLKLLGVD-------VWSAGDAQETERTTSIKIYDEQKGIYKKLVLSDDKLLGAVL-FGDTSDY 369 (785)
T ss_pred hcCCCCcCCCCCccceEEEECCcc-------eEecccCCCCCCcEEEEEEcCCCCEEEEEEEECCEEEEEEE-ECCHHHH
Confidence 9975434555544321 1233321 334454221 122222233558899999999999997 7788899
Q ss_pred hHHHHHHhcCCCCC
Q 011351 448 QLLPTLARSQPFVD 461 (488)
Q Consensus 448 ~~~~~~~~~~~~~~ 461 (488)
..++++++++..++
T Consensus 370 ~~L~~li~~~~~l~ 383 (785)
T TIGR02374 370 GRLLDMVLKQADIS 383 (785)
T ss_pred HHHHHHHHcCCCCC
Confidence 99999998876554
No 5
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=8.8e-48 Score=382.68 Aligned_cols=362 Identities=23% Similarity=0.361 Sum_probs=286.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
+++|||||||+||+++|..|++.+. +.+||||+++++.+|.+|.++..+. . ...+.++. .....+++
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~~~-~~~Itvi~~~~~~~y~~~~l~~~~~-~-~~~~~~~~----------~~~~~~~~ 68 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQDA-HIPITLITADSGDEYNKPDLSHVFS-Q-GQRADDLT----------RQSAGEFA 68 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCc-CCCEEEEeCCCCCCcCcCcCcHHHh-C-CCCHHHhh----------cCCHHHHH
Confidence 4689999999999999999999875 7899999999999999998765322 1 22221110 11245677
Q ss_pred HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeE
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV 210 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~v 210 (488)
++++++++.+++|+++|++++.+++ ++..+.||+||||||+.+. .|+++|... ++.++++.++..+...+..++++
T Consensus 69 ~~~gv~~~~~~~V~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~-~p~i~G~~~--v~~~~~~~~~~~~~~~~~~~~~v 144 (377)
T PRK04965 69 EQFNLRLFPHTWVTDIDAEAQVVKS-QGNQWQYDKLVLATGASAF-VPPIPGREL--MLTLNSQQEYRAAETQLRDAQRV 144 (377)
T ss_pred HhCCCEEECCCEEEEEECCCCEEEE-CCeEEeCCEEEECCCCCCC-CCCCCCCce--EEEECCHHHHHHHHHHhhcCCeE
Confidence 8899999988899999999888886 5667999999999999986 455666432 77888888888887777788999
Q ss_pred EEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC
Q 011351 211 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 290 (488)
Q Consensus 211 vVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~ 290 (488)
+|||+|++|+|+|..|.+.+.+|+++++.++++++.+++.+...+++.+++.||++++++++++++.+ ++. ..+.+.+
T Consensus 145 vViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~ 222 (377)
T PRK04965 145 LVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKT-DSG-IRATLDS 222 (377)
T ss_pred EEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEcc-CCE-EEEEEcC
Confidence 99999999999999999999999999999999987788899999999999999999999999999854 222 3577889
Q ss_pred CcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHH
Q 011351 291 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC 370 (488)
Q Consensus 291 g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~ 370 (488)
|++++||.||+|+|.+|+.++++.+|+..++ ++.||++++|+.|||||+|||+..+... ...+..|.+||+.+
T Consensus 223 g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~-gi~vd~~l~ts~~~VyA~GD~a~~~~~~------~~~~~~a~~~g~~~ 295 (377)
T PRK04965 223 GRSIEVDAVIAAAGLRPNTALARRAGLAVNR-GIVVDSYLQTSAPDIYALGDCAEINGQV------LPFLQPIQLSAMAL 295 (377)
T ss_pred CcEEECCEEEECcCCCcchHHHHHCCCCcCC-CEEECCCcccCCCCEEEeeecEeECCce------eehHHHHHHHHHHH
Confidence 9999999999999999999999999998875 5999999999999999999999875432 23566789999999
Q ss_pred HHHHhcCCCCCCCCCCceeE-eccccCCCCcceeeEEeeCCCC---cEEEEccCCCcEEEEEEECCEEEEEEeecCChHH
Q 011351 371 IKALLSAQTHTYDYLPYFYS-RVFEYEGSPRKVWWQFFGDNVG---ETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEE 446 (488)
Q Consensus 371 a~~i~~~~~~~~~~~p~~~~-~~~~~~g~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 446 (488)
|+||++.. ..|...+...+ +.++++ +.++|...+ ......+.+..|.++++++|+|+|++++++....
T Consensus 296 a~n~~g~~-~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~g~~~~~ 367 (377)
T PRK04965 296 AKNLLGQN-TPLKLPAMLVKVKTPELP-------LQLAGETQRQDLRWQINAESQGMVAKGVDEAGQLRAFVVSEDRMKE 367 (377)
T ss_pred HHHhcCCC-cccccCCccEEEecCcee-------eEECCCCCCCCceEEEEeCCCCeEEEEEccCCcEEEEEEEChhHHH
Confidence 99999744 45655443222 344432 566676543 1222222235578889999999999985554443
No 6
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=3.7e-48 Score=385.00 Aligned_cols=381 Identities=22% Similarity=0.367 Sum_probs=324.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
.+.++||||.|+||..+..++.+......+||++..+++..|+|..++. ++.+... ..++ .....+|
T Consensus 2 ~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~-vl~~~~~-~edi-----------~l~~~dw 68 (793)
T COG1251 2 KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSS-VLAGEKT-AEDI-----------SLNRNDW 68 (793)
T ss_pred CceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeecc-ccCCCcc-HHHH-----------hccchhh
Confidence 3578999999999999999999965445699999999999999999986 4433222 1111 2456799
Q ss_pred HHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCe
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK 209 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~ 209 (488)
|++++++++.+..|+.||++++.|+++.|.++.||+||+||||.|+. +++||.+.++++.+++..|...+....+..++
T Consensus 69 y~~~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi-~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~ 147 (793)
T COG1251 69 YEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFI-LPIPGSDLPGVFVYRTIDDVEAMLDCARNKKK 147 (793)
T ss_pred HHHcCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCccccc-cCCCCCCCCCeeEEecHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999985 45899999999999999999998888666777
Q ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC
Q 011351 210 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 289 (488)
Q Consensus 210 vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~ 289 (488)
.+|||+|..|+|.|..|...|.++++++..+.++.+++++.....+++.+++.|++++++...+++.. .+++..+.++
T Consensus 148 avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~ 225 (793)
T COG1251 148 AVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFA 225 (793)
T ss_pred cEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhc--CcceeeEeec
Confidence 89999999999999999999999999999999999999999999999999999999999998888873 6677899999
Q ss_pred CCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHH
Q 011351 290 DGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 369 (488)
Q Consensus 290 ~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~ 369 (488)
||+.+++|.||+++|++||.++...+|+..++ +|+||++|+|+.|+|||+|+|+.+....+|. +.-+.+|++.
T Consensus 226 DG~~i~ad~VV~a~GIrPn~ela~~aGlavnr-GIvvnd~mqTsdpdIYAvGEcae~~g~~yGL------VaP~yeq~~v 298 (793)
T COG1251 226 DGTEIPADLVVMAVGIRPNDELAKEAGLAVNR-GIVVNDYMQTSDPDIYAVGECAEHRGKVYGL------VAPLYEQAKV 298 (793)
T ss_pred CCCcccceeEEEecccccccHhHHhcCcCcCC-CeeecccccccCCCeeehhhHHHhcCcccee------hhHHHHHHHH
Confidence 99999999999999999999999999999986 9999999999999999999999988777664 4458899999
Q ss_pred HHHHHhcCCCCCCCC-CCceeEeccccCCCCcceeeEEeeCCC-----CcEEEEccCCCcEEEEEEECCEEEEEEeecCC
Q 011351 370 CIKALLSAQTHTYDY-LPYFYSRVFEYEGSPRKVWWQFFGDNV-----GETIEIGNFDPKIATFWIDSGKLKGVLVESGS 443 (488)
Q Consensus 370 ~a~~i~~~~~~~~~~-~p~~~~~~~~~~g~~~~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 443 (488)
+|.++++.....|.. .++ ......|.. +...|+.. ..+++.......|.++.+++|+|+|++| .|+
T Consensus 299 ~a~hl~~~~~~~y~gsv~s---tkLKv~Gvd----l~S~GD~~e~~~~~~iv~~D~~~~iYKrlvL~dd~IvgavL-~GD 370 (793)
T COG1251 299 LADHLCGGEAEAYEGSVTS---TKLKVSGVD----VFSAGDFQETEGAESIVFRDEQRGIYKKLVLKDDKIVGAVL-YGD 370 (793)
T ss_pred HHHHhccCcccccccccch---hhhcccccc----eeeccchhhcCCCceEEEecccccceeEEEEeCCeEEEEEE-Eee
Confidence 999999865544433 332 333444432 33445432 1345555556779999999999999997 899
Q ss_pred hHHhhHHHHHHhcCCCCC
Q 011351 444 PEEFQLLPTLARSQPFVD 461 (488)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~ 461 (488)
..+-..|..|+.++..++
T Consensus 371 t~d~~~l~~li~~~~~~s 388 (793)
T COG1251 371 TSDGGWLLDLILKGADIS 388 (793)
T ss_pred cccchHHHHHHhcCCCcc
Confidence 999999999998888776
No 7
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=6.7e-46 Score=375.18 Aligned_cols=391 Identities=20% Similarity=0.291 Sum_probs=284.1
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK 131 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (488)
++|||||||+||++||.+|++.+. +.+|+|||+++++.|.++.++. ++........... .....++++
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~-~~~I~li~~~~~~~~~~~~lp~-~~~~~~~~~~~~~----------~~~~~~~~~ 69 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDK-ESDIIIFEKDRDMSFANCALPY-YIGEVVEDRKYAL----------AYTPEKFYD 69 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCC-CCCEEEEECCCCcccccCCcch-hhcCccCCHHHcc----------cCCHHHHHH
Confidence 489999999999999999998764 6799999999998888665543 1111000000000 011234557
Q ss_pred HCCCeEEeCCcEEEEeCCCcEEEeCCC---c--EEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhh-
Q 011351 132 EKGIEMIYQDPVTSIDIEKQTLITNSG---K--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE- 205 (488)
Q Consensus 132 ~~~i~~~~~~~v~~id~~~~~v~~~~g---~--~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~- 205 (488)
+.+++++.+++|++||+++++|++.++ + ++.||+||||||+.+.. |.. +.+++++++++.+...+.+.+.
T Consensus 70 ~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~-~~~---~~~~~~~~~~~~~~~~l~~~l~~ 145 (438)
T PRK13512 70 RKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANS-LGF---ESDITFTLRNLEDTDAIDQFIKA 145 (438)
T ss_pred hCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCC-CCC---CCCCeEEecCHHHHHHHHHHHhh
Confidence 789999988999999999999888653 2 47899999999999864 332 2467788888888877776543
Q ss_pred -cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEE
Q 011351 206 -KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 284 (488)
Q Consensus 206 -~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~ 284 (488)
.+++++|||+|.+|+|+|..|+++|.+|+++++.+++++ .+++++.+.+.+.|++.||++++++++++++..
T Consensus 146 ~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~-~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~------ 218 (438)
T PRK13512 146 NQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK-LMDADMNQPILDELDKREIPYRLNEEIDAINGN------ 218 (438)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch-hcCHHHHHHHHHHHHhcCCEEEECCeEEEEeCC------
Confidence 468999999999999999999999999999999998886 479999999999999999999999999999731
Q ss_pred EEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHH
Q 011351 285 AVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA 363 (488)
Q Consensus 285 ~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A 363 (488)
.+.+++|+++++|.|++++|++|+++++++.|+..+ +|+|.||+++||+.|||||+|||+..+....+..........|
T Consensus 219 ~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A 298 (438)
T PRK13512 219 EVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGA 298 (438)
T ss_pred EEEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcccCCCCEEEeeeeEEeeeccCCCceecccchHH
Confidence 467788889999999999999999999999998875 5779999999999999999999997543322222222344558
Q ss_pred HHHHHHHHHHHhcCCCCCC-CCCCceeEeccccCCCCcceeeEEeeCCCCc-------EEEE---------ccCCCcEEE
Q 011351 364 RQSAQHCIKALLSAQTHTY-DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIEI---------GNFDPKIAT 426 (488)
Q Consensus 364 ~~~g~~~a~~i~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~~~~---------~~~~~~~~~ 426 (488)
.++|+.+|+||++....++ ...+..+...++.. +..+|....+ .... ......+.+
T Consensus 299 ~~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~-------ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~k 371 (438)
T PRK13512 299 HRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYT-------FASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLR 371 (438)
T ss_pred HHHHHHHHHHhcCCCccccCCcccceEEEEcCce-------EEeecCCHHHHccCCcEEEEEecCCcCCCcCCCceEEEE
Confidence 8999999999987432223 22222223333321 2233332210 0000 011234677
Q ss_pred EEEE--CCEEEEEEeecCC-hHHhh-HHHHHHhcCCCCC-hhh--hcCCCcHH
Q 011351 427 FWID--SGKLKGVLVESGS-PEEFQ-LLPTLARSQPFVD-KAK--LQQASSVE 472 (488)
Q Consensus 427 ~~~~--~~~~~g~~~~~~~-~~~~~-~~~~~~~~~~~~~-~~~--~~~~~~~~ 472 (488)
++++ +++|+|+++++.+ +.++. .+..+++.+.+++ ... +..||+++
T Consensus 372 lv~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~ 424 (438)
T PRK13512 372 VYYDTSNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYS 424 (438)
T ss_pred EEEECCCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCC
Confidence 7663 5999999987765 56555 4455678888776 222 46667665
No 8
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=1.3e-45 Score=375.64 Aligned_cols=398 Identities=21% Similarity=0.293 Sum_probs=292.5
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHH
Q 011351 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE 132 (488)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (488)
+|||||||+||+++|..|++.+. +.+|+|||+++.+.|..+.++. +.......+..+ .....+++++
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~-~~~Vtli~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~~ 68 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNK-ELEITVYEKTDIVSFGACGLPY-FVGGFFDDPNTM-----------IARTPEEFIK 68 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCC-CCcEEEEECCCcceeecCCCce-EeccccCCHHHh-----------hcCCHHHHHH
Confidence 79999999999999999999864 6699999999988776544432 221111111111 1345677888
Q ss_pred CCCeEEeCCcEEEEeCCCcEEEeCC---CcEEE--eccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhh--
Q 011351 133 KGIEMIYQDPVTSIDIEKQTLITNS---GKLLK--YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE-- 205 (488)
Q Consensus 133 ~~i~~~~~~~v~~id~~~~~v~~~~---g~~i~--yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~-- 205 (488)
.+++++.+++|+.+|++++.+++.+ +..+. ||+||||||+.+. .|+.+|.+.++++++++..+..++.+.+.
T Consensus 69 ~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~-~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~ 147 (444)
T PRK09564 69 SGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPI-IPPIKNINLENVYTLKSMEDGLALKELLKDE 147 (444)
T ss_pred CCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCC-CCCCCCcCCCCEEEECCHHHHHHHHHHHhhc
Confidence 9999998889999999998888764 55666 9999999999986 45667766678888888887777766553
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 285 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~ 285 (488)
.+++++|+|+|.+|+|+|..+.+.|.+|+++++.+++++..+++++.+.+.+.+++.||++++++++++++. ++.+..
T Consensus 148 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~ 225 (444)
T PRK09564 148 EIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEG 225 (444)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEE
Confidence 468999999999999999999999999999999998887668999999999999999999999999999963 344444
Q ss_pred EEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHH
Q 011351 286 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR 364 (488)
Q Consensus 286 v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~ 364 (488)
+.+++ .++++|.+++|+|.+|+.++++++|++.+ +|+|.||++++|+.|||||+|||+..+....+.......+..|.
T Consensus 226 v~~~~-~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~ 304 (444)
T PRK09564 226 VVTDK-GEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTAN 304 (444)
T ss_pred EEeCC-CEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHH
Confidence 55544 47999999999999999999999998764 67899999999999999999999987655444333345677899
Q ss_pred HHHHHHHHHHhcCCCCCCC-CCCceeEeccccCCCCcceeeEEeeCCCCc---------EEEE---------ccCCCcEE
Q 011351 365 QSAQHCIKALLSAQTHTYD-YLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIEI---------GNFDPKIA 425 (488)
Q Consensus 365 ~~g~~~a~~i~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~---------~~~~---------~~~~~~~~ 425 (488)
+||+.+|+||++... .+. ..+......+++. +..+|....+ .... .+....|.
T Consensus 305 ~qg~~~a~ni~g~~~-~~~~~~~~~~~~~~~~~-------~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (444)
T PRK09564 305 KLGRMVGENLAGRHV-SFKGTLGSACIKVLDLE-------AARTGLTEEEAKKLGIDYKTVFIKDKNHTNYYPGQEDLYV 376 (444)
T ss_pred HHHHHHHHHhcCCCC-CCCCcccceEEEECCEE-------EEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEE
Confidence 999999999997432 221 1111111122221 3334432110 0000 11123467
Q ss_pred EEEE--ECCEEEEEEeecCC-hHH-hhHHHHHHhcCCCCCh-hh-hcC-CCcHHHHH
Q 011351 426 TFWI--DSGKLKGVLVESGS-PEE-FQLLPTLARSQPFVDK-AK-LQQ-ASSVEEAL 475 (488)
Q Consensus 426 ~~~~--~~~~~~g~~~~~~~-~~~-~~~~~~~~~~~~~~~~-~~-~~~-~~~~~~~~ 475 (488)
|+.+ ++++|+|+++++.+ ..+ ...+..+|+++.+++. .. ... +|+++|+.
T Consensus 377 klv~~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~ 433 (444)
T PRK09564 377 KLIYEADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMDFCYAPPFARTW 433 (444)
T ss_pred EEEEECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCCCc
Confidence 7766 46999999986654 544 4455667888888763 22 233 37776554
No 9
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=3.3e-43 Score=348.18 Aligned_cols=396 Identities=23% Similarity=0.339 Sum_probs=280.1
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC----CCCCCccccCCC-----------------CCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE----RPALTKGYLFPL-----------------DKK 107 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~----~~~l~~~~~~~~-----------------~~~ 107 (488)
++++|+||||+|+||..||..+++.|. ++.+||+....... -+--+|.++... ...
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~---kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~ 78 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGL---KVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVP 78 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCC---CEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCC
Confidence 457999999999999999999999998 49999999522110 000111111000 000
Q ss_pred CCCCCCccc---ccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCC--CcEEEeccEEeccCCCCCcCCCCCC
Q 011351 108 PARLPGFHT---CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS--GKLLKYGSLIVATGCTASRFPEKIG 182 (488)
Q Consensus 108 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~--g~~i~yd~lVlAtG~~~~~~~~~~g 182 (488)
..++..+.. ............+++.++++++.+ ...=++ .++|.+.+ .+++.++++|||||++|.. |+.++
T Consensus 79 ~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G-~a~f~~--~~~v~V~~~~~~~~~a~~iiIATGS~p~~-~~~~~ 154 (454)
T COG1249 79 KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRG-EARFVD--PHTVEVTGEDKETITADNIIIATGSRPRI-PPGPG 154 (454)
T ss_pred CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEE-EEEECC--CCEEEEcCCCceEEEeCEEEEcCCCCCcC-CCCCC
Confidence 000000000 000001112233455669999886 333233 56777766 4789999999999999975 44344
Q ss_pred CCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHc
Q 011351 183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 262 (488)
Q Consensus 183 ~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~ 262 (488)
.+...+.+ .+........+++++|||+|.+|+|+|..+.++|.+||++++.+++++. +|+++++.+.+.|++.
T Consensus 155 ~~~~~~~~------s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~-~D~ei~~~~~~~l~~~ 227 (454)
T COG1249 155 IDGARILD------SSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-EDPEISKELTKQLEKG 227 (454)
T ss_pred CCCCeEEe------chhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc-CCHHHHHHHHHHHHhC
Confidence 32222222 2222222367999999999999999999999999999999999999995 8999999999999999
Q ss_pred CcEEEcCCeEEEEEeCCCCcEEEEEeCCCc--EEEcCEEEEeecCccCCh--hhhhcCCcccC-CCEEeCCCCCCCCCCE
Q 011351 263 GVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS--PFERVGLNSSV-GGIQVDGQFRTRMPGI 337 (488)
Q Consensus 263 GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~--~i~~D~vi~a~G~~p~~~--~~~~~gl~~~~-g~i~vd~~~~t~~~~I 337 (488)
|+++++++.+++++..+++ ..+.+++|+ ++++|.|++|+|++||++ -+++.|++.++ |+|.||.+++|++|||
T Consensus 228 gv~i~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~I 305 (454)
T COG1249 228 GVKILLNTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGI 305 (454)
T ss_pred CeEEEccceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCCE
Confidence 9999999999999865444 467888876 799999999999999998 38999999874 8999998888899999
Q ss_pred EEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeEeccccCCCCcceeeEEeeCCCCcE-
Q 011351 338 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET- 414 (488)
Q Consensus 338 fa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~~- 414 (488)
||+|||+..+. ....|..+|+.+|+|+++... ..+..+|+ ..|..+- +.++|....+.
T Consensus 306 yA~GDV~~~~~----------Lah~A~~eg~iaa~~i~g~~~~~~d~~~iP~---~ift~Pe------ia~VGlte~ea~ 366 (454)
T COG1249 306 YAIGDVIGGPM----------LAHVAMAEGRIAAENIAGGKRTPIDYRLIPS---VVFTDPE------IASVGLTEEEAK 366 (454)
T ss_pred EEeeccCCCcc----------cHhHHHHHHHHHHHHHhCCCCCcCcccCCCE---EEECCCc------ceeeeCCHHHHH
Confidence 99999988654 234589999999999997222 24667887 3444432 33455432210
Q ss_pred -----EEEc--c-----------CCCcEEEEEEE--CCEEEEEEeecCChHHhhHHHHH-HhcCCCCCh-h-hhcCCCcH
Q 011351 415 -----IEIG--N-----------FDPKIATFWID--SGKLKGVLVESGSPEEFQLLPTL-ARSQPFVDK-A-KLQQASSV 471 (488)
Q Consensus 415 -----~~~~--~-----------~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~ 471 (488)
+..+ . ....+.|+.++ +++|+|+++++.+++++...-.+ ++.+.+.+. . .++.|||+
T Consensus 367 ~~g~~~~~~~~~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~ 446 (454)
T COG1249 367 EAGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTL 446 (454)
T ss_pred hcCCceEEEEeecccchhHHhccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCCCCCCCh
Confidence 1111 0 12457888775 48999999999999998877665 577775553 3 46999999
Q ss_pred HHHHHHHH
Q 011351 472 EEALEIAR 479 (488)
Q Consensus 472 ~~~~~~~~ 479 (488)
+|++.+++
T Consensus 447 sE~~~~a~ 454 (454)
T COG1249 447 SEALKEAA 454 (454)
T ss_pred HHHHHHhC
Confidence 99999874
No 10
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=1e-43 Score=342.77 Aligned_cols=308 Identities=23% Similarity=0.339 Sum_probs=244.0
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
++++|||||||++|+.+|..|.+.. ++.+||+||+.+++.|. |.+..-.....+..... ..+...
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~-~~~~itLVd~~~~hl~~-plL~eva~g~l~~~~i~-------------~p~~~~ 66 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKL-PDVEITLVDRRDYHLFT-PLLYEVATGTLSESEIA-------------IPLRAL 66 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcC-CCCcEEEEeCCCccccc-hhhhhhhcCCCChhhee-------------ccHHHH
Confidence 4689999999999999999999985 35689999999999887 55543211111111111 234555
Q ss_pred HHHCC-CeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhh---
Q 011351 130 YKEKG-IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--- 205 (488)
Q Consensus 130 ~~~~~-i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~--- 205 (488)
+++.+ +++.. .+|++||+++++|++.++..+.||+||+|+|+.+.. ...+|. .+..+.+++++++.+++..+.
T Consensus 67 ~~~~~~v~~~~-~~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~-fgi~G~-~E~a~~lks~edA~~ir~~l~~~f 143 (405)
T COG1252 67 LRKSGNVQFVQ-GEVTDIDRDAKKVTLADLGEISYDYLVVALGSETNY-FGIPGA-AEYAFGLKTLEDALRLRRHLLEAF 143 (405)
T ss_pred hcccCceEEEE-EEEEEEcccCCEEEeCCCccccccEEEEecCCcCCc-CCCCCH-HHhCCCCCCHHHHHHHHHHHHHHH
Confidence 66444 99988 599999999999999998889999999999999874 444553 344567888899877666542
Q ss_pred -----cC-----CeEEEECCCHHHHHHHHHHHhCC-------------CcEEEEecCCcCcccccCHHHHHHHHHHHHHc
Q 011351 206 -----KA-----KKVVVVGGGYIGMEVAAAAVGWK-------------LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 262 (488)
Q Consensus 206 -----~~-----~~vvVvG~G~~g~e~A~~l~~~g-------------~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~ 262 (488)
.. .+++|+|||++|+|+|.+|.++- .+|+++++.+++++. ++++++++.++.|+++
T Consensus 144 e~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~-~~~~l~~~a~~~L~~~ 222 (405)
T COG1252 144 EKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM-FPPKLSKYAERALEKL 222 (405)
T ss_pred HHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccC-CCHHHHHHHHHHHHHC
Confidence 11 26999999999999999987542 389999999999985 8999999999999999
Q ss_pred CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcE-EEcCEEEEeecCccCChhhhh-cCCccc-CCCEEeCCCCCC-CCCCEE
Q 011351 263 GVKFVKGASIKNLEAGSDGRVAAVKLEDGST-IDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDGQFRT-RMPGIF 338 (488)
Q Consensus 263 GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~-i~~D~vi~a~G~~p~~~~~~~-~gl~~~-~g~i~vd~~~~t-~~~~If 338 (488)
||++++++.|++++++ .|++++|++ |++|.+||++|.+++ +++++ .+++.+ .|++.||+++++ ++||||
T Consensus 223 GV~v~l~~~Vt~v~~~------~v~~~~g~~~I~~~tvvWaaGv~a~-~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IF 295 (405)
T COG1252 223 GVEVLLGTPVTEVTPD------GVTLKDGEEEIPADTVVWAAGVRAS-PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIF 295 (405)
T ss_pred CCEEEcCCceEEECCC------cEEEccCCeeEecCEEEEcCCCcCC-hhhhhcChhhhccCCCEEeCCCcccCCCCCeE
Confidence 9999999999999864 688888884 999999999999998 77888 477766 588999999998 899999
Q ss_pred EEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCce
Q 011351 339 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYF 388 (488)
Q Consensus 339 a~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~~~~p~~ 388 (488)
|+|||+.++.. + ..+...+.|.+||+.+|+||..... ..+..||.
T Consensus 296 a~GD~A~~~~~---~-p~P~tAQ~A~Qqg~~~a~ni~~~l~-g~~l~~f~ 340 (405)
T COG1252 296 AAGDCAAVIDP---R-PVPPTAQAAHQQGEYAAKNIKARLK-GKPLKPFK 340 (405)
T ss_pred EEeccccCCCC---C-CCCChhHHHHHHHHHHHHHHHHHhc-CCCCCCCc
Confidence 99999998764 1 1133667899999999999975322 23445553
No 11
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=1.1e-42 Score=355.00 Aligned_cols=403 Identities=18% Similarity=0.270 Sum_probs=274.4
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CCCCC-Ccccc--------------CCCC---CC
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERPAL-TKGYL--------------FPLD---KK 107 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~--~~~~l-~~~~~--------------~~~~---~~ 107 (488)
++.++||+||||||||++||..|++.|. +|+|||++....- .+... ++.++ +... ..
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~---~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 78 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGM---KVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPV 78 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCC---eEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccC
Confidence 4557999999999999999999999987 8999998642110 00000 11000 0000 00
Q ss_pred CCCCCCcccc---cCCCCCCCCHhHHHHC-CCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCC
Q 011351 108 PARLPGFHTC---VGSGGERQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGG 183 (488)
Q Consensus 108 ~~~~~~~~~~---~~~~~~~~~~~~~~~~-~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~ 183 (488)
..++...... ...........++++. +++++.++.+ ..+.+++.+ +++++.||+||||||+.|. .|+++|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~---~~~~~~v~v-~~~~~~~d~lViATGs~p~-~p~i~G~ 153 (463)
T PRK06370 79 SVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHAR---FESPNTVRV-GGETLRAKRIFINTGARAA-IPPIPGL 153 (463)
T ss_pred ccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEE---EccCCEEEE-CcEEEEeCEEEEcCCCCCC-CCCCCCC
Confidence 0000000000 0000001223455665 8999887543 244667777 4567999999999999987 4566665
Q ss_pred CCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcC
Q 011351 184 YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG 263 (488)
Q Consensus 184 ~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~G 263 (488)
+..++.+.. .+......+++++|||+|.+|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.|++.|
T Consensus 154 ~~~~~~~~~------~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~G 226 (463)
T PRK06370 154 DEVGYLTNE------TIFSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREILEREG 226 (463)
T ss_pred CcCceEcch------HhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-cCHHHHHHHHHHHHhCC
Confidence 444443322 22222245799999999999999999999999999999999999885 78899999999999999
Q ss_pred cEEEcCCeEEEEEeCCCCcEEEEEeC-CCcEEEcCEEEEeecCccCCh-h-hhhcCCccc-CCCEEeCCCCCCCCCCEEE
Q 011351 264 VKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFA 339 (488)
Q Consensus 264 V~v~~~~~v~~i~~~~~~~v~~v~l~-~g~~i~~D~vi~a~G~~p~~~-~-~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa 339 (488)
|++++++++.+++..+++....+... +++++++|.||+|+|.+|+++ + +++.++..+ +|+|.||+++||+.|||||
T Consensus 227 V~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~~~IyA 306 (463)
T PRK06370 227 IDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTNPGIYA 306 (463)
T ss_pred CEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCCCCEEE
Confidence 99999999999986433322223322 345799999999999999988 4 677888775 5779999999999999999
Q ss_pred EceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeEeccccCCCCcceeeEEeeCCCC-----
Q 011351 340 IGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG----- 412 (488)
Q Consensus 340 ~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~----- 412 (488)
+|||+..+. ....|..||+.+|+||++..... +..+|+. ..++.+ +..+|....
T Consensus 307 iGD~~~~~~----------~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~--~~~~p~-------ia~vG~te~~a~~~ 367 (463)
T PRK06370 307 AGDCNGRGA----------FTHTAYNDARIVAANLLDGGRRKVSDRIVPYA--TYTDPP-------LARVGMTEAEARKS 367 (463)
T ss_pred eeecCCCcc----------cHHHHHHHHHHHHHHHhCCCCCCcccccCCeE--EEcCCC-------cEeeeCCHHHHHHc
Confidence 999987532 33468999999999999743333 3345542 222211 333443321
Q ss_pred --cE--EEE----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC--hhhhcCCCcHHH
Q 011351 413 --ET--IEI----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD--KAKLQQASSVEE 473 (488)
Q Consensus 413 --~~--~~~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~ 473 (488)
++ ... .+....+.+++++ +++|+|+++++.++.++... ..+|+++.+++ ...++.|||++|
T Consensus 368 g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 447 (463)
T PRK06370 368 GRRVLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSE 447 (463)
T ss_pred CCCeEEEEEecCcchhHHhcCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCChHH
Confidence 00 000 0112347777775 59999999988887776655 44578888887 344588999999
Q ss_pred HHHHHHccCCc
Q 011351 474 ALEIARAALPV 484 (488)
Q Consensus 474 ~~~~~~~~~~~ 484 (488)
+++.+++++..
T Consensus 448 ~~~~a~~~~~~ 458 (463)
T PRK06370 448 LIPTLAQALRR 458 (463)
T ss_pred HHHHHHHhhhh
Confidence 99999987643
No 12
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=2.8e-42 Score=352.58 Aligned_cols=403 Identities=17% Similarity=0.247 Sum_probs=280.5
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC----CCCCccccC--------CCCCCCCCCCCcc
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER----PALTKGYLF--------PLDKKPARLPGFH 115 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~----~~l~~~~~~--------~~~~~~~~~~~~~ 115 (488)
++.++||+|||||+||++||..|++.|. +|+|||+.+...... ..-++.+.. ........+....
T Consensus 2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~---~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~ 78 (461)
T PRK05249 2 HMYDYDLVVIGSGPAGEGAAMQAAKLGK---RVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKL 78 (461)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCC---EEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcC
Confidence 4567999999999999999999999987 899999865432110 000110000 0000000000000
Q ss_pred cccCCC-----------CCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCc--EEEeccEEeccCCCCCcCCCCCC
Q 011351 116 TCVGSG-----------GERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIG 182 (488)
Q Consensus 116 ~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~--~i~yd~lVlAtG~~~~~~~~~~g 182 (488)
...... ......+++++.+++++.+ .+..++....++...+|+ .+.||+||||||+.|.. |+.++
T Consensus 79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~-p~~~~ 156 (461)
T PRK05249 79 RITFADLLARADHVINKQVEVRRGQYERNRVDLIQG-RARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYR-PPDVD 156 (461)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCC-CCCCC
Confidence 000000 0001233456779999986 566677665566666664 69999999999999864 44344
Q ss_pred CCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHc
Q 011351 183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 262 (488)
Q Consensus 183 ~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~ 262 (488)
...+++++ ++.+......+++++|||+|.+|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.+++.
T Consensus 157 ~~~~~v~~------~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~ 229 (461)
T PRK05249 157 FDHPRIYD------SDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF-LDDEISDALSYHLRDS 229 (461)
T ss_pred CCCCeEEc------HHHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-CCHHHHHHHHHHHHHc
Confidence 33333332 3334444456899999999999999999999999999999999999984 8999999999999999
Q ss_pred CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEE
Q 011351 263 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFA 339 (488)
Q Consensus 263 GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa 339 (488)
||++++++++++++..++ .+ .+.+.+|+++++|.|++|+|.+|++++ ++..++..+ +|++.||+++||+.|||||
T Consensus 230 gI~v~~~~~v~~i~~~~~-~~-~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA 307 (461)
T PRK05249 230 GVTIRHNEEVEKVEGGDD-GV-IVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYA 307 (461)
T ss_pred CCEEEECCEEEEEEEeCC-eE-EEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCCEEE
Confidence 999999999999985433 33 456778889999999999999999885 577888765 5779999999999999999
Q ss_pred EceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeEeccccCCCCcceeeEEeeCCCC------
Q 011351 340 IGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------ 412 (488)
Q Consensus 340 ~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~------ 412 (488)
+|||+..+. ....|..+|+.+|.+|++... ..+..+|.. .|..+- +.++|....
T Consensus 308 iGD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~---i~~~p~------ia~vG~te~~a~~~g 368 (461)
T PRK05249 308 VGDVIGFPS----------LASASMDQGRIAAQHAVGEATAHLIEDIPTG---IYTIPE------ISSVGKTEQELTAAK 368 (461)
T ss_pred eeecCCCcc----------cHhHHHHHHHHHHHHHcCCCcccccCCCCeE---EECCCc------ceEecCCHHHHHHcC
Confidence 999997532 345699999999999996432 234456653 333221 223333211
Q ss_pred --------------cEEEEccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHHH
Q 011351 413 --------------ETIEIGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEE 473 (488)
Q Consensus 413 --------------~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~ 473 (488)
.....+ ....+.+++++ +++|+|+++++.++.++... ..+|+.+.+++ . ..++.|||++|
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~-~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e 447 (461)
T PRK05249 369 VPYEVGRARFKELARAQIAG-DNVGMLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMAE 447 (461)
T ss_pred CCeEEEEEccccccceeecC-CCCcEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHH
Confidence 001111 12457777764 59999999988887776655 44578888876 3 44588999999
Q ss_pred HHHHHHccCCc
Q 011351 474 ALEIARAALPV 484 (488)
Q Consensus 474 ~~~~~~~~~~~ 484 (488)
+++.+++++.+
T Consensus 448 ~~~~~~~~~~~ 458 (461)
T PRK05249 448 AYRVAALDGLN 458 (461)
T ss_pred HHHHHHHHHhc
Confidence 99999876654
No 13
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=1.5e-41 Score=344.14 Aligned_cols=392 Identities=20% Similarity=0.272 Sum_probs=266.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCCccccC--------------CCCCC---C
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYLF--------------PLDKK---P 108 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~-~~l~~~~~~--------------~~~~~---~ 108 (488)
+++||+||||||||++||..+++.|. +|+|||++.. ... + +--++.++. ..... .
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~---~V~liE~~~~-GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 76 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGA---KALLVEAKKL-GGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENT 76 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCC---cEEEeccccc-ccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCc
Confidence 35899999999999999999999987 8999998642 111 0 000110000 00000 0
Q ss_pred CCCCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCC
Q 011351 109 ARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL 185 (488)
Q Consensus 109 ~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~ 185 (488)
.+++...... -..........+++.+++++.++.+. .+.++|.+ +++.+.||+||||||+.|..++.++|.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~---~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~g~~- 151 (450)
T TIGR01421 77 FNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF---TKDGTVEV-NGRDYTAPHILIATGGKPSFPENIPGAE- 151 (450)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCCCc-
Confidence 0000000000 00000012233456799999875432 34566766 5667999999999999986431444422
Q ss_pred CcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcE
Q 011351 186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 265 (488)
Q Consensus 186 ~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~ 265 (488)
... +.+.+......+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.|++.||+
T Consensus 152 ----~~~---~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~-~d~~~~~~~~~~l~~~gI~ 223 (450)
T TIGR01421 152 ----LGT---DSDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS-FDSMISETITEEYEKEGIN 223 (450)
T ss_pred ----eeE---cHHHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc-cCHHHHHHHHHHHHHcCCE
Confidence 111 22333333345799999999999999999999999999999999999864 8999999999999999999
Q ss_pred EEcCCeEEEEEeCCCCcEEEEEeCCC-cEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEEEc
Q 011351 266 FVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIG 341 (488)
Q Consensus 266 v~~~~~v~~i~~~~~~~v~~v~l~~g-~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~G 341 (488)
+++++.+++++.++++. ..+.+++| +++++|.|++++|++|++++ ++..+++.+ +|++.||++++|++|||||+|
T Consensus 224 i~~~~~v~~i~~~~~~~-~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiG 302 (450)
T TIGR01421 224 VHKLSKPVKVEKTVEGK-LVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALG 302 (450)
T ss_pred EEcCCEEEEEEEeCCce-EEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCEEEEE
Confidence 99999999998643332 35677777 57999999999999999985 577888875 577999999999999999999
Q ss_pred eecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeEeccccCCCCcceeeEEeeCCCCc-----
Q 011351 342 DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE----- 413 (488)
Q Consensus 342 D~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~----- 413 (488)
||+..+. .+..|..+|+.+|++|+++.. ..+..+|. ..|..+- +..+|....+
T Consensus 303 D~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~---~~f~~p~------ia~vGlte~~a~~~~ 363 (450)
T TIGR01421 303 DVVGKVE----------LTPVAIAAGRKLSERLFNGKTDDKLDYNNVPT---VVFSHPP------IGTIGLTEKEAIEKY 363 (450)
T ss_pred ecCCCcc----------cHHHHHHHHHHHHHHHhcCCCCCccCcccCCe---EEeCCCc------eEEEeCCHHHHHhhc
Confidence 9997532 345689999999999986432 23455664 2333221 2223322110
Q ss_pred ----EE-EEc-----------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHH
Q 011351 414 ----TI-EIG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVE 472 (488)
Q Consensus 414 ----~~-~~~-----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~ 472 (488)
.. ... +....+.++.++ +++|+|+++++.++.++... ..+|+++.+++ . ..++.|||++
T Consensus 364 g~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~ 443 (450)
T TIGR01421 364 GKENIKVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSS 443 (450)
T ss_pred CCCCEEEEEEEcChhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChH
Confidence 00 000 112346677664 69999999988878776655 55678888886 3 3358899999
Q ss_pred HHHHHH
Q 011351 473 EALEIA 478 (488)
Q Consensus 473 ~~~~~~ 478 (488)
|++..+
T Consensus 444 e~~~~~ 449 (450)
T TIGR01421 444 EELVTM 449 (450)
T ss_pred HHHhhc
Confidence 998765
No 14
>PLN02507 glutathione reductase
Probab=100.00 E-value=9e-41 Score=341.43 Aligned_cols=396 Identities=18% Similarity=0.228 Sum_probs=273.6
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC---------CCCCCC---C-CCCCccccCC--------C-CC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE---------AYAPYE---R-PALTKGYLFP--------L-DK 106 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~---------~~~~~~---~-~~l~~~~~~~--------~-~~ 106 (488)
..++||+|||||+||+.||..+++.|. +|+|||+. ...... + +--++.++.. . ..
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~---~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~ 99 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGA---KVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKN 99 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHh
Confidence 346899999999999999999999987 89999962 111110 0 0001111000 0 00
Q ss_pred CCCCCCCcccccCC-----------CCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCc--EEEeccEEeccCCC
Q 011351 107 KPARLPGFHTCVGS-----------GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCT 173 (488)
Q Consensus 107 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~--~i~yd~lVlAtG~~ 173 (488)
.-.+.......... .........+...+++++.+ ++..+++...+|++.+|+ .+.||+||||||+.
T Consensus 100 ~G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~ 178 (499)
T PLN02507 100 YGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSR 178 (499)
T ss_pred cCcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCC
Confidence 00000000000000 00000113345579999985 788888887888887876 58899999999999
Q ss_pred CCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHH
Q 011351 174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ 253 (488)
Q Consensus 174 ~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~ 253 (488)
+. .|.++|.+ ...+..+...+ ...+++++|||+|.+|+|+|..+.++|.+|+++++.+++++. +++++.+
T Consensus 179 p~-~p~ipG~~-----~~~~~~~~~~l---~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~ 248 (499)
T PLN02507 179 AQ-RPNIPGKE-----LAITSDEALSL---EELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG-FDDEMRA 248 (499)
T ss_pred CC-CCCCCCcc-----ceechHHhhhh---hhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc-cCHHHHH
Confidence 86 35444421 11222333222 235789999999999999999999999999999999988874 8999999
Q ss_pred HHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCC
Q 011351 254 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQF 330 (488)
Q Consensus 254 ~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~ 330 (488)
.+.+.|++.||++++++++++++..+ +.+ .+.+.+|+++++|.|++++|++|++++ +++++++.+ +|+|.||+++
T Consensus 249 ~l~~~l~~~GI~i~~~~~V~~i~~~~-~~~-~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~ 326 (499)
T PLN02507 249 VVARNLEGRGINLHPRTNLTQLTKTE-GGI-KVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYS 326 (499)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEeC-CeE-EEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCC
Confidence 99999999999999999999998543 333 467778889999999999999999986 678888875 5779999999
Q ss_pred CCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeEeccccCCCCcceeeEEee
Q 011351 331 RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFG 408 (488)
Q Consensus 331 ~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g 408 (488)
||+.|||||+|||+..+. ....|..||+.+|+||+++... .+..+|. ..|+++- +..+|
T Consensus 327 ~Ts~p~IyAiGDv~~~~~----------l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~---~if~~p~------ia~vG 387 (499)
T PLN02507 327 RTNIPSIWAIGDVTNRIN----------LTPVALMEGTCFAKTVFGGQPTKPDYENVAC---AVFCIPP------LSVVG 387 (499)
T ss_pred cCCCCCEEEeeEcCCCCc----------cHHHHHHHHHHHHHHHcCCCCCcCCCCCCCe---EEECCCc------cEEEe
Confidence 999999999999997432 3456999999999999875432 2344553 3444321 22233
Q ss_pred CCCC--------cEE------------EEccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-h
Q 011351 409 DNVG--------ETI------------EIGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-A 463 (488)
Q Consensus 409 ~~~~--------~~~------------~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~ 463 (488)
.... ... ..+.....+.++.++ +++|+|+++++.++.++... ..+|+.+.+++ . .
T Consensus 388 lte~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~ 467 (499)
T PLN02507 388 LSEEEAVEQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDS 467 (499)
T ss_pred CCHHHHHhccCCCEEEEEeecCccccccccCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhh
Confidence 2210 000 011112347777764 58999999888777766655 45678888886 2 4
Q ss_pred hhcCCCcHHHHHHHHH
Q 011351 464 KLQQASSVEEALEIAR 479 (488)
Q Consensus 464 ~~~~~~~~~~~~~~~~ 479 (488)
.++.|||++|.+..++
T Consensus 468 ~~~~hPt~~E~~~~~~ 483 (499)
T PLN02507 468 TVGIHPSAAEEFVTMR 483 (499)
T ss_pred cCcCCCChHHHHHHHH
Confidence 4589999999998875
No 15
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.9e-41 Score=345.95 Aligned_cols=401 Identities=17% Similarity=0.264 Sum_probs=272.6
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCC-CCCCccccC-----C-CCCCC--CCC----C
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YER-PALTKGYLF-----P-LDKKP--ARL----P 112 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~-~~l~~~~~~-----~-~~~~~--~~~----~ 112 (488)
...++||+|||||+||++||..|++.|. +|+|||++..-. .++ +--++.++. . ..... .-+ +
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~---~v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~ 79 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGA---RVTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAP 79 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCC---cEEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCC
Confidence 4567999999999999999999999987 899999874210 000 000110000 0 00000 000 0
Q ss_pred Ccc--cccC------CCCCC-CCHhHHHH-CCCeEEeCCcEEEEeCCCcEEEeCCCc--EEEeccEEeccCCCCCcCCCC
Q 011351 113 GFH--TCVG------SGGER-QTPEWYKE-KGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEK 180 (488)
Q Consensus 113 ~~~--~~~~------~~~~~-~~~~~~~~-~~i~~~~~~~v~~id~~~~~v~~~~g~--~i~yd~lVlAtG~~~~~~~~~ 180 (488)
.+. .... ..... .....++. .+++++.+ ++..+|+...+|++.+|. ++.||+||||||+.|. .|++
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~-~p~i 157 (468)
T PRK14694 80 VVDRSALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPA-EPPV 157 (468)
T ss_pred ccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCC-CCCC
Confidence 000 0000 00000 01122333 37898875 789999888888888773 6999999999999986 4555
Q ss_pred CCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHH
Q 011351 181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 260 (488)
Q Consensus 181 ~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~ 260 (488)
+|.+...+.+. .+... ....+++++|||+|++|+|+|..|.++|.+|+++.+ +++++. +++++.+.+++.|+
T Consensus 158 ~G~~~~~~~~~---~~~~~---l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l~~-~~~~~~~~l~~~l~ 229 (468)
T PRK14694 158 PGLAETPYLTS---TSALE---LDHIPERLLVIGASVVALELAQAFARLGSRVTVLAR-SRVLSQ-EDPAVGEAIEAAFR 229 (468)
T ss_pred CCCCCCceEcc---hhhhc---hhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC-CCCCCC-CCHHHHHHHHHHHH
Confidence 66432222221 22222 223478999999999999999999999999999986 467764 78999999999999
Q ss_pred HcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhh--hhcCCcccCCCEEeCCCCCCCCCCEE
Q 011351 261 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIF 338 (488)
Q Consensus 261 ~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~~g~i~vd~~~~t~~~~If 338 (488)
+.||++++++.+++++.+ ++.+ .+.+.++ ++++|.|++++|.+|+++++ ++++++.++|+|.||++++|++||||
T Consensus 230 ~~GI~v~~~~~v~~i~~~-~~~~-~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~~~Ts~~~Iy 306 (468)
T PRK14694 230 REGIEVLKQTQASEVDYN-GREF-ILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQTTVSGIY 306 (468)
T ss_pred hCCCEEEeCCEEEEEEEc-CCEE-EEEECCC-EEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCCcccCCCCEE
Confidence 999999999999999854 3322 3555444 69999999999999999874 56788777788999999999999999
Q ss_pred EEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeEeccccCCCCcceeeEEeeCCCC-----
Q 011351 339 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG----- 412 (488)
Q Consensus 339 a~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~----- 412 (488)
|+|||+..+. ....|..+|+.+|.||++... ..+..+|.+ ..++.+ +..+|....
T Consensus 307 A~GD~~~~~~----------~~~~A~~~G~~aa~~i~~~~~~~~~~~~p~~--~~~~p~-------~a~vGlte~~a~~~ 367 (468)
T PRK14694 307 AAGDCTDQPQ----------FVYVAAAGGSRAAINMTGGDASLDLSAMPEV--IFTDPQ-------VATVGLSEAEAQAQ 367 (468)
T ss_pred EEeecCCCcc----------cHHHHHHHHHHHHHHhcCCCcccccCCCCeE--EECCCC-------eEEeeCCHHHHHHc
Confidence 9999997543 345688899999999986432 223345543 222221 333444321
Q ss_pred --cE--EEE----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHHH
Q 011351 413 --ET--IEI----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEE 473 (488)
Q Consensus 413 --~~--~~~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~ 473 (488)
+. ... ......+.++.++ +++|+|+++++.++.++... ..+|+.+.+++ . ...+.|||++|
T Consensus 368 g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 447 (468)
T PRK14694 368 GYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTMVE 447 (468)
T ss_pred CCceEEEEEecccchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCchHH
Confidence 00 000 1112347777763 59999999877777776655 44578888886 3 34588999999
Q ss_pred HHHHHHccCC
Q 011351 474 ALEIARAALP 483 (488)
Q Consensus 474 ~~~~~~~~~~ 483 (488)
+++.+++.+.
T Consensus 448 ~~~~~~~~~~ 457 (468)
T PRK14694 448 GLKLCAQTFT 457 (468)
T ss_pred HHHHHHHhhh
Confidence 9999888653
No 16
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=8e-41 Score=340.36 Aligned_cols=393 Identities=20% Similarity=0.286 Sum_probs=271.0
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCC-CCCCccccC-----------------CCCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YER-PALTKGYLF-----------------PLDKKPA 109 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~-~~l~~~~~~-----------------~~~~~~~ 109 (488)
.++||+||||||||++||..|+++|. +|+|||++..-. .++ +--++.++. .......
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~---~V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 79 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGA---KVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKF 79 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCc
Confidence 35899999999999999999999987 899999863210 000 000000000 0000000
Q ss_pred CCCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCC
Q 011351 110 RLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP 186 (488)
Q Consensus 110 ~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~ 186 (488)
++....... -..........+.+.+++++.+ ++..++ .++|++ +++++.||+||||||+.|. .|+++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~v~--~~~v~~-~g~~~~~d~lViATGs~p~-~p~i~g~--- 151 (450)
T PRK06116 80 DWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEG-FARFVD--AHTVEV-NGERYTADHILIATGGRPS-IPDIPGA--- 151 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcc--CCEEEE-CCEEEEeCEEEEecCCCCC-CCCCCCc---
Confidence 000000000 0000001123345679999986 566665 467777 6778999999999999986 4544442
Q ss_pred cEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEE
Q 011351 187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 266 (488)
Q Consensus 187 gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v 266 (488)
....+ ++.+......+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+++ .+++++.+.+.+.|++.||++
T Consensus 152 --~~~~~---~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~L~~~GV~i 225 (450)
T PRK06116 152 --EYGIT---SDGFFALEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR-GFDPDIRETLVEEMEKKGIRL 225 (450)
T ss_pred --ceeEc---hhHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc-ccCHHHHHHHHHHHHHCCcEE
Confidence 22211 222222234578999999999999999999999999999999998886 479999999999999999999
Q ss_pred EcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEEEcee
Q 011351 267 VKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDV 343 (488)
Q Consensus 267 ~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~ 343 (488)
++++++++++..+++.+ .+.+.+|+++++|.|++|+|.+|+++. ++..+++.+ +|+|.||+++||++|||||+|||
T Consensus 226 ~~~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~ 304 (450)
T PRK06116 226 HTNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDV 304 (450)
T ss_pred ECCCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEEEEeec
Confidence 99999999986544433 467788889999999999999999885 577888875 57799999999999999999999
Q ss_pred cccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-C--CCCCCCceeEeccccCCCCcceeeEEeeCCCC-------c
Q 011351 344 AAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-H--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------E 413 (488)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~-~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~ 413 (488)
+..+. .+..|..||+.+|+||++... . .+..+|+ ..|+.+- +..+|.... +
T Consensus 305 ~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~---~if~~p~------~a~vGlte~~a~~~~~~ 365 (450)
T PRK06116 305 TGRVE----------LTPVAIAAGRRLSERLFNNKPDEKLDYSNIPT---VVFSHPP------IGTVGLTEEEAREQYGE 365 (450)
T ss_pred CCCcC----------cHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCe---EEeCCCc------cEEeeCCHHHHHHhCCC
Confidence 86432 455799999999999997433 2 3455664 3344321 223343211 1
Q ss_pred --EEE-Ec-----------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHHHH
Q 011351 414 --TIE-IG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEA 474 (488)
Q Consensus 414 --~~~-~~-----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~ 474 (488)
... .. +....+.+++++ +++|+|+++++.++.++... ..+|+++.+++ . ..++.|||++|+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~ 445 (450)
T PRK06116 366 DNVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAEE 445 (450)
T ss_pred CcEEEEEEecchhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHH
Confidence 110 00 112357777774 59999999988777776654 55678888886 2 345889999999
Q ss_pred HHHHH
Q 011351 475 LEIAR 479 (488)
Q Consensus 475 ~~~~~ 479 (488)
+..++
T Consensus 446 ~~~~~ 450 (450)
T PRK06116 446 FVTMR 450 (450)
T ss_pred HhhcC
Confidence 98763
No 17
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2.6e-41 Score=344.30 Aligned_cols=403 Identities=15% Similarity=0.214 Sum_probs=270.8
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-CccccC---------C-------CCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TKGYLF---------P-------LDKKP 108 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~~~l-~~~~~~---------~-------~~~~~ 108 (488)
+.++||+|||||+||++||..+++.|. +|+|||+.+.+... +... ++.++. . .....
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~---~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~ 78 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGL---ETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPK 78 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCC
Confidence 346899999999999999999999987 89999987533211 0000 111110 0 00000
Q ss_pred CCCCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCC--cEEEeccEEeccCCCCCcCCCCCCC
Q 011351 109 ARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGG 183 (488)
Q Consensus 109 ~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~i~yd~lVlAtG~~~~~~~~~~g~ 183 (488)
.++..+.... -..........+++.+++++.+ .+.-++.....|...+| .++.||+||||||+.|..+|.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g-~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~- 156 (471)
T PRK06467 79 IDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNG-LGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPH- 156 (471)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCC-
Confidence 0000000000 0000001123345679999986 45555543334444456 469999999999999865454333
Q ss_pred CCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcC
Q 011351 184 YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG 263 (488)
Q Consensus 184 ~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~G 263 (488)
..+++.+ .....+....+++++|||+|.+|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.|++.
T Consensus 157 ~~~~v~~------~~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~-~d~~~~~~~~~~l~~~- 228 (471)
T PRK06467 157 DDPRIWD------STDALELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA-ADKDIVKVFTKRIKKQ- 228 (471)
T ss_pred CCCcEEC------hHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-CCHHHHHHHHHHHhhc-
Confidence 2333332 2222222345789999999999999999999999999999999999985 7999999999999998
Q ss_pred cEEEcCCeEEEEEeCCCCcEEEEEeCC--C--cEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCC
Q 011351 264 VKFVKGASIKNLEAGSDGRVAAVKLED--G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPG 336 (488)
Q Consensus 264 V~v~~~~~v~~i~~~~~~~v~~v~l~~--g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~ 336 (488)
|++++++++++++..++ .+ .+.+.+ + +++++|.||+++|++|++++ ++..+++.+ +|+|.||+++||+.||
T Consensus 229 v~i~~~~~v~~i~~~~~-~~-~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~ 306 (471)
T PRK06467 229 FNIMLETKVTAVEAKED-GI-YVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPH 306 (471)
T ss_pred eEEEcCCEEEEEEEcCC-EE-EEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCCC
Confidence 99999999999985433 22 344433 2 46999999999999999985 467788875 6779999999999999
Q ss_pred EEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeEeccccCCCCcceeeEEeeCCCCc--
Q 011351 337 IFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-- 413 (488)
Q Consensus 337 Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-- 413 (488)
|||+|||+..+. ....|..+|+.+|.+|++... ..+..+|+. ..++.+ +..+|....+
T Consensus 307 VyAiGDv~~~~~----------la~~A~~eG~~aa~~i~g~~~~~~~~~~p~~--~~~~p~-------ia~vGlte~ea~ 367 (471)
T PRK06467 307 IFAIGDIVGQPM----------LAHKGVHEGHVAAEVIAGKKHYFDPKVIPSI--AYTEPE-------VAWVGLTEKEAK 367 (471)
T ss_pred EEEehhhcCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeE--EECCCc-------eeEEECCHHHHH
Confidence 999999996432 455699999999999987432 223446653 222221 3334433210
Q ss_pred -----E--EEE----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcH
Q 011351 414 -----T--IEI----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSV 471 (488)
Q Consensus 414 -----~--~~~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~ 471 (488)
. ... .+....+.++.++ +++|+|+++++.++.++... ..+|+.+.+++ . ..++.||++
T Consensus 368 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~~~hPt~ 447 (471)
T PRK06467 368 EEGIEYETATFPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTL 447 (471)
T ss_pred hcCCCeEEEEEecCcchhhhhCCCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCh
Confidence 0 000 0112347777774 58999999988888776655 44578888876 3 335789999
Q ss_pred HHHHHHHHccCCcc
Q 011351 472 EEALEIARAALPVE 485 (488)
Q Consensus 472 ~~~~~~~~~~~~~~ 485 (488)
+|+++.|++.+..+
T Consensus 448 ~e~~~~a~~~~~~~ 461 (471)
T PRK06467 448 HESVGLAAEAFEGS 461 (471)
T ss_pred HHHHHHHHHhhcCC
Confidence 99999998776543
No 18
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2.3e-41 Score=345.63 Aligned_cols=401 Identities=22% Similarity=0.300 Sum_probs=273.2
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCC-CCCCccccCCCC---------CCCCCC--C--C
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YER-PALTKGYLFPLD---------KKPARL--P--G 113 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~-~~l~~~~~~~~~---------~~~~~~--~--~ 113 (488)
..+||+|||||+||++||..|++.|. +|+|||++..-. ..+ +-.++.++.... ..-... . .
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~---~V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGL---KVAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGID 79 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCC---cEEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccC
Confidence 46899999999999999999999987 899999876211 000 000111110000 000000 0 0
Q ss_pred ccccc------CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCC-CcEEEeccEEeccCCCCCcCCCCCCCCCC
Q 011351 114 FHTCV------GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS-GKLLKYGSLIVATGCTASRFPEKIGGYLP 186 (488)
Q Consensus 114 ~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~-g~~i~yd~lVlAtG~~~~~~~~~~g~~~~ 186 (488)
+.... ...........+++.+++++.+ +++.+++...++...+ ++.+.||+||||||+.+..+ ++...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~---pg~~~~ 155 (462)
T PRK06416 80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRG-EAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPREL---PGIEID 155 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCC---CCCCCC
Confidence 00000 0000001223455679999986 6666776555555323 46799999999999988643 233333
Q ss_pred cEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEE
Q 011351 187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 266 (488)
Q Consensus 187 gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v 266 (488)
+.. +.+..+.. .....+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.+++.||++
T Consensus 156 ~~~-v~~~~~~~---~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~i 230 (462)
T PRK06416 156 GRV-IWTSDEAL---NLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG-EDKEISKLAERALKKRGIKI 230 (462)
T ss_pred CCe-EEcchHhh---CccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-CCHHHHHHHHHHHHHcCCEE
Confidence 322 22222222 22235689999999999999999999999999999999999985 78999999999999999999
Q ss_pred EcCCeEEEEEeCCCCcEEEEEeCCC---cEEEcCEEEEeecCccCChhh--hhcCCcccCCCEEeCCCCCCCCCCEEEEc
Q 011351 267 VKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIFAIG 341 (488)
Q Consensus 267 ~~~~~v~~i~~~~~~~v~~v~l~~g---~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~~g~i~vd~~~~t~~~~Ifa~G 341 (488)
++++++++++.++ +.+ .+.+.+| +++++|.||+++|.+|+++++ ++.++..++|++.||++++|+.|+|||+|
T Consensus 231 ~~~~~V~~i~~~~-~~v-~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~~~t~~~~VyAiG 308 (462)
T PRK06416 231 KTGAKAKKVEQTD-DGV-TVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLRTNVPNIYAIG 308 (462)
T ss_pred EeCCEEEEEEEeC-CEE-EEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeECCCCccCCCCEEEee
Confidence 9999999998643 333 4555555 679999999999999998874 67888777778999999999999999999
Q ss_pred eecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCC--CCCceeEeccccCCCCcceeeEEeeCCCCc------
Q 011351 342 DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYD--YLPYFYSRVFEYEGSPRKVWWQFFGDNVGE------ 413 (488)
Q Consensus 342 D~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~~--~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~------ 413 (488)
||+..+. .+..|..||+.+|.||++. ..+++ .+|. ...++.. +..+|....+
T Consensus 309 D~~~~~~----------~~~~A~~~g~~aa~ni~~~-~~~~~~~~~~~--~~~~~~~-------~a~vG~te~~a~~~g~ 368 (462)
T PRK06416 309 DIVGGPM----------LAHKASAEGIIAAEAIAGN-PHPIDYRGIPA--VTYTHPE-------VASVGLTEAKAKEEGF 368 (462)
T ss_pred ecCCCcc----------hHHHHHHHHHHHHHHHcCC-CCCCCCCCCCe--EEECCCc-------eEEEeCCHHHHHhcCC
Confidence 9997432 4567999999999999974 33333 3443 2333322 3344543211
Q ss_pred -EE-EEc-----------cCCCcEEEEEE--ECCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHHHHH
Q 011351 414 -TI-EIG-----------NFDPKIATFWI--DSGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEAL 475 (488)
Q Consensus 414 -~~-~~~-----------~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~ 475 (488)
.. ... +....+.++.+ ++++|+|+++++.++.++... ..+|+++.+++ . .....|||+.|++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~ 448 (462)
T PRK06416 369 DVKVVKFPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSEAL 448 (462)
T ss_pred CeEEEEEecCcChHhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHH
Confidence 00 000 01234677766 369999999888887776655 45578888886 3 3357899999999
Q ss_pred HHHHccCCc
Q 011351 476 EIARAALPV 484 (488)
Q Consensus 476 ~~~~~~~~~ 484 (488)
+.+++.+..
T Consensus 449 ~~~~~~~~~ 457 (462)
T PRK06416 449 GEAALAAAG 457 (462)
T ss_pred HHHHHHhcc
Confidence 999876643
No 19
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=6.5e-41 Score=339.90 Aligned_cols=391 Identities=18% Similarity=0.242 Sum_probs=269.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCCccccC--------------CC--CCCCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYLF--------------PL--DKKPAR 110 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~-~~l~~~~~~--------------~~--~~~~~~ 110 (488)
++||+||||||||++||..+++.|. +|+|||++. .... + +--++.++. .. .....+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~---~V~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 77 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGA---KVAIAEEPR-VGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFD 77 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCC---cEEEEecCc-cCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcC
Confidence 5899999999999999999999998 899999853 2111 0 000110000 00 000000
Q ss_pred CCCccc---ccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCc
Q 011351 111 LPGFHT---CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG 187 (488)
Q Consensus 111 ~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~g 187 (488)
+..... ..-..........+++.+++++.+ ++..+++....+. .+|+.+.||+||||||+.|. .|+++|.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~~~v~v~-~~g~~~~~d~lIiATGs~p~-~p~i~G~~--- 151 (446)
T TIGR01424 78 WKKLLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGPNTVEVL-QDGTTYTAKKILIAVGGRPQ-KPNLPGHE--- 151 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEe-cCCeEEEcCEEEEecCCcCC-CCCCCCcc---
Confidence 000000 000000112234456779999885 7888877544443 46778999999999999986 45444422
Q ss_pred EEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEE
Q 011351 188 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267 (488)
Q Consensus 188 v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~ 267 (488)
...+ ++........+++++|||+|.+|+|+|..+.+.|.+|+++++.+.+++. +++++.+.+.+.|++.||+++
T Consensus 152 --~~~~---~~~~~~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~ 225 (446)
T TIGR01424 152 --LGIT---SNEAFHLPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG-FDDDMRALLARNMEGRGIRIH 225 (446)
T ss_pred --ceec---hHHhhcccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc-cCHHHHHHHHHHHHHCCCEEE
Confidence 1111 2222222235789999999999999999999999999999999998875 789999999999999999999
Q ss_pred cCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEEEceec
Q 011351 268 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVA 344 (488)
Q Consensus 268 ~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a 344 (488)
+++++++++..+++ ..+.+.+|+++++|.|++|+|.+|+++. ++..+++.+ +|+|.||+++||++|||||+|||+
T Consensus 226 ~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~ 303 (446)
T TIGR01424 226 PQTSLTSITKTDDG--LKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVGDVT 303 (446)
T ss_pred eCCEEEEEEEcCCe--EEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEeeccC
Confidence 99999999854333 2466778889999999999999999875 577888765 577999999999999999999999
Q ss_pred ccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeEeccccCCCCcceeeEEeeCCCC--------cE
Q 011351 345 AFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--------ET 414 (488)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~--------~~ 414 (488)
..+. ....|..||+.+|.||+++...+ +..+|+. .|+.+- +.++|.... ..
T Consensus 304 ~~~~----------l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~~---if~~p~------ia~vG~te~~a~~~~~~~~ 364 (446)
T TIGR01424 304 DRIN----------LTPVAIMEATCFANTEFGNNPTKFDHDLIATA---VFSQPP------LGTVGLTEEEAREKFTGDI 364 (446)
T ss_pred CCcc----------chhHHHHHHHHHHHHHhcCCCCccCcCCCCeE---EeCCch------hEEEECCHHHHHhhcCCCE
Confidence 6422 34568999999999999744322 3445643 333321 223333210 00
Q ss_pred --EE----------EccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHHHHHHH
Q 011351 415 --IE----------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALEI 477 (488)
Q Consensus 415 --~~----------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~~ 477 (488)
.. ....+..+.++.++ +++|+|+++++.++.++... ..+|+++.+++ . ..++.|||++|++..
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~ 444 (446)
T TIGR01424 365 LVYRAGFRPMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTVGIHPSSAEEFVT 444 (446)
T ss_pred EEEEEecCchHhHhhcCCCceEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCChHHHHhh
Confidence 00 01112357777774 59999999988888776655 45678888887 3 445889999999876
Q ss_pred H
Q 011351 478 A 478 (488)
Q Consensus 478 ~ 478 (488)
+
T Consensus 445 ~ 445 (446)
T TIGR01424 445 M 445 (446)
T ss_pred c
Confidence 5
No 20
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=6.8e-41 Score=339.98 Aligned_cols=396 Identities=18% Similarity=0.236 Sum_probs=269.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC----CC-CccccCCCCCCCCCCCCcccc---cCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP----AL-TKGYLFPLDKKPARLPGFHTC---VGSG 121 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~----~l-~~~~~~~~~~~~~~~~~~~~~---~~~~ 121 (488)
+++||+|||||+||++||..|++.|. +|+|||+++....... .. ++.++.. .....++...... ....
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~---~V~lie~~~~~~GG~~~~~gcip~k~l~~~-~~~~~~~~~~~~~~~~~~~~ 77 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGW---RVALIEQSNAMYGGTCINIGCIPTKTLVHD-AQQHTDFVRAIQRKNEVVNF 77 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCC---eEEEEcCCCCccceeEeeccccchHHHHHH-hccCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999987 8999998753211100 00 0100000 0000000000000 0000
Q ss_pred CCCCC-HhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCc-EEEeccEEeccCCCCCcCCCCCCCC-CCcEEEecCHHHHH
Q 011351 122 GERQT-PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTASRFPEKIGGY-LPGVHYIRDVADAD 198 (488)
Q Consensus 122 ~~~~~-~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~-~i~yd~lVlAtG~~~~~~~~~~g~~-~~gv~~~~~~~~~~ 198 (488)
..... .+..+..+++++.+ ++..++.....|.+.++. ++.||+||||||+.+. .|+++|.+ .+++++ +.
T Consensus 78 ~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~-~p~i~G~~~~~~v~~------~~ 149 (441)
T PRK08010 78 LRNKNFHNLADMPNIDVIDG-QAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTV-VPPIPGITTTPGVYD------ST 149 (441)
T ss_pred HHHhHHHHHhhcCCcEEEEE-EEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCC-CCCCCCccCCCCEEC------hh
Confidence 00000 11122348998875 677788766677777775 6999999999999986 45666642 344433 23
Q ss_pred HHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeC
Q 011351 199 ALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 278 (488)
Q Consensus 199 ~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~ 278 (488)
.+......+++++|||+|.+|+|+|..|.++|.+|+++++.+.+++. +++++.+.+.+.|++.||++++++++++++.+
T Consensus 150 ~~~~~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~ 228 (441)
T PRK08010 150 GLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR-EDRDIADNIATILRDQGVDIILNAHVERISHH 228 (441)
T ss_pred HhhcccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc
Confidence 33333346789999999999999999999999999999999999886 58899999999999999999999999999854
Q ss_pred CCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCccc
Q 011351 279 SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 355 (488)
Q Consensus 279 ~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~ 355 (488)
++.+ .+.++++ ++++|.|++|+|.+|++++ ++++++..+ +|+|.||+++||++|||||+|||+..+.
T Consensus 229 -~~~v-~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~------- 298 (441)
T PRK08010 229 -ENQV-QVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQ------- 298 (441)
T ss_pred -CCEE-EEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc-------
Confidence 3333 3555555 5999999999999999876 467788765 5789999999999999999999998543
Q ss_pred ccccHHHHHHHHHHHHHHHhcCCCC---CCCCCCceeEeccccCCCCcceeeEEeeCCCC-------c--EEEE--c---
Q 011351 356 RVEHVDHARQSAQHCIKALLSAQTH---TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------E--TIEI--G--- 418 (488)
Q Consensus 356 ~~~~~~~A~~~g~~~a~~i~~~~~~---~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~--~~~~--~--- 418 (488)
....|..+|+.++.+|++.... .+..+|. ...++.+ +..+|.... + .... .
T Consensus 299 ---~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~--~~~~~p~-------ia~vGlte~~a~~~g~~~~~~~~~~~~~~ 366 (441)
T PRK08010 299 ---FTYISLDDYRIVRDELLGEGKRSTDDRKNVPY--SVFMTPP-------LSRVGMTEEQARESGADIQVVTLPVAAIP 366 (441)
T ss_pred ---chhHHHHHHHHHHHHHcCCCCcccCccCCCCE--EEECCCC-------ceeeeCCHHHHHHcCCCeEEEEEecCcCh
Confidence 2234788899999999864221 2334564 2222322 223343321 0 0000 0
Q ss_pred -----cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHHHH-HHhcCCCCCh--hhhcCCCcHHHHHHHHHc
Q 011351 419 -----NFDPKIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDK--AKLQQASSVEEALEIARA 480 (488)
Q Consensus 419 -----~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 480 (488)
.-...+.++.++ +++|+|+++++.++.++..... +|+++.+++. ..++.|||++|.+..++.
T Consensus 367 ~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 438 (441)
T PRK08010 367 RARVMNDTRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFS 438 (441)
T ss_pred hhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccccCCchHHHHHHHHH
Confidence 001346777764 6999999998888777665544 5788888762 445889999999988864
No 21
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.2e-40 Score=339.26 Aligned_cols=403 Identities=20% Similarity=0.259 Sum_probs=268.0
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCCccccCCCC-----C--CCCCCCCccccc
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYLFPLD-----K--KPARLPGFHTCV 118 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~-~~l~~~~~~~~~-----~--~~~~~~~~~~~~ 118 (488)
+++||+||||||||++||..+++.|. +|+|||+....... + +--++.++.... . ...++ +.....
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~---~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~-gi~~~~ 77 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGL---KVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHL-GIEVKP 77 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhc-CccccC
Confidence 35899999999999999999999987 89999974322211 0 000111110000 0 00000 000000
Q ss_pred CCCCC--------------CCCHhHHHHCCCeEEeCCcEEEEeCCCc-EEEeCCCc--EEEeccEEeccCCCCCcCCCCC
Q 011351 119 GSGGE--------------RQTPEWYKEKGIEMIYQDPVTSIDIEKQ-TLITNSGK--LLKYGSLIVATGCTASRFPEKI 181 (488)
Q Consensus 119 ~~~~~--------------~~~~~~~~~~~i~~~~~~~v~~id~~~~-~v~~~~g~--~i~yd~lVlAtG~~~~~~~~~~ 181 (488)
...+. .....+++..+++++.+. . .++.+.+ .|...+|+ ++.||+||||||++|.. ++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a-~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~---ip 152 (466)
T PRK06115 78 TLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGW-G-RLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTP---LP 152 (466)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-E-EEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCC---CC
Confidence 00000 011223455678888753 3 4444332 34445653 69999999999998753 33
Q ss_pred CCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHH
Q 011351 182 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 261 (488)
Q Consensus 182 g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~ 261 (488)
+...++...+. ++........+++++|||+|.+|+|+|..+.++|.+|+++++.+++++. +++++.+.+.+.|++
T Consensus 153 g~~~~~~~~~~----~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-~d~~~~~~l~~~l~~ 227 (466)
T PRK06115 153 GVTIDNQRIID----STGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-TDTETAKTLQKALTK 227 (466)
T ss_pred CCCCCCCeEEC----HHHHhCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-CCHHHHHHHHHHHHh
Confidence 43344443332 2233332346799999999999999999999999999999999999985 789999999999999
Q ss_pred cCcEEEcCCeEEEEEeCCCCcEEEEEe-C--CCcEEEcCEEEEeecCccCChh--hhhcCCcccCCCEEeCCCCCCCCCC
Q 011351 262 NGVKFVKGASIKNLEAGSDGRVAAVKL-E--DGSTIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMPG 336 (488)
Q Consensus 262 ~GV~v~~~~~v~~i~~~~~~~v~~v~l-~--~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~~~~ 336 (488)
.||++++++++++++..+++....+.. . +++++++|.|++++|++|+++. ++..++..+++++.||++++|+.|+
T Consensus 228 ~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~~~~Ts~~~ 307 (466)
T PRK06115 228 QGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHRTSVPG 307 (466)
T ss_pred cCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECCCeecCCCC
Confidence 999999999999998543332112221 1 2357999999999999999885 4567777765678899999999999
Q ss_pred EEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeEeccccCCCCcceeeEEeeCCCC---
Q 011351 337 IFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--- 412 (488)
Q Consensus 337 Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~--- 412 (488)
|||+|||+..+. ....|.+||+.+|+||++... ..+..+|... |..+- +..+|....
T Consensus 308 IyA~GD~~~~~~----------la~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~---~t~p~------ia~vGlte~~a~ 368 (466)
T PRK06115 308 VWVIGDVTSGPM----------LAHKAEDEAVACIERIAGKAGEVNYGLIPGVI---YTRPE------VATVGKTEEQLK 368 (466)
T ss_pred EEEeeecCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE---ECCcc------cEEeeCCHHHHH
Confidence 999999997532 445699999999999997432 2345566532 22211 223343221
Q ss_pred ----cEEE-E---c--------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcH
Q 011351 413 ----ETIE-I---G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSV 471 (488)
Q Consensus 413 ----~~~~-~---~--------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~ 471 (488)
+... . . .-...+.++.++ +++|+|+++++.++.++... ..+|+.+.+++ . ...+.|||+
T Consensus 369 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~~~hPt~ 448 (466)
T PRK06115 369 AEGRAYKVGKFPFTANSRAKINHETEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTR 448 (466)
T ss_pred HCCCCEEEEEEecccChhhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCccCCCCh
Confidence 0100 0 0 012357777764 58999999888877776654 45578888876 3 335789999
Q ss_pred HHHHHHHHccCCcc
Q 011351 472 EEALEIARAALPVE 485 (488)
Q Consensus 472 ~~~~~~~~~~~~~~ 485 (488)
+|.+..+++.+...
T Consensus 449 ~e~~~~a~~~~~~~ 462 (466)
T PRK06115 449 SEALRQAAMNVEGW 462 (466)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999876554
No 22
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=2.5e-40 Score=338.27 Aligned_cols=401 Identities=20% Similarity=0.276 Sum_probs=269.8
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCCccccC------------CC----CCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYLF------------PL----DKKPA 109 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~-~~l~~~~~~------------~~----~~~~~ 109 (488)
..+||+|||||+||++||..|++.|. +|+|||++.. ... + +--++.++. .. .....
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~---~v~lie~~~~-GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 78 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGL---KTALVEKGKL-GGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPAL 78 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCC---eEEEEEccCC-CcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCcc
Confidence 46899999999999999999999987 8999998632 111 0 000111000 00 00000
Q ss_pred CCCCcccc---cCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCC-------CcEEEeCCC--cEEEeccEEeccCCCCCcC
Q 011351 110 RLPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE-------KQTLITNSG--KLLKYGSLIVATGCTASRF 177 (488)
Q Consensus 110 ~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~-------~~~v~~~~g--~~i~yd~lVlAtG~~~~~~ 177 (488)
++...... .-........+.+++.+++++.+ +++.+|+. ...|.+.+| +++.||+||||||+.|..+
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~ 157 (472)
T PRK05976 79 DFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVEL 157 (472)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCC
Confidence 00000000 00000001123456679999986 77788877 556666676 4799999999999988643
Q ss_pred CCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHH
Q 011351 178 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQ 257 (488)
Q Consensus 178 ~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~ 257 (488)
|. ....+.+.+ +..+. ......+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+
T Consensus 158 p~---~~~~~~~~~-~~~~~---~~~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-~~~~~~~~l~~ 229 (472)
T PRK05976 158 PG---LPFDGEYVI-SSDEA---LSLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-EDAELSKEVAR 229 (472)
T ss_pred CC---CCCCCceEE-cchHh---hCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-CCHHHHHHHHH
Confidence 32 222332222 22222 222234789999999999999999999999999999999999885 68899999999
Q ss_pred HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc--EEEcCEEEEeecCccCChh--hhhcCCcccCCCEEeCCCCCCC
Q 011351 258 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTR 333 (488)
Q Consensus 258 ~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~--~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~ 333 (488)
.|++.||++++++++++++..+++.+..+.+.+|+ ++++|.|++++|.+|+++. ++..++..++|++.||++++|+
T Consensus 230 ~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~~l~ts 309 (472)
T PRK05976 230 LLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDFCQTK 309 (472)
T ss_pred HHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECCCcccC
Confidence 99999999999999999974212334344555663 6999999999999999875 4566666667889999999999
Q ss_pred CCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCC--CCCceeEeccccCCCCcceeeEEeeCCC
Q 011351 334 MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYD--YLPYFYSRVFEYEGSPRKVWWQFFGDNV 411 (488)
Q Consensus 334 ~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~~--~~p~~~~~~~~~~g~~~~~~~~~~g~~~ 411 (488)
.|+|||+|||+..+. .+..|..+|+.+|.+|.+.....++ ..|. ...++.. +..+|...
T Consensus 310 ~~~IyAiGD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~p~-------~a~vG~te 370 (472)
T PRK05976 310 ERHIYAIGDVIGEPQ----------LAHVAMAEGEMAAEHIAGKKPRPFDYAAIPA--CCYTDPE-------VASVGLTE 370 (472)
T ss_pred CCCEEEeeecCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCCE--EEECcCc-------eEEEeCCH
Confidence 999999999986422 4556999999999999875423333 3443 2222221 22333321
Q ss_pred C-------cEEE--E----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcC
Q 011351 412 G-------ETIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQ 467 (488)
Q Consensus 412 ~-------~~~~--~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~ 467 (488)
. ++.. . ......+.++.++ +++|+|+++++.++.++... ..+|+++.+++ . ..++.
T Consensus 371 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~ 450 (472)
T PRK05976 371 EEAKEAGYDVKVGKFPFAANGKALTYGESDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHP 450 (472)
T ss_pred HHHHHcCCCEEEEEEECCcchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccc
Confidence 1 0000 0 0112346777664 58999999888877776544 55678888886 3 33578
Q ss_pred CCcHHHHHHHHHccC
Q 011351 468 ASSVEEALEIARAAL 482 (488)
Q Consensus 468 ~~~~~~~~~~~~~~~ 482 (488)
|||+.|.++.+++.+
T Consensus 451 hPt~~e~~~~~~~~~ 465 (472)
T PRK05976 451 HPTLSEAIQEAALAA 465 (472)
T ss_pred CCChHHHHHHHHHHh
Confidence 999999999998754
No 23
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=2.7e-40 Score=337.66 Aligned_cols=396 Identities=21% Similarity=0.265 Sum_probs=270.1
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCCcccc---------CCC------CCCCCCCC
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYL---------FPL------DKKPARLP 112 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~-~~l~~~~~---------~~~------~~~~~~~~ 112 (488)
+||+||||||||++||..+++.|. +|+|||+++. ... + +--++.++ ... .....++.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~---~v~lie~~~~-GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~ 76 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGA---SVAMVERGPL-GGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFG 76 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCcc-cCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHH
Confidence 589999999999999999999987 8999998752 111 0 00000000 000 00000000
Q ss_pred Ccc----cccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCc-EEEeccEEeccCCCCCcCCCCCCCCCCc
Q 011351 113 GFH----TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTASRFPEKIGGYLPG 187 (488)
Q Consensus 113 ~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~-~i~yd~lVlAtG~~~~~~~~~~g~~~~g 187 (488)
... ..............+++.+++++.+ ++..+ +.++|.+.+++ .+.||+||||||+.|. .|+++|.+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~~--~~~~v~v~~g~~~~~~~~lIiATGs~p~-~p~i~G~~~~~ 152 (463)
T TIGR02053 77 ELLEGKREVVEELRHEKYEDVLSSYGVDYLRG-RARFK--DPKTVKVDLGREVRGAKRFLIATGARPA-IPPIPGLKEAG 152 (463)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHhCCcEEEEE-EEEEc--cCCEEEEcCCeEEEEeCEEEEcCCCCCC-CCCCCCcccCc
Confidence 000 0000000001234567789999876 44443 45778887754 5899999999999986 45566644444
Q ss_pred EEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEE
Q 011351 188 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267 (488)
Q Consensus 188 v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~ 267 (488)
+.+. +.+......+++++|||+|.+|+|+|..|.++|.+|+++++.+++++. +++++...+++.+++.||+++
T Consensus 153 ~~~~------~~~~~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~ 225 (463)
T TIGR02053 153 YLTS------EEALALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-EEPEISAAVEEALAEEGIEVV 225 (463)
T ss_pred eECc------hhhhCcccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-cCHHHHHHHHHHHHHcCCEEE
Confidence 3322 222222234689999999999999999999999999999999999985 789999999999999999999
Q ss_pred cCCeEEEEEeCCCCcEEEEEeC---CCcEEEcCEEEEeecCccCCh-h-hhhcCCccc-CCCEEeCCCCCCCCCCEEEEc
Q 011351 268 KGASIKNLEAGSDGRVAAVKLE---DGSTIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFAIG 341 (488)
Q Consensus 268 ~~~~v~~i~~~~~~~v~~v~l~---~g~~i~~D~vi~a~G~~p~~~-~-~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~G 341 (488)
++++|++++.++++ ..+.+. +++++++|.|++|+|.+|+++ + ++..+++.+ +|+|.||+++||+.|||||+|
T Consensus 226 ~~~~V~~i~~~~~~--~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiG 303 (463)
T TIGR02053 226 TSAQVKAVSVRGGG--KIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAG 303 (463)
T ss_pred cCcEEEEEEEcCCE--EEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEEEee
Confidence 99999999854332 233332 235799999999999999988 4 677788765 577999999999999999999
Q ss_pred eecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeEeccccCCCCcceeeEEeeCCCC-------
Q 011351 342 DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------- 412 (488)
Q Consensus 342 D~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~------- 412 (488)
||+..+. .+..|..||+.+|.||++..... +..+|+ ...++.+ +..+|....
T Consensus 304 D~~~~~~----------~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~--~~~~~p~-------~a~vGlte~~a~~~g~ 364 (463)
T TIGR02053 304 DVTGGLQ----------LEYVAAKEGVVAAENALGGANAKLDLLVIPR--VVFTDPA-------VASVGLTEAEAQKAGI 364 (463)
T ss_pred ecCCCcc----------cHhHHHHHHHHHHHHhcCCCCCccCcCCCCe--EEeccCc-------eEEEeCCHHHHHhcCC
Confidence 9997532 45569999999999998742322 334553 2222221 333443321
Q ss_pred cE--EEE--c--------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHHHHH
Q 011351 413 ET--IEI--G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEAL 475 (488)
Q Consensus 413 ~~--~~~--~--------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~ 475 (488)
+. ... . .....+.++.++ +++|+|+++++.++.++... ..+|+++.+++ . .....|||+.|.+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~pt~~e~~ 444 (463)
T TIGR02053 365 ECDCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAEGL 444 (463)
T ss_pred CeEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHH
Confidence 00 000 0 112347777764 59999999988888776655 44578888776 3 3346799999999
Q ss_pred HHHHccCC
Q 011351 476 EIARAALP 483 (488)
Q Consensus 476 ~~~~~~~~ 483 (488)
..+++.+.
T Consensus 445 ~~a~~~~~ 452 (463)
T TIGR02053 445 KLAAQTFY 452 (463)
T ss_pred HHHHHHhh
Confidence 99988754
No 24
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=1.5e-40 Score=338.59 Aligned_cols=400 Identities=20% Similarity=0.286 Sum_probs=272.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC---CCCCCCCccccCCC--------------C-----CCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP---YERPALTKGYLFPL--------------D-----KKP 108 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~---~~~~~l~~~~~~~~--------------~-----~~~ 108 (488)
+++++|||||++|+.||..+++.|. +|+|||++..-. ...+.-+|.++... . ...
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~---~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 77 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGA---DVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEAR 77 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC---eEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccc
Confidence 4689999999999999999999987 899999875211 00011111111000 0 000
Q ss_pred CCCCCcccc---cCCCCCCCCHhHHHHCCCeEEeCCcEEEEe----CCCcEEEeCCCc--EEEeccEEeccCCCCCcCCC
Q 011351 109 ARLPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSID----IEKQTLITNSGK--LLKYGSLIVATGCTASRFPE 179 (488)
Q Consensus 109 ~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~id----~~~~~v~~~~g~--~i~yd~lVlAtG~~~~~~~~ 179 (488)
.++...... ..........+.+++.+++++.+ ++..++ .....|.+.+|+ ++.||+||||||+.|..+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p- 155 (466)
T PRK07845 78 VDLPAVNARVKALAAAQSADIRARLEREGVRVIAG-RGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILP- 155 (466)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCC-
Confidence 000000000 00000012234566789999986 566533 333345555665 6999999999999986433
Q ss_pred CCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHH
Q 011351 180 KIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY 259 (488)
Q Consensus 180 ~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l 259 (488)
.++.+.+.+++..++.+. ...+++++|||+|.+|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.|
T Consensus 156 ~~~~~~~~v~~~~~~~~~------~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~L 228 (466)
T PRK07845 156 TAEPDGERILTWRQLYDL------DELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG-EDADAAEVLEEVF 228 (466)
T ss_pred CCCCCCceEEeehhhhcc------cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-CCHHHHHHHHHHH
Confidence 222223445554433322 234689999999999999999999999999999999999986 6899999999999
Q ss_pred HHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCC
Q 011351 260 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPG 336 (488)
Q Consensus 260 ~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~ 336 (488)
+++||++++++++++++..+ +.+ .+.+.+|+++++|.|++++|++|++++ +++++++.+ +|+|.||++++|+.||
T Consensus 229 ~~~gV~i~~~~~v~~v~~~~-~~~-~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~~ 306 (466)
T PRK07845 229 ARRGMTVLKRSRAESVERTG-DGV-VVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTSVPG 306 (466)
T ss_pred HHCCcEEEcCCEEEEEEEeC-CEE-EEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccCCCC
Confidence 99999999999999997543 333 466778889999999999999999885 678888865 5779999999999999
Q ss_pred EEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeEeccccCCCCcceeeEEeeCCCC--
Q 011351 337 IFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-- 412 (488)
Q Consensus 337 Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-- 412 (488)
|||+|||+..+. .+..|..||+.++.++++.... .+..+|. ..|..+- +..+|....
T Consensus 307 IyA~GD~~~~~~----------l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~---~vf~~p~------~a~vGlte~~a 367 (466)
T PRK07845 307 IYAAGDCTGVLP----------LASVAAMQGRIAMYHALGEAVSPLRLKTVAS---NVFTRPE------IATVGVSQAAI 367 (466)
T ss_pred EEEEeeccCCcc----------chhHHHHHHHHHHHHHcCCCCCcCCCCCCCE---EEeCCCc------ceeecCCHHHH
Confidence 999999997532 4567999999999999974322 2334553 2332110 222332210
Q ss_pred -----c--EEE--E--------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCc
Q 011351 413 -----E--TIE--I--------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASS 470 (488)
Q Consensus 413 -----~--~~~--~--------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~ 470 (488)
+ ... . .+....+.++.++ +++|+|+++++.++.++... ..+|+++.+++ . ...+.|||
T Consensus 368 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt 447 (466)
T PRK07845 368 DSGEVPARTVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPS 447 (466)
T ss_pred HhCCCceEEEEEecccCchhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCCCC
Confidence 0 000 0 0112357777764 59999999888887776655 44578888886 3 34578999
Q ss_pred HHHHHHHHHccCC
Q 011351 471 VEEALEIARAALP 483 (488)
Q Consensus 471 ~~~~~~~~~~~~~ 483 (488)
+.|++..+++.+.
T Consensus 448 ~~e~~~~~~~~~~ 460 (466)
T PRK07845 448 LSGSITEAARRLM 460 (466)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887644
No 25
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=8.4e-40 Score=335.20 Aligned_cols=408 Identities=16% Similarity=0.222 Sum_probs=267.5
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCCccccCCCCC--------------C-CC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYLFPLDK--------------K-PA 109 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~-~~l~~~~~~~~~~--------------~-~~ 109 (488)
..++||+|||||+||++||..+++.|. +|+|||++.. ... + +--+|.++..... . ..
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~---~ValIEk~~~-GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~ 121 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKA---KVALVEKDYL-GGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSF 121 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCC---eEEEEecccc-cccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCcc
Confidence 456899999999999999999999987 8999998742 111 0 1111211110000 0 00
Q ss_pred CCCCcccccC---CCCCCCCHhHHHHCCCeEEeCCcEEEEeC--------------------CCcEE------EeCCCcE
Q 011351 110 RLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDI--------------------EKQTL------ITNSGKL 160 (488)
Q Consensus 110 ~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~v~~id~--------------------~~~~v------~~~~g~~ 160 (488)
+++....... ........+.+++.+++++.+.. .-+++ +..+| ..++|++
T Consensus 122 d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a-~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 200 (561)
T PTZ00058 122 NLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKG-SLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQV 200 (561)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEE-EEecCCEEEeeccccccccccccccccceeeeccceecCCCcE
Confidence 0000000000 00001122345667999987642 11111 01112 2346778
Q ss_pred EEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 011351 161 LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (488)
Q Consensus 161 i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~ 240 (488)
+.||+||||||+.|. .|+++|.+ .+ + + ++.+.+. ..+++++|||+|.+|+|+|..|..+|.+|+++++.+
T Consensus 201 i~ad~lVIATGS~P~-~P~IpG~~--~v--~-t---s~~~~~l-~~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~ 270 (561)
T PTZ00058 201 IEGKNILIAVGNKPI-FPDVKGKE--FT--I-S---SDDFFKI-KEAKRIGIAGSGYIAVELINVVNRLGAESYIFARGN 270 (561)
T ss_pred EECCEEEEecCCCCC-CCCCCCce--eE--E-E---HHHHhhc-cCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc
Confidence 999999999999986 45555421 11 1 1 2333332 348999999999999999999999999999999999
Q ss_pred cCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC-CcEEEcCEEEEeecCccCChhhh--hcCC
Q 011351 241 HLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GSTIDADTIVIGIGAKPTVSPFE--RVGL 317 (488)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~-g~~i~~D~vi~a~G~~p~~~~~~--~~gl 317 (488)
++++ .+++++.+.+.+.|++.||++++++.+.+++..+++.+ .+.+.+ ++++++|.|++++|++|+++++. ..++
T Consensus 271 ~il~-~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v-~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~ 348 (561)
T PTZ00058 271 RLLR-KFDETIINELENDMKKNNINIITHANVEEIEKVKEKNL-TIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNI 348 (561)
T ss_pred cccc-cCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcE-EEEECCCCEEEECCEEEECcCCCCCccccCccccce
Confidence 9987 47999999999999999999999999999986433333 234434 45799999999999999988763 3444
Q ss_pred cccCCCEEeCCCCCCCCCCEEEEceecccCCc-----------------------cCCccc-ccccHHHHHHHHHHHHHH
Q 011351 318 NSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK-----------------------MYDRTA-RVEHVDHARQSAQHCIKA 373 (488)
Q Consensus 318 ~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~-----------------------~~~~~~-~~~~~~~A~~~g~~~a~~ 373 (488)
..++|+|.||+++||+.|||||+|||+..+.. ..+... .......|..+|+.+|.|
T Consensus 349 ~~~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~n 428 (561)
T PTZ00058 349 KTPKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADR 428 (561)
T ss_pred ecCCCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHH
Confidence 45578899999999999999999999983321 111111 234667799999999999
Q ss_pred HhcCCC--CCCCCCCceeEeccccCCCCcceeeEEeeCCCC---------cEEE----------------EccCCCcEEE
Q 011351 374 LLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG---------ETIE----------------IGNFDPKIAT 426 (488)
Q Consensus 374 i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~---------~~~~----------------~~~~~~~~~~ 426 (488)
|++... ..+..+|.. .|..+- +..+|.... .... .+.....+.+
T Consensus 429 i~g~~~~~~~~~~ip~~---vft~pe------iA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~K 499 (561)
T PTZ00058 429 LFGPFSRTTNYKLIPSV---IFSHPP------IGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLK 499 (561)
T ss_pred HhCCCCcccCCCCCCeE---EeCCch------heeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEE
Confidence 997422 234456643 333211 112222110 0000 0011234677
Q ss_pred EEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHHHHHHHHHccC
Q 011351 427 FWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALEIARAAL 482 (488)
Q Consensus 427 ~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 482 (488)
++++ +++|+|+++++.++.++... ..+|+++.+++ . ..++.|||++|++..++.+|
T Consensus 500 li~~~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~e~~~~~~~~~ 560 (561)
T PTZ00058 500 LVCVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEEFVTMAPWM 560 (561)
T ss_pred EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChHHHHHHhccCC
Confidence 7664 69999999988887776655 55678888886 2 44588999999999988765
No 26
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.2e-40 Score=337.00 Aligned_cols=399 Identities=23% Similarity=0.296 Sum_probs=261.3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCC-CCCCccccCCCC-----CCCCCCCCcccccCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YER-PALTKGYLFPLD-----KKPARLPGFHTCVGSG 121 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~-~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~ 121 (488)
.++||+|||||+||++||..|++.|. +|+|||++..-. ..+ +--++.++.... .......+........
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~---~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~ 79 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGL---KTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFD 79 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccC
Confidence 35899999999999999999999987 899999863211 000 000111110000 0000000000000000
Q ss_pred C--------------CCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEE--eCCC--cEEEeccEEeccCCCCCcCCCCCCC
Q 011351 122 G--------------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLI--TNSG--KLLKYGSLIVATGCTASRFPEKIGG 183 (488)
Q Consensus 122 ~--------------~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~--~~~g--~~i~yd~lVlAtG~~~~~~~~~~g~ 183 (488)
+ .......++..+++.+.+ +..-+ +.+++. ..+| +++.||+||||||+.|..+ |+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g-~~~~~--~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~---pg~ 153 (466)
T PRK07818 80 YGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHG-YGTFT--DANTLEVDLNDGGTETVTFDNAIIATGSSTRLL---PGT 153 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEc--CCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCC---CCC
Confidence 0 000011122346666543 22222 334443 3444 3689999999999998643 332
Q ss_pred CC-CcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHc
Q 011351 184 YL-PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 262 (488)
Q Consensus 184 ~~-~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~ 262 (488)
+. ..+.+.. + .+ .....+++++|||+|.+|+|+|..|+++|.+|+++++.+++++. +++++.+.+.+.|+++
T Consensus 154 ~~~~~v~~~~---~--~~-~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~ 226 (466)
T PRK07818 154 SLSENVVTYE---E--QI-LSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN-EDAEVSKEIAKQYKKL 226 (466)
T ss_pred CCCCcEEchH---H--Hh-ccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc-cCHHHHHHHHHHHHHC
Confidence 22 2233221 1 11 11235789999999999999999999999999999999999985 6899999999999999
Q ss_pred CcEEEcCCeEEEEEeCCCCcEEEEEeC--CC--cEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCC
Q 011351 263 GVKFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMP 335 (488)
Q Consensus 263 GV~v~~~~~v~~i~~~~~~~v~~v~l~--~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~ 335 (488)
||++++++++++++.. ++.+ .+.+. +| +++++|.|++++|++|++++ +++.|+..+ +|+|.||+++||+.|
T Consensus 227 gV~i~~~~~v~~i~~~-~~~~-~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p 304 (466)
T PRK07818 227 GVKILTGTKVESIDDN-GSKV-TVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVP 304 (466)
T ss_pred CCEEEECCEEEEEEEe-CCeE-EEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCC
Confidence 9999999999999853 3322 34443 56 36999999999999999885 578888764 577999999999999
Q ss_pred CEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC---CCCCCCceeEeccccCCCCcceeeEEeeCCCC
Q 011351 336 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH---TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 412 (488)
Q Consensus 336 ~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~---~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~ 412 (488)
+|||+|||+..+. .+..|..||+.+|.||++.... .+..+|.. ..++.+ +.++|....
T Consensus 305 ~IyAiGD~~~~~~----------l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~--~~~~p~-------~a~vGlte~ 365 (466)
T PRK07818 305 HIYAIGDVTAKLQ----------LAHVAEAQGVVAAETIAGAETLELGDYRMMPRA--TFCQPQ-------VASFGLTEE 365 (466)
T ss_pred CEEEEeecCCCcc----------cHhHHHHHHHHHHHHHcCCCCCccCccCCCCeE--EECCCC-------eEEEeCCHH
Confidence 9999999996422 4566999999999999975422 34455642 111211 333443221
Q ss_pred -------cE--EEEc----------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCC
Q 011351 413 -------ET--IEIG----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQA 468 (488)
Q Consensus 413 -------~~--~~~~----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~ 468 (488)
+. .... .-...+.|+.++ +++|+|+++++.++.++... ..+|+.+.+++ . ..++.|
T Consensus 366 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~h 445 (466)
T PRK07818 366 QAREEGYDVKVAKFPFTANGKAHGLGDPTGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHTH 445 (466)
T ss_pred HHHhCCCcEEEEEEECCccchhhhcCCCCeEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCccCC
Confidence 00 0000 112347777764 59999999888877776655 44578888876 2 345889
Q ss_pred CcHHHHHHHHHccCCcc
Q 011351 469 SSVEEALEIARAALPVE 485 (488)
Q Consensus 469 ~~~~~~~~~~~~~~~~~ 485 (488)
||++|+++.+++.+..+
T Consensus 446 Pt~~e~~~~~~~~~~~~ 462 (466)
T PRK07818 446 PTLSEALKEAFHGLAGH 462 (466)
T ss_pred CchHHHHHHHHHHhhcC
Confidence 99999999999876554
No 27
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=8.8e-41 Score=336.49 Aligned_cols=308 Identities=20% Similarity=0.267 Sum_probs=236.8
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (488)
+.+++|||||||+||+.+|..|.+. +.+|||||+++++.|. |.++. +...... .... ......
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~---~~~ItlI~~~~~~~~~-~~l~~-~~~g~~~-~~~~-----------~~~~~~ 70 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPK---KYNITVISPRNHMLFT-PLLPQ-TTTGTLE-FRSI-----------CEPVRP 70 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcC---CCeEEEEcCCCCcchh-hhHHH-hcccCCC-hHHh-----------HHHHHH
Confidence 4567999999999999999999654 3489999999998775 54432 2221111 1110 011234
Q ss_pred HHHHCCCeEEeCCcEEEEeCCCcEEEe----------CCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHH
Q 011351 129 WYKEKGIEMIYQDPVTSIDIEKQTLIT----------NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD 198 (488)
Q Consensus 129 ~~~~~~i~~~~~~~v~~id~~~~~v~~----------~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~ 198 (488)
.+...+++++. .+|++||++++.|++ +++.++.||+||||||+.+. .+.+||.. +..+.++++.++.
T Consensus 71 ~~~~~~~~~i~-~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~-~~~ipG~~-e~~~~~~~~~~a~ 147 (424)
T PTZ00318 71 ALAKLPNRYLR-AVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPN-TFNIPGVE-ERAFFLKEVNHAR 147 (424)
T ss_pred HhccCCeEEEE-EEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccC-CCCCCCHH-HcCCCCCCHHHHH
Confidence 45567888887 599999999999888 46778999999999999986 35556642 3455677777776
Q ss_pred HHHHhhh-----------------cCCeEEEECCCHHHHHHHHHHHh--------------CCCcEEEEecCCcCccccc
Q 011351 199 ALISSLE-----------------KAKKVVVVGGGYIGMEVAAAAVG--------------WKLDTTIIFPENHLLQRLF 247 (488)
Q Consensus 199 ~~~~~~~-----------------~~~~vvVvG~G~~g~e~A~~l~~--------------~g~~v~lv~~~~~~l~~~~ 247 (488)
.+++.+. ..++++|||+|++|+|+|..|.+ .+.+|+++++.+++++ .+
T Consensus 148 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~-~~ 226 (424)
T PTZ00318 148 GIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG-SF 226 (424)
T ss_pred HHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc-cC
Confidence 6554431 12489999999999999999976 3678999999999997 48
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEe
Q 011351 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQV 326 (488)
Q Consensus 248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~v 326 (488)
++.+.+.+++.|++.||+++++++|++++.+ .+.+++|+++++|.+|+++|.+|+ .++++++++.+ +|+|.|
T Consensus 227 ~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~------~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~~l~~~~~G~I~V 299 (424)
T PTZ00318 227 DQALRKYGQRRLRRLGVDIRTKTAVKEVLDK------EVVLKDGEVIPTGLVVWSTGVGPG-PLTKQLKVDKTSRGRISV 299 (424)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC------EEEECCCCEEEccEEEEccCCCCc-chhhhcCCcccCCCcEEe
Confidence 9999999999999999999999999999742 477889999999999999999998 68888888765 689999
Q ss_pred CCCCC-CCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCcee
Q 011351 327 DGQFR-TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFY 389 (488)
Q Consensus 327 d~~~~-t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~~~~p~~~ 389 (488)
|+++| +++|||||+|||+..+.... ...+..|.+||+.+|+||.+.........||.+
T Consensus 300 d~~l~~~~~~~IfAiGD~a~~~~~~~-----~~~~~~A~~qg~~~A~ni~~~l~g~~~~~~~~~ 358 (424)
T PTZ00318 300 DDHLRVKPIPNVFALGDCAANEERPL-----PTLAQVASQQGVYLAKEFNNELKGKPMSKPFVY 358 (424)
T ss_pred CCCcccCCCCCEEEEeccccCCCCCC-----CCchHHHHHHHHHHHHHHHHHhcCCCCCCCCee
Confidence 99999 59999999999998754221 225677999999999999753221113466654
No 28
>PLN02546 glutathione reductase
Probab=100.00 E-value=2.3e-40 Score=339.61 Aligned_cols=393 Identities=20% Similarity=0.256 Sum_probs=270.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC------C-CCCCCCCCC------ccccC--------------
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA------Y-APYERPALT------KGYLF-------------- 102 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~------~-~~~~~~~l~------~~~~~-------------- 102 (488)
.++||+|||||+||+.||..+++.|. +|+|||+.. . ..+.-.-+. |.++.
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~---~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~ 154 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGA---SAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGF 154 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhc
Confidence 35899999999999999999999987 899999521 0 000000000 10000
Q ss_pred CCC---CCCCCCCCcccc---cCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCc
Q 011351 103 PLD---KKPARLPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR 176 (488)
Q Consensus 103 ~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~ 176 (488)
... ....++...... .-..........+++.+++++.+ +++.+++ ++|.+ +|+.+.||+||||||+.+.
T Consensus 155 g~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G-~a~~vd~--~~V~v-~G~~~~~D~LVIATGs~p~- 229 (558)
T PLN02546 155 GWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEG-RGKIVDP--HTVDV-DGKLYTARNILIAVGGRPF- 229 (558)
T ss_pred CcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEccC--CEEEE-CCEEEECCEEEEeCCCCCC-
Confidence 000 000000000000 00000111233455678999985 6666766 45665 5778999999999999986
Q ss_pred CCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHH
Q 011351 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 256 (488)
Q Consensus 177 ~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~ 256 (488)
.|+++| +... .+++.+......+++++|||+|.+|+|+|..|..++.+|+++++.+++++. +++++...+.
T Consensus 230 ~P~IpG-----~~~v---~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~-~d~~~~~~l~ 300 (558)
T PLN02546 230 IPDIPG-----IEHA---IDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG-FDEEVRDFVA 300 (558)
T ss_pred CCCCCC-----hhhc---cCHHHHHhccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-cCHHHHHHHH
Confidence 455444 2222 233444444456899999999999999999999999999999999998874 8999999999
Q ss_pred HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCC
Q 011351 257 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTR 333 (488)
Q Consensus 257 ~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~ 333 (488)
+.|++.||++++++.+++++..+++.+ .+.+.+++...+|.|++++|++|++++ +++++++.+ +|+|.||+++||+
T Consensus 301 ~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts 379 (558)
T PLN02546 301 EQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTS 379 (558)
T ss_pred HHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCceeC
Confidence 999999999999999999975444433 455666655569999999999999985 578888876 5779999999999
Q ss_pred CCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeEeccccCCCCcceeeEEeeCCC
Q 011351 334 MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNV 411 (488)
Q Consensus 334 ~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~ 411 (488)
+|||||+|||+..+. .+..|..+|+.+|.||++... ..+..+|+ ..|.++- +..+|...
T Consensus 380 ~p~IYAaGDv~~~~~----------l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~---~vft~Pe------ia~VGlte 440 (558)
T PLN02546 380 VPSIWAVGDVTDRIN----------LTPVALMEGGALAKTLFGNEPTKPDYRAVPS---AVFSQPP------IGQVGLTE 440 (558)
T ss_pred CCCEEEeeccCCCcc----------cHHHHHHHHHHHHHHHcCCCCCcCCCCCCCE---EEeCCch------HhhccCCH
Confidence 999999999997432 455799999999999997542 23455664 3454421 11222211
Q ss_pred C-------cE------------EEEccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcC
Q 011351 412 G-------ET------------IEIGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQ 467 (488)
Q Consensus 412 ~-------~~------------~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~ 467 (488)
. ++ ...+.....+.++.++ +++|+|+++++.++.++... ..+|+++.+++ . ..++.
T Consensus 441 ~eA~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~ 520 (558)
T PLN02546 441 EQAIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGI 520 (558)
T ss_pred HHHHHcCCCeEEEEEecccchhhhhCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccC
Confidence 1 00 0011112347777764 59999999988888776655 55678888886 2 44588
Q ss_pred CCcHHHHHHHHH
Q 011351 468 ASSVEEALEIAR 479 (488)
Q Consensus 468 ~~~~~~~~~~~~ 479 (488)
|||+.|.+..+.
T Consensus 521 hPT~~E~~~~~~ 532 (558)
T PLN02546 521 HPTAAEEFVTMR 532 (558)
T ss_pred CCChHHHHHHHh
Confidence 999999998876
No 29
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.1e-39 Score=341.21 Aligned_cols=397 Identities=19% Similarity=0.253 Sum_probs=268.2
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCCccccCC------CCCCCCCCCCcccccC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYLFP------LDKKPARLPGFHTCVG 119 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~-~~l~~~~~~~------~~~~~~~~~~~~~~~~ 119 (488)
..+||+|||||+||++||..|++.|. +|+|||++. .... + +--++.++.. ....... .+......
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~---~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~-~g~~~~~~ 171 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGA---RVTLIERGT-IGGTCVNVGCVPSKIMIRAAHIAHLRRESPFD-GGIAATVP 171 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCC---eEEEEecCc-ceeeccccCccccHHHHHHHHHHHHHhccccc-CCccCCCC
Confidence 46899999999999999999999987 899999873 2111 0 0001110000 0000000 01000000
Q ss_pred C-C--------------CC-CCCHhHHHHC-CCeEEeCCcEEEEeCCCcEEEeCCCc--EEEeccEEeccCCCCCcCCCC
Q 011351 120 S-G--------------GE-RQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEK 180 (488)
Q Consensus 120 ~-~--------------~~-~~~~~~~~~~-~i~~~~~~~v~~id~~~~~v~~~~g~--~i~yd~lVlAtG~~~~~~~~~ 180 (488)
. . .. ......+++. +++++.+ ++..++.....|.+.+|+ ++.||+||||||+.|. .|++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~-~p~i 249 (561)
T PRK13748 172 TIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHG-EARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPA-VPPI 249 (561)
T ss_pred ccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCC-CCCC
Confidence 0 0 00 0011223444 7888875 677777766667666663 6999999999999986 4555
Q ss_pred CCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHH
Q 011351 181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 260 (488)
Q Consensus 181 ~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~ 260 (488)
+|.+... .+.. .........+++++|||+|.+|+|+|..|.++|.+|+++++. .+++. +++++.+.+.+.|+
T Consensus 250 ~g~~~~~--~~~~----~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~-~d~~~~~~l~~~l~ 321 (561)
T PRK13748 250 PGLKETP--YWTS----TEALVSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFR-EDPAIGEAVTAAFR 321 (561)
T ss_pred CCCCccc--eEcc----HHHhhcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccc-cCHHHHHHHHHHHH
Confidence 5532211 2211 111222235789999999999999999999999999999985 56654 79999999999999
Q ss_pred HcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCE
Q 011351 261 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGI 337 (488)
Q Consensus 261 ~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~I 337 (488)
+.||++++++.+++++.. ++.+ .+.+.++ ++++|.|++++|++||+++ +++.+++.+ +|+|.||+++||++|||
T Consensus 322 ~~gI~i~~~~~v~~i~~~-~~~~-~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~I 398 (561)
T PRK13748 322 AEGIEVLEHTQASQVAHV-DGEF-VLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHI 398 (561)
T ss_pred HCCCEEEcCCEEEEEEec-CCEE-EEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCCCE
Confidence 999999999999999754 3332 3555555 6999999999999999975 578888875 57799999999999999
Q ss_pred EEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeEeccccCCCCcceeeEEeeCCCC----
Q 011351 338 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG---- 412 (488)
Q Consensus 338 fa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~---- 412 (488)
||+|||+..+. ....|..+|+.+|.||++... .++...|. ...++.+ +..+|....
T Consensus 399 yA~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~p~-------~a~vGlte~~a~~ 459 (561)
T PRK13748 399 YAAGDCTDQPQ----------FVYVAAAAGTRAAINMTGGDAALDLTAMPA--VVFTDPQ-------VATVGYSEAEAHH 459 (561)
T ss_pred EEeeecCCCcc----------chhHHHHHHHHHHHHHcCCCcccCCCCCCe--EEEccCC-------ceeeeCCHHHHHH
Confidence 99999998643 334588899999999986432 22344553 2222221 233343221
Q ss_pred ---cE--EE----------EccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHH
Q 011351 413 ---ET--IE----------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVE 472 (488)
Q Consensus 413 ---~~--~~----------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~ 472 (488)
+. .. .......+.|++++ +++|+|+++++.++.++... ..+|+++.+++ . ..++.|||+.
T Consensus 460 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~ 539 (561)
T PRK13748 460 DGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMV 539 (561)
T ss_pred cCCCeEEEEEecccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcccccCCchH
Confidence 00 00 01112457888775 69999999877777766544 55678888886 2 3357899999
Q ss_pred HHHHHHHccCC
Q 011351 473 EALEIARAALP 483 (488)
Q Consensus 473 ~~~~~~~~~~~ 483 (488)
|++..+++.+.
T Consensus 540 e~~~~~~~~~~ 550 (561)
T PRK13748 540 EGLKLAAQTFN 550 (561)
T ss_pred HHHHHHHHHhh
Confidence 99999987654
No 30
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=1.2e-39 Score=330.54 Aligned_cols=393 Identities=17% Similarity=0.210 Sum_probs=262.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC-CCC---CCCC-CccccCCCCCCCCCCCCcccc---cCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA-PYE---RPAL-TKGYLFPLDKKPARLPGFHTC---VGSG 121 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~-~~~---~~~l-~~~~~~~~~~~~~~~~~~~~~---~~~~ 121 (488)
+++||+|||||+||++||..|++.|. +|+|||+++.. ... +... ++.++.... ...++...... ....
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~---~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~-~~~~~~~~~~~~~~~~~~ 77 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGK---KVALVEESKAMYGGTCINIGCIPTKTLLVAAE-KNLSFEQVMATKNTVTSR 77 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCC---EEEEEecCCcccceeeecCccccchHhhhhhh-cCCCHHHHHHHHHHHHHH
Confidence 36899999999999999999999987 89999998642 111 0001 111111000 00000000000 0000
Q ss_pred CCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCC---CcEEEeccEEeccCCCCCcCCCCCCC-CCCcEEEecCHHHH
Q 011351 122 GERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS---GKLLKYGSLIVATGCTASRFPEKIGG-YLPGVHYIRDVADA 197 (488)
Q Consensus 122 ~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~---g~~i~yd~lVlAtG~~~~~~~~~~g~-~~~gv~~~~~~~~~ 197 (488)
......+.+.+.+++++.+ ++..+ ++++|.+.+ ..++.||+||||||+.+.. |+++|. +.+++++ +
T Consensus 78 ~~~~~~~~~~~~gV~~~~g-~~~~~--~~~~v~v~~~~~~~~~~~d~vViATGs~~~~-p~i~G~~~~~~v~~------~ 147 (438)
T PRK07251 78 LRGKNYAMLAGSGVDLYDA-EAHFV--SNKVIEVQAGDEKIELTAETIVINTGAVSNV-LPIPGLADSKHVYD------S 147 (438)
T ss_pred HHHHHHHHHHhCCCEEEEE-EEEEc--cCCEEEEeeCCCcEEEEcCEEEEeCCCCCCC-CCCCCcCCCCcEEc------h
Confidence 0011224456778998875 34333 456666543 2469999999999999864 555553 2233332 3
Q ss_pred HHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351 198 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (488)
Q Consensus 198 ~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 277 (488)
..+......+++++|||+|.+|+|+|..+++.|.+|+++++.++++++ .++++.+.+.+.+++.||++++++++++++.
T Consensus 148 ~~~~~~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~ 226 (438)
T PRK07251 148 TGIQSLETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR-EEPSVAALAKQYMEEDGITFLLNAHTTEVKN 226 (438)
T ss_pred HHHhcchhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-CCHHHHHHHHHHHHHcCCEEEcCCEEEEEEe
Confidence 333333346789999999999999999999999999999999999886 6888999999999999999999999999985
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcc
Q 011351 278 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT 354 (488)
Q Consensus 278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~ 354 (488)
+ ++.+ .+ ..+|+++++|.|++|+|.+|+.+. ++..++..+ +|++.||+++||+.|||||+|||+..+.
T Consensus 227 ~-~~~v-~v-~~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~~------ 297 (438)
T PRK07251 227 D-GDQV-LV-VTEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVNGGPQ------ 297 (438)
T ss_pred c-CCEE-EE-EECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc------
Confidence 3 3333 23 345678999999999999999875 445666654 5779999999999999999999997533
Q ss_pred cccccHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeEeccccCCCCcceeeEEeeCCCC-------cEE----EEc--
Q 011351 355 ARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETI----EIG-- 418 (488)
Q Consensus 355 ~~~~~~~~A~~~g~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~~~----~~~-- 418 (488)
....|..+++.++.++.+... ..+..+|.. ..++.+ +...|.... +.. ...
T Consensus 298 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~p~-------ia~vGlte~~a~~~g~~~~~~~~~~~~~ 364 (438)
T PRK07251 298 ----FTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTT--MFITPP-------LSQVGLTEKEAKEAGLPYAVKELLVAAM 364 (438)
T ss_pred ----cHhHHHHHHHHHHHHHcCCCCccccccCCCCEE--EECCCc-------eEeeeCCHHHHHhcCCCeEEEEEECCcc
Confidence 223477888999988886432 123345543 222221 223332211 000 000
Q ss_pred ------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHHHHHHHHH
Q 011351 419 ------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALEIAR 479 (488)
Q Consensus 419 ------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 479 (488)
.....+.|++++ +++|+|+++++.++.++... ..+|+++.+++ . ..++.|||++|++..+.
T Consensus 365 ~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 436 (438)
T PRK07251 365 PRAHVNNDLRGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAENLNDLF 436 (438)
T ss_pred hhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHHHHh
Confidence 001336777764 59999999888887776655 44578888876 2 44578999999998763
No 31
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=7.7e-39 Score=324.12 Aligned_cols=394 Identities=19% Similarity=0.250 Sum_probs=265.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCC-CCCCcccc--------------CCC--CCCCCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YER-PALTKGYL--------------FPL--DKKPARL 111 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~-~~l~~~~~--------------~~~--~~~~~~~ 111 (488)
++|++|||||++|.+||.. +.|. +|+|||++..-. -++ +--+|.++ +.. .....++
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~---~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 75 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADK---RIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRW 75 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCC---eEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCH
Confidence 3799999999999998865 4565 899999864211 000 11111100 000 0000000
Q ss_pred CCccccc---CCCCCC-CCHhH-HHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCC
Q 011351 112 PGFHTCV---GSGGER-QTPEW-YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP 186 (488)
Q Consensus 112 ~~~~~~~---~~~~~~-~~~~~-~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~ 186 (488)
....... ...... ....+ ++..+++++.+ +..-+ +.++|++.+|+++.||+||||||+.|. .|++++.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~--~~~~V~v~~g~~~~~d~lViATGs~p~-~p~i~g~~~~ 151 (451)
T PRK07846 76 PDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRG-HARFI--GPKTLRTGDGEEITADQVVIAAGSRPV-IPPVIADSGV 151 (451)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEE-EEEEe--cCCEEEECCCCEEEeCEEEEcCCCCCC-CCCCCCcCCc
Confidence 0000000 000001 12233 56778999886 34333 568898888888999999999999986 4555553322
Q ss_pred cEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEE
Q 011351 187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 266 (488)
Q Consensus 187 gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v 266 (488)
.+ .+..+... ....+++++|||+|.+|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.+ +.||++
T Consensus 152 ~~---~~~~~~~~---l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~l~-~~~v~i 223 (451)
T PRK07846 152 RY---HTSDTIMR---LPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH-LDDDISERFTELA-SKRWDV 223 (451)
T ss_pred cE---EchHHHhh---hhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHH-hcCeEE
Confidence 22 22233322 2235789999999999999999999999999999999999864 7889888887655 568999
Q ss_pred EcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhh--hhcCCccc-CCCEEeCCCCCCCCCCEEEEcee
Q 011351 267 VKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDV 343 (488)
Q Consensus 267 ~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~ 343 (488)
++++++++++.. ++.+ .+.+.+|+++++|.|++|+|++|+++++ ++.+++.+ +|+|.||+++||+.|||||+|||
T Consensus 224 ~~~~~v~~i~~~-~~~v-~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD~ 301 (451)
T PRK07846 224 RLGRNVVGVSQD-GSGV-TLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFALGDV 301 (451)
T ss_pred EeCCEEEEEEEc-CCEE-EEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEEEeec
Confidence 999999999854 3333 4677788899999999999999999884 67888875 67799999999999999999999
Q ss_pred cccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeEeccccCCCCcceeeEEeeCCCC-------c
Q 011351 344 AAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------E 413 (488)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~ 413 (488)
+..+. ....|.+||+.+++||++... ..+..+|... |..+- +..+|.... +
T Consensus 302 ~~~~~----------l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i---f~~p~------ia~vGlte~~a~~~g~~ 362 (451)
T PRK07846 302 SSPYQ----------LKHVANHEARVVQHNLLHPDDLIASDHRFVPAAV---FTHPQ------IASVGLTENEARAAGLD 362 (451)
T ss_pred CCCcc----------ChhHHHHHHHHHHHHHcCCCCccccCCCCCCeEE---ECCCC------cEeEeCCHHHHHhcCCC
Confidence 97532 234588999999999986422 2345566532 22110 223343221 0
Q ss_pred EEE-------Ec-----cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-hhh-h-cCCCcHHHHH
Q 011351 414 TIE-------IG-----NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-KAK-L-QQASSVEEAL 475 (488)
Q Consensus 414 ~~~-------~~-----~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~-~-~~~~~~~~~~ 475 (488)
+.. .. .-...+.++.++ +++|+|+++++.++.++... ..+|+++.+++ ... . ..|||++|++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~ 442 (451)
T PRK07846 363 ITVKVQNYGDVAYGWAMEDTTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPEVV 442 (451)
T ss_pred EEEEEEecCcchhhhhCCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCCccCCcHHHHH
Confidence 000 00 011346777764 59999999888877776655 45578888886 333 3 5899999999
Q ss_pred HHHHccC
Q 011351 476 EIARAAL 482 (488)
Q Consensus 476 ~~~~~~~ 482 (488)
+.+++.+
T Consensus 443 ~~a~~~~ 449 (451)
T PRK07846 443 ENALLGL 449 (451)
T ss_pred HHHHHhc
Confidence 9998754
No 32
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=1.7e-38 Score=321.55 Aligned_cols=371 Identities=21% Similarity=0.311 Sum_probs=274.5
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCC-HhHHHHCCCeEEeCCcE
Q 011351 65 YAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT-PEWYKEKGIEMIYQDPV 143 (488)
Q Consensus 65 ~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~v 143 (488)
+||.+|++.+. +.+|||||+++.+.|....++. +........... .... .+++.+.+++++.+++|
T Consensus 1 saA~~l~~~~~-~~~Vtlid~~~~~~~~~~~l~~-~~~g~~~~~~~~-----------~~~~~~~~~~~~gv~~~~~~~V 67 (427)
T TIGR03385 1 SAASRVRRLDK-ESDIIVFEKTEDVSFANCGLPY-VIGGVIDDRNKL-----------LAYTPEVFIKKRGIDVKTNHEV 67 (427)
T ss_pred CHHHHHHhhCC-CCcEEEEEcCCceeEEcCCCCe-EeccccCCHHHc-----------ccCCHHHHHHhcCCeEEecCEE
Confidence 47899998753 6799999999988776433432 111111100000 1122 34558899999888899
Q ss_pred EEEeCCCcEEEeCC---CcEEE--eccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhh--hcCCeEEEECCC
Q 011351 144 TSIDIEKQTLITNS---GKLLK--YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL--EKAKKVVVVGGG 216 (488)
Q Consensus 144 ~~id~~~~~v~~~~---g~~i~--yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~--~~~~~vvVvG~G 216 (488)
+.+|++++++.+.+ ++.+. ||+||||||+.+. .+.++|.+.++++..++..++..+.+.+ ..+++++|||+|
T Consensus 68 ~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~-~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG 146 (427)
T TIGR03385 68 IEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPI-VPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGG 146 (427)
T ss_pred EEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCCC-CCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCC
Confidence 99999988887753 35677 9999999999986 4566776667788888888887777665 457899999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEc
Q 011351 217 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 296 (488)
Q Consensus 217 ~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~ 296 (488)
.+|+|+|..|++.|.+|+++++.+.++...+++++.+.+.+.+++.||++++++.+++++.+ +.+ +.+.+|+++++
T Consensus 147 ~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~~~--v~~~~g~~i~~ 222 (427)
T TIGR03385 147 YIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGE--ERV--KVFTSGGVYQA 222 (427)
T ss_pred HHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecC--CCE--EEEcCCCEEEe
Confidence 99999999999999999999999888655678899999999999999999999999999743 332 46678889999
Q ss_pred CEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011351 297 DTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 375 (488)
Q Consensus 297 D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~ 375 (488)
|.+++++|.+|+.++++++++..+ +|+|.||++++|+.|+|||+|||+..+....+.......+..|.+||+.+|+||.
T Consensus 223 D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~ 302 (427)
T TIGR03385 223 DMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIA 302 (427)
T ss_pred CEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhc
Confidence 999999999999999999998875 5789999999999999999999998766544433334467789999999999998
Q ss_pred cCCCCCCCCC-CceeEeccccCCCCcceeeEEeeCCCC-------c--EEEEc---------cCCCcEEEEEEE--CCEE
Q 011351 376 SAQTHTYDYL-PYFYSRVFEYEGSPRKVWWQFFGDNVG-------E--TIEIG---------NFDPKIATFWID--SGKL 434 (488)
Q Consensus 376 ~~~~~~~~~~-p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~--~~~~~---------~~~~~~~~~~~~--~~~~ 434 (488)
+. ...+... +..++..+++. +..+|.... + ..... +....+.++.++ +++|
T Consensus 303 g~-~~~~~~~~~~~~~~~~~~~-------~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~i 374 (427)
T TIGR03385 303 GN-DIEFKGVLGTNITKFFDLT-------IASTGVTENEAKKLNIDYKTVFVKAKTHANYYPGNSPLHLKLIYEKDTRRI 374 (427)
T ss_pred CC-CCCCCCcceeeEEEEcCeE-------EEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeE
Confidence 74 3444332 33334444432 445554321 0 11110 011236777774 5999
Q ss_pred EEEEeecCC-hHHhh-HHHHHHhcCCCCC
Q 011351 435 KGVLVESGS-PEEFQ-LLPTLARSQPFVD 461 (488)
Q Consensus 435 ~g~~~~~~~-~~~~~-~~~~~~~~~~~~~ 461 (488)
+|+++++.+ +.++. .+..+|+++.+++
T Consensus 375 lG~~~~g~~~a~e~i~~~~~ai~~~~t~~ 403 (427)
T TIGR03385 375 LGAQAVGKEGADKRIDVLAAAIMAGLTVK 403 (427)
T ss_pred EEEEEEccccHHHHHHHHHHHHHCCCCHH
Confidence 999987777 66655 4455678887776
No 33
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=2.2e-39 Score=329.15 Aligned_cols=393 Identities=19% Similarity=0.256 Sum_probs=263.2
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCC--------CCCCCC---C-CCCCccccCCC-----CCCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKE--------AYAPYE---R-PALTKGYLFPL-----DKKPARL 111 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~lie~~--------~~~~~~---~-~~l~~~~~~~~-----~~~~~~~ 111 (488)
+++||+|||||++|..||..+++. |. +|+|||++ ...... + +--+|.++... ......+
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~---~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~ 78 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKK---RVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGF 78 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCC---EEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhcc
Confidence 468999999999999999999996 66 89999974 111110 0 00011111000 0000000
Q ss_pred CCcc--------cccC---------CCCCCCCHhHHHH-CCCeEEeCCcEEEEeCCCcEEEeCC--------CcEEEecc
Q 011351 112 PGFH--------TCVG---------SGGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQTLITNS--------GKLLKYGS 165 (488)
Q Consensus 112 ~~~~--------~~~~---------~~~~~~~~~~~~~-~~i~~~~~~~v~~id~~~~~v~~~~--------g~~i~yd~ 165 (488)
++. ++.. ........+++++ .+++++.+ +..- .+.++|.+.+ .+.+.||+
T Consensus 79 -gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G-~a~f--~~~~~v~V~~~~~~~~~~~~~~~~d~ 154 (486)
T TIGR01423 79 -GWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLG-WGAL--EDKNVVLVRESADPKSAVKERLQAEH 154 (486)
T ss_pred -CeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEE-EEEE--ccCCEEEEeeccCCCCCcceEEECCE
Confidence 000 0000 0000011123444 38998886 3332 3356665531 24699999
Q ss_pred EEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhC---CCcEEEEecCCcC
Q 011351 166 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHL 242 (488)
Q Consensus 166 lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~---g~~v~lv~~~~~~ 242 (488)
||||||+.|. .|+++|.+ .+ .+..+ .......+++++|||+|.+|+|+|..+..+ |.+|+++++.+++
T Consensus 155 lIIATGs~p~-~p~i~G~~--~~---~~~~~---~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i 225 (486)
T TIGR01423 155 ILLATGSWPQ-MLGIPGIE--HC---ISSNE---AFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI 225 (486)
T ss_pred EEEecCCCCC-CCCCCChh--he---echhh---hhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence 9999999986 45544421 12 22222 222224579999999999999999877655 8999999999999
Q ss_pred cccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc
Q 011351 243 LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS 320 (488)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~ 320 (488)
++. +++++.+.+.+.|++.||++++++.+++++..+++. ..+.+.+|+++++|.|++++|++|++++ +++.+++.+
T Consensus 226 l~~-~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~ 303 (486)
T TIGR01423 226 LRG-FDSTLRKELTKQLRANGINIMTNENPAKVTLNADGS-KHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELT 303 (486)
T ss_pred ccc-cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCce-EEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceEC
Confidence 974 899999999999999999999999999998543332 3567778889999999999999999886 467888775
Q ss_pred -CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeEeccccCC
Q 011351 321 -VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEG 397 (488)
Q Consensus 321 -~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g 397 (488)
+|+|.||+++||+.|||||+|||+..+. ....|..||+.++.||++.... .+..+|. ..|..+-
T Consensus 304 ~~G~I~Vd~~l~Ts~~~IyA~GDv~~~~~----------l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~---~vft~pe 370 (486)
T TIGR01423 304 KKGAIQVDEFSRTNVPNIYAIGDVTDRVM----------LTPVAINEGAAFVDTVFGNKPRKTDHTRVAS---AVFSIPP 370 (486)
T ss_pred CCCCEecCCCCcCCCCCEEEeeecCCCcc----------cHHHHHHHHHHHHHHHhCCCCcccCCCCCCE---EEeCCCc
Confidence 5779999999999999999999997432 3445899999999999975332 3344664 3333211
Q ss_pred CCcceeeEEeeCCCC-------cEE------------EEccC-CCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHH
Q 011351 398 SPRKVWWQFFGDNVG-------ETI------------EIGNF-DPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLA 454 (488)
Q Consensus 398 ~~~~~~~~~~g~~~~-------~~~------------~~~~~-~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~ 454 (488)
+..+|.... .+. ..+.. ...+.++.++ +++|+|+++++.++.++... ..+|
T Consensus 371 ------ia~vGlte~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai 444 (486)
T TIGR01423 371 ------IGTCGLVEEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICL 444 (486)
T ss_pred ------eEEeeCCHHHHHhcCCceEEEEEeeCchhhhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHH
Confidence 222332211 000 00111 1246777764 58999999888887776655 4557
Q ss_pred hcCCCCC-h-hhhcCCCcHHHHHHHHH
Q 011351 455 RSQPFVD-K-AKLQQASSVEEALEIAR 479 (488)
Q Consensus 455 ~~~~~~~-~-~~~~~~~~~~~~~~~~~ 479 (488)
+++.+++ . ..++.|||++|++..+.
T Consensus 445 ~~~~t~~dl~~~~~~hPt~sE~~~~~~ 471 (486)
T TIGR01423 445 KLNAKISDFYNTIGVHPTSAEELCSMR 471 (486)
T ss_pred HcCCCHHHHhhcccCCCCcHHHHHhhc
Confidence 8888886 3 44589999999999885
No 34
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=3.7e-39 Score=329.46 Aligned_cols=399 Identities=18% Similarity=0.199 Sum_probs=263.9
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCCccccC--------CCCC---CCCCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYLF--------PLDK---KPARLPG 113 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~-~~l~~~~~~--------~~~~---~~~~~~~ 113 (488)
+.++|++|||||+||+++|..|++.|. +|+|||+++..... + +--++.++. .... .....+.
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~---~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 90 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGA---RVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPS 90 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCC---eEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCc
Confidence 346899999999999999999999987 89999987432211 0 000110000 0000 0000000
Q ss_pred ccc--cc------CCCCC-CCCHhHHHHC-CCeEEeCCcEEEEeCCCcEEEeCCCc--EEEeccEEeccCCCCCcCCCCC
Q 011351 114 FHT--CV------GSGGE-RQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKI 181 (488)
Q Consensus 114 ~~~--~~------~~~~~-~~~~~~~~~~-~i~~~~~~~v~~id~~~~~v~~~~g~--~i~yd~lVlAtG~~~~~~~~~~ 181 (488)
+.. .. ..... ......++.. +++++.+ .+.-++.....|.+.+|+ ++.||+||||||+.|. .|+++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G-~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~-~p~i~ 168 (479)
T PRK14727 91 IDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKG-YARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPT-IPPIP 168 (479)
T ss_pred cCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCC-CCCCC
Confidence 000 00 00000 0112233333 7888875 444455444455556664 6999999999999986 45555
Q ss_pred CCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHH
Q 011351 182 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 261 (488)
Q Consensus 182 g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~ 261 (488)
|...... ... .+.+ .....+++++|||+|.+|+|+|..|.++|.+|+++++. .+++. +++++.+.+.+.|++
T Consensus 169 G~~~~~~--~~~---~~~l-~~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~~~~l~~~L~~ 240 (479)
T PRK14727 169 GLMDTPY--WTS---TEAL-FSDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFR-EDPLLGETLTACFEK 240 (479)
T ss_pred CcCccce--ecc---hHHh-ccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCc-chHHHHHHHHHHHHh
Confidence 5322111 111 1111 11234689999999999999999999999999999875 66664 789999999999999
Q ss_pred cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEE
Q 011351 262 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIF 338 (488)
Q Consensus 262 ~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~If 338 (488)
.||++++++++++++..++ .+ .+.+.++ ++++|.|++|+|+.||+.+ ++..+++.+ +|+|.||+++||++||||
T Consensus 241 ~GV~i~~~~~V~~i~~~~~-~~-~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~Iy 317 (479)
T PRK14727 241 EGIEVLNNTQASLVEHDDN-GF-VLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIY 317 (479)
T ss_pred CCCEEEcCcEEEEEEEeCC-EE-EEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCCEE
Confidence 9999999999999975433 22 3555555 5999999999999999885 567788765 577999999999999999
Q ss_pred EEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeEeccccCCCCcceeeEEeeCCCCc----
Q 011351 339 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---- 413 (488)
Q Consensus 339 a~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~---- 413 (488)
|+|||+..+. ....|..+|+.+|.||++... .++...|+. ..++.+ +..+|....+
T Consensus 318 A~GD~~~~~~----------~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~--~~~~p~-------ia~vGlte~~a~~~ 378 (479)
T PRK14727 318 AAGDCSDLPQ----------FVYVAAAAGSRAGINMTGGNATLDLSAMPAV--IFTDPQ-------VATVGLSEAKAHLS 378 (479)
T ss_pred EeeecCCcch----------hhhHHHHHHHHHHHHHcCCCcccccccCCcE--EEecCc-------eeeeeCCHHHHHHc
Confidence 9999997643 334588899999999996432 223445542 222221 2333432210
Q ss_pred ---E--EE----------EccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHHH
Q 011351 414 ---T--IE----------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEE 473 (488)
Q Consensus 414 ---~--~~----------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~ 473 (488)
. .. .......+.|++++ +++|+|+++++.++.++... ..+|+.+.+++ . ...+.|||++|
T Consensus 379 g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E 458 (479)
T PRK14727 379 GIETISRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTMVE 458 (479)
T ss_pred CCceEEEEEEcccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCCccCCChHH
Confidence 0 00 01112347777774 59999999888777776655 44578888876 3 33588999999
Q ss_pred HHHHHHccC
Q 011351 474 ALEIARAAL 482 (488)
Q Consensus 474 ~~~~~~~~~ 482 (488)
++..+++.+
T Consensus 459 ~~~~~~~~~ 467 (479)
T PRK14727 459 GLKLCAQTF 467 (479)
T ss_pred HHHHHHHhh
Confidence 999998654
No 35
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=7.7e-39 Score=331.99 Aligned_cols=307 Identities=19% Similarity=0.252 Sum_probs=218.9
Q ss_pred CcEEEe-CCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHh
Q 011351 150 KQTLIT-NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG 228 (488)
Q Consensus 150 ~~~v~~-~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~ 228 (488)
.++|.+ .+++++.||+||||||+.|.. |+.++.+.+++++. .+...+ ...+++++|||+|.+|+|+|..|..
T Consensus 261 ~~~v~v~~~g~~i~ad~lIIATGS~P~~-P~~~~~~~~~V~ts---~d~~~l---~~lpk~VvIVGgG~iGvE~A~~l~~ 333 (659)
T PTZ00153 261 KNTIKSEKSGKEFKVKNIIIATGSTPNI-PDNIEVDQKSVFTS---DTAVKL---EGLQNYMGIVGMGIIGLEFMDIYTA 333 (659)
T ss_pred CCeEEEccCCEEEECCEEEEcCCCCCCC-CCCCCCCCCcEEeh---HHhhhh---hhcCCceEEECCCHHHHHHHHHHHh
Confidence 345544 366789999999999999863 44333333345443 333332 2347899999999999999999999
Q ss_pred CCCcEEEEecCCcCcccccCHHHHHHHHHHH-HHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC-------C--------c
Q 011351 229 WKLDTTIIFPENHLLQRLFTPSLAQRYEQLY-QQNGVKFVKGASIKNLEAGSDGRVAAVKLED-------G--------S 292 (488)
Q Consensus 229 ~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l-~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~-------g--------~ 292 (488)
+|.+|+++++.+++++. +++++.+.+.+.+ ++.||++++++.|++++..+++....+.+.+ + +
T Consensus 334 ~G~eVTLIe~~~~ll~~-~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~ 412 (659)
T PTZ00153 334 LGSEVVSFEYSPQLLPL-LDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIK 412 (659)
T ss_pred CCCeEEEEeccCccccc-CCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccce
Confidence 99999999999999984 8999999988875 6789999999999999864333222343321 1 3
Q ss_pred EEEcCEEEEeecCccCChh--hhhcCCcccCCCEEeCCCCCCC------CCCEEEEceecccCCccCCcccccccHHHHH
Q 011351 293 TIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTR------MPGIFAIGDVAAFPLKMYDRTARVEHVDHAR 364 (488)
Q Consensus 293 ~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~------~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~ 364 (488)
++++|.|++|+|++||++. ++..++..++|+|.||++|||+ +|||||+|||+..+. ....|.
T Consensus 413 ~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~----------La~~A~ 482 (659)
T PTZ00153 413 ETYVDSCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQM----------LAHTAS 482 (659)
T ss_pred EEEcCEEEEEECcccCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCCCcc----------CHHHHH
Confidence 6999999999999999987 4677887777889999999997 699999999986432 345689
Q ss_pred HHHHHHHHHHhcCC------------CC--CCCCCCceeEeccccCCCCcceeeEEeeCCCC------------------
Q 011351 365 QSAQHCIKALLSAQ------------TH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------------------ 412 (488)
Q Consensus 365 ~~g~~~a~~i~~~~------------~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~------------------ 412 (488)
.||+.++++|.+.. .. .|..+|.. ..++.+ +.++|....
T Consensus 483 ~qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~--ift~Pe-------iA~VGlTE~eA~~~g~~~~v~v~~~~~ 553 (659)
T PTZ00153 483 HQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSV--CYTTPE-------LAFIGLTEKEAKELYPPDNVGVEISFY 553 (659)
T ss_pred HHHHHHHHHHcCCCccccccccccccccccccCcCCEE--EECcCc-------eEEeeCCHHHHHhcCCCcceEEEEEEe
Confidence 99999999998742 11 23445541 111110 112222110
Q ss_pred ----cEEEEcc---------------------CCCcEEEEEEE--CCEEEEEEeecCChHHhhHHHH-HHhcCCCCC-h-
Q 011351 413 ----ETIEIGN---------------------FDPKIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVD-K- 462 (488)
Q Consensus 413 ----~~~~~~~---------------------~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~-~- 462 (488)
.....+. ....+.|+.++ +++|+|+++++.++.++.+.-. +|+.+.+++ .
T Consensus 554 ~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~~~~~G~vKli~d~~t~rILGa~ivG~~A~elI~~~a~aI~~~~tv~dl~ 633 (659)
T PTZ00153 554 KANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLA 633 (659)
T ss_pred cccchhhhccccccccccccccccccccccccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence 0000000 02447777763 6999999998888888776655 578888886 2
Q ss_pred hhhcCCCcHHHHHHHHHccCC
Q 011351 463 AKLQQASSVEEALEIARAALP 483 (488)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~ 483 (488)
..++.|||++|.+..+++++.
T Consensus 634 ~~~~~hPT~sE~~~~a~~~~~ 654 (659)
T PTZ00153 634 HMVHSHPTISEVLDAAFKAIA 654 (659)
T ss_pred hCcCCCCChHHHHHHHHHHHH
Confidence 445889999999999998765
No 36
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=4.4e-40 Score=348.64 Aligned_cols=345 Identities=21% Similarity=0.249 Sum_probs=246.1
Q ss_pred cccccccceeeccccCCCCcccceec--cccccccccccccccc---------ccc-CCCCCeEEEEcCchHHHHHHHHH
Q 011351 3 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY---------SSF-ANENREFVIVGGGNAAGYAARTF 70 (488)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------~~~-~~~~~~vvIIGgG~AGl~aA~~L 70 (488)
-.+|||+.+||++|.++|+.+|.|.. .+++++...|+..+.. .|. ..+.++|+|||||+||++||..|
T Consensus 479 ~~~nPlP~icGrVCph~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~tgKkVaIIGgGPAGLsAA~~L 558 (1019)
T PRK09853 479 YQRNALPAITGHICDHQCQYNCTRLDYDEAVNIRELKKVALEKGWDEYKQRWHKPAGIGSRKKVAVIGAGPAGLAAAYFL 558 (1019)
T ss_pred HHhCChhhHhhCcCCchhHHHhcCCCCCCCeeccHHHHHHHhhHHHhcccccCCCCccCCCCcEEEECCCHHHHHHHHHH
Confidence 46899999999999999999999987 8888888887776431 121 24568999999999999999999
Q ss_pred HHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCC
Q 011351 71 VEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK 150 (488)
Q Consensus 71 ~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~ 150 (488)
++.|+ +|+|+|+++..... +. +..+....+.. ......+++.+.|+++++++.+ .++
T Consensus 559 ar~G~---~VtV~Ek~~~~GG~---lr--~~IP~~Rlp~e-----------vL~~die~l~~~GVe~~~gt~V-di~--- 615 (1019)
T PRK09853 559 ARAGH---PVTVFEREENAGGV---VK--NIIPQFRIPAE-----------LIQHDIEFVKAHGVKFEFGCSP-DLT--- 615 (1019)
T ss_pred HHcCC---eEEEEecccccCcc---ee--eecccccccHH-----------HHHHHHHHHHHcCCEEEeCcee-EEE---
Confidence 99987 89999988764211 00 11111111100 0122346777889999998765 232
Q ss_pred cEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEec-CHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhC
Q 011351 151 QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIR-DVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW 229 (488)
Q Consensus 151 ~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~-~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~ 229 (488)
+++.....||+||||||+.+...+.++|.+ +++.... .+.+..........+++|+|||+|.+|+|+|..+.+.
T Consensus 616 ----le~L~~~gYDaVILATGA~~~~~l~IpG~~-~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~Rl 690 (1019)
T PRK09853 616 ----VEQLKNEGYDYVVVAIGADKNGGLKLEGGN-QNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRV 690 (1019)
T ss_pred ----hhhheeccCCEEEECcCCCCCCCCCCCCcc-CCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhc
Confidence 223344579999999999854334445543 3443321 1222212223345689999999999999999998877
Q ss_pred -C-CcEEEEecCCc-CcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcE----------------EEEEeCC
Q 011351 230 -K-LDTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV----------------AAVKLED 290 (488)
Q Consensus 230 -g-~~v~lv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v----------------~~v~l~~ 290 (488)
| .+|+++.|++. .++. . .+.+.+.+ +.||+++++..+.++.. ++++ ..+...+
T Consensus 691 gGakeVTLVyRr~~~~MPA-~----~eEle~Al-eeGVe~~~~~~p~~I~~--dG~l~~~~~~lg~~d~~Gr~~~v~tg~ 762 (1019)
T PRK09853 691 PGVEKVTVVYRRTKQEMPA-W----REEYEEAL-EDGVEFKELLNPESFDA--DGTLTCRVMKLGEPDESGRRRPVETGE 762 (1019)
T ss_pred CCCceEEEEEccCcccccc-c----HHHHHHHH-HcCCEEEeCCceEEEEc--CCcEEEEEEEeecccCCCceEEeeCCC
Confidence 4 48999998763 3432 2 23344443 46999999998888863 2222 1122334
Q ss_pred CcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHH
Q 011351 291 GSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 369 (488)
Q Consensus 291 g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~ 369 (488)
++++++|.||+|+|.+|+.++++..|+..+ +|++.||++++|+.|+|||+|||+..+. .+..|..+|+.
T Consensus 763 ~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a~Gp~----------tvv~Ai~qGr~ 832 (1019)
T PRK09853 763 TVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGPS----------TIVAAIADARR 832 (1019)
T ss_pred eEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCCcccCCCCEEEEeccccCch----------HHHHHHHHHHH
Confidence 467999999999999999999998888765 5789999999999999999999986543 45579999999
Q ss_pred HHHHHhcCCCCCCCCCCceeEecc
Q 011351 370 CIKALLSAQTHTYDYLPYFYSRVF 393 (488)
Q Consensus 370 ~a~~i~~~~~~~~~~~p~~~~~~~ 393 (488)
+|++|++.....+...|++|+..+
T Consensus 833 AA~nI~~~~~~~~~~~~~~~~~~~ 856 (1019)
T PRK09853 833 AADAILSREGIRSHQNDKYWNNVE 856 (1019)
T ss_pred HHHHHhhhcCCCcccccccccccc
Confidence 999999766557777787777644
No 37
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=3.4e-38 Score=321.28 Aligned_cols=394 Identities=20% Similarity=0.237 Sum_probs=260.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC---C---CCCCCCC------CccccCC-----CCCCCCCCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY---A---PYERPAL------TKGYLFP-----LDKKPARLPG 113 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~---~---~~~~~~l------~~~~~~~-----~~~~~~~~~~ 113 (488)
++|++|||||+||+.||..+++.|. +|+|||+... . ...-.-+ +|.++.. .......+ +
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~---~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~-g 77 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGA---KVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNY-G 77 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhc-C
Confidence 4799999999999999999999987 8999997421 0 0100000 1110000 00000000 0
Q ss_pred ccccc--CCC--------------CCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeC--CC--cEEEeccEEeccCCC
Q 011351 114 FHTCV--GSG--------------GERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN--SG--KLLKYGSLIVATGCT 173 (488)
Q Consensus 114 ~~~~~--~~~--------------~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~--~g--~~i~yd~lVlAtG~~ 173 (488)
+.... ..+ .......+++..+++++.+ ...-+++ ++|.+. ++ +.+.||+||||||+.
T Consensus 78 ~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G-~a~f~~~--~~v~v~~~~g~~~~~~~d~lVIATGs~ 154 (484)
T TIGR01438 78 WNVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENA-YAEFVDK--HRIKATNKKGKEKIYSAERFLIATGER 154 (484)
T ss_pred cccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEcCC--CEEEEeccCCCceEEEeCEEEEecCCC
Confidence 00000 000 0011223456679999876 4444444 344442 33 369999999999999
Q ss_pred CCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHH
Q 011351 174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ 253 (488)
Q Consensus 174 ~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~ 253 (488)
|. .|+++|.. + ... +.+.+......+++++|||+|.+|+|+|..|+++|.+|+++.+ +.+++ .+++++.+
T Consensus 155 p~-~p~ipG~~-~---~~~---~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~-~~d~~~~~ 224 (484)
T TIGR01438 155 PR-YPGIPGAK-E---LCI---TSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLR-GFDQDCAN 224 (484)
T ss_pred CC-CCCCCCcc-c---eee---cHHHhhcccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-ccccc-ccCHHHHH
Confidence 86 45555431 1 111 2333333334568999999999999999999999999999987 46775 47999999
Q ss_pred HHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC---cEEEcCEEEEeecCccCChh--hhhcCCccc--CCCEEe
Q 011351 254 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FERVGLNSS--VGGIQV 326 (488)
Q Consensus 254 ~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g---~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~--~g~i~v 326 (488)
.+++.|++.||++++++.+++++..+ +. ..+.+.++ +++++|.|++++|++||+++ +++.++..+ +|+|.|
T Consensus 225 ~l~~~L~~~gV~i~~~~~v~~v~~~~-~~-~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~V 302 (484)
T TIGR01438 225 KVGEHMEEHGVKFKRQFVPIKVEQIE-AK-VKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPA 302 (484)
T ss_pred HHHHHHHHcCCEEEeCceEEEEEEcC-Ce-EEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEec
Confidence 99999999999999999999987543 33 24555555 37999999999999999986 567888765 377999
Q ss_pred CCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeEeccccCCCCcceee
Q 011351 327 DGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWW 404 (488)
Q Consensus 327 d~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~ 404 (488)
|++++|+.|+|||+|||+.... .....|..+|+.+|+||++... ..+..+|.. .|..+- +
T Consensus 303 d~~~~Ts~p~IyA~GDv~~~~~---------~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~---i~~~p~------i 364 (484)
T TIGR01438 303 DEEEQTNVPYIYAVGDILEDKQ---------ELTPVAIQAGRLLAQRLFSGSTVICDYENVPTT---VFTPLE------Y 364 (484)
T ss_pred CCCcccCCCCEEEEEEecCCCc---------cchHHHHHHHHHHHHHHhcCCCcccccccCCeE---EeCCCc------e
Confidence 9999999999999999996321 1345689999999999986442 234556653 222210 2
Q ss_pred EEeeCCCC---------cEE-EEccC-------------CCcEEEEEE-E--CCEEEEEEeecCChHHhhHH-HHHHhcC
Q 011351 405 QFFGDNVG---------ETI-EIGNF-------------DPKIATFWI-D--SGKLKGVLVESGSPEEFQLL-PTLARSQ 457 (488)
Q Consensus 405 ~~~g~~~~---------~~~-~~~~~-------------~~~~~~~~~-~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~ 457 (488)
..+|.... ... ....+ ...+.++.+ + +++|+|+++++.++.++... ..+|+++
T Consensus 365 a~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~ 444 (484)
T TIGR01438 365 GACGLSEEKAVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCG 444 (484)
T ss_pred eeecCCHHHHHHhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcC
Confidence 22332211 000 00000 123666654 2 59999999877777776654 4557888
Q ss_pred CCCC-h-hhhcCCCcHHHHHHHHHcc
Q 011351 458 PFVD-K-AKLQQASSVEEALEIARAA 481 (488)
Q Consensus 458 ~~~~-~-~~~~~~~~~~~~~~~~~~~ 481 (488)
.+++ . ...+.|||++|++..++..
T Consensus 445 ~t~~dl~~~~~~hPt~sE~~~~~~~~ 470 (484)
T TIGR01438 445 LTKKDLDNTIGIHPVCAEVFTTLSVT 470 (484)
T ss_pred CCHHHHhhhhcCCCChHHHHHHhhhh
Confidence 8876 2 3457899999999998755
No 38
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=1.4e-38 Score=325.37 Aligned_cols=401 Identities=20% Similarity=0.284 Sum_probs=268.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-CccccCCCCC-------CCCCC----CCcc
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TKGYLFPLDK-------KPARL----PGFH 115 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~~~l-~~~~~~~~~~-------~~~~~----~~~~ 115 (488)
++||+|||||+||++||.+|++.|. +|+|||++ ..... +... ++.++..... ....+ ..+.
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~---~v~lie~~-~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 76 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGL---KVALVEKE-YLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVD 76 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCC---eEEEEecC-CCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCC
Confidence 3799999999999999999999987 89999983 32111 0000 1111000000 00000 0000
Q ss_pred --cccC------CCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCC-cEEEeccEEeccCCCCCcCCCCCCCCCC
Q 011351 116 --TCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLP 186 (488)
Q Consensus 116 --~~~~------~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g-~~i~yd~lVlAtG~~~~~~~~~~g~~~~ 186 (488)
.... .........++++.+++++.+ ++..+++....+...++ .++.||+||||||+.|..+| .+ ...+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~-~~-~~~~ 153 (461)
T TIGR01350 77 WEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKG-EAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLP-GP-FDFD 153 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCC-CC-CCCC
Confidence 0000 000001123445678998875 55556654444554444 47999999999999886433 32 1122
Q ss_pred cEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEE
Q 011351 187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 266 (488)
Q Consensus 187 gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v 266 (488)
+. .+.+..+. ......+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.||++
T Consensus 154 ~~-~~~~~~~~---~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~gi~i 228 (461)
T TIGR01350 154 GE-VVITSTGA---LNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG-EDAEVSKVVAKALKKKGVKI 228 (461)
T ss_pred Cc-eEEcchHH---hccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC-CCHHHHHHHHHHHHHcCCEE
Confidence 22 22222222 222345789999999999999999999999999999999999874 78899999999999999999
Q ss_pred EcCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeecCccCCh--hhhhcCCccc-CCCEEeCCCCCCCCCCEEEEc
Q 011351 267 VKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIG 341 (488)
Q Consensus 267 ~~~~~v~~i~~~~~~~v~~v~l~~g--~~i~~D~vi~a~G~~p~~~--~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~G 341 (488)
++++++++++.. ++.+ .+.+.+| +++++|.+|+|+|.+|+++ ++++.++..+ +|++.||++++|+.|+|||+|
T Consensus 229 ~~~~~v~~i~~~-~~~v-~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiG 306 (461)
T TIGR01350 229 LTNTKVTAVEKN-DDQV-VYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIG 306 (461)
T ss_pred EeCCEEEEEEEe-CCEE-EEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEee
Confidence 999999999754 3333 3555666 4799999999999999988 5788888876 577999999999999999999
Q ss_pred eecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeEeccccCCCCcceeeEEeeCCCC-------
Q 011351 342 DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------- 412 (488)
Q Consensus 342 D~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~------- 412 (488)
||+..+. ....|..+|+.+|.+|.+..... +...|+. ..++.. +..+|....
T Consensus 307 D~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~--~~~~~~-------~a~vG~~~~~a~~~g~ 367 (461)
T TIGR01350 307 DVIGGPM----------LAHVASHEGIVAAENIAGKEPAPIDYDAVPSC--IYTDPE-------VASVGLTEEQAKEAGY 367 (461)
T ss_pred ecCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCCeE--EecCCc-------eEEEeCCHHHHHhCCC
Confidence 9997432 45679999999999998643312 3344542 222211 222332211
Q ss_pred cE--EEE----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC--hhhhcCCCcHHHHH
Q 011351 413 ET--IEI----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD--KAKLQQASSVEEAL 475 (488)
Q Consensus 413 ~~--~~~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~ 475 (488)
+. ... .+....+.++.++ +++|+|+++++.++.++... ..+|+++.+++ ...+..||+++|++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~ 447 (461)
T TIGR01350 368 DVKIGKFPFAANGKALALGETDGFVKIIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKTIHPHPTLSEAI 447 (461)
T ss_pred CeEEEEEeCccchHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCCHHHHH
Confidence 00 000 0112346777664 59999999888887776655 45678888886 23457899999999
Q ss_pred HHHHccCCc
Q 011351 476 EIARAALPV 484 (488)
Q Consensus 476 ~~~~~~~~~ 484 (488)
+.+++++..
T Consensus 448 ~~~~~~~~~ 456 (461)
T TIGR01350 448 KEAALAALG 456 (461)
T ss_pred HHHHHHhcc
Confidence 999887654
No 39
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.9e-38 Score=323.02 Aligned_cols=397 Identities=18% Similarity=0.222 Sum_probs=264.6
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCC-CCCCccccC--------------CCC----CCCCCC
Q 011351 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YER-PALTKGYLF--------------PLD----KKPARL 111 (488)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~-~~l~~~~~~--------------~~~----~~~~~~ 111 (488)
+|+|||||+||++||..+++.|. +|+|||+++... .++ +--+|.++. ... ....++
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~---~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 78 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGK---NVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDW 78 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC---cEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCH
Confidence 89999999999999999999987 899999875321 000 001111100 000 000000
Q ss_pred CCcccc---cCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCC-cEEEeccEEeccCCCCCcCCCCCCCCCCc
Q 011351 112 PGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLPG 187 (488)
Q Consensus 112 ~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g-~~i~yd~lVlAtG~~~~~~~~~~g~~~~g 187 (488)
...... ............++..+++++.+ ++..++.....|..+++ +++.||+||||||+.|..+| .++.+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p-~~~~~~~~ 156 (458)
T PRK06912 79 KQMQARKSQIVTQLVQGIQYLMKKNKIKVIQG-KASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELP-FAPFDGKW 156 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCC-CCCCCCCe
Confidence 000000 00000001122345568998875 56666655445555555 36999999999999986433 33322233
Q ss_pred EEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEE
Q 011351 188 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267 (488)
Q Consensus 188 v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~ 267 (488)
+.+. .........+++++|||+|++|+|+|..+.++|.+|+++++.+++++. +++++.+.+.+.|++.||+++
T Consensus 157 v~~~------~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-~d~e~~~~l~~~L~~~GI~i~ 229 (458)
T PRK06912 157 IINS------KHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-EDEDIAHILREKLENDGVKIF 229 (458)
T ss_pred EEcc------hHHhCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-ccHHHHHHHHHHHHHCCCEEE
Confidence 3222 222233345789999999999999999999999999999999999885 688999999999999999999
Q ss_pred cCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeecCccCChh--hhhcCCcccCCCEEeCCCCCCCCCCEEEEcee
Q 011351 268 KGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDV 343 (488)
Q Consensus 268 ~~~~v~~i~~~~~~~v~~v~l~~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~ 343 (488)
+++++++++.. +..+ .+.. +| +++++|.|++|+|.+|+.++ ++..++..+++++.||+++||+.|||||+|||
T Consensus 230 ~~~~V~~i~~~-~~~v-~~~~-~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd~~~~ts~~~VyA~GD~ 306 (458)
T PRK06912 230 TGAALKGLNSY-KKQA-LFEY-EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNEHMQTNVPHIYACGDV 306 (458)
T ss_pred ECCEEEEEEEc-CCEE-EEEE-CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCCEEeCCCeecCCCCEEEEeec
Confidence 99999999753 2222 2332 34 36999999999999999875 46778877666799999999999999999999
Q ss_pred cccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC-CCCCCCceeEeccccCCCCcceeeEEeeCCCC-------cEE
Q 011351 344 AAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH-TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETI 415 (488)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~-~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~~~ 415 (488)
+..+. ....|..+|+.+|.++.+.... .+..+|... .++.. +..+|.... +..
T Consensus 307 ~~~~~----------la~~A~~~g~~aa~~~~g~~~~~~~~~~p~~v--~~~p~-------~a~vGlte~~a~~~g~~~~ 367 (458)
T PRK06912 307 IGGIQ----------LAHVAFHEGTTAALHASGEDVKVNYHAVPRCI--YTSPE-------IASVGLTEKQAREQYGDIR 367 (458)
T ss_pred CCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCcCCCCeEE--ecCch-------hEEeeCCHHHHHHCCCCeE
Confidence 96422 4456999999999999864322 244566421 11111 122232211 000
Q ss_pred E-------------EccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC--hhhhcCCCcHHHHHHH
Q 011351 416 E-------------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD--KAKLQQASSVEEALEI 477 (488)
Q Consensus 416 ~-------------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 477 (488)
. .+. ...+.++.++ +++|+|++++++++.++... ..+|+.+.+++ ...++.||+++|++..
T Consensus 368 ~~~~~~~~~~~~~~~~~-~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~ 446 (458)
T PRK06912 368 IGEFPFTANGKALIIGE-QTGKVKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEAIHE 446 (458)
T ss_pred EEEEecCcchhHhhcCC-CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCHHHHHHH
Confidence 0 111 2346777774 58999999888777776554 45678888876 2445889999999999
Q ss_pred HHccCCc
Q 011351 478 ARAALPV 484 (488)
Q Consensus 478 ~~~~~~~ 484 (488)
+++.+..
T Consensus 447 ~~~~~~~ 453 (458)
T PRK06912 447 ALLQAVG 453 (458)
T ss_pred HHHHhhc
Confidence 9876543
No 40
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=1.6e-38 Score=322.13 Aligned_cols=317 Identities=23% Similarity=0.280 Sum_probs=231.9
Q ss_pred CCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEE
Q 011351 133 KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVV 212 (488)
Q Consensus 133 ~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvV 212 (488)
.+++++.+..+.. +.++|.+.+|+++.||+||||||+.|.. |+..+ ..++. +.+..+...+ ...+++++|
T Consensus 105 ~gv~~~~g~~~~~---~~~~V~~~~g~~~~~d~lIiATGs~p~~-p~~~~--~~~~~-~~~~~~~~~l---~~~~k~vvV 174 (452)
T TIGR03452 105 PNIDVYDGHARFV---GPRTLRTGDGEEITGDQIVIAAGSRPYI-PPAIA--DSGVR-YHTNEDIMRL---PELPESLVI 174 (452)
T ss_pred CCeEEEEEEEEEe---cCCEEEECCCcEEEeCEEEEEECCCCCC-CCCCC--CCCCE-EEcHHHHHhh---hhcCCcEEE
Confidence 7899998754432 5678888888889999999999999864 43222 12332 3333444333 235789999
Q ss_pred ECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc
Q 011351 213 VGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 292 (488)
Q Consensus 213 vG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~ 292 (488)
||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.+ +.||++++++++++++..+ +.+ .+.+.+|+
T Consensus 175 IGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~-~~v-~v~~~~g~ 250 (452)
T TIGR03452 175 VGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-LDEDISDRFTEIA-KKKWDIRLGRNVTAVEQDG-DGV-TLTLDDGS 250 (452)
T ss_pred ECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-cCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcC-CeE-EEEEcCCC
Confidence 999999999999999999999999999998874 7889888887755 4689999999999998543 333 46677888
Q ss_pred EEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHH
Q 011351 293 TIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 369 (488)
Q Consensus 293 ~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~ 369 (488)
++++|.|++++|++|++++ +++.|++.+ +|+|.||+++||+.|+|||+|||+..+. ....|..||+.
T Consensus 251 ~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~----------l~~~A~~~g~~ 320 (452)
T TIGR03452 251 TVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSSPYQ----------LKHVANAEARV 320 (452)
T ss_pred EEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCEEEeecccCccc----------ChhHHHHHHHH
Confidence 9999999999999999987 467788875 5779999999999999999999997432 23458899999
Q ss_pred HHHHHhcCCC---CCCCCCCceeEeccccCCCCcceeeEEeeCCCC-------cE--EEE----------ccCCCcEEEE
Q 011351 370 CIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ET--IEI----------GNFDPKIATF 427 (488)
Q Consensus 370 ~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~~--~~~----------~~~~~~~~~~ 427 (488)
+|+||++... ..+..+|.. .|..+- +.++|.... +. ... ......+.|+
T Consensus 321 ~a~ni~~~~~~~~~~~~~~p~~---i~t~p~------ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kl 391 (452)
T TIGR03452 321 VKHNLLHPNDLRKMPHDFVPSA---VFTHPQ------IATVGLTEQEAREAGHDITVKIQNYGDVAYGWAMEDTTGFCKL 391 (452)
T ss_pred HHHHhcCCCCcccCCCCCCCeE---EECCCC------eeeeeCCHHHHHhcCCCeEEEEecCCchhhHhhcCCCCeEEEE
Confidence 9999987432 234456653 221110 223333221 00 000 0112346777
Q ss_pred EEE--CCEEEEEEeecCChHHhhHHH-HHHhcCCCCC-hhh--hcCCCcHHHHHHHHHccC
Q 011351 428 WID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVD-KAK--LQQASSVEEALEIARAAL 482 (488)
Q Consensus 428 ~~~--~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~ 482 (488)
.++ +++|+|+++++.++.++.... .+|+++.+++ ... ...||++.|+++.+++++
T Consensus 392 v~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~~~~ 452 (452)
T TIGR03452 392 IADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEVVENALLGL 452 (452)
T ss_pred EEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCcccCCchHHHHHHHHhcC
Confidence 764 699999998888877766554 4578888886 433 468999999999998864
No 41
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=7.5e-39 Score=327.21 Aligned_cols=396 Identities=20% Similarity=0.286 Sum_probs=262.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC----CCCCccccC--------------CCCCCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER----PALTKGYLF--------------PLDKKPARL 111 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~----~~l~~~~~~--------------~~~~~~~~~ 111 (488)
+++||||||||+||++||..|++.|. +|+|||++. ..... +-.++.++. ........+
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~-~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~ 77 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGK---KVALIEKGP-LGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKI 77 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCc-cccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCcc
Confidence 46899999999999999999999987 899999843 21110 000110000 000000000
Q ss_pred CCccccc------CCCCCCCC-HhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCC
Q 011351 112 PGFHTCV------GSGGERQT-PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY 184 (488)
Q Consensus 112 ~~~~~~~------~~~~~~~~-~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~ 184 (488)
. +.... ........ ...++..+++++.+ .+..++. +++.+ +++++.||+||||||+. .|+++|..
T Consensus 78 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~--~~v~v-~~~~~~~d~lIiATGs~---~p~ipg~~ 149 (460)
T PRK06292 78 D-FKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKG-TARFVDP--NTVEV-NGERIEAKNIVIATGSR---VPPIPGVW 149 (460)
T ss_pred C-HHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEE-EEEEccC--CEEEE-CcEEEEeCEEEEeCCCC---CCCCCCCc
Confidence 0 00000 00000011 12234557777764 4444443 45555 67789999999999998 23334431
Q ss_pred ---CCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHH
Q 011351 185 ---LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 261 (488)
Q Consensus 185 ---~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~ 261 (488)
...+++ .+........+++++|||+|.+|+|+|..|.++|.+|+++++.+++++. +++++.+.+++.|++
T Consensus 150 ~~~~~~~~~------~~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~ 222 (460)
T PRK06292 150 LILGDRLLT------SDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-EDPEVSKQAQKILSK 222 (460)
T ss_pred ccCCCcEEC------chHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-hhHHHHHHHHHHHhh
Confidence 122222 2222222345799999999999999999999999999999999999874 789999999999999
Q ss_pred cCcEEEcCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCC
Q 011351 262 NGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPG 336 (488)
Q Consensus 262 ~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~ 336 (488)
. |++++++++++++..++..+ .+.+.++ +++++|.|++++|.+|++++ ++..++..+ +|.|.||+++||+.||
T Consensus 223 ~-I~i~~~~~v~~i~~~~~~~v-~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~ 300 (460)
T PRK06292 223 E-FKIKLGAKVTSVEKSGDEKV-EELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPG 300 (460)
T ss_pred c-cEEEcCCEEEEEEEcCCceE-EEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCC
Confidence 9 99999999999985432222 2323333 57999999999999999984 677888765 5779999999999999
Q ss_pred EEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeEeccccCCCCcceeeEEeeCCCC--
Q 011351 337 IFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-- 412 (488)
Q Consensus 337 Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-- 412 (488)
|||+|||+..+. ....|..||+.+|.||++.... .+..+|+. .|..+- +..+|....
T Consensus 301 IyA~GD~~~~~~----------~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~~---~~~~~~------~a~vG~te~~a 361 (460)
T PRK06292 301 IYAAGDVNGKPP----------LLHEAADEGRIAAENAAGDVAGGVRYHPIPSV---VFTDPQ------IASVGLTEEEL 361 (460)
T ss_pred EEEEEecCCCcc----------chhHHHHHHHHHHHHhcCCCCCCcCCCCCCeE---EECCCc------cEEeECCHHHH
Confidence 999999997532 3456999999999999874222 23445542 232110 233443221
Q ss_pred -----cE--EEE--c--------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCc
Q 011351 413 -----ET--IEI--G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASS 470 (488)
Q Consensus 413 -----~~--~~~--~--------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~ 470 (488)
+. ... . +....+.++.++ +++|+|+++++.++.++... ..+|+++.+++ . ...+.|||
T Consensus 362 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt 441 (460)
T PRK06292 362 KAAGIDYVVGEVPFEAQGRARVMGKNDGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPT 441 (460)
T ss_pred HhcCCCeEEEEEecccchHHHhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCC
Confidence 00 000 0 112347777764 48999999888877765544 55678888887 2 44588999
Q ss_pred HHHHHHHHHccCCcc
Q 011351 471 VEEALEIARAALPVE 485 (488)
Q Consensus 471 ~~~~~~~~~~~~~~~ 485 (488)
+.|++..+++.+..+
T Consensus 442 ~~e~~~~~~~~~~~~ 456 (460)
T PRK06292 442 LSEGLRTALRDLFSK 456 (460)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999998876543
No 42
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=4.5e-40 Score=332.96 Aligned_cols=332 Identities=21% Similarity=0.217 Sum_probs=241.4
Q ss_pred cccccccceeeccccC--CCCcccceec------cccccccccccccccc---------cccCCCCCeEEEEcCchHHHH
Q 011351 3 SVSNSLSFKHGLSLWC--PQSPSLHRIR------HSSAKNFQRRGFVVAY---------SSFANENREFVIVGGGNAAGY 65 (488)
Q Consensus 3 ~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~~~~---------~~~~~~~~~vvIIGgG~AGl~ 65 (488)
-.+|||+.+||++|.+ +|+.+|.+.. .++.++...|+..+.. .+.....++|+|||||+||++
T Consensus 68 ~~~~p~p~~~grvC~~~~~Ce~~C~~~~~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~G~aGl~ 147 (449)
T TIGR01316 68 KTTSLLPAICGRVCPQERQCEGQCTVGKMFKDVGKPVSIGALERFVADWERQHGIETEPEKAPSTHKKVAVIGAGPAGLA 147 (449)
T ss_pred HHhCChhHHhccCCCCccchHhhCcCCCcCCCCCCCccHHHHHHHHHhHHHhcCCCcCCCCCCCCCCEEEEECcCHHHHH
Confidence 4689999999999998 9999998753 5677777777665321 122345689999999999999
Q ss_pred HHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEE
Q 011351 66 AARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTS 145 (488)
Q Consensus 66 aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 145 (488)
+|..|++.|+ +|+|+|+++..... +. +-.+. .+++ .+......+++++.+++++.++.+
T Consensus 148 aA~~l~~~G~---~V~vie~~~~~GG~---l~--~gip~----~~~~-------~~~~~~~~~~l~~~gv~~~~~~~v-- 206 (449)
T TIGR01316 148 CASELAKAGH---SVTVFEALHKPGGV---VT--YGIPE----FRLP-------KEIVVTEIKTLKKLGVTFRMNFLV-- 206 (449)
T ss_pred HHHHHHHCCC---cEEEEecCCCCCcE---ee--ecCCC----ccCC-------HHHHHHHHHHHHhCCcEEEeCCcc--
Confidence 9999999987 89999997643210 00 00000 0110 000112345677889999987543
Q ss_pred EeCCCcEEEeCCCcEEEeccEEeccCC-CCCcCCCCCCCCCCcEEEecCHHHHHHHHH---------hhhcCCeEEEECC
Q 011351 146 IDIEKQTLITNSGKLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALIS---------SLEKAKKVVVVGG 215 (488)
Q Consensus 146 id~~~~~v~~~~g~~i~yd~lVlAtG~-~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~---------~~~~~~~vvVvG~ 215 (488)
.+.+++++.. ..||+||||||+ .+. .+.++|.+.+++++..++.+...+.. ....+++++|||+
T Consensus 207 ----~~~v~~~~~~-~~yd~viiAtGa~~p~-~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGg 280 (449)
T TIGR01316 207 ----GKTATLEELF-SQYDAVFIGTGAGLPK-LMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGG 280 (449)
T ss_pred ----CCcCCHHHHH-hhCCEEEEeCCCCCCC-cCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECC
Confidence 2344444332 479999999998 454 45677877788877654443322221 1235789999999
Q ss_pred CHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC------
Q 011351 216 GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE------ 289 (488)
Q Consensus 216 G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~------ 289 (488)
|.+|+|+|..+.++|.+|+++++.++... +. .....+.+++.||++++++.++++..++++++..|.+.
T Consensus 281 G~~a~d~A~~l~~~G~~Vtlv~~~~~~~~---~~--~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~ 355 (449)
T TIGR01316 281 GNTAVDSARTALRLGAEVHCLYRRTREDM---TA--RVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQE 355 (449)
T ss_pred CHHHHHHHHHHHHcCCEEEEEeecCcccC---CC--CHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecC
Confidence 99999999999999999999998764211 11 12223557889999999999999976555666666543
Q ss_pred ---CC-----------cEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcc
Q 011351 290 ---DG-----------STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT 354 (488)
Q Consensus 290 ---~g-----------~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~ 354 (488)
+| +++++|.||+++|+.|+..+++..++..+ +|+|.||++++|+.|+|||+|||+..+.
T Consensus 356 ~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~~------ 429 (449)
T TIGR01316 356 QIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGAA------ 429 (449)
T ss_pred cCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCcH------
Confidence 23 26999999999999999988888888865 5789999999999999999999986432
Q ss_pred cccccHHHHHHHHHHHHHHHhc
Q 011351 355 ARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 355 ~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
.+..|+.+|+.+|.+|..
T Consensus 430 ----~v~~Ai~~G~~AA~~I~~ 447 (449)
T TIGR01316 430 ----TVIRAMGQGKRAAKSINE 447 (449)
T ss_pred ----HHHHHHHHHHHHHHHHHh
Confidence 556799999999999863
No 43
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=3.3e-38 Score=322.47 Aligned_cols=400 Identities=19% Similarity=0.257 Sum_probs=266.3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC------CCCCCC---CCCC-CccccCCC-----CCCC-CCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE------AYAPYE---RPAL-TKGYLFPL-----DKKP-ARLPG 113 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~------~~~~~~---~~~l-~~~~~~~~-----~~~~-~~~~~ 113 (488)
..+|++|||||+||++||.++++.|. +|+|||+. ...... +... ++.++... .... ..+ +
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~---~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~-G 78 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGL---KVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADH-G 78 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCC---eEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhc-C
Confidence 46899999999999999999999987 89999981 111100 0000 01000000 0000 000 0
Q ss_pred ccccc-CCC--------------CCCCCHhHHHHCCCeEEeCCcEEEEeC--CCcEEEeC--CCcEEEeccEEeccCCCC
Q 011351 114 FHTCV-GSG--------------GERQTPEWYKEKGIEMIYQDPVTSIDI--EKQTLITN--SGKLLKYGSLIVATGCTA 174 (488)
Q Consensus 114 ~~~~~-~~~--------------~~~~~~~~~~~~~i~~~~~~~v~~id~--~~~~v~~~--~g~~i~yd~lVlAtG~~~ 174 (488)
..... ..+ ......+.++..+++++.+ ++..++. +.++|.+. +++++.||+||||||+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p 157 (475)
T PRK06327 79 IHVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKG-RGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEP 157 (475)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCC
Confidence 00000 000 0001123345568998875 5655653 34667664 345799999999999998
Q ss_pred CcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHH
Q 011351 175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 254 (488)
Q Consensus 175 ~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~ 254 (488)
..+|..+ .++...+. ++.+......+++++|||+|.+|+|+|..|.++|.+|+++++.+++++. +++++.+.
T Consensus 158 ~~~p~~~---~~~~~~~~----~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~ 229 (475)
T PRK06327 158 RHLPGVP---FDNKIILD----NTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-ADEQVAKE 229 (475)
T ss_pred CCCCCCC---CCCceEEC----cHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-CCHHHHHH
Confidence 6443321 22221221 2222222345799999999999999999999999999999999998875 78999999
Q ss_pred HHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC--C--cEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeC
Q 011351 255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED--G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVD 327 (488)
Q Consensus 255 ~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~--g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd 327 (488)
+.+.|++.||+++++++|++++..+ +.+ .+.+.+ | +++++|.+++++|.+|++++ ++.+++..+ +|+|.||
T Consensus 230 ~~~~l~~~gi~i~~~~~v~~i~~~~-~~v-~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd 307 (475)
T PRK06327 230 AAKAFTKQGLDIHLGVKIGEIKTGG-KGV-SVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVD 307 (475)
T ss_pred HHHHHHHcCcEEEeCcEEEEEEEcC-CEE-EEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeEC
Confidence 9999999999999999999998543 333 355444 3 46999999999999999884 567788765 5779999
Q ss_pred CCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeEeccccCCCCcceeeEE
Q 011351 328 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQF 406 (488)
Q Consensus 328 ~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~ 406 (488)
++++|+.|+|||+|||+..+. ....|..+|+.+|.+|++... ..+..+|... .++.. +..
T Consensus 308 ~~~~Ts~~~VyA~GD~~~~~~----------~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~--~~~pe-------~a~ 368 (475)
T PRK06327 308 DHCRTNVPNVYAIGDVVRGPM----------LAHKAEEEGVAVAERIAGQKGHIDYNTIPWVI--YTSPE-------IAW 368 (475)
T ss_pred CCCccCCCCEEEEEeccCCcc----------hHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE--eCCcc-------eEE
Confidence 999999999999999997432 345689999999999986432 2344556532 11211 223
Q ss_pred eeCCCCc-------E--EEE--c--------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-
Q 011351 407 FGDNVGE-------T--IEI--G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K- 462 (488)
Q Consensus 407 ~g~~~~~-------~--~~~--~--------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~- 462 (488)
+|....+ + ... . .-...+.++.++ +++|+|+++++.++.++... ..+|+++.+++ .
T Consensus 369 vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~ 448 (475)
T PRK06327 369 VGKTEQQLKAEGVEYKAGKFPFMANGRALAMGEPDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIA 448 (475)
T ss_pred EeCCHHHHHHcCCCEEEEEEcccccchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence 3332210 0 000 0 012347777764 69999999988887776655 55678888886 3
Q ss_pred hhhcCCCcHHHHHHHHHccCC
Q 011351 463 AKLQQASSVEEALEIARAALP 483 (488)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~ 483 (488)
..++.|||+.|.++.|++.+.
T Consensus 449 ~~~~~hPt~~e~~~~~~~~~~ 469 (475)
T PRK06327 449 RICHAHPTLSEVWHEAALAVD 469 (475)
T ss_pred cCCcCCCChHHHHHHHHHHhc
Confidence 335789999999999986553
No 44
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.9e-39 Score=328.80 Aligned_cols=333 Identities=21% Similarity=0.221 Sum_probs=241.5
Q ss_pred cccccccceeeccccC--CCCcccceec--cccccccccccccccc--------cccCCCCCeEEEEcCchHHHHHHHHH
Q 011351 3 SVSNSLSFKHGLSLWC--PQSPSLHRIR--HSSAKNFQRRGFVVAY--------SSFANENREFVIVGGGNAAGYAARTF 70 (488)
Q Consensus 3 ~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~~vvIIGgG~AGl~aA~~L 70 (488)
..+|||+.+||++|++ +|+.+|.|.. .++.++...|+..++. .+...+.++|+|||||+||++||..|
T Consensus 80 ~~~np~p~~~grvC~~~~~Ce~~C~r~~~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpAGl~aA~~l 159 (464)
T PRK12831 80 AKYNALPAVCGRVCPQESQCEGKCVLGIKGEPVAIGKLERFVADWARENGIDLSETEEKKGKKVAVIGSGPAGLTCAGDL 159 (464)
T ss_pred HHhCCchhhhhccCCCCCChHHHhcCCCCCCCeehhHHHHHHHHHHHHcCCCCCCCcCCCCCEEEEECcCHHHHHHHHHH
Confidence 4689999999999998 9999999997 7888888888776531 12234578999999999999999999
Q ss_pred HHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCC
Q 011351 71 VEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK 150 (488)
Q Consensus 71 ~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~ 150 (488)
++.|+ +|+|+|+++..... +. +-.+. .+++.. .......+++++.++++++++.+ .
T Consensus 160 ~~~G~---~V~v~e~~~~~GG~---l~--~gip~----~~l~~~------~~~~~~~~~~~~~gv~i~~~~~v------~ 215 (464)
T PRK12831 160 AKMGY---DVTIFEALHEPGGV---LV--YGIPE----FRLPKE------TVVKKEIENIKKLGVKIETNVVV------G 215 (464)
T ss_pred HhCCC---eEEEEecCCCCCCe---ee--ecCCC----ccCCcc------HHHHHHHHHHHHcCCEEEcCCEE------C
Confidence 99987 89999987643210 00 00010 111100 00122346778899999988644 1
Q ss_pred cEEEeCCC-cEEEeccEEeccCC-CCCcCCCCCCCCCCcEEEecCHHHHHHHHH--------hhhcCCeEEEECCCHHHH
Q 011351 151 QTLITNSG-KLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALIS--------SLEKAKKVVVVGGGYIGM 220 (488)
Q Consensus 151 ~~v~~~~g-~~i~yd~lVlAtG~-~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~--------~~~~~~~vvVvG~G~~g~ 220 (488)
+.+.+++. +.+.||+||||||+ .++ .++++|.+.+++++..++.....+.. ....+++|+|||+|.+|+
T Consensus 216 ~~v~~~~~~~~~~~d~viiAtGa~~~~-~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~ 294 (464)
T PRK12831 216 KTVTIDELLEEEGFDAVFIGSGAGLPK-FMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAM 294 (464)
T ss_pred CcCCHHHHHhccCCCEEEEeCCCCCCC-CCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHH
Confidence 23333332 23579999999998 465 45678877888877655444322211 124679999999999999
Q ss_pred HHHHHHHhCCCcEEEEecCCc-CcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC----------
Q 011351 221 EVAAAAVGWKLDTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---------- 289 (488)
Q Consensus 221 e~A~~l~~~g~~v~lv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~---------- 289 (488)
|+|..+.++|.+|+++++.+. .++ ... ..+ +.+++.||++++++.++++..++++++.++.+.
T Consensus 295 d~A~~l~r~Ga~Vtlv~r~~~~~m~----a~~-~e~-~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~ 368 (464)
T PRK12831 295 DAARTALRLGAEVHIVYRRSEEELP----ARV-EEV-HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDAS 368 (464)
T ss_pred HHHHHHHHcCCEEEEEeecCcccCC----CCH-HHH-HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCC
Confidence 999999999999999998653 222 111 122 235678999999999999976556666655442
Q ss_pred --------CCc--EEEcCEEEEeecCccCChhhhh-cCCccc-CCCEEeCCC-CCCCCCCEEEEceecccCCccCCcccc
Q 011351 290 --------DGS--TIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRTAR 356 (488)
Q Consensus 290 --------~g~--~i~~D~vi~a~G~~p~~~~~~~-~gl~~~-~g~i~vd~~-~~t~~~~Ifa~GD~a~~~~~~~~~~~~ 356 (488)
+|+ ++++|.||+++|+.|+..++.. .++..+ +|+|.||++ ++|+.|+|||+|||+..+.
T Consensus 369 Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~-------- 440 (464)
T PRK12831 369 GRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAA-------- 440 (464)
T ss_pred CCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCch--------
Confidence 222 6999999999999999888776 677765 578999997 9999999999999986432
Q ss_pred cccHHHHHHHHHHHHHHHhc
Q 011351 357 VEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 357 ~~~~~~A~~~g~~~a~~i~~ 376 (488)
.+..|..+|+.+|.+|..
T Consensus 441 --~v~~Ai~~G~~AA~~I~~ 458 (464)
T PRK12831 441 --TVILAMGAGKKAAKAIDE 458 (464)
T ss_pred --HHHHHHHHHHHHHHHHHH
Confidence 455688889998888753
No 45
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-39 Score=300.39 Aligned_cols=406 Identities=23% Similarity=0.356 Sum_probs=314.6
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCC--
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT-- 126 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 126 (488)
+++...+|||+|.+..+++...+.... +..+.+|+.++..||.||+|++.+++..+..+..-..|..+.|++....+
T Consensus 176 p~hvp~liigggtaAfaa~rai~s~da-~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffep 254 (659)
T KOG1346|consen 176 PKHVPYLIIGGGTAAFAAFRAIKSNDA-TAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEP 254 (659)
T ss_pred cccCceeEEcCCchhhhcccccccCCC-CceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecC
Confidence 345679999999998888888776654 77999999999999999999998887666554443345555555432221
Q ss_pred HhHH---------HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCC---CCCCcEEEecCH
Q 011351 127 PEWY---------KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG---GYLPGVHYIRDV 194 (488)
Q Consensus 127 ~~~~---------~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g---~~~~gv~~~~~~ 194 (488)
..+| ..-|+.+..+-.|..||.+.+.|+++||.+|.||+++||||.+|..++.+.. .-...+.+++..
T Consensus 255 d~FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p 334 (659)
T KOG1346|consen 255 DGFFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYP 334 (659)
T ss_pred CcceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecc
Confidence 1122 2237888999999999999999999999999999999999999987664422 224567888988
Q ss_pred HHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCC
Q 011351 195 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGA 270 (488)
Q Consensus 195 ~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~----g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~ 270 (488)
.|.+++.......++|.|||+|++|.|+|+.|.+. |.+|+-+......+...+++.++++-.+.+++.||.++.+.
T Consensus 335 ~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna 414 (659)
T KOG1346|consen 335 ADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNA 414 (659)
T ss_pred hHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccch
Confidence 99988888777889999999999999999999764 66888887888888888888999999999999999999999
Q ss_pred eEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc--CCCEEeCCCCCCCCCCEEEEceecccCC
Q 011351 271 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPL 348 (488)
Q Consensus 271 ~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~--~g~i~vd~~~~t~~~~Ifa~GD~a~~~~ 348 (488)
.|.++... .+.+ .+.++||.++..|+||+|+|-.||+++++..||+.| -||+.||..++.. .|||++||++.+.+
T Consensus 415 ~v~sv~~~-~~nl-~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~ar-~NvwvAGdaacF~D 491 (659)
T KOG1346|consen 415 KVESVRKC-CKNL-VLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKAR-ENVWVAGDAACFED 491 (659)
T ss_pred hhhhhhhh-ccce-EEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeecc-cceeeecchhhhhc
Confidence 99998754 3333 588999999999999999999999999999999876 4899999998874 79999999999999
Q ss_pred ccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCceeEeccccCCCCcc----ee---eEEeeCCC-----CcEE-
Q 011351 349 KMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRK----VW---WQFFGDNV-----GETI- 415 (488)
Q Consensus 349 ~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~----~~---~~~~g~~~-----~~~~- 415 (488)
...|+. +++||.+|...|+.+.+||.+ ...+|.....||++....-|..+. .. +-.+..+. .++.
T Consensus 492 ~~LGrR-RVehhdhavvSGRLAGENMtg-Aakpy~hqsmFWsdlgP~igyeaIGlvDSSLpTVgVfA~p~s~~~~~~~se 569 (659)
T KOG1346|consen 492 GVLGRR-RVEHHDHAVVSGRLAGENMTG-AAKPYKHQSMFWSDLGPEIGYEAIGLVDSSLPTVGVFALPSSATRVDQLSE 569 (659)
T ss_pred ccccce-eccccccceeeceeccccccc-ccCCccccceeeeccCcccccceeeecccCCCcceeeeccccccchhhhhh
Confidence 888864 478999999999999999986 556888888999974322111000 00 00111111 0000
Q ss_pred --------------------------------EEccCCCcEEEEEEECCEEEEEEeecCChHHhhHHHHHHhcCCCCC
Q 011351 416 --------------------------------EIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVD 461 (488)
Q Consensus 416 --------------------------------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (488)
..++-..|-+.||++|++|||++| .+--..+...|..|..+...|
T Consensus 570 ~sdt~v~~~s~s~s~ss~~~~~~s~~~v~~~P~e~~~ygKgViFYl~d~~iVGilL-wN~Fnr~~~AR~II~d~kk~d 646 (659)
T KOG1346|consen 570 SSDTDVPETSTSSSQSSKSDAGASQDGVTCDPDEAGNYGKGVIFYLKDDKIVGILL-WNLFNRIGLARTIINDNKKYD 646 (659)
T ss_pred ccCCCCccccccccccccccCCcCCCCCccCcccccccCceEEEEecCCcEEEEEe-hhhhccchhhHHHhccccchh
Confidence 000112366889999999999997 455557888899997776654
No 46
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=7.1e-38 Score=320.44 Aligned_cols=393 Identities=18% Similarity=0.197 Sum_probs=255.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC----C----CCCC---C-CCCCcccc---------------CC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA----Y----APYE---R-PALTKGYL---------------FP 103 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~----~----~~~~---~-~~l~~~~~---------------~~ 103 (488)
++||+||||||||++||..++++|. +|+|||+.+ . .... + +-.++.++ +.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~---~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g 81 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGK---KVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYG 81 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCC---eEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCC
Confidence 5899999999999999999999987 899999632 1 1100 0 00011000 00
Q ss_pred CC-CCCCCCCCcccc---cCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCC---CcEEEeccEEeccCCCCCc
Q 011351 104 LD-KKPARLPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS---GKLLKYGSLIVATGCTASR 176 (488)
Q Consensus 104 ~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~---g~~i~yd~lVlAtG~~~~~ 176 (488)
.. ....++..+... ............++..+++++.+ ++.- .+.++|.+.+ ++.+.||+||||||+.|..
T Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g-~a~~--~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~ 158 (499)
T PTZ00052 82 WKTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYING-LAKL--KDEHTVSYGDNSQEETITAKYILIATGGRPSI 158 (499)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEE-EEEE--ccCCEEEEeeCCCceEEECCEEEEecCCCCCC
Confidence 00 000000000000 00000000111223356777764 3332 2345665532 3479999999999999874
Q ss_pred CCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHH
Q 011351 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 256 (488)
Q Consensus 177 ~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~ 256 (488)
++.+++... ... .++.+......+++++|||+|.+|+|+|..|+++|.+|+++.+. .+++ .+++++.+.++
T Consensus 159 p~~i~G~~~----~~~---~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~-~~d~~~~~~l~ 229 (499)
T PTZ00052 159 PEDVPGAKE----YSI---TSDDIFSLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPLR-GFDRQCSEKVV 229 (499)
T ss_pred CCCCCCccc----eee---cHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-cccc-cCCHHHHHHHH
Confidence 323444321 111 23333333345789999999999999999999999999999874 6665 48999999999
Q ss_pred HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhh--hhcCCccc-CCCEEeCCCCCCC
Q 011351 257 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGGIQVDGQFRTR 333 (488)
Q Consensus 257 ~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~-~g~i~vd~~~~t~ 333 (488)
+.|++.||++++++.+++++..+ +. ..+.+.+|+++++|.|++++|++||++++ ++++++.+ +|++.+++. +|+
T Consensus 230 ~~l~~~GV~i~~~~~v~~v~~~~-~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~Ts 306 (499)
T PTZ00052 230 EYMKEQGTLFLEGVVPINIEKMD-DK-IKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CTN 306 (499)
T ss_pred HHHHHcCCEEEcCCeEEEEEEcC-Ce-EEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cCC
Confidence 99999999999999999997543 33 34677888899999999999999999875 67888775 466777766 999
Q ss_pred CCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeEeccccCCCCcceeeEEeeCCC
Q 011351 334 MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNV 411 (488)
Q Consensus 334 ~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~ 411 (488)
.|+|||+|||+.... ..+..|.++|+.+|+||++.... .+..+|+. .|..+- +..+|...
T Consensus 307 ~p~IyAiGDv~~~~~---------~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~~---ift~p~------ia~vGlte 368 (499)
T PTZ00052 307 IPNIFAVGDVVEGRP---------ELTPVAIKAGILLARRLFKQSNEFIDYTFIPTT---IFTPIE------YGACGYSS 368 (499)
T ss_pred CCCEEEEEEecCCCc---------ccHHHHHHHHHHHHHHHhCCCCCcCccccCCeE---EecCCc------ceeecCCH
Confidence 999999999996221 14567999999999999974322 34445653 232110 11222110
Q ss_pred C----------------------------cEEE---Ecc-----CCCcEEEEEEE---CCEEEEEEeecCChHHhhHHHH
Q 011351 412 G----------------------------ETIE---IGN-----FDPKIATFWID---SGKLKGVLVESGSPEEFQLLPT 452 (488)
Q Consensus 412 ~----------------------------~~~~---~~~-----~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~ 452 (488)
. .... .+. ....|.++.++ +++|+|+++++.++.++...-.
T Consensus 369 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~ 448 (499)
T PTZ00052 369 EAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFS 448 (499)
T ss_pred HHHHHhcCCCCEEEEEeecccchhhccccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHHH
Confidence 0 0000 000 02447777653 5999999998888888775544
Q ss_pred -HHhcCCCCC-h-hhhcCCCcHHHHHHHHH
Q 011351 453 -LARSQPFVD-K-AKLQQASSVEEALEIAR 479 (488)
Q Consensus 453 -~~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 479 (488)
+|+++.+++ . ..++.|||++|++..+.
T Consensus 449 ~ai~~~~t~~~l~~~~~~hPt~sE~~~~~~ 478 (499)
T PTZ00052 449 LALKLGAKKSDFDSMIGIHPTDAEVFMNLS 478 (499)
T ss_pred HHHHCCCCHHHHhcccccCCCCchhhEEEE
Confidence 578888876 3 34588999999987653
No 47
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=1.2e-37 Score=309.10 Aligned_cols=293 Identities=23% Similarity=0.327 Sum_probs=227.8
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHH
Q 011351 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE 132 (488)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (488)
+|||||||+||+.+|.+|+++..++.+|+|||++++++|.. .++. ++.. .....++ .....+++++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~-~~~~-~~~g-~~~~~~~-----------~~~~~~~~~~ 66 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSG-MLPG-MIAG-HYSLDEI-----------RIDLRRLARQ 66 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccc-hhhH-HHhe-eCCHHHh-----------cccHHHHHHh
Confidence 58999999999999999976533467999999999988873 3321 2211 1111111 1234567778
Q ss_pred CCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHH----HHHhh---h
Q 011351 133 KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADA----LISSL---E 205 (488)
Q Consensus 133 ~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~----~~~~~---~ 205 (488)
.+++++.+ +|+.+|+++++|.+++|+++.||+||||||+.+. .|.++| ..++++.+++..++.. +.+.. .
T Consensus 67 ~gv~~~~~-~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~-~~~i~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (364)
T TIGR03169 67 AGARFVIA-EATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTP-LSGVEG-AADLAVPVKPIENFLARWEALLESADAPP 143 (364)
T ss_pred cCCEEEEE-EEEEEecccCEEEECCCCcccccEEEEccCCCCC-CCCCCc-ccccccccCCHHHHHHHHHHHHHHHhcCC
Confidence 89999874 8999999999999999988999999999999987 455666 3456666777666654 33322 1
Q ss_pred cCCeEEEECCCHHHHHHHHHHHh----CC--CcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCC
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVG----WK--LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS 279 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~----~g--~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~ 279 (488)
..++++|+|+|.+|+|+|..|.+ .+ .+|+++ ..+.+++. +++.+...+++.|++.||++++++.+++++.+
T Consensus 144 ~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~- 220 (364)
T TIGR03169 144 GTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPG-FPAKVRRLVLRLLARRGIEVHEGAPVTRGPDG- 220 (364)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccccc-CCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCC-
Confidence 45799999999999999999975 34 479998 66677764 78889999999999999999999999998632
Q ss_pred CCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCC-CCCCEEEEceecccCCccCCccccc
Q 011351 280 DGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTARV 357 (488)
Q Consensus 280 ~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t-~~~~Ifa~GD~a~~~~~~~~~~~~~ 357 (488)
.+.+++|+++++|.+|+|+|.+|+ .++...++..+ +|++.||+++|| ++|||||+|||+..+.... .
T Consensus 221 -----~v~~~~g~~i~~D~vi~a~G~~p~-~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~-----~ 289 (364)
T TIGR03169 221 -----ALILADGRTLPADAILWATGARAP-PWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPR-----P 289 (364)
T ss_pred -----eEEeCCCCEEecCEEEEccCCChh-hHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCC-----C
Confidence 467788999999999999999998 56677777764 688999999998 9999999999998654322 1
Q ss_pred ccHHHHHHHHHHHHHHHhc
Q 011351 358 EHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 358 ~~~~~A~~~g~~~a~~i~~ 376 (488)
.....|..||+.+|+||..
T Consensus 290 ~~~~~A~~~g~~~a~ni~~ 308 (364)
T TIGR03169 290 KAGVYAVRQAPILAANLRA 308 (364)
T ss_pred CchHHHHHhHHHHHHHHHH
Confidence 2445689999999999864
No 48
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=100.00 E-value=5.2e-37 Score=330.96 Aligned_cols=332 Identities=19% Similarity=0.188 Sum_probs=238.5
Q ss_pred cccccccceeeccccC--CCCcccceeccccccccccccccccc---------------cc-cCCCCCeEEEEcCchHHH
Q 011351 3 SVSNSLSFKHGLSLWC--PQSPSLHRIRHSSAKNFQRRGFVVAY---------------SS-FANENREFVIVGGGNAAG 64 (488)
Q Consensus 3 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~-~~~~~~~vvIIGgG~AGl 64 (488)
..+|||+++||++|++ +|+.+|.+...++.++...|+..+.. .+ .....++|+|||||||||
T Consensus 240 ~~~np~p~~~GrVCp~~~~CE~~C~~~~~pV~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~~~~~gkkVaVIGsGPAGL 319 (944)
T PRK12779 240 ESCNPLPNVTGRVCPQELQCQGVCTHTKRPIEIGQLEWYLPQHEKLVNPNANERFAGRISPWAAAVKPPIAVVGSGPSGL 319 (944)
T ss_pred HHhCChhHHhcCcCCCccCHHHhccCCCcCcchhHHHHHHHHHHHhhchhhhhcccccccccccCCCCeEEEECCCHHHH
Confidence 4789999999999999 79999999888888888877766541 11 123568999999999999
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEE
Q 011351 65 YAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVT 144 (488)
Q Consensus 65 ~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 144 (488)
+||..|++.|+ +|||+|+.+..... +. |-.+. .+++. +...+..+.++..|++++.++.+
T Consensus 320 saA~~Lar~G~---~VtVfE~~~~~GG~---l~--yGIP~----~rlp~-------~vi~~~i~~l~~~Gv~f~~n~~v- 379 (944)
T PRK12779 320 INAYLLAVEGF---PVTVFEAFHDLGGV---LR--YGIPE----FRLPN-------QLIDDVVEKIKLLGGRFVKNFVV- 379 (944)
T ss_pred HHHHHHHHCCC---eEEEEeeCCCCCce---EE--ccCCC----CcChH-------HHHHHHHHHHHhhcCeEEEeEEe-
Confidence 99999999998 89999988653210 00 11111 11110 00122345677789999987543
Q ss_pred EEeCCCcEEEeCCCcEEEeccEEeccCCC-CCcCCCCCCCCCCcEEEecCHHHHHHHHHh----------hhcCCeEEEE
Q 011351 145 SIDIEKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALISS----------LEKAKKVVVV 213 (488)
Q Consensus 145 ~id~~~~~v~~~~g~~i~yd~lVlAtG~~-~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~----------~~~~~~vvVv 213 (488)
.+.+++++.....||+|+||||+. ++ .++++|.+.+|+++..++......... ...+++|+||
T Consensus 380 -----G~dit~~~l~~~~yDAV~LAtGA~~pr-~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVI 453 (944)
T PRK12779 380 -----GKTATLEDLKAAGFWKIFVGTGAGLPT-FMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVI 453 (944)
T ss_pred -----ccEEeHHHhccccCCEEEEeCCCCCCC-cCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEE
Confidence 345666666556899999999995 54 456788888898876655443322111 1257899999
Q ss_pred CCCHHHHHHHHHHHhCCCcEEEEecCCc-CcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCC-CCcEEEEEe---
Q 011351 214 GGGYIGMEVAAAAVGWKLDTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKL--- 288 (488)
Q Consensus 214 G~G~~g~e~A~~l~~~g~~v~lv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~-~~~v~~v~l--- 288 (488)
|||.+|+|+|..+.++|.+|+++.+++. .++ .....+.. ..+.||+++++..++++..++ ++.+.++.+
T Consensus 454 GGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mp-----a~~~e~~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~ 527 (944)
T PRK12779 454 GGGNTAMDAARTAKRLGGNVTIVYRRTKSEMP-----ARVEELHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVN 527 (944)
T ss_pred CCCHHHHHHHHHHHHcCCEEEEEEecCccccc-----ccHHHHHH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEE
Confidence 9999999999999999999999988753 222 22223333 346799999999999997542 334544432
Q ss_pred ------C--------CC--cEEEcCEEEEeecCccCChhhh-hcCCccc-CCCEEeCC-CCCCCCCCEEEEceecccCCc
Q 011351 289 ------E--------DG--STIDADTIVIGIGAKPTVSPFE-RVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFPLK 349 (488)
Q Consensus 289 ------~--------~g--~~i~~D~vi~a~G~~p~~~~~~-~~gl~~~-~g~i~vd~-~~~t~~~~Ifa~GD~a~~~~~ 349 (488)
. +| .+++||.||+|+|+.|+..+.. ..+++.+ +|.|.||+ +++|+.|+|||+|||+..+.
T Consensus 528 ~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~~- 606 (944)
T PRK12779 528 ELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGGS- 606 (944)
T ss_pred EeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCChH-
Confidence 1 12 3699999999999999865432 3467655 57799997 58999999999999997432
Q ss_pred cCCcccccccHHHHHHHHHHHHHHHhc
Q 011351 350 MYDRTARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 350 ~~~~~~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
.+..|..+|+.||.+|..
T Consensus 607 ---------~vv~Ai~eGr~AA~~I~~ 624 (944)
T PRK12779 607 ---------TAIRAAGDGQAAAKEIVG 624 (944)
T ss_pred ---------HHHHHHHHHHHHHHHHHH
Confidence 345688899999988865
No 49
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=100.00 E-value=3.6e-37 Score=313.46 Aligned_cols=331 Identities=23% Similarity=0.247 Sum_probs=230.1
Q ss_pred cccccccceeeccccCC--CCcccceec--cccccccccccccccc--------cccCCCCCeEEEEcCchHHHHHHHHH
Q 011351 3 SVSNSLSFKHGLSLWCP--QSPSLHRIR--HSSAKNFQRRGFVVAY--------SSFANENREFVIVGGGNAAGYAARTF 70 (488)
Q Consensus 3 ~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~~vvIIGgG~AGl~aA~~L 70 (488)
-++|||+.+||++|.++ |+..|.+.. .+++++...++..... .+.....++|+|||||+||+++|..|
T Consensus 80 ~~~~p~~~~~g~vc~~~~~C~~~C~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgGpaGl~aA~~l 159 (457)
T PRK11749 80 LETNPLPAVCGRVCPQERLCEGACVRGKKGEPVAIGRLERYITDWAMETGWVLFKRAPKTGKKVAVIGAGPAGLTAAHRL 159 (457)
T ss_pred HHhCCchhhhcCcCCCccCHHHHhcCCCCCCCcchHHHHHHHHHHHHhcCCCCCCCCccCCCcEEEECCCHHHHHHHHHH
Confidence 46899999999999998 999999876 5566666555444321 22234568999999999999999999
Q ss_pred HHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCC
Q 011351 71 VEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK 150 (488)
Q Consensus 71 ~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~ 150 (488)
++.|+ +|+|+|+++..... +. +..+....+.. ......+++++.+++++.++.+.
T Consensus 160 ~~~g~---~V~lie~~~~~gG~---l~--~gip~~~~~~~-----------~~~~~~~~l~~~gv~~~~~~~v~------ 214 (457)
T PRK11749 160 ARKGY---DVTIFEARDKAGGL---LR--YGIPEFRLPKD-----------IVDREVERLLKLGVEIRTNTEVG------ 214 (457)
T ss_pred HhCCC---eEEEEccCCCCCcE---ee--ccCCCccCCHH-----------HHHHHHHHHHHcCCEEEeCCEEC------
Confidence 99987 89999988653210 00 00010000000 01233466778899999876541
Q ss_pred cEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHH---HhhhcCCeEEEECCCHHHHHHHHHHH
Q 011351 151 QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI---SSLEKAKKVVVVGGGYIGMEVAAAAV 227 (488)
Q Consensus 151 ~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~---~~~~~~~~vvVvG~G~~g~e~A~~l~ 227 (488)
+.+.+++.. +.||+||+|||+.....+.++|.+.+++.+..+........ .....+++++|||+|.+|+|+|..+.
T Consensus 215 ~~v~~~~~~-~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~ 293 (457)
T PRK11749 215 RDITLDELR-AGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAK 293 (457)
T ss_pred CccCHHHHH-hhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHH
Confidence 223333333 78999999999863334456676666766543222221110 11236799999999999999999999
Q ss_pred hCCC-cEEEEecCCc-CcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe-----------------
Q 011351 228 GWKL-DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL----------------- 288 (488)
Q Consensus 228 ~~g~-~v~lv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l----------------- 288 (488)
+.|. +|+++++.+. .++. .. ...+.+++.||++++++.+.++..++ +.+.+|.+
T Consensus 294 ~~G~~~Vtlv~~~~~~~~~~--~~----~~~~~~~~~GV~i~~~~~v~~i~~~~-~~~~~v~~~~~~~~~~~~~g~~~~~ 366 (457)
T PRK11749 294 RLGAESVTIVYRRGREEMPA--SE----EEVEHAKEEGVEFEWLAAPVEILGDE-GRVTGVEFVRMELGEPDASGRRRVP 366 (457)
T ss_pred HcCCCeEEEeeecCcccCCC--CH----HHHHHHHHCCCEEEecCCcEEEEecC-CceEEEEEEEEEecCcCCCCCcccC
Confidence 9987 8999998754 2321 11 23456788999999999999998543 33223332
Q ss_pred --CCCcEEEcCEEEEeecCccCChhhh-hcCCccc-CCCEEeCC-CCCCCCCCEEEEceecccCCccCCcccccccHHHH
Q 011351 289 --EDGSTIDADTIVIGIGAKPTVSPFE-RVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA 363 (488)
Q Consensus 289 --~~g~~i~~D~vi~a~G~~p~~~~~~-~~gl~~~-~g~i~vd~-~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A 363 (488)
.+++++++|.||+++|.+|+..++. ..++..+ +|+|.||+ +++|+.|+|||+|||+..+. .+..|
T Consensus 367 ~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~----------~~~~A 436 (457)
T PRK11749 367 IEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGAA----------TVVWA 436 (457)
T ss_pred CCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCch----------HHHHH
Confidence 1234799999999999999977764 4566654 67899998 89999999999999995321 45578
Q ss_pred HHHHHHHHHHHhc
Q 011351 364 RQSAQHCIKALLS 376 (488)
Q Consensus 364 ~~~g~~~a~~i~~ 376 (488)
..+|+.+|.+|..
T Consensus 437 ~~~G~~aA~~I~~ 449 (457)
T PRK11749 437 VGDGKDAAEAIHE 449 (457)
T ss_pred HHHHHHHHHHHHH
Confidence 8999999988864
No 50
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=1.1e-36 Score=280.24 Aligned_cols=403 Identities=20% Similarity=0.352 Sum_probs=276.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC----CCCCccccCCCC------------------CC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER----PALTKGYLFPLD------------------KK 107 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~----~~l~~~~~~~~~------------------~~ 107 (488)
..+|++|||+||+|..||.+.++.|+ +-+.||++......- +--|+.++...+ ..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGl---kTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~ 114 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGL---KTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSV 114 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcc---eeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccce
Confidence 57999999999999999999999998 688899976543110 000111111100 00
Q ss_pred CCCCCCcccc---cCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCc--EEEeccEEeccCCCCCcCCCCCC
Q 011351 108 PARLPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIG 182 (488)
Q Consensus 108 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~--~i~yd~lVlAtG~~~~~~~~~~g 182 (488)
..+++.+... ..+....-....++++++++..+ .-.-++|..-++.-.||+ .+.++++|||||+.-..+| |
T Consensus 115 ~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG-~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~P---G 190 (506)
T KOG1335|consen 115 SLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKG-FGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPFP---G 190 (506)
T ss_pred ecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEee-eEeecCCceEEEeccCCCceEEeeeeEEEEeCCccCCCC---C
Confidence 0111000000 00000111223456667777765 233355554455555664 5899999999999644333 3
Q ss_pred CCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHc
Q 011351 183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 262 (488)
Q Consensus 183 ~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~ 262 (488)
..+++-.... +.......+-+++++|+|+|.+|+|++....++|.+||+++..+.+.+. +|.++++.+++.|++.
T Consensus 191 I~IDekkIVS----StgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-mD~Eisk~~qr~L~kQ 265 (506)
T KOG1335|consen 191 ITIDEKKIVS----STGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-MDGEISKAFQRVLQKQ 265 (506)
T ss_pred eEecCceEEe----cCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-cCHHHHHHHHHHHHhc
Confidence 3232211111 2222233356899999999999999999999999999999999999986 8999999999999999
Q ss_pred CcEEEcCCeEEEEEeCCCCcEEEEEeCC---C--cEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCC
Q 011351 263 GVKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRM 334 (488)
Q Consensus 263 GV~v~~~~~v~~i~~~~~~~v~~v~l~~---g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~ 334 (488)
|++|++++++...+.+.++.+ .+.+++ + ++++||.+++++|++|-+.- +++.|++.| ++++.||..++|.+
T Consensus 266 gikF~l~tkv~~a~~~~dg~v-~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~v 344 (506)
T KOG1335|consen 266 GIKFKLGTKVTSATRNGDGPV-EIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTKV 344 (506)
T ss_pred CceeEeccEEEEeeccCCCce-EEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccccC
Confidence 999999999999998877754 455543 2 47999999999999998764 577788766 67899999999999
Q ss_pred CCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCC-CCCCCCCCceeEeccccCCCCcceeeEEeeCCCCc
Q 011351 335 PGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ-THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE 413 (488)
Q Consensus 335 ~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~-~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~ 413 (488)
|+||++||+...|+ ...-|..+|-.+.+.|.++. ...|.-+|- ..|.++- +.++|..+.+
T Consensus 345 P~i~~IGDv~~gpM----------LAhkAeeegI~~VE~i~g~~~hv~ynciP~---v~ythPE------vawVG~TEeq 405 (506)
T KOG1335|consen 345 PHIYAIGDVTLGPM----------LAHKAEEEGIAAVEGIAGGHGHVDYNCIPS---VVYTHPE------VAWVGKTEEQ 405 (506)
T ss_pred CceEEecccCCcch----------hhhhhhhhchhheeeecccCcccccCCCCc---eeecccc------eeeeccchhh
Confidence 99999999998765 23348889988888887654 345666663 4455442 2334444321
Q ss_pred E------EEEccC-------------CCcEEEEEE--ECCEEEEEEeecCChHHhhHHHHH-HhcCCCCC-hhhh-cCCC
Q 011351 414 T------IEIGNF-------------DPKIATFWI--DSGKLKGVLVESGSPEEFQLLPTL-ARSQPFVD-KAKL-QQAS 469 (488)
Q Consensus 414 ~------~~~~~~-------------~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~-~~~~ 469 (488)
+ +..|.| ...|+++.. +++||+|++++++++.++.+-..| +..+.... ...+ +.||
T Consensus 406 lkeegi~y~vgkfpF~aNsRaktn~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvchaHP 485 (506)
T KOG1335|consen 406 LKEEGIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAHP 485 (506)
T ss_pred HHhcCcceEeeeccccccchhhccCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhhccCCCC
Confidence 1 112221 134666655 469999999988888887765554 56666554 3444 9999
Q ss_pred cHHHHHHHHHccCCc
Q 011351 470 SVEEALEIARAALPV 484 (488)
Q Consensus 470 ~~~~~~~~~~~~~~~ 484 (488)
|++||+++|..++..
T Consensus 486 TlSEa~kEa~~aA~~ 500 (506)
T KOG1335|consen 486 TLSEAFKEANMAAYD 500 (506)
T ss_pred cHHHHHHHHHHHhhc
Confidence 999999999887654
No 51
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=100.00 E-value=1.6e-36 Score=323.42 Aligned_cols=326 Identities=20% Similarity=0.224 Sum_probs=227.0
Q ss_pred cccccccceeeccccCCCCcccceec--cccccccccccccccc-------c--cc-CCCCCeEEEEcCchHHHHHHHHH
Q 011351 3 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY-------S--SF-ANENREFVIVGGGNAAGYAARTF 70 (488)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------~--~~-~~~~~~vvIIGgG~AGl~aA~~L 70 (488)
-.+|||+.+||++|.++|+.+|.|.. .+++++...|+..+.. . +. ....++|+||||||||++||..|
T Consensus 477 ~~~nPlp~icGrVC~h~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~~~kkVaIIGGGPAGLSAA~~L 556 (1012)
T TIGR03315 477 YDKNPLPAITGTICDHQCQYKCTRLDYDESVNIREMKKVAAEKGYDEYKTRWHKPQGKSSAHKVAVIGAGPAGLSAGYFL 556 (1012)
T ss_pred HHhCChhhHhhCcCCcchHHHhcCCCCCCCCcccHHHHHHHhhHHHhcCccCCCCCCCCCCCcEEEECCCHHHHHHHHHH
Confidence 46899999999999999999999987 8888888887776531 1 11 23457999999999999999999
Q ss_pred HHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCC
Q 011351 71 VEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK 150 (488)
Q Consensus 71 ~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~ 150 (488)
++.|+ +|+|+|+++..... . . +..+.. +++. +...+..+++...|++++++...
T Consensus 557 Ar~G~---~VTV~Ek~~~lGG~-l--~--~~IP~~----rlp~-------e~l~~~ie~l~~~GVe~~~g~~~------- 610 (1012)
T TIGR03315 557 ARAGH---PVTVFEKKEKPGGV-V--K--NIIPEF----RISA-------ESIQKDIELVKFHGVEFKYGCSP------- 610 (1012)
T ss_pred HHCCC---eEEEEecccccCce-e--e--eccccc----CCCH-------HHHHHHHHHHHhcCcEEEEeccc-------
Confidence 99987 89999998653211 0 0 011111 1110 00122345667789999886321
Q ss_pred cEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHH---hhhcCCeEEEECCCHHHHHHHHHHH
Q 011351 151 QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS---SLEKAKKVVVVGGGYIGMEVAAAAV 227 (488)
Q Consensus 151 ~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~---~~~~~~~vvVvG~G~~g~e~A~~l~ 227 (488)
.+.+++.+...||+||||||+.+...+.++|.. +++. ........+.. ....+++|+|||+|.+|+|+|..+.
T Consensus 611 -d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~-~~v~--~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~ 686 (1012)
T TIGR03315 611 -DLTVAELKNQGYKYVILAIGAWKHGPLRLEGGG-ERVL--KSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAAL 686 (1012)
T ss_pred -ceEhhhhhcccccEEEECCCCCCCCCCCcCCCC-ccee--eHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHH
Confidence 122233334679999999999854434444432 2332 22222222211 2346899999999999999999988
Q ss_pred hC-CC-cEEEEecCCc-CcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE--E------------EeCC
Q 011351 228 GW-KL-DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA--V------------KLED 290 (488)
Q Consensus 228 ~~-g~-~v~lv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~--v------------~l~~ 290 (488)
+. |. +|+++++++. .++. .. ..+.+.+ +.||+++++..+.+++ + +.+.. + ...+
T Consensus 687 Rl~Ga~kVtLVyRr~~~~Mpa-~~----eEl~~al-eeGVe~~~~~~p~~I~-~--g~l~v~~~~l~~~d~sGr~~~v~~ 757 (1012)
T TIGR03315 687 RVPGVEKVTVVYRRTKRYMPA-SR----EELEEAL-EDGVDFKELLSPESFE-D--GTLTCEVMKLGEPDASGRRRPVGT 757 (1012)
T ss_pred HhCCCceEEEEEccCcccccc-CH----HHHHHHH-HcCCEEEeCCceEEEE-C--CeEEEEEEEeecccCCCceeeecC
Confidence 76 64 7999998763 3432 22 2344433 5699999998888886 1 22211 1 1112
Q ss_pred C--cEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCC-CCCCCCCEEEEceecccCCccCCcccccccHHHHHHH
Q 011351 291 G--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQS 366 (488)
Q Consensus 291 g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~-~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~ 366 (488)
| .+++||.||+|+|..|+.++++..++..+ +|++.||++ ++|+.|+|||+|||+..+. .+..|+.+
T Consensus 758 Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~----------tVv~AIaq 827 (1012)
T TIGR03315 758 GETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPA----------TIVEAIAD 827 (1012)
T ss_pred CCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCcc----------HHHHHHHH
Confidence 3 36899999999999999999998888865 578999986 8999999999999986543 45679999
Q ss_pred HHHHHHHHhcC
Q 011351 367 AQHCIKALLSA 377 (488)
Q Consensus 367 g~~~a~~i~~~ 377 (488)
|+.||.+|++.
T Consensus 828 Gr~AA~nIl~~ 838 (1012)
T TIGR03315 828 GRKAANAILSR 838 (1012)
T ss_pred HHHHHHHHhcc
Confidence 99999999864
No 52
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=1.6e-36 Score=325.47 Aligned_cols=332 Identities=21% Similarity=0.250 Sum_probs=238.9
Q ss_pred cccccccceeeccccC--CCCcccceec---ccccccccccccccccc-------c--cCCCCCeEEEEcCchHHHHHHH
Q 011351 3 SVSNSLSFKHGLSLWC--PQSPSLHRIR---HSSAKNFQRRGFVVAYS-------S--FANENREFVIVGGGNAAGYAAR 68 (488)
Q Consensus 3 ~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~-------~--~~~~~~~vvIIGgG~AGl~aA~ 68 (488)
..+|||+.+||++|.+ +|+.+|.+.. .++.+....|+..+... | .....++|+|||||+||++||.
T Consensus 369 ~~~~p~p~~~grvC~~~~~Ce~~c~~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~~~V~IIGaGpAGl~aA~ 448 (752)
T PRK12778 369 KETSALPAVCGRVCPQEKQCESKCIHGKMGEEAVAIGYLERFVADYERESGNISVPEVAEKNGKKVAVIGSGPAGLSFAG 448 (752)
T ss_pred HhhCCchhHhcCcCCCcCchHHhcccCCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCEEEEECcCHHHHHHHH
Confidence 4689999999999996 8999999987 35777777776654311 1 1235679999999999999999
Q ss_pred HHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeC
Q 011351 69 TFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDI 148 (488)
Q Consensus 69 ~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~ 148 (488)
.|++.|+ +|+|+|+++..... +. +-.+. .+++. .......+++++.+++++.++.+
T Consensus 449 ~l~~~G~---~V~v~e~~~~~GG~---l~--~gip~----~rlp~-------~~~~~~~~~l~~~gv~~~~~~~v----- 504 (752)
T PRK12778 449 DLAKRGY---DVTVFEALHEIGGV---LK--YGIPE----FRLPK-------KIVDVEIENLKKLGVKFETDVIV----- 504 (752)
T ss_pred HHHHCCC---eEEEEecCCCCCCe---ee--ecCCC----CCCCH-------HHHHHHHHHHHHCCCEEECCCEE-----
Confidence 9999988 89999986542110 00 10111 11110 00122345677889999987543
Q ss_pred CCcEEEeCCCcEEEeccEEeccCCC-CCcCCCCCCCCCCcEEEecCHHHHHHHHH--------hhhcCCeEEEECCCHHH
Q 011351 149 EKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALIS--------SLEKAKKVVVVGGGYIG 219 (488)
Q Consensus 149 ~~~~v~~~~g~~i~yd~lVlAtG~~-~~~~~~~~g~~~~gv~~~~~~~~~~~~~~--------~~~~~~~vvVvG~G~~g 219 (488)
.+.+++++.....||+||||||+. ++ .++++|.+.+++++..++.....+.. ....+++|+|||+|.+|
T Consensus 505 -~~~v~~~~l~~~~ydavvlAtGa~~~~-~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a 582 (752)
T PRK12778 505 -GKTITIEELEEEGFKGIFIASGAGLPN-FMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTA 582 (752)
T ss_pred -CCcCCHHHHhhcCCCEEEEeCCCCCCC-CCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHH
Confidence 234555554456799999999984 55 45678888888887655443322211 12357899999999999
Q ss_pred HHHHHHHHhCCCc-EEEEecCCc-CcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC--------
Q 011351 220 MEVAAAAVGWKLD-TTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-------- 289 (488)
Q Consensus 220 ~e~A~~l~~~g~~-v~lv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~-------- 289 (488)
+|+|..+.++|.+ |+++++++. .++. ... .+ +.+++.||++++++.+.++..++++++.++.+.
T Consensus 583 ~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~----~~~-e~-~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~ 656 (752)
T PRK12778 583 MDSARTAKRLGAERVTIVYRRSEEEMPA----RLE-EV-KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPD 656 (752)
T ss_pred HHHHHHHHHcCCCeEEEeeecCcccCCC----CHH-HH-HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcC
Confidence 9999999999997 999998764 2321 111 12 346788999999999999976556666666542
Q ss_pred -CC-----------cEEEcCEEEEeecCccCChhhhhc-CCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCccc
Q 011351 290 -DG-----------STIDADTIVIGIGAKPTVSPFERV-GLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 355 (488)
Q Consensus 290 -~g-----------~~i~~D~vi~a~G~~p~~~~~~~~-gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~ 355 (488)
+| ++++||.||+|+|+.|+..++... ++..+ +|+|.||++++|+.|+|||+|||+..+.
T Consensus 657 ~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~~------- 729 (752)
T PRK12778 657 ASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGGA------- 729 (752)
T ss_pred CCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCCcH-------
Confidence 22 259999999999999998776553 67665 5789999999999999999999997432
Q ss_pred ccccHHHHHHHHHHHHHHHhc
Q 011351 356 RVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 356 ~~~~~~~A~~~g~~~a~~i~~ 376 (488)
.+..|..+|+.+|.+|..
T Consensus 730 ---~vv~Av~~G~~AA~~I~~ 747 (752)
T PRK12778 730 ---TVILAMGDGKRAAAAIDE 747 (752)
T ss_pred ---HHHHHHHHHHHHHHHHHH
Confidence 345688899999988864
No 53
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=100.00 E-value=2.6e-36 Score=307.67 Aligned_cols=337 Identities=20% Similarity=0.212 Sum_probs=233.4
Q ss_pred cccccccceeeccccCCCCcccceec--ccccccccccccccccc---------ccCCCCCeEEEEcCchHHHHHHHHHH
Q 011351 3 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAYS---------SFANENREFVIVGGGNAAGYAARTFV 71 (488)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---------~~~~~~~~vvIIGgG~AGl~aA~~L~ 71 (488)
-.+|||+.+||++|.++|+.+|.|.. .+++++...|+..+... +.....++|+|||||+||+++|..|+
T Consensus 84 ~~~~p~~~~~g~vC~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~ 163 (471)
T PRK12810 84 HQTNNFPEFTGRVCPAPCEGACTLNINFGPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLA 163 (471)
T ss_pred HHhCChhHHhcCcCCchhHHhccCCCCCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHH
Confidence 36899999999999999999999997 78888888877764321 11234579999999999999999999
Q ss_pred HcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc
Q 011351 72 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ 151 (488)
Q Consensus 72 ~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~ 151 (488)
+.|+ +|+|+|+++..... +. +-.+....+.. ......+++.+.+++++.++.+. .+...
T Consensus 164 ~~G~---~V~vie~~~~~GG~---l~--~gip~~~~~~~-----------~~~~~~~~~~~~gv~~~~~~~v~-~~~~~- 222 (471)
T PRK12810 164 RAGH---KVTVFERADRIGGL---LR--YGIPDFKLEKE-----------VIDRRIELMEAEGIEFRTNVEVG-KDITA- 222 (471)
T ss_pred hCCC---cEEEEecCCCCCce---ee--ecCCcccCCHH-----------HHHHHHHHHHhCCcEEEeCCEEC-CcCCH-
Confidence 9987 89999998654210 00 00010000000 01223456788899999876542 22111
Q ss_pred EEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHH--HHHH------hhhcCCeEEEECCCHHHHHHH
Q 011351 152 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD--ALIS------SLEKAKKVVVVGGGYIGMEVA 223 (488)
Q Consensus 152 ~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~--~~~~------~~~~~~~vvVvG~G~~g~e~A 223 (488)
+.....||+||+|||+.....+.++|.+.+++++..++.... .+.. ....+++++|||+|++|+|+|
T Consensus 223 -----~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A 297 (471)
T PRK12810 223 -----EELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCV 297 (471)
T ss_pred -----HHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHH
Confidence 111257999999999973334556777778877643222111 1111 123578999999999999999
Q ss_pred HHHHhCCC-cEEEEecCCcCcccccCH----HH-HHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-----CC-
Q 011351 224 AAAVGWKL-DTTIIFPENHLLQRLFTP----SL-AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----DG- 291 (488)
Q Consensus 224 ~~l~~~g~-~v~lv~~~~~~l~~~~~~----~~-~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~-----~g- 291 (488)
..+...|. +|++++..+......++. .. .....+.+++.||++++++.++++.. +++++.+|.+. +|
T Consensus 298 ~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~-~~g~v~~V~~~~~~~~~g~ 376 (471)
T PRK12810 298 GTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEG-ENGKVTGVKVVRTELGEGD 376 (471)
T ss_pred HHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEc-cCCEEEEEEEEEEEecCCC
Confidence 98888876 788766554332211010 00 11134557788999999999999974 35666655432 22
Q ss_pred --------cEEEcCEEEEeecCccCC-hhhhhcCCccc-CCCEEeC-CCCCCCCCCEEEEceecccCCccCCcccccccH
Q 011351 292 --------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVD-GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV 360 (488)
Q Consensus 292 --------~~i~~D~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~vd-~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~ 360 (488)
+++++|.||+++|.+|+. .+++.+++..+ +|.+.+| ++++|+.|+|||+|||+..+. .+
T Consensus 377 ~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~----------~~ 446 (471)
T PRK12810 377 FEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQS----------LV 446 (471)
T ss_pred ccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCch----------hH
Confidence 479999999999999985 47888888776 5779998 799999999999999997432 34
Q ss_pred HHHHHHHHHHHHHHhc
Q 011351 361 DHARQSAQHCIKALLS 376 (488)
Q Consensus 361 ~~A~~~g~~~a~~i~~ 376 (488)
..|..+|+.+|.+|..
T Consensus 447 ~~Av~~G~~AA~~i~~ 462 (471)
T PRK12810 447 VWAIAEGRQAARAIDA 462 (471)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5688888888888754
No 54
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=100.00 E-value=1.9e-35 Score=300.12 Aligned_cols=332 Identities=19% Similarity=0.201 Sum_probs=236.0
Q ss_pred cccccccceeecccc--CCCCcccceec--ccccccccccccccccc-----c----cCCCCCeEEEEcCchHHHHHHHH
Q 011351 3 SVSNSLSFKHGLSLW--CPQSPSLHRIR--HSSAKNFQRRGFVVAYS-----S----FANENREFVIVGGGNAAGYAART 69 (488)
Q Consensus 3 ~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~----~~~~~~~vvIIGgG~AGl~aA~~ 69 (488)
-.+|||+.+||++|. .+|+.+|.|.. .++.++...|+..+... + ...+.++|+|||||++|+++|..
T Consensus 80 ~~~np~~~~~grvC~~~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpaGl~aA~~ 159 (467)
T TIGR01318 80 HQTNTLPEICGRVCPQDRLCEGACTLNDEFGAVTIGNLERYITDTALAMGWRPDLSHVVPTGKRVAVIGAGPAGLACADI 159 (467)
T ss_pred HHhCCchHhhcccCCCCCChHHhCcCCCCCCCccHHHHHHHHHHHHHHhCCCCCCCCcCCCCCeEEEECCCHHHHHHHHH
Confidence 468999999999998 59999999997 78888888877765421 1 12345899999999999999999
Q ss_pred HHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCC
Q 011351 70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE 149 (488)
Q Consensus 70 L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~ 149 (488)
|++.|+ +|+|+|+.+.... ++.. .....+++ .+......+++++.|++++.++.|..
T Consensus 160 l~~~G~---~V~i~e~~~~~gG--------~l~~-gip~~~~~-------~~~~~~~~~~~~~~Gv~~~~~~~v~~---- 216 (467)
T TIGR01318 160 LARAGV---QVVVFDRHPEIGG--------LLTF-GIPSFKLD-------KAVLSRRREIFTAMGIEFHLNCEVGR---- 216 (467)
T ss_pred HHHcCC---eEEEEecCCCCCc--------eeee-cCccccCC-------HHHHHHHHHHHHHCCCEEECCCEeCC----
Confidence 999987 7999998865321 1100 00000110 00012235677889999998876521
Q ss_pred CcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHH--HHHHH---------hhhcCCeEEEECCCHH
Q 011351 150 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA--DALIS---------SLEKAKKVVVVGGGYI 218 (488)
Q Consensus 150 ~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~--~~~~~---------~~~~~~~vvVvG~G~~ 218 (488)
.+.+++ ....||.||+|||+.+....+++|.+.+++++..++... ..+.. ....+++++|+|+|.+
T Consensus 217 --~~~~~~-~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~ 293 (467)
T TIGR01318 217 --DISLDD-LLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDT 293 (467)
T ss_pred --ccCHHH-HHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHH
Confidence 122222 124799999999998754456788888888765322111 11100 0124689999999999
Q ss_pred HHHHHHHHHhCCC-cEEEEecCCcC-cccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-------
Q 011351 219 GMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE------- 289 (488)
Q Consensus 219 g~e~A~~l~~~g~-~v~lv~~~~~~-l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~------- 289 (488)
|+++|..+.++|. +|+++++++.. ++. .+. . .+.+++.||++++++.++++..++++++.++.+.
T Consensus 294 a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~-~~~----e-~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~ 367 (467)
T TIGR01318 294 AMDCVRTAIRLGAASVTCAYRRDEANMPG-SRR----E-VANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEP 367 (467)
T ss_pred HHHHHHHHHHcCCCeEEEEEecCcccCCC-CHH----H-HHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEeccc
Confidence 9999999999985 79999987653 332 222 2 2346788999999999999975555666555441
Q ss_pred --C-----------CcEEEcCEEEEeecCccCC-hhhhhcCCccc-CCCEEeC----CCCCCCCCCEEEEceecccCCcc
Q 011351 290 --D-----------GSTIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVD----GQFRTRMPGIFAIGDVAAFPLKM 350 (488)
Q Consensus 290 --~-----------g~~i~~D~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~vd----~~~~t~~~~Ifa~GD~a~~~~~~ 350 (488)
+ .+++++|.||+++|++|+. .+++..++..+ +|++.|| .+++|+.|+|||+|||+..+.
T Consensus 368 ~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~-- 445 (467)
T TIGR01318 368 DADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGAD-- 445 (467)
T ss_pred CCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCcc--
Confidence 1 2369999999999999984 56777777765 5779999 688999999999999987432
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhc
Q 011351 351 YDRTARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 351 ~~~~~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
.+..|..+|+.+|.+|..
T Consensus 446 --------~~~~Ai~~G~~aA~~i~~ 463 (467)
T TIGR01318 446 --------LVVTAVAEGRQAAQGILD 463 (467)
T ss_pred --------HHHHHHHHHHHHHHHHHH
Confidence 345689999999998863
No 55
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=100.00 E-value=1.8e-35 Score=311.29 Aligned_cols=332 Identities=23% Similarity=0.264 Sum_probs=229.2
Q ss_pred cccccccceeeccccCCCCcccceec--cccccccccccccccc-------cc--cCCCCCeEEEEcCchHHHHHHHHHH
Q 011351 3 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY-------SS--FANENREFVIVGGGNAAGYAARTFV 71 (488)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------~~--~~~~~~~vvIIGgG~AGl~aA~~L~ 71 (488)
-.+|||+.++|++|.++|+..|.+.. .++.+....|+..+.. .| .....++|+|||||+||+++|..|+
T Consensus 134 ~~~~p~p~~~grvC~~~Ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~k~VaIIGaGpAGl~aA~~La 213 (652)
T PRK12814 134 KETIPLPGILGRICPAPCEEACRRHGVDEPVSICALKRYAADRDMESAERYIPERAPKSGKKVAIIGAGPAGLTAAYYLL 213 (652)
T ss_pred HhhCCccceeeCCcCchhhHHHcCCCCCCCcchhHHHHHHHHHHHhcCcccCCCCCCCCCCEEEEECCCHHHHHHHHHHH
Confidence 46899999999999999999999987 6666777777766421 11 1234579999999999999999999
Q ss_pred HcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc
Q 011351 72 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ 151 (488)
Q Consensus 72 ~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~ 151 (488)
+.|+ +|+|+|+++..... +. +..+. .+++. .......+.+.+.|+++++++.+ .++
T Consensus 214 ~~G~---~Vtv~e~~~~~GG~---l~--~gip~----~~~~~-------~~~~~~~~~l~~~Gv~i~~~~~v-~~d---- 269 (652)
T PRK12814 214 RKGH---DVTIFDANEQAGGM---MR--YGIPR----FRLPE-------SVIDADIAPLRAMGAEFRFNTVF-GRD---- 269 (652)
T ss_pred HCCC---cEEEEecCCCCCce---ee--ecCCC----CCCCH-------HHHHHHHHHHHHcCCEEEeCCcc-cCc----
Confidence 9987 89999998764211 00 00010 01110 00112345667789999887543 222
Q ss_pred EEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCC
Q 011351 152 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL 231 (488)
Q Consensus 152 ~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~ 231 (488)
+++++.. ..||+|+||||+.+...+.++|.+.++++...++............+++++|||+|.+|+|+|..+.+.|.
T Consensus 270 -v~~~~~~-~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga 347 (652)
T PRK12814 270 -ITLEELQ-KEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGA 347 (652)
T ss_pred -cCHHHHH-hhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 2222222 35999999999986444566777777766432221111111123468999999999999999999999986
Q ss_pred -cEEEEecCCc-CcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCC-cEEEEEeC---------------CCc-
Q 011351 232 -DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLE---------------DGS- 292 (488)
Q Consensus 232 -~v~lv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~-~v~~v~l~---------------~g~- 292 (488)
+|+++++.+. .++. .+ ..+.+. .+.||++++++.+.++...+++ .+..+.+. +|+
T Consensus 348 ~~Vtlv~r~~~~~mpa-~~----~ei~~a-~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~ 421 (652)
T PRK12814 348 ESVTILYRRTREEMPA-NR----AEIEEA-LAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSE 421 (652)
T ss_pred CeEEEeeecCcccCCC-CH----HHHHHH-HHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCce
Confidence 5999998764 3432 22 233333 3569999999999998753222 12222221 122
Q ss_pred -EEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCC-CCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHH
Q 011351 293 -TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 369 (488)
Q Consensus 293 -~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~-~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~ 369 (488)
++++|.||+++|..|+.++++..++..+ +|+|.||+ +++|+.|+|||+|||+..+. .+..|..+|+.
T Consensus 422 ~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~----------~v~~Ai~~G~~ 491 (652)
T PRK12814 422 FTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGAD----------IAINAVEQGKR 491 (652)
T ss_pred EEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCch----------HHHHHHHHHHH
Confidence 5999999999999999999888888876 57899997 68999999999999986532 45568888888
Q ss_pred HHHHHhc
Q 011351 370 CIKALLS 376 (488)
Q Consensus 370 ~a~~i~~ 376 (488)
+|.+|..
T Consensus 492 AA~~I~~ 498 (652)
T PRK12814 492 AAHAIDL 498 (652)
T ss_pred HHHHHHH
Confidence 8888743
No 56
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=100.00 E-value=2.4e-35 Score=320.96 Aligned_cols=332 Identities=17% Similarity=0.194 Sum_probs=233.8
Q ss_pred cccccccceeeccccC--CCCcccceec--ccccccccccccccccc------cc-CCCCCeEEEEcCchHHHHHHHHHH
Q 011351 3 SVSNSLSFKHGLSLWC--PQSPSLHRIR--HSSAKNFQRRGFVVAYS------SF-ANENREFVIVGGGNAAGYAARTFV 71 (488)
Q Consensus 3 ~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~-~~~~~~vvIIGgG~AGl~aA~~L~ 71 (488)
..+|||+.+||++|++ +|+.+|.+.. .++.++...|+..+... |. ..+.++|+|||||||||+||..|+
T Consensus 371 ~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~pv~I~~ler~~~d~~~~~~~~~~~~~~~~~kVaIIG~GPAGLsaA~~La 450 (1006)
T PRK12775 371 YEASIFPSICGRVCPQETQCEAQCIIAKKHESVGIGRLERFVGDNARAKPVKPPRFSKKLGKVAICGSGPAGLAAAADLV 450 (1006)
T ss_pred HHhCChHHHhcCcCCCCCCHHHhCcCCCCCCCeeecHHHHHHHHHHHHcCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH
Confidence 4689999999999998 8999999998 78888888888765421 11 234689999999999999999999
Q ss_pred HcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc
Q 011351 72 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ 151 (488)
Q Consensus 72 ~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~ 151 (488)
+.|+ +|+|+|+.+..... +. +-.+.. +++ .+......+++++.|++++.++.+ + +
T Consensus 451 ~~G~---~VtV~E~~~~~GG~---l~--~gip~~----rl~-------~e~~~~~~~~l~~~Gv~~~~~~~v-g-----~ 505 (1006)
T PRK12775 451 KYGV---DVTVYEALHVVGGV---LQ--YGIPSF----RLP-------RDIIDREVQRLVDIGVKIETNKVI-G-----K 505 (1006)
T ss_pred HcCC---cEEEEecCCCCcce---ee--ccCCcc----CCC-------HHHHHHHHHHHHHCCCEEEeCCcc-C-----C
Confidence 9988 89999987653210 00 001111 111 001123456778899999987533 1 2
Q ss_pred EEEeCCCc-EEEeccEEeccCCC-CCcCCCCCCCCCCcEEEecCHHHHHHHHH---------hhhcCCeEEEECCCHHHH
Q 011351 152 TLITNSGK-LLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALIS---------SLEKAKKVVVVGGGYIGM 220 (488)
Q Consensus 152 ~v~~~~g~-~i~yd~lVlAtG~~-~~~~~~~~g~~~~gv~~~~~~~~~~~~~~---------~~~~~~~vvVvG~G~~g~ 220 (488)
.+++++-. ...||+||||||+. ++ .++++|.+.+++++..++.....+.. ....+++|+|||+|.+|+
T Consensus 506 ~~~~~~l~~~~~yDaViIATGa~~pr-~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~ 584 (1006)
T PRK12775 506 TFTVPQLMNDKGFDAVFLGVGAGAPT-FLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAM 584 (1006)
T ss_pred ccCHHHHhhccCCCEEEEecCCCCCC-CCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHH
Confidence 22222211 24699999999995 54 46678888888877654443332211 123579999999999999
Q ss_pred HHHHHHHhCCCc-EEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC----------
Q 011351 221 EVAAAAVGWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---------- 289 (488)
Q Consensus 221 e~A~~l~~~g~~-v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~---------- 289 (488)
++|..+.++|.+ |+++.+....- ++.. ... .+.+++.||++++++.++++..++++++.++.+.
T Consensus 585 D~A~~a~rlGa~~Vtiv~rr~~~e---m~a~-~~e-~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~ 659 (1006)
T PRK12775 585 DCLRVAKRLGAPTVRCVYRRSEAE---APAR-IEE-IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEK 659 (1006)
T ss_pred HHHHHHHHcCCCEEEEEeecCccc---CCCC-HHH-HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCC
Confidence 999999999875 78887654221 1111 111 2356788999999999999976556777666442
Q ss_pred -------CC--cEEEcCEEEEeecCccCChhhhh-cCCccc-CCCEEeCC-----CCCCCCCCEEEEceecccCCccCCc
Q 011351 290 -------DG--STIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDG-----QFRTRMPGIFAIGDVAAFPLKMYDR 353 (488)
Q Consensus 290 -------~g--~~i~~D~vi~a~G~~p~~~~~~~-~gl~~~-~g~i~vd~-----~~~t~~~~Ifa~GD~a~~~~~~~~~ 353 (488)
+| .++++|.||+++|+.|+..++.. .++..+ +|.|.+|+ +++|++|+|||+|||+..+.
T Consensus 660 Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~~----- 734 (1006)
T PRK12775 660 GRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGGA----- 734 (1006)
T ss_pred CCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCcc-----
Confidence 12 25999999999999999876654 366654 57799996 78999999999999996432
Q ss_pred ccccccHHHHHHHHHHHHHHHh
Q 011351 354 TARVEHVDHARQSAQHCIKALL 375 (488)
Q Consensus 354 ~~~~~~~~~A~~~g~~~a~~i~ 375 (488)
.+..|..+|+.+|.+|.
T Consensus 735 -----~vv~Ai~~Gr~AA~~I~ 751 (1006)
T PRK12775 735 -----TVILAMGAGRRAARSIA 751 (1006)
T ss_pred -----HHHHHHHHHHHHHHHHH
Confidence 34457777777777764
No 57
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=4.5e-34 Score=276.27 Aligned_cols=285 Identities=23% Similarity=0.319 Sum_probs=205.9
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCccc-ccCCCCCCCCHhHH
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPEWY 130 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 130 (488)
+||+|||||+||++||..|++.|. +|+|||+++... . +... .....++++.. ..+.+......+++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~gg-~-------~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~ 67 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANL---KTLIIEGMEPGG-Q-------LTTT--TEVENYPGFPEGISGPELMEKMKEQA 67 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCC---CEEEEeccCCCc-c-------eeec--ccccccCCCCCCCChHHHHHHHHHHH
Confidence 589999999999999999999987 799999876210 0 0000 00011111110 01111123445667
Q ss_pred HHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCC---CcEEEecCHHHHHHHHHhhh
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSLE 205 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~---~gv~~~~~~~~~~~~~~~~~ 205 (488)
++.+++++. ++|+++++.++ .+++.+++++.||+||+|||+.+. .+.+++... .++++..... ....
T Consensus 68 ~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~-~~~i~g~~~~~~~~~~~~~~~~------~~~~ 139 (300)
T TIGR01292 68 VKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASAR-KLGIPGEDEFLGRGVSYCATCD------GPFF 139 (300)
T ss_pred HHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcc-cCCCCChhhcCCccEEEeeecC------hhhc
Confidence 788999998 79999998764 566777788999999999999876 344555321 2333222111 1234
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHc-CcEEEcCCeEEEEEeCCCCcEE
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVA 284 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~~~v~ 284 (488)
.+++++|+|+|.+|+|+|..|.+.+.+|+++.+.+.+.. . ..+.+.+++. ||++++++++++++.+ +++.
T Consensus 140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~---~----~~~~~~l~~~~gv~~~~~~~v~~i~~~--~~~~ 210 (300)
T TIGR01292 140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA---E----KILLDRLRKNPNIEFLWNSTVKEIVGD--NKVE 210 (300)
T ss_pred CCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc---C----HHHHHHHHhCCCeEEEeccEEEEEEcc--CcEE
Confidence 678999999999999999999999999999999876532 2 3455667777 9999999999999843 3444
Q ss_pred EEEeC-----CCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccc
Q 011351 285 AVKLE-----DGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE 358 (488)
Q Consensus 285 ~v~l~-----~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~ 358 (488)
.+.+. +++++++|.+++|+|++|+.++++.+ +..+ +|++.||++++|++||||++|||+... ..
T Consensus 211 ~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~-~~~~~~g~i~v~~~~~t~~~~vya~GD~~~~~---------~~ 280 (300)
T TIGR01292 211 GVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGL-LELDEGGYIVTDEGMRTSVPGVFAAGDVRDKG---------YR 280 (300)
T ss_pred EEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHh-heecCCCcEEECCCCccCCCCEEEeecccCcc---------hh
Confidence 45442 23579999999999999998888877 5544 578999999999999999999999842 12
Q ss_pred cHHHHHHHHHHHHHHHhc
Q 011351 359 HVDHARQSAQHCIKALLS 376 (488)
Q Consensus 359 ~~~~A~~~g~~~a~~i~~ 376 (488)
.+..|..+|+.+|.+|..
T Consensus 281 ~~~~A~~~g~~aa~~i~~ 298 (300)
T TIGR01292 281 QAVTAAGDGCIAALSAER 298 (300)
T ss_pred hhhhhhhhHHHHHHHHHh
Confidence 566799999999998863
No 58
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=100.00 E-value=1.9e-34 Score=305.02 Aligned_cols=332 Identities=19% Similarity=0.220 Sum_probs=234.0
Q ss_pred cccccccceeecccc--CCCCcccceec--ccccccccccccccccc-----c----cCCCCCeEEEEcCchHHHHHHHH
Q 011351 3 SVSNSLSFKHGLSLW--CPQSPSLHRIR--HSSAKNFQRRGFVVAYS-----S----FANENREFVIVGGGNAAGYAART 69 (488)
Q Consensus 3 ~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~----~~~~~~~vvIIGgG~AGl~aA~~ 69 (488)
..+|||+.++|++|. .+|+.+|.+.. .++.++...|+..+... | ...+.++|+|||||+|||+||..
T Consensus 266 ~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~I~~l~r~~~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAGLsaA~~ 345 (654)
T PRK12769 266 HQTNSLPEITGRVCPQDRLCEGACTLRDEYGAVTIGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACADV 345 (654)
T ss_pred HHhCCchhHhcccCCCCCChHHhccCCCCCCCeecCHHHHHHHHHHHHhCCCCCCcccccCCCEEEEECCCHHHHHHHHH
Confidence 468999999999998 58999999987 78888888887765421 1 12346899999999999999999
Q ss_pred HHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCC
Q 011351 70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE 149 (488)
Q Consensus 70 L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~ 149 (488)
|++.|+ +|+|+|+.+..... +. +-.+. .+++ .....+..+++++.|++++.++.|.
T Consensus 346 L~~~G~---~V~V~E~~~~~GG~---l~--~gip~----~~l~-------~~~~~~~~~~~~~~Gv~~~~~~~v~----- 401 (654)
T PRK12769 346 LARNGV---AVTVYDRHPEIGGL---LT--FGIPA----FKLD-------KSLLARRREIFSAMGIEFELNCEVG----- 401 (654)
T ss_pred HHHCCC---eEEEEecCCCCCce---ee--ecCCC----ccCC-------HHHHHHHHHHHHHCCeEEECCCEeC-----
Confidence 999987 79999987653210 00 00010 0110 0001223466778899999876552
Q ss_pred CcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHH--HHHHHHH---------hhhcCCeEEEECCCHH
Q 011351 150 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVA--DADALIS---------SLEKAKKVVVVGGGYI 218 (488)
Q Consensus 150 ~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~--~~~~~~~---------~~~~~~~vvVvG~G~~ 218 (488)
..+.+++. ...||+|++|||+.......+++.+.+|++....+. ....... ....+++++|||+|.+
T Consensus 402 -~~i~~~~~-~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~ 479 (654)
T PRK12769 402 -KDISLESL-LEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDT 479 (654)
T ss_pred -CcCCHHHH-HhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHH
Confidence 11111111 136999999999875434556777778876532111 0111110 0124689999999999
Q ss_pred HHHHHHHHHhCCC-cEEEEecCCcC-cccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-------
Q 011351 219 GMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE------- 289 (488)
Q Consensus 219 g~e~A~~l~~~g~-~v~lv~~~~~~-l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~------- 289 (488)
|+|+|..+.++|. +|+++++.+.. ++. .+ ...+.+++.||++++++.++++..++++++.+|.+.
T Consensus 480 a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~--~~----~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~ 553 (654)
T PRK12769 480 AMDCVRTALRHGASNVTCAYRRDEANMPG--SK----KEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEP 553 (654)
T ss_pred HHHHHHHHHHcCCCeEEEeEecCCCCCCC--CH----HHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCc
Confidence 9999999888886 69999887653 331 12 223457888999999999999975556777666541
Q ss_pred --CC-----------cEEEcCEEEEeecCccCC-hhhhhcCCccc-CCCEEeCC----CCCCCCCCEEEEceecccCCcc
Q 011351 290 --DG-----------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVDG----QFRTRMPGIFAIGDVAAFPLKM 350 (488)
Q Consensus 290 --~g-----------~~i~~D~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~vd~----~~~t~~~~Ifa~GD~a~~~~~~ 350 (488)
+| .++++|.||+|+|+.|+. .+++..+++.+ +|.|.||+ +++|+.|+|||+||++..+.
T Consensus 554 ~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~-- 631 (654)
T PRK12769 554 DAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGAD-- 631 (654)
T ss_pred CCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCc--
Confidence 22 259999999999999985 56788888876 57799986 48999999999999987543
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhc
Q 011351 351 YDRTARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 351 ~~~~~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
.+..|+.+|+.+|++|..
T Consensus 632 --------~vv~Ai~~Gr~AA~~I~~ 649 (654)
T PRK12769 632 --------LVVTAMAEGRHAAQGIID 649 (654)
T ss_pred --------HHHHHHHHHHHHHHHHHH
Confidence 455689999999998864
No 59
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=3.8e-34 Score=294.69 Aligned_cols=269 Identities=26% Similarity=0.372 Sum_probs=196.2
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC-CCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCH
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA-PYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (488)
...+||+|||||+||++||.+|++.|. +++||++.... ......+. ++.+.....+........
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~---~v~li~~~~GG~~~~~~~~~------------~~~~~~~~~~~~l~~~l~ 274 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGL---RTAMVAERIGGQVKDTVGIE------------NLISVPYTTGSQLAANLE 274 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCccccCcCcc------------cccccCCCCHHHHHHHHH
Confidence 446899999999999999999999987 89999753211 01101110 111111111111123345
Q ss_pred hHHHHCCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHHHH
Q 011351 128 EWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALIS 202 (488)
Q Consensus 128 ~~~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~~ 202 (488)
+++++++++++.+++|++++.+. ..+++.+|+.+.||+||+|||+.++. +.++|.. ..++.+.... ..
T Consensus 275 ~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~-~~ipG~~~~~~~~v~~~~~~------~~ 347 (515)
T TIGR03140 275 EHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRK-LGVPGEKEYIGKGVAYCPHC------DG 347 (515)
T ss_pred HHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCC-CCCCCHHHcCCCeEEEeecc------Ch
Confidence 66677899999988999998765 46677788889999999999998763 4455531 2234333211 11
Q ss_pred hhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCC
Q 011351 203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDG 281 (488)
Q Consensus 203 ~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~ 281 (488)
....+++++|||+|++|+|+|..|+..+.+|+++++.+.+.. ...+.+.+++ .||++++++.++++..+ ++
T Consensus 348 ~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~-------~~~l~~~l~~~~gV~i~~~~~v~~i~~~-~~ 419 (515)
T TIGR03140 348 PFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA-------DKVLQDKLKSLPNVDILTSAQTTEIVGD-GD 419 (515)
T ss_pred hhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------hHHHHHHHhcCCCCEEEECCeeEEEEcC-CC
Confidence 234689999999999999999999999999999998876643 2345666666 59999999999999743 45
Q ss_pred cEEEEEeCC---C--cEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCC
Q 011351 282 RVAAVKLED---G--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPL 348 (488)
Q Consensus 282 ~v~~v~l~~---g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~ 348 (488)
++..+.+.+ | +++++|.|++++|.+|++++++.. +..+ +|+|.||+++||++|||||+|||+..+.
T Consensus 420 ~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~-~~~~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~ 491 (515)
T TIGR03140 420 KVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDA-VELNRRGEIVIDERGRTSVPGIFAAGDVTTVPY 491 (515)
T ss_pred EEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhh-cccCCCCeEEECCCCCCCCCCEEEcccccCCcc
Confidence 665676643 2 469999999999999999998776 6654 5789999999999999999999998654
No 60
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=100.00 E-value=4.1e-34 Score=291.48 Aligned_cols=337 Identities=19% Similarity=0.238 Sum_probs=228.3
Q ss_pred cccccccceeeccccCCCCcccceec--cccccccccccccccc------c---ccCCCCCeEEEEcCchHHHHHHHHHH
Q 011351 3 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY------S---SFANENREFVIVGGGNAAGYAARTFV 71 (488)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~---~~~~~~~~vvIIGgG~AGl~aA~~L~ 71 (488)
-++|||+.++|++|.++|+.+|++.. .++.++...|+..+.. . +.....++|+|||||+||+++|..|+
T Consensus 84 ~~~~p~p~~~grvC~~~Ce~~C~~~~~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIGaG~aGl~aA~~L~ 163 (485)
T TIGR01317 84 HATNNFPEFTGRVCPAPCEGACTLGISEDPVGIKSIERIIIDKGFQEGWVQPRPPSKRTGKKVAVVGSGPAGLAAADQLN 163 (485)
T ss_pred HhhCCchhHHhCcCChhhHHhccCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCcHHHHHHHHHHH
Confidence 36899999999999999999999997 6777777766664321 1 11234479999999999999999999
Q ss_pred HcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc
Q 011351 72 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ 151 (488)
Q Consensus 72 ~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~ 151 (488)
+.|+ +|+|+|+++..... +. +-.+.......+ .....+++++.|++++.++.+. .+...
T Consensus 164 ~~g~---~V~v~e~~~~~gG~---l~--~gip~~~~~~~~-----------~~~~~~~~~~~Gv~~~~~~~v~-~~~~~- 222 (485)
T TIGR01317 164 RAGH---TVTVFEREDRCGGL---LM--YGIPNMKLDKAI-----------VDRRIDLLSAEGIDFVTNTEIG-VDISA- 222 (485)
T ss_pred HcCC---eEEEEecCCCCCce---ee--ccCCCccCCHHH-----------HHHHHHHHHhCCCEEECCCEeC-CccCH-
Confidence 9987 89999998753210 00 000000000000 1223467788999999886653 22111
Q ss_pred EEEeCCCcEEEeccEEeccCCC-CCcCCCCCCCCCCcEEEecCHH-HHHHHH---------HhhhcCCeEEEECCCHHHH
Q 011351 152 TLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVA-DADALI---------SSLEKAKKVVVVGGGYIGM 220 (488)
Q Consensus 152 ~v~~~~g~~i~yd~lVlAtG~~-~~~~~~~~g~~~~gv~~~~~~~-~~~~~~---------~~~~~~~~vvVvG~G~~g~ 220 (488)
+.....||+|++|||+. +. .++++|.+.+++++...+. +..... .....+++|+|||+|++|+
T Consensus 223 -----~~~~~~~d~VilAtGa~~~~-~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~ 296 (485)
T TIGR01317 223 -----DELKEQFDAVVLAGGATKPR-DLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGA 296 (485)
T ss_pred -----HHHHhhCCEEEEccCCCCCC-cCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHH
Confidence 11235799999999998 54 4567887788888653222 111110 1113579999999999999
Q ss_pred HHHHHHHhCC-CcEEEEecCCcCcccccC----H------HHHHHHHHHHHHcCcEE-EcCCeEEEEEeCCCCcEEEEEe
Q 011351 221 EVAAAAVGWK-LDTTIIFPENHLLQRLFT----P------SLAQRYEQLYQQNGVKF-VKGASIKNLEAGSDGRVAAVKL 288 (488)
Q Consensus 221 e~A~~l~~~g-~~v~lv~~~~~~l~~~~~----~------~~~~~~~~~l~~~GV~v-~~~~~v~~i~~~~~~~v~~v~l 288 (488)
|+|..+.+++ .+|+++++.+.++..... + +.....++..+..||.+ ++++.+.++..++++++.++.+
T Consensus 297 d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~ 376 (485)
T TIGR01317 297 DCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRT 376 (485)
T ss_pred HHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEE
Confidence 9988877776 479999888765532111 0 11222333334457654 5677788887544466666553
Q ss_pred --------CCC-----------cEEEcCEEEEeecCc-cCChhhhhcCCccc-CCCEE-eCCCCCCCCCCEEEEceeccc
Q 011351 289 --------EDG-----------STIDADTIVIGIGAK-PTVSPFERVGLNSS-VGGIQ-VDGQFRTRMPGIFAIGDVAAF 346 (488)
Q Consensus 289 --------~~g-----------~~i~~D~vi~a~G~~-p~~~~~~~~gl~~~-~g~i~-vd~~~~t~~~~Ifa~GD~a~~ 346 (488)
++| +++++|.||+++|.. |++.+++..+++.+ +|.+. +|++++|+.|+|||+|||+..
T Consensus 377 ~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g 456 (485)
T TIGR01317 377 VRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRG 456 (485)
T ss_pred EEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCC
Confidence 133 269999999999996 88888888888755 56774 457899999999999999864
Q ss_pred CCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351 347 PLKMYDRTARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 347 ~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
+. ....|..+|+.+|.+|..
T Consensus 457 ~~----------~~~~Av~~G~~AA~~i~~ 476 (485)
T TIGR01317 457 QS----------LIVWAINEGRKAAAAVDR 476 (485)
T ss_pred cH----------HHHHHHHHHHHHHHHHHH
Confidence 32 344578888888888753
No 61
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=6.5e-34 Score=277.14 Aligned_cols=274 Identities=20% Similarity=0.280 Sum_probs=192.9
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCccc-ccCCCCCCCC
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQT 126 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 126 (488)
+...+||+|||||||||+||..|+++|+ ++++||.....+.. .... ...++++... ..+.....+.
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~---~~~~ie~~~~gg~~--~~~~--------~~~~~~~~~~~~~~~~~~~~~ 69 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAARANL---QPVLITGMEKGGQL--TTTT--------EVENWPGDPNDLTGPLLMERM 69 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCC---CeEEEEeecCCCce--ecCc--------eECCCCCCCCCCCHHHHHHHH
Confidence 3457899999999999999999999987 79999854321110 0000 0011111100 0000111223
Q ss_pred HhHHHHCCCeEEeCCcEEEEeCCCcEEEeC-CCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHHHH
Q 011351 127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITN-SGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALIS 202 (488)
Q Consensus 127 ~~~~~~~~i~~~~~~~v~~id~~~~~v~~~-~g~~i~yd~lVlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~~ 202 (488)
.+....++++++.+ +|..++...+.+++. +...+.||+||||||+.++ .|++++.+ ..+++.... +..
T Consensus 70 ~~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~-~~~i~g~~~~~~~~v~~~~~------~~~ 141 (321)
T PRK10262 70 HEHATKFETEIIFD-HINKVDLQNRPFRLTGDSGEYTCDALIIATGASAR-YLGLPSEEAFKGRGVSACAT------CDG 141 (321)
T ss_pred HHHHHHCCCEEEee-EEEEEEecCCeEEEEecCCEEEECEEEECCCCCCC-CCCCCCHHHcCCCcEEEeec------CCH
Confidence 44555677777764 677888766654332 2336899999999999986 45555532 223333321 112
Q ss_pred hhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCc
Q 011351 203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR 282 (488)
Q Consensus 203 ~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~ 282 (488)
....+++++|||+|.+|+|+|..|++.+.+|+++++.+.+. .++.+.+.+.+.+++.||++++++.+++++.+ ++.
T Consensus 142 ~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~---~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~-~~~ 217 (321)
T PRK10262 142 FFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTGD-QMG 217 (321)
T ss_pred HHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC---CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcC-Ccc
Confidence 23468999999999999999999999999999999987653 24667788888899999999999999999853 334
Q ss_pred EEEEEeCCC------cEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCC-----CCCCCCCCEEEEceecccC
Q 011351 283 VAAVKLEDG------STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG-----QFRTRMPGIFAIGDVAAFP 347 (488)
Q Consensus 283 v~~v~l~~g------~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~-----~~~t~~~~Ifa~GD~a~~~ 347 (488)
+..+++.++ +++++|.|++++|.+|+..+++. ++..++|+|.||+ +++|++|||||+|||+..+
T Consensus 218 ~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~-~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~ 292 (321)
T PRK10262 218 VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEG-QLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHI 292 (321)
T ss_pred EEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhc-cccccCCEEEECCCCcccccccCCCCEEECeeccCCC
Confidence 555665432 37999999999999999887654 5666678899997 7899999999999999754
No 62
>PRK13984 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.7e-33 Score=296.16 Aligned_cols=327 Identities=20% Similarity=0.216 Sum_probs=222.7
Q ss_pred ccccccceeeccccCCCCcccceec--cccccccccccccccc----------cccCCCCCeEEEEcCchHHHHHHHHHH
Q 011351 4 VSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY----------SSFANENREFVIVGGGNAAGYAARTFV 71 (488)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----------~~~~~~~~~vvIIGgG~AGl~aA~~L~ 71 (488)
.+|||+.+||++|+++|+.+|.+.. .++.++...|+..+.. .+...+.++|+|||+|+||+++|..|+
T Consensus 224 ~~np~~~~~g~vC~~~Ce~~C~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIGaG~aGl~aA~~L~ 303 (604)
T PRK13984 224 KTNPLSMVCGRVCTHKCETVCSIGHRGEPIAIRWLKRYIVDNVPVEKYSEILDDEPEKKNKKVAIVGSGPAGLSAAYFLA 303 (604)
T ss_pred hcCCccchhhCcCCchHHHhhcccCCCCCeEeCcHHHHHHhHHHHcCcccccCCCcccCCCeEEEECCCHHHHHHHHHHH
Confidence 4799999999999999999999986 6666666555444321 111345689999999999999999999
Q ss_pred HcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc
Q 011351 72 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ 151 (488)
Q Consensus 72 ~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~ 151 (488)
+.|+ +|+|+|+++..... +. +..+....+..+ ..+..+++++.+++++.++.|.. +
T Consensus 304 ~~G~---~v~vie~~~~~gG~---~~--~~i~~~~~~~~~-----------~~~~~~~~~~~gv~~~~~~~v~~-~---- 359 (604)
T PRK13984 304 TMGY---EVTVYESLSKPGGV---MR--YGIPSYRLPDEA-----------LDKDIAFIEALGVKIHLNTRVGK-D---- 359 (604)
T ss_pred HCCC---eEEEEecCCCCCce---Ee--ecCCcccCCHHH-----------HHHHHHHHHHCCcEEECCCEeCC-c----
Confidence 9987 89999988754211 00 101111111000 12234677888999998866531 1
Q ss_pred EEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhh-------hcCCeEEEECCCHHHHHHHH
Q 011351 152 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL-------EKAKKVVVVGGGYIGMEVAA 224 (488)
Q Consensus 152 ~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~-------~~~~~vvVvG~G~~g~e~A~ 224 (488)
+..++ ....||+||+|||+.....++++|.+.++++... .....+...+ ..+++++|||||.+|+|+|.
T Consensus 360 -~~~~~-~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~--~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~ 435 (604)
T PRK13984 360 -IPLEE-LREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQAL--PLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIAR 435 (604)
T ss_pred -CCHHH-HHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHH--HHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHH
Confidence 11111 1257999999999875334566777667766432 2222222211 23689999999999999999
Q ss_pred HHHhCCC------cEEEEecC--CcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-------
Q 011351 225 AAVGWKL------DTTIIFPE--NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE------- 289 (488)
Q Consensus 225 ~l~~~g~------~v~lv~~~--~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~------- 289 (488)
.+.+++. +|+++... ...++ ... ..+.+ +.+.||+++++..++++.. +++++..+.+.
T Consensus 436 ~l~r~~~~~~g~~~V~v~~~~r~~~~~~----~~~-~e~~~-~~~~GV~i~~~~~~~~i~~-~~g~v~~v~~~~~~~~~~ 508 (604)
T PRK13984 436 SMARLQKMEYGEVNVKVTSLERTFEEMP----ADM-EEIEE-GLEEGVVIYPGWGPMEVVI-ENDKVKGVKFKKCVEVFD 508 (604)
T ss_pred HHHhccccccCceEEEEeccccCcccCC----CCH-HHHHH-HHHcCCEEEeCCCCEEEEc-cCCEEEEEEEEEEeeccC
Confidence 9988753 67776432 22222 121 12333 3467999999999988864 35666555432
Q ss_pred -C-----------CcEEEcCEEEEeecCccCChhhhh---cCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcc
Q 011351 290 -D-----------GSTIDADTIVIGIGAKPTVSPFER---VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT 354 (488)
Q Consensus 290 -~-----------g~~i~~D~vi~a~G~~p~~~~~~~---~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~ 354 (488)
+ ++++++|.||+++|++|+++++.. .++..++|+|.||++++|++|+|||+|||+..+.
T Consensus 509 ~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~~~Ts~~gVfAaGD~~~~~~------ 582 (604)
T PRK13984 509 EEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTNEYGQTSIPWLFAGGDIVHGPD------ 582 (604)
T ss_pred CCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeCCCCccCCCCEEEecCcCCchH------
Confidence 1 236999999999999999887753 2355566889999999999999999999997542
Q ss_pred cccccHHHHHHHHHHHHHHHhc
Q 011351 355 ARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 355 ~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
...|..+|+.+|.+|..
T Consensus 583 -----~v~Ai~~G~~AA~~I~~ 599 (604)
T PRK13984 583 -----IIHGVADGYWAAEGIDM 599 (604)
T ss_pred -----HHHHHHHHHHHHHHHHH
Confidence 23478888888888753
No 63
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=100.00 E-value=1.2e-31 Score=271.41 Aligned_cols=323 Identities=28% Similarity=0.355 Sum_probs=263.8
Q ss_pred EEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHC
Q 011351 54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEK 133 (488)
Q Consensus 54 vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (488)
++|||+|++|+++|..|++... +.+++++..++...|.+++++..+...... ...+. .... +..+.
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----------~~~~-~~~~~ 66 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLL-AAEITLIGREPKYSYYRCPLSLYVGGGIAS-LEDLR-----------YPPR-FNRAT 66 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCC-CCCEEEEeCCCCCCCCCCccchHHhcccCC-HHHhc-----------ccch-hHHhh
Confidence 5899999999999999999875 789999999999889888887544332211 11110 1112 33577
Q ss_pred CCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEE
Q 011351 134 GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV 213 (488)
Q Consensus 134 ~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVv 213 (488)
++++..+++|+.+|++++.+.+.++ ++.||+|++|||+.+...+ +....++++++...+...+.......++++|+
T Consensus 67 ~i~~~~~~~v~~id~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vv 142 (415)
T COG0446 67 GIDVRTGTEVTSIDPENKVVLLDDG-EIEYDYLVLATGARPRPPP---ISDWEGVVTLRLREDAEALKGGAEPPKDVVVV 142 (415)
T ss_pred CCEEeeCCEEEEecCCCCEEEECCC-cccccEEEEcCCCcccCCC---ccccCceEEECCHHHHHHHHHHHhccCeEEEE
Confidence 8999999999999999999999999 7999999999999987544 55577899999999998888776667899999
Q ss_pred CCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE-EEeCCCc
Q 011351 214 GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA-VKLEDGS 292 (488)
Q Consensus 214 G~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~-v~l~~g~ 292 (488)
|+|++|+|+|..+.++|.+|++++..++++++.+.+.+.+.+.+.+++.||+++++..+.+++...+..... +...++.
T Consensus 143 G~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 222 (415)
T COG0446 143 GAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGE 222 (415)
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCc
Confidence 999999999999999999999999999999863328899999999999999999999999998643322111 5778888
Q ss_pred EEEcCEEEEeecCccCChhhhhcC--CcccCCCEEeCCCCCCC-CCCEEEEceecccCCccCCcccccccHHHHHHHHHH
Q 011351 293 TIDADTIVIGIGAKPTVSPFERVG--LNSSVGGIQVDGQFRTR-MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 369 (488)
Q Consensus 293 ~i~~D~vi~a~G~~p~~~~~~~~g--l~~~~g~i~vd~~~~t~-~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~ 369 (488)
.+++|.+++++|.+|+..+.++.+ +....|++.||++++|+ .++|||+|||+..+....+......+++.+..+++.
T Consensus 223 ~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i 302 (415)
T COG0446 223 EIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRI 302 (415)
T ss_pred EEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHH
Confidence 999999999999999977777765 45556789999999997 999999999999876554444557789999999999
Q ss_pred HHHHHhcCCCCCCCCCCceeEecccc
Q 011351 370 CIKALLSAQTHTYDYLPYFYSRVFEY 395 (488)
Q Consensus 370 ~a~~i~~~~~~~~~~~p~~~~~~~~~ 395 (488)
++.++.+. .......++.|.+.+++
T Consensus 303 ~~~~~~~~-~~~~~~~~~~~~~~~~~ 327 (415)
T COG0446 303 AAENIAGA-LRIPGLLGTVISDVGDL 327 (415)
T ss_pred HHHHhccc-cccccccCceEEEEcCe
Confidence 99999865 33335577887887765
No 64
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=100.00 E-value=2.7e-33 Score=294.82 Aligned_cols=332 Identities=17% Similarity=0.203 Sum_probs=233.4
Q ss_pred cccccccceeecccc--CCCCcccceec--ccccccccccccccccc---------ccCCCCCeEEEEcCchHHHHHHHH
Q 011351 3 SVSNSLSFKHGLSLW--CPQSPSLHRIR--HSSAKNFQRRGFVVAYS---------SFANENREFVIVGGGNAAGYAART 69 (488)
Q Consensus 3 ~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---------~~~~~~~~vvIIGgG~AGl~aA~~ 69 (488)
..+|||+.++|++|+ .+|+.+|.+.. .++.++...|+..+... +...+.++|+|||||+|||++|..
T Consensus 249 ~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~ 328 (639)
T PRK12809 249 HQTSSLPEICGRVCPQDRLCEGACTLKDHSGAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADI 328 (639)
T ss_pred HHhCCcchhhcccCCCCCChHHhccCCCcCCCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHH
Confidence 468999999999997 58999999987 78888888887775421 112356899999999999999999
Q ss_pred HHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCC
Q 011351 70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE 149 (488)
Q Consensus 70 L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~ 149 (488)
|++.|+ +|+|+|+++.... .+. ....+.+++. .......++++..|+++++++.+.
T Consensus 329 L~~~G~---~Vtv~e~~~~~GG--------~l~-~gip~~~l~~-------~~~~~~~~~~~~~Gv~~~~~~~v~----- 384 (639)
T PRK12809 329 LARAGV---QVDVFDRHPEIGG--------MLT-FGIPPFKLDK-------TVLSQRREIFTAMGIDFHLNCEIG----- 384 (639)
T ss_pred HHHcCC---cEEEEeCCCCCCC--------eee-ccCCcccCCH-------HHHHHHHHHHHHCCeEEEcCCccC-----
Confidence 999987 7999999875321 110 0000111110 001123467788899999887652
Q ss_pred CcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHH--HHHHH---------hhhcCCeEEEECCCHH
Q 011351 150 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA--DALIS---------SLEKAKKVVVVGGGYI 218 (488)
Q Consensus 150 ~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~--~~~~~---------~~~~~~~vvVvG~G~~ 218 (488)
+.+.+.+ ....||+|++|||+.....+.+++.+.+|+++...+... ..+.. ....+++++|+|+|.+
T Consensus 385 -~~~~~~~-l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~ 462 (639)
T PRK12809 385 -RDITFSD-LTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDT 462 (639)
T ss_pred -CcCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHH
Confidence 1122222 124699999999997654455677777787653211111 11110 1125789999999999
Q ss_pred HHHHHHHHHhCCC-cEEEEecCCcC-cccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---C----
Q 011351 219 GMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---E---- 289 (488)
Q Consensus 219 g~e~A~~l~~~g~-~v~lv~~~~~~-l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~---- 289 (488)
++++|..+.++|. +|+++++++.. ++. ... .+. .+++.||++++++.++++..++++++.++.+ .
T Consensus 463 a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~-~~~----e~~-~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~ 536 (639)
T PRK12809 463 TMDCLRTSIRLNAASVTCAYRRDEVSMPG-SRK----EVV-NAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEP 536 (639)
T ss_pred HHHHHHHHHHcCCCeEEEeeecCcccCCC-CHH----HHH-HHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCc
Confidence 9999999888885 79999987654 332 122 222 3567899999999999997555666665533 1
Q ss_pred --CC-----------cEEEcCEEEEeecCccCC-hhhhhcCCccc-CCCEEeCC----CCCCCCCCEEEEceecccCCcc
Q 011351 290 --DG-----------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVDG----QFRTRMPGIFAIGDVAAFPLKM 350 (488)
Q Consensus 290 --~g-----------~~i~~D~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~vd~----~~~t~~~~Ifa~GD~a~~~~~~ 350 (488)
+| .++++|.||+|+|+.|+. .++++.++..+ +|.|.||+ +++|+.|+|||+|||+..+.
T Consensus 537 ~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~-- 614 (639)
T PRK12809 537 GPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGAD-- 614 (639)
T ss_pred CCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCch--
Confidence 12 368999999999999974 56777888765 57788985 48999999999999987532
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhc
Q 011351 351 YDRTARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 351 ~~~~~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
.+..|..+|+.+|++|..
T Consensus 615 --------~vv~Ai~~Gr~AA~~i~~ 632 (639)
T PRK12809 615 --------LVVTAMAAGRQAARDMLT 632 (639)
T ss_pred --------HHHHHHHHHHHHHHHHHH
Confidence 445688899999988864
No 65
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-33 Score=263.77 Aligned_cols=266 Identities=26% Similarity=0.369 Sum_probs=205.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCc-EEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCccc-ccCCCCCCCCH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGR-LCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTP 127 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~-V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 127 (488)
+.+||+|||||||||+||.++.+.+. + ++|+|+...- +++.... ...++|++.. ..+.+...+..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l---~~~li~~~~~~g---------g~~~~~~-~venypg~~~~~~g~~L~~~~~ 68 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGL---KVVLILEGGEPG---------GQLTKTT-DVENYPGFPGGILGPELMEQMK 68 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCC---CcEEEEecCCcC---------Cccccce-eecCCCCCccCCchHHHHHHHH
Confidence 46899999999999999999999987 5 6666665322 1111111 4455666665 45555555666
Q ss_pred hHHHHCCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHHHH
Q 011351 128 EWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALIS 202 (488)
Q Consensus 128 ~~~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~~ 202 (488)
++....++++.. ..|..++... +.|++++++ +.+++||||||..++. +..++.. ..+++++.. ++ .
T Consensus 69 ~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~-~~~~~e~e~~g~gv~yc~~---cd---g 139 (305)
T COG0492 69 EQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARK-LGVPGEEEFEGKGVSYCAT---CD---G 139 (305)
T ss_pred HHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccC-CCCCcchhhcCCceEEeee---cC---c
Confidence 777778999887 6888888774 688888888 9999999999998874 4333321 135666543 22 2
Q ss_pred hhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHc-CcEEEcCCeEEEEEeCCCC
Q 011351 203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDG 281 (488)
Q Consensus 203 ~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~~ 281 (488)
+..+|+++|||+|.+++|.|..|.+.+.+|++++|++.+.+ .+ .+.+.+++. +|++++++.++++..+ +
T Consensus 140 -~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra---~~----~~~~~l~~~~~i~~~~~~~i~ei~G~--~ 209 (305)
T COG0492 140 -FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA---EE----ILVERLKKNVKIEVLTNTVVKEILGD--D 209 (305)
T ss_pred -cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc---CH----HHHHHHHhcCCeEEEeCCceeEEecC--c
Confidence 35788999999999999999999999999999999987765 22 444555555 8999999999999843 2
Q ss_pred cEEEEEeCCCc----EEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCC
Q 011351 282 RVAAVKLEDGS----TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 348 (488)
Q Consensus 282 ~v~~v~l~~g~----~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~ 348 (488)
+..+.+.+.+ ++++|-+++++|..|++++++..+...++|+|.||+.++||+|+|||||||+..+.
T Consensus 210 -v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~TsvpGifAaGDv~~~~~ 279 (305)
T COG0492 210 -VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEMETSVPGIFAAGDVADKNG 279 (305)
T ss_pred -cceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCCcccCCCCEEEeEeeccCcc
Confidence 5677777632 68999999999999999999998885567899999999999999999999999765
No 66
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.3e-32 Score=248.75 Aligned_cols=389 Identities=22% Similarity=0.320 Sum_probs=262.9
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC--------------CCCCC------ccccCCCCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE--------------RPALT------KGYLFPLDKKP 108 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~--------------~~~l~------~~~~~~~~~~~ 108 (488)
.+.+|++|||||.+|+++|+..++.|. ++.|+|........ ...++ +.|-++..
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GA---kv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~--- 91 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGA---KVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPIN--- 91 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCc---eEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccc---
Confidence 357999999999999999999999987 79999976322100 00000 00111110
Q ss_pred CCCCCcccccC----CCCCCCCHhHH----HHCCCeEEeCCcEEEEeCCCcEEEeCCCcE--EEeccEEeccCCCCCcCC
Q 011351 109 ARLPGFHTCVG----SGGERQTPEWY----KEKGIEMIYQDPVTSIDIEKQTLITNSGKL--LKYGSLIVATGCTASRFP 178 (488)
Q Consensus 109 ~~~~~~~~~~~----~~~~~~~~~~~----~~~~i~~~~~~~v~~id~~~~~v~~~~g~~--i~yd~lVlAtG~~~~~~~ 178 (488)
....|.+-.- ..+..++...| .+.+++++.+ +..-+++.+-.|...++.+ +.+.+++||||++|. +|
T Consensus 92 -~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G-~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~-~P 168 (478)
T KOG0405|consen 92 -EEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEG-RARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPI-IP 168 (478)
T ss_pred -cccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEee-eEEEcCCCceEEEecCCeeEEEecceEEEEeCCccC-CC
Confidence 1111111000 01111122222 2346777765 4444555555777777753 678999999999987 57
Q ss_pred CCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHH
Q 011351 179 EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQL 258 (488)
Q Consensus 179 ~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~ 258 (488)
++||..+ . .+++.+.+....+++++|||+|++++|+|..++.+|.+++++.|.+.+|. .||+.+++.+.+.
T Consensus 169 nIpG~E~-----g---idSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR-~FD~~i~~~v~~~ 239 (478)
T KOG0405|consen 169 NIPGAEL-----G---IDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLR-GFDEMISDLVTEH 239 (478)
T ss_pred CCCchhh-----c---cccccccchhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhc-chhHHHHHHHHHH
Confidence 7665321 1 23455555567899999999999999999999999999999999999996 5899999999999
Q ss_pred HHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCC
Q 011351 259 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMP 335 (488)
Q Consensus 259 l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~ 335 (488)
++.+||++|.+++++++.+..++.. .+....|....+|.++||+|+.|++.- +++.|+..+ +|-|.||++.+||+|
T Consensus 240 ~~~~ginvh~~s~~~~v~K~~~g~~-~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp 318 (478)
T KOG0405|consen 240 LEGRGINVHKNSSVTKVIKTDDGLE-LVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVP 318 (478)
T ss_pred hhhcceeecccccceeeeecCCCce-EEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCC
Confidence 9999999999999999997766644 344556665669999999999999864 678888876 677999999999999
Q ss_pred CEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCC---CCCCCCCCceeEeccccCCCCcceeeEEeeCCCC
Q 011351 336 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ---THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 412 (488)
Q Consensus 336 ~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~---~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~ 412 (488)
+||++||+++- ++.-+.|..+|+.+++.+.++. ...|..+|. .+|.++. +-.+|....
T Consensus 319 ~I~avGDv~gk----------~~LTPVAiaagr~la~rlF~~~~~~kldY~nVp~---vVFshP~------igtVGLtE~ 379 (478)
T KOG0405|consen 319 SIWAVGDVTGK----------INLTPVAIAAGRKLANRLFGGGKDTKLDYENVPC---VVFSHPP------IGTVGLTEE 379 (478)
T ss_pred ceEEeccccCc----------EecchHHHhhhhhHHHHhhcCCCCCccccccCce---EEEecCC------cccccCCHH
Confidence 99999999974 3344568899999999998743 235777773 4555442 112332221
Q ss_pred ---------cE-EEEccC-----------CCcEEEEEE--ECCEEEEEEeecCChHHhh-HHHHHHhcCCCCC--hhhhc
Q 011351 413 ---------ET-IEIGNF-----------DPKIATFWI--DSGKLKGVLVESGSPEEFQ-LLPTLARSQPFVD--KAKLQ 466 (488)
Q Consensus 413 ---------~~-~~~~~~-----------~~~~~~~~~--~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~ 466 (488)
++ ++...| +..+.++.. ++++++|+++++.++.++. -+.-.++.+.+-. ..-+.
T Consensus 380 EAiekyg~~~i~vy~s~F~pm~~a~~~~k~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTKadFD~tVa 459 (478)
T KOG0405|consen 380 EAIEKYGKGDIKVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGATKADFDSTVA 459 (478)
T ss_pred HHHHHhCccceEEEecCCchhHhHhhcCCcceEEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheecCcchhhhcccee
Confidence 11 112222 122445544 5699999999877766533 3344455554332 23345
Q ss_pred CCCcHHHHH
Q 011351 467 QASSVEEAL 475 (488)
Q Consensus 467 ~~~~~~~~~ 475 (488)
-|||-.|-|
T Consensus 460 IHPTSAEEl 468 (478)
T KOG0405|consen 460 IHPTSAEEL 468 (478)
T ss_pred ecCCCHHHh
Confidence 566655544
No 67
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=1.7e-32 Score=282.86 Aligned_cols=270 Identities=23% Similarity=0.317 Sum_probs=196.9
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (488)
...+||+|||||+||++||.+|++.|+ +++||++......... .....++++....+........+
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~---~v~li~~~~GG~~~~~-----------~~~~~~~~~~~~~~~~l~~~l~~ 274 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGI---RTGIVAERFGGQVLDT-----------MGIENFISVPETEGPKLAAALEE 274 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCeeecc-----------CcccccCCCCCCCHHHHHHHHHH
Confidence 346899999999999999999999988 8999976421100000 00011122222222222334456
Q ss_pred HHHHCCCeEEeCCcEEEEeCC--CcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHHHHh
Q 011351 129 WYKEKGIEMIYQDPVTSIDIE--KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISS 203 (488)
Q Consensus 129 ~~~~~~i~~~~~~~v~~id~~--~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~~~ 203 (488)
++++++++++.+++|++++.. ...+.+.+++++.||+||+|||+.++. +.+++.. ..++++.... ...
T Consensus 275 ~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~-~~ipG~~~~~~~~v~~~~~~------~~~ 347 (517)
T PRK15317 275 HVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRN-MNVPGEDEYRNKGVAYCPHC------DGP 347 (517)
T ss_pred HHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCC-CCCCCHHHhcCceEEEeecc------Cch
Confidence 677889999988899999886 346777888889999999999998764 4445431 1233333211 112
Q ss_pred hhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCc
Q 011351 204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGR 282 (488)
Q Consensus 204 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~ 282 (488)
...+++++|||+|.+|+|+|..|...+.+|+++.+.+.+.. + ..+.+.+.+ .||++++++.++++..+ +++
T Consensus 348 ~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~---~----~~l~~~l~~~~gI~i~~~~~v~~i~~~-~g~ 419 (517)
T PRK15317 348 LFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA---D----QVLQDKLRSLPNVTIITNAQTTEVTGD-GDK 419 (517)
T ss_pred hcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc---c----HHHHHHHhcCCCcEEEECcEEEEEEcC-CCc
Confidence 34689999999999999999999999999999999876643 2 234555555 59999999999999853 456
Q ss_pred EEEEEeCC---C--cEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCC
Q 011351 283 VAAVKLED---G--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPL 348 (488)
Q Consensus 283 v~~v~l~~---g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~ 348 (488)
+..+.+.+ | +++++|.+++++|.+|++++++.. +..+ +|+|.||++++|++|||||+|||+..+.
T Consensus 420 v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~-v~~~~~g~i~vd~~l~Ts~p~IyAaGDv~~~~~ 490 (517)
T PRK15317 420 VTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGT-VELNRRGEIIVDARGATSVPGVFAAGDCTTVPY 490 (517)
T ss_pred EEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhh-eeeCCCCcEEECcCCCCCCCCEEECccccCCCC
Confidence 66666543 3 359999999999999999998776 6554 5789999999999999999999998754
No 68
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=8.7e-32 Score=279.15 Aligned_cols=285 Identities=20% Similarity=0.299 Sum_probs=195.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
+.+||+|||||+|||+||.+|++.|+ +|+|||++.... . .... .....++++....+......+.+.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~---~V~liE~~~~GG-~-~~~~--------~~i~~~pg~~~~~~~~l~~~l~~~ 69 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKL---DTLIIEKDDFGG-Q-ITIT--------SEVVNYPGILNTTGPELMQEMRQQ 69 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCC---CEEEEecCCCCc-e-EEec--------cccccCCCCcCCCHHHHHHHHHHH
Confidence 45899999999999999999999887 899999864321 1 0000 000111211111111112233445
Q ss_pred HHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHHHHhh
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSL 204 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~~~~ 204 (488)
.++.+++++ .++|+.++.+.+ .+.+.++ .+.||+||||||+.++. ++++|.+ ..++++..... ...
T Consensus 70 ~~~~gv~~~-~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~-~~ipG~~~~~~~~v~~~~~~~------~~~ 140 (555)
T TIGR03143 70 AQDFGVKFL-QAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRK-LGFPGEEEFTGRGVAYCATCD------GEF 140 (555)
T ss_pred HHHcCCEEe-ccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCC-CCCCCHHHhCCceEEEEeecC------hhh
Confidence 567799986 468999987653 4566555 48999999999998874 5555532 23444432211 123
Q ss_pred hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEE
Q 011351 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 284 (488)
Q Consensus 205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~ 284 (488)
..+++++|||+|++|+|+|..|.+++.+|+++++.+.+.. .... ..+.++..||++++++.|+++.. ++.+.
T Consensus 141 ~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~---~~~~---~~~~~~~~gV~i~~~~~V~~i~~--~~~v~ 212 (555)
T TIGR03143 141 FTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC---AKLI---AEKVKNHPKIEVKFNTELKEATG--DDGLR 212 (555)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc---CHHH---HHHHHhCCCcEEEeCCEEEEEEc--CCcEE
Confidence 4689999999999999999999999999999999886532 2222 23334556999999999999973 33333
Q ss_pred EEE---eCCCcEE----EcCE----EEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCC
Q 011351 285 AVK---LEDGSTI----DADT----IVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYD 352 (488)
Q Consensus 285 ~v~---l~~g~~i----~~D~----vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~ 352 (488)
.+. ..+|++. ++|. |++++|++|++.+++. ++..+ +|+|.||++++|+.|||||+|||+....
T Consensus 213 ~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~-~l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~---- 287 (555)
T TIGR03143 213 YAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKG-VVELDKRGYIPTNEDMETNVPGVYAAGDLRPKEL---- 287 (555)
T ss_pred EEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhh-hcccCCCCeEEeCCccccCCCCEEEceeccCCCc----
Confidence 333 3456532 3676 9999999999988765 45555 5789999999999999999999985321
Q ss_pred cccccccHHHHHHHHHHHHHHH
Q 011351 353 RTARVEHVDHARQSAQHCIKAL 374 (488)
Q Consensus 353 ~~~~~~~~~~A~~~g~~~a~~i 374 (488)
..+..|..+|+.+|.+|
T Consensus 288 -----~~v~~A~~~G~~Aa~~i 304 (555)
T TIGR03143 288 -----RQVVTAVADGAIAATSA 304 (555)
T ss_pred -----chheeHHhhHHHHHHHH
Confidence 12334777777777766
No 69
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=100.00 E-value=4.6e-32 Score=254.08 Aligned_cols=295 Identities=21% Similarity=0.327 Sum_probs=216.2
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCH
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (488)
..++++|||+|+|.+|.+.+..|-...+ +|++|++.+++.|. |.++......-+.... .....
T Consensus 52 ~~kKk~vVVLGsGW~a~S~lk~ldts~Y---dV~vVSPRnyFlFT-PLLpS~~vGTve~rSI-------------vEPIr 114 (491)
T KOG2495|consen 52 GGKKKRVVVLGSGWGAISLLKKLDTSLY---DVTVVSPRNYFLFT-PLLPSTTVGTVELRSI-------------VEPIR 114 (491)
T ss_pred CCCCceEEEEcCchHHHHHHHhcccccc---ceEEeccccceEEe-eccCCccccceeehhh-------------hhhHH
Confidence 3567899999999999999998877655 89999999998886 5544321111110000 01112
Q ss_pred hHHHHC--CCeEEeCCcEEEEeCCCcEEEeC----CC----cEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHH
Q 011351 128 EWYKEK--GIEMIYQDPVTSIDIEKQTLITN----SG----KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA 197 (488)
Q Consensus 128 ~~~~~~--~i~~~~~~~v~~id~~~~~v~~~----~g----~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~ 197 (488)
...+.. ++.++. ++.+.||++++.|+++ ++ -.+.||+||+|+|+.+.. ..+||- .++.+.++..+|+
T Consensus 115 ~i~r~k~~~~~y~e-Aec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~T-FgipGV-~e~~~FLKEv~dA 191 (491)
T KOG2495|consen 115 AIARKKNGEVKYLE-AECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNT-FGIPGV-EENAHFLKEVEDA 191 (491)
T ss_pred HHhhccCCCceEEe-cccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCC-CCCCch-hhchhhhhhhhHH
Confidence 222222 456654 7889999999987763 34 368999999999999875 344443 3444567788888
Q ss_pred HHHHHhhh-----------------cCCeEEEECCCHHHHHHHHHHHhC--------------CCcEEEEecCCcCcccc
Q 011351 198 DALISSLE-----------------KAKKVVVVGGGYIGMEVAAAAVGW--------------KLDTTIIFPENHLLQRL 246 (488)
Q Consensus 198 ~~~~~~~~-----------------~~~~vvVvG~G~~g~e~A~~l~~~--------------g~~v~lv~~~~~~l~~~ 246 (488)
++++..+. +--+++|||||++|+|+|.+|... -.+||+++..+.+|+ .
T Consensus 192 qeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~-m 270 (491)
T KOG2495|consen 192 QEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILN-M 270 (491)
T ss_pred HHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHH-H
Confidence 87755431 112699999999999999998753 357999999999998 5
Q ss_pred cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeecCccCChhhhhcCCccc---C
Q 011351 247 FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLNSS---V 321 (488)
Q Consensus 247 ~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~---~ 321 (488)
|+..+.++.++.+.+.||++..++.|+.++.. .+ .+...|| ++|++-+++|+||..|. ++.+.+....+ +
T Consensus 271 Fdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~---~I-~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~lm~~i~e~~r 345 (491)
T KOG2495|consen 271 FDKRLVEYAENQFVRDGIDLDTGTMVKKVTEK---TI-HAKTKDGEIEEIPYGLLVWATGNGPR-PVIKDLMKQIDEQGR 345 (491)
T ss_pred HHHHHHHHHHHHhhhccceeecccEEEeecCc---EE-EEEcCCCceeeecceEEEecCCCCCc-hhhhhHhhcCCccCc
Confidence 89999999999999999999999999999742 22 3444455 47999999999999886 44444322222 4
Q ss_pred CCEEeCCCCCC-CCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011351 322 GGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 375 (488)
Q Consensus 322 g~i~vd~~~~t-~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~ 375 (488)
.++.||+++|. +.+||||+|||+..+.. .++.+.|.+||.++|+++-
T Consensus 346 r~L~vDE~LrV~G~~nvfAiGDca~~~~~-------~~tAQVA~QqG~yLAk~fn 393 (491)
T KOG2495|consen 346 RGLAVDEWLRVKGVKNVFAIGDCADQRGL-------KPTAQVAEQQGAYLAKNFN 393 (491)
T ss_pred eeeeeeceeeccCcCceEEeccccccccC-------ccHHHHHHHHHHHHHHHHH
Confidence 58999999998 89999999999954332 2266789999999999873
No 70
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=100.00 E-value=9.5e-32 Score=280.17 Aligned_cols=330 Identities=22% Similarity=0.255 Sum_probs=222.4
Q ss_pred cccccccceeeccccCCCCcccceec--cccccccccccccccc-------c-ccCCCCCeEEEEcCchHHHHHHHHHHH
Q 011351 3 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY-------S-SFANENREFVIVGGGNAAGYAARTFVE 72 (488)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------~-~~~~~~~~vvIIGgG~AGl~aA~~L~~ 72 (488)
-.+|||+.++|++|.++|+.+|.|.. .++.++...|+..+.. . +.....++|+|||+|++||++|..|++
T Consensus 79 ~~~np~~~~~grvc~~~ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~g~~V~VIGaGpaGL~aA~~l~~ 158 (564)
T PRK12771 79 TKDNPFPAVMGRVCYHPCESGCNRGQVDDAVGINAVERFLGDYAIANGWKFPAPAPDTGKRVAVIGGGPAGLSAAYHLRR 158 (564)
T ss_pred HHhCCcchHhhCcCCchhHHhccCCCCCCCcCHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
Confidence 46899999999999999999999987 6677777766643221 1 113456899999999999999999999
Q ss_pred cCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcE-EEEeCCCc
Q 011351 73 HGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPV-TSIDIEKQ 151 (488)
Q Consensus 73 ~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v-~~id~~~~ 151 (488)
.|+ +|+++|+.+..... +. +..+....+.++ .....+++.+.|+++..++.+ .++..+.
T Consensus 159 ~G~---~V~v~e~~~~~GG~---l~--~gip~~~~~~~~-----------~~~~l~~~~~~Gv~~~~~~~~~~~~~~~~- 218 (564)
T PRK12771 159 MGH---AVTIFEAGPKLGGM---MR--YGIPAYRLPREV-----------LDAEIQRILDLGVEVRLGVRVGEDITLEQ- 218 (564)
T ss_pred CCC---eEEEEecCCCCCCe---ee--ecCCCccCCHHH-----------HHHHHHHHHHCCCEEEeCCEECCcCCHHH-
Confidence 987 79999998764211 00 001101111000 112234567789998887554 2221111
Q ss_pred EEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCC-
Q 011351 152 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK- 230 (488)
Q Consensus 152 ~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g- 230 (488)
....||++++|||+.......+++.+..++...-.+............+++++|+|+|.++++.+..+.+++
T Consensus 219 -------~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga 291 (564)
T PRK12771 219 -------LEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGA 291 (564)
T ss_pred -------HHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCC
Confidence 112589999999987543334455555555443221111110111235789999999999999999888888
Q ss_pred CcEEEEecCCcC-cccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcE----EEEEe----CCC---------c
Q 011351 231 LDTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV----AAVKL----EDG---------S 292 (488)
Q Consensus 231 ~~v~lv~~~~~~-l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v----~~v~l----~~g---------~ 292 (488)
.+|+++.+.+.. ++. .. ..+. .+.+.||++++++.+.++..++++.+ ..+.+ .+| .
T Consensus 292 ~~v~ii~r~~~~~~~~-~~----~~~~-~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~ 365 (564)
T PRK12771 292 EEVTIVYRRTREDMPA-HD----EEIE-EALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEE 365 (564)
T ss_pred CEEEEEEecCcccCCC-CH----HHHH-HHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceE
Confidence 578998887642 221 11 2222 34567999999999999975444432 11222 122 3
Q ss_pred EEEcCEEEEeecCccCChhhhh-cCCcccCCCEEeCC-CCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHH
Q 011351 293 TIDADTIVIGIGAKPTVSPFER-VGLNSSVGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC 370 (488)
Q Consensus 293 ~i~~D~vi~a~G~~p~~~~~~~-~gl~~~~g~i~vd~-~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~ 370 (488)
++++|.||+|+|..|+..++++ .++..++|+|.||+ +++|+.|+|||+|||+..+. .+..|..+|+.+
T Consensus 366 ~i~~D~Vi~A~G~~p~~~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~----------~v~~Av~~G~~a 435 (564)
T PRK12771 366 TLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGPR----------TVTTAIGHGKKA 435 (564)
T ss_pred EEECCEEEECcCCCCchhhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCcCCCch----------HHHHHHHHHHHH
Confidence 7999999999999999888875 56765578899998 78899999999999986432 455688888888
Q ss_pred HHHHh
Q 011351 371 IKALL 375 (488)
Q Consensus 371 a~~i~ 375 (488)
|.+|.
T Consensus 436 A~~i~ 440 (564)
T PRK12771 436 ARNID 440 (564)
T ss_pred HHHHH
Confidence 88773
No 71
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.97 E-value=1.6e-30 Score=256.05 Aligned_cols=289 Identities=24% Similarity=0.271 Sum_probs=196.4
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (488)
...++|+|||||++|+++|..|++.|. +|+++|+.+..... +.. .......+... .....+
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~gg~---~~~--~~~~~~~~~~~-----------~~~~~~ 76 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGY---EVHVYDKLPEPGGL---MLF--GIPEFRIPIER-----------VREGVK 76 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCCCce---eee--cCcccccCHHH-----------HHHHHH
Confidence 345799999999999999999999887 89999988653211 000 00000000000 011234
Q ss_pred HHHHCCCeEEeCCcEEEEeC----CC-----cEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHH
Q 011351 129 WYKEKGIEMIYQDPVTSIDI----EK-----QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADA 199 (488)
Q Consensus 129 ~~~~~~i~~~~~~~v~~id~----~~-----~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~ 199 (488)
.+.+.+++++.++.+..++. .. +.+..+ +..+.||+||||||+.....|.++|.+.++++... .....
T Consensus 77 ~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~--~~~~~ 153 (352)
T PRK12770 77 ELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSAL--EYLFR 153 (352)
T ss_pred HHHhCCeEEecCcEEeeccccccccccccccccCCHH-HHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHH--HHHHH
Confidence 45667999998876654432 01 111111 12378999999999942235666776666665532 11111
Q ss_pred HHHh-----------hhcCCeEEEECCCHHHHHHHHHHHhCCCc-EEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEE
Q 011351 200 LISS-----------LEKAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267 (488)
Q Consensus 200 ~~~~-----------~~~~~~vvVvG~G~~g~e~A~~l~~~g~~-v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~ 267 (488)
+... ...+++++|||+|++|+|+|..|...|.+ |+++.+.+.... + ......+.|+++||+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~----~-~~~~~~~~l~~~gi~i~ 228 (352)
T PRK12770 154 IRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEA----P-AGKYEIERLIARGVEFL 228 (352)
T ss_pred hhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhC----C-CCHHHHHHHHHcCCEEe
Confidence 1110 11268999999999999999999999987 999988754221 1 11334456889999999
Q ss_pred cCCeEEEEEeCCCCcEEEEEe--------------------CCCcEEEcCEEEEeecCccCChhhhh-cCCccc-CCCEE
Q 011351 268 KGASIKNLEAGSDGRVAAVKL--------------------EDGSTIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQ 325 (488)
Q Consensus 268 ~~~~v~~i~~~~~~~v~~v~l--------------------~~g~~i~~D~vi~a~G~~p~~~~~~~-~gl~~~-~g~i~ 325 (488)
+++.+++++.. +++..+.+ .+++++++|.|++++|++|+..+..+ +++..+ +|++.
T Consensus 229 ~~~~v~~i~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~ 306 (352)
T PRK12770 229 ELVTPVRIIGE--GRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIV 306 (352)
T ss_pred eccCceeeecC--CcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEe
Confidence 99999998743 33433432 12357999999999999999887766 787765 56799
Q ss_pred eCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351 326 VDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 326 vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
||++++|+.|+|||+|||+..+. .+..|..+|+.+|.+|..
T Consensus 307 vd~~~~t~~~~vyaiGD~~~~~~----------~~~~A~~~g~~aa~~i~~ 347 (352)
T PRK12770 307 VDEKHMTSREGVFAAGDVVTGPS----------KIGKAIKSGLRAAQSIHE 347 (352)
T ss_pred eCCCcccCCCCEEEEcccccCcc----------hHHHHHHHHHHHHHHHHH
Confidence 99999999999999999997532 345688889988888753
No 72
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.96 E-value=4.8e-27 Score=235.80 Aligned_cols=299 Identities=18% Similarity=0.239 Sum_probs=188.2
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (488)
...++|+||||||||++||..|+++.. ..+|+|+|+.+.. |. +......+.......+ ...+..
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~-g~~Vtv~E~~p~p-gG---lvr~gvaP~~~~~k~v-----------~~~~~~ 87 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHD-GARVDIIERLPTP-FG---LVRSGVAPDHPETKNV-----------TNQFSR 87 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCC-CCeEEEEecCCCC-cc---eEeeccCCCcchhHHH-----------HHHHHH
Confidence 446799999999999999999997321 3499999999753 22 1110011111111000 112334
Q ss_pred HHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHH-------HHHHH
Q 011351 129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD-------ADALI 201 (488)
Q Consensus 129 ~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~-------~~~~~ 201 (488)
++...+++++.+..+ ++.+++++.. ..||+||||||+.+...+.++|.+.++++...++.. ...+.
T Consensus 88 ~~~~~~v~~~~nv~v------g~dvtl~~L~-~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~ 160 (491)
T PLN02852 88 VATDDRVSFFGNVTL------GRDVSLSELR-DLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLP 160 (491)
T ss_pred HHHHCCeEEEcCEEE------CccccHHHHh-hhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhh
Confidence 556678888765433 2334444433 479999999999864456678888889887654421 11111
Q ss_pred HhhhcCCeEEEECCCHHHHHHHHHHHhC--------------------CC-cEEEEecCCcCcccccCHHH---------
Q 011351 202 SSLEKAKKVVVVGGGYIGMEVAAAAVGW--------------------KL-DTTIIFPENHLLQRLFTPSL--------- 251 (488)
Q Consensus 202 ~~~~~~~~vvVvG~G~~g~e~A~~l~~~--------------------g~-~v~lv~~~~~~l~~~~~~~~--------- 251 (488)
.....+++++|||+|++|+|+|..|.+. +. +|+++.|+...-..+...++
T Consensus 161 ~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~ 240 (491)
T PLN02852 161 PDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNV 240 (491)
T ss_pred hcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCC
Confidence 1123579999999999999999998765 54 59999988532111111111
Q ss_pred ----------------------------HHHHHHHHHH---------cCcEEEcCCeEEEEEeC--CCCcEEEEEeC---
Q 011351 252 ----------------------------AQRYEQLYQQ---------NGVKFVKGASIKNLEAG--SDGRVAAVKLE--- 289 (488)
Q Consensus 252 ----------------------------~~~~~~~l~~---------~GV~v~~~~~v~~i~~~--~~~~v~~v~l~--- 289 (488)
.+.+.+...+ ++|.|++...+++|..+ +++++.++++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~ 320 (491)
T PLN02852 241 RVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTV 320 (491)
T ss_pred ceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEee
Confidence 1112222222 57999999999999742 23567766653
Q ss_pred --------------CCc--EEEcCEEEEeecCc--cCChh-h-hhcCCcc-cCCCEEeCCCCCCCCCCEEEEceecccCC
Q 011351 290 --------------DGS--TIDADTIVIGIGAK--PTVSP-F-ERVGLNS-SVGGIQVDGQFRTRMPGIFAIGDVAAFPL 348 (488)
Q Consensus 290 --------------~g~--~i~~D~vi~a~G~~--p~~~~-~-~~~gl~~-~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~ 348 (488)
+|+ +++||.||.++|++ |...+ + ...++.. ++|.|.+|+.++|+.|+|||+|||...|.
T Consensus 321 l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~Gp~ 400 (491)
T PLN02852 321 LEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGADTEPGLYVVGWLKRGPT 400 (491)
T ss_pred cCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCccCCCCEEEeeeEecCCC
Confidence 122 58999999999998 55443 3 2234443 36889999888899999999999998665
Q ss_pred ccCCcccccccHHHHHHHHHHHHHHHh
Q 011351 349 KMYDRTARVEHVDHARQSAQHCIKALL 375 (488)
Q Consensus 349 ~~~~~~~~~~~~~~A~~~g~~~a~~i~ 375 (488)
...+. ....|...+..+.+.+.
T Consensus 401 gvI~t-----~~~dA~~ta~~i~~d~~ 422 (491)
T PLN02852 401 GIIGT-----NLTCAEETVASIAEDLE 422 (491)
T ss_pred Ceeee-----cHhhHHHHHHHHHHHHH
Confidence 43222 34445555555444443
No 73
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.5e-26 Score=208.65 Aligned_cols=295 Identities=23% Similarity=0.338 Sum_probs=197.5
Q ss_pred EEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351 160 LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (488)
Q Consensus 160 ~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~ 239 (488)
.+.++..|||||.+|+ +|.+||.. .+. ..++.+...-..+.+-+|||+|.+++|+|..|+..|.+|++..|+
T Consensus 159 ~~ta~~fvIatG~RPr-Yp~IpG~~----Ey~---ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS 230 (503)
T KOG4716|consen 159 FLTAENFVIATGLRPR-YPDIPGAK----EYG---ITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS 230 (503)
T ss_pred EeecceEEEEecCCCC-CCCCCCce----eee---ecccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEE
Confidence 5789999999999997 57655531 111 124555555566777889999999999999999999999998886
Q ss_pred CcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeecCccCChh--h
Q 011351 240 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKPTVSP--F 312 (488)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~--~i~~D~vi~a~G~~p~~~~--~ 312 (488)
- ++ +.||.++.+.+.+.++++||+|.....+..+++.++++.. |.. ..++ +-++|.|+||+|+.+.++- +
T Consensus 231 I-~L-rGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~-v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L 307 (503)
T KOG4716|consen 231 I-LL-RGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLR-VFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNL 307 (503)
T ss_pred e-ec-ccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEE-EEeecccccccccchhhhhhhhhccccchhhcCC
Confidence 4 33 4599999999999999999999999888888877777642 322 2222 4579999999999998753 5
Q ss_pred hhcCCccc--CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCce
Q 011351 313 ERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYF 388 (488)
Q Consensus 313 ~~~gl~~~--~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~ 388 (488)
+..|+..+ .|.|+||+.-+|++|+|||+||+.... ++..+.|.+.|+.+|+.|.++... .|..+|..
T Consensus 308 ~~~GVk~n~ks~KI~v~~~e~t~vp~vyAvGDIl~~k---------pELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~TT 378 (503)
T KOG4716|consen 308 DNAGVKTNEKSGKIPVDDEEATNVPYVYAVGDILEDK---------PELTPVAIQSGRLLARRLFAGSTQLMDYDDVATT 378 (503)
T ss_pred CccceeecccCCccccChHHhcCCCceEEecceecCC---------cccchhhhhhchHHHHHHhcCcceeeeccCCcee
Confidence 66777763 678999999999999999999998742 334556999999999999876543 56666642
Q ss_pred eEecccc--CCCCcceeeEEeeCCCCcEEEEccC----------C--CcEEEEE---EECCEEEEEEeecCChHHhh-HH
Q 011351 389 YSRVFEY--EGSPRKVWWQFFGDNVGETIEIGNF----------D--PKIATFW---IDSGKLKGVLVESGSPEEFQ-LL 450 (488)
Q Consensus 389 ~~~~~~~--~g~~~~~~~~~~g~~~~~~~~~~~~----------~--~~~~~~~---~~~~~~~g~~~~~~~~~~~~-~~ 450 (488)
-..-.+| .|..---.++.+|..+-+ +..+-| + .=|.+.. .++.|++|.+.+++.+.+.. -+
T Consensus 379 VFTPLEy~c~GlsEE~Ai~k~g~dnie-vfH~~f~P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGf 457 (503)
T KOG4716|consen 379 VFTPLEYGCVGLSEEDAIEKYGEDNIE-VFHSYFKPLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGF 457 (503)
T ss_pred eecchhccccCCCHHHHHHHhCcccEE-EeeccccceEEEcccccCCceEEEEeecccCCceEEEEEEecCchhHHHHHH
Confidence 1111111 111100001112211101 111111 1 1133332 25699999998888887754 33
Q ss_pred HHHHhcCCCCC--hhhhcCCCcHHHHH
Q 011351 451 PTLARSQPFVD--KAKLQQASSVEEAL 475 (488)
Q Consensus 451 ~~~~~~~~~~~--~~~~~~~~~~~~~~ 475 (488)
...++.+.+.. ...+.-||+..|.+
T Consensus 458 aaAlk~glt~~~l~ntigIHPt~aE~F 484 (503)
T KOG4716|consen 458 AAALKCGLTKKDLDNTIGIHPTTAEEF 484 (503)
T ss_pred HHHHHhcccHHHHhhcccccccchhhe
Confidence 44445554443 12345566666544
No 74
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.95 E-value=8e-26 Score=248.22 Aligned_cols=280 Identities=16% Similarity=0.147 Sum_probs=191.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
.+||+|||||||||+||.+|++.|. +|+|+|+++..... .... . ..+++.. +..+.....+.+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~---~V~liD~~~~~GG~-------~~~~-~---~~~~g~~---~~~~~~~~~~~l 225 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGA---RVILVDEQPEAGGS-------LLSE-A---ETIDGKP---AADWAAATVAEL 225 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCCCCCe-------eecc-c---cccCCcc---HHHHHHHHHHHH
Confidence 5799999999999999999999987 89999998764211 0000 0 0001000 000001122333
Q ss_pred HHC-CCeEEeCCcEEEEeCCCcEEEeC----------C----C--cEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecC
Q 011351 131 KEK-GIEMIYQDPVTSIDIEKQTLITN----------S----G--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD 193 (488)
Q Consensus 131 ~~~-~i~~~~~~~v~~id~~~~~v~~~----------~----g--~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~ 193 (488)
... +++++.+++|..++......... + . ..+.||+||||||+.++ .++++|++.+++.+...
T Consensus 226 ~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r-~~pipG~~~pgV~~~~~ 304 (985)
T TIGR01372 226 TAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHER-PLVFANNDRPGVMLAGA 304 (985)
T ss_pred hcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCc-CCCCCCCCCCCcEEchH
Confidence 334 59999888898886543211110 0 1 15899999999999987 45678888899887644
Q ss_pred HHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeE
Q 011351 194 VADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 272 (488)
Q Consensus 194 ~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~-~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v 272 (488)
.....+- .....+++++|+|+|.+++|+|..|.+.|. .|+++++.+.+ ...+.+.+++.||++++++.+
T Consensus 305 ~~~~l~~-~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~---------~~~l~~~L~~~GV~i~~~~~v 374 (985)
T TIGR01372 305 ARTYLNR-YGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV---------SPEARAEARELGIEVLTGHVV 374 (985)
T ss_pred HHHHHHh-hCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch---------hHHHHHHHHHcCCEEEcCCeE
Confidence 3322111 112357999999999999999999999996 46788766533 224556788999999999999
Q ss_pred EEEEeCCCCcEEEEEeC----CCcEEEcCEEEEeecCccCChhhhhcCCccc--C--CCEEeCCCCCCCCCCEEEEceec
Q 011351 273 KNLEAGSDGRVAAVKLE----DGSTIDADTIVIGIGAKPTVSPFERVGLNSS--V--GGIQVDGQFRTRMPGIFAIGDVA 344 (488)
Q Consensus 273 ~~i~~~~~~~v~~v~l~----~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~--~--g~i~vd~~~~t~~~~Ifa~GD~a 344 (488)
+++.. ++.+..|.+. ++++++||.|+++.|.+|++++++.++.... . +.... .|+.|+||++|||+
T Consensus 375 ~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~~----~t~v~gVyaaGD~~ 448 (985)
T TIGR01372 375 AATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFLP----GDAVQGCILAGAAN 448 (985)
T ss_pred EEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCceec----CCCCCCeEEeeccC
Confidence 99973 3445455554 4568999999999999999999988876532 1 11111 37799999999999
Q ss_pred ccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011351 345 AFPLKMYDRTARVEHVDHARQSAQHCIKALL 375 (488)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~ 375 (488)
+.. ....|..+|+.+|..++
T Consensus 449 g~~-----------~~~~A~~eG~~Aa~~i~ 468 (985)
T TIGR01372 449 GLF-----------GLAAALADGAAAGAAAA 468 (985)
T ss_pred Ccc-----------CHHHHHHHHHHHHHHHH
Confidence 743 33457777887777664
No 75
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.94 E-value=6.3e-26 Score=237.84 Aligned_cols=287 Identities=12% Similarity=0.096 Sum_probs=176.5
Q ss_pred Ccccccccceee-ccccCCCCcccceec-ccccccccccccccc------------------------ccccCCCCCeEE
Q 011351 2 ASVSNSLSFKHG-LSLWCPQSPSLHRIR-HSSAKNFQRRGFVVA------------------------YSSFANENREFV 55 (488)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------------------~~~~~~~~~~vv 55 (488)
+.++|||+.+|| ++|. +|+.+|.+.. .+++++...|++.+. +.|.....++|+
T Consensus 309 i~~~NP~p~~~G~RVCp-~CE~aC~r~~dePV~I~~ler~i~d~~~~~~~~~e~y~~~~~~~~~~~~~~~~~~~tgKKVa 387 (1028)
T PRK06567 309 IVIDNPMVAATGHRICN-DCSKACIYQKQDPVNIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKEPTNYNIL 387 (1028)
T ss_pred HHHhCCChHhhCCccCc-chHHHhcCCCCCCeehhHHHHHHhhhhhhhcccccccccccccccccccCCCCCCCCCCeEE
Confidence 457999999999 8887 7999999987 788888888765431 112234678999
Q ss_pred EEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CC--C---------CCCCccccCCCCCCCCCCCCcccccCCCC
Q 011351 56 IVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YE--R---------PALTKGYLFPLDKKPARLPGFHTCVGSGG 122 (488)
Q Consensus 56 IIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~--~---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (488)
||||||||++||++|++.|+ +||++|+.+..+ |. . +.+...... ...|.......
T Consensus 388 VVGaGPAGLsAA~~La~~Gh---~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~-------~~GG~~~yGIp-- 455 (1028)
T PRK06567 388 VTGLGPAGFSLSYYLLRSGH---NVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPR-------GFGGVAEYGIT-- 455 (1028)
T ss_pred EECcCHHHHHHHHHHHhCCC---eEEEEccccccccccccccccchhhhhccchhhhccc-------cCCcccccCcc--
Confidence 99999999999999999988 899999864321 11 0 111100000 00000000000
Q ss_pred CCCCHhH------HHHCC--CeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCC-CCCcCCCCCCCCCCcEEEecC
Q 011351 123 ERQTPEW------YKEKG--IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRD 193 (488)
Q Consensus 123 ~~~~~~~------~~~~~--i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~-~~~~~~~~~g~~~~gv~~~~~ 193 (488)
.+...+. ....+ ++++.+.. + +..++.++-....||+|+||||+ .++ .+.++|.+.+++....+
T Consensus 456 ~R~~k~~l~~i~~il~~g~~v~~~~gv~---l---G~dit~edl~~~gyDAV~IATGA~kpr-~L~IPGeda~GV~sA~D 528 (1028)
T PRK06567 456 VRWDKNNLDILRLILERNNNFKYYDGVA---L---DFNITKEQAFDLGFDHIAFCIGAGQPK-VLDIENFEAKGVKTASD 528 (1028)
T ss_pred ccchHHHHHHHHHHHhcCCceEEECCeE---E---CccCCHHHHhhcCCCEEEEeCCCCCCC-CCCCCCccCCCeEEHHH
Confidence 0111111 12223 44444432 1 12222222223579999999999 465 45678877778776543
Q ss_pred HHHHHHHHHh--------hhcCCeEEEECCCHHHHHHHHHHHh-------------------------------------
Q 011351 194 VADADALISS--------LEKAKKVVVVGGGYIGMEVAAAAVG------------------------------------- 228 (488)
Q Consensus 194 ~~~~~~~~~~--------~~~~~~vvVvG~G~~g~e~A~~l~~------------------------------------- 228 (488)
+......... ...+++|+|||||.+|+|+|.....
T Consensus 529 fL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~g 608 (1028)
T PRK06567 529 FLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLFK 608 (1028)
T ss_pred HHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHhhc
Confidence 2222111100 1235799999999999999984332
Q ss_pred --------------CCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-----
Q 011351 229 --------------WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE----- 289 (488)
Q Consensus 229 --------------~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~----- 289 (488)
.| .|++++|+..--... ...-.+.+.+. .+.||+++.+..+.++..++++.+.++++.
T Consensus 609 ~~~~~~~v~~l~~~~G-~VtIvYRr~~~empA-~~~~~eEv~~A-~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~ 685 (1028)
T PRK06567 609 EAKNNEELRKVFNKLG-GATVYYRGRLQDSPA-YKLNHEELIYA-LALGVDFKENMQPLRINVDKYGHVESVEFENRNRH 685 (1028)
T ss_pred chhccchhhhhhccCC-ceEEEecCChhhCCC-CCCCHHHHHHH-HHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecc
Confidence 22 288888775321110 00012344443 556999999999999986666777665442
Q ss_pred ---------C-C---------------cEEEcCEEEEeecCccCChh
Q 011351 290 ---------D-G---------------STIDADTIVIGIGAKPTVSP 311 (488)
Q Consensus 290 ---------~-g---------------~~i~~D~vi~a~G~~p~~~~ 311 (488)
+ + .+++||.||+|+|..||+.+
T Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~ 732 (1028)
T PRK06567 686 CEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQF 732 (1028)
T ss_pred cccccccccccccccCCcCcccCCCccccccCCEEEEecccCCcccc
Confidence 1 1 46899999999999999876
No 76
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.4e-25 Score=192.48 Aligned_cols=276 Identities=21% Similarity=0.282 Sum_probs=195.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCC-ccccCCCCCCCCCCCCccc-ccCCCCCCCCH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALT-KGYLFPLDKKPARLPGFHT-CVGSGGERQTP 127 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 127 (488)
.+.+|+|||+|||+.+||.++++... +-+|+|-...- ... .+.+. ......++|+|++ ..|.+.+.++.
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaarael---kPllfEG~~~~-----~i~pGGQLt-TTT~veNfPGFPdgi~G~~l~d~mr 77 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARAEL---KPLLFEGMMAN-----GIAPGGQLT-TTTDVENFPGFPDGITGPELMDKMR 77 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhccc---CceEEeeeecc-----CcCCCceee-eeeccccCCCCCcccccHHHHHHHH
Confidence 35699999999999999999999865 67788753221 111 12222 2345667888876 45666666777
Q ss_pred hHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHh--
Q 011351 128 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-- 203 (488)
Q Consensus 128 ~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~-- 203 (488)
++..++|.+++.. .|.++|...+ ++.+ +.+.+.+|.+|+|||+..+++. .||. .++.+.-+.+..+.-+...
T Consensus 78 kqs~r~Gt~i~tE-tVskv~~sskpF~l~t-d~~~v~~~avI~atGAsAkRl~-~pg~-ge~~fWqrGiSaCAVCDGaap 153 (322)
T KOG0404|consen 78 KQSERFGTEIITE-TVSKVDLSSKPFKLWT-DARPVTADAVILATGASAKRLH-LPGE-GEGEFWQRGISACAVCDGAAP 153 (322)
T ss_pred HHHHhhcceeeee-ehhhccccCCCeEEEe-cCCceeeeeEEEecccceeeee-cCCC-CcchHHhcccchhhcccCcch
Confidence 7788899999874 7888887764 4555 4556899999999999887643 2332 1221222222222222221
Q ss_pred hhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCc-
Q 011351 204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR- 282 (488)
Q Consensus 204 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~- 282 (488)
+.++|..+|||||.+++|-|..|.+.+.+|.+++|++.+..+ .. +.++..+.-+|++++++.+.+...+ .+.
T Consensus 154 ifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs---~~---Mq~ra~~npnI~v~~nt~~~ea~gd-~~~l 226 (322)
T KOG0404|consen 154 IFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRAS---KI---MQQRAEKNPNIEVLYNTVAVEALGD-GKLL 226 (322)
T ss_pred hhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHH---HH---HHHHHhcCCCeEEEechhhhhhccC-cccc
Confidence 357889999999999999999999999999999999877543 12 2334455668999999887776532 222
Q ss_pred ----EEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCC-CCCCCCCCEEEEceeccc
Q 011351 283 ----VAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAF 346 (488)
Q Consensus 283 ----v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~-~~~t~~~~Ifa~GD~a~~ 346 (488)
+..+.+.+.+.++.+-+++++|..|++.+++. .++.| +|+|++-+ .-.|++|++||+||+...
T Consensus 227 ~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~g-qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~ 295 (322)
T KOG0404|consen 227 NGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKG-QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDK 295 (322)
T ss_pred cceEEEecccCcccccccceeEEEecCCchhhHhcC-ceeeccCceEEeccCcccccccceeeccccchH
Confidence 33344444567999999999999999999987 45554 67787764 667899999999999874
No 77
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1e-25 Score=205.38 Aligned_cols=272 Identities=21% Similarity=0.311 Sum_probs=194.3
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (488)
...+||+||||||||.+||.+.+++|...+ .+-|+-.....+ .....++.+.+...|......+.+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTG--l~aerfGGQvld------------T~~IENfIsv~~teGpkl~~ale~ 274 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTG--LVAERFGGQVLD------------TMGIENFISVPETEGPKLAAALEA 274 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhh--hhhhhhCCeecc------------ccchhheeccccccchHHHHHHHH
Confidence 456899999999999999999999987311 111211100000 000111111122222222234556
Q ss_pred HHHHCCCeEEeCCcEEEEeCC-----CcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHH
Q 011351 129 WYKEKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADAL 200 (488)
Q Consensus 129 ~~~~~~i~~~~~~~v~~id~~-----~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~ 200 (488)
..+++.+++..-.+++++.+. ...|++++|-.+..+.+|||||++.+. -++||.+ ..|+.++.. +
T Consensus 275 Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn-~nvPGE~e~rnKGVayCPH------C 347 (520)
T COG3634 275 HVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRN-MNVPGEDEYRNKGVAYCPH------C 347 (520)
T ss_pred HHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhc-CCCCchHHHhhCCeeeCCC------C
Confidence 678889998766677777763 348999999999999999999998775 3456643 356666543 3
Q ss_pred HHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCC
Q 011351 201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGS 279 (488)
Q Consensus 201 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~ 279 (488)
...+.++|+|+|||||.+|+|.|..|+..-.+||+++-.+.+-. .+.+++.|+. .+++++.+..-+++.. +
T Consensus 348 DGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkA-------D~VLq~kl~sl~Nv~ii~na~Ttei~G-d 419 (520)
T COG3634 348 DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKA-------DAVLQDKLRSLPNVTIITNAQTTEVKG-D 419 (520)
T ss_pred CCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhh-------HHHHHHHHhcCCCcEEEecceeeEEec-C
Confidence 33467899999999999999999999998889999976664432 2244444544 4899999999999983 3
Q ss_pred CCcEEEEEeCC---Cc--EEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCcc
Q 011351 280 DGRVAAVKLED---GS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKM 350 (488)
Q Consensus 280 ~~~v~~v~l~~---g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~ 350 (488)
+.+|.++...| |+ .+.-+-|++-+|..||++|++.. ++.+ +|-|.||....||+|+|||+|||+..+.+.
T Consensus 420 g~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~-vel~~rGEIivD~~g~TsvpGvFAAGD~T~~~yKQ 495 (520)
T COG3634 420 GDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGA-VELNRRGEIIVDARGETNVPGVFAAGDCTTVPYKQ 495 (520)
T ss_pred CceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhch-hhcCcCccEEEecCCCcCCCceeecCcccCCccce
Confidence 46677776644 33 47778899999999999999987 5544 678999999999999999999999987653
No 78
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.92 E-value=5e-24 Score=214.94 Aligned_cols=289 Identities=18% Similarity=0.195 Sum_probs=180.9
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----CCCCC------C--------Cccc---cCCCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YERPA------L--------TKGY---LFPLDKK 107 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~----~~~~~------l--------~~~~---~~~~~~~ 107 (488)
...++|+|||||+|||+||++|++.|+ +++++|+++... |.... + +..| .......
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~---~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~ 84 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGH---TVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRE 84 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCC---eEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHh
Confidence 446899999999999999999999987 899999987543 21000 0 0000 0000000
Q ss_pred ---CCCCCCccc-----------ccCCCCCCCCHhHHHHCCCe--EEeCCcEEEEeCCCc--EEEeCCC--c--EEEecc
Q 011351 108 ---PARLPGFHT-----------CVGSGGERQTPEWYKEKGIE--MIYQDPVTSIDIEKQ--TLITNSG--K--LLKYGS 165 (488)
Q Consensus 108 ---~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~i~--~~~~~~v~~id~~~~--~v~~~~g--~--~i~yd~ 165 (488)
..++|.... ..+.+...++.++.+.+++. ++++++|+++++.+. .|++.++ . +..||+
T Consensus 85 ~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~ 164 (461)
T PLN02172 85 CMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDA 164 (461)
T ss_pred hccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCE
Confidence 001111100 01111222334555667887 888999999997654 4555432 2 457999
Q ss_pred EEeccCC--CCCcCCCCCCC-CCCcE-EEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 011351 166 LIVATGC--TASRFPEKIGG-YLPGV-HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 241 (488)
Q Consensus 166 lVlAtG~--~~~~~~~~~g~-~~~gv-~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~ 241 (488)
||+|||. .|. .|.++|. ..+|. .+..+..+.+ ..++|+|+|||+|.+|+|+|..|...+.+|+++.|...
T Consensus 165 VIvAtG~~~~P~-~P~ipG~~~f~G~~iHs~~yr~~~-----~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~ 238 (461)
T PLN02172 165 VVVCNGHYTEPN-VAHIPGIKSWPGKQIHSHNYRVPD-----PFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASE 238 (461)
T ss_pred EEEeccCCCCCc-CCCCCCcccCCceEEEecccCCcc-----ccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecc
Confidence 9999994 454 4555553 23442 1222222211 13689999999999999999999999999999998753
Q ss_pred CcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCcccC
Q 011351 242 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSV 321 (488)
Q Consensus 242 ~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~ 321 (488)
+.. . ..+......+..+..|..+.. ++ .|.+.||+++++|.||+|||++++.+|++..+
T Consensus 239 ~~~----------~-~~~~~~~~~v~~~~~I~~~~~--~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~----- 297 (461)
T PLN02172 239 SDT----------Y-EKLPVPQNNLWMHSEIDTAHE--DG---SIVFKNGKVVYADTIVHCTGYKYHFPFLETNG----- 297 (461)
T ss_pred ccc----------c-ccCcCCCCceEECCcccceec--CC---eEEECCCCCccCCEEEECCcCCccccccCccc-----
Confidence 311 0 011112344555666766652 33 47899999999999999999999999887533
Q ss_pred CCEEeCCC---------CCCC-CCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC
Q 011351 322 GGIQVDGQ---------FRTR-MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT 379 (488)
Q Consensus 322 g~i~vd~~---------~~t~-~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~ 379 (488)
.+.+|++ +-.. .|+++.+|=.... ..+.....|++.+|+.+.|...
T Consensus 298 -~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~-----------~~f~~~E~Qa~~~a~v~sG~~~ 353 (461)
T PLN02172 298 -YMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMG-----------IQFVMFEIQSKWVAAVLSGRVT 353 (461)
T ss_pred -ceeeCCCcchhhHHhhcCCCCCCcEEEEeccccc-----------cCchhHHHHHHHHHHHHcCCCC
Confidence 3334332 1123 4899999943211 1345578899999988876543
No 79
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.92 E-value=7.5e-25 Score=217.73 Aligned_cols=337 Identities=23% Similarity=0.209 Sum_probs=228.7
Q ss_pred cccccccceeeccccCC--CCcccceec--cccccccccccccccc---------cccCCCCCeEEEEcCchHHHHHHHH
Q 011351 3 SVSNSLSFKHGLSLWCP--QSPSLHRIR--HSSAKNFQRRGFVVAY---------SSFANENREFVIVGGGNAAGYAART 69 (488)
Q Consensus 3 ~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~vvIIGgG~AGl~aA~~ 69 (488)
..+|+++++||++|..+ |..+|.... .+.++....++..+.. .+.....++|.||||||||++||..
T Consensus 62 ~~tn~~p~~~gRvcp~~~~ceg~cv~~~~~~~v~i~~le~~i~d~~~~~g~i~~~~~~~~tg~~VaviGaGPAGl~~a~~ 141 (457)
T COG0493 62 HKTNNLPAITGRVCPLGNLCEGACVLGIEELPVNIGALERAIGDKADREGWIPGELPGSRTGKKVAVIGAGPAGLAAADD 141 (457)
T ss_pred HHhCCCccccCccCCCCCceeeeeeeccCCCchhhhhHHHHHhhHHHHhCCCCCCCCCCCCCCEEEEECCCchHhhhHHH
Confidence 46899999999999987 999999974 8888888777766531 1223445899999999999999999
Q ss_pred HHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCC
Q 011351 70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE 149 (488)
Q Consensus 70 L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~ 149 (488)
|.+.|+ +||++|+.+....- . .|-.+....+.++ ..+..+.+++.|++|+.++++-
T Consensus 142 L~~~G~---~Vtv~e~~~~~GGl----l-~yGIP~~kl~k~i-----------~d~~i~~l~~~Gv~~~~~~~vG----- 197 (457)
T COG0493 142 LSRAGH---DVTVFERVALDGGL----L-LYGIPDFKLPKDI-----------LDRRLELLERSGVEFKLNVRVG----- 197 (457)
T ss_pred HHhCCC---eEEEeCCcCCCcee----E-EecCchhhccchH-----------HHHHHHHHHHcCeEEEEcceEC-----
Confidence 999998 89999988654210 0 0111111222111 2345677888999999987652
Q ss_pred CcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhh---------hcCCeEEEECCCHHHH
Q 011351 150 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL---------EKAKKVVVVGGGYIGM 220 (488)
Q Consensus 150 ~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~---------~~~~~vvVvG~G~~g~ 220 (488)
+.++++.-. -.||+++++||+.......++|.+.++++...++.......... ..+++++|||+|.+++
T Consensus 198 -~~it~~~L~-~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~ 275 (457)
T COG0493 198 -RDITLEELL-KEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAM 275 (457)
T ss_pred -CcCCHHHHH-HhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHH
Confidence 222222211 35799999999875555566777778876544333222211111 1238999999999999
Q ss_pred HHHHHHHhCCC-cEEEEecCCcCcc-cccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC--------C
Q 011351 221 EVAAAAVGWKL-DTTIIFPENHLLQ-RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--------D 290 (488)
Q Consensus 221 e~A~~l~~~g~-~v~lv~~~~~~l~-~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~--------~ 290 (488)
+++......|. .|+.+.+...--. ...+........+...+.|+.+.+.....++..+++|++..+.+. +
T Consensus 276 D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~ 355 (457)
T COG0493 276 DCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVD 355 (457)
T ss_pred HHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCccc
Confidence 99999988887 6776642221100 001112234455667888999999999999987777877655331 1
Q ss_pred -----------C--cEEEcCEEEEeecCccCChhh--hhcCCccc-CCCEEeCCCC-CCCCCCEEEEceecccCCccCCc
Q 011351 291 -----------G--STIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGGIQVDGQF-RTRMPGIFAIGDVAAFPLKMYDR 353 (488)
Q Consensus 291 -----------g--~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~-~g~i~vd~~~-~t~~~~Ifa~GD~a~~~~~~~~~ 353 (488)
| .++++|.|+.++|+.++.... ...++..+ .|.+.+|+.+ +|+.|++||.||+.....
T Consensus 356 ~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~----- 430 (457)
T COG0493 356 GWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAA----- 430 (457)
T ss_pred ccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccchh-----
Confidence 2 257899999999998874432 22245444 6889999988 999999999999998532
Q ss_pred ccccccHHHHHHHHHHHHHHHh
Q 011351 354 TARVEHVDHARQSAQHCIKALL 375 (488)
Q Consensus 354 ~~~~~~~~~A~~~g~~~a~~i~ 375 (488)
.+-.|+.+|+.+|+.|.
T Consensus 431 -----~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 431 -----LVVWAIAEGREAAKAID 447 (457)
T ss_pred -----hhhhHHhhchHHHHhhh
Confidence 23346777777777654
No 80
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.89 E-value=1.8e-22 Score=182.42 Aligned_cols=295 Identities=20% Similarity=0.263 Sum_probs=197.9
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCC--ccccCCCCCCCCCCCCcccccCCCCCCC
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALT--KGYLFPLDKKPARLPGFHTCVGSGGERQ 125 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (488)
..++++|+|||||.+|++.|..+.+.-. .++|-|||+.+.+.|+ |.+. .+.+...+... +
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~-~g~vgIvep~e~HyYQ-PgfTLvGgGl~~l~~sr----------------r 97 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLG-SGSVGIVEPAEDHYYQ-PGFTLVGGGLKSLDSSR----------------R 97 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcC-CCceEEecchhhcccC-cceEEeccchhhhhhcc----------------C
Confidence 4568999999999999999999987643 6799999999999887 5442 11111111100 0
Q ss_pred CHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCC----CCCCcEEEecCHHHHHHHH
Q 011351 126 TPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG----GYLPGVHYIRDVADADALI 201 (488)
Q Consensus 126 ~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g----~~~~gv~~~~~~~~~~~~~ 201 (488)
....+--.+...+. ..|.+++|++++|.+++|++|.||+||||+|..-+ +..++| .+.|++....+....++..
T Consensus 98 ~~a~liP~~a~wi~-ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~-y~~IkGl~Eal~tP~VcSnYSpkyvdk~y 175 (446)
T KOG3851|consen 98 KQASLIPKGATWIK-EKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLD-YGKIKGLVEALDTPGVCSNYSPKYVDKVY 175 (446)
T ss_pred cccccccCCcHHHH-HHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceec-cchhcChHhhccCCCcccccChHHHHHHH
Confidence 01111112344443 57888999999999999999999999999998754 455544 3457777776666666666
Q ss_pred Hhhh---cCCeEE--------EECCCHHHHHHHH-HHHhCCCc--EEE--EecCCcCcccccCHHHHHHHHHHHHHcCcE
Q 011351 202 SSLE---KAKKVV--------VVGGGYIGMEVAA-AAVGWKLD--TTI--IFPENHLLQRLFTPSLAQRYEQLYQQNGVK 265 (488)
Q Consensus 202 ~~~~---~~~~vv--------VvG~G~~g~e~A~-~l~~~g~~--v~l--v~~~~~~l~~~~~~~~~~~~~~~l~~~GV~ 265 (488)
+.+. .+..+- ..|+-.-.+-++. .+++.|.+ +.+ ...-+.++. -....+.+++..++++|+
T Consensus 176 ~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFg---Vk~Y~~AL~k~~~~rni~ 252 (446)
T KOG3851|consen 176 KELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFG---VKHYADALEKVIQERNIT 252 (446)
T ss_pred HHHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCccceec---HHHHHHHHHHHHHhcceE
Confidence 6554 222222 2344444444444 34555542 333 333344433 246788899999999999
Q ss_pred EEcCCeEEEEEeCCCCcEEEEEeCC-C--cEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCC-CCCC-CCCCEEEE
Q 011351 266 FVKGASIKNLEAGSDGRVAAVKLED-G--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG-QFRT-RMPGIFAI 340 (488)
Q Consensus 266 v~~~~~v~~i~~~~~~~v~~v~l~~-g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~-~~~t-~~~~Ifa~ 340 (488)
+.......++..++...+.. .+.+ | ++++++++-+....++. +.++.+.+.+..|++.||. .+|. .+||||++
T Consensus 253 vn~krnLiEV~~~~~~AvFe-~L~kPG~t~ei~yslLHv~Ppms~p-e~l~~s~~adktGfvdVD~~TlQs~kypNVFgi 330 (446)
T KOG3851|consen 253 VNYKRNLIEVRTNDRKAVFE-NLDKPGVTEEIEYSLLHVTPPMSTP-EVLANSDLADKTGFVDVDQSTLQSKKYPNVFGI 330 (446)
T ss_pred eeeccceEEEeccchhhHHH-hcCCCCceeEEeeeeeeccCCCCCh-hhhhcCcccCcccceecChhhhccccCCCceee
Confidence 99999999987543222111 1222 4 46899999999888876 7888888888789999996 5665 79999999
Q ss_pred ceecccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011351 341 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 375 (488)
Q Consensus 341 GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~ 375 (488)
|||...|+.. +.+....|...+-+|+.
T Consensus 331 GDc~n~PnsK--------TaAAvaaq~~vv~~nl~ 357 (446)
T KOG3851|consen 331 GDCMNLPNSK--------TAAAVAAQSPVVDKNLT 357 (446)
T ss_pred ccccCCCchh--------hHHHHHhcCchhhhhHH
Confidence 9999988743 22233455666666664
No 81
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.88 E-value=3e-22 Score=176.19 Aligned_cols=267 Identities=25% Similarity=0.369 Sum_probs=177.1
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----CCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (488)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (488)
+.+|||||+||.+||..|+..-. ..+|.|+...+..- |.. .. .|+...+-... ...+
T Consensus 1 kfivvgggiagvscaeqla~~~p-sa~illitass~vksvtn~~~--i~-~ylekfdv~eq---------------~~~e 61 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEP-SAEILLITASSFVKSVTNYQK--IG-QYLEKFDVKEQ---------------NCHE 61 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCC-CCcEEEEeccHHHHHHhhHHH--HH-HHHHhcCcccc---------------chhh
Confidence 47999999999999999999864 78999999876421 110 00 01111000000 0000
Q ss_pred HHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCC
Q 011351 129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK 208 (488)
Q Consensus 129 ~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~ 208 (488)
...+.. +++ + .|..++...+.+++.+|..+.|++|+++||..|...- .+ .-+.+..+++.+..+.++..+.+.|
T Consensus 62 lg~~f~-~~~-~-~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPklq~--E~-~n~~Iv~irDtDsaQllq~kl~kaK 135 (334)
T KOG2755|consen 62 LGPDFR-RFL-N-DVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPKLQV--EG-INPKIVGIRDTDSAQLLQCKLVKAK 135 (334)
T ss_pred hcccHH-HHH-H-hhhhhccccceEEecCCceeeEEEEEEecCCCcceee--cC-CCceEEEEecCcHHHHHHHHHhhcc
Confidence 111111 122 2 3666778889999999999999999999999886322 22 2456777778887888888888999
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcC----cEE--------EcCCe-----
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG----VKF--------VKGAS----- 271 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~G----V~v--------~~~~~----- 271 (488)
.|+|+|.|-+++|++.++.- .+|++....+.+...+++|.+.+.+...|+..+ |.+ ..+..
T Consensus 136 ~VlilgnGgia~El~yElk~--~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg 213 (334)
T KOG2755|consen 136 IVLILGNGGIAMELTYELKI--LNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVG 213 (334)
T ss_pred eEEEEecCchhHHHHHHhhc--ceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcc
Confidence 99999999999999999865 478888888888888888888777766651111 100 00000
Q ss_pred ------------EEEE-------------------EeCCCCcEEEEEeCCC--cEEEcCEEEEeecCccCChhhhhcCCc
Q 011351 272 ------------IKNL-------------------EAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLN 318 (488)
Q Consensus 272 ------------v~~i-------------------~~~~~~~v~~v~l~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~ 318 (488)
...+ .+.+...+.......| ..+.||.+++++|..||.+++-...+.
T Consensus 214 ~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~lq 293 (334)
T KOG2755|consen 214 PALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKMLQ 293 (334)
T ss_pred cccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEEecChhh
Confidence 0000 0000011111111111 257899999999999999875544444
Q ss_pred c-cCCCEEeCCCCCCCCCCEEEEceeccc
Q 011351 319 S-SVGGIQVDGQFRTRMPGIFAIGDVAAF 346 (488)
Q Consensus 319 ~-~~g~i~vd~~~~t~~~~Ifa~GD~a~~ 346 (488)
. ++|++.||+.|+|+.|++||+||++..
T Consensus 294 ~~edggikvdd~m~tslpdvFa~gDvctt 322 (334)
T KOG2755|consen 294 ITEDGGIKVDDAMETSLPDVFAAGDVCTT 322 (334)
T ss_pred hccccCeeehhhccccccceeeecceecc
Confidence 3 579999999999999999999999984
No 82
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.87 E-value=8.8e-22 Score=201.71 Aligned_cols=316 Identities=18% Similarity=0.226 Sum_probs=192.3
Q ss_pred ccccccceeeccccCCCCcccceec--ccccccccccccccc--------cc-ccCCCCCeEEEEcCchHHHHHHHHHHH
Q 011351 4 VSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVA--------YS-SFANENREFVIVGGGNAAGYAARTFVE 72 (488)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--------~~-~~~~~~~~vvIIGgG~AGl~aA~~L~~ 72 (488)
..|.||++||++|++||+.+|...- .++.++...+.+.+. +- |.....++|.|||+|||||+||..|.+
T Consensus 1727 ~tnnfpeftgrvcpapcegactlgiie~pv~iksie~aiid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk 1806 (2142)
T KOG0399|consen 1727 ETNNFPEFTGRVCPAPCEGACTLGIIEPPVGIKSIECAIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNK 1806 (2142)
T ss_pred hhCCCccccCccCCCCcCcceeeecccCCccccchhhHHHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhh
Confidence 4799999999999999999999988 666676666555542 22 223456899999999999999999999
Q ss_pred cCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcE
Q 011351 73 HGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQT 152 (488)
Q Consensus 73 ~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~ 152 (488)
.|+ .|+++|+.+.... +. .|-.+.-+... . ...+..+.+.+.||+|+.++++- +.
T Consensus 1807 ~gh---~v~vyer~dr~gg----ll-~ygipnmkldk-~----------vv~rrv~ll~~egi~f~tn~eig------k~ 1861 (2142)
T KOG0399|consen 1807 AGH---TVTVYERSDRVGG----LL-MYGIPNMKLDK-F----------VVQRRVDLLEQEGIRFVTNTEIG------KH 1861 (2142)
T ss_pred cCc---EEEEEEecCCcCc----ee-eecCCccchhH-H----------HHHHHHHHHHhhCceEEeecccc------cc
Confidence 998 7999999876421 00 01111100000 0 01234566788899999887652 22
Q ss_pred EEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHH--HHHHh-------hhcCCeEEEECCCHHHHHHH
Q 011351 153 LITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD--ALISS-------LEKAKKVVVVGGGYIGMEVA 223 (488)
Q Consensus 153 v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~--~~~~~-------~~~~~~vvVvG~G~~g~e~A 223 (488)
+-+ |+-.-.+|.+|+|+|+...+-.+++|.+..|++..-.+.+.. .+.+. ..++|+|+|||||.+|-++.
T Consensus 1862 vs~-d~l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dci 1940 (2142)
T KOG0399|consen 1862 VSL-DELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCI 1940 (2142)
T ss_pred ccH-HHHhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCcccccc
Confidence 322 222246899999999864433456888888886543222221 11111 12578999999999999988
Q ss_pred HHHHhCCCcEE-EEecC---------CcCccc---ccCHHHH-HHHHHHHHHcCcEEEcCC-eEEEEEeCCCCcEEEE--
Q 011351 224 AAAVGWKLDTT-IIFPE---------NHLLQR---LFTPSLA-QRYEQLYQQNGVKFVKGA-SIKNLEAGSDGRVAAV-- 286 (488)
Q Consensus 224 ~~l~~~g~~v~-lv~~~---------~~~l~~---~~~~~~~-~~~~~~l~~~GV~v~~~~-~v~~i~~~~~~~v~~v-- 286 (488)
..-.+.|.+-. -++-- +.++|+ .|.-+.. +..++ ..|-+.+.-+ --+++..++++.++++
T Consensus 1941 gtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~---~~g~dpr~y~vltk~f~~~~~g~v~gl~~ 2017 (2142)
T KOG0399|consen 1941 GTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKE---HYGSDPRTYSVLTKRFIGDDNGNVTGLET 2017 (2142)
T ss_pred ccchhhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHH---HhCCCcceeeeeeeeeeccCCCceeeEEE
Confidence 87777775422 12111 112221 1111111 11111 1122211111 1122222223332222
Q ss_pred ----------------EeCC-CcEEEcCEEEEeecCccC-ChhhhhcCCccc-CCCEEe-CCCCCCCCCCEEEEceeccc
Q 011351 287 ----------------KLED-GSTIDADTIVIGIGAKPT-VSPFERVGLNSS-VGGIQV-DGQFRTRMPGIFAIGDVAAF 346 (488)
Q Consensus 287 ----------------~l~~-g~~i~~D~vi~a~G~~p~-~~~~~~~gl~~~-~g~i~v-d~~~~t~~~~Ifa~GD~a~~ 346 (488)
+..+ .+.++||+||++.|+... ....++++++.+ ++.|.+ ++.+.|+++.+||+|||-..
T Consensus 2018 vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrg 2097 (2142)
T KOG0399|consen 2018 VRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRG 2097 (2142)
T ss_pred EEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccccccccceeecccccCC
Confidence 2222 246899999999999744 345778888876 344544 45688999999999999975
Q ss_pred CC
Q 011351 347 PL 348 (488)
Q Consensus 347 ~~ 348 (488)
..
T Consensus 2098 qs 2099 (2142)
T KOG0399|consen 2098 QS 2099 (2142)
T ss_pred ce
Confidence 44
No 83
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.86 E-value=1.7e-21 Score=199.04 Aligned_cols=300 Identities=21% Similarity=0.288 Sum_probs=155.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----CCCC--------------CCCccc-cCCCCCCCCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YERP--------------ALTKGY-LFPLDKKPARL 111 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~----~~~~--------------~l~~~~-~~~~~~~~~~~ 111 (488)
.++|+|||||++||++|++|.+.|+ +++++|+++... |... ..++.. .++....+.+.
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~---~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~ 77 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGL---EVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDY 77 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT----EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCC
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC---CCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCC
Confidence 3799999999999999999999988 899999998654 1110 011111 12222223333
Q ss_pred CCcccccCCCCCCCCHhHHHHCCC--eEEeCCcEEEEeCCC-------cEEEeCC-Cc--EEEeccEEeccCCCCCc-CC
Q 011351 112 PGFHTCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEK-------QTLITNS-GK--LLKYGSLIVATGCTASR-FP 178 (488)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~v~~id~~~-------~~v~~~~-g~--~i~yd~lVlAtG~~~~~-~~ 178 (488)
|.+... .+...++..+.+.+++ .++++++|++++... ..|++++ |+ +-.||+||+|||....+ +|
T Consensus 78 p~f~~~--~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P 155 (531)
T PF00743_consen 78 PDFPSH--SEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIP 155 (531)
T ss_dssp SSSEBH--HHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-
T ss_pred CCCCCH--HHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCC
Confidence 332211 1112233445566666 478889999987532 2566644 32 35799999999975321 22
Q ss_pred C--CCCCC-CCc-EEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc-Cccccc------
Q 011351 179 E--KIGGY-LPG-VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LLQRLF------ 247 (488)
Q Consensus 179 ~--~~g~~-~~g-v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~-~l~~~~------ 247 (488)
. ++|.+ ..| +.+.++..+. ...++|+|+|||+|.+|+++|..+.....+|++..|+.. ++++..
T Consensus 156 ~~~~~G~e~F~G~i~HS~~yr~~-----~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~ 230 (531)
T PF00743_consen 156 EPSFPGLEKFKGEIIHSKDYRDP-----EPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPF 230 (531)
T ss_dssp ----CTGGGHCSEEEEGGG--TG-----GGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----------------
T ss_pred hhhhhhhhcCCeeEEccccCcCh-----hhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccc
Confidence 1 23321 222 2222222221 124789999999999999999999999889988877632 222211
Q ss_pred ----------------CHHHHHH---------------------------------HHHHHHHcCcEEEcCCeEEEEEeC
Q 011351 248 ----------------TPSLAQR---------------------------------YEQLYQQNGVKFVKGASIKNLEAG 278 (488)
Q Consensus 248 ----------------~~~~~~~---------------------------------~~~~l~~~GV~v~~~~~v~~i~~~ 278 (488)
+..+.+. +...+....|++.. .|++++.+
T Consensus 231 D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~--~I~~~~~~ 308 (531)
T PF00743_consen 231 DMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKP--DIKRFTEN 308 (531)
T ss_dssp --------------------------------------------------------------------EE---EEEE-SS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccc
Confidence 0001111 11111222222221 24444321
Q ss_pred CCCcEEEEEeCCCcEE-EcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCC---CCCCCEEEEceecccCCccCCcc
Q 011351 279 SDGRVAAVKLEDGSTI-DADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFR---TRMPGIFAIGDVAAFPLKMYDRT 354 (488)
Q Consensus 279 ~~~~v~~v~l~~g~~i-~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~---t~~~~Ifa~GD~a~~~~~~~~~~ 354 (488)
+|.++||+++ ++|.||+|||++.+.+++++.-+...++.+..-.++- ...|++..+|=+... |
T Consensus 309 ------~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~~~~LYk~vfp~~~~~ptLafIG~~~~~-----g-- 375 (531)
T PF00743_consen 309 ------SVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVDDNRVRLYKHVFPPNLDHPTLAFIGLVQPF-----G-- 375 (531)
T ss_dssp ------EEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S-SSSSSEETTTEETETTSTTEEESS-SBSS-----S--
T ss_pred ------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----c--
Confidence 5778999875 6999999999999888887764444333332222221 235789888854321 1
Q ss_pred cccccHHHHHHHHHHHHHHHhcCC
Q 011351 355 ARVEHVDHARQSAQHCIKALLSAQ 378 (488)
Q Consensus 355 ~~~~~~~~A~~~g~~~a~~i~~~~ 378 (488)
..+..+..||+.+|+-+.|..
T Consensus 376 ---~~fp~~ElQArw~a~v~sG~~ 396 (531)
T PF00743_consen 376 ---SIFPIFELQARWAARVFSGRV 396 (531)
T ss_dssp ----HHHHHHHHHHHHHHHHTTSS
T ss_pred ---ccccccccccccccccccccc
Confidence 134568889999998887643
No 84
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.83 E-value=1.7e-22 Score=183.37 Aligned_cols=188 Identities=30% Similarity=0.479 Sum_probs=129.1
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHH
Q 011351 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE 132 (488)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (488)
||||||||+||++||.+|++.+. +++||++.+..+|....++...+............. . .....+.+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~---~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~ 70 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGA---KVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPA-R------LFKLVDQLKN 70 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS---EEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHH-H------HGHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCC---eEEEEecccccccccccccccccccccccccccccc-c------cccccccccc
Confidence 79999999999999999998776 899999887554432222211110000000000000 0 0012233467
Q ss_pred CCCeEEeCCcEEEEeCCCcEE----------EeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHH
Q 011351 133 KGIEMIYQDPVTSIDIEKQTL----------ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202 (488)
Q Consensus 133 ~~i~~~~~~~v~~id~~~~~v----------~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~ 202 (488)
.+++++.++++.+++...+.+ ...++.++.||+||||||+.+.. +.+++. +.....+...+++.+..
T Consensus 71 ~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~-~~i~g~--~~~~~~~~~~~~~~~~~ 147 (201)
T PF07992_consen 71 RGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRT-PNIPGE--EVAYFLRGVDDAQRFLE 147 (201)
T ss_dssp HTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEE-ESSTTT--TTECBTTSEEHHHHHHT
T ss_pred ceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccce-eecCCC--ccccccccccccccccc
Confidence 899998888999999887742 22345679999999999988763 454553 22233456677888888
Q ss_pred hhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCc
Q 011351 203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR 282 (488)
Q Consensus 203 ~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~ 282 (488)
.....++++|||
T Consensus 148 ~~~~~~~v~VvG-------------------------------------------------------------------- 159 (201)
T PF07992_consen 148 LLESPKRVAVVG-------------------------------------------------------------------- 159 (201)
T ss_dssp HSSTTSEEEEES--------------------------------------------------------------------
T ss_pred cccccccccccc--------------------------------------------------------------------
Confidence 777777999999
Q ss_pred EEEEEeCCCcEEEcCEEEEeecCccCChhh-hhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccC
Q 011351 283 VAAVKLEDGSTIDADTIVIGIGAKPTVSPF-ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFP 347 (488)
Q Consensus 283 v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~-~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~ 347 (488)
.+++ +..+++.+ +|++.||+++||+.|||||+|||+..+
T Consensus 160 --------------------------~~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 160 --------------------------TEFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY 200 (201)
T ss_dssp --------------------------TTTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred --------------------------ccccccccccccccccccccccccccccccccccccccccC
Confidence 3555 78888875 788999999999999999999999864
No 85
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.72 E-value=2.4e-17 Score=149.72 Aligned_cols=177 Identities=23% Similarity=0.305 Sum_probs=100.1
Q ss_pred EEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC------CCCCC-CccccCCCCCCCCCCC--Ccc----------
Q 011351 55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY------ERPAL-TKGYLFPLDKKPARLP--GFH---------- 115 (488)
Q Consensus 55 vIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~------~~~~l-~~~~~~~~~~~~~~~~--~~~---------- 115 (488)
+|||||++||++|.+|.+.|.+ +++|+|+++...- ..+.+ +..........+ .+. ...
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~--~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 77 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGID--PVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLP-DFESFSFDDSPEWRWPHD 77 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS---CCCHSCHHHHHHHHHSBS
T ss_pred CEECcCHHHHHHHHHHHhCCCC--cEEEEeCCCCCCCeeEEeCCCCccccCccccccccCC-cccccccccCCCCCCCcc
Confidence 7999999999999999999872 3999999865421 00001 000000000000 000 000
Q ss_pred cccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCC--CCCcCCCCCC-CCCCcEEE
Q 011351 116 TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGC--TASRFPEKIG-GYLPGVHY 190 (488)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~--~~~~~~~~~g-~~~~gv~~ 190 (488)
...+.+...++..+.++++++++++++|+++..++ ..|++++++++.+|+||+|||. .|. .|.+++ ... ...+
T Consensus 78 ~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~-~p~~~g~~~~-~~~h 155 (203)
T PF13738_consen 78 FPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPR-IPDIPGSAFR-PIIH 155 (203)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB----S-TTGGCS-EEEE
T ss_pred cCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCC-cccccccccc-ceEe
Confidence 01111112233455567899999999999998765 4788989888999999999996 443 344455 222 2333
Q ss_pred ecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 011351 191 IRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 241 (488)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~ 241 (488)
..+..+. ....+++|+|||+|.+|++++..|.+.+.+|+++.|++.
T Consensus 156 ~~~~~~~-----~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 156 SADWRDP-----EDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp GGG-STT-----GGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred hhhcCCh-----hhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 2221111 123679999999999999999999999999999999874
No 86
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.71 E-value=5e-16 Score=148.57 Aligned_cols=177 Identities=24% Similarity=0.393 Sum_probs=106.6
Q ss_pred EEEeccEEeccCCCCCcCCCCCC---CCCCcEEEecCHHHHHHHHHhh-------------hcCCeEEEE---CCCH---
Q 011351 160 LLKYGSLIVATGCTASRFPEKIG---GYLPGVHYIRDVADADALISSL-------------EKAKKVVVV---GGGY--- 217 (488)
Q Consensus 160 ~i~yd~lVlAtG~~~~~~~~~~g---~~~~gv~~~~~~~~~~~~~~~~-------------~~~~~vvVv---G~G~--- 217 (488)
++....+|+|||-.+........ +..+++.+- .+.+++...- +.+|+|+.| |+..
T Consensus 298 e~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~---lElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~ 374 (622)
T COG1148 298 ELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITN---LELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQV 374 (622)
T ss_pred EEEeceEEEEccccccCcchhhhcCCCCCcchhhH---HHHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCccc
Confidence 46788999999987653222111 112333221 2233333211 245677765 6544
Q ss_pred -----H------HHHHHHHHHhC--CCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEE
Q 011351 218 -----I------GMEVAAAAVGW--KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 284 (488)
Q Consensus 218 -----~------g~e~A~~l~~~--g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~ 284 (488)
+ ++--|...+++ ..+|+++...-+- ++....+++.+.-++.||+++.+ ++.+|.+.+++++
T Consensus 375 ~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRa----fG~~yEefY~~~Q~~~gV~fIRG-rvaei~e~p~~~l- 448 (622)
T COG1148 375 GNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRA----FGKDYEEFYVRSQEDYGVRFIRG-RVAEIAEFPKKKL- 448 (622)
T ss_pred CChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeec----cCccHHHHHHhhhhhhchhhhcC-ChHHheeCCCCee-
Confidence 1 12223333333 2467776655433 44455667777666899999988 5777776666663
Q ss_pred EEEeCC---C--cEEEcCEEEEeecCccCCh---hhhhcCCccc-CCCEEeC-CCCC---CCCCCEEEEceecc
Q 011351 285 AVKLED---G--STIDADTIVIGIGAKPTVS---PFERVGLNSS-VGGIQVD-GQFR---TRMPGIFAIGDVAA 345 (488)
Q Consensus 285 ~v~l~~---g--~~i~~D~vi~a~G~~p~~~---~~~~~gl~~~-~g~i~vd-~~~~---t~~~~Ifa~GD~a~ 345 (488)
.|..+| | .++++|+||+++|..|... +.+-+||..+ +|++... +.++ ++.++||.+|-+.+
T Consensus 449 ~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqg 522 (622)
T COG1148 449 IVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQG 522 (622)
T ss_pred EEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccC
Confidence 344433 3 4689999999999998643 4566788765 6776654 4444 58899999996655
No 87
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.69 E-value=1.6e-15 Score=150.25 Aligned_cols=290 Identities=15% Similarity=0.194 Sum_probs=160.2
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHH-HcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCC
Q 011351 48 ANENREFVIVGGGNAAGYAARTFV-EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT 126 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~-~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (488)
....++|+||||||||++||.+|. +.|+ +|+|+|+.+.+. .+.. +-..+.... . .. ....+
T Consensus 36 ~~~~krVAIVGaGPAGlyaA~~Ll~~~g~---~VtlfEk~p~pg----GLvR-~GVaPdh~~--~---k~-----v~~~f 97 (506)
T PTZ00188 36 EAKPFKVGIIGAGPSALYCCKHLLKHERV---KVDIFEKLPNPY----GLIR-YGVAPDHIH--V---KN-----TYKTF 97 (506)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhcCC---eEEEEecCCCCc----cEEE-EeCCCCCcc--H---HH-----HHHHH
Confidence 345689999999999999999876 4555 899999998742 1111 111111100 0 00 00111
Q ss_pred HhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCC--------CC-CCC----CCcEEEecC
Q 011351 127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--------KI-GGY----LPGVHYIRD 193 (488)
Q Consensus 127 ~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~--------~~-g~~----~~gv~~~~~ 193 (488)
...+...++++..+..+ +..++.++-. -.||.||+|||+.+..+|. +. +.+ ++|++..++
T Consensus 98 ~~~~~~~~v~f~gnv~V------G~Dvt~eeL~-~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~d 170 (506)
T PTZ00188 98 DPVFLSPNYRFFGNVHV------GVDLKMEELR-NHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARD 170 (506)
T ss_pred HHHHhhCCeEEEeeeEe------cCccCHHHHH-hcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehhe
Confidence 22234456776643222 1122222222 3799999999998653330 00 332 456654432
Q ss_pred H-----HHHH-----HHHHh---hhcCCeEEEECCCHHHHHHHHHHH--------------------hCC-CcEEEEecC
Q 011351 194 V-----ADAD-----ALISS---LEKAKKVVVVGGGYIGMEVAAAAV--------------------GWK-LDTTIIFPE 239 (488)
Q Consensus 194 ~-----~~~~-----~~~~~---~~~~~~vvVvG~G~~g~e~A~~l~--------------------~~g-~~v~lv~~~ 239 (488)
+ .+.+ ..... +...++++|||.|++++++|..|. +.+ .+|+++.|+
T Consensus 171 fV~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRR 250 (506)
T PTZ00188 171 LIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRR 250 (506)
T ss_pred EEEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEec
Confidence 2 0110 11111 124578999999999999999753 222 257888777
Q ss_pred CcCccc----------------------cc------CH-----H--------HHHHHHHHHH----------HcCcEEEc
Q 011351 240 NHLLQR----------------------LF------TP-----S--------LAQRYEQLYQ----------QNGVKFVK 268 (488)
Q Consensus 240 ~~~l~~----------------------~~------~~-----~--------~~~~~~~~l~----------~~GV~v~~ 268 (488)
.-.-.. -+ +. . ..+.+.+..+ .+-+.+++
T Consensus 251 Gp~qaaFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F 330 (506)
T PTZ00188 251 GFWQSSFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIF 330 (506)
T ss_pred CHHHhCCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEc
Confidence 211000 00 00 0 1112222221 14467888
Q ss_pred CCeEEEEEeCCCCcEEEEEeC-----------CC--cEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCC--C
Q 011351 269 GASIKNLEAGSDGRVAAVKLE-----------DG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT--R 333 (488)
Q Consensus 269 ~~~v~~i~~~~~~~v~~v~l~-----------~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t--~ 333 (488)
..++.+|.. +++++.++.++ .| ++++||+|+-++|++... +.. +..++ .+... ..+. .
T Consensus 331 ~~sP~ei~~-~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p--~~g--~pFd~-~~~n~-~grv~~~ 403 (506)
T PTZ00188 331 YFEIRQIRP-IDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSN--FAE--NLYNQ-SVQMF-KEDIGQH 403 (506)
T ss_pred cCCceEEEC-CCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCC--CCC--CCccc-cCCCC-CCcccCC
Confidence 888888874 24677777665 23 368999999999998742 222 33331 22221 1222 3
Q ss_pred CCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHH
Q 011351 334 MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 374 (488)
Q Consensus 334 ~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i 374 (488)
.|++|++|-+...|....|. +...|...+..+.+.+
T Consensus 404 ~~g~Y~~GWiKrGP~GvIgt-----n~~da~~t~~~v~~d~ 439 (506)
T PTZ00188 404 KFAIFKAGWFDKGPKGNIAS-----QILNSKNSTHLVLNFL 439 (506)
T ss_pred CCCcEEeeecCcCCCceecc-----CcccHHHHHHHHHHHH
Confidence 79999999999888766554 2334555555555544
No 88
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.68 E-value=8.4e-16 Score=149.25 Aligned_cols=249 Identities=20% Similarity=0.287 Sum_probs=131.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCcc------ccCCCC--CCCCCCCCccc---ccC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKG------YLFPLD--KKPARLPGFHT---CVG 119 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~------~~~~~~--~~~~~~~~~~~---~~~ 119 (488)
.+|+++||.||++|+.|..|.+.+ ..++..+|+.+.+.++.-.+..+ ++.+.- ..|..--.|.+ ..+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~--~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~ 79 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHG--DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG 79 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH-----EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcC--CCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence 468999999999999999999986 34899999998766553221111 111100 00000000110 000
Q ss_pred C-------CCCCCC-------HhHHH-HCCCeEEeCCcEEEEeCCC------cEEEeC----CCcEEEeccEEeccCCCC
Q 011351 120 S-------GGERQT-------PEWYK-EKGIEMIYQDPVTSIDIEK------QTLITN----SGKLLKYGSLIVATGCTA 174 (488)
Q Consensus 120 ~-------~~~~~~-------~~~~~-~~~i~~~~~~~v~~id~~~------~~v~~~----~g~~i~yd~lVlAtG~~~ 174 (488)
. +...-. .+|+. +..-.+..+.+|++|++.. .+|.+. +++.+.++.||||||..|
T Consensus 80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P 159 (341)
T PF13434_consen 80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQP 159 (341)
T ss_dssp -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE
T ss_pred ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCC
Confidence 0 000000 12222 2344477888999998764 356663 346799999999999887
Q ss_pred CcCCCCCC-CC-CCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCcCccc-----
Q 011351 175 SRFPEKIG-GY-LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQR----- 245 (488)
Q Consensus 175 ~~~~~~~g-~~-~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~--~v~lv~~~~~~l~~----- 245 (488)
. +|.... .. .+.+.+..+.... .+.....++|+|||||.+|.|++..|.+.+. +|+++.|++.+.+.
T Consensus 160 ~-iP~~~~~~~~~~~v~Hss~~~~~---~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f 235 (341)
T PF13434_consen 160 R-IPEWFQDLPGSPRVFHSSEYLSR---IDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPF 235 (341)
T ss_dssp ----GGGGGGTT-TTEEEGGGHHHH---HT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CC
T ss_pred C-CCcchhhcCCCCCEEEehHhhhc---cccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccc
Confidence 6 343222 11 2556665433222 1124578999999999999999999998875 79999998655431
Q ss_pred ---ccCHHH-------------------------------HHHHHHH-----H-HHcCcEEEcCCeEEEEEeCCCCcEEE
Q 011351 246 ---LFTPSL-------------------------------AQRYEQL-----Y-QQNGVKFVKGASIKNLEAGSDGRVAA 285 (488)
Q Consensus 246 ---~~~~~~-------------------------------~~~~~~~-----l-~~~GV~v~~~~~v~~i~~~~~~~v~~ 285 (488)
.++|+. .+.+.+. + .+..+.++.++.|+.++..+++.+ .
T Consensus 236 ~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~-~ 314 (341)
T PF13434_consen 236 VNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGV-R 314 (341)
T ss_dssp HHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSE-E
T ss_pred hhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEE-E
Confidence 233322 1111111 1 223578999999999998765444 4
Q ss_pred EEeCC-----CcEEEcCEEEEeecCc
Q 011351 286 VKLED-----GSTIDADTIVIGIGAK 306 (488)
Q Consensus 286 v~l~~-----g~~i~~D~vi~a~G~~ 306 (488)
+.+.+ ..++++|.||+|||++
T Consensus 315 l~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 315 LTLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp EEEEETTT--EEEEEESEEEE---EE
T ss_pred EEEEECCCCCeEEEecCEEEEcCCcc
Confidence 55544 2468999999999985
No 89
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.67 E-value=4.5e-16 Score=154.35 Aligned_cols=242 Identities=19% Similarity=0.263 Sum_probs=142.2
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----------------CCC--CCCCcccc-CCCCCCC
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----------------YER--PALTKGYL-FPLDKKP 108 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~----------------~~~--~~l~~~~~-~~~~~~~ 108 (488)
.++.++|+|||||+|||++|+.|++.|+ +++++|+.+... |++ ..+++.+. ++....+
T Consensus 3 ~~~~~~vaIIGAG~sGL~~ar~l~~~g~---~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~ 79 (448)
T KOG1399|consen 3 MMMSKDVAVIGAGPAGLAAARELLREGH---EVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFP 79 (448)
T ss_pred cCCCCceEEECcchHHHHHHHHHHHCCC---CceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCc
Confidence 4567899999999999999999999988 899999998543 111 11111111 1111112
Q ss_pred CCCCCc-ccccCCCCCCCCHhHHHHCCC--eEEeCCcEEEEeCCC---cEEEeCCC----cEEEeccEEeccCCCC-CcC
Q 011351 109 ARLPGF-HTCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEK---QTLITNSG----KLLKYGSLIVATGCTA-SRF 177 (488)
Q Consensus 109 ~~~~~~-~~~~~~~~~~~~~~~~~~~~i--~~~~~~~v~~id~~~---~~v~~~~g----~~i~yd~lVlAtG~~~-~~~ 177 (488)
.+.+.+ +. ..+...++..+.+.+++ .+.++++|..++... ..|.+.+. +..-||.|++|||... ..+
T Consensus 80 ~~~~~~~p~--~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~ 157 (448)
T KOG1399|consen 80 ERDPRYFPS--HREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRI 157 (448)
T ss_pred ccCcccCCC--HHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCC
Confidence 221111 00 00111223344455665 477778888888765 25655443 3678999999999873 224
Q ss_pred CCCCCC---CCCc-EEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHH
Q 011351 178 PEKIGG---YLPG-VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ 253 (488)
Q Consensus 178 ~~~~g~---~~~g-v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~ 253 (488)
|.+++. ..+| +.+. .+.-......+|+|+|||.|.+|.|++..++....+|.+..+ .-....
T Consensus 158 P~~~g~~~~~f~G~~iHS-----~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~~-------- 223 (448)
T KOG1399|consen 158 PQIPGPGIESFKGKIIHS-----HDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVHV-------- 223 (448)
T ss_pred CcCCCCchhhcCCcceeh-----hhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee-cccccc--------
Confidence 444442 2222 1111 111111224679999999999999999999888888877654 100000
Q ss_pred HHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcC
Q 011351 254 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 316 (488)
Q Consensus 254 ~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~g 316 (488)
.....+ -.++..+.. |+.+++ ++ .+.+.++....+|.+|+|||+.-...+++..+
T Consensus 224 ~~~~~~-~~~~~~~~~--i~~~~e--~~---~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~ 278 (448)
T KOG1399|consen 224 EPPEIL-GENLWQVPS--IKSFTE--DG---SVFEKGGPVERVDRIIFCTGYKYKFPFLETLG 278 (448)
T ss_pred ccccee-ecceEEccc--cccccC--cc---eEEEcCceeEEeeeEEEeeeeEeecceeccCC
Confidence 000001 112222222 455542 22 35667777889999999999998877766543
No 90
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.65 E-value=6.4e-14 Score=132.47 Aligned_cols=292 Identities=18% Similarity=0.265 Sum_probs=176.9
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCcc------cc----CCCC-CCC--------
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKG------YL----FPLD-KKP-------- 108 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~------~~----~~~~-~~~-------- 108 (488)
++...|++.||-||+-|+.|..|.+.+. .+...+|+.+.+.|+.-++..+ ++ ...+ ..+
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~--~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~ 79 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSG--LKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLH 79 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccC--cceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHH
Confidence 4567899999999999999999998763 4799999999876653221111 00 0000 000
Q ss_pred --CCCCCcccccC----CCCCCCCHhHHHHCCCeEEeCCcEE---EEeCCCc---EEEeCCCcEEEeccEEeccCCCCCc
Q 011351 109 --ARLPGFHTCVG----SGGERQTPEWYKEKGIEMIYQDPVT---SIDIEKQ---TLITNSGKLLKYGSLIVATGCTASR 176 (488)
Q Consensus 109 --~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~v~---~id~~~~---~v~~~~g~~i~yd~lVlAtG~~~~~ 176 (488)
.++-.|....- .......-.|....--.++++++|+ .++.+.. .+.+.+++.+.+..|||++|..|..
T Consensus 80 ~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~I 159 (436)
T COG3486 80 EHGRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYI 159 (436)
T ss_pred HcchHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCC
Confidence 00000000000 0001112244444456677888998 4444433 3666778889999999999999874
Q ss_pred CCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCcCccc-------
Q 011351 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHLLQR------- 245 (488)
Q Consensus 177 ~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~----g~~v~lv~~~~~~l~~------- 245 (488)
++.......+.+++... ...-...+...++|.|||+|.+|.|+-..|... ..++.++.|+..+++.
T Consensus 160 P~~f~~l~~~~vfHss~---~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~ 236 (436)
T COG3486 160 PPCFRSLIGERVFHSSE---YLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGL 236 (436)
T ss_pred ChHHhCcCccceeehHH---HHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhh
Confidence 43322222234544321 111112223345599999999999999988754 3357889998766552
Q ss_pred -ccCHHHHHH-------------------------------HHHHH------HHcCcEEEcCCeEEEEEeCCCCcEEEEE
Q 011351 246 -LFTPSLAQR-------------------------------YEQLY------QQNGVKFVKGASIKNLEAGSDGRVAAVK 287 (488)
Q Consensus 246 -~~~~~~~~~-------------------------------~~~~l------~~~GV~v~~~~~v~~i~~~~~~~v~~v~ 287 (488)
.+.|+..++ +.... .+..|.+..++.+..++..++|++ .+.
T Consensus 237 e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~-~l~ 315 (436)
T COG3486 237 EYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRY-RLT 315 (436)
T ss_pred hhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceE-EEE
Confidence 112221111 11111 234688999999999998766653 444
Q ss_pred eC-----CCcEEEcCEEEEeecCccCCh-hhhhcC--Cc-ccCCCEEeCCCCCCCC-----CCEEEEceecc
Q 011351 288 LE-----DGSTIDADTIVIGIGAKPTVS-PFERVG--LN-SSVGGIQVDGQFRTRM-----PGIFAIGDVAA 345 (488)
Q Consensus 288 l~-----~g~~i~~D~vi~a~G~~p~~~-~~~~~g--l~-~~~g~i~vd~~~~t~~-----~~Ifa~GD~a~ 345 (488)
+. ..++++.|.||+|||++.... |++.+. |. +++|...|+.+++... -.||+.|-+..
T Consensus 316 ~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~h 387 (436)
T COG3486 316 LRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELH 387 (436)
T ss_pred EeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEeccccc
Confidence 32 335789999999999995544 666554 22 4578899998877521 25999986654
No 91
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.65 E-value=1.5e-15 Score=152.93 Aligned_cols=189 Identities=17% Similarity=0.167 Sum_probs=113.5
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-CCCCCccccCCCCCCCCCCCCcccc------cCC
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-RPALTKGYLFPLDKKPARLPGFHTC------VGS 120 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~------~~~ 120 (488)
.+++++|+|||||++||++|++|++.|.+ +++|+|++....-. +-....+...........++.++.. ...
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~--~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~ 82 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVP--DFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFA 82 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCC--cEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcc
Confidence 46678999999999999999999999984 29999999744311 0000000111111111111111110 001
Q ss_pred CCCCCCHhHHHHCCCe--EEeCCcEEEEeCCC----cEEEeCCCcE--EEeccEEeccCCCCC-cCCCCCCCCCCcEEEe
Q 011351 121 GGERQTPEWYKEKGIE--MIYQDPVTSIDIEK----QTLITNSGKL--LKYGSLIVATGCTAS-RFPEKIGGYLPGVHYI 191 (488)
Q Consensus 121 ~~~~~~~~~~~~~~i~--~~~~~~v~~id~~~----~~v~~~~g~~--i~yd~lVlAtG~~~~-~~~~~~g~~~~gv~~~ 191 (488)
+...+..++++++++. +..++.|..++.+. .+|+++++.. +.+|+||+|||.... ..|.++|.+......+
T Consensus 83 ~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~ 162 (443)
T COG2072 83 EIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRIL 162 (443)
T ss_pred cHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceEE
Confidence 1122344566666654 34445555555543 3678877765 459999999997432 1333333322111122
Q ss_pred cCHHHHHHHHH-hhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC
Q 011351 192 RDVADADALIS-SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (488)
Q Consensus 192 ~~~~~~~~~~~-~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~ 242 (488)
+ +.+..+ ....+|+|+|||+|.+|++++..|.+.+.+|+++.|++..
T Consensus 163 H----S~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 163 H----SADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred c----hhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 1 222211 2347999999999999999999999999999999998643
No 92
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.63 E-value=6.9e-15 Score=136.89 Aligned_cols=157 Identities=18% Similarity=0.233 Sum_probs=100.1
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCH
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (488)
....++|.|||+||||+.+|..|.++. ++.+|+|+|+.+.+ | .+....+.+.+....+. ...+.
T Consensus 17 qs~~p~vcIVGsGPAGfYtA~~LLk~~-~~~~Vdi~Ek~PvP-F---GLvRyGVAPDHpEvKnv-----------intFt 80 (468)
T KOG1800|consen 17 QSSTPRVCIVGSGPAGFYTAQHLLKRH-PNAHVDIFEKLPVP-F---GLVRYGVAPDHPEVKNV-----------INTFT 80 (468)
T ss_pred ccCCceEEEECCCchHHHHHHHHHhcC-CCCeeEeeecCCcc-c---ceeeeccCCCCcchhhH-----------HHHHH
Confidence 345679999999999999999999973 36799999999874 2 12221122322222211 12334
Q ss_pred hHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHH----H--H
Q 011351 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADA----L--I 201 (488)
Q Consensus 128 ~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~----~--~ 201 (488)
..++.....+..+..| +..+.+..- +-.||.+|||.|+...+-..+||.+++++...+.+-..-. . .
T Consensus 81 ~~aE~~rfsf~gNv~v------G~dvsl~eL-~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~l 153 (468)
T KOG1800|consen 81 KTAEHERFSFFGNVKV------GRDVSLKEL-TDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNL 153 (468)
T ss_pred HHhhccceEEEeccee------cccccHHHH-hhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCccccc
Confidence 4555566666655333 112222111 2479999999999866556788988889887654322211 0 0
Q ss_pred HhhhcCCeEEEECCCHHHHHHHHHHH
Q 011351 202 SSLEKAKKVVVVGGGYIGMEVAAAAV 227 (488)
Q Consensus 202 ~~~~~~~~vvVvG~G~~g~e~A~~l~ 227 (488)
+....+.+++|||.|..++++|..|.
T Consensus 154 e~dls~~~vvIvG~GNVAlDvARiLl 179 (468)
T KOG1800|consen 154 EPDLSGRKVVIVGNGNVALDVARILL 179 (468)
T ss_pred CcccccceEEEEccCchhhhhhhhhh
Confidence 11123679999999999999999875
No 93
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.63 E-value=5.5e-14 Score=139.62 Aligned_cols=159 Identities=16% Similarity=0.151 Sum_probs=114.6
Q ss_pred EEEECCCHHHHHHH-HHHH----hCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEE
Q 011351 210 VVVVGGGYIGMEVA-AAAV----GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 284 (488)
Q Consensus 210 vvVvG~G~~g~e~A-~~l~----~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~ 284 (488)
=.|++.+.+|+|.+ ..+. ..|.+|+++...+..++. .++.+.+.+.+++.|++++.+++|.+++.. ++.+.
T Consensus 218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG---~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~ 293 (422)
T PRK05329 218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG---LRLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVT 293 (422)
T ss_pred CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch---HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEE
Confidence 36889999999998 5554 469999999988887764 378888999999999999999999999864 45555
Q ss_pred EEEeCCCc--EEEcCEEEEeecCccCChh-----------------------------------hhhcCCcccCCCEEeC
Q 011351 285 AVKLEDGS--TIDADTIVIGIGAKPTVSP-----------------------------------FERVGLNSSVGGIQVD 327 (488)
Q Consensus 285 ~v~l~~g~--~i~~D~vi~a~G~~p~~~~-----------------------------------~~~~gl~~~~g~i~vd 327 (488)
.+...+|+ .+++|.||+|+|..+...+ +...|+.+|+....+|
T Consensus 294 ~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~~ 373 (422)
T PRK05329 294 AVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPLD 373 (422)
T ss_pred EEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCccc
Confidence 55555553 5899999999998765433 1233444444444455
Q ss_pred CCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351 328 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 328 ~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
...++..+||||+|++...+++..-... -..|...|..++++++.
T Consensus 374 ~~g~~~~~nl~a~G~vl~g~d~~~~~~g----~Gva~~ta~~a~~~~~~ 418 (422)
T PRK05329 374 SQGGPVIENLYAAGAVLGGYDPIREGCG----SGVALATALHAAEQIAE 418 (422)
T ss_pred CCCCeeccceEEeeehhcCCchHHhCCC----chhHHHHHHHHHHHHHH
Confidence 5555678999999999998775432211 12466667777777663
No 94
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.55 E-value=1.8e-12 Score=126.20 Aligned_cols=313 Identities=20% Similarity=0.293 Sum_probs=171.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC----CCCCCCCCcccc-CCCCCCCCCCCC----cccccCC-
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA----PYERPALTKGYL-FPLDKKPARLPG----FHTCVGS- 120 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~----~~~~~~l~~~~~-~~~~~~~~~~~~----~~~~~~~- 120 (488)
+++|+|||||++|++.|.+|.+.-.+...|.|+|+.+.+ +|+.- .+...+ .+........|. |..+...
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~-~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~ 79 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTE-EPEHLLNVPAARMSAFAPDIPQDFVRWLQKQ 79 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCC-CchhhhccccccccccCCCCchHHHHHHHhc
Confidence 478999999999999999999976545569999998854 35421 111011 000000000000 0000000
Q ss_pred ------------CCCCCC-------------HhHHHHCC---CeEEeCCcEEEEeCCC----cEEEeCCCcEEEeccEEe
Q 011351 121 ------------GGERQT-------------PEWYKEKG---IEMIYQDPVTSIDIEK----QTLITNSGKLLKYGSLIV 168 (488)
Q Consensus 121 ------------~~~~~~-------------~~~~~~~~---i~~~~~~~v~~id~~~----~~v~~~~g~~i~yd~lVl 168 (488)
....+. ..+.++.. +.++. ++++++.... ..++..+|....+|-+|+
T Consensus 80 ~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~-~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vl 158 (474)
T COG4529 80 LQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIR-EEATSVRQDTNAGGYLVTTADGPSEIADIIVL 158 (474)
T ss_pred ccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEe-eeeecceeccCCceEEEecCCCCeeeeeEEEE
Confidence 000001 11112222 44443 4666665552 356778888889999999
Q ss_pred ccCCCCCcCCCCCCCCCCc-EEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCcCccc
Q 011351 169 ATGCTASRFPEKIGGYLPG-VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQR 245 (488)
Q Consensus 169 AtG~~~~~~~~~~g~~~~g-v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~--~v~lv~~~~~~l~~ 245 (488)
|||..+...+. -..++.+ ..+..+...+..+ ..+....+|+|+|+|.+.++....|..+|. .||++.|+. +.++
T Consensus 159 atgh~~~~~~~-~~~~~~~~~~~ia~~~~~~~l-d~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG-l~~~ 235 (474)
T COG4529 159 ATGHSAPPADP-AARDLKGSPRLIADPYPANAL-DGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG-LVPR 235 (474)
T ss_pred eccCCCCCcch-hhhccCCCcceeccccCCccc-ccccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc-cccC
Confidence 99976543222 1111221 1123333333222 223456679999999999999999999875 688888873 1111
Q ss_pred c-------------------------------------------------------------------------------
Q 011351 246 L------------------------------------------------------------------------------- 246 (488)
Q Consensus 246 ~------------------------------------------------------------------------------- 246 (488)
.
T Consensus 236 ~h~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w~~v~D~lR~~~~~~wq~l~~~er~rf~rH~~~~~dvHr 315 (474)
T COG4529 236 PHIPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDWRDVVDGLRPQGQWIWQNLPAVERRRFERHLRPIWDVHR 315 (474)
T ss_pred CCCCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHhhhhhhhHHHHhCCHHHHHHHHHhcccHHHHHH
Confidence 0
Q ss_pred --cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC--C-CcEEEcCEEEEeecCccCCh-----hhh---
Q 011351 247 --FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--D-GSTIDADTIVIGIGAKPTVS-----PFE--- 313 (488)
Q Consensus 247 --~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~--~-g~~i~~D~vi~a~G~~p~~~-----~~~--- 313 (488)
+.+.+...+.+.+.+.-++++-+ ++..|.....+..+.+... + -+++++|.||.|+|..+... ++.
T Consensus 316 ~R~a~~v~~~~~~~~a~G~~~l~ag-~~~~i~~~~eg~~v~~r~rg~~~~~~l~~~~VIn~~g~~~~~~~~s~~~L~sl~ 394 (474)
T COG4529 316 FRLAPAVQAAVPQLLAEGLLELVAG-RVVSIDREGEGRAVTYRERGKQHEEELDVDAVINTTGPAHDNSLSSDPFLRSLG 394 (474)
T ss_pred hhhhHHHHhhhhHHhhcchhheecC-ceeecccccCCceEEeeccccCccceeeeeEEEEcCCcCcCCCccchHHHHHHH
Confidence 00111111222223333344444 4555554444422222211 1 24689999999999876532 333
Q ss_pred hcCCcc---cCCCEEeCCCCCC------CCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011351 314 RVGLNS---SVGGIQVDGQFRT------RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 375 (488)
Q Consensus 314 ~~gl~~---~~g~i~vd~~~~t------~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~ 375 (488)
+.|+.. ...|+.|+++.+. ..+++||+|..+..... .+..+..-+.|+..+|..++
T Consensus 395 ~~Gl~rpd~~~lGl~v~~~~~v~~~~g~~~~~~fa~Gplt~G~f~------ei~~vP~v~~qa~~~A~~l~ 459 (474)
T COG4529 395 ENGLARPDPPGLGLDVSDDSEVLGEDGERVTGLFAAGPLTRGTFW------EIDGVPDVRVQAARLAAQLA 459 (474)
T ss_pred hCCccccCCCCCceeeCCCCcccCCCCccccCceeeccccCCchh------hhccChHHHHHHHHHHHHHh
Confidence 335442 2467889887664 46899999988864321 13334445566666776666
No 95
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.47 E-value=6.9e-13 Score=100.64 Aligned_cols=80 Identities=39% Similarity=0.653 Sum_probs=74.6
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 288 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l 288 (488)
+++|||+|++|+|+|..|.+++.+|+++++.+.++ +.+++++.+.+.+.+++.||++++++.+++++.++++ +. |++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~-~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~ 77 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL-PGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTL 77 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS-TTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh-hhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEE
Confidence 58999999999999999999999999999999999 4689999999999999999999999999999987666 65 888
Q ss_pred CCC
Q 011351 289 EDG 291 (488)
Q Consensus 289 ~~g 291 (488)
+||
T Consensus 78 ~~g 80 (80)
T PF00070_consen 78 EDG 80 (80)
T ss_dssp ETS
T ss_pred ecC
Confidence 886
No 96
>PRK09897 hypothetical protein; Provisional
Probab=99.36 E-value=3.8e-10 Score=115.46 Aligned_cols=170 Identities=16% Similarity=0.147 Sum_probs=95.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----CCCCCCCccccCCC--CCCCCCCCCccccc------
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YERPALTKGYLFPL--DKKPARLPGFHTCV------ 118 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~----~~~~~l~~~~~~~~--~~~~~~~~~~~~~~------ 118 (488)
+++|+|||||++|+++|.+|.+.+. ..+|+|||+..... |....-+..++.+. ...+...+.|..+.
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~-~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~ 79 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQT-PLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDS 79 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCC-CCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHH
Confidence 4689999999999999999998653 56899999976432 33211111111000 00000000011000
Q ss_pred -------------C-CCCCCC-----CHh-------HHHHCC--CeEEeCCcEEEEeCCCc--EEEeCC-CcEEEeccEE
Q 011351 119 -------------G-SGGERQ-----TPE-------WYKEKG--IEMIYQDPVTSIDIEKQ--TLITNS-GKLLKYGSLI 167 (488)
Q Consensus 119 -------------~-~~~~~~-----~~~-------~~~~~~--i~~~~~~~v~~id~~~~--~v~~~~-g~~i~yd~lV 167 (488)
. .-.-+. +.+ .+...+ +.++.+++|++++.... .+++.+ +..+.+|+||
T Consensus 80 ~~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VV 159 (534)
T PRK09897 80 HLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAV 159 (534)
T ss_pred HHHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEE
Confidence 0 000000 111 112334 67777789999987654 455544 4678999999
Q ss_pred eccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhC
Q 011351 168 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW 229 (488)
Q Consensus 168 lAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~ 229 (488)
+|||..+...+ .. .+ .++.+.++.. ....+ .+.+|+|+|.|+++++++..|...
T Consensus 160 LAtGh~~p~~~---~~-~~--~yi~~pw~~~-~~~~i-~~~~V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 160 IATGHVWPDEE---EA-TR--TYFPSPWSGL-MEAKV-DACNVGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred ECCCCCCCCCC---hh-hc--cccCCCCcch-hhcCC-CCCeEEEECCCHHHHHHHHHHHhc
Confidence 99997532111 11 11 2233333322 11222 368999999999999999998755
No 97
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.33 E-value=1.3e-12 Score=126.93 Aligned_cols=297 Identities=17% Similarity=0.245 Sum_probs=153.1
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC-------------------------------------------
Q 011351 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA------------------------------------------- 89 (488)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~------------------------------------------- 89 (488)
+|+|||+|.|||++|..|.+. + +|+|++|.+..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~---~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~ 84 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-F---RVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEF 84 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-C---cEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHH
Confidence 899999999999999999886 4 89999998721
Q ss_pred -----------------CCCCCCCCccccCC--CCCCCCCCCCcccccCCCCCCCCHhHHHH-CCCeEEeCCcEEEEeCC
Q 011351 90 -----------------PYERPALTKGYLFP--LDKKPARLPGFHTCVGSGGERQTPEWYKE-KGIEMIYQDPVTSIDIE 149 (488)
Q Consensus 90 -----------------~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~v~~id~~ 149 (488)
+|++..-. .+... ......++......+|+..+..+....++ .+|+++.+..+.++-.+
T Consensus 85 iv~~~~~ai~~Li~~Gv~FDr~~~g-~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~ 163 (518)
T COG0029 85 IVSEAPEAIEWLIDLGVPFDRDEDG-RLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIE 163 (518)
T ss_pred HHHhHHHHHHHHHHcCCCCcCCCCC-ceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhc
Confidence 23322110 01110 01111122222223444333333333333 69999988777777666
Q ss_pred Cc-EE---Ee-CC-C--cEEEeccEEeccCCCCCcCCCC---CCCCCCcEE-------EecCHHHHHHHHHhhhcCCeEE
Q 011351 150 KQ-TL---IT-NS-G--KLLKYGSLIVATGCTASRFPEK---IGGYLPGVH-------YIRDVADADALISSLEKAKKVV 211 (488)
Q Consensus 150 ~~-~v---~~-~~-g--~~i~yd~lVlAtG~~~~~~~~~---~g~~~~gv~-------~~~~~~~~~~~~~~~~~~~~vv 211 (488)
++ .+ .+ .. + ..+.++.+|||||.....+... .+...+|+- .+.+ .+..+...+.+
T Consensus 164 ~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~D-------lEFvQFHPT~l 236 (518)
T COG0029 164 DGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVAD-------LEFVQFHPTAL 236 (518)
T ss_pred CCceEeEEEEecCCCeEEEEecCeEEEecCCCcccccccCCCccccccHHHHHHHcCCeecC-------ccceeecccee
Confidence 55 22 22 22 2 3578899999999854333211 111111110 0110 01112222333
Q ss_pred EECCCHHHHHHHHHHHhCCCcEEEE-ecCCcCcccc------cCH-HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcE
Q 011351 212 VVGGGYIGMEVAAAAVGWKLDTTII-FPENHLLQRL------FTP-SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV 283 (488)
Q Consensus 212 VvG~G~~g~e~A~~l~~~g~~v~lv-~~~~~~l~~~------~~~-~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v 283 (488)
-.+.+.. .-+...++-.| -.|+ ..+.++++.. .+. -++..+...+++.|-+++++.+ .+. +.
T Consensus 237 ~~~~~~~-~LiSEAVRGEG--A~L~~~~GeRFm~~~~p~~ELAPRDVVARAI~~e~~~~g~~V~LD~s--~~~---~~-- 306 (518)
T COG0029 237 YIPQRRA-FLISEAVRGEG--AILVNEDGERFMPDYHPRGELAPRDVVARAIDAEMKRGGADVFLDIS--HIP---GD-- 306 (518)
T ss_pred cCCCCcc-ceeehhhhcCc--cEEECCCCCccccCCCCccccchHHHHHHHHHHHHHhcCCeEEEecc--CCC---ch--
Confidence 3331111 11112222222 2222 2344555421 122 3556677778887776666532 111 00
Q ss_pred EEEEeCCCcEEEc-CEEEEeecCccCChhhhhcCCc-ccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHH
Q 011351 284 AAVKLEDGSTIDA-DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD 361 (488)
Q Consensus 284 ~~v~l~~g~~i~~-D~vi~a~G~~p~~~~~~~~gl~-~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~ 361 (488)
.++ +.+|. .......|..|..+.+.-.... ...|||.||.+.||++|++||+|.|+.....-.++.+ .++.-
T Consensus 307 ---~~~--~rFP~I~~~c~~~GiD~~r~~IPV~PaaHY~mGGI~vD~~GrTsi~gLYAiGEvA~TGlHGANRLA-SNSLL 380 (518)
T COG0029 307 ---FFE--RRFPTIYAACLKAGIDPTREPIPVVPAAHYTMGGIAVDANGRTSIPGLYAIGEVACTGLHGANRLA-SNSLL 380 (518)
T ss_pred ---hhh--hhCcHHHHHHHHcCCCcccCccCccchhheecccEEECCCCcccCcccEEeeeecccccccchhhh-hhhHH
Confidence 000 11221 1112234544443322111111 2359999999999999999999999997665545544 33555
Q ss_pred HHHHHHHHHHHHHhcC
Q 011351 362 HARQSAQHCIKALLSA 377 (488)
Q Consensus 362 ~A~~~g~~~a~~i~~~ 377 (488)
.+...|+.+|++|.+.
T Consensus 381 E~vV~g~~aA~~i~~~ 396 (518)
T COG0029 381 ECLVFGKRAAEDIAGR 396 (518)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 6888899999999864
No 98
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.21 E-value=4.3e-11 Score=113.84 Aligned_cols=122 Identities=25% Similarity=0.288 Sum_probs=77.4
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCCCCCCc-----cccCCCC-----------
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-------YERPALTK-----GYLFPLD----------- 105 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~-------~~~~~l~~-----~~~~~~~----------- 105 (488)
++.++|+|||||+|||+||..+.+.|. +|+|||+.+... -.|+...+ .|+....
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~G~---~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~ 77 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKAGR---RVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALA 77 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhhcCC---EEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHH
Confidence 356899999999999999999999987 899999998431 01111100 0000000
Q ss_pred -CCCCCC------CCcccc---cCC---------CCCCCCHhHHHHCCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEec
Q 011351 106 -KKPARL------PGFHTC---VGS---------GGERQTPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYG 164 (488)
Q Consensus 106 -~~~~~~------~~~~~~---~~~---------~~~~~~~~~~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd 164 (488)
..+.++ .+.... .|. ...+.....+++.|++++++++|.+++.++ ..+.+.+|+++.+|
T Consensus 78 ~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d 157 (408)
T COG2081 78 RFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCD 157 (408)
T ss_pred hCCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEcc
Confidence 000000 000000 000 001112234567899999999999999874 68889999889999
Q ss_pred cEEeccCCC
Q 011351 165 SLIVATGCT 173 (488)
Q Consensus 165 ~lVlAtG~~ 173 (488)
.||||||..
T Consensus 158 ~lilAtGG~ 166 (408)
T COG2081 158 SLILATGGK 166 (408)
T ss_pred EEEEecCCc
Confidence 999999954
No 99
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.20 E-value=2e-09 Score=105.95 Aligned_cols=126 Identities=20% Similarity=0.292 Sum_probs=88.7
Q ss_pred ccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeecCccCChhhhhc------
Q 011351 244 QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERV------ 315 (488)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g--~~i~~D~vi~a~G~~p~~~~~~~~------ 315 (488)
|...+..+.+.+.+.+++.|++++.+..|.++... ++++..+.+.++ ..+.+|.+|+|+|..-...++++.
T Consensus 258 PSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Ep 336 (419)
T TIGR03378 258 PSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEP 336 (419)
T ss_pred CCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhcCceeee
Confidence 34445677888899999999999999999998854 566667776666 479999999999988322443321
Q ss_pred --CCcc--------------------cCCCEEeCCCCCC-----CCCCEEEEceecccCCccCCcccccccHHHHHHHHH
Q 011351 316 --GLNS--------------------SVGGIQVDGQFRT-----RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ 368 (488)
Q Consensus 316 --gl~~--------------------~~g~i~vd~~~~t-----~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~ 368 (488)
++++ ..=||.+|+++|. ..+|+||+|-+.+..++..-... -..|...|.
T Consensus 337 if~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~gcG----~GVai~Ta~ 412 (419)
T TIGR03378 337 IFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFEGCG----SGVAVSTAL 412 (419)
T ss_pred ccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhcCCC----chhHHHHHH
Confidence 2221 1136889999983 38999999999988775432211 124666777
Q ss_pred HHHHHH
Q 011351 369 HCIKAL 374 (488)
Q Consensus 369 ~~a~~i 374 (488)
.+|++|
T Consensus 413 ~aa~~i 418 (419)
T TIGR03378 413 HAAEQI 418 (419)
T ss_pred HHHHhh
Confidence 777765
No 100
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.11 E-value=3.3e-10 Score=115.80 Aligned_cols=34 Identities=29% Similarity=0.366 Sum_probs=31.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
++||||||||.||++||..+++.|. +|+||||.+
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~---~V~liek~~ 34 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGF---DVTIIGPGI 34 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCC---eEEEEeCCC
Confidence 3799999999999999999999887 899999975
No 101
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.05 E-value=1.8e-09 Score=112.29 Aligned_cols=37 Identities=32% Similarity=0.405 Sum_probs=33.2
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
....||||||+|.||++||.++++.|. +|+||||...
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~---~VilleK~~~ 50 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGR---RVLVVTKAAL 50 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCC---eEEEEEccCC
Confidence 446899999999999999999999876 8999999764
No 102
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.04 E-value=1.1e-09 Score=110.86 Aligned_cols=55 Identities=22% Similarity=0.290 Sum_probs=37.6
Q ss_pred cCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011351 320 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 375 (488)
Q Consensus 320 ~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~ 375 (488)
..|||.||.+.||++||+||+|.|+.....-.++.. -.+...+...|+.+++++.
T Consensus 330 t~GGi~vd~~~~t~i~gLYAaGE~a~~g~hG~nrl~-gnsl~~~lvfGr~Ag~~a~ 384 (433)
T PRK06175 330 FMGGIKVDLNSKTSMKNLYAFGEVSCTGVHGANRLA-SNSLLEGLVFSKRGAEKIN 384 (433)
T ss_pred ecCCEEECCCccccCCCeEecccccccCCCccccch-hHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999742111111111 2245556777777777764
No 103
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.00 E-value=7.2e-09 Score=102.02 Aligned_cols=68 Identities=21% Similarity=0.346 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcE-EEcCEEEEeecCccCChhhhhcCCcc
Q 011351 250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-IDADTIVIGIGAKPTVSPFERVGLNS 319 (488)
Q Consensus 250 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~-i~~D~vi~a~G~~p~~~~~~~~gl~~ 319 (488)
++...+.+.++++|++++++++|+.++..++| +..+.+.+|++ ++|+.||.|.|.... .+++.+|+..
T Consensus 154 ~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~Ad-~la~~~g~~~ 222 (429)
T COG0579 154 ELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYAD-PLAQMAGIPE 222 (429)
T ss_pred HHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhHH-HHHHHhCCCc
Confidence 45667777888889999999999999987665 55788888877 999999999998875 6677776655
No 104
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.98 E-value=5.1e-09 Score=107.81 Aligned_cols=56 Identities=30% Similarity=0.415 Sum_probs=38.3
Q ss_pred cCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351 320 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 320 ~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
..|||.||.+.+|++||+||+|+|+.....-.++.. -.+...|...|+.+++++..
T Consensus 332 t~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-g~sl~~~~v~G~~Ag~~aa~ 387 (488)
T TIGR00551 332 TCGGISVDDHGRTTVPGLYAIGEVACTGLHGANRLA-SNSLLECLVFGWSAAEDISR 387 (488)
T ss_pred ecCCEEECCCCcccCCCEEECccccccccCcccccc-hhHHHHHHHHHHHHHHHHHh
Confidence 358999999999999999999999742211111111 22455677777777777753
No 105
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.96 E-value=1.1e-08 Score=94.38 Aligned_cols=107 Identities=19% Similarity=0.275 Sum_probs=76.3
Q ss_pred cccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcE--EEcCEEEEeecCccCChhhh-------
Q 011351 243 LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGAKPTVSPFE------- 313 (488)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~--i~~D~vi~a~G~~p~~~~~~------- 313 (488)
-|..++-.+.+.+...++..|.-+..+-.|...+- .+++|+.|.+.+... +.+|..|+|+|.--...+..
T Consensus 252 PPSllGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~E 330 (421)
T COG3075 252 PPSLLGIRLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYE 330 (421)
T ss_pred CcchhhhhHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhc
Confidence 33344556788899999999999999999999884 478888898888765 56999999999644322211
Q ss_pred ---hcCCc------------------ccCCCEEeCCCCCCC-----CCCEEEEceecccCCcc
Q 011351 314 ---RVGLN------------------SSVGGIQVDGQFRTR-----MPGIFAIGDVAAFPLKM 350 (488)
Q Consensus 314 ---~~gl~------------------~~~g~i~vd~~~~t~-----~~~Ifa~GD~a~~~~~~ 350 (488)
++.+. ...=|+.+|+++|.+ ..|+||+|.+.+..++.
T Consensus 331 PIf~ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi 393 (421)
T COG3075 331 PIFDLDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPI 393 (421)
T ss_pred chhhcccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHH
Confidence 11110 011368888888863 67999999999877654
No 106
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.94 E-value=9.1e-10 Score=113.64 Aligned_cols=55 Identities=24% Similarity=0.401 Sum_probs=38.6
Q ss_pred CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351 321 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 321 ~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
.|||.||.+.+|++|++||+|+|+.......++.. -.+...+...|+.+++++..
T Consensus 332 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-g~sl~~~~v~G~~Ag~~aa~ 386 (510)
T PRK08071 332 MGGVKTNLDGETSIPGLYAIGEVACTGVHGANRLA-SNSLLEGLVFGKRAAEHILT 386 (510)
T ss_pred cCCEEECCCCcccCCCeEEcccccccccCCCcccc-hHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999852211111111 22455677778888888754
No 107
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.94 E-value=5.5e-10 Score=110.93 Aligned_cols=120 Identities=27% Similarity=0.361 Sum_probs=59.7
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCCCCCCc------cccCCCCCCCCCC-------
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-------YERPALTK------GYLFPLDKKPARL------- 111 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~-------~~~~~l~~------~~~~~~~~~~~~~------- 111 (488)
+||+|||||+|||+||..+++.|. +|+|+|+++... -.|..++. .|..........+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~---~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f 77 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGA---RVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRF 77 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT-----EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcC
Confidence 689999999999999999999987 899999998431 00111110 0111000000000
Q ss_pred -----------CCcccccCCC-----CCCC-------CHhHHHHCCCeEEeCCcEEEEeCCC---cEEEeCCCcEEEecc
Q 011351 112 -----------PGFHTCVGSG-----GERQ-------TPEWYKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGS 165 (488)
Q Consensus 112 -----------~~~~~~~~~~-----~~~~-------~~~~~~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~i~yd~ 165 (488)
.+........ ...+ +...+++.+++++++++|.+|..++ ..|.++++..+.+|+
T Consensus 78 ~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~ 157 (409)
T PF03486_consen 78 SPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADA 157 (409)
T ss_dssp -HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESE
T ss_pred CHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCE
Confidence 0000000000 0001 1223456799999999999997644 357776778899999
Q ss_pred EEeccCCCC
Q 011351 166 LIVATGCTA 174 (488)
Q Consensus 166 lVlAtG~~~ 174 (488)
||||||...
T Consensus 158 vILAtGG~S 166 (409)
T PF03486_consen 158 VILATGGKS 166 (409)
T ss_dssp EEE----SS
T ss_pred EEEecCCCC
Confidence 999999865
No 108
>PRK08275 putative oxidoreductase; Provisional
Probab=98.92 E-value=1.3e-08 Score=106.26 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=32.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
..+||||||||.||++||.++++.+. ..+|+||||.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~-g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNP-ALRVLLLEKANV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCC-CCeEEEEeCCCC
Confidence 45799999999999999999998752 348999999864
No 109
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.92 E-value=2.1e-07 Score=97.34 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=32.0
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
...||||||+|.||++||.++++.|. +|+||||.+
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~---~V~lveK~~ 38 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGF---KVAVISKVF 38 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCC---cEEEEEccC
Confidence 46799999999999999999999876 899999975
No 110
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.91 E-value=1.6e-08 Score=105.93 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=31.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
..||||||||.||++||..+++.+. ..+|+|+||..
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~-g~~V~lleK~~ 39 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANP-NLKIALISKVY 39 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCC-CCcEEEEEccC
Confidence 5799999999999999999998763 34899999985
No 111
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.91 E-value=7.3e-09 Score=108.32 Aligned_cols=37 Identities=22% Similarity=0.234 Sum_probs=31.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
..||+|||||.||++||..+++.+. ..+|+|+||...
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~-g~~V~lveK~~~ 39 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANP-HLDVALISKVYP 39 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCC-CCcEEEEEccCC
Confidence 4699999999999999999998753 348999999763
No 112
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.89 E-value=1.3e-08 Score=105.88 Aligned_cols=56 Identities=29% Similarity=0.394 Sum_probs=38.4
Q ss_pred cCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351 320 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 320 ~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
..|||.||.+.+|++|++||+|+|+.....-.++.. -.+...|...|+.+++++..
T Consensus 352 t~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-gnsl~~~~vfG~~Ag~~aa~ 407 (536)
T PRK09077 352 TCGGVMVDLHGRTDLDGLYAIGEVSYTGLHGANRMA-SNSLLECLVYGRSAAEDILS 407 (536)
T ss_pred ecCCeeECCCCccccCCEEecccccccccCCCccch-hhhHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999842211111211 22455567777777777754
No 113
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.89 E-value=5.8e-09 Score=109.43 Aligned_cols=38 Identities=29% Similarity=0.274 Sum_probs=32.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
...||||||||.||++||.++++.+. ..+|+|+||...
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~-g~~V~vleK~~~ 39 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDP-SLDVAVVAKTHP 39 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcC-CCcEEEEeccCC
Confidence 35799999999999999999998763 348999999863
No 114
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.88 E-value=1.4e-08 Score=105.58 Aligned_cols=55 Identities=24% Similarity=0.323 Sum_probs=37.5
Q ss_pred cCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011351 320 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 375 (488)
Q Consensus 320 ~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~ 375 (488)
..|||.||.+.+|++|++||+|+|+.......++.. -.+...+..-|+.+++.+.
T Consensus 346 ~~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanRL~-gnsl~e~lvfG~~a~~~~~ 400 (553)
T PRK07395 346 WMGGVVTDLNNQTSIPGLYAVGETASTGVHGANRLA-SNSLLECLVFAAQLAQLEL 400 (553)
T ss_pred cCCCeeECCCCcccCCCEEECccccccCCCcccchH-HHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999999999853222222222 1234456666777777664
No 115
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.85 E-value=5e-08 Score=102.52 Aligned_cols=33 Identities=33% Similarity=0.357 Sum_probs=30.4
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
||||||||.||++||..+++.|. +|+||||.+.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~---~V~lleK~~~ 33 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGL---NTAVISKVYP 33 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCC---cEEEEeccCC
Confidence 69999999999999999999887 8999999763
No 116
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.84 E-value=3.9e-08 Score=103.68 Aligned_cols=50 Identities=26% Similarity=0.283 Sum_probs=38.5
Q ss_pred cccccccccc----cccCCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 35 FQRRGFVVAY----SSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 35 ~~~~~~~~~~----~~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
...||++..- +.......||||||+|.||++||.++++.|. +|+||||..
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~DVlVIG~G~AGl~AAl~Aae~G~---~VilveK~~ 83 (635)
T PLN00128 30 ALSRFFSTGGGRSSYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGF---NTACITKLF 83 (635)
T ss_pred chhhhcccccccccCcceeeecCEEEECccHHHHHHHHHHHhcCC---cEEEEEcCC
Confidence 4556666532 1112345799999999999999999999886 899999986
No 117
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.84 E-value=2.3e-08 Score=104.99 Aligned_cols=40 Identities=30% Similarity=0.205 Sum_probs=32.9
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
..+.||||||||.||++||.++++.|..+.+|+|+||...
T Consensus 3 ~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~ 42 (577)
T PRK06069 3 VLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQP 42 (577)
T ss_pred ceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccC
Confidence 3457999999999999999999998721138999999764
No 118
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.84 E-value=4.2e-09 Score=110.48 Aligned_cols=103 Identities=20% Similarity=0.297 Sum_probs=76.6
Q ss_pred hcCCeEEEECCCH--HHHHHHHHHHhCCCcEEEEecCCcCcccc-------------cCHHHHHHHHHHHHHcCcEEEcC
Q 011351 205 EKAKKVVVVGGGY--IGMEVAAAAVGWKLDTTIIFPENHLLQRL-------------FTPSLAQRYEQLYQQNGVKFVKG 269 (488)
Q Consensus 205 ~~~~~vvVvG~G~--~g~e~A~~l~~~g~~v~lv~~~~~~l~~~-------------~~~~~~~~~~~~l~~~GV~v~~~ 269 (488)
...+++.|+|++. ++.+++..+...+.+++++.+..+++... ....+...+.+.+++.|++++++
T Consensus 155 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~~ 234 (574)
T PRK12842 155 PPLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTG 234 (574)
T ss_pred CCcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEeC
Confidence 4567888999988 89999999988888887765554444321 12346667778888999999999
Q ss_pred CeEEEEEeCCCCcEEEEEeCC--Cc-EEEcC-EEEEeecCccC
Q 011351 270 ASIKNLEAGSDGRVAAVKLED--GS-TIDAD-TIVIGIGAKPT 308 (488)
Q Consensus 270 ~~v~~i~~~~~~~v~~v~l~~--g~-~i~~D-~vi~a~G~~p~ 308 (488)
+.++++..+ ++++.+|...+ ++ .+.++ .||+|+|..++
T Consensus 235 ~~v~~l~~~-~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 276 (574)
T PRK12842 235 TPARELLTE-GGRVVGARVIDAGGERRITARRGVVLACGGFSH 276 (574)
T ss_pred CEEEEEEee-CCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence 999999864 57777776643 33 47786 79999997764
No 119
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.83 E-value=9.3e-08 Score=100.47 Aligned_cols=35 Identities=29% Similarity=0.283 Sum_probs=30.7
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
....||||||||.||++||.++++. . +|+|+||..
T Consensus 3 ~~~~DVlVIG~G~AGl~AAl~aa~~-~---~VilleK~~ 37 (583)
T PRK08205 3 QHRYDVVIVGAGGAGMRAAIEAGPR-A---RTAVLTKLY 37 (583)
T ss_pred ceeccEEEECccHHHHHHHHHHHhC-C---CEEEEeCCC
Confidence 3467999999999999999999875 4 899999975
No 120
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.83 E-value=1.5e-08 Score=111.59 Aligned_cols=36 Identities=31% Similarity=0.510 Sum_probs=32.3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
..+||||||||.||++||.++++.|. +|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~---~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGA---NVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCC---eEEEEecccc
Confidence 45799999999999999999999876 8999999763
No 121
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.82 E-value=6.4e-09 Score=109.88 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=31.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
...||||||||.||++||.++++.|. +|+||||..
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~---~VilieK~~ 68 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGY---NVKVFCYQD 68 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCC---cEEEEecCC
Confidence 45799999999999999999999887 899999754
No 122
>PLN02815 L-aspartate oxidase
Probab=98.82 E-value=2.2e-07 Score=97.24 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=30.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
...||||||+|.|||+||.++++.| +|+|+||.+.
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G----~VvlleK~~~ 62 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG----TVAIITKDEP 62 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC----CEEEEECCCC
Confidence 3579999999999999999999875 5999999773
No 123
>PRK06847 hypothetical protein; Provisional
Probab=98.81 E-value=1.8e-08 Score=100.57 Aligned_cols=123 Identities=19% Similarity=0.217 Sum_probs=73.8
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---------------CCCcc------------ccC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---------------ALTKG------------YLF 102 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~---------------~l~~~------------~~~ 102 (488)
++++|+|||||+||+++|..|++.|+ +|+|+|+.+....... .+... +..
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~---~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~ 79 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGI---AVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFD 79 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEEC
Confidence 46799999999999999999999988 8999999864211000 00000 000
Q ss_pred CCCCCCCCCC--C-----cc---cccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEecc
Q 011351 103 PLDKKPARLP--G-----FH---TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVAT 170 (488)
Q Consensus 103 ~~~~~~~~~~--~-----~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAt 170 (488)
........++ . +. ..........+.+.+.+.+++++.+++|++++.+.. .+.+.+|+++.+|.||.|+
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~Ad 159 (375)
T PRK06847 80 PDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGAD 159 (375)
T ss_pred CCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECc
Confidence 0000000000 0 00 000000001122333456899999999999876543 5667788889999999999
Q ss_pred CCCCC
Q 011351 171 GCTAS 175 (488)
Q Consensus 171 G~~~~ 175 (488)
|..+.
T Consensus 160 G~~s~ 164 (375)
T PRK06847 160 GLYSK 164 (375)
T ss_pred CCCcc
Confidence 98653
No 124
>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A ....
Probab=98.79 E-value=6e-08 Score=73.94 Aligned_cols=77 Identities=22% Similarity=0.362 Sum_probs=62.2
Q ss_pred ceeEeccccCCCCcceeeEEeeCCC--CcEEEEccCC-CcEEEEEEECCEEEEEEeecCChHHhhHHHHHHhcCCCCChh
Q 011351 387 YFYSRVFEYEGSPRKVWWQFFGDNV--GETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKA 463 (488)
Q Consensus 387 ~~~~~~~~~~g~~~~~~~~~~g~~~--~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (488)
||||++|+.. +|++|.+. .+++..++.+ .++..+|+++|+++|++. +|.+.++..++++|+.+..++.+
T Consensus 1 ~FWSdQ~~~~-------iq~~G~~~~~~~~v~rg~~~~~~~~~~y~~~g~lva~~~-vn~~~~~~~~rrli~~~~~~~~~ 72 (85)
T PF14759_consen 1 WFWSDQYGVR-------IQIAGLPGGADEVVVRGDPESGKFVAFYLRDGRLVAAVS-VNRPRDLRAARRLIAAGARVDPA 72 (85)
T ss_dssp EEEEEETTEE-------EEEEE-STTSSEEEEEEETTTTEEEEEEEETTEEEEEEE-ES-HHHHHHHHHHHHTT-B--HH
T ss_pred CeecccCCCe-------EEEEECCCCCCEEEEEccCCCCcEEEEEEcCCEEEEEEe-cCCHHHHHHHHHHHHCCCCcCHH
Confidence 7999999865 99999764 3677888876 789999999999999985 89999999999999999999999
Q ss_pred hhcCCCcH
Q 011351 464 KLQQASSV 471 (488)
Q Consensus 464 ~~~~~~~~ 471 (488)
.|.++..-
T Consensus 73 ~l~d~~~~ 80 (85)
T PF14759_consen 73 RLADPSVD 80 (85)
T ss_dssp HHHSTTSH
T ss_pred HhcCCCCC
Confidence 88777543
No 125
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.78 E-value=2.4e-07 Score=95.86 Aligned_cols=34 Identities=29% Similarity=0.280 Sum_probs=29.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
...||||||+|.||++||.+++ +. +|+||||.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~---~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PR---PVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cC---CEEEEECCCC
Confidence 4689999999999999999996 33 8999999874
No 126
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.77 E-value=1.1e-07 Score=100.33 Aligned_cols=35 Identities=31% Similarity=0.431 Sum_probs=31.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHc--CCCCCcEEEEcCCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAY 88 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~--g~~~~~V~lie~~~~ 88 (488)
..||||||||.||++||.++++. |. +|+||||.+.
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~---~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDL---KVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCC---eEEEEECCCc
Confidence 57999999999999999999997 65 8999999864
No 127
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.77 E-value=6.1e-08 Score=95.79 Aligned_cols=67 Identities=30% Similarity=0.489 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCC
Q 011351 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 317 (488)
Q Consensus 248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl 317 (488)
+..+.+.+.+.+++.|++++.+++|+++..+ ++.+.+|.+.+|+ +.+|.||+|+|.... .++...+.
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~g~-i~ad~vV~a~G~~s~-~l~~~~~~ 212 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSDGE-IRADRVVLAAGAWSP-QLLPLLGL 212 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETTEE-EEECEEEE--GGGHH-HHHHTTTT
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhhc-ccccccccccccc-cccceeEecccccce-eeeecccc
Confidence 4577888888899999999999999999965 5667679999998 999999999998664 45666554
No 128
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.76 E-value=4.3e-08 Score=103.00 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=31.8
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
...||||||||.||++||.++++.|. +|+||||..
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~---~V~vleK~~ 45 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGL---SVAVLSKVF 45 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCC---cEEEEeccC
Confidence 45799999999999999999999876 899999974
No 129
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.76 E-value=4e-08 Score=102.55 Aligned_cols=34 Identities=35% Similarity=0.438 Sum_probs=30.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
...||||||+|.||++||.++ +.|. +|+|+||.+
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~---~VilleK~~ 39 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGK---NVVIVSKGL 39 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCC---CEEEEEccC
Confidence 457999999999999999999 8776 899999975
No 130
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.75 E-value=3.4e-08 Score=103.29 Aligned_cols=33 Identities=33% Similarity=0.557 Sum_probs=29.2
Q ss_pred eEEEEcCchHHHHHHHHHH----HcCCCCCcEEEEcCCCC
Q 011351 53 EFVIVGGGNAAGYAARTFV----EHGMADGRLCIVSKEAY 88 (488)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~----~~g~~~~~V~lie~~~~ 88 (488)
||||||||.||++||.+++ +.|. +|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~---~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGL---KIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCC---eEEEEEccCC
Confidence 6999999999999999998 5565 8999999764
No 131
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.72 E-value=1.1e-07 Score=95.54 Aligned_cols=66 Identities=23% Similarity=0.319 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCC
Q 011351 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 317 (488)
Q Consensus 248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl 317 (488)
...+.+.+.+.+++.|+++++++.|.+++..+ +.+ .|.+.+| ++.+|.||+|+|.... .+++.+++
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~-~~~-~V~~~~g-~i~ad~vV~A~G~~s~-~l~~~~g~ 213 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHA-NGV-VVRTTQG-EYEARTLINCAGLMSD-RLAKMAGL 213 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecC-CeE-EEEECCC-EEEeCEEEECCCcchH-HHHHHhCC
Confidence 35677788888899999999999999998643 333 5667766 6999999999998764 45555554
No 132
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.72 E-value=1.1e-07 Score=100.02 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=32.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
++.||||||+|.||++||.++++.|. +|+||||.+.
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~---~V~lieK~~~ 37 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGV---HVDLFSLVPV 37 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCC---cEEEEEccCC
Confidence 45699999999999999999999887 8999998653
No 133
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.72 E-value=8.3e-07 Score=90.49 Aligned_cols=90 Identities=13% Similarity=0.156 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHhCCCcEEEEecCCc---CcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeC-CC--CcEEEEEeC
Q 011351 216 GYIGMEVAAAAVGWKLDTTIIFPENH---LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG-SD--GRVAAVKLE 289 (488)
Q Consensus 216 G~~g~e~A~~l~~~g~~v~lv~~~~~---~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~-~~--~~v~~v~l~ 289 (488)
-.++.|+...+.+.-.++.-+..... .-..+ .+.+...+.+.|+++||+|+++++|+++..+ ++ ++++++...
T Consensus 191 whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynq-yeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~ 269 (576)
T PRK13977 191 WHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQ-YESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLT 269 (576)
T ss_pred hhHHHHHHHHHHHHHHhhccCCccccccCCCCCc-hhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEE
Confidence 45788888888655222111111111 11111 2578888999999999999999999999864 23 567788774
Q ss_pred -CCc-----EEEcCEEEEeecCc
Q 011351 290 -DGS-----TIDADTIVIGIGAK 306 (488)
Q Consensus 290 -~g~-----~i~~D~vi~a~G~~ 306 (488)
+|+ ..+.|.||+++|.-
T Consensus 270 ~~~~~~~I~l~~~DlVivTnGs~ 292 (576)
T PRK13977 270 RNGKEETIDLTEDDLVFVTNGSI 292 (576)
T ss_pred eCCceeEEEecCCCEEEEeCCcC
Confidence 332 35789999999964
No 134
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.70 E-value=7.3e-08 Score=102.17 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=32.4
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
....||||||||.||++||.++++.|. +|+||||.+
T Consensus 3 ~~~~DVlVIG~G~AGl~AAi~Aae~G~---~VivleK~~ 38 (657)
T PRK08626 3 IIYTDALVIGAGLAGLRVAIAAAQRGL---DTIVLSLVP 38 (657)
T ss_pred ceeccEEEECccHHHHHHHHHHHHcCC---CEEEEeCCC
Confidence 446899999999999999999999887 899999865
No 135
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.69 E-value=1.7e-08 Score=105.48 Aligned_cols=108 Identities=19% Similarity=0.208 Sum_probs=76.3
Q ss_pred cCCeEEEECCCHHHHHHHHH-------HHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeC
Q 011351 206 KAKKVVVVGGGYIGMEVAAA-------AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 278 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~-------l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~ 278 (488)
.++.++++|++.++++++.. +.+++.+|+++...+..+. .++..+...+.+.+++.|+++++++.++++..+
T Consensus 159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~ 237 (557)
T PRK07843 159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLL-GMGQALAAGLRIGLQRAGVPVLLNTPLTDLYVE 237 (557)
T ss_pred ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcc-cCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEEe
Confidence 45678899999999998764 5555666666544433332 256677888888899999999999999999864
Q ss_pred CCCcEEEEEeC-CCc--EEEcC-EEEEee-cCccCChhhhhc
Q 011351 279 SDGRVAAVKLE-DGS--TIDAD-TIVIGI-GAKPTVSPFERV 315 (488)
Q Consensus 279 ~~~~v~~v~l~-~g~--~i~~D-~vi~a~-G~~p~~~~~~~~ 315 (488)
++++++|... +++ .+.++ .||+|+ |+.+|.++++..
T Consensus 238 -~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~~ 278 (557)
T PRK07843 238 -DGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRAKY 278 (557)
T ss_pred -CCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHHHh
Confidence 5677776653 443 47785 588855 566666655543
No 136
>PLN02463 lycopene beta cyclase
Probab=98.68 E-value=6.8e-08 Score=97.52 Aligned_cols=124 Identities=18% Similarity=0.258 Sum_probs=73.5
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC-CCcccc--CCC-CCCCCCCCC--------cc
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA-LTKGYL--FPL-DKKPARLPG--------FH 115 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~-l~~~~~--~~~-~~~~~~~~~--------~~ 115 (488)
....+||+|||||+||+++|..|++.|+ +|+|||+.+...+.+.. .....+ ... +......+. ..
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl---~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~ 101 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEAGL---SVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKK 101 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHCCC---eEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCC
Confidence 4556899999999999999999999887 89999997653322110 000000 000 000000000 00
Q ss_pred cccCCCCC--------CCCHhHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351 116 TCVGSGGE--------RQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 116 ~~~~~~~~--------~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
......+. ....+.+...+++++. ++|++++.... .|++++|+++.+|.||.|+|....
T Consensus 102 ~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~-~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 102 KDLDRPYGRVNRKKLKSKMLERCIANGVQFHQ-AKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred ccccCcceeEEHHHHHHHHHHHHhhcCCEEEe-eEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 00000000 1112223456899874 68888876543 577888988999999999998754
No 137
>PRK06834 hypothetical protein; Provisional
Probab=98.68 E-value=1.2e-07 Score=97.55 Aligned_cols=123 Identities=22% Similarity=0.313 Sum_probs=74.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CCC-CCC-------------ccccCCCCC-------
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERP-ALT-------------KGYLFPLDK------- 106 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~--~~~-~l~-------------~~~~~~~~~------- 106 (488)
..++|+||||||+|+++|..|++.|. +|+|||+.+...+ .|. .++ ..+......
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~---~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~ 78 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGV---DVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFA 78 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceee
Confidence 35899999999999999999999988 8999999864321 110 000 000000000
Q ss_pred -CCCCCCCcccc--cC-----CCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351 107 -KPARLPGFHTC--VG-----SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 107 -~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
...+...+... .+ ......+.+.+++.+++++.+++|+++..++. .+++.+|+++.+|+||.|.|....
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 79 ATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred eEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence 00000000000 00 00000112334567899999999999976654 456667778999999999998764
No 138
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.68 E-value=2.6e-07 Score=89.04 Aligned_cols=99 Identities=22% Similarity=0.317 Sum_probs=78.9
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc---Cc--------cc----ccCHHHHHHHHHHHHHcCcEEEcCCeEE
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---LL--------QR----LFTPSLAQRYEQLYQQNGVKFVKGASIK 273 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~---~l--------~~----~~~~~~~~~~~~~l~~~GV~v~~~~~v~ 273 (488)
+++|||+|+.|+++|..|.+.|.+|+++++.+. +. +. ..+.++...+.+.+++.|+++++ .+++
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~ 80 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI 80 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence 589999999999999999999999999997641 11 11 12357778888889999999999 7899
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh
Q 011351 274 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 310 (488)
Q Consensus 274 ~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~ 310 (488)
+++..+ .. ..+.+.+++++.+|.+|+|+|..|+..
T Consensus 81 ~v~~~~-~~-~~v~~~~~~~~~~d~liiAtG~~~~~~ 115 (300)
T TIGR01292 81 KVDLSD-RP-FKVKTGDGKEYTAKAVIIATGASARKL 115 (300)
T ss_pred EEEecC-Ce-eEEEeCCCCEEEeCEEEECCCCCcccC
Confidence 998643 22 246677888999999999999988643
No 139
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.67 E-value=4.6e-07 Score=86.75 Aligned_cols=110 Identities=17% Similarity=0.302 Sum_probs=86.5
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc------------------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------ 245 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~------------------------------------------ 245 (488)
..|+|||+|+.|+-+|..+.+.|.+|++++..+.+-.+
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d 83 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPED 83 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHH
Confidence 46899999999999999999999999999987332211
Q ss_pred -------------------cc-----CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 011351 246 -------------------LF-----TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 301 (488)
Q Consensus 246 -------------------~~-----~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~ 301 (488)
.| ...+.+.+.+.+++.||+++++++|.+++.++ ....+.+.+|+++.||.+|+
T Consensus 84 ~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~g~~i~~d~lil 161 (408)
T COG2081 84 FIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSSGETVKCDSLIL 161 (408)
T ss_pred HHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCCCCEEEccEEEE
Confidence 11 12466778888999999999999999999653 33468889998999999999
Q ss_pred eec--CccCC-------hhhhhcCCcc
Q 011351 302 GIG--AKPTV-------SPFERVGLNS 319 (488)
Q Consensus 302 a~G--~~p~~-------~~~~~~gl~~ 319 (488)
|+| ..|.+ .++++.|+..
T Consensus 162 AtGG~S~P~lGstg~gy~iA~~~G~~I 188 (408)
T COG2081 162 ATGGKSWPKLGSTGFGYPIARQFGHTI 188 (408)
T ss_pred ecCCcCCCCCCCCchhhHHHHHcCCcc
Confidence 999 44532 3577777664
No 140
>PRK10015 oxidoreductase; Provisional
Probab=98.66 E-value=7.8e-08 Score=97.29 Aligned_cols=123 Identities=17% Similarity=0.241 Sum_probs=71.4
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC---CCc---cccCCCC--CCCC--CCC------
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA---LTK---GYLFPLD--KKPA--RLP------ 112 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~---l~~---~~~~~~~--~~~~--~~~------ 112 (488)
+.++||+||||||||++||+.|++.|+ +|+|||+.+........ ++. ..+.+.. ..+. ...
T Consensus 3 ~~~~DViIVGgGpAG~~aA~~LA~~G~---~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~ 79 (429)
T PRK10015 3 DDKFDAIVVGAGVAGSVAALVMARAGL---DVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISF 79 (429)
T ss_pred ccccCEEEECcCHHHHHHHHHHHhCCC---eEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEE
Confidence 346899999999999999999999988 89999998764321100 000 0000000 0000 000
Q ss_pred -------Ccc--cc-----cCCCC--CC-C----CHhHHHHCCCeEEeCCcEEEEeCCCcEEE--eCCCcEEEeccEEec
Q 011351 113 -------GFH--TC-----VGSGG--ER-Q----TPEWYKEKGIEMIYQDPVTSIDIEKQTLI--TNSGKLLKYGSLIVA 169 (488)
Q Consensus 113 -------~~~--~~-----~~~~~--~~-~----~~~~~~~~~i~~~~~~~v~~id~~~~~v~--~~~g~~i~yd~lVlA 169 (488)
.+. .. ....+ .+ . +.+..++.|++++.+++|+++..++..+. ..++.++.+|.+|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~A 159 (429)
T PRK10015 80 LTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILA 159 (429)
T ss_pred EeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEc
Confidence 000 00 00000 01 1 12333557999999889998876544332 234557999999999
Q ss_pred cCCCC
Q 011351 170 TGCTA 174 (488)
Q Consensus 170 tG~~~ 174 (488)
+|...
T Consensus 160 dG~~s 164 (429)
T PRK10015 160 DGVNS 164 (429)
T ss_pred cCcch
Confidence 99754
No 141
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.66 E-value=1.1e-07 Score=91.32 Aligned_cols=120 Identities=22% Similarity=0.339 Sum_probs=69.4
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--CCCcc---c----------------cCCCCCCCCC
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP--ALTKG---Y----------------LFPLDKKPAR 110 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~--~l~~~---~----------------~~~~~~~~~~ 110 (488)
+||+|||||+||+++|..|++.|. +|+|+|+.+....... .+... . +.........
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~---~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGL---RVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVE 77 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEE
Confidence 589999999999999999999987 8999999875322100 00000 0 0000000000
Q ss_pred CC--C--cccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc--EEEeCC-CcEEEeccEEeccCCCC
Q 011351 111 LP--G--FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNS-GKLLKYGSLIVATGCTA 174 (488)
Q Consensus 111 ~~--~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~-g~~i~yd~lVlAtG~~~ 174 (488)
.+ . ............+.+...+.+++++.+++|+++..+.. .+.+.+ +.++.+|++|+|+|...
T Consensus 78 ~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 78 IPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred eccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 00 0 00000000111122334567899999999988765544 344343 45799999999999754
No 142
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.65 E-value=8.2e-08 Score=97.19 Aligned_cols=123 Identities=20% Similarity=0.293 Sum_probs=71.9
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---CCCcc---ccCCC--CCCC-CCCC-------
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---ALTKG---YLFPL--DKKP-ARLP------- 112 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~---~l~~~---~~~~~--~~~~-~~~~------- 112 (488)
..++||+|||||+||++||..|+++|+ +|+|||+.+....... .++.. .+.+. ...+ .+..
T Consensus 3 ~~~~DViIVGaGpAG~~aA~~La~~G~---~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~ 79 (428)
T PRK10157 3 EDIFDAIIVGAGLAGSVAALVLAREGA---QVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAF 79 (428)
T ss_pred cccCcEEEECcCHHHHHHHHHHHhCCC---eEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEE
Confidence 346999999999999999999999988 8999999865432110 00000 00000 0000 0000
Q ss_pred ----C---cccc-------cCCCCC-------CCCHhHHHHCCCeEEeCCcEEEEeCCCcEE--EeCCCcEEEeccEEec
Q 011351 113 ----G---FHTC-------VGSGGE-------RQTPEWYKEKGIEMIYQDPVTSIDIEKQTL--ITNSGKLLKYGSLIVA 169 (488)
Q Consensus 113 ----~---~~~~-------~~~~~~-------~~~~~~~~~~~i~~~~~~~v~~id~~~~~v--~~~~g~~i~yd~lVlA 169 (488)
+ +... ....+. ..+.+..++.|++++.+++|+++..++..+ ...++.++.+|.+|.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A 159 (428)
T PRK10157 80 MTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILA 159 (428)
T ss_pred EcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEE
Confidence 0 0000 000000 001223345799999999999987544332 3446678999999999
Q ss_pred cCCCC
Q 011351 170 TGCTA 174 (488)
Q Consensus 170 tG~~~ 174 (488)
+|...
T Consensus 160 ~G~~s 164 (428)
T PRK10157 160 DGVNS 164 (428)
T ss_pred eCCCH
Confidence 99754
No 143
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.64 E-value=9.5e-08 Score=97.31 Aligned_cols=98 Identities=15% Similarity=0.294 Sum_probs=73.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++|+|||||++|+.+|..|++.|. +|+|+++.+...- .... .+ .....+.
T Consensus 156 ~~~~vvIIGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l~-----------~~~~---~~-----------~~~~~~~ 207 (438)
T PRK07251 156 LPERLGIIGGGNIGLEFAGLYNKLGS---KVTVLDAASTILP-----------REEP---SV-----------AALAKQY 207 (438)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCccCC-----------CCCH---HH-----------HHHHHHH
Confidence 35689999999999999999999876 8999998765310 0000 00 0123566
Q ss_pred HHHCCCeEEeCCcEEEEeCCCcEE-EeCCCcEEEeccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQTL-ITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~~v-~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
+++.+++++.+++|++++.++..+ ...+++++.||.+++|+|..|.
T Consensus 208 l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 208 MEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPN 254 (438)
T ss_pred HHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCC
Confidence 788899999999999998765443 3345678999999999998876
No 144
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.64 E-value=1.5e-07 Score=94.49 Aligned_cols=123 Identities=21% Similarity=0.254 Sum_probs=73.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC---CCcc----ccCCCCC-CCCCCCC-ccccc--
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA---LTKG----YLFPLDK-KPARLPG-FHTCV-- 118 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~---l~~~----~~~~~~~-~~~~~~~-~~~~~-- 118 (488)
+++||+||||||||++||+.|++.|+ +|+|+|+.+...+.... ++.. +...... ....+.+ .....
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~---~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~ 78 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGL---DVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGE 78 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCC---eEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCC
Confidence 57899999999999999999999996 89999998765443211 1100 0000000 0000000 00000
Q ss_pred --------CCC-------CCCCCHhHHHHCCCeEEeCCcEEEEeCCCc--EEE-eCCCcEEEeccEEeccCCCCC
Q 011351 119 --------GSG-------GERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLI-TNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 119 --------~~~-------~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~-~~~g~~i~yd~lVlAtG~~~~ 175 (488)
+.. +...+.+..++.|.+++.++.++.+..++. .+. ..++.++.++.+|.|+|....
T Consensus 79 ~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~ 153 (396)
T COG0644 79 KVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSA 153 (396)
T ss_pred ceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchH
Confidence 000 011122344567999999999988876653 222 233357999999999997653
No 145
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.64 E-value=2.9e-07 Score=94.97 Aligned_cols=37 Identities=30% Similarity=0.477 Sum_probs=33.8
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
...++||||||||.|||.||.++++.|. +|+|+||.+
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~---~V~l~~K~~ 39 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGL---KVALLSKAP 39 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCC---cEEEEEccc
Confidence 4567899999999999999999999986 899999976
No 146
>PRK07190 hypothetical protein; Provisional
Probab=98.63 E-value=1.3e-07 Score=97.07 Aligned_cols=123 Identities=22% Similarity=0.239 Sum_probs=74.0
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-CCCC--------------CCCcccc-----------C
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-YERP--------------ALTKGYL-----------F 102 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~-~~~~--------------~l~~~~~-----------~ 102 (488)
+..++|+||||||+|+++|..|++.|. +|+|||+.+... ..+. .+...+. +
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi---~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~ 79 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGL---NTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVW 79 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCC---CEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEe
Confidence 446899999999999999999999988 799999987431 1110 0000000 0
Q ss_pred CCCCCC-------CCCCCc-c---cccC-CCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEe
Q 011351 103 PLDKKP-------ARLPGF-H---TCVG-SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIV 168 (488)
Q Consensus 103 ~~~~~~-------~~~~~~-~---~~~~-~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVl 168 (488)
...... ..+.+. . ...+ ......+.+.+.+.|++++.+++|+++..+.. .+++.+|+++.+++||.
T Consensus 80 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVg 159 (487)
T PRK07190 80 ANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIG 159 (487)
T ss_pred cCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEE
Confidence 000000 000000 0 0000 00000112344567999999999999876543 45667788899999999
Q ss_pred ccCCCC
Q 011351 169 ATGCTA 174 (488)
Q Consensus 169 AtG~~~ 174 (488)
|+|...
T Consensus 160 ADG~~S 165 (487)
T PRK07190 160 ADGSRS 165 (487)
T ss_pred CCCCCH
Confidence 999865
No 147
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.60 E-value=9.6e-08 Score=98.04 Aligned_cols=97 Identities=20% Similarity=0.330 Sum_probs=72.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
.++++|||||++|+.+|..|++.|. +|+|+++.+... |.+. . .+ .....+.+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l---~~~~--------~---~~-----------~~~~~~~l 221 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGS---KVTVIEMLDRIL---PGED--------A---EV-----------SKVVAKAL 221 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCCCCC---CCCC--------H---HH-----------HHHHHHHH
Confidence 4799999999999999999999876 899999876421 0000 0 00 01234567
Q ss_pred HHCCCeEEeCCcEEEEeCCCcE--EEeCCC--cEEEeccEEeccCCCCC
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQT--LITNSG--KLLKYGSLIVATGCTAS 175 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~~--v~~~~g--~~i~yd~lVlAtG~~~~ 175 (488)
++.+++++.+++|.+++.+... +.+.+| +++.+|.||+|+|..|.
T Consensus 222 ~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 222 KKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPN 270 (461)
T ss_pred HHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCccc
Confidence 7889999999999998866543 444556 47999999999998875
No 148
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.59 E-value=1.6e-07 Score=94.75 Aligned_cols=124 Identities=19% Similarity=0.248 Sum_probs=72.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CC-CCC-------------ccc-----------cC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RP-ALT-------------KGY-----------LF 102 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~~-~l~-------------~~~-----------~~ 102 (488)
++||+|||||++|+++|..|++.|. +.+|+|+|+.+..... +. .++ ..+ +.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~-g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 79 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAP-HLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVIT 79 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCC-CCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEE
Confidence 4789999999999999999999862 2389999998642110 00 000 000 00
Q ss_pred C-CCCCCCCC--CCccc-c-cCCC---------CCCCCHhHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccE
Q 011351 103 P-LDKKPARL--PGFHT-C-VGSG---------GERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSL 166 (488)
Q Consensus 103 ~-~~~~~~~~--~~~~~-~-~~~~---------~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~l 166 (488)
. ........ ..+.. . .+.. ....+.+.+.+.+++++.+++|++++.+.. .+++.+|+.+.+|.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~v 159 (403)
T PRK07333 80 DSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLL 159 (403)
T ss_pred eCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEE
Confidence 0 00000000 00000 0 0000 011122334556899999999999976554 466678888999999
Q ss_pred EeccCCCCC
Q 011351 167 IVATGCTAS 175 (488)
Q Consensus 167 VlAtG~~~~ 175 (488)
|.|+|....
T Consensus 160 I~AdG~~S~ 168 (403)
T PRK07333 160 VAADGARSK 168 (403)
T ss_pred EEcCCCChH
Confidence 999997653
No 149
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.59 E-value=2.9e-07 Score=92.46 Aligned_cols=125 Identities=22% Similarity=0.394 Sum_probs=74.6
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC--C-----CCCc---ccc-----CCC----CCCC
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER--P-----ALTK---GYL-----FPL----DKKP 108 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~--~-----~l~~---~~~-----~~~----~~~~ 108 (488)
+..++||+|||||++|+++|..|+++|+ +|+|||+.+...+.. + .++. ..+ ... ...+
T Consensus 3 ~~~~~dV~IvGaG~aGl~~A~~La~~G~---~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~ 79 (392)
T PRK08773 3 RRSRRDAVIVGGGVVGAACALALADAGL---SVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQP 79 (392)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhcCCC---EEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCc
Confidence 3456899999999999999999999988 899999976432210 0 0000 000 000 0000
Q ss_pred C-CC----------CCcccc-cCCC---C-------CCCCHhHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEec
Q 011351 109 A-RL----------PGFHTC-VGSG---G-------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYG 164 (488)
Q Consensus 109 ~-~~----------~~~~~~-~~~~---~-------~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd 164 (488)
. ++ ..+... .+.. + ...+.+.+++.+++++.+++|+++..+.. ++++++|+++.+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~ 159 (392)
T PRK08773 80 YRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAA 159 (392)
T ss_pred ccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeC
Confidence 0 00 000000 0000 0 00011224456899999999999876543 4666788889999
Q ss_pred cEEeccCCCCC
Q 011351 165 SLIVATGCTAS 175 (488)
Q Consensus 165 ~lVlAtG~~~~ 175 (488)
.||.|+|....
T Consensus 160 ~vV~AdG~~S~ 170 (392)
T PRK08773 160 LAIAADGAAST 170 (392)
T ss_pred EEEEecCCCch
Confidence 99999998763
No 150
>PRK06184 hypothetical protein; Provisional
Probab=98.59 E-value=2e-07 Score=96.72 Aligned_cols=123 Identities=15% Similarity=0.164 Sum_probs=72.3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-CC--------------CCCCccc-----------cCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-ER--------------PALTKGY-----------LFP 103 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~-~~--------------~~l~~~~-----------~~~ 103 (488)
.+.+|+||||||+|+++|..|+++|+ +|+|||+.+...- .+ -.+...+ .+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi---~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~ 78 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGV---SFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYR 78 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEe
Confidence 35899999999999999999999998 8999999864310 00 0000000 000
Q ss_pred CCCCC--CCCCC-cccccCCC-----------CCCCCHhHHHHCCCeEEeCCcEEEEeCCCc--EEEe---CCCcEEEec
Q 011351 104 LDKKP--ARLPG-FHTCVGSG-----------GERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLIT---NSGKLLKYG 164 (488)
Q Consensus 104 ~~~~~--~~~~~-~~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~---~~g~~i~yd 164 (488)
..... ..+.. ........ ....+.+.+.+.+++++.++++++++.+.. ++++ .+++++.+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~ 158 (502)
T PRK06184 79 DDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRAR 158 (502)
T ss_pred CCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeC
Confidence 00000 00000 00000000 001122334556899999999999976554 3444 556789999
Q ss_pred cEEeccCCCCC
Q 011351 165 SLIVATGCTAS 175 (488)
Q Consensus 165 ~lVlAtG~~~~ 175 (488)
+||.|+|....
T Consensus 159 ~vVgADG~~S~ 169 (502)
T PRK06184 159 YLVGADGGRSF 169 (502)
T ss_pred EEEECCCCchH
Confidence 99999998753
No 151
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.58 E-value=1.6e-07 Score=87.77 Aligned_cols=121 Identities=15% Similarity=0.150 Sum_probs=69.7
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCC-------------CCC-C-CCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK-------------KPA-R-LPG 113 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~-------------~~~-~-~~~ 113 (488)
...+||+|||||+||++||.+|++.|+ +|+|+|+.+...... ...+.+++... .+. . ..+
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~---~V~liEk~~~~Ggg~--~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g 97 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGL---KVAVFERKLSFGGGM--WGGGMLFNKIVVQEEADEILDEFGIRYKEVEDG 97 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCC---eEEEEecCCCCCCcc--ccCccccccccchHHHHHHHHHCCCCceeecCc
Confidence 346899999999999999999999887 899999987542210 00011111000 000 0 000
Q ss_pred cccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc-EE---EeC-----------CCcEEEeccEEeccCCCC
Q 011351 114 FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ-TL---ITN-----------SGKLLKYGSLIVATGCTA 174 (488)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~-~v---~~~-----------~g~~i~yd~lVlAtG~~~ 174 (488)
............+.+...+.|++++.+++|.++..++. .+ .+. +...+.++.+|+|||...
T Consensus 98 ~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 98 LYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred ceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 00000000011122334567999999988988864332 22 111 224689999999999754
No 152
>PRK07236 hypothetical protein; Provisional
Probab=98.57 E-value=1.4e-07 Score=94.49 Aligned_cols=124 Identities=14% Similarity=0.082 Sum_probs=72.0
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-C--CCcc---cc-----CCCCCC--CCCCCCcc
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-A--LTKG---YL-----FPLDKK--PARLPGFH 115 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~-~--l~~~---~~-----~~~~~~--~~~~~~~~ 115 (488)
+++++|+|||||++|+++|..|++.|+ +|+|+|+.+.....+. . +... .+ ...... +.....+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~ 80 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGW---DVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYL 80 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEE
Confidence 556899999999999999999999988 8999999864311110 0 0000 00 000000 00000000
Q ss_pred cccCCC-----C---C---CCCHhHH-HH-CCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351 116 TCVGSG-----G---E---RQTPEWY-KE-KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 116 ~~~~~~-----~---~---~~~~~~~-~~-~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
...+.. . . ..+.+.+ +. .+++++.+++|+++..+.. ++++++|+++.+|.||.|-|....
T Consensus 81 ~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 81 DRDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRST 155 (386)
T ss_pred eCCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCch
Confidence 000000 0 0 0011111 11 2467888999999976554 467788999999999999997653
No 153
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.55 E-value=1.8e-07 Score=87.16 Aligned_cols=120 Identities=17% Similarity=0.191 Sum_probs=69.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCC------CCCCCCCCcccc-cCC--
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLD------KKPARLPGFHTC-VGS-- 120 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~-~~~-- 120 (488)
..+||+|||||+||++||+.|++.|. +|+|+|++....... ...+.+++.. ....+..+.... .+.
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~---~V~vlEk~~~~Ggg~--~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~ 94 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGL---KVCVLERSLAFGGGS--WGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGY 94 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCCccc--cCCCcceecccccchHHHHHHHCCCCeeeccCce
Confidence 46899999999999999999999987 899999997643210 0000111000 000000000000 000
Q ss_pred ------CCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc--E---EEeC-----------CCcEEEeccEEeccCCCC
Q 011351 121 ------GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--T---LITN-----------SGKLLKYGSLIVATGCTA 174 (488)
Q Consensus 121 ------~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~---v~~~-----------~g~~i~yd~lVlAtG~~~ 174 (488)
+....+.+...+.+++++.++.|.++..++. . +.+. +...+.++.+|.|||...
T Consensus 95 ~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a 170 (254)
T TIGR00292 95 VVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA 170 (254)
T ss_pred EEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence 0011122334567999999889988875433 2 2222 124689999999999653
No 154
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.54 E-value=9.5e-07 Score=76.20 Aligned_cols=117 Identities=15% Similarity=0.307 Sum_probs=64.9
Q ss_pred EEEcCchHHHHHHHHHHHcC--CCCCcEEEEcCCCCC---CCCCCCCCccccCCCC----CCCCCC-CCcccccCCCC--
Q 011351 55 VIVGGGNAAGYAARTFVEHG--MADGRLCIVSKEAYA---PYERPALTKGYLFPLD----KKPARL-PGFHTCVGSGG-- 122 (488)
Q Consensus 55 vIIGgG~AGl~aA~~L~~~g--~~~~~V~lie~~~~~---~~~~~~l~~~~~~~~~----~~~~~~-~~~~~~~~~~~-- 122 (488)
+|||||++|++++.+|.+.. ....+|+|+|+.+.. +|.........+.... ..+.+. +.|..+.....
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 59999999999999999984 346699999996542 2322111100111000 000000 11111111000
Q ss_pred --------CCCCHh----H----H----HH--CCC--eEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCC
Q 011351 123 --------ERQTPE----W----Y----KE--KGI--EMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGC 172 (488)
Q Consensus 123 --------~~~~~~----~----~----~~--~~i--~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~ 172 (488)
...... + + +. .++ .++ ..+|++++... ..+.+.+|..+.+|+||||||.
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~-~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHV-RAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEE-eeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 001111 1 1 11 233 344 36899888764 4688899999999999999995
No 155
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.54 E-value=9e-08 Score=100.66 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=29.0
Q ss_pred EEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 54 vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
|||||+|.||++||.++++.|. +|+|+||.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~---~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGY---HVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCC---CEEEEEecC
Confidence 6999999999999999999887 899999986
No 156
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.54 E-value=4.4e-07 Score=95.40 Aligned_cols=102 Identities=21% Similarity=0.258 Sum_probs=65.5
Q ss_pred cCCeEEEECCCHHH-HHHHHHHHhCCCcEEEEecCCcCcc-------------cccCHHHHHHHHHHHHHcCcEEEcCCe
Q 011351 206 KAKKVVVVGGGYIG-MEVAAAAVGWKLDTTIIFPENHLLQ-------------RLFTPSLAQRYEQLYQQNGVKFVKGAS 271 (488)
Q Consensus 206 ~~~~vvVvG~G~~g-~e~A~~l~~~g~~v~lv~~~~~~l~-------------~~~~~~~~~~~~~~l~~~GV~v~~~~~ 271 (488)
...++.++|++.++ .+++..+...+..+.+..+..+++. ...+..+...+.+.+++.|+++++++.
T Consensus 160 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~ 239 (581)
T PRK06134 160 PLRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAEDLGVRIWESAP 239 (581)
T ss_pred ccccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHhCCCEEEcCCE
Confidence 34566677777655 6666666555444333222111110 012345667788888999999999999
Q ss_pred EEEEEeCCCCcEEEEEeC--CCc-EEEc-CEEEEeecCccC
Q 011351 272 IKNLEAGSDGRVAAVKLE--DGS-TIDA-DTIVIGIGAKPT 308 (488)
Q Consensus 272 v~~i~~~~~~~v~~v~l~--~g~-~i~~-D~vi~a~G~~p~ 308 (488)
++++..+ ++++.+|... ++. ++.+ +.||+|+|--.+
T Consensus 240 v~~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 240 ARELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred EEEEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 9998754 5777666553 333 5788 999999987654
No 157
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.53 E-value=1.4e-06 Score=88.06 Aligned_cols=62 Identities=16% Similarity=0.317 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC-----CcEEEcCEEEEeecCccCChhhhh
Q 011351 250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-----GSTIDADTIVIGIGAKPTVSPFER 314 (488)
Q Consensus 250 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~-----g~~i~~D~vi~a~G~~p~~~~~~~ 314 (488)
.+...+.+.+++.|++++.+++|++++.+ ++.+ .+.+.+ +.++.+|.||+|+|.... .++..
T Consensus 198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~-~v~~~~~~~~~~~~i~a~~vV~a~G~~s~-~l~~~ 264 (410)
T PRK12409 198 KFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGV-VLTVQPSAEHPSRTLEFDGVVVCAGVGSR-ALAAM 264 (410)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEE-EEEEEcCCCCccceEecCEEEECCCcChH-HHHHH
Confidence 45566777888999999999999999864 3333 233322 236999999999997653 34433
No 158
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.52 E-value=4.3e-06 Score=84.71 Aligned_cols=64 Identities=30% Similarity=0.493 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcC
Q 011351 250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 316 (488)
Q Consensus 250 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~g 316 (488)
.+...+.+.+++.|++++.++.|++++.. ++.+..+.+.++ ++.+|.||+|+|.... .++...+
T Consensus 202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~-~~~a~~VV~a~G~~~~-~l~~~~g 265 (416)
T PRK00711 202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGG-VITADAYVVALGSYST-ALLKPLG 265 (416)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCc-EEeCCEEEECCCcchH-HHHHHhC
Confidence 55667777788899999999999999864 445555666655 6999999999998653 4444433
No 159
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.51 E-value=2.3e-07 Score=70.18 Aligned_cols=78 Identities=18% Similarity=0.371 Sum_probs=58.5
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHH
Q 011351 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE 132 (488)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (488)
+|+|||||+.|+.+|..|++.|. +|+||++.+... +.+.. .. .....+++++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~---~vtli~~~~~~~---~~~~~-----------~~-----------~~~~~~~l~~ 52 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK---EVTLIERSDRLL---PGFDP-----------DA-----------AKILEEYLRK 52 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS---EEEEEESSSSSS---TTSSH-----------HH-----------HHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCc---EEEEEeccchhh---hhcCH-----------HH-----------HHHHHHHHHH
Confidence 68999999999999999999886 899999887632 11110 00 1234567888
Q ss_pred CCCeEEeCCcEEEEeCCCc--EEEeCCC
Q 011351 133 KGIEMIYQDPVTSIDIEKQ--TLITNSG 158 (488)
Q Consensus 133 ~~i~~~~~~~v~~id~~~~--~v~~~~g 158 (488)
.|+++++++.+.+++.+.. +|+++||
T Consensus 53 ~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 53 RGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp TTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred CCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 9999999999999987654 3666654
No 160
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.50 E-value=7.1e-07 Score=88.78 Aligned_cols=57 Identities=18% Similarity=0.254 Sum_probs=40.7
Q ss_pred cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC
Q 011351 247 FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 305 (488)
Q Consensus 247 ~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~ 305 (488)
+...+...++...++...+++++++|+++..+..+ ..+.+.+|.++.+|.||+++..
T Consensus 210 ~~gG~~~l~~al~~~l~~~i~~~~~V~~i~~~~~~--~~~~~~~g~~~~~D~VI~t~p~ 266 (444)
T COG1232 210 LRGGLQSLIEALAEKLEAKIRTGTEVTKIDKKGAG--KTIVDVGGEKITADGVISTAPL 266 (444)
T ss_pred cCccHHHHHHHHHHHhhhceeecceeeEEEEcCCc--cEEEEcCCceEEcceEEEcCCH
Confidence 34445555555555555669999999999975333 3577888989999999998654
No 161
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.50 E-value=4.9e-07 Score=90.78 Aligned_cols=124 Identities=17% Similarity=0.278 Sum_probs=72.1
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC--------CC-------c--cccCCCC---CCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA--------LT-------K--GYLFPLD---KKP 108 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~--------l~-------~--~~~~~~~---~~~ 108 (488)
.+.+||+|||||++|+++|..|++.|+ +|+|||+.+...+.... ++ + +++.... ..+
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~---~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~ 79 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGF---SVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHP 79 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCC---EEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcc
Confidence 456899999999999999999999987 89999997632221000 00 0 0000000 000
Q ss_pred C-C-----C-CCccc-----ccCCC--CCCC---C----HhHHHHC-CCeEEeCCcEEEEeCCCc--EEEeCCCcEEEec
Q 011351 109 A-R-----L-PGFHT-----CVGSG--GERQ---T----PEWYKEK-GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYG 164 (488)
Q Consensus 109 ~-~-----~-~~~~~-----~~~~~--~~~~---~----~~~~~~~-~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd 164 (488)
. . . .+... ..... +... + .+.+... +++++.+++|+++..+.. .+.+++++++.+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~ 159 (391)
T PRK08020 80 YRRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAK 159 (391)
T ss_pred cceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeC
Confidence 0 0 0 00000 00000 0000 1 1122333 899998889998875543 4666788889999
Q ss_pred cEEeccCCCCC
Q 011351 165 SLIVATGCTAS 175 (488)
Q Consensus 165 ~lVlAtG~~~~ 175 (488)
.||.|.|....
T Consensus 160 ~vI~AdG~~S~ 170 (391)
T PRK08020 160 LVIGADGANSQ 170 (391)
T ss_pred EEEEeCCCCch
Confidence 99999998653
No 162
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.49 E-value=2.1e-06 Score=92.05 Aligned_cols=57 Identities=19% Similarity=0.271 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
..+...+.+.+++ |++++.++.|++++.. ++.+ .|.+.+|+.+.+|.||+|+|....
T Consensus 408 ~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~~-~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 408 AELCRALLALAGQ-QLTIHFGHEVARLERE-DDGW-QLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred HHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCEE-EEEECCCcEEECCEEEECCCCCcc
Confidence 4566777777777 9999999999999864 3444 377788877899999999998754
No 163
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.49 E-value=4.1e-07 Score=91.24 Aligned_cols=118 Identities=16% Similarity=0.194 Sum_probs=68.7
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CCCccccC--C-CCCCCCCCCC--------cccccCC
Q 011351 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-ALTKGYLF--P-LDKKPARLPG--------FHTCVGS 120 (488)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~-~l~~~~~~--~-~~~~~~~~~~--------~~~~~~~ 120 (488)
||+|||||+||+++|..|++.|. +|+|||+++..+..+. ......+. . .......+.+ .......
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~---~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGL---RVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGT 77 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCC---eEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCC
Confidence 69999999999999999999887 8999999865432211 00000000 0 0000000000 0000000
Q ss_pred --------CCCCCCHhHHHHCCCeEEeCCcEEEEeCC-C--cEEEeCCCcEEEeccEEeccCCCC
Q 011351 121 --------GGERQTPEWYKEKGIEMIYQDPVTSIDIE-K--QTLITNSGKLLKYGSLIVATGCTA 174 (488)
Q Consensus 121 --------~~~~~~~~~~~~~~i~~~~~~~v~~id~~-~--~~v~~~~g~~i~yd~lVlAtG~~~ 174 (488)
.......+.+.+.+++++. ++|..+... . ..+++++|+++.++.||.|+|..+
T Consensus 78 ~~~~i~~~~l~~~l~~~~~~~gv~~~~-~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 78 AYGSVDSTRLHEELLQKCPEGGVLWLE-RKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred ceeEEcHHHHHHHHHHHHHhcCcEEEc-cEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 0001112333456888864 578888765 2 356777887899999999999875
No 164
>PRK09126 hypothetical protein; Provisional
Probab=98.49 E-value=9.2e-07 Score=88.84 Aligned_cols=123 Identities=24% Similarity=0.332 Sum_probs=72.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC-------CCc---------ccc---CCCCCCCC-
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA-------LTK---------GYL---FPLDKKPA- 109 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~-------l~~---------~~~---~~~~~~~~- 109 (488)
++++|+|||||++|+++|..|++.|+ +|+|+|+.+......+. ++. ++. ......+.
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~ 78 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGL---KVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLR 78 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCC---cEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccc
Confidence 46899999999999999999999998 89999998652110000 000 000 00000000
Q ss_pred -------CCCCccccc----CC-CCC-----CCCH----hHH-HHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEecc
Q 011351 110 -------RLPGFHTCV----GS-GGE-----RQTP----EWY-KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGS 165 (488)
Q Consensus 110 -------~~~~~~~~~----~~-~~~-----~~~~----~~~-~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~ 165 (488)
......... .. ... .... +.+ +..+++++.+++|+++..... .|++++|+++.+|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~ 158 (392)
T PRK09126 79 DAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARL 158 (392)
T ss_pred eEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCE
Confidence 000000000 00 000 0001 111 235899999999999876543 56677888899999
Q ss_pred EEeccCCCCC
Q 011351 166 LIVATGCTAS 175 (488)
Q Consensus 166 lVlAtG~~~~ 175 (488)
||.|.|....
T Consensus 159 vI~AdG~~S~ 168 (392)
T PRK09126 159 LVAADSRFSA 168 (392)
T ss_pred EEEeCCCCch
Confidence 9999997654
No 165
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.48 E-value=1.1e-06 Score=88.24 Aligned_cols=39 Identities=26% Similarity=0.449 Sum_probs=34.5
Q ss_pred cCCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
|+++.+||+|||||++|+++|..|++.|+ +|+|||+.+.
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~---~v~liE~~~~ 41 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGA---SVALVAPEPP 41 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCC---eEEEEeCCCC
Confidence 34556899999999999999999999987 8999999864
No 166
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.48 E-value=1.3e-07 Score=98.19 Aligned_cols=57 Identities=28% Similarity=0.418 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 306 (488)
Q Consensus 249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~ 306 (488)
..+.+.+.+.+++.|+++++++.|++|..+ ++++..|.+++|+++.+|.||++++..
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHLADGERLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcHH
Confidence 467788888899999999999999999864 456668889999899999999998763
No 167
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.48 E-value=3.8e-07 Score=82.24 Aligned_cols=114 Identities=25% Similarity=0.381 Sum_probs=67.8
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC------------------CCCCCCC-----------cc---
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP------------------YERPALT-----------KG--- 99 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~------------------~~~~~l~-----------~~--- 99 (488)
.+|+|||+|+||++||..|++.|. +|||+||+.... |-+|... .+
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~---~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~ 78 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGR---EVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVD 78 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCc---EEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCcee
Confidence 479999999999999999999998 899999987421 1001000 00
Q ss_pred ------ccCCCCCCCCCCCCccc-ccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCC-cEEEeccEEec
Q 011351 100 ------YLFPLDKKPARLPGFHT-CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSG-KLLKYGSLIVA 169 (488)
Q Consensus 100 ------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g-~~i~yd~lVlA 169 (488)
+.+.....+.+ +.+. .++...+..+.+ +...+.+++++++|+.+...++ ++++++| +...+|.||||
T Consensus 79 ~W~~~~~~~~~~~~~~~--~d~~pyvg~pgmsalak-~LAtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla 155 (331)
T COG3380 79 VWTPAVWTFTGDGSPPR--GDEDPYVGEPGMSALAK-FLATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLA 155 (331)
T ss_pred eccccccccccCCCCCC--CCCCccccCcchHHHHH-HHhccchhhhhhhhhhheecCCeeEEEecCCCcccccceEEEe
Confidence 00000000000 0000 122222222222 3334778888999999887655 6777555 45789999999
Q ss_pred cC
Q 011351 170 TG 171 (488)
Q Consensus 170 tG 171 (488)
.=
T Consensus 156 ~P 157 (331)
T COG3380 156 IP 157 (331)
T ss_pred cC
Confidence 64
No 168
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.48 E-value=2.5e-06 Score=87.26 Aligned_cols=66 Identities=14% Similarity=0.258 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHH----cC--cEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCc
Q 011351 250 SLAQRYEQLYQQ----NG--VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN 318 (488)
Q Consensus 250 ~~~~~~~~~l~~----~G--V~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~ 318 (488)
.+...+.+.+++ .| +++++++.|+.++..+ +....|.+.+| ++.+|.||+|+|.... .+++.+|+.
T Consensus 212 ~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~G-~i~A~~VVvaAG~~S~-~La~~~Gi~ 283 (497)
T PTZ00383 212 KLSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNRG-EIRARFVVVSACGYSL-LFAQKMGYG 283 (497)
T ss_pred HHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECCC-EEEeCEEEECcChhHH-HHHHHhCCC
Confidence 566777777777 67 8899999999998643 33446777777 5999999999997754 566666653
No 169
>PRK08244 hypothetical protein; Provisional
Probab=98.48 E-value=5.6e-07 Score=93.13 Aligned_cols=120 Identities=18% Similarity=0.347 Sum_probs=70.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-CCC--------------CCCCccc-----------cCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-YER--------------PALTKGY-----------LFPL 104 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~-~~~--------------~~l~~~~-----------~~~~ 104 (488)
+++|+||||||+|+++|..|++.|+ +|+|||+.+... ..+ -.+...+ +...
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~---~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~ 78 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGV---KTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGL 78 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecc
Confidence 4799999999999999999999988 899999986431 111 0000000 0000
Q ss_pred CCCCCCCCCccc-------ccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcE--EEeC--CC-cEEEeccEEeccCC
Q 011351 105 DKKPARLPGFHT-------CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQT--LITN--SG-KLLKYGSLIVATGC 172 (488)
Q Consensus 105 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~--v~~~--~g-~~i~yd~lVlAtG~ 172 (488)
. ....+..... .........+.+.+++.+++++.+++++++..+... +++. +| +++.+|+||.|.|.
T Consensus 79 ~-~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~ 157 (493)
T PRK08244 79 D-TRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGA 157 (493)
T ss_pred c-ccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCC
Confidence 0 0000000000 000000011122345568999999999998765543 3443 45 47999999999998
Q ss_pred CC
Q 011351 173 TA 174 (488)
Q Consensus 173 ~~ 174 (488)
..
T Consensus 158 ~S 159 (493)
T PRK08244 158 GS 159 (493)
T ss_pred Ch
Confidence 65
No 170
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.47 E-value=1.9e-06 Score=88.28 Aligned_cols=57 Identities=23% Similarity=0.311 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc-----EEEcCEEEEeecC
Q 011351 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGA 305 (488)
Q Consensus 249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~-----~i~~D~vi~a~G~ 305 (488)
..+.+.+.+.+++.|.+|++++.|++|...++++++++.+.+|+ ++.+|.||+++..
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 45667778888889999999999999986556767778887665 7999999999864
No 171
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.46 E-value=5e-06 Score=83.14 Aligned_cols=65 Identities=20% Similarity=0.361 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCC
Q 011351 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 317 (488)
Q Consensus 249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl 317 (488)
..+...+.+.+++.|++++.+++|++++.+ ++.+ .|.+.++ ++.+|.||+|+|.... .+++.+++
T Consensus 145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~~-~i~a~~vV~aaG~~~~-~l~~~~g~ 209 (380)
T TIGR01377 145 EKALRALQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTKG-SYQANKLVVTAGAWTS-KLLSPLGI 209 (380)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCCC-EEEeCEEEEecCcchH-HHhhhccc
Confidence 356667777788899999999999999864 3433 4666666 6999999999997543 45554443
No 172
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.46 E-value=1.5e-05 Score=74.33 Aligned_cols=139 Identities=19% Similarity=0.237 Sum_probs=92.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc----------cc---------------------------cCH
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------RL---------------------------FTP 249 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~----------~~---------------------------~~~ 249 (488)
.-.++|||+|+.|+-+|..|++.|.+|.++++.+.+-. .. ...
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 34699999999999999999999999999998754310 00 012
Q ss_pred HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCC-cEEEEEeCC-----------CcEEEcCEEEEeecCccCC-hhh-hhc
Q 011351 250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLED-----------GSTIDADTIVIGIGAKPTV-SPF-ERV 315 (488)
Q Consensus 250 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~-~v~~v~l~~-----------g~~i~~D~vi~a~G~~p~~-~~~-~~~ 315 (488)
++.+.+.+...+.|++++.++.+.++...++. ++.++.+.. ..++.++.||.|||..... .++ +..
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~ 180 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKKI 180 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHHc
Confidence 34455666677889999999999998865442 577776642 2478999999999976532 232 333
Q ss_pred CCcccC------CCEEeCC--C---CCC--CCCCEEEEceecc
Q 011351 316 GLNSSV------GGIQVDG--Q---FRT--RMPGIFAIGDVAA 345 (488)
Q Consensus 316 gl~~~~------g~i~vd~--~---~~t--~~~~Ifa~GD~a~ 345 (488)
++.... +....+. . -.| -+|++|++|=.+.
T Consensus 181 ~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~ 223 (254)
T TIGR00292 181 VLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVA 223 (254)
T ss_pred CcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhh
Confidence 322110 1111110 0 013 4899999997775
No 173
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.45 E-value=9.1e-06 Score=76.07 Aligned_cols=101 Identities=23% Similarity=0.252 Sum_probs=75.8
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc-------------------------------------ccCHH
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------LFTPS 250 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~-------------------------------------~~~~~ 250 (488)
..|+|||+|+.|+-+|..|++.|.+|.++++.+.+-.. .....
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~~ 105 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSVE 105 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHHH
Confidence 57999999999999999999999999999987543210 00123
Q ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-----------CCcEEEcCEEEEeecCccC
Q 011351 251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~-----------~g~~i~~D~vi~a~G~~p~ 308 (488)
+...+.+..++.|++++.++.+..+...+++++.++... +..++.++.||.|+|....
T Consensus 106 l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~ 174 (257)
T PRK04176 106 AAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE 174 (257)
T ss_pred HHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence 445566667788999999999999876545466666543 2247999999999997653
No 174
>PRK07045 putative monooxygenase; Reviewed
Probab=98.43 E-value=5e-07 Score=90.62 Aligned_cols=122 Identities=16% Similarity=0.220 Sum_probs=72.2
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-CC-CCCc---ccc----------------------
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-RP-ALTK---GYL---------------------- 101 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~-~~-~l~~---~~~---------------------- 101 (488)
+.+++|+||||||||+++|..|++.|+ +|+|+|+.+..... +. .+.. ..+
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~ 79 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGH---SVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRL 79 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCC---cEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEE
Confidence 456899999999999999999999998 89999998754210 00 0000 000
Q ss_pred CCCCCCCCCCCCcccccCCCCCC-----CCHhHH----H-HCCCeEEeCCcEEEEeCCC-c---EEEeCCCcEEEeccEE
Q 011351 102 FPLDKKPARLPGFHTCVGSGGER-----QTPEWY----K-EKGIEMIYQDPVTSIDIEK-Q---TLITNSGKLLKYGSLI 167 (488)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~----~-~~~i~~~~~~~v~~id~~~-~---~v~~~~g~~i~yd~lV 167 (488)
.........+. +.......+.. .+.+.+ . ..+++++++++|+++..+. . .|++++|+++.+|.||
T Consensus 80 ~~~g~~~~~~~-~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vI 158 (388)
T PRK07045 80 YHDKELIASLD-YRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLV 158 (388)
T ss_pred ecCCcEEEEec-CCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEE
Confidence 00000000000 00000000000 011111 1 2478999999999987643 2 4777888899999999
Q ss_pred eccCCCC
Q 011351 168 VATGCTA 174 (488)
Q Consensus 168 lAtG~~~ 174 (488)
-|.|...
T Consensus 159 gADG~~S 165 (388)
T PRK07045 159 GADGARS 165 (388)
T ss_pred ECCCCCh
Confidence 9999865
No 175
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.43 E-value=1.5e-06 Score=86.50 Aligned_cols=109 Identities=19% Similarity=0.324 Sum_probs=70.5
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc-------------------------------------------
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------- 245 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~------------------------------------------- 245 (488)
+|+|||+|+.|+-+|..+++.|.+|.++++.+++..+
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d 81 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED 81 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence 5899999999999999999999999999998332111
Q ss_pred -----------------------c-cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 011351 246 -----------------------L-FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 301 (488)
Q Consensus 246 -----------------------~-~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~ 301 (488)
. -..++.+.+.+.+++.||+++++++|.+++.. ++.+..|.+++++++.||.||+
T Consensus 82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~~~~~~~a~~vIL 160 (409)
T PF03486_consen 82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGVKTKNGGEYEADAVIL 160 (409)
T ss_dssp HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEEEETTTEEEEESEEEE
T ss_pred HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEeeccCcccccCCEEEE
Confidence 0 01235567788889999999999999999865 4455578887788999999999
Q ss_pred eecCccCC---------hhhhhcCCc
Q 011351 302 GIGAKPTV---------SPFERVGLN 318 (488)
Q Consensus 302 a~G~~p~~---------~~~~~~gl~ 318 (488)
|+|-.... .+++++|..
T Consensus 161 AtGG~S~p~~GS~G~gy~~a~~lGh~ 186 (409)
T PF03486_consen 161 ATGGKSYPKTGSDGSGYRIAKKLGHT 186 (409)
T ss_dssp ----SSSGGGT-SSHHHHHHHHTT--
T ss_pred ecCCCCccccCCCcHHHHHHHHCCCc
Confidence 99965432 246676654
No 176
>PRK07233 hypothetical protein; Provisional
Probab=98.43 E-value=8.4e-07 Score=90.40 Aligned_cols=56 Identities=18% Similarity=0.294 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 306 (488)
Q Consensus 249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~ 306 (488)
..+.+.+.+.+++.|++++++++|++|+.+ ++.+..+. .+++++.+|.||+|++..
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~-~~~~~~~~-~~~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVID-GGGVTGVE-VDGEEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEc-CCceEEEE-eCCceEECCEEEECCCHH
Confidence 456777888888899999999999999865 34443333 567789999999998753
No 177
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.43 E-value=8.4e-07 Score=88.81 Aligned_cols=122 Identities=14% Similarity=0.258 Sum_probs=71.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--------CCCc---cc-----cCCCC----CCCC-
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP--------ALTK---GY-----LFPLD----KKPA- 109 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~--------~l~~---~~-----~~~~~----~~~~- 109 (488)
.+||+|||||++|+++|..|++.|+ +|+|||+.+...+... .++. .. +...- ..+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~---~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~ 79 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGR---SVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYK 79 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCC---cEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccc
Confidence 4799999999999999999999988 8999998752221110 0100 00 00000 0000
Q ss_pred ------CCCC---cc--cccCCC--CC--CC-CH----hHHHH-CCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccE
Q 011351 110 ------RLPG---FH--TCVGSG--GE--RQ-TP----EWYKE-KGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSL 166 (488)
Q Consensus 110 ------~~~~---~~--~~~~~~--~~--~~-~~----~~~~~-~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~l 166 (488)
.... +. ...... +. +. +. +.+.. .+++++.+++|++++.+. .++++++|.++.+|.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lv 159 (384)
T PRK08849 80 RLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWV 159 (384)
T ss_pred eEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEE
Confidence 0000 00 000000 00 00 00 11122 368999999999987644 3678889999999999
Q ss_pred EeccCCCCC
Q 011351 167 IVATGCTAS 175 (488)
Q Consensus 167 VlAtG~~~~ 175 (488)
|.|+|....
T Consensus 160 IgADG~~S~ 168 (384)
T PRK08849 160 IGADGANSQ 168 (384)
T ss_pred EEecCCCch
Confidence 999998654
No 178
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.42 E-value=9.5e-07 Score=89.73 Aligned_cols=98 Identities=21% Similarity=0.314 Sum_probs=74.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
.++|+|||||++|+.+|..|++.|. +|+++++.+.... +.+. ..+ .....+.+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~~~--~~~~-----------~~~-----------~~~~~~~l 189 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGK---NVTLIHRSERILN--KLFD-----------EEM-----------NQIVEEEL 189 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC---cEEEEECCcccCc--cccC-----------HHH-----------HHHHHHHH
Confidence 4799999999999999999999876 7999998754200 0000 000 11235667
Q ss_pred HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCC
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
++.|++++.++.+.+++.+...+.+.+|+++.+|.|++|+|..+.
T Consensus 190 ~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 190 KKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPN 234 (427)
T ss_pred HHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCC
Confidence 888999999999999988766556678888999999999998765
No 179
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.42 E-value=7.5e-06 Score=79.53 Aligned_cols=93 Identities=18% Similarity=0.267 Sum_probs=68.3
Q ss_pred HHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC
Q 011351 226 AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 305 (488)
Q Consensus 226 l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~ 305 (488)
....+....++....+.+.....+.+.+-+.+.+++.|++++++++|..++.. ++.+..+.+++|+++++|.||+|+|.
T Consensus 150 ~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 150 FRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIE-DNEVLGVKLTKGEEIEADYVVLAPGR 228 (486)
T ss_pred HHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEec-CCceEEEEccCCcEEecCEEEEccCc
Confidence 34445555444433333333345678888999999999999999999999864 45567899999999999999999999
Q ss_pred ccCChhh----hhcCCccc
Q 011351 306 KPTVSPF----ERVGLNSS 320 (488)
Q Consensus 306 ~p~~~~~----~~~gl~~~ 320 (488)
... +|+ +..|+...
T Consensus 229 sg~-dw~~~l~~K~Gv~~~ 246 (486)
T COG2509 229 SGR-DWFEMLHKKLGVKMR 246 (486)
T ss_pred chH-HHHHHHHHhcCcccc
Confidence 876 443 44455543
No 180
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.42 E-value=5.8e-06 Score=83.47 Aligned_cols=57 Identities=19% Similarity=0.372 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351 250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 307 (488)
Q Consensus 250 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p 307 (488)
.+...+.+.+++.|++++.+++|++++..+++.+..|.+.+| ++.+|.||+|+|...
T Consensus 184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS 240 (407)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence 455556677889999999999999997544456666777777 599999988877644
No 181
>PLN02697 lycopene epsilon cyclase
Probab=98.41 E-value=7.3e-07 Score=91.60 Aligned_cols=119 Identities=13% Similarity=0.191 Sum_probs=68.3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC-CCccccC--CCCC-CCCCCC--------Ccccc
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA-LTKGYLF--PLDK-KPARLP--------GFHTC 117 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~-l~~~~~~--~~~~-~~~~~~--------~~~~~ 117 (488)
..+||+|||||+||+++|..|++.|+ +|+|||+... +.... .+...+. .... ....++ +....
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl---~V~LIe~~~p--~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~ 181 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGL---NVGLIGPDLP--FTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIM 181 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCC---cEEEecCccc--CCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceee
Confidence 35899999999999999999999987 8999998532 21110 0000000 0000 000000 00000
Q ss_pred cCCCCC--------CCCHhHHHHCCCeEEeCCcEEEEeCCCc--E-EEeCCCcEEEeccEEeccCCCC
Q 011351 118 VGSGGE--------RQTPEWYKEKGIEMIYQDPVTSIDIEKQ--T-LITNSGKLLKYGSLIVATGCTA 174 (488)
Q Consensus 118 ~~~~~~--------~~~~~~~~~~~i~~~~~~~v~~id~~~~--~-v~~~~g~~i~yd~lVlAtG~~~ 174 (488)
.+..+. ..+.+.+.+.+++++ +++|+++..+.. . +++.+|.++.++.||.|+|...
T Consensus 182 ~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~-~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 182 IGRAYGRVSRTLLHEELLRRCVESGVSYL-SSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred ccCcccEEcHHHHHHHHHHHHHhcCCEEE-eeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 001110 011222345689884 578998875433 2 4557788899999999999876
No 182
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.41 E-value=1e-06 Score=92.13 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=33.7
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
+.+++|+|||||++|+++|..|++.|+ +|+|||+.+.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~---~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGV---RVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCC
Confidence 456899999999999999999999988 8999999864
No 183
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.41 E-value=1.2e-06 Score=87.76 Aligned_cols=37 Identities=24% Similarity=0.442 Sum_probs=33.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 89 (488)
++++|+|||||+||+++|..|++.|+ +|+|+|+.+..
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~---~v~v~E~~~~~ 40 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGL---RVALLAPRAPP 40 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCC---eEEEEecCCCc
Confidence 46799999999999999999999987 89999998763
No 184
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.41 E-value=1e-05 Score=83.14 Aligned_cols=64 Identities=22% Similarity=0.338 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC--CC--cEEEcCEEEEeecC-ccCChhhh
Q 011351 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIVIGIGA-KPTVSPFE 313 (488)
Q Consensus 249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~--~g--~~i~~D~vi~a~G~-~p~~~~~~ 313 (488)
..+...+.+.+++.|++++++++++++..+ ++++.++... ++ ..+.++.||+|+|- ..+.++++
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~~ 199 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALELD-DGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNREWLR 199 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCeEEEEEEEccCCceEEEECCEEEECCCCCCCCHHHHH
Confidence 456677778888999999999999999864 5777777653 33 35899999999984 33333333
No 185
>PLN02612 phytoene desaturase
Probab=98.41 E-value=6.4e-06 Score=86.26 Aligned_cols=57 Identities=25% Similarity=0.327 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC
Q 011351 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 305 (488)
Q Consensus 249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~ 305 (488)
..+.+.+.+.+++.|.+|++++.|++|+.++++.+..+.+.+|+++.+|.||++++.
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 456677888888899999999999999876667676788889999999999999763
No 186
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.40 E-value=3e-06 Score=76.67 Aligned_cols=96 Identities=21% Similarity=0.350 Sum_probs=67.2
Q ss_pred EEECCCHHHHHHHHHHHhCCCc-EEEEecCCcCcc--------------c----------------------------cc
Q 011351 211 VVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQ--------------R----------------------------LF 247 (488)
Q Consensus 211 vVvG~G~~g~e~A~~l~~~g~~-v~lv~~~~~~l~--------------~----------------------------~~ 247 (488)
+|||+|+.|+-+|..|.+.|.+ ++++++.+.+.. . ..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999998 999998732211 0 00
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC--ccC
Q 011351 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA--KPT 308 (488)
Q Consensus 248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~--~p~ 308 (488)
.+++.++++...++.++++.++++|++++.++++ ..|.+.+++++.||.||+|+|. .|.
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG~~~~p~ 141 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATGHYSHPR 141 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETTS-EEEEEEEEE---SSCSB-
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEecceeeeeeEEEeeeccCCCC
Confidence 1235577888889999999999999999987555 4688899988999999999997 454
No 187
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.40 E-value=1.1e-06 Score=88.55 Aligned_cols=45 Identities=13% Similarity=0.283 Sum_probs=36.1
Q ss_pred HHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
.+.+++++.++++++++.+.. .|++.+|+++.+|.||.|.|....
T Consensus 123 ~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 123 HDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA 169 (405)
T ss_pred hcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 445899999999999876543 466788888999999999998653
No 188
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.40 E-value=2.5e-06 Score=85.75 Aligned_cols=99 Identities=25% Similarity=0.362 Sum_probs=73.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCcCcc-c-ccCHHHH---------HHHHHHHHHcCcEEEcCCeEE
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQ-R-LFTPSLA---------QRYEQLYQQNGVKFVKGASIK 273 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~--~v~lv~~~~~~l~-~-~~~~~~~---------~~~~~~l~~~GV~v~~~~~v~ 273 (488)
.++++|||+|+.|+.+|..|++.+. +|+++.+.+.+.. + .+...+. ..-.+.+.+.||+++.++.|.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 4689999999999999999999876 6899987654311 1 1111110 011244677899999999999
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351 274 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 309 (488)
Q Consensus 274 ~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~ 309 (488)
.++.. .. .+.+++|+++.+|.+|+|||.+|..
T Consensus 83 ~id~~-~~---~v~~~~g~~~~yd~LViATGs~~~~ 114 (396)
T PRK09754 83 TLGRD-TR---ELVLTNGESWHWDQLFIATGAAARP 114 (396)
T ss_pred EEECC-CC---EEEECCCCEEEcCEEEEccCCCCCC
Confidence 99753 22 4677889899999999999999853
No 189
>PRK05868 hypothetical protein; Validated
Probab=98.40 E-value=1.1e-06 Score=87.47 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=71.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC------C---------CCCCccc-----------cCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE------R---------PALTKGY-----------LFPL 104 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~------~---------~~l~~~~-----------~~~~ 104 (488)
+++|+|||||++|+++|..|++.|+ +|+|+|+.+..... + ..+...+ +...
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~---~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~ 77 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGY---SVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDR 77 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC---CEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeC
Confidence 4689999999999999999999988 89999998653210 0 0000000 0000
Q ss_pred CCCC-CCCCCcccccCCC-----CCC---CCHhHHH---HCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEecc
Q 011351 105 DKKP-ARLPGFHTCVGSG-----GER---QTPEWYK---EKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVAT 170 (488)
Q Consensus 105 ~~~~-~~~~~~~~~~~~~-----~~~---~~~~~~~---~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAt 170 (488)
.... ..... ....+.. ... .+.+.+. ..+++++++++|++++.+.. ++++++|+++.+|.||-|.
T Consensus 78 ~g~~~~~~~~-~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgAD 156 (372)
T PRK05868 78 DGNELFRDTE-STPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGAD 156 (372)
T ss_pred CCCEEeeccc-ccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECC
Confidence 0000 00000 0000000 000 1112212 35789999999999876544 5677889899999999999
Q ss_pred CCCCC
Q 011351 171 GCTAS 175 (488)
Q Consensus 171 G~~~~ 175 (488)
|....
T Consensus 157 G~~S~ 161 (372)
T PRK05868 157 GLHSN 161 (372)
T ss_pred CCCch
Confidence 97653
No 190
>PRK08013 oxidoreductase; Provisional
Probab=98.39 E-value=6.2e-07 Score=90.24 Aligned_cols=123 Identities=16% Similarity=0.196 Sum_probs=72.0
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-------CC-CCCc---------cccCC---CCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-------RP-ALTK---------GYLFP---LDKKPA 109 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~-------~~-~l~~---------~~~~~---~~~~~~ 109 (488)
+++||+||||||+|+++|..|++.|+ +|+|+|+.+...-. |. .++. +.+.. ....+.
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~---~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~ 78 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGL---RVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCY 78 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCC---EEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccc
Confidence 35799999999999999999999988 89999998752110 00 0000 00000 000000
Q ss_pred C-C-------CCcccc----cCCCCC---C---C----CHhHHHH-CCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEec
Q 011351 110 R-L-------PGFHTC----VGSGGE---R---Q----TPEWYKE-KGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYG 164 (488)
Q Consensus 110 ~-~-------~~~~~~----~~~~~~---~---~----~~~~~~~-~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd 164 (488)
+ + .+.... .+.... . . +.+.... .+++++.+++|++++.+. -++++.+|+++.+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~ 158 (400)
T PRK08013 79 HGMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTAR 158 (400)
T ss_pred cEEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEee
Confidence 0 0 000000 000000 0 0 0111233 279999999999986554 35667788899999
Q ss_pred cEEeccCCCCC
Q 011351 165 SLIVATGCTAS 175 (488)
Q Consensus 165 ~lVlAtG~~~~ 175 (488)
.||-|.|....
T Consensus 159 lvVgADG~~S~ 169 (400)
T PRK08013 159 LVVGADGANSW 169 (400)
T ss_pred EEEEeCCCCcH
Confidence 99999997653
No 191
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.39 E-value=6.9e-07 Score=89.87 Aligned_cols=123 Identities=19% Similarity=0.234 Sum_probs=71.3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--CCC-------------ccc-----------cCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP--ALT-------------KGY-----------LFP 103 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~--~l~-------------~~~-----------~~~ 103 (488)
++.+|+|||||++|+++|..|++.|+ +|+|+|+.+...-... .+. ... +..
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~---~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~ 79 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGI---KVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMD 79 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCC---cEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEe
Confidence 45799999999999999999999988 8999999874321000 000 000 000
Q ss_pred --CCCCCCCCC--C-cccccCCCCC--C------CCHhHHHHC-CCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEE
Q 011351 104 --LDKKPARLP--G-FHTCVGSGGE--R------QTPEWYKEK-GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLI 167 (488)
Q Consensus 104 --~~~~~~~~~--~-~~~~~~~~~~--~------~~~~~~~~~-~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lV 167 (488)
.......++ . +....+.... . .+.+.+.+. +++++.++++++++.+.. .+++.+|+++.+|.||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV 159 (396)
T PRK08163 80 AVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALI 159 (396)
T ss_pred CCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEE
Confidence 000000000 0 0000000000 0 011112233 488999999999986544 4666788889999999
Q ss_pred eccCCCCC
Q 011351 168 VATGCTAS 175 (488)
Q Consensus 168 lAtG~~~~ 175 (488)
.|.|....
T Consensus 160 ~AdG~~S~ 167 (396)
T PRK08163 160 GCDGVKSV 167 (396)
T ss_pred ECCCcChH
Confidence 99998654
No 192
>PRK06126 hypothetical protein; Provisional
Probab=98.38 E-value=1.7e-06 Score=90.85 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=34.2
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
.+..++|+|||||++|+++|..|+++|+ +|+|+|+.+.
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~---~v~viEr~~~ 41 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGRRGV---DSILVERKDG 41 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCC
Confidence 4456899999999999999999999998 8999999864
No 193
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.38 E-value=8.7e-07 Score=89.73 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=34.0
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 89 (488)
..++||+|||||+||+++|..|++.|+ +|+|+|+.+..
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~ 53 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGL---RIALIEAQPAE 53 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCC---EEEEEecCCcc
Confidence 346899999999999999999999988 89999998753
No 194
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.38 E-value=8.8e-07 Score=88.67 Aligned_cols=121 Identities=15% Similarity=0.127 Sum_probs=71.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCC--------------CCC------------CccccC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA--PYER--------------PAL------------TKGYLF 102 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~--~~~~--------------~~l------------~~~~~~ 102 (488)
+++|+|||||++|+++|..|++.|+ +|+|||+.+.. ...+ -.+ ......
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~---~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~ 78 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGL---DVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVD 78 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCC---cEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEe
Confidence 5799999999999999999999998 89999998211 0000 000 000000
Q ss_pred CCCC--CCCCCCCcc-----c-ccCCCCCCCCHhHHHHC-CCeEEeCCcEEEEeCCCc--EEEeC-CCcEEEeccEEecc
Q 011351 103 PLDK--KPARLPGFH-----T-CVGSGGERQTPEWYKEK-GIEMIYQDPVTSIDIEKQ--TLITN-SGKLLKYGSLIVAT 170 (488)
Q Consensus 103 ~~~~--~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~-~i~~~~~~~v~~id~~~~--~v~~~-~g~~i~yd~lVlAt 170 (488)
.... ...+..... . ..-......+.+...+. +++++.+++|+.++.+.. ++++. +|+++.+|.||-|-
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgAD 158 (387)
T COG0654 79 DGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGAD 158 (387)
T ss_pred cCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECC
Confidence 0000 000000000 0 00000000111223333 489999999999987653 57777 99999999999999
Q ss_pred CCCC
Q 011351 171 GCTA 174 (488)
Q Consensus 171 G~~~ 174 (488)
|...
T Consensus 159 G~~S 162 (387)
T COG0654 159 GANS 162 (387)
T ss_pred CCch
Confidence 9754
No 195
>PRK06185 hypothetical protein; Provisional
Probab=98.37 E-value=1.7e-06 Score=87.41 Aligned_cols=38 Identities=26% Similarity=0.388 Sum_probs=34.0
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
..+++||+|||||++|+++|..|++.|+ +|+|||+.+.
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~---~v~liE~~~~ 40 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARAGV---DVTVLEKHAD 40 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCc
Confidence 4457899999999999999999999987 8999999764
No 196
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.37 E-value=1.2e-06 Score=88.44 Aligned_cols=42 Identities=17% Similarity=0.266 Sum_probs=34.7
Q ss_pred CCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCCCCC
Q 011351 134 GIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 134 ~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
+++++.+++|++++.++ ..+++++|+++.+|.||.|.|....
T Consensus 126 ~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~ 169 (405)
T PRK08850 126 NVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSW 169 (405)
T ss_pred CeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCCh
Confidence 68999999999986544 3577788989999999999997653
No 197
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.36 E-value=6.3e-07 Score=92.12 Aligned_cols=57 Identities=23% Similarity=0.411 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC
Q 011351 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 305 (488)
Q Consensus 248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~ 305 (488)
...+.+.+.+.+++.|++|+++++|++|..+ +++.+.+...+|+.+++|.||.....
T Consensus 223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~-~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 223 MGALVDALAELAREHGGEIRTGAEVSQILVE-GGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCceEEEEEe-CCcceEEeccccceeccceeEecCch
Confidence 3467888999999999999999999999864 55556788888878999999998776
No 198
>PRK07588 hypothetical protein; Provisional
Probab=98.36 E-value=2.3e-06 Score=85.86 Aligned_cols=121 Identities=18% Similarity=0.230 Sum_probs=70.1
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-C-CCC-Ccc--------c----c-----------C-CC
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-R-PAL-TKG--------Y----L-----------F-PL 104 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~-~-~~l-~~~--------~----~-----------~-~~ 104 (488)
.+|+|||||++|+++|..|++.|+ +|+|+|+.+...-. + ..+ ..+ . . . ..
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 77 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGH---EPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPT 77 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCC---ceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCC
Confidence 479999999999999999999988 89999998643100 0 000 000 0 0 0 00
Q ss_pred CCCCCCCC--CcccccCCCCCCC----CHhHH---HHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCC
Q 011351 105 DKKPARLP--GFHTCVGSGGERQ----TPEWY---KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCT 173 (488)
Q Consensus 105 ~~~~~~~~--~~~~~~~~~~~~~----~~~~~---~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~ 173 (488)
......+. .+....+..+... +.+.+ ...+++++.+++|++++.+.. ++++++|+.+.+|.||-|.|..
T Consensus 78 g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~ 157 (391)
T PRK07588 78 GRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLH 157 (391)
T ss_pred CCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 00000000 0000000000000 01111 123689999999999987654 4667889889999999999976
Q ss_pred CC
Q 011351 174 AS 175 (488)
Q Consensus 174 ~~ 175 (488)
..
T Consensus 158 S~ 159 (391)
T PRK07588 158 SH 159 (391)
T ss_pred cc
Confidence 54
No 199
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.35 E-value=9.6e-07 Score=87.84 Aligned_cols=119 Identities=16% Similarity=0.171 Sum_probs=68.0
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCC-----CCCCCCCc-------ccccCC
Q 011351 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK-----KPARLPGF-------HTCVGS 120 (488)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~-------~~~~~~ 120 (488)
||+|||||+||+++|.+|++... +.+|+|||+++..++...... .++..... ....+.+. ......
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~-g~~Vllid~~~~~~~~~~~tW-~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~ 78 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARP-GLSVLLIDPKPKPPWPNDRTW-CFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILID 78 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCccccccCCccc-ccccccccchHHHHheecCceEEEeCCCceEEcc
Confidence 79999999999999999954433 459999999876533211110 01100000 00000000 000000
Q ss_pred -CC-CCC---CH----hHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCC
Q 011351 121 -GG-ERQ---TP----EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA 174 (488)
Q Consensus 121 -~~-~~~---~~----~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~ 174 (488)
.+ ... +. +.+...++ .+.++.|.+|+.... .+++.+|+++.++.||-|+|...
T Consensus 79 ~~Y~~i~~~~f~~~l~~~~~~~~~-~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 79 YPYCMIDRADFYEFLLERAAAGGV-IRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred cceEEEEHHHHHHHHHHHhhhCCe-EEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccc
Confidence 00 000 11 11222244 455689999988765 67888999999999999999554
No 200
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.35 E-value=4.7e-06 Score=86.24 Aligned_cols=65 Identities=18% Similarity=0.302 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe--CCC--cEEEcCEEEEeec-CccCChhhhh
Q 011351 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDG--STIDADTIVIGIG-AKPTVSPFER 314 (488)
Q Consensus 249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l--~~g--~~i~~D~vi~a~G-~~p~~~~~~~ 314 (488)
..+...+.+.+++.|+++++++.++++..+ ++++.++.. .++ .++.+|.||+|+| +..|.+++++
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~-~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~~~ 259 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITEK-DGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMIAK 259 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEec-CCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHHHH
Confidence 345666777788999999999999999854 577766655 343 3589999999997 6666555544
No 201
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.34 E-value=1.5e-06 Score=88.96 Aligned_cols=97 Identities=16% Similarity=0.241 Sum_probs=71.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
.++++|||||++|+.+|..|++.|. +|+|+++.+... .... ..+ .....+.+
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~---~Vtli~~~~~ll-----------~~~d---~e~-----------~~~l~~~L 221 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGT---KVTIVEMAPQLL-----------PGED---EDI-----------AHILREKL 221 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCcC-----------cccc---HHH-----------HHHHHHHH
Confidence 4689999999999999999999876 899999875421 0000 000 12245667
Q ss_pred HHCCCeEEeCCcEEEEeCCCcEEEeC-CC--cEEEeccEEeccCCCCC
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQTLITN-SG--KLLKYGSLIVATGCTAS 175 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~~v~~~-~g--~~i~yd~lVlAtG~~~~ 175 (488)
++.+++++.+++|++++.+...+.+. ++ .++.||.|++|+|..|.
T Consensus 222 ~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 222 ENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred HHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccC
Confidence 78899999999999998766554442 34 36899999999998875
No 202
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.34 E-value=1.9e-06 Score=85.99 Aligned_cols=99 Identities=16% Similarity=0.339 Sum_probs=75.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++|+|||||+.|+.+|..|++.+. +|+++++.+...- ..+ +... .....+.
T Consensus 140 ~~~~vvViGgG~~g~e~A~~L~~~g~---~Vtlv~~~~~~l~-------~~~------~~~~-----------~~~l~~~ 192 (377)
T PRK04965 140 DAQRVLVVGGGLIGTELAMDLCRAGK---AVTLVDNAASLLA-------SLM------PPEV-----------SSRLQHR 192 (377)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCC---eEEEEecCCcccc-------hhC------CHHH-----------HHHHHHH
Confidence 35789999999999999999999876 8999998764210 000 0000 0124566
Q ss_pred HHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
+++.+++++.++.+.+++.+.. .+.+.+|+++.+|.+|+|+|..|.
T Consensus 193 l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~ 240 (377)
T PRK04965 193 LTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPN 240 (377)
T ss_pred HHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcc
Confidence 7888999999999999987643 467788989999999999998775
No 203
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.33 E-value=2.7e-05 Score=78.57 Aligned_cols=61 Identities=18% Similarity=0.318 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
..++.+.+.+.++..|.++++++.|++|..++++++.+|.+.+|+++.|+.||......|.
T Consensus 231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 3467788888889999999999999999876567777899999999999999998888776
No 204
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.32 E-value=9.2e-07 Score=88.93 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=34.5
Q ss_pred CCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351 133 KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 133 ~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
.+++++.+++|+++..++. .++++++..+.+|.||.|.|....
T Consensus 126 ~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 126 PGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSA 170 (395)
T ss_pred CCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChh
Confidence 4789998899999875543 566778888999999999997653
No 205
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.32 E-value=8.3e-06 Score=84.67 Aligned_cols=101 Identities=24% Similarity=0.339 Sum_probs=79.6
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC--CcCc-----------ccccCHHHHHHHHHHHHHcCcEEEcCCeE
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHLL-----------QRLFTPSLAQRYEQLYQQNGVKFVKGASI 272 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~--~~~l-----------~~~~~~~~~~~~~~~l~~~GV~v~~~~~v 272 (488)
...+++|||||+.|+.+|..+++.|.+|+++... ..+. +....+++.+.+.+.+++.|++++.+++|
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V 290 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRA 290 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEE
Confidence 3468999999999999999999999999998642 1111 11234567788888889999999999999
Q ss_pred EEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 273 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 273 ~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
+++...++ . ..+.+++|+.+.+|.+|+|+|..|.
T Consensus 291 ~~I~~~~~-~-~~v~~~~g~~i~~d~lIlAtGa~~~ 324 (515)
T TIGR03140 291 KKIETEDG-L-IVVTLESGEVLKAKSVIVATGARWR 324 (515)
T ss_pred EEEEecCC-e-EEEEECCCCEEEeCEEEECCCCCcC
Confidence 99975432 2 3567788888999999999999875
No 206
>PRK06753 hypothetical protein; Provisional
Probab=98.31 E-value=2.8e-06 Score=84.71 Aligned_cols=120 Identities=20% Similarity=0.148 Sum_probs=68.7
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---------------CCCccccC---CCCC-CCCCCC
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---------------ALTKGYLF---PLDK-KPARLP 112 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~---------------~l~~~~~~---~~~~-~~~~~~ 112 (488)
.+|+|||||+||+++|..|++.|+ +|+|+|+.+....... .+...... .... ...+..
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~---~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~ 77 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGH---EVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDK 77 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCC
Confidence 379999999999999999999988 8999999875321100 00000000 0000 000000
Q ss_pred Ccc----cc-cCCCCCC----CCHhHHHH--CCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCC
Q 011351 113 GFH----TC-VGSGGER----QTPEWYKE--KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA 174 (488)
Q Consensus 113 ~~~----~~-~~~~~~~----~~~~~~~~--~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~ 174 (488)
+.. .. .+..... .+.+.+.+ .+.+++.+++|++++.++. ++++++|+++.+|.||-|.|...
T Consensus 78 g~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S 152 (373)
T PRK06753 78 GTLLNKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHS 152 (373)
T ss_pred CCEEeecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcch
Confidence 000 00 0000000 01122221 2456888999999976554 56678888899999999999754
No 207
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.31 E-value=1.1e-06 Score=90.39 Aligned_cols=36 Identities=25% Similarity=0.424 Sum_probs=32.7
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
+.++||+|||||+||+.||..+++.|. +|+|||++.
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~---kV~LiE~~~ 37 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGA---KTLLLTHNL 37 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCC---cEEEEeccc
Confidence 346899999999999999999999987 899999874
No 208
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.31 E-value=2.5e-06 Score=89.49 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=33.7
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
+.+.+|+|||||++|+++|..|++.|+ +|+|||+.+.
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~---~v~viE~~~~ 57 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGV---PVVLLDDDDT 57 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCC---cEEEEeCCCC
Confidence 456899999999999999999999988 8999999874
No 209
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.29 E-value=1.9e-06 Score=88.45 Aligned_cols=97 Identities=20% Similarity=0.333 Sum_probs=72.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
.++++|||||+.|+.+|..|++.|. +|+++++.+... |.. .. .+ .....+.+
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------~~---~~-----------~~~l~~~l 223 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGA---EVTIVEALPRIL---PGE--------DK---EI-----------SKLAERAL 223 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCCcC---CcC--------CH---HH-----------HHHHHHHH
Confidence 4789999999999999999999876 899999876421 000 00 00 12245667
Q ss_pred HHCCCeEEeCCcEEEEeCCCcE--EEeCCC---cEEEeccEEeccCCCCC
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQT--LITNSG---KLLKYGSLIVATGCTAS 175 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~~--v~~~~g---~~i~yd~lVlAtG~~~~ 175 (488)
++.+++++.+++|.+++.+... +.+.++ +++.+|.+|+|+|..|.
T Consensus 224 ~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~ 273 (462)
T PRK06416 224 KKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPN 273 (462)
T ss_pred HHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccC
Confidence 8889999999999999876543 444555 67999999999998875
No 210
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.29 E-value=1.1e-05 Score=83.73 Aligned_cols=100 Identities=26% Similarity=0.389 Sum_probs=80.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC--CcC-----------cccccCHHHHHHHHHHHHHcCcEEEcCCeEE
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHL-----------LQRLFTPSLAQRYEQLYQQNGVKFVKGASIK 273 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~--~~~-----------l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~ 273 (488)
...++|||||+.|+.+|..+++.|.+++++... ..+ .+....+++.+.+.+.+++.|++++.++++.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~ 290 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS 290 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 357999999999999999999999999998653 111 0112345778888899999999999999999
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 274 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 274 ~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
.+...+ + ...+.+.+|+++.+|.||+|+|.+|.
T Consensus 291 ~I~~~~-~-~~~V~~~~g~~i~a~~vViAtG~~~r 323 (517)
T PRK15317 291 KLEPAA-G-LIEVELANGAVLKAKTVILATGARWR 323 (517)
T ss_pred EEEecC-C-eEEEEECCCCEEEcCEEEECCCCCcC
Confidence 998643 2 23567788888999999999999875
No 211
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.28 E-value=3.5e-06 Score=83.51 Aligned_cols=114 Identities=16% Similarity=0.194 Sum_probs=65.0
Q ss_pred eEEEEcCchHHHHHHHHHHHc--CCCCCcEEEEcCCCCCCCCCCCCCccccCCCCC----------CCCCCCCccccc--
Q 011351 53 EFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAYAPYERPALTKGYLFPLDK----------KPARLPGFHTCV-- 118 (488)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~--g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~----------~~~~~~~~~~~~-- 118 (488)
||+|||||+||+++|..|++. |+ +|+++|+.+...-+++- .++..... ...+++...-..
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~---~V~lle~~~~~~~~~tw---~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~ 74 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDF---RIRVIEAGRTIGGNHTW---SFFDSDLSDAQHAWLADLVQTDWPGYEVRFPK 74 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCC---eEEEEeCCCCCCCcccc---eecccccchhhhhhhhhhheEeCCCCEEECcc
Confidence 699999999999999999987 55 89999998743211110 01100000 000000000000
Q ss_pred -----CCCC-CCCCH---hH-HHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCC
Q 011351 119 -----GSGG-ERQTP---EW-YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA 174 (488)
Q Consensus 119 -----~~~~-~~~~~---~~-~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~ 174 (488)
+..+ ..... +. .+..+..++.+++|..++.+ .+++.+|+++.+|.||-|.|..+
T Consensus 75 ~~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~--~v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 75 YRRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDAD--GVDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred hhhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCC--EEEECCCCEEEeeEEEECCCCCC
Confidence 0000 00001 11 12223346667889988654 36678899999999999999764
No 212
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.28 E-value=1.8e-06 Score=75.62 Aligned_cols=38 Identities=21% Similarity=0.339 Sum_probs=34.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 90 (488)
...||+||||||+||+||++|++.|. +|+|+|++.++.
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~---kV~i~E~~ls~G 66 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGL---KVAIFERKLSFG 66 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCc---eEEEEEeecccC
Confidence 35699999999999999999999987 899999987654
No 213
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.27 E-value=2.7e-06 Score=87.53 Aligned_cols=97 Identities=22% Similarity=0.384 Sum_probs=70.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
.++|+|||||++|+.+|..|++.|. +|+|+++.+... |.. . ..+ .....+.+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~---~Vtli~~~~~il---~~~--------~---~~~-----------~~~l~~~l 231 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGV---EVTVVEAADRIL---PTE--------D---AEL-----------SKEVARLL 231 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---eEEEEEecCccC---CcC--------C---HHH-----------HHHHHHHH
Confidence 4799999999999999999999876 899999876420 000 0 000 01234567
Q ss_pred HHCCCeEEeCCcEEEEeC--CCcE--EEeCCC--cEEEeccEEeccCCCCC
Q 011351 131 KEKGIEMIYQDPVTSIDI--EKQT--LITNSG--KLLKYGSLIVATGCTAS 175 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~--~~~~--v~~~~g--~~i~yd~lVlAtG~~~~ 175 (488)
++.|++++.++.|+.++. +++. +.+.+| ++++||.+++|+|..|.
T Consensus 232 ~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~ 282 (472)
T PRK05976 232 KKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPN 282 (472)
T ss_pred HhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccC
Confidence 888999999999999974 3332 233456 36999999999998875
No 214
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.27 E-value=2.9e-06 Score=86.36 Aligned_cols=95 Identities=14% Similarity=0.254 Sum_probs=73.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
..+++|||||+.|+.+|..|++.|. +|+|+++.+... +... . .+ .....+.+
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtli~~~~~l~---~~~d--------~---~~-----------~~~l~~~l 199 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGL---HPTLIHRSDKIN---KLMD--------A---DM-----------NQPILDEL 199 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC---cEEEEecccccc---hhcC--------H---HH-----------HHHHHHHH
Confidence 4689999999999999999999876 899999875421 0000 0 00 12245667
Q ss_pred HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCC
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
++.|++++.++.|.+++. ..+++++|+.+.+|.+++|+|..|.
T Consensus 200 ~~~gI~i~~~~~v~~i~~--~~v~~~~g~~~~~D~vl~a~G~~pn 242 (438)
T PRK13512 200 DKREIPYRLNEEIDAING--NEVTFKSGKVEHYDMIIEGVGTHPN 242 (438)
T ss_pred HhcCCEEEECCeEEEEeC--CEEEECCCCEEEeCEEEECcCCCcC
Confidence 888999999999999874 4677788888999999999998775
No 215
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.27 E-value=6.7e-06 Score=84.05 Aligned_cols=101 Identities=22% Similarity=0.408 Sum_probs=71.9
Q ss_pred CeEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCcCc------cccc----C--HHHHHHHHHHHHHcCcEEEcCCeEE
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLL------QRLF----T--PSLAQRYEQLYQQNGVKFVKGASIK 273 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g--~~v~lv~~~~~~l------~~~~----~--~~~~~~~~~~l~~~GV~v~~~~~v~ 273 (488)
++++|||+|+.|+.+|..|++++ .+|+++++.+.+. +... . .++.....+.+++.||+++.++.++
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 47999999999999999999875 4899999887531 1111 1 1122333466788899999999999
Q ss_pred EEEeCCCCcEEEEEe-CCCcEEE--cCEEEEeecCccCCh
Q 011351 274 NLEAGSDGRVAAVKL-EDGSTID--ADTIVIGIGAKPTVS 310 (488)
Q Consensus 274 ~i~~~~~~~v~~v~l-~~g~~i~--~D~vi~a~G~~p~~~ 310 (488)
+++.+ +..+ .+.. .+|+++. +|.+|+|||.+|...
T Consensus 81 ~id~~-~~~v-~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 118 (444)
T PRK09564 81 KVDAK-NKTI-TVKNLKTGSIFNDTYDKLMIATGARPIIP 118 (444)
T ss_pred EEECC-CCEE-EEEECCCCCEEEecCCEEEECCCCCCCCC
Confidence 99854 3322 2322 2356666 999999999998754
No 216
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.26 E-value=1.6e-06 Score=86.78 Aligned_cols=119 Identities=18% Similarity=0.239 Sum_probs=69.7
Q ss_pred eEEEEcCchHHHHHHHHHHHcC-CCCCcEEEEcCCCCCCCC-----C-CCCCcc---c-----cCCCC-CCCCCCCCc--
Q 011351 53 EFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEAYAPYE-----R-PALTKG---Y-----LFPLD-KKPARLPGF-- 114 (488)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g-~~~~~V~lie~~~~~~~~-----~-~~l~~~---~-----~~~~~-~~~~~~~~~-- 114 (488)
||+|||||+||+++|..|+++| + +|+|+|+.+..... + ..+... . +...- .........
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~---~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~ 77 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKI---KIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHV 77 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCc---eEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEE
Confidence 6999999999999999999999 8 89999998653221 0 000000 0 00000 000000000
Q ss_pred --------ccccCCC-------CCC---CCH----hHHHH-CCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEec
Q 011351 115 --------HTCVGSG-------GER---QTP----EWYKE-KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVA 169 (488)
Q Consensus 115 --------~~~~~~~-------~~~---~~~----~~~~~-~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlA 169 (488)
......+ +.. .+. +.+.. .+++++.+++|+++..+.. ++++++|+++.+|.||.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~A 157 (382)
T TIGR01984 78 SDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAA 157 (382)
T ss_pred EcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEe
Confidence 0000000 000 011 22233 3899998999999875543 566778888999999999
Q ss_pred cCCCC
Q 011351 170 TGCTA 174 (488)
Q Consensus 170 tG~~~ 174 (488)
.|...
T Consensus 158 dG~~S 162 (382)
T TIGR01984 158 DGANS 162 (382)
T ss_pred cCCCh
Confidence 99764
No 217
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.26 E-value=3.3e-06 Score=84.56 Aligned_cols=120 Identities=18% Similarity=0.278 Sum_probs=70.3
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC------C-CCCCc---cc-----cCCC-CC-CCCCCCCcc
Q 011351 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE------R-PALTK---GY-----LFPL-DK-KPARLPGFH 115 (488)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~------~-~~l~~---~~-----~~~~-~~-~~~~~~~~~ 115 (488)
||+|||||+||+++|..|++.|+ +|+|+|+.+..... + ..++. .. +... .. ......+..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~---~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 77 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGL---KIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIH 77 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCC---EEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEE
Confidence 69999999999999999999987 89999999753111 0 00000 00 0000 00 000000000
Q ss_pred ----------ccc-----CCC---------CCCCCHhHHHHCC-CeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEe
Q 011351 116 ----------TCV-----GSG---------GERQTPEWYKEKG-IEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIV 168 (488)
Q Consensus 116 ----------~~~-----~~~---------~~~~~~~~~~~~~-i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVl 168 (488)
... ... ....+.+.+.+.+ ++++.+++|++++.... .+++++|+.+.+|.+|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~ 157 (385)
T TIGR01988 78 VSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVG 157 (385)
T ss_pred EEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEE
Confidence 000 000 0000112233445 89999999999976554 45667888899999999
Q ss_pred ccCCCCC
Q 011351 169 ATGCTAS 175 (488)
Q Consensus 169 AtG~~~~ 175 (488)
|.|....
T Consensus 158 adG~~S~ 164 (385)
T TIGR01988 158 ADGANSK 164 (385)
T ss_pred eCCCCCH
Confidence 9997643
No 218
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.26 E-value=1.4e-05 Score=81.82 Aligned_cols=54 Identities=26% Similarity=0.420 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 306 (488)
Q Consensus 249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~ 306 (488)
..+...+.+.+++.|++++.++.|++++.+ +. ..|.+.+| ++.+|.||+|+|..
T Consensus 183 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~--~~-~~v~t~~g-~v~A~~VV~Atga~ 236 (460)
T TIGR03329 183 GLLVRGLRRVALELGVEIHENTPMTGLEEG--QP-AVVRTPDG-QVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEeeC--Cc-eEEEeCCc-EEECCEEEEccccc
Confidence 456677778888999999999999999742 22 35677777 59999999999964
No 219
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.26 E-value=3.6e-06 Score=84.05 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=32.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
+++||+|||||++|+++|++|++.|. +|+|||++.
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~---~V~lie~~~ 36 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGL---RVLGLDRFM 36 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCC---eEEEEeccc
Confidence 45899999999999999999999987 899999875
No 220
>PRK11445 putative oxidoreductase; Provisional
Probab=98.26 E-value=4.5e-06 Score=82.42 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=30.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
++||+||||||||+++|..|++. + +|+|+|+.+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~---~V~liE~~~~ 34 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-M---KVIAIDKKHQ 34 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-C---CEEEEECCCc
Confidence 47999999999999999999997 6 8999998864
No 221
>PRK06847 hypothetical protein; Provisional
Probab=98.25 E-value=1.6e-05 Score=79.27 Aligned_cols=101 Identities=25% Similarity=0.333 Sum_probs=78.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc------------------------------------------
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------ 244 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~------------------------------------------ 244 (488)
.++|+|||+|+.|+-+|..|.+.|.+|+++++.+.+..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 56899999999999999999999999999987632100
Q ss_pred ---cc----------------cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC
Q 011351 245 ---RL----------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 305 (488)
Q Consensus 245 ---~~----------------~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~ 305 (488)
.. ..+.+.+.+.+.+++.|+++++++++++++..+ +. ..+.+.+|+++.+|.||.|.|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~-~~v~~~~g~~~~ad~vI~AdG~ 161 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDD-DG-VTVTFSDGTTGRYDLVVGADGL 161 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcC-CE-EEEEEcCCCEEEcCEEEECcCC
Confidence 00 002345566677777899999999999998643 33 3577889999999999999998
Q ss_pred ccCC
Q 011351 306 KPTV 309 (488)
Q Consensus 306 ~p~~ 309 (488)
.+..
T Consensus 162 ~s~~ 165 (375)
T PRK06847 162 YSKV 165 (375)
T ss_pred Ccch
Confidence 7754
No 222
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.25 E-value=6.2e-05 Score=76.68 Aligned_cols=103 Identities=16% Similarity=0.194 Sum_probs=75.2
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc---------------------------------------
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL--------------------------------------- 246 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~--------------------------------------- 246 (488)
..++|+|||+|++|+-+|..|.+.|.+++++++++.+-..+
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 35889999999999999999999999999998764221000
Q ss_pred --------------------cCHHHHHHHHHHHHHcCcE--EEcCCeEEEEEeCCCCcEEEEEeCC--Cc--EEEcCEEE
Q 011351 247 --------------------FTPSLAQRYEQLYQQNGVK--FVKGASIKNLEAGSDGRVAAVKLED--GS--TIDADTIV 300 (488)
Q Consensus 247 --------------------~~~~~~~~~~~~l~~~GV~--v~~~~~v~~i~~~~~~~v~~v~l~~--g~--~i~~D~vi 300 (488)
-..++.+++++..+..|+. +.++++|++++..+ ++. .|.+.+ +. +..+|.||
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~-~~w-~V~~~~~~~~~~~~~~d~VI 166 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD-GKW-RVQSKNSGGFSKDEIFDAVV 166 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC-CeE-EEEEEcCCCceEEEEcCEEE
Confidence 0034667788888888988 89999999998643 332 344433 22 46799999
Q ss_pred Eeec--CccCCh
Q 011351 301 IGIG--AKPTVS 310 (488)
Q Consensus 301 ~a~G--~~p~~~ 310 (488)
+|+| ..|+..
T Consensus 167 vAtG~~~~P~~P 178 (461)
T PLN02172 167 VCNGHYTEPNVA 178 (461)
T ss_pred EeccCCCCCcCC
Confidence 9999 456543
No 223
>PRK14694 putative mercuric reductase; Provisional
Probab=98.25 E-value=4.2e-06 Score=86.00 Aligned_cols=96 Identities=23% Similarity=0.363 Sum_probs=70.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
.++++|||+|+.|+..|..|++.|. +|+++++...++. . .. .+ .....+.+
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~---~Vtlv~~~~~l~~----~--------~~---~~-----------~~~l~~~l 228 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGS---RVTVLARSRVLSQ----E--------DP---AV-----------GEAIEAAF 228 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEECCCCCCC----C--------CH---HH-----------HHHHHHHH
Confidence 4799999999999999999999886 8999986422110 0 00 00 12345667
Q ss_pred HHCCCeEEeCCcEEEEeCCCcE--EEeCCCcEEEeccEEeccCCCCCc
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTASR 176 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~~--v~~~~g~~i~yd~lVlAtG~~~~~ 176 (488)
++.|++++.++.+..++.++.. +.+.+ .++.+|.|++|+|..|..
T Consensus 229 ~~~GI~v~~~~~v~~i~~~~~~~~v~~~~-~~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 229 RREGIEVLKQTQASEVDYNGREFILETNA-GTLRAEQLLVATGRTPNT 275 (468)
T ss_pred HhCCCEEEeCCEEEEEEEcCCEEEEEECC-CEEEeCEEEEccCCCCCc
Confidence 8889999999999999876553 33334 469999999999988763
No 224
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.25 E-value=3.2e-06 Score=86.30 Aligned_cols=97 Identities=19% Similarity=0.274 Sum_probs=73.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
.++++|||||+.|+.+|..|++.|. +|+++++.+.... .+ . ..+ .....+.+
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~---~Vtli~~~~~~l~---~~--------d---~~~-----------~~~l~~~l 217 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGV---QVTLIYRGELILR---GF--------D---DDM-----------RALLARNM 217 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEeCCCCCc---cc--------C---HHH-----------HHHHHHHH
Confidence 5689999999999999999999876 8999998754210 00 0 000 11234567
Q ss_pred HHCCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCCCCC
Q 011351 131 KEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
++.+++++.++.|.+++... ..+.+.+++++.+|.+|+|+|..|.
T Consensus 218 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn 264 (446)
T TIGR01424 218 EGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPN 264 (446)
T ss_pred HHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcC
Confidence 78899999999999997533 3566677888999999999998765
No 225
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.24 E-value=2.2e-05 Score=80.45 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=32.9
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 90 (488)
++|+|||||+|||+||+.|++.|. ..+|+|+|+++...
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~-~~~V~vlEa~~~~G 38 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGP-DADITLLEASDRLG 38 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCC-CCCEEEEEcCCCCc
Confidence 479999999999999999999873 34899999998754
No 226
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.24 E-value=5.7e-06 Score=84.06 Aligned_cols=39 Identities=21% Similarity=0.463 Sum_probs=34.5
Q ss_pred cCCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
+..+++||+||||||||++||..|++.|+ +|+|+|+...
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~---~VlllEr~~~ 73 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGI---ETFLIERKLD 73 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCC
Confidence 34567899999999999999999999998 8999999753
No 227
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.24 E-value=1.8e-06 Score=86.64 Aligned_cols=46 Identities=30% Similarity=0.379 Sum_probs=35.0
Q ss_pred hHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCC
Q 011351 128 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA 174 (488)
Q Consensus 128 ~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~ 174 (488)
+.+++.+++++.++.|+++..+.. .+++ ++.++.+|+||+|||...
T Consensus 113 ~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 113 NELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence 345667999999999999876543 3444 456799999999999754
No 228
>PRK06116 glutathione reductase; Validated
Probab=98.24 E-value=3.6e-06 Score=86.13 Aligned_cols=98 Identities=19% Similarity=0.212 Sum_probs=74.3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++|+|||||+.|+.+|..|++.|. +|+++++.+... +.. +. .+ .....+.
T Consensus 166 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~--------~~---~~-----------~~~l~~~ 217 (450)
T PRK06116 166 LPKRVAVVGAGYIAVEFAGVLNGLGS---ETHLFVRGDAPL---RGF--------DP---DI-----------RETLVEE 217 (450)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCCc---ccc--------CH---HH-----------HHHHHHH
Confidence 35799999999999999999999876 899999775421 000 00 00 1234566
Q ss_pred HHHCCCeEEeCCcEEEEeCCC---cEEEeCCCcEEEeccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
+++.+++++.++.|.+++.+. ..+.+.+|+++.+|.+|+|+|..|.
T Consensus 218 L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~ 266 (450)
T PRK06116 218 MEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPN 266 (450)
T ss_pred HHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcC
Confidence 788999999999999997642 3566778888999999999998775
No 229
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.23 E-value=4.2e-06 Score=83.17 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=30.5
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
+||+|||||++|+++|++|++.|. +|+|+|++.
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~---~V~vle~~~ 33 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGL---SVTVIERSS 33 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCC
Confidence 489999999999999999999986 899999875
No 230
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.23 E-value=4.2e-06 Score=85.96 Aligned_cols=98 Identities=19% Similarity=0.309 Sum_probs=73.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++++|||||+.|+.+|..|++.|. +|+|+++.+... +. + +. .+ .....+.
T Consensus 174 ~~~~v~IiGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~-----~---d~---~~-----------~~~l~~~ 225 (461)
T PRK05249 174 LPRSLIIYGAGVIGCEYASIFAALGV---KVTLINTRDRLL---SF-----L---DD---EI-----------SDALSYH 225 (461)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCcC---Cc-----C---CH---HH-----------HHHHHHH
Confidence 35799999999999999999999886 899999875421 00 0 00 00 1224556
Q ss_pred HHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
+++.+++++.++.|++++..+. .+++.+|+++.+|.+++|+|..|.
T Consensus 226 l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 273 (461)
T PRK05249 226 LRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGN 273 (461)
T ss_pred HHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCcc
Confidence 7788999999999999875433 455677888999999999998875
No 231
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.23 E-value=2.6e-06 Score=76.87 Aligned_cols=105 Identities=21% Similarity=0.318 Sum_probs=73.1
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc--cccCH-----------HHH--H--HHHHHHHHcCcEEEcCCe
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--RLFTP-----------SLA--Q--RYEQLYQQNGVKFVKGAS 271 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~--~~~~~-----------~~~--~--~~~~~l~~~GV~v~~~~~ 271 (488)
+|+|||+|+.|+.+|..|...+.+++++++.+.... ..+.. ... . .+.+.+...+++++.+++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 589999999999999999999999999977653111 00000 011 1 334445778999999999
Q ss_pred EEEEEeCCCC------cEEEEEeCCCcEEEcCEEEEeecCccCChhhh
Q 011351 272 IKNLEAGSDG------RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 313 (488)
Q Consensus 272 v~~i~~~~~~------~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~ 313 (488)
+.+++..... .+......++.++.+|.+|+|+|..|+...++
T Consensus 81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~ 128 (201)
T PF07992_consen 81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIP 128 (201)
T ss_dssp EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESST
T ss_pred cccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecC
Confidence 9999865331 11223445667899999999999987754333
No 232
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.23 E-value=4.6e-06 Score=83.85 Aligned_cols=99 Identities=19% Similarity=0.339 Sum_probs=75.0
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (488)
..+++++|||||+.|+..|..+++.|. +|||||+.+.. +...+... ......
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~---~VTiie~~~~i-----------Lp~~D~ei--------------~~~~~~ 222 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGS---KVTVVERGDRI-----------LPGEDPEI--------------SKELTK 222 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCC-----------CCcCCHHH--------------HHHHHH
Confidence 456789999999999999999999987 89999988763 11111111 122455
Q ss_pred HHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCc--EEEeccEEeccCCCCC
Q 011351 129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGK--LLKYGSLIVATGCTAS 175 (488)
Q Consensus 129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~--~i~yd~lVlAtG~~~~ 175 (488)
.+++.+++++.++.++.+...+. .+.+++++ .+.+|++++|+|-.|+
T Consensus 223 ~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn 273 (454)
T COG1249 223 QLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPN 273 (454)
T ss_pred HHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccC
Confidence 66777899999999988876553 56677776 6899999999997765
No 233
>PRK07846 mycothione reductase; Reviewed
Probab=98.22 E-value=4.6e-06 Score=85.10 Aligned_cols=96 Identities=26% Similarity=0.367 Sum_probs=70.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
.++++|||||+.|+.+|..|++.|. +|+|+++.+... +.. +. .+ .....+ +
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~---~Vtli~~~~~ll---~~~--------d~---~~-----------~~~l~~-l 216 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGV---RVTVVNRSGRLL---RHL--------DD---DI-----------SERFTE-L 216 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCccc---ccc--------CH---HH-----------HHHHHH-H
Confidence 5799999999999999999999876 899999876421 000 00 00 001122 2
Q ss_pred HHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
.+.++++++++++++++.++. .+.+.+|+++++|.+++|+|..|.
T Consensus 217 ~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn 263 (451)
T PRK07846 217 ASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPN 263 (451)
T ss_pred HhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccC
Confidence 346799999999999986543 456677888999999999998875
No 234
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.22 E-value=6.7e-06 Score=81.70 Aligned_cols=97 Identities=19% Similarity=0.305 Sum_probs=72.3
Q ss_pred eEEEECCCHHHHHHHHHHHhC---CCcEEEEecCCcCccc-cc---------CHHHHHHHHHHHHHcCcEEEcCCeEEEE
Q 011351 209 KVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLLQR-LF---------TPSLAQRYEQLYQQNGVKFVKGASIKNL 275 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~---g~~v~lv~~~~~~l~~-~~---------~~~~~~~~~~~l~~~GV~v~~~~~v~~i 275 (488)
+|+|||||+.|+.+|..+.+. +.+|+++++.+..... .+ ..++...+.+.+++.||+++.+ .++.+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence 489999999999999998643 5789999988653211 11 1123334556677889999886 78899
Q ss_pred EeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh
Q 011351 276 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 310 (488)
Q Consensus 276 ~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~ 310 (488)
+..+ . .|.+++|+++.+|.+|+|||.+|...
T Consensus 80 d~~~-~---~V~~~~g~~~~yD~LviAtG~~~~~~ 110 (364)
T TIGR03169 80 DPDR-R---KVLLANRPPLSYDVLSLDVGSTTPLS 110 (364)
T ss_pred eccc-C---EEEECCCCcccccEEEEccCCCCCCC
Confidence 7542 2 57788998899999999999998743
No 235
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.22 E-value=4.8e-06 Score=83.44 Aligned_cols=32 Identities=22% Similarity=0.526 Sum_probs=30.4
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~ 86 (488)
+||+||||||||+++|+.|++.|+ +|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~---~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGI---ETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC---cEEEEECC
Confidence 589999999999999999999988 89999997
No 236
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.22 E-value=1.2e-05 Score=78.62 Aligned_cols=95 Identities=24% Similarity=0.429 Sum_probs=69.8
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecC-CcCcc-------------------------------------------
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHLLQ------------------------------------------- 244 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~-~~~l~------------------------------------------- 244 (488)
.|+|||||..|+|.|..+++.|.+|.++... +.+..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 4899999999999999999999999998433 11110
Q ss_pred ---------cccC-HHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC
Q 011351 245 ---------RLFT-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 305 (488)
Q Consensus 245 ---------~~~~-~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~ 305 (488)
.+.| ..+...+++.+++ .+++++. .+|+++.. +++++.+|.+.+|+++.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQ-GEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEE-cccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 0112 2345666777777 6899874 57999975 468899999999999999999999998
No 237
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.22 E-value=4.3e-06 Score=88.14 Aligned_cols=36 Identities=25% Similarity=0.400 Sum_probs=32.3
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
....||||||||.||++||.++++.|. +|+||||..
T Consensus 10 ~~~~DVvVIG~G~AGl~AAl~Aa~~G~---~V~lveK~~ 45 (598)
T PRK09078 10 DHKYDVVVVGAGGAGLRATLGMAEAGL---KTACITKVF 45 (598)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCC---cEEEEEccC
Confidence 346799999999999999999999876 899999975
No 238
>PLN02661 Putative thiazole synthesis
Probab=98.21 E-value=4.2e-06 Score=80.45 Aligned_cols=37 Identities=22% Similarity=0.413 Sum_probs=32.2
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYA 89 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~lie~~~~~ 89 (488)
...||+|||||++|++||+.|++. |. +|+|||+....
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~---kV~viEk~~~~ 128 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNV---KVAIIEQSVSP 128 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCC---eEEEEecCccc
Confidence 457999999999999999999975 44 89999998654
No 239
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.21 E-value=2.4e-05 Score=80.40 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=33.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHc----CCCCCcEEEEcCCCCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEH----GMADGRLCIVSKEAYAP 90 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~----g~~~~~V~lie~~~~~~ 90 (488)
+++|+|||||+|||+||+.|.++ |+ +|+|+|+++...
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~---~v~vlE~~~r~G 42 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPV---ELTLVEASDRVG 42 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCC---cEEEEEcCCcCc
Confidence 46899999999999999999998 66 899999998653
No 240
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.21 E-value=2.7e-05 Score=77.97 Aligned_cols=57 Identities=28% Similarity=0.437 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHcC-cEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 249 PSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 249 ~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
..+...+.+.+++.| ..+..++.+..++.. . ....|.+.+|+ +.+|.||+|+|...+
T Consensus 156 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~~ 213 (387)
T COG0665 156 RLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGAWAG 213 (387)
T ss_pred HHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCchHHH
Confidence 466777888888999 556668888888754 3 55678888887 999999999997643
No 241
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.21 E-value=2.2e-05 Score=80.57 Aligned_cols=68 Identities=21% Similarity=0.453 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHcC-cEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeecCccCChhhhhcCCc
Q 011351 249 PSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKPTVSPFERVGLN 318 (488)
Q Consensus 249 ~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~~~v~~v~l---~~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~ 318 (488)
..+.+.+.+.+++.| +++++++.|+.++..+++.+ .+.+ .+|+ ++.+|.||+|+|.... .+++.+|+.
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s~-~L~~~~Gi~ 256 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGAL-PLLQKSGIP 256 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcchH-HHHHHcCCC
Confidence 356777777788876 99999999999987555533 2332 3453 6999999999998764 566666654
No 242
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.21 E-value=1e-05 Score=81.93 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=33.0
Q ss_pred CCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCC
Q 011351 134 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA 174 (488)
Q Consensus 134 ~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~ 174 (488)
+..++++++|++++.... ++++++|.++.+|.||.|.|...
T Consensus 117 ~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 117 EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccH
Confidence 456778899999976543 56778888899999999999764
No 243
>PRK06996 hypothetical protein; Provisional
Probab=98.21 E-value=3.8e-06 Score=84.52 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=34.3
Q ss_pred cCCCCCeEEEEcCchHHHHHHHHHHHcCC-CCCcEEEEcCCC
Q 011351 47 FANENREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEA 87 (488)
Q Consensus 47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~-~~~~V~lie~~~ 87 (488)
|.++.++|+||||||+|+++|..|++.|. ...+|+|+|+.+
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 45677899999999999999999999872 123799999975
No 244
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.20 E-value=1e-05 Score=81.95 Aligned_cols=99 Identities=23% Similarity=0.376 Sum_probs=72.1
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccC----------HHHHHHHHHHHHHcCcEEEcCCeEEEE
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFT----------PSLAQRYEQLYQQNGVKFVKGASIKNL 275 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~----------~~~~~~~~~~l~~~GV~v~~~~~v~~i 275 (488)
..++++|||||+.|+.+|..|...+.+|++|++.+.+.....- ..+...+...++..+++++.+ +|++|
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~V~~I 87 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRA-VVYDV 87 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEE-EEEEE
Confidence 4578999999999999999987667899999988765332111 123333455666778888765 78999
Q ss_pred EeCCCCcEEEEEe----------CCCcEEEcCEEEEeecCccCC
Q 011351 276 EAGSDGRVAAVKL----------EDGSTIDADTIVIGIGAKPTV 309 (488)
Q Consensus 276 ~~~~~~~v~~v~l----------~~g~~i~~D~vi~a~G~~p~~ 309 (488)
+.+ +.. |.+ ++|+++++|.+|+|+|.+|..
T Consensus 88 d~~-~~~---v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~ 127 (424)
T PTZ00318 88 DFE-EKR---VKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNT 127 (424)
T ss_pred EcC-CCE---EEEecccccccccCCceEecCCEEEECCCcccCC
Confidence 854 332 333 466789999999999999764
No 245
>PLN02487 zeta-carotene desaturase
Probab=98.19 E-value=8e-06 Score=84.79 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=47.6
Q ss_pred cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCC--CC--cEEEEEe---CCCcEEEcCEEEEeecCc
Q 011351 247 FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--DG--RVAAVKL---EDGSTIDADTIVIGIGAK 306 (488)
Q Consensus 247 ~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~--~~--~v~~v~l---~~g~~i~~D~vi~a~G~~ 306 (488)
+...+.+.+.+.++++|.+|++++.|.+|+.+. ++ ++.++.+ .+++++.+|.||++++..
T Consensus 293 ~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 293 PDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP 359 (569)
T ss_pred chHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence 344577888899999999999999999998652 23 3677887 345579999999999864
No 246
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.19 E-value=5.5e-06 Score=85.08 Aligned_cols=97 Identities=23% Similarity=0.321 Sum_probs=71.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
.++++|||||+.|+.+|..|++.|. +|+|++..+... |.. +. .+ .....+.+
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~---~Vtlv~~~~~~l---~~~--------d~---~~-----------~~~l~~~l 223 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGV---DVTIVEFLDRAL---PNE--------DA---EV-----------SKEIAKQY 223 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEecCCCcC---Ccc--------CH---HH-----------HHHHHHHH
Confidence 4799999999999999999999886 899999765320 000 00 00 12345677
Q ss_pred HHCCCeEEeCCcEEEEeCCCcE--EEeC--CC--cEEEeccEEeccCCCCC
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQT--LITN--SG--KLLKYGSLIVATGCTAS 175 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~~--v~~~--~g--~~i~yd~lVlAtG~~~~ 175 (488)
++.+++++.+++|.+++.++.. +.+. +| +++++|.|++|+|..|.
T Consensus 224 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn 274 (466)
T PRK07818 224 KKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPR 274 (466)
T ss_pred HHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccC
Confidence 8899999999999999865543 3433 55 36999999999998775
No 247
>PRK06370 mercuric reductase; Validated
Probab=98.19 E-value=5.8e-06 Score=84.89 Aligned_cols=98 Identities=15% Similarity=0.245 Sum_probs=71.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
.++|+|||||+.|+.+|..|++.|. +|+|+++.+...- .. .. .+ .....+.+
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~---~Vtli~~~~~~l~---~~--------~~---~~-----------~~~l~~~l 222 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGS---EVTVIERGPRLLP---RE--------DE---DV-----------AAAVREIL 222 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCCCCc---cc--------CH---HH-----------HHHHHHHH
Confidence 4799999999999999999999886 8999998765210 00 00 00 01234567
Q ss_pred HHCCCeEEeCCcEEEEeCCCc--EEEe---CCCcEEEeccEEeccCCCCCc
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQ--TLIT---NSGKLLKYGSLIVATGCTASR 176 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~--~v~~---~~g~~i~yd~lVlAtG~~~~~ 176 (488)
++.|++++.++.|.+++.++. .+.+ .++.++.+|.+|+|+|..|..
T Consensus 223 ~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 223 EREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred HhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence 788999999999999987543 3333 234579999999999988763
No 248
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.19 E-value=1.5e-06 Score=84.89 Aligned_cols=39 Identities=23% Similarity=0.446 Sum_probs=31.3
Q ss_pred CCCeEEeCCcEEEEeCCCc---EEEeCCCcEEEeccEEeccCC
Q 011351 133 KGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGC 172 (488)
Q Consensus 133 ~~i~~~~~~~v~~id~~~~---~v~~~~g~~i~yd~lVlAtG~ 172 (488)
.+++++. ++|+++..++. -|.+.+|+.+.+|.+|+|||.
T Consensus 109 ~nl~i~~-~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 109 PNLTIIQ-GEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp TTEEEEE-S-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCeEEEE-cccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 5889875 69999988765 467889999999999999997
No 249
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.18 E-value=7.6e-06 Score=89.01 Aligned_cols=97 Identities=19% Similarity=0.419 Sum_probs=73.6
Q ss_pred EEEECCCHHHHHHHHHHHhCC---CcEEEEecCCcCc------ccccC-----HHHHHHHHHHHHHcCcEEEcCCeEEEE
Q 011351 210 VVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENHLL------QRLFT-----PSLAQRYEQLYQQNGVKFVKGASIKNL 275 (488)
Q Consensus 210 vvVvG~G~~g~e~A~~l~~~g---~~v~lv~~~~~~l------~~~~~-----~~~~~~~~~~l~~~GV~v~~~~~v~~i 275 (488)
++|||+|+.|+.+|..|.+++ .+|+++.+.+++. +..+. +++.....+.+++.||++++++.|+.+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 589999999999999988764 5899999887642 11111 112222346678899999999999999
Q ss_pred EeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh
Q 011351 276 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 310 (488)
Q Consensus 276 ~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~ 310 (488)
+.. .+ .|.+.+|+++++|.+|+|||.+|...
T Consensus 81 d~~--~k--~V~~~~g~~~~yD~LVlATGs~p~~p 111 (785)
T TIGR02374 81 DTD--QK--QVITDAGRTLSYDKLILATGSYPFIL 111 (785)
T ss_pred ECC--CC--EEEECCCcEeeCCEEEECCCCCcCCC
Confidence 853 22 46778898999999999999998754
No 250
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.18 E-value=5.5e-06 Score=84.52 Aligned_cols=97 Identities=19% Similarity=0.218 Sum_probs=72.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
.++++|||||+.|+..|..|++.|. +|+|+++.+... +.+. . .+ .....+.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~---~Vtli~~~~~il---~~~d--------~---~~-----------~~~~~~~l 217 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGS---ETHLVIRHERVL---RSFD--------S---MI-----------SETITEEY 217 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCCC---cccC--------H---HH-----------HHHHHHHH
Confidence 5799999999999999999999886 899999775421 0000 0 00 01235667
Q ss_pred HHCCCeEEeCCcEEEEeCCC---cEEEeCCC-cEEEeccEEeccCCCCC
Q 011351 131 KEKGIEMIYQDPVTSIDIEK---QTLITNSG-KLLKYGSLIVATGCTAS 175 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~---~~v~~~~g-~~i~yd~lVlAtG~~~~ 175 (488)
++.+++++.++.+++++.+. ..++++++ +.+.+|.+++|+|..|.
T Consensus 218 ~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 218 EKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPN 266 (450)
T ss_pred HHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcC
Confidence 88899999999999987542 24666677 57999999999998876
No 251
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.18 E-value=2.6e-05 Score=79.94 Aligned_cols=69 Identities=23% Similarity=0.401 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEE---eCCC--cEEEcCEEEEeecCccCChhhhhcCCc
Q 011351 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDG--STIDADTIVIGIGAKPTVSPFERVGLN 318 (488)
Q Consensus 248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~---l~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~ 318 (488)
+..+...+.+.+++.|++++++++|++++..+++.+ .+. +.+| .++.+|.||+|+|.... .+++.+|+.
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s~-~La~~~Gi~ 250 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGGGAL-PLLQKSGIP 250 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCcchH-HHHHHcCCC
Confidence 346777788888889999999999999986544433 232 2334 36899999999998764 566666654
No 252
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.18 E-value=8.9e-07 Score=89.63 Aligned_cols=117 Identities=22% Similarity=0.268 Sum_probs=29.6
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-----CCCc---------c----ccCCCCC---CCC-C
Q 011351 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-----ALTK---------G----YLFPLDK---KPA-R 110 (488)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~-----~l~~---------~----~~~~~~~---~~~-~ 110 (488)
||||||||+||++||..+++.|. +|+|||+.+....... .... + +...... ... .
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~---~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~ 77 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGA---KVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQED 77 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS----EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST----------
T ss_pred CEEEECccHHHHHHHHHHHHCCC---EEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccc
Confidence 79999999999999999999988 8999999986532110 0000 0 0000000 000 0
Q ss_pred CCCc---ccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcE---EEeCC---CcEEEeccEEeccCC
Q 011351 111 LPGF---HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQT---LITNS---GKLLKYGSLIVATGC 172 (488)
Q Consensus 111 ~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~---v~~~~---g~~i~yd~lVlAtG~ 172 (488)
..+. ...........+.+++.+.|+++++++.|.++..++.+ |++.+ ..++.++.+|-|||-
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 78 RYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0000 00111112233456667789999999999998887643 34433 456999999999994
No 253
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.18 E-value=4.3e-05 Score=77.97 Aligned_cols=67 Identities=21% Similarity=0.328 Sum_probs=47.6
Q ss_pred HHHHHHHHHHH-HcCcEEEcCCeEEEEEeCCCCcEEEEE---eCCCc--EEEcCEEEEeecCccCChhhhhcCCc
Q 011351 250 SLAQRYEQLYQ-QNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAKPTVSPFERVGLN 318 (488)
Q Consensus 250 ~~~~~~~~~l~-~~GV~v~~~~~v~~i~~~~~~~v~~v~---l~~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~ 318 (488)
.+.+.+.+.+. ..|+++++++.|+.++..+++.. .+. ..+++ ++.+|.||+|.|.... .+++.+|+.
T Consensus 185 ~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w-~v~v~~t~~g~~~~i~Ad~VV~AAGawS~-~La~~~Gi~ 257 (497)
T PRK13339 185 ALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGW-EVTVKDRNTGEKREQVADYVFIGAGGGAI-PLLQKSGIP 257 (497)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCE-EEEEEecCCCceEEEEcCEEEECCCcchH-HHHHHcCCC
Confidence 55666666665 45999999999999986534433 232 34452 6899999999999875 677777664
No 254
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.17 E-value=4.8e-06 Score=84.79 Aligned_cols=42 Identities=19% Similarity=0.308 Sum_probs=34.3
Q ss_pred CCeEEeCCcEEEEeC---------CCcEEEeCCCcEEEeccEEeccCCCCC
Q 011351 134 GIEMIYQDPVTSIDI---------EKQTLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 134 ~i~~~~~~~v~~id~---------~~~~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
+++++.+++|++++. +.-++++.+|+++.+|.||-|-|....
T Consensus 134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 134 NVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred CeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence 489999999999863 123677889999999999999998754
No 255
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.17 E-value=5e-06 Score=83.29 Aligned_cols=35 Identities=14% Similarity=0.335 Sum_probs=32.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
+++|+|||||++|+++|..|++.|+ +|+|||+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~---~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGI---DNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCC---CEEEEECCCC
Confidence 5799999999999999999999998 8999999874
No 256
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.17 E-value=5.5e-06 Score=85.05 Aligned_cols=98 Identities=19% Similarity=0.337 Sum_probs=71.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
.++++|||||+.|+.+|..|++.|. +|+|+++.+... +.. +. .+ .....+.+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------d~---~~-----------~~~l~~~l 217 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGS---EVTILQRSDRLL---PRE--------EP---EI-----------SAAVEEAL 217 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCCcCC---Ccc--------CH---HH-----------HHHHHHHH
Confidence 4799999999999999999999886 899999875421 000 00 00 01235567
Q ss_pred HHCCCeEEeCCcEEEEeCCCc--EEEeC---CCcEEEeccEEeccCCCCCc
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQ--TLITN---SGKLLKYGSLIVATGCTASR 176 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~--~v~~~---~g~~i~yd~lVlAtG~~~~~ 176 (488)
++.+++++.+++|+.++.++. .+++. +++++.+|.+++|+|..|..
T Consensus 218 ~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 218 AEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNT 268 (463)
T ss_pred HHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence 788999999988999876543 34443 23579999999999988763
No 257
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.16 E-value=6.8e-06 Score=84.29 Aligned_cols=98 Identities=15% Similarity=0.295 Sum_probs=73.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
.++++|||+|..|+.+|..|++.|. +|+++++.+... ...... . .....+.+
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~---~Vtli~~~~~~l-----------~~~d~~---~-----------~~~l~~~L 228 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGV---KVTLVSSRDRVL-----------PGEDAD---A-----------AEVLEEVF 228 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCcCC-----------CCCCHH---H-----------HHHHHHHH
Confidence 4689999999999999999999876 899999765421 000000 0 01245667
Q ss_pred HHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCCc
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR 176 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~~ 176 (488)
++.+++++.++++.+++.+.. .+.+.+|+++++|.+++|+|..|..
T Consensus 229 ~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 229 ARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred HHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCC
Confidence 889999999989999865433 4566788889999999999988763
No 258
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.16 E-value=1.1e-05 Score=79.15 Aligned_cols=99 Identities=23% Similarity=0.433 Sum_probs=77.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCcCccccc----------CHHHHHHHHHHHHHcC-cEEEcCCeEE
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQNG-VKFVKGASIK 273 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g--~~v~lv~~~~~~l~~~~----------~~~~~~~~~~~l~~~G-V~v~~~~~v~ 273 (488)
.+++||+|||+.|+.++..|.+.- .++++|++.+..+-..+ ..++...+.+.+++.+ |+++.+ +|+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~ 81 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT 81 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EEE
Confidence 578999999999999999999874 88999999976543221 1234455777788666 999877 688
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh
Q 011351 274 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 310 (488)
Q Consensus 274 ~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~ 310 (488)
.|+.+ .. .|.+.++.++++|.+|+++|..++..
T Consensus 82 ~ID~~-~k---~V~~~~~~~i~YD~LVvalGs~~~~f 114 (405)
T COG1252 82 DIDRD-AK---KVTLADLGEISYDYLVVALGSETNYF 114 (405)
T ss_pred EEccc-CC---EEEeCCCccccccEEEEecCCcCCcC
Confidence 98754 22 57788877899999999999998753
No 259
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.15 E-value=7.3e-06 Score=82.28 Aligned_cols=35 Identities=14% Similarity=0.292 Sum_probs=32.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
+.||+|||||++|+++|..|++.|+ +|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~---~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGI---DSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCC---CEEEEEcCCc
Confidence 5789999999999999999999988 8999999874
No 260
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.14 E-value=2.2e-05 Score=80.66 Aligned_cols=50 Identities=22% Similarity=0.388 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeec
Q 011351 251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 304 (488)
Q Consensus 251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G 304 (488)
+.+.+.+.+.+ .++++++.|++|+..++ .+ .|.+.+|+++.+|.||+++.
T Consensus 228 l~~~l~~~l~~--~~i~~~~~V~~I~~~~~-~~-~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 228 IIDRLEEVLTE--TVVKKGAVTTAVSKQGD-RY-EISFANHESIQADYVVLAAP 277 (463)
T ss_pred HHHHHHHhccc--ccEEcCCEEEEEEEcCC-EE-EEEECCCCEEEeCEEEECCC
Confidence 34444444433 57999999999987544 33 57778888899999999975
No 261
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.14 E-value=7.3e-06 Score=84.33 Aligned_cols=98 Identities=14% Similarity=0.276 Sum_probs=71.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++|+|||||+.|+.+|..|++.|. +|+|+++.+... +.. + ..+ .....+.
T Consensus 182 ~~~~vvVvGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------d---~~~-----------~~~~~~~ 233 (475)
T PRK06327 182 VPKKLAVIGAGVIGLELGSVWRRLGA---EVTILEALPAFL---AAA--------D---EQV-----------AKEAAKA 233 (475)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEeCCCccC---CcC--------C---HHH-----------HHHHHHH
Confidence 34799999999999999999999876 899999876421 000 0 000 0123456
Q ss_pred HHHCCCeEEeCCcEEEEeCCCc--EEEeCC--C--cEEEeccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNS--G--KLLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~--g--~~i~yd~lVlAtG~~~~ 175 (488)
+++.+++++.+++|++++.+.. .+.+.+ | +.+++|.|++|+|..|.
T Consensus 234 l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~ 285 (475)
T PRK06327 234 FTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPN 285 (475)
T ss_pred HHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccC
Confidence 7788999999999999986644 344333 3 46999999999998876
No 262
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.13 E-value=6e-06 Score=82.86 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=31.2
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
+||+||||||||++||..|++.|+ +|+|+|+.+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~---~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGI---QTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCC---cEEEEecCCC
Confidence 489999999999999999999988 8999998753
No 263
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.12 E-value=5.5e-06 Score=82.60 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=31.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
+.||+|||||++|+++|..|++.|+ +|+|+|+.+
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~---~v~l~E~~~ 34 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGI---KTTIFESKS 34 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCC---eEEEecCCC
Confidence 3689999999999999999999988 899999863
No 264
>PLN02507 glutathione reductase
Probab=98.12 E-value=9.2e-06 Score=83.85 Aligned_cols=98 Identities=19% Similarity=0.292 Sum_probs=73.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
.++++|||||+.|+..|..|++.|. +|+|+++.+.. +. . + +. .+ .....+.+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~---~Vtli~~~~~~------l~--~-~--d~---~~-----------~~~l~~~l 254 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGA---TVDLFFRKELP------LR--G-F--DD---EM-----------RAVVARNL 254 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEecCCc------Cc--c-c--CH---HH-----------HHHHHHHH
Confidence 4799999999999999999999876 89999976531 00 0 0 00 00 01234567
Q ss_pred HHCCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCCCCCc
Q 011351 131 KEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASR 176 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~~~~~ 176 (488)
++.+++++.++.|.+++.+. ..+.+.+|+++++|.+++|+|..|..
T Consensus 255 ~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 255 EGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNT 302 (499)
T ss_pred HhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCC
Confidence 88899999999999997543 34666678889999999999988753
No 265
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.12 E-value=8.4e-06 Score=82.07 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=31.7
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
.+|+|||||+||+++|..|++.|+ +|+|+|+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~---~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGW---AVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCc
Confidence 689999999999999999999988 8999999864
No 266
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.12 E-value=1.6e-05 Score=86.67 Aligned_cols=100 Identities=19% Similarity=0.438 Sum_probs=74.9
Q ss_pred CeEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCcCc------ccccC----HHHHHHHHHHHHHcCcEEEcCCeEE
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHLL------QRLFT----PSLAQRYEQLYQQNGVKFVKGASIK 273 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~----g~~v~lv~~~~~~l------~~~~~----~~~~~~~~~~l~~~GV~v~~~~~v~ 273 (488)
++++|||+|+.|+.+|..|.+. +.+|+++.+.+++. +..+. .++.....+.+++.||+++.++.+.
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~ 83 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAI 83 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEE
Confidence 5899999999999999999764 36899998887643 11111 1222223456788899999999999
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh
Q 011351 274 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP 311 (488)
Q Consensus 274 ~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~ 311 (488)
.++.. .+ .|.+.+|+++.+|.+|+|||.+|....
T Consensus 84 ~Id~~--~~--~V~~~~G~~i~yD~LVIATGs~p~~p~ 117 (847)
T PRK14989 84 TINRQ--EK--VIHSSAGRTVFYDKLIMATGSYPWIPP 117 (847)
T ss_pred EEeCC--Cc--EEEECCCcEEECCEEEECCCCCcCCCC
Confidence 99753 22 467788889999999999999987543
No 267
>PRK07236 hypothetical protein; Provisional
Probab=98.12 E-value=2.4e-05 Score=78.38 Aligned_cols=102 Identities=22% Similarity=0.321 Sum_probs=73.3
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc-----ccCHHHHHHHH------------------------
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LFTPSLAQRYE------------------------ 256 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~-----~~~~~~~~~~~------------------------ 256 (488)
...+|+|||+|+.|+.+|..|++.|.+|+++++.+..... .+.+...+.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g 84 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG 84 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence 3478999999999999999999999999999988643321 01222222221
Q ss_pred -------------------HHHHH--cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351 257 -------------------QLYQQ--NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 309 (488)
Q Consensus 257 -------------------~~l~~--~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~ 309 (488)
+.|.+ .++++++++++++++..+ +.+ .+.+++|+++.+|+||.|-|.....
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~-~~v-~v~~~~g~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 85 RVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDG-DRV-TARFADGRRETADLLVGADGGRSTV 156 (386)
T ss_pred CEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecC-CeE-EEEECCCCEEEeCEEEECCCCCchH
Confidence 11111 135689999999998653 333 5788999999999999999987643
No 268
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.12 E-value=6.6e-07 Score=88.32 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=30.4
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 89 (488)
++|+|||||+||+++|..|+++|+ +|+|||+.+..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~---~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGI---DVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTC---EEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhccc---ccccchhcccc
Confidence 589999999999999999999998 89999998753
No 269
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.10 E-value=1.1e-05 Score=82.85 Aligned_cols=98 Identities=15% Similarity=0.221 Sum_probs=70.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++++|||||+.|+..|..|++.|. +|+||++.+... +.. +. .+ .....+.
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G~---~Vtlie~~~~il---~~~--------d~---~~-----------~~~l~~~ 224 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLGA---QVTVVEYLDRIC---PGT--------DT---ET-----------AKTLQKA 224 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEeCCCCCC---CCC--------CH---HH-----------HHHHHHH
Confidence 35799999999999999999999886 899999765421 000 00 00 0124566
Q ss_pred HHHCCCeEEeCCcEEEEeCCCc--EEEeC---C--CcEEEeccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITN---S--GKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~---~--g~~i~yd~lVlAtG~~~~ 175 (488)
+++.+++++.++.|.++..+.. .+.+. + ++.+++|.|++|+|..|.
T Consensus 225 l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn 277 (466)
T PRK06115 225 LTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPY 277 (466)
T ss_pred HHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccc
Confidence 7788999999999999976433 23332 2 357999999999998765
No 270
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.10 E-value=7.1e-06 Score=85.65 Aligned_cols=36 Identities=25% Similarity=0.533 Sum_probs=32.9
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
+.++||+|||||+.|+++|+.|+++|. +|+|||+++
T Consensus 4 ~~~~DVvIIGGGi~G~~iA~~La~rG~---~V~LlEk~d 39 (546)
T PRK11101 4 SQETDVIIIGGGATGAGIARDCALRGL---RCILVERHD 39 (546)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCC---eEEEEECCC
Confidence 346899999999999999999999987 899999975
No 271
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.09 E-value=1.1e-05 Score=85.35 Aligned_cols=37 Identities=32% Similarity=0.348 Sum_probs=32.9
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
....||||||||.||++||.++++.|. +|+||||...
T Consensus 27 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~---~V~lveK~~~ 63 (617)
T PTZ00139 27 DHTYDAVVVGAGGAGLRAALGLVELGY---KTACISKLFP 63 (617)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCC---cEEEEeccCC
Confidence 346799999999999999999999876 8999999863
No 272
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.09 E-value=1.3e-05 Score=81.85 Aligned_cols=96 Identities=27% Similarity=0.379 Sum_probs=69.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
.++++|||||+.|+..|..|++.|. +|+||++.+... +.+. . .+ .....+ +
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~---~Vtli~~~~~ll---~~~d--------~---~~-----------~~~l~~-~ 219 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGT---RVTIVNRSTKLL---RHLD--------E---DI-----------SDRFTE-I 219 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC---cEEEEEccCccc---cccC--------H---HH-----------HHHHHH-H
Confidence 4799999999999999999999876 899999875421 0000 0 00 001122 2
Q ss_pred HHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
.+.+++++.++.|.+++.+.. .+++.+|+++.+|.+++|+|..|.
T Consensus 220 ~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 220 AKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPN 266 (452)
T ss_pred HhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcC
Confidence 346899999999999986543 455667888999999999998875
No 273
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.08 E-value=1.8e-05 Score=81.20 Aligned_cols=59 Identities=20% Similarity=0.300 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCC--CC--cEEEEEeCCC---cEEEcCEEEEeecCc
Q 011351 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--DG--RVAAVKLEDG---STIDADTIVIGIGAK 306 (488)
Q Consensus 248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~--~~--~v~~v~l~~g---~~i~~D~vi~a~G~~ 306 (488)
+..+.+.+.+.|++.|.+|+++++|++|+.++ ++ +++++.+.+| +++.+|.||+|++..
T Consensus 218 ~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 218 DKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP 283 (474)
T ss_pred chhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence 33456667888899999999999999998643 22 3666667554 569999999998854
No 274
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.07 E-value=1.5e-05 Score=78.69 Aligned_cols=101 Identities=17% Similarity=0.159 Sum_probs=69.2
Q ss_pred hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc--------cCHHHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 011351 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL--------FTPSLAQRYEQLYQQNGVKFVKGASIKNLE 276 (488)
Q Consensus 205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~--------~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~ 276 (488)
..+++++|||+|+.|+++|..|++.|.+|+++++.+.+.... .+.+......+.+.+.|++++.++.+..+.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~~ 95 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGE 95 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeecc
Confidence 357899999999999999999999999999999987654211 122333334456677799999998876553
Q ss_pred e---CCCCcEE--EEEeCCCcEEEcCEEEEeecCc
Q 011351 277 A---GSDGRVA--AVKLEDGSTIDADTIVIGIGAK 306 (488)
Q Consensus 277 ~---~~~~~v~--~v~l~~g~~i~~D~vi~a~G~~ 306 (488)
. ...+... .+..+ +..+.+|.||+|||..
T Consensus 96 ~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~ 129 (352)
T PRK12770 96 PLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTW 129 (352)
T ss_pred ccccccccccccccCCHH-HHHhhCCEEEEEeCCC
Confidence 2 1111110 01111 2247899999999984
No 275
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.07 E-value=4.7e-06 Score=60.47 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=28.0
Q ss_pred EEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351 56 IVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (488)
Q Consensus 56 IIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 89 (488)
|||||++||++|..|++.|+ +|+|+|+++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~---~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGY---RVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTS---EEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCC---cEEEEecCccc
Confidence 89999999999999999987 89999999875
No 276
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.06 E-value=5.7e-05 Score=72.43 Aligned_cols=97 Identities=21% Similarity=0.295 Sum_probs=73.4
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc-------------------------------------------
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------- 245 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~------------------------------------------- 245 (488)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.....
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE 81 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence 4899999999999999999999999999987532110
Q ss_pred ------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-CCcEEEcCEEEEeecCcc
Q 011351 246 ------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIGAKP 307 (488)
Q Consensus 246 ------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~-~g~~i~~D~vi~a~G~~p 307 (488)
.....+.+.+.+.+++.|++++.+++++++...++ .+ .+.+. ++.++.+|.||.|+|...
T Consensus 82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~-~~-~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDD-RV-VVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCC-EE-EEEEcCccEEEEeCEEEECCCcch
Confidence 01123556677778888999999999999875433 33 33333 345799999999999875
No 277
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.06 E-value=2.5e-05 Score=85.05 Aligned_cols=91 Identities=27% Similarity=0.294 Sum_probs=68.4
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc--------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~--------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 277 (488)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+... .++.+....-.+.+++.||++++++.+ .+.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di~- 615 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DLT- 615 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EEE-
Confidence 4689999999999999999999999999999987654221 123344455556778889999999866 222
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 278 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
+++.+...+|.||+|||..+.
T Consensus 616 ----------le~L~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 616 ----------VEQLKNEGYDYVVVAIGADKN 636 (1019)
T ss_pred ----------hhhheeccCCEEEECcCCCCC
Confidence 222334568999999999864
No 278
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.06 E-value=1.6e-05 Score=82.12 Aligned_cols=96 Identities=16% Similarity=0.213 Sum_probs=71.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
.++++|||||+.|+..|..|++.|. +|+|++.... . +.+.. . + .....+.+
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~---~Vtli~~~~~--l--~~~d~--------~---~-----------~~~l~~~l 232 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGF---DVTVAVRSIP--L--RGFDR--------Q---C-----------SEKVVEYM 232 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCcc--c--ccCCH--------H---H-----------HHHHHHHH
Confidence 4689999999999999999999886 8999975311 1 10100 0 0 12345677
Q ss_pred HHCCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCCCCC
Q 011351 131 KEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
++.+++++.++.+..+.... ..+.+.+|+++.+|.+++|+|..|.
T Consensus 233 ~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 233 KEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPD 279 (499)
T ss_pred HHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCC
Confidence 88899999998888776533 3466677888999999999998875
No 279
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.05 E-value=1.3e-05 Score=81.03 Aligned_cols=98 Identities=17% Similarity=0.299 Sum_probs=77.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
.++++|||+|+.|+.+|..|++.|. +|+++|..+...-. .+. ..+ .....+.+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~---~v~l~e~~~~~~~~-------~~~------~~~-----------~~~~~~~l 188 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGK---KVTLIEAADRLGGQ-------LLD------PEV-----------AEELAELL 188 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEcccccchh-------hhh------HHH-----------HHHHHHHH
Confidence 5799999999999999999999997 89999988763211 000 000 12356778
Q ss_pred HHCCCeEEeCCcEEEEeCCCcE-----EEeCCCcEEEeccEEeccCCCCC
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~~-----v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
+.++++++++..+..++...+. +...++..+++|.+++++|..|.
T Consensus 189 ~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 189 EKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred HHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 8899999999999999987543 56778888999999999998874
No 280
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.05 E-value=1.6e-05 Score=81.20 Aligned_cols=98 Identities=18% Similarity=0.341 Sum_probs=71.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++++|||||+.|+..|..|++.|. +|+|+++.+... |.. .. .+ .....+.
T Consensus 157 ~~~~v~ViGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------~~---~~-----------~~~l~~~ 208 (441)
T PRK08010 157 LPGHLGILGGGYIGVEFASMFANFGS---KVTILEAASLFL---PRE--------DR---DI-----------ADNIATI 208 (441)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCCC---CCc--------CH---HH-----------HHHHHHH
Confidence 34699999999999999999999876 899999865421 000 00 00 0123566
Q ss_pred HHHCCCeEEeCCcEEEEeCCCcE--EEeCCCcEEEeccEEeccCCCCCc
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTASR 176 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~~--v~~~~g~~i~yd~lVlAtG~~~~~ 176 (488)
+++.|++++.++.+.+++.++.. +.++++ ++.+|.+++|+|..|..
T Consensus 209 l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 209 LRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPAT 256 (441)
T ss_pred HHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence 78899999999999999865543 333444 48999999999988753
No 281
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.05 E-value=1.4e-05 Score=82.11 Aligned_cols=101 Identities=18% Similarity=0.307 Sum_probs=71.3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++++|||||+.|+..|..+........+|+|+++.+... +.. +. .+ .....+.
T Consensus 186 ~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il---~~~--------d~---~~-----------~~~l~~~ 240 (486)
T TIGR01423 186 PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL---RGF--------DS---TL-----------RKELTKQ 240 (486)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc---ccc--------CH---HH-----------HHHHHHH
Confidence 35789999999999999987765411123899999775421 000 00 00 1234566
Q ss_pred HHHCCCeEEeCCcEEEEeCCC---cEEEeCCCcEEEeccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
+++.+++++.++.+.++.... ..+++.+++++++|.+++|+|..|.
T Consensus 241 L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 241 LRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPR 289 (486)
T ss_pred HHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcC
Confidence 788999999999999987532 3566677888999999999998765
No 282
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.04 E-value=4.6e-06 Score=84.52 Aligned_cols=33 Identities=33% Similarity=0.452 Sum_probs=29.3
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
||||||+|.||++||.+++++|. +|+||||.+.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~---~V~lvek~~~ 33 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGA---KVLLVEKGPR 33 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT----EEEEESSSG
T ss_pred CEEEECCCHHHHHHHHHHhhhcC---eEEEEEeecc
Confidence 79999999999999999999987 8999999884
No 283
>PRK07121 hypothetical protein; Validated
Probab=98.04 E-value=0.00014 Score=75.21 Aligned_cols=59 Identities=24% Similarity=0.309 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC-Cc--EEEc-CEEEEeecCc
Q 011351 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GS--TIDA-DTIVIGIGAK 306 (488)
Q Consensus 248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~-g~--~i~~-D~vi~a~G~~ 306 (488)
...+...+.+.+++.|+++++++.++++..++++++.+|...+ ++ .+.+ +.||+|+|--
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~ 238 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGF 238 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCc
Confidence 3456777888888999999999999999865557777776543 32 4778 9999999954
No 284
>PRK13748 putative mercuric reductase; Provisional
Probab=98.03 E-value=1.9e-05 Score=83.30 Aligned_cols=96 Identities=20% Similarity=0.324 Sum_probs=70.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
.++++|||||+.|+.+|..|++.|. +|+||++...+ . ..+. .+ .....+.+
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtli~~~~~l-------~-----~~d~---~~-----------~~~l~~~l 320 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGS---KVTILARSTLF-------F-----REDP---AI-----------GEAVTAAF 320 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---EEEEEecCccc-------c-----ccCH---HH-----------HHHHHHHH
Confidence 4799999999999999999999886 89999864211 0 0000 00 02245667
Q ss_pred HHCCCeEEeCCcEEEEeCCCcE--EEeCCCcEEEeccEEeccCCCCCc
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTASR 176 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~~--v~~~~g~~i~yd~lVlAtG~~~~~ 176 (488)
++.|++++.++.+..++.++.. +.+.++ ++.+|.+++|+|..|..
T Consensus 321 ~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 321 RAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNT 367 (561)
T ss_pred HHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence 8899999999999998765443 344444 59999999999988763
No 285
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.02 E-value=1.6e-05 Score=84.30 Aligned_cols=36 Identities=31% Similarity=0.512 Sum_probs=32.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
...||||||+|.||++||..+++.|. +|+||||...
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~---~V~lieK~~~ 42 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGL---RVAVVCKSLF 42 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCC---CEEEEeccCC
Confidence 35799999999999999999999887 8999999753
No 286
>PRK06834 hypothetical protein; Provisional
Probab=98.01 E-value=8.8e-05 Score=76.41 Aligned_cols=107 Identities=23% Similarity=0.360 Sum_probs=78.8
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc---ccc--cC----------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---QRL--FT---------------------------------- 248 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l---~~~--~~---------------------------------- 248 (488)
..|+|||+|+.|+-+|..|++.|.+|+++++.+... ++. +.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 83 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD 83 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence 469999999999999999999999999999763211 000 00
Q ss_pred ----------------HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhh
Q 011351 249 ----------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF 312 (488)
Q Consensus 249 ----------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~ 312 (488)
..+.+.+.+.+++.|++++++++++.++.++++ + .+.+.+|+++.+|+||.|.|..+.. -
T Consensus 84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~-v-~v~~~~g~~i~a~~vVgADG~~S~v--R 159 (488)
T PRK06834 84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG-V-DVELSDGRTLRAQYLVGCDGGRSLV--R 159 (488)
T ss_pred cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEEEEecCCCCCc--H
Confidence 122344556667789999999999999865443 3 4667788889999999999998753 2
Q ss_pred hhcCCc
Q 011351 313 ERVGLN 318 (488)
Q Consensus 313 ~~~gl~ 318 (488)
+.+|+.
T Consensus 160 ~~lgi~ 165 (488)
T PRK06834 160 KAAGID 165 (488)
T ss_pred hhcCCC
Confidence 444444
No 287
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.01 E-value=2e-05 Score=80.66 Aligned_cols=90 Identities=22% Similarity=0.293 Sum_probs=70.0
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc--------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~--------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 277 (488)
.+++++|||+|+.|+++|..|.+.|.+|+++++.+.+... ..+.++.....+.+++.||++++++.+..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--- 215 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR--- 215 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC---
Confidence 4689999999999999999999999999999988765211 13556777777888999999999876521
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351 278 GSDGRVAAVKLEDGSTIDADTIVIGIGAK 306 (488)
Q Consensus 278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~ 306 (488)
.+.+++.. +.+|.||+|||..
T Consensus 216 -------~v~~~~~~-~~~d~vvlAtGa~ 236 (457)
T PRK11749 216 -------DITLDELR-AGYDAVFIGTGAG 236 (457)
T ss_pred -------ccCHHHHH-hhCCEEEEccCCC
Confidence 12233333 7899999999986
No 288
>PLN02463 lycopene beta cyclase
Probab=98.01 E-value=7e-05 Score=75.86 Aligned_cols=98 Identities=26% Similarity=0.299 Sum_probs=72.9
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc-ccc----------------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-QRL---------------------------------------- 246 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l-~~~---------------------------------------- 246 (488)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+... ++.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y 108 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY 108 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence 369999999999999999999999999998764211 100
Q ss_pred ---cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 247 ---FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 247 ---~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
....+.+.+.+.+.+.|++++ ..+|++++..+++ ..|.+++|+++++|.||.|+|..+.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~--~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK--SLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe--EEEEECCCCEEEcCEEEECcCCCcC
Confidence 001233445555667899997 4689999865333 3678899989999999999998764
No 289
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.00 E-value=2.3e-05 Score=80.57 Aligned_cols=96 Identities=14% Similarity=0.191 Sum_probs=68.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
..+++|||||+.|+.+|..|++.|. +|+|+++.... +.+. .. + .....+.+
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~---~Vtli~~~~~l----~~~d--------~~---~-----------~~~l~~~L 230 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGL---DVTVMVRSILL----RGFD--------QD---C-----------ANKVGEHM 230 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCC---cEEEEEecccc----cccC--------HH---H-----------HHHHHHHH
Confidence 4689999999999999999999886 89999853111 1000 00 0 01235667
Q ss_pred HHCCCeEEeCCcEEEEeCCCc--EEEeCCC---cEEEeccEEeccCCCCC
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSG---KLLKYGSLIVATGCTAS 175 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g---~~i~yd~lVlAtG~~~~ 175 (488)
++.|++++.++.+..+..... .+++.++ +++++|.+++|+|..|.
T Consensus 231 ~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn 280 (484)
T TIGR01438 231 EEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDAC 280 (484)
T ss_pred HHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcC
Confidence 888999999988888765432 4555554 37999999999998765
No 290
>PRK14727 putative mercuric reductase; Provisional
Probab=97.99 E-value=2.4e-05 Score=80.61 Aligned_cols=96 Identities=20% Similarity=0.363 Sum_probs=69.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
.++++|||||+.|+..|..|++.|. +|+|+++....+ .. +. .+ .....+.+
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~---~Vtlv~~~~~l~----~~--------d~---~~-----------~~~l~~~L 238 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGS---RVTILARSTLLF----RE--------DP---LL-----------GETLTACF 238 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---EEEEEEcCCCCC----cc--------hH---HH-----------HHHHHHHH
Confidence 4789999999999999999999876 899998642110 00 00 00 12245567
Q ss_pred HHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCCc
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR 176 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~~ 176 (488)
++.+++++.++.|..++.+.. .+.+.++ ++.+|.+++|+|..|..
T Consensus 239 ~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 239 EKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANT 285 (479)
T ss_pred HhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCc
Confidence 888999999999988875443 3444444 58999999999988753
No 291
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.98 E-value=3e-05 Score=79.14 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=30.7
Q ss_pred eEEEEcCchHHHHHHHHHHHcC-CCCCcEEEEcCCCC
Q 011351 53 EFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEAY 88 (488)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g-~~~~~V~lie~~~~ 88 (488)
||||||||.||++||.++++.| . +|+||||.+.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~---~V~vlEk~~~ 34 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAA---NVVLLEKMPV 34 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCc---cEEEEecCCC
Confidence 6999999999999999999998 6 8999999875
No 292
>PRK07045 putative monooxygenase; Reviewed
Probab=97.98 E-value=0.00011 Score=73.75 Aligned_cols=101 Identities=22% Similarity=0.280 Sum_probs=76.0
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc---------c--------------------------c------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------R--------------------------L------ 246 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~---------~--------------------------~------ 246 (488)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.. . .
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 85 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKEL 85 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCcE
Confidence 4799999999999999999999999999987643210 0 0
Q ss_pred -----------cC-------HHHHHHHHHHHH-HcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351 247 -----------FT-------PSLAQRYEQLYQ-QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 307 (488)
Q Consensus 247 -----------~~-------~~~~~~~~~~l~-~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p 307 (488)
.+ ..+.+.+.+.+. ..|++++++++++.++.++++.+..|.+++|+++.+|+||-|.|...
T Consensus 86 ~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S 165 (388)
T PRK07045 86 IASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARS 165 (388)
T ss_pred EEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCCh
Confidence 00 012233334443 35799999999999987766655578889999999999999999876
Q ss_pred C
Q 011351 308 T 308 (488)
Q Consensus 308 ~ 308 (488)
.
T Consensus 166 ~ 166 (388)
T PRK07045 166 M 166 (388)
T ss_pred H
Confidence 4
No 293
>PRK07538 hypothetical protein; Provisional
Probab=97.98 E-value=2.1e-05 Score=79.52 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=31.3
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
+||+|||||+||+++|..|++.|+ +|+|+|+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGI---EVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC---cEEEEEcCCc
Confidence 379999999999999999999988 8999999864
No 294
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.96 E-value=3e-05 Score=85.39 Aligned_cols=93 Identities=24% Similarity=0.201 Sum_probs=72.3
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc--------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~--------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 277 (488)
.+++|+|||+|+.|+.+|..|++.|++|+++++.+.+-.. .++.++.+...+.+++.||+|++++.+-.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~--- 381 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGK--- 381 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEecc---
Confidence 4799999999999999999999999999999987643321 13456666667788999999998864311
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEeecCc-cC
Q 011351 278 GSDGRVAAVKLEDGSTIDADTIVIGIGAK-PT 308 (488)
Q Consensus 278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~-p~ 308 (488)
.+.+++.....+|.|++|||.. |.
T Consensus 382 -------dit~~~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 382 -------TATLEDLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred -------EEeHHHhccccCCEEEEeCCCCCCC
Confidence 3555665556799999999995 53
No 295
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.96 E-value=0.00011 Score=73.81 Aligned_cols=108 Identities=27% Similarity=0.367 Sum_probs=79.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC-------------c-cc---------------------------
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-------------L-QR--------------------------- 245 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~-------------l-~~--------------------------- 245 (488)
...|+|||+|+.|+-+|..|++.|.+|+++++.+.. + +.
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV 85 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence 357999999999999999999999999999975311 0 00
Q ss_pred ---------cc---------------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 011351 246 ---------LF---------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 301 (488)
Q Consensus 246 ---------~~---------------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~ 301 (488)
.+ ...+.+.+.+.+++.|++++.++++++++.++ +.+ .+.+++|+++.+|.||.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~~v-~v~~~~g~~~~a~~vV~ 163 (392)
T PRK08773 86 WDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDA-DRV-RLRLDDGRRLEAALAIA 163 (392)
T ss_pred EeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecC-CeE-EEEECCCCEEEeCEEEE
Confidence 00 01233445556677899999999999998643 333 47778888999999999
Q ss_pred eecCccCChhhhhcCCc
Q 011351 302 GIGAKPTVSPFERVGLN 318 (488)
Q Consensus 302 a~G~~p~~~~~~~~gl~ 318 (488)
|.|..+. +.+.+++.
T Consensus 164 AdG~~S~--vr~~~g~~ 178 (392)
T PRK08773 164 ADGAAST--LRELAGLP 178 (392)
T ss_pred ecCCCch--HHHhhcCC
Confidence 9999874 33444443
No 296
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.96 E-value=2.5e-05 Score=80.26 Aligned_cols=98 Identities=15% Similarity=0.294 Sum_probs=70.0
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++++|||||+.|+..|..|++.|. +|+++++.+... +.+ +. .+ .....+.
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------d~---~~-----------~~~~~~~ 219 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGV---KVTVFERGDRIL---PLE--------DP---EV-----------SKQAQKI 219 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCcC---cch--------hH---HH-----------HHHHHHH
Confidence 35799999999999999999999876 899999875421 000 00 00 1123455
Q ss_pred HHHCCCeEEeCCcEEEEeCCCc-EEEe--CCC--cEEEeccEEeccCCCCCc
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQ-TLIT--NSG--KLLKYGSLIVATGCTASR 176 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~-~v~~--~~g--~~i~yd~lVlAtG~~~~~ 176 (488)
+++. +++++++++.+++.... .+++ .++ +++++|.+++|+|..|..
T Consensus 220 l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~ 270 (460)
T PRK06292 220 LSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNT 270 (460)
T ss_pred Hhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCC
Confidence 6777 99999999999976543 3442 233 469999999999988763
No 297
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.96 E-value=3.4e-05 Score=81.16 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=31.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
...||||||+|.||++||.++++.|. +|+|+||..
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~---~V~lleK~~ 40 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQ---SCALLSKVF 40 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCC---cEEEEEccC
Confidence 35799999999999999999999876 899999985
No 298
>PTZ00058 glutathione reductase; Provisional
Probab=97.96 E-value=2.9e-05 Score=80.75 Aligned_cols=97 Identities=18% Similarity=0.211 Sum_probs=70.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
.++|+|||||+.|+..|..|++.|. +|+|+++.+... +.. +. .+ .....+.+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~---~Vtli~~~~~il---~~~--------d~---~i-----------~~~l~~~L 288 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGA---ESYIFARGNRLL---RKF--------DE---TI-----------INELENDM 288 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC---cEEEEEeccccc---ccC--------CH---HH-----------HHHHHHHH
Confidence 5799999999999999999999886 899999875420 000 00 00 01234567
Q ss_pred HHCCCeEEeCCcEEEEeCCCc---EEEeCC-CcEEEeccEEeccCCCCC
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQ---TLITNS-GKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~---~v~~~~-g~~i~yd~lVlAtG~~~~ 175 (488)
++.+++++.+..+.+++.+.. .+...+ ++++.+|.|++|+|..|.
T Consensus 289 ~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn 337 (561)
T PTZ00058 289 KKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPN 337 (561)
T ss_pred HHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCC
Confidence 788999999999999986432 233334 457999999999997765
No 299
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.95 E-value=0.00015 Score=68.15 Aligned_cols=59 Identities=15% Similarity=0.138 Sum_probs=41.5
Q ss_pred cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351 247 FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 307 (488)
Q Consensus 247 ~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p 307 (488)
.......++++.-..-+=++.+++.|..+..-.+|. .++-.+|++-.+|.||+|+-...
T Consensus 215 V~ggS~~yvq~laa~~~~~i~t~~~V~~l~rlPdGv--~l~~~~G~s~rFD~vViAth~dq 273 (447)
T COG2907 215 VAGGSRAYVQRLAADIRGRIETRTPVCRLRRLPDGV--VLVNADGESRRFDAVVIATHPDQ 273 (447)
T ss_pred cccchHHHHHHHhccccceeecCCceeeeeeCCCce--EEecCCCCccccceeeeecChHH
Confidence 444445566665554444589999999998777764 35556798899999999976543
No 300
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=97.94 E-value=2.8e-05 Score=72.61 Aligned_cols=50 Identities=16% Similarity=0.233 Sum_probs=38.9
Q ss_pred HhHHHHCCCeEEeCCcEEEEeCC-----CcEEEeCCCcEEEeccEEeccCCCCCc
Q 011351 127 PEWYKEKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASR 176 (488)
Q Consensus 127 ~~~~~~~~i~~~~~~~v~~id~~-----~~~v~~~~g~~i~yd~lVlAtG~~~~~ 176 (488)
...+++.|+.++.+..|+.+... ...|.+.+|..+.++++|+++|+....
T Consensus 160 ~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k 214 (399)
T KOG2820|consen 160 QDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK 214 (399)
T ss_pred HHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh
Confidence 34556789999999888877632 236788899999999999999986543
No 301
>PRK10262 thioredoxin reductase; Provisional
Probab=97.91 E-value=0.00019 Score=69.98 Aligned_cols=100 Identities=19% Similarity=0.285 Sum_probs=69.8
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC---cC--------cc----cccCHHHHHHHHHHHHHcCcEEEcCC
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN---HL--------LQ----RLFTPSLAQRYEQLYQQNGVKFVKGA 270 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~---~~--------l~----~~~~~~~~~~~~~~l~~~GV~v~~~~ 270 (488)
+.++++|||+|+.|+.+|..+.++|.++++++... .+ ++ ....+.+.+.+.+.....++++..+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD- 83 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence 46789999999999999999999999998886321 10 01 0112345667777777788888776
Q ss_pred eEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351 271 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 309 (488)
Q Consensus 271 ~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~ 309 (488)
.+..++.. ++.. .+..++ .++.+|.||+|||..|..
T Consensus 84 ~v~~v~~~-~~~~-~v~~~~-~~~~~d~vilAtG~~~~~ 119 (321)
T PRK10262 84 HINKVDLQ-NRPF-RLTGDS-GEYTCDALIIATGASARY 119 (321)
T ss_pred EEEEEEec-CCeE-EEEecC-CEEEECEEEECCCCCCCC
Confidence 46677643 3322 343333 368999999999999863
No 302
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.91 E-value=0.0002 Score=63.12 Aligned_cols=137 Identities=23% Similarity=0.345 Sum_probs=88.7
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc------c-------------------------------CHH
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------F-------------------------------TPS 250 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~------~-------------------------------~~~ 250 (488)
..|+|||+|++|+-.|.+|++.|.+|.+++++-.+-... | +..
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~e 110 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSAE 110 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHHH
Confidence 569999999999999999999999999999873322110 0 112
Q ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-----------CCcEEEcCEEEEeecCccCCh-hh-hhc--
Q 011351 251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DGSTIDADTIVIGIGAKPTVS-PF-ERV-- 315 (488)
Q Consensus 251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~-----------~g~~i~~D~vi~a~G~~p~~~-~~-~~~-- 315 (488)
+...+....-+.|.++.....++.+.-.++.++.++..+ |--.+++++||-+||.....- ++ +..
T Consensus 111 ~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~~ 190 (262)
T COG1635 111 FASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRIPE 190 (262)
T ss_pred HHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhccc
Confidence 223333344566899999999998875544477777654 224689999999999876432 22 221
Q ss_pred -CCccc-CCC--------EEeCCCCCCCCCCEEEEceecc
Q 011351 316 -GLNSS-VGG--------IQVDGQFRTRMPGIFAIGDVAA 345 (488)
Q Consensus 316 -gl~~~-~g~--------i~vd~~~~t~~~~Ifa~GD~a~ 345 (488)
++... .+. ..|+.+. --+||+|++|=.+.
T Consensus 191 l~~~~~Ge~~mw~e~~E~lvV~~T~-eV~pgL~vaGMa~~ 229 (262)
T COG1635 191 LGIEVPGEKSMWAERGEDLVVENTG-EVYPGLYVAGMAVN 229 (262)
T ss_pred cccccCCCcchhhhHHHHHHHhccc-cccCCeEeehhhHH
Confidence 22211 111 2222222 24799999997664
No 303
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.90 E-value=0.00016 Score=72.73 Aligned_cols=100 Identities=17% Similarity=0.238 Sum_probs=73.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc----------------------------------cc-----
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------LF----- 247 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~----------------------------------~~----- 247 (488)
..+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+... ..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 468999999999999999999999999999877432110 00
Q ss_pred --------C----------------HHHHHHHHHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEe
Q 011351 248 --------T----------------PSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 302 (488)
Q Consensus 248 --------~----------------~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a 302 (488)
+ ..+.+.+.+.+.+. ++++++++++++++.++ +.+ .+.+.+|+++.+|.||.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~-~~v-~v~~~~g~~~~ad~vV~A 161 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDG-DGV-TVFDQQGNRWTGDALIGC 161 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCC-Cce-EEEEcCCCEEecCEEEEC
Confidence 0 01222334444444 49999999999998543 333 477888989999999999
Q ss_pred ecCccC
Q 011351 303 IGAKPT 308 (488)
Q Consensus 303 ~G~~p~ 308 (488)
.|....
T Consensus 162 dG~~S~ 167 (396)
T PRK08163 162 DGVKSV 167 (396)
T ss_pred CCcChH
Confidence 998764
No 304
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.90 E-value=0.00022 Score=72.35 Aligned_cols=107 Identities=21% Similarity=0.371 Sum_probs=76.7
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc--------------cc--------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------------LF-------------------------- 247 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~--------------~~-------------------------- 247 (488)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+..+ .+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA 85 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence 46999999999999999999999999999876321100 00
Q ss_pred ---------------------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351 248 ---------------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 306 (488)
Q Consensus 248 ---------------------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~ 306 (488)
...+.+.+.+..++.|++++.+++|+++... ++.+..+. .+|.++.+|.||.|+|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~-~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVE-ADGDVIEAKTVILADGVN 163 (428)
T ss_pred eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEE-cCCcEEECCEEEEEeCCC
Confidence 0012234556667789999999999998754 45554444 567789999999999985
Q ss_pred cCChhhhhcCCc
Q 011351 307 PTVSPFERVGLN 318 (488)
Q Consensus 307 p~~~~~~~~gl~ 318 (488)
. .+.+.+++.
T Consensus 164 s--~l~~~lgl~ 173 (428)
T PRK10157 164 S--ILAEKLGMA 173 (428)
T ss_pred H--HHHHHcCCC
Confidence 3 455555553
No 305
>PRK07190 hypothetical protein; Provisional
Probab=97.89 E-value=0.00035 Score=71.96 Aligned_cols=107 Identities=18% Similarity=0.314 Sum_probs=77.0
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc----------------------------------------cc-
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------------RL- 246 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~----------------------------------------~~- 246 (488)
..|+|||+|++|+-+|..|++.|.+|.++++.+.+.. +.
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i 85 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI 85 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence 4699999999999999999999999999987632100 00
Q ss_pred ---------cC------------HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC
Q 011351 247 ---------FT------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 305 (488)
Q Consensus 247 ---------~~------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~ 305 (488)
+. ..+...+.+.+++.|++++.++++++++.++++ + .+.+.+|+++.|++||.|.|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~-v-~v~~~~g~~v~a~~vVgADG~ 163 (487)
T PRK07190 86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAG-C-LTTLSNGERIQSRYVIGADGS 163 (487)
T ss_pred eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe-e-EEEECCCcEEEeCEEEECCCC
Confidence 00 012234455667789999999999999876444 3 355677888999999999998
Q ss_pred ccCChhhhhcCCc
Q 011351 306 KPTVSPFERVGLN 318 (488)
Q Consensus 306 ~p~~~~~~~~gl~ 318 (488)
+.. .-+.+|+.
T Consensus 164 ~S~--vR~~lgi~ 174 (487)
T PRK07190 164 RSF--VRNHFNVP 174 (487)
T ss_pred CHH--HHHHcCCC
Confidence 652 23445554
No 306
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.89 E-value=4.2e-05 Score=78.02 Aligned_cols=92 Identities=22% Similarity=0.235 Sum_probs=69.2
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc-------c-cccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------Q-RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l-------~-~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 277 (488)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+. + ..++.++.....+.+++.||+++++..+..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--- 208 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGK--- 208 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCC---
Confidence 45789999999999999999999999999999876541 1 014556666667778899999999874410
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEeecC-ccC
Q 011351 278 GSDGRVAAVKLEDGSTIDADTIVIGIGA-KPT 308 (488)
Q Consensus 278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~-~p~ 308 (488)
.+.+.+. ...+|.||+|||. .|.
T Consensus 209 -------~v~~~~~-~~~yd~viiAtGa~~p~ 232 (449)
T TIGR01316 209 -------TATLEEL-FSQYDAVFIGTGAGLPK 232 (449)
T ss_pred -------cCCHHHH-HhhCCEEEEeCCCCCCC
Confidence 2333333 2579999999998 554
No 307
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.89 E-value=6e-05 Score=79.99 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=33.0
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAY 88 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~lie~~~~ 88 (488)
+.+.+|+||||||+||++|..|++. |. +|+|||+.+.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi---~v~IiE~~~~ 67 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDI---TTRIVERKPG 67 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCC---cEEEEEcCCC
Confidence 4468999999999999999999995 87 8999999864
No 308
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.89 E-value=1e-05 Score=71.37 Aligned_cols=37 Identities=22% Similarity=0.375 Sum_probs=30.3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 89 (488)
..+||+|||||||||+||++|++.|+ +|+++|++...
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~---kV~v~E~~~~~ 52 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGL---KVAVIERKLSP 52 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS----EEEEESSSS-
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCC---eEEEEecCCCC
Confidence 46899999999999999999999988 89999998653
No 309
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.88 E-value=3.8e-05 Score=78.90 Aligned_cols=96 Identities=17% Similarity=0.323 Sum_probs=68.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
.++++|||||+.|+.+|..|++.|. +|+||++.+... |.. +. .+ .....+.+
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~---~Vtlv~~~~~il---~~~--------d~---~~-----------~~~~~~~l 225 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGS---EVDVVEMFDQVI---PAA--------DK---DI-----------VKVFTKRI 225 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---CEEEEecCCCCC---CcC--------CH---HH-----------HHHHHHHH
Confidence 4799999999999999999999987 899999876421 000 00 00 01234455
Q ss_pred HHCCCeEEeCCcEEEEeCCCc--EEEeCC--C--cEEEeccEEeccCCCCC
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNS--G--KLLKYGSLIVATGCTAS 175 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~--g--~~i~yd~lVlAtG~~~~ 175 (488)
++. ++++.++.|+.+..... .+.+.+ + +++++|.+|+|+|..|.
T Consensus 226 ~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn 275 (471)
T PRK06467 226 KKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPN 275 (471)
T ss_pred hhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeeccccc
Confidence 566 99999999998875433 344433 2 36999999999998876
No 310
>PRK08244 hypothetical protein; Provisional
Probab=97.88 E-value=0.00016 Score=74.85 Aligned_cols=101 Identities=22% Similarity=0.343 Sum_probs=73.1
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc--c----------------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--R---------------------------------------- 245 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~--~---------------------------------------- 245 (488)
..|+|||+|+.|+-+|..|.+.|.+|+++++.+.... +
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 3599999999999999999999999999997622110 0
Q ss_pred -------------ccC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC-cEEEcCEEEEeecCccC
Q 011351 246 -------------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPT 308 (488)
Q Consensus 246 -------------~~~-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g-~~i~~D~vi~a~G~~p~ 308 (488)
.++ ..+.+.+.+.+++.|++++.++++++++..+++....+...+| +++.+|+||.|.|....
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI 160 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence 000 1244556666777899999999999998654432222222356 47999999999999764
No 311
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.88 E-value=0.00017 Score=73.53 Aligned_cols=57 Identities=32% Similarity=0.588 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
+.+.+.+...+.||+++.++ |+.+...+++.+..|.+++|+++.+|++|=|+|++..
T Consensus 156 fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 156 FDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 45667777788999999884 7777777788888999999999999999999999753
No 312
>PRK07588 hypothetical protein; Provisional
Probab=97.88 E-value=0.00017 Score=72.46 Aligned_cols=98 Identities=22% Similarity=0.230 Sum_probs=71.4
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc---------cc---------------------------------
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------RL--------------------------------- 246 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~---------~~--------------------------------- 246 (488)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+-. +.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK 81 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence 689999999999999999999999999987643210 00
Q ss_pred --cC-----------------HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351 247 --FT-----------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 307 (488)
Q Consensus 247 --~~-----------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p 307 (488)
++ ..+.+.+.+.+ ..|+++++++++++++..+ +.+ .+.+++|+++.+|+||-|-|...
T Consensus 82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~-~~v-~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHR-DGV-RVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred EEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECC-CeE-EEEECCCCEEEeCEEEECCCCCc
Confidence 00 00112222222 3479999999999998653 333 57889999999999999999876
Q ss_pred CC
Q 011351 308 TV 309 (488)
Q Consensus 308 ~~ 309 (488)
..
T Consensus 159 ~v 160 (391)
T PRK07588 159 HV 160 (391)
T ss_pred cc
Confidence 54
No 313
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.88 E-value=4.1e-05 Score=78.97 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=30.8
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
+||+|||||+||+.+|..+++.|. +|+|+++...
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~---~v~Lie~~~~ 34 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGA---KTLLLTLNLD 34 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCC---CEEEEecccc
Confidence 589999999999999999999987 8999998743
No 314
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.87 E-value=4.9e-05 Score=80.51 Aligned_cols=65 Identities=15% Similarity=0.166 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCC-CCcEEEEEe---CCCc--EEEcCEEEEeecCccCChhhh
Q 011351 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKL---EDGS--TIDADTIVIGIGAKPTVSPFE 313 (488)
Q Consensus 248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~-~~~v~~v~l---~~g~--~i~~D~vi~a~G~~p~~~~~~ 313 (488)
+..+...+.+..++.|++++.++.|+++..++ ++.+..|.. .+++ ++.+|.||+|+|.... .+++
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~-~l~~ 301 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCD-EVRK 301 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHH-HHHH
Confidence 44677778888899999999999999998653 456666554 2343 5899999999997654 3444
No 315
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.87 E-value=3.5e-05 Score=75.45 Aligned_cols=100 Identities=21% Similarity=0.347 Sum_probs=78.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
...+||++|+|+.|+.+|..|+.... +||+|++++.. .. . ++.. .+ .....++
T Consensus 212 ~~~~vV~vG~G~ig~Evaa~l~~~~~---~VT~V~~e~~~-~~-----~--lf~~-----~i-----------~~~~~~y 264 (478)
T KOG1336|consen 212 LGGKVVCVGGGFIGMEVAAALVSKAK---SVTVVFPEPWL-LP-----R--LFGP-----SI-----------GQFYEDY 264 (478)
T ss_pred cCceEEEECchHHHHHHHHHHHhcCc---eEEEEccCccc-hh-----h--hhhH-----HH-----------HHHHHHH
Confidence 36789999999999999999999865 89999998763 11 0 1110 00 1235678
Q ss_pred HHHCCCeEEeCCcEEEEeCCC--c--EEEeCCCcEEEeccEEeccCCCCCc
Q 011351 130 YKEKGIEMIYQDPVTSIDIEK--Q--TLITNSGKLLKYGSLIVATGCTASR 176 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~--~--~v~~~~g~~i~yd~lVlAtG~~~~~ 176 (488)
+++.++++++++.+.+++... + .|.+.+|+++++|.||+.+|+.|..
T Consensus 265 ~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t 315 (478)
T KOG1336|consen 265 YENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNT 315 (478)
T ss_pred HHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccc
Confidence 899999999999888887544 2 5778899999999999999998864
No 316
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.87 E-value=0.00018 Score=72.51 Aligned_cols=106 Identities=26% Similarity=0.381 Sum_probs=77.9
Q ss_pred eEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCcCcc----c-------------------------------------
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQ----R------------------------------------- 245 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g--~~v~lv~~~~~~l~----~------------------------------------- 245 (488)
.|+|||+|+.|+-+|..|++.| .+|+++++.+...+ +
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR 82 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence 5899999999999999999985 89999987532100 0
Q ss_pred ----------c---------------cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEE
Q 011351 246 ----------L---------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 300 (488)
Q Consensus 246 ----------~---------------~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi 300 (488)
. ....+.+.+.+.+++.|++++.++++++++.++ +.+ .+.+++|+++.+|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~v-~v~~~~g~~~~ad~vI 160 (403)
T PRK07333 83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRD-EGV-TVTLSDGSVLEARLLV 160 (403)
T ss_pred CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC-CEE-EEEECCCCEEEeCEEE
Confidence 0 001234556666777899999999999998643 333 5778889899999999
Q ss_pred EeecCccCChhhhhcCCc
Q 011351 301 IGIGAKPTVSPFERVGLN 318 (488)
Q Consensus 301 ~a~G~~p~~~~~~~~gl~ 318 (488)
.|.|.... +.+.+++.
T Consensus 161 ~AdG~~S~--vr~~~g~~ 176 (403)
T PRK07333 161 AADGARSK--LRELAGIK 176 (403)
T ss_pred EcCCCChH--HHHHcCCC
Confidence 99998764 44455554
No 317
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.85 E-value=0.00024 Score=71.19 Aligned_cols=98 Identities=31% Similarity=0.364 Sum_probs=75.9
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecC-CcCcccc----------------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHLLQRL---------------------------------------- 246 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~-~~~l~~~---------------------------------------- 246 (488)
..|+|||+|+.|+-+|..|++.|.+|+++++. ..+.+..
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~~ 82 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGGR 82 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCCc
Confidence 56999999999999999999999999999986 1111100
Q ss_pred -------------------cCHHHHHHHHHHHHHcC-cEEEcCCeEEEEEeCCCCcEEEEEeC-CCcEEEcCEEEEeecC
Q 011351 247 -------------------FTPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIGA 305 (488)
Q Consensus 247 -------------------~~~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~~~v~~v~l~-~g~~i~~D~vi~a~G~ 305 (488)
--..+.+.+.+.+.+.+ |+++.+++|+.++.++ +.+. ++++ ||+++.||+||-|-|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~-~~v~-v~l~~dG~~~~a~llVgADG~ 160 (387)
T COG0654 83 RLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDG-DGVT-VTLSFDGETLDADLLVGADGA 160 (387)
T ss_pred eeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC-CceE-EEEcCCCcEEecCEEEECCCC
Confidence 00224555666676665 9999999999999754 4444 7777 9999999999999997
Q ss_pred cc
Q 011351 306 KP 307 (488)
Q Consensus 306 ~p 307 (488)
..
T Consensus 161 ~S 162 (387)
T COG0654 161 NS 162 (387)
T ss_pred ch
Confidence 64
No 318
>PRK05868 hypothetical protein; Validated
Probab=97.84 E-value=0.00021 Score=71.12 Aligned_cols=100 Identities=23% Similarity=0.217 Sum_probs=72.0
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc------------------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------ 245 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~------------------------------------------ 245 (488)
++|+|||+|+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 47999999999999999999999999999977322110
Q ss_pred --ccC--H----H--------HHHHHHHHHH---HcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351 246 --LFT--P----S--------LAQRYEQLYQ---QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 306 (488)
Q Consensus 246 --~~~--~----~--------~~~~~~~~l~---~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~ 306 (488)
... . . ....+.+.|. ..|++++++++++.++.+ ++.+ .+.+++|+++.+|+||-|-|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~-~~~v-~v~~~dg~~~~adlvIgADG~~ 159 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDD-GDSV-RVTFERAAAREFDLVIGADGLH 159 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEec-CCeE-EEEECCCCeEEeCEEEECCCCC
Confidence 000 0 0 0112223332 358999999999999854 3333 5888999999999999999987
Q ss_pred cCC
Q 011351 307 PTV 309 (488)
Q Consensus 307 p~~ 309 (488)
...
T Consensus 160 S~v 162 (372)
T PRK05868 160 SNV 162 (372)
T ss_pred chH
Confidence 643
No 319
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.84 E-value=0.00026 Score=74.62 Aligned_cols=66 Identities=21% Similarity=0.315 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC-Cc--EEEc-CEEEEeecCcc-CChhhhh
Q 011351 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GS--TIDA-DTIVIGIGAKP-TVSPFER 314 (488)
Q Consensus 248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~-g~--~i~~-D~vi~a~G~~p-~~~~~~~ 314 (488)
+..+...+.+.+++.||+++.++.++++..+ ++++.+|...+ |+ .+.+ +.||+|+|--. |.+++++
T Consensus 220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~~~ 290 (578)
T PRK12843 220 GNALIGRLLYSLRARGVRILTQTDVESLETD-HGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLRRE 290 (578)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHHHH
Confidence 4567778888899999999999999998754 67787776644 33 4676 78999988654 3344444
No 320
>PRK12831 putative oxidoreductase; Provisional
Probab=97.83 E-value=5.9e-05 Score=77.16 Aligned_cols=93 Identities=24% Similarity=0.312 Sum_probs=67.7
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc-------c-ccCH-HHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R-LFTP-SLAQRYEQLYQQNGVKFVKGASIKNLE 276 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~-------~-~~~~-~~~~~~~~~l~~~GV~v~~~~~v~~i~ 276 (488)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+-. . .++. .+.....+.+++.||++++++.+..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~-- 216 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK-- 216 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC--
Confidence 568899999999999999999999999999997654311 1 0122 2555566778889999999985521
Q ss_pred eCCCCcEEEEEeCCC-cEEEcCEEEEeecC-ccC
Q 011351 277 AGSDGRVAAVKLEDG-STIDADTIVIGIGA-KPT 308 (488)
Q Consensus 277 ~~~~~~v~~v~l~~g-~~i~~D~vi~a~G~-~p~ 308 (488)
.+.+++. +.+.+|.||+|||. .|.
T Consensus 217 --------~v~~~~~~~~~~~d~viiAtGa~~~~ 242 (464)
T PRK12831 217 --------TVTIDELLEEEGFDAVFIGSGAGLPK 242 (464)
T ss_pred --------cCCHHHHHhccCCCEEEEeCCCCCCC
Confidence 1223332 24579999999998 454
No 321
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.82 E-value=0.00024 Score=74.54 Aligned_cols=97 Identities=29% Similarity=0.427 Sum_probs=73.1
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc------------c---ccCHHHHHHHHHHHHHcCcEEEcCCeE
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------R---LFTPSLAQRYEQLYQQNGVKFVKGASI 272 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~------------~---~~~~~~~~~~~~~l~~~GV~v~~~~~v 272 (488)
..|+|||||+.|+.+|..+++.|.+|+++++.. +.. . ...+.+.+.+.+.+++.|++++ +..+
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V 82 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEV 82 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEE
Confidence 469999999999999999999999999998753 110 0 0124566777778888899986 5678
Q ss_pred EEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351 273 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 309 (488)
Q Consensus 273 ~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~ 309 (488)
..++.. +....+.+.++ ++.+|.+|+|||.+|..
T Consensus 83 ~~i~~~--~~~~~V~~~~g-~~~a~~lVlATGa~p~~ 116 (555)
T TIGR03143 83 LDVDFD--GDIKTIKTARG-DYKTLAVLIATGASPRK 116 (555)
T ss_pred EEEEec--CCEEEEEecCC-EEEEeEEEECCCCccCC
Confidence 888753 23334666565 58999999999998864
No 322
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.82 E-value=0.00033 Score=72.50 Aligned_cols=137 Identities=22% Similarity=0.294 Sum_probs=82.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc------------------------------c---------
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------------------------------F--------- 247 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~------------------------------~--------- 247 (488)
.|+|+|||+|.+|+-.+..|.+.|.+++++++.+.+-.-+ +
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f 80 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF 80 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence 3799999999999999999999999999999884322110 0
Q ss_pred --CHHHHHHHHHHHHHcCc--EEEcCCeEEEEEeCCCC---cEEEEEeC-CCc--EEEcCEEEEeecCc--cCChhhhhc
Q 011351 248 --TPSLAQRYEQLYQQNGV--KFVKGASIKNLEAGSDG---RVAAVKLE-DGS--TIDADTIVIGIGAK--PTVSPFERV 315 (488)
Q Consensus 248 --~~~~~~~~~~~l~~~GV--~v~~~~~v~~i~~~~~~---~v~~v~l~-~g~--~i~~D~vi~a~G~~--p~~~~~~~~ 315 (488)
..++.++++...+..++ .+.++++|++++..++. .--.|++. +|+ +..+|.||+|+|.. |+.+.-.--
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~ 160 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFP 160 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----C
T ss_pred CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhh
Confidence 14577888888887776 58899999999875432 11245554 343 35689999999974 433210012
Q ss_pred CCcccCCCEEeCCCCCC----CCCCEEEEcee
Q 011351 316 GLNSSVGGIQVDGQFRT----RMPGIFAIGDV 343 (488)
Q Consensus 316 gl~~~~g~i~vd~~~~t----~~~~Ifa~GD~ 343 (488)
|++.-.|.+.=-.+++. ..++|-++|-.
T Consensus 161 G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g 192 (531)
T PF00743_consen 161 GLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGG 192 (531)
T ss_dssp TGGGHCSEEEEGGG--TGGGGTTSEEEEESSS
T ss_pred hhhcCCeeEEccccCcChhhcCCCEEEEEeCC
Confidence 33322344433334443 24567777743
No 323
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.82 E-value=2.3e-05 Score=79.99 Aligned_cols=40 Identities=20% Similarity=0.399 Sum_probs=36.3
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 90 (488)
..++++|+|||||+|||+||++|.+.|+ +|+|+|..+...
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~---~V~VLEARdRvG 51 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGF---DVLVLEARDRVG 51 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCC---ceEEEeccCCcC
Confidence 5667899999999999999999999998 799999998654
No 324
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.81 E-value=7.1e-05 Score=76.67 Aligned_cols=92 Identities=17% Similarity=0.324 Sum_probs=69.6
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc-------c-cccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------Q-RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l-------~-~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 277 (488)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+. + ..++.++.....+.+++.|++++.++.+..-
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 217 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD-- 217 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence 46889999999999999999999999999999887542 1 1135566666677889999999999866221
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 278 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
+.+++ ....+|.||+|+|..+.
T Consensus 218 --------~~~~~-~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 218 --------ISLDD-LLEDYDAVFLGVGTYRS 239 (467)
T ss_pred --------cCHHH-HHhcCCEEEEEeCCCCC
Confidence 11111 12479999999999875
No 325
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.00034 Score=66.89 Aligned_cols=98 Identities=22% Similarity=0.370 Sum_probs=74.1
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCc-EEEEecC---------------CcCcccccCHHHHHHHHHHHHHcCcEEEcCCe
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPE---------------NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS 271 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~-v~lv~~~---------------~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~ 271 (488)
-.++|||+|+.|+-.|-++.+.+.+ +.+++.. +.+-.....+++.+.+.+..+..|+++.. ..
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~ 82 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE 82 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence 3689999999999999999999988 4444442 11111134567788888888888999988 66
Q ss_pred EEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351 272 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 309 (488)
Q Consensus 272 v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~ 309 (488)
+.+++..++ ...|.+++|+ +.++.||+|||..+..
T Consensus 83 v~~v~~~~~--~F~v~t~~~~-~~ak~vIiAtG~~~~~ 117 (305)
T COG0492 83 VEKVELEGG--PFKVKTDKGT-YEAKAVIIATGAGARK 117 (305)
T ss_pred EEEEeecCc--eEEEEECCCe-EEEeEEEECcCCcccC
Confidence 777775422 4578888887 9999999999998753
No 326
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.80 E-value=0.00027 Score=71.34 Aligned_cols=98 Identities=18% Similarity=0.323 Sum_probs=73.1
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc----------Cccc--ccC----------------------------
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH----------LLQR--LFT---------------------------- 248 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~----------~l~~--~~~---------------------------- 248 (488)
.|+|||+|+.|+-+|..|.+.|.+|+++++.+. ..++ .+.
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~ 83 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEMQ 83 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeEE
Confidence 599999999999999999999999999987641 0000 000
Q ss_pred ----------------------------HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEE
Q 011351 249 ----------------------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 300 (488)
Q Consensus 249 ----------------------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi 300 (488)
..+.+.+.+.+++.|++++.++++++++..+++ + .|.+++|+++.+|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~g~~~~a~~vV 161 (405)
T PRK05714 84 VWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD-W-LLTLADGRQLRAPLVV 161 (405)
T ss_pred EEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEEE
Confidence 012233445556679999999999999865443 3 5778899899999999
Q ss_pred EeecCccC
Q 011351 301 IGIGAKPT 308 (488)
Q Consensus 301 ~a~G~~p~ 308 (488)
.|.|....
T Consensus 162 gAdG~~S~ 169 (405)
T PRK05714 162 AADGANSA 169 (405)
T ss_pred EecCCCch
Confidence 99998764
No 327
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.80 E-value=7.3e-05 Score=76.14 Aligned_cols=92 Identities=18% Similarity=0.210 Sum_probs=67.0
Q ss_pred cCCeEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCcCcccc---------cCHHHHHHHHHHHHHcCcEEEcCCeEEE
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVG--WKLDTTIIFPENHLLQRL---------FTPSLAQRYEQLYQQNGVKFVKGASIKN 274 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~--~g~~v~lv~~~~~~l~~~---------~~~~~~~~~~~~l~~~GV~v~~~~~v~~ 274 (488)
.+++|+|||+|+.|+.+|..|++ .|.+|+++++.+.+.... ....+...+.+.+++.+|+++.+..+-.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~ 104 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR 104 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc
Confidence 46789999999999999999986 799999999988654211 1123445566777888999988755411
Q ss_pred EEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 275 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 275 i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
.+.+++-+ ..+|.||+|+|..+.
T Consensus 105 ----------dvtl~~L~-~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 105 ----------DVSLSELR-DLYHVVVLAYGAESD 127 (491)
T ss_pred ----------cccHHHHh-hhCCEEEEecCCCCC
Confidence 23344333 469999999999864
No 328
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.80 E-value=0.00025 Score=68.09 Aligned_cols=60 Identities=18% Similarity=0.313 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC---------------CcEEEcCEEEEeecCccCC
Q 011351 250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---------------GSTIDADTIVIGIGAKPTV 309 (488)
Q Consensus 250 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~---------------g~~i~~D~vi~a~G~~p~~ 309 (488)
.+..++-+..++.||+++.+....++.-++++.|.+|.++| |-++.+..-|+|-|.+...
T Consensus 184 ~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~L 258 (621)
T KOG2415|consen 184 QLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSL 258 (621)
T ss_pred HHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchh
Confidence 34556666778899999999988888888888888887754 2367888999999987653
No 329
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.79 E-value=0.00012 Score=75.60 Aligned_cols=82 Identities=20% Similarity=0.251 Sum_probs=64.9
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 285 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~ 285 (488)
.+++++|+|+|.+|+++|..|.++|.+|+++++.+. .....+.+.+++.||+++++..+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~--------~~~~~~~~~l~~~gv~~~~~~~~~------------ 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD--------ERHRALAAILEALGATVRLGPGPT------------ 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch--------hhhHHHHHHHHHcCCEEEECCCcc------------
Confidence 478999999999999999999999999999986642 223345566888899998875432
Q ss_pred EEeCCCcEEEcCEEEEeecCccCChhhh
Q 011351 286 VKLEDGSTIDADTIVIGIGAKPTVSPFE 313 (488)
Q Consensus 286 v~l~~g~~i~~D~vi~a~G~~p~~~~~~ 313 (488)
....+|.||+++|..|+.+++.
T Consensus 75 ------~~~~~D~Vv~s~Gi~~~~~~~~ 96 (480)
T PRK01438 75 ------LPEDTDLVVTSPGWRPDAPLLA 96 (480)
T ss_pred ------ccCCCCEEEECCCcCCCCHHHH
Confidence 1245899999999999988643
No 330
>PRK06184 hypothetical protein; Provisional
Probab=97.79 E-value=0.00032 Score=72.83 Aligned_cols=98 Identities=17% Similarity=0.258 Sum_probs=73.0
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc------------------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------ 245 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~------------------------------------------ 245 (488)
..|+|||+|+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 83 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV 83 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence 46999999999999999999999999999976221100
Q ss_pred ---------------------ccC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCcEEEcCEEE
Q 011351 246 ---------------------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTIV 300 (488)
Q Consensus 246 ---------------------~~~-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~~i~~D~vi 300 (488)
.++ ..+.+.+.+.+++.|+++++++++++++.++++ + .+.+ .+++++.+|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~-v-~v~~~~~~~~~~i~a~~vV 161 (502)
T PRK06184 84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADG-V-TARVAGPAGEETVRARYLV 161 (502)
T ss_pred EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc-E-EEEEEeCCCeEEEEeCEEE
Confidence 000 112345566677789999999999999865444 3 3444 556789999999
Q ss_pred EeecCcc
Q 011351 301 IGIGAKP 307 (488)
Q Consensus 301 ~a~G~~p 307 (488)
.|.|...
T Consensus 162 gADG~~S 168 (502)
T PRK06184 162 GADGGRS 168 (502)
T ss_pred ECCCCch
Confidence 9999875
No 331
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.79 E-value=3e-05 Score=78.96 Aligned_cols=35 Identities=29% Similarity=0.428 Sum_probs=28.6
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
||||||||+||..+|..|++.+.+..+|+|||++.
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~ 35 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD 35 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC
Confidence 79999999999999999999985336999999987
No 332
>PLN02546 glutathione reductase
Probab=97.77 E-value=7.9e-05 Score=77.62 Aligned_cols=99 Identities=21% Similarity=0.268 Sum_probs=69.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++|+|||||+.|+..|..|++.+. +|+|+++.+... +.+ +. .+ .....+.
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~~g~---~Vtlv~~~~~il---~~~--------d~---~~-----------~~~l~~~ 302 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNGLKS---DVHVFIRQKKVL---RGF--------DE---EV-----------RDFVAEQ 302 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCC---eEEEEEeccccc---ccc--------CH---HH-----------HHHHHHH
Confidence 35799999999999999999998876 899999765420 000 00 00 0123466
Q ss_pred HHHCCCeEEeCCcEEEEeCC-Cc--EEEeCCCcEEEeccEEeccCCCCCc
Q 011351 130 YKEKGIEMIYQDPVTSIDIE-KQ--TLITNSGKLLKYGSLIVATGCTASR 176 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~-~~--~v~~~~g~~i~yd~lVlAtG~~~~~ 176 (488)
+++.||+++.++.+.++... +. .+.+.+++...+|.+++|+|..|..
T Consensus 303 L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt 352 (558)
T PLN02546 303 MSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNT 352 (558)
T ss_pred HHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCC
Confidence 78899999999999888642 22 3344455545589999999988763
No 333
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.77 E-value=7.3e-05 Score=75.36 Aligned_cols=122 Identities=25% Similarity=0.279 Sum_probs=83.4
Q ss_pred CCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEE
Q 011351 157 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 236 (488)
Q Consensus 157 ~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv 236 (488)
.+..+.++.|..+.|........+++. .++ ...+++|+|||+|+.|+..|..|.+.|+.|+++
T Consensus 90 ~~~~v~i~~le~~i~d~~~~~g~i~~~-~~~----------------~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~ 152 (457)
T COG0493 90 EELPVNIGALERAIGDKADREGWIPGE-LPG----------------SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVF 152 (457)
T ss_pred CCCchhhhhHHHHHhhHHHHhCCCCCC-CCC----------------CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEe
Confidence 344567777777777554322222211 111 124689999999999999999999999999999
Q ss_pred ecCCcCccc--------ccCHHHHHHHHHHHHHcCcEEEcCCeEE-EEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351 237 FPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIK-NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 307 (488)
Q Consensus 237 ~~~~~~l~~--------~~~~~~~~~~~~~l~~~GV~v~~~~~v~-~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p 307 (488)
++.+..-.. .++.++.+...+.|++.|++|+.++.+- .+ .++. -.-++|.|++++|..-
T Consensus 153 e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~i-----------t~~~-L~~e~Dav~l~~G~~~ 220 (457)
T COG0493 153 ERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDI-----------TLEE-LLKEYDAVFLATGAGK 220 (457)
T ss_pred CCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcC-----------CHHH-HHHhhCEEEEeccccC
Confidence 887654321 2455788888899999999999987653 11 1111 1134599999999753
No 334
>PRK09126 hypothetical protein; Provisional
Probab=97.76 E-value=0.00035 Score=70.14 Aligned_cols=100 Identities=22% Similarity=0.341 Sum_probs=72.1
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc-------cc-----------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR----------------------------------- 245 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l-------~~----------------------------------- 245 (488)
-.|+|||+|+.|+-+|..|++.|.+|+++++.+.+- .+
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 83 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL 83 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence 359999999999999999999999999999764310 00
Q ss_pred --------ccCH---------------HHHHHHHHHH-HHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 011351 246 --------LFTP---------------SLAQRYEQLY-QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 301 (488)
Q Consensus 246 --------~~~~---------------~~~~~~~~~l-~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~ 301 (488)
.++. .+.+.+.+.+ +..|++++.++++++++..+ +.+ .|.+++|+++.+|+||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~-~~~-~v~~~~g~~~~a~~vI~ 161 (392)
T PRK09126 84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDD-DGA-QVTLANGRRLTARLLVA 161 (392)
T ss_pred cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcC-CeE-EEEEcCCCEEEeCEEEE
Confidence 0000 0111222222 34689999999999998643 333 57788999999999999
Q ss_pred eecCccCC
Q 011351 302 GIGAKPTV 309 (488)
Q Consensus 302 a~G~~p~~ 309 (488)
|.|..+..
T Consensus 162 AdG~~S~v 169 (392)
T PRK09126 162 ADSRFSAT 169 (392)
T ss_pred eCCCCchh
Confidence 99987653
No 335
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.75 E-value=7.3e-05 Score=79.01 Aligned_cols=97 Identities=20% Similarity=0.156 Sum_probs=67.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH-
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW- 129 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 129 (488)
.++|+|||||+.|+..|..|++.|. +|+||+..+... +. + +... .....+.
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~---eVTLIe~~~~ll---~~-----~---d~ei--------------s~~l~~~l 363 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGS---EVVSFEYSPQLL---PL-----L---DADV--------------AKYFERVF 363 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCC---eEEEEeccCccc---cc-----C---CHHH--------------HHHHHHHH
Confidence 4689999999999999999999886 899999876521 00 0 0000 0112222
Q ss_pred HHHCCCeEEeCCcEEEEeCCC--c--EEEeC-------CC--------cEEEeccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDIEK--Q--TLITN-------SG--------KLLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~--~--~v~~~-------~g--------~~i~yd~lVlAtG~~~~ 175 (488)
.++.+|+++.++.|.+++..+ . .+.+. ++ +++.+|.+++|||..|.
T Consensus 364 l~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pn 428 (659)
T PTZ00153 364 LKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPN 428 (659)
T ss_pred hhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccC
Confidence 356789999999999997653 2 23222 11 26999999999998876
No 336
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.75 E-value=0.00038 Score=69.61 Aligned_cols=97 Identities=22% Similarity=0.349 Sum_probs=72.0
Q ss_pred eEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCcCccc--------ccC-------------------------------
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQR--------LFT------------------------------- 248 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g-~~v~lv~~~~~~l~~--------~~~------------------------------- 248 (488)
.|+|||+|+.|+-+|..|++.| .+|+++++.+.+-.. .+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 3799999999999999999999 999999876422110 000
Q ss_pred ------------------------HHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEee
Q 011351 249 ------------------------PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI 303 (488)
Q Consensus 249 ------------------------~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~ 303 (488)
..+.+.+.+.+.+ .|++++.++++++++.++++ + .+.+++|+++.+|.||.|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~-~-~v~~~~g~~~~ad~vV~Ad 158 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY-V-RVTLDNGQQLRAKLLIAAD 158 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe-E-EEEECCCCEEEeeEEEEec
Confidence 1123334444555 49999999999999865433 3 5777888889999999999
Q ss_pred cCcc
Q 011351 304 GAKP 307 (488)
Q Consensus 304 G~~p 307 (488)
|...
T Consensus 159 G~~S 162 (382)
T TIGR01984 159 GANS 162 (382)
T ss_pred CCCh
Confidence 9764
No 337
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.75 E-value=9.6e-05 Score=76.08 Aligned_cols=90 Identities=24% Similarity=0.295 Sum_probs=68.1
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc-------cc-ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 277 (488)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+++. +. .+++++.....+.+++.||++++++.+..-
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 219 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVD-- 219 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCc--
Confidence 45799999999999999999999999999999887642 11 134566666667788999999999876311
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351 278 GSDGRVAAVKLEDGSTIDADTIVIGIGAK 306 (488)
Q Consensus 278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~ 306 (488)
+. .++....+|.|++|+|..
T Consensus 220 --------~~-~~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 220 --------IS-ADELKEQFDAVVLAGGAT 239 (485)
T ss_pred --------cC-HHHHHhhCCEEEEccCCC
Confidence 10 011235799999999998
No 338
>PLN02697 lycopene epsilon cyclase
Probab=97.74 E-value=0.00037 Score=71.93 Aligned_cols=98 Identities=22% Similarity=0.351 Sum_probs=70.9
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc-----------------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL----------------------------------------- 246 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~----------------------------------------- 246 (488)
-.|+|||+|+.|+-+|..+++.|.+|.++++...+....
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~ 188 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR 188 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence 359999999999999999999999999998642211000
Q ss_pred c-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351 247 F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 307 (488)
Q Consensus 247 ~-~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p 307 (488)
+ ...+.+.+.+.+.+.|+++ .+++|+++...++ .+..+.+.+|.++.+|.||.|+|..+
T Consensus 189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~-~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASD-GLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCC-cEEEEEEcCCcEEECCEEEECCCcCh
Confidence 0 0122344555567779998 5678999875433 33335667888999999999999876
No 339
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.74 E-value=0.0003 Score=72.87 Aligned_cols=95 Identities=23% Similarity=0.370 Sum_probs=68.6
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCC-cCc--c-----------------ccc---------------------
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN-HLL--Q-----------------RLF--------------------- 247 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~-~~l--~-----------------~~~--------------------- 247 (488)
.|+|||||+.|+++|..+++.|.+|.++++.. .+- + ..+
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~s 85 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNTS 85 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeecccC
Confidence 59999999999999999999999999998762 110 0 000
Q ss_pred ------------CH-HHHHHHHHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC
Q 011351 248 ------------TP-SLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 305 (488)
Q Consensus 248 ------------~~-~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~ 305 (488)
+. .+...+.+.+++. |++++ ...++++..+ ++++.+|.+.+|..+.|+.||+|+|.
T Consensus 86 kGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e-~grV~GV~t~dG~~I~Ak~VIlATGT 155 (618)
T PRK05192 86 KGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVE-NGRVVGVVTQDGLEFRAKAVVLTTGT 155 (618)
T ss_pred CCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEec-CCEEEEEEECCCCEEECCEEEEeeCc
Confidence 00 0123333444444 78886 4567777643 56788899999999999999999994
No 340
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.72 E-value=0.00046 Score=69.05 Aligned_cols=98 Identities=27% Similarity=0.345 Sum_probs=72.9
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc-------c--ccC-------------------------------
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R--LFT------------------------------- 248 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~-------~--~~~------------------------------- 248 (488)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+-. + .+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 389999999999999999999999999998753200 0 000
Q ss_pred -------------------------HHHHHHHHHHHHHcC-cEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEe
Q 011351 249 -------------------------PSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 302 (488)
Q Consensus 249 -------------------------~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a 302 (488)
..+.+.+.+.+.+.| ++++.++++++++..+ +.+ .+.+++|+++.+|+||.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~-~~~-~v~~~~g~~~~~~~vi~a 158 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHS-DHV-ELTLDDGQQLRARLLVGA 158 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecC-Cee-EEEECCCCEEEeeEEEEe
Confidence 112233445556666 9999999999998643 333 577889989999999999
Q ss_pred ecCccC
Q 011351 303 IGAKPT 308 (488)
Q Consensus 303 ~G~~p~ 308 (488)
.|....
T Consensus 159 dG~~S~ 164 (385)
T TIGR01988 159 DGANSK 164 (385)
T ss_pred CCCCCH
Confidence 998653
No 341
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.71 E-value=0.00027 Score=71.14 Aligned_cols=129 Identities=13% Similarity=0.159 Sum_probs=75.8
Q ss_pred cCCeEEEECCCHHHHHHHHHH-HhCCCcEEEEecCCcCcccc---cC------HHHHHHHHHHHHHcCcEEEcCCeEEEE
Q 011351 206 KAKKVVVVGGGYIGMEVAAAA-VGWKLDTTIIFPENHLLQRL---FT------PSLAQRYEQLYQQNGVKFVKGASIKNL 275 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l-~~~g~~v~lv~~~~~~l~~~---~~------~~~~~~~~~~l~~~GV~v~~~~~v~~i 275 (488)
.+++|+|||+|+.|+.+|..| ++.|.+|+++++.+.+.... .. ..+...+.+.+...+++++.+..+-.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~- 116 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV- 116 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence 468999999999999999976 46799999999998764310 11 23455555556667888875433211
Q ss_pred EeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCC
Q 011351 276 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 348 (488)
Q Consensus 276 ~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~ 348 (488)
.+..++= .-.+|.||+|+|..+....+ .+- +-+..+.-.+.+.+-.+++|.+.|...+.+
T Consensus 117 ---------Dvt~eeL-~~~YDAVIlAtGA~~l~ipi--~~~-~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYN 176 (506)
T PTZ00188 117 ---------DLKMEEL-RNHYNCVIFCCGASEVSIPI--GQQ-DEDKAVSGGETNPRKQNGIFHARDLIYFYN 176 (506)
T ss_pred ---------ccCHHHH-HhcCCEEEEEcCCCCCCCCc--ccc-cceeeeccccccccccCcEEehheEEEeec
Confidence 1111111 23689999999988542111 000 001111111111122568888888765544
No 342
>PRK08013 oxidoreductase; Provisional
Probab=97.70 E-value=0.00046 Score=69.50 Aligned_cols=99 Identities=25% Similarity=0.326 Sum_probs=72.3
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc--------c--ccC-----------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------R--LFT----------------------------- 248 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~--------~--~~~----------------------------- 248 (488)
..|+|||+|+.|+-+|..|++.|.+|+++++.+.+-. + .+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~ 83 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV 83 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence 4699999999999999999999999999997643110 0 000
Q ss_pred ---------------------------HHHHHHHHHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEE
Q 011351 249 ---------------------------PSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 300 (488)
Q Consensus 249 ---------------------------~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi 300 (488)
..+.+.+.+.+.+. ||++++++++++++.++++ +.+.+.+|+++.+|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~i~a~lvV 161 (400)
T PRK08013 84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE--AFLTLKDGSMLTARLVV 161 (400)
T ss_pred EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--EEEEEcCCCEEEeeEEE
Confidence 01122233334443 7999999999999865433 35778899999999999
Q ss_pred EeecCccC
Q 011351 301 IGIGAKPT 308 (488)
Q Consensus 301 ~a~G~~p~ 308 (488)
-|-|....
T Consensus 162 gADG~~S~ 169 (400)
T PRK08013 162 GADGANSW 169 (400)
T ss_pred EeCCCCcH
Confidence 99998764
No 343
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.70 E-value=0.00051 Score=68.84 Aligned_cols=105 Identities=24% Similarity=0.321 Sum_probs=76.0
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc--------------------cc--------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------------------LF-------------------- 247 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~--------------------~~-------------------- 247 (488)
..|+|||+|+.|+-+|..|.+.|.+|+++++.+.+... .+
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 85 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF 85 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence 36999999999999999999999999999977543110 00
Q ss_pred ------------------------CHHHHHHHHHHHHHcC-cEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEe
Q 011351 248 ------------------------TPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 302 (488)
Q Consensus 248 ------------------------~~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a 302 (488)
...+.+.+.+.+++.| ++++ +.++++++..++ .+ .+.+.+|+++.+|.||.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~-~~-~v~~~~g~~~~a~~vI~a 162 (388)
T PRK07608 86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPD-AA-TLTLADGQVLRADLVVGA 162 (388)
T ss_pred ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCC-eE-EEEECCCCEEEeeEEEEe
Confidence 0123334555566776 9998 889999875433 33 577888888999999999
Q ss_pred ecCccCChhhhhcCC
Q 011351 303 IGAKPTVSPFERVGL 317 (488)
Q Consensus 303 ~G~~p~~~~~~~~gl 317 (488)
.|.... +.+.+++
T Consensus 163 dG~~S~--vr~~~~~ 175 (388)
T PRK07608 163 DGAHSW--VRSQAGI 175 (388)
T ss_pred CCCCch--HHHhcCC
Confidence 998753 3344444
No 344
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.70 E-value=0.00043 Score=70.05 Aligned_cols=100 Identities=24% Similarity=0.371 Sum_probs=69.7
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc----cc--cc----------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----QR--LF---------------------------------- 247 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l----~~--~~---------------------------------- 247 (488)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.+- ++ .+
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 98 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDADY 98 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCCC
Confidence 469999999999999999999999999998764221 00 00
Q ss_pred ---------------------CHHHHHHHHHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEeCC-C--cEEEcCEEEEe
Q 011351 248 ---------------------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLED-G--STIDADTIVIG 302 (488)
Q Consensus 248 ---------------------~~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~~~v~~v~l~~-g--~~i~~D~vi~a 302 (488)
...+.+.+.+.+.+. |+++++++++++++.++++ + .+.+.+ + .++.+|+||.|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~-~-~v~~~~~~~~~~i~adlvIgA 176 (415)
T PRK07364 99 PGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA-A-TVTLEIEGKQQTLQSKLVVAA 176 (415)
T ss_pred CceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-e-EEEEccCCcceEEeeeEEEEe
Confidence 011222333334443 7999999999999865433 3 355553 2 36999999999
Q ss_pred ecCccCC
Q 011351 303 IGAKPTV 309 (488)
Q Consensus 303 ~G~~p~~ 309 (488)
.|.....
T Consensus 177 DG~~S~v 183 (415)
T PRK07364 177 DGARSPI 183 (415)
T ss_pred CCCCchh
Confidence 9987643
No 345
>PRK07208 hypothetical protein; Provisional
Probab=97.69 E-value=4.8e-05 Score=78.56 Aligned_cols=57 Identities=28% Similarity=0.399 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe--CCCc--EEEcCEEEEeecC
Q 011351 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDGS--TIDADTIVIGIGA 305 (488)
Q Consensus 249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l--~~g~--~i~~D~vi~a~G~ 305 (488)
..+.+.+.+.+++.|++++++++|++|..++++.+..+.. .+|+ ++.+|.||+++..
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~ 278 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPL 278 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCH
Confidence 3567788888888999999999999998765554444443 2453 5899999999775
No 346
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.69 E-value=0.00039 Score=68.46 Aligned_cols=100 Identities=29% Similarity=0.388 Sum_probs=70.6
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc-------------------------------------------
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------- 245 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~------------------------------------------- 245 (488)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD 82 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence 5899999999999999999999999999987221110
Q ss_pred ------------c------------c-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-CCc--EEEcC
Q 011351 246 ------------L------------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDAD 297 (488)
Q Consensus 246 ------------~------------~-~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~-~g~--~i~~D 297 (488)
. + -..+.+.+.+.+++.|++++++++++.++.+.++....+... +|+ ++.+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ad 162 (356)
T PF01494_consen 83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEAD 162 (356)
T ss_dssp SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEES
T ss_pred ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEe
Confidence 0 0 124566777777888999999999999886654422223332 343 68999
Q ss_pred EEEEeecCccC
Q 011351 298 TIVIGIGAKPT 308 (488)
Q Consensus 298 ~vi~a~G~~p~ 308 (488)
+||-|-|....
T Consensus 163 lvVgADG~~S~ 173 (356)
T PF01494_consen 163 LVVGADGAHSK 173 (356)
T ss_dssp EEEE-SGTT-H
T ss_pred eeecccCcccc
Confidence 99999999763
No 347
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.69 E-value=0.00013 Score=79.39 Aligned_cols=93 Identities=22% Similarity=0.282 Sum_probs=68.9
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc-------c-ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~-------~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 277 (488)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+-. . .++.++.+...+.+++.||++++++.+..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~--- 506 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK--- 506 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC---
Confidence 357899999999999999999999999999998643211 0 12445556666778889999999875411
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEeecC-ccC
Q 011351 278 GSDGRVAAVKLEDGSTIDADTIVIGIGA-KPT 308 (488)
Q Consensus 278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~-~p~ 308 (488)
.+.+++.....+|.||+|+|. .|.
T Consensus 507 -------~v~~~~l~~~~ydavvlAtGa~~~~ 531 (752)
T PRK12778 507 -------TITIEELEEEGFKGIFIASGAGLPN 531 (752)
T ss_pred -------cCCHHHHhhcCCCEEEEeCCCCCCC
Confidence 233444445679999999998 454
No 348
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.67 E-value=0.00023 Score=65.90 Aligned_cols=69 Identities=9% Similarity=0.127 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCc---EEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc
Q 011351 251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR---VAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS 320 (488)
Q Consensus 251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~---v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~ 320 (488)
+...+-+.++..|-+++++-+++.+..+.++. ...|.-..++++++..+|-|+|...+ ...+.+|++.+
T Consensus 198 v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sd-r~aa~sgc~~d 269 (453)
T KOG2665|consen 198 VTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSD-RCAALSGCELD 269 (453)
T ss_pred HHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHh-HHHHHhCCCCC
Confidence 33344455888899999999999988654431 22333344688999999999999875 34455555543
No 349
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.67 E-value=0.00019 Score=78.77 Aligned_cols=90 Identities=20% Similarity=0.209 Sum_probs=65.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc--------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeC
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 278 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~--------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~ 278 (488)
+++|+|||||+.|+.+|..|++.|.+|+++++.+.+-.. .++.+..+...+.+.+.||+++++...
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~------ 610 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSP------ 610 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEeccc------
Confidence 478999999999999999999999999999987643221 123344445556678889999987421
Q ss_pred CCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 279 SDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 279 ~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
.+.+.+.+...+|.||+|||..+.
T Consensus 611 ------d~~ve~l~~~gYDaVIIATGA~~~ 634 (1012)
T TIGR03315 611 ------DLTVAELKNQGYKYVILAIGAWKH 634 (1012)
T ss_pred ------ceEhhhhhcccccEEEECCCCCCC
Confidence 012223334669999999999864
No 350
>PRK06753 hypothetical protein; Provisional
Probab=97.66 E-value=0.00044 Score=68.89 Aligned_cols=98 Identities=14% Similarity=0.221 Sum_probs=69.9
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc----ccCHH----------------------------------
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----LFTPS---------------------------------- 250 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~----~~~~~---------------------------------- 250 (488)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .+.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 6899999999999999999999999999987432110 00000
Q ss_pred --------------HHHHHHHHHHH--cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 251 --------------LAQRYEQLYQQ--NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 251 --------------~~~~~~~~l~~--~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
-...+.+.|.+ .+.++++++++++++.+ ++.+ .+.+++|+++.+|+||-|-|....
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENE-TDKV-TIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEec-CCcE-EEEECCCCEEecCEEEECCCcchH
Confidence 01112333322 24678999999999854 3443 577889999999999999997754
No 351
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.66 E-value=0.00076 Score=68.49 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc-----EEEcCEEEEeecCccCChhhhhc
Q 011351 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPFERV 315 (488)
Q Consensus 248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~-----~i~~D~vi~a~G~~p~~~~~~~~ 315 (488)
+..+.-.......++|-++...++|+.+..+ ++ +.+|...|.+ ++.++.||.|+|.-.. ++++..
T Consensus 163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~re-~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d-~i~~~~ 232 (532)
T COG0578 163 DARLVAANARDAAEHGAEILTYTRVESLRRE-GG-VWGVEVEDRETGETYEIRARAVVNAAGPWVD-EILEMA 232 (532)
T ss_pred hHHHHHHHHHHHHhcccchhhcceeeeeeec-CC-EEEEEEEecCCCcEEEEEcCEEEECCCccHH-HHHHhh
Confidence 3455556667778899999999999999865 34 7788876543 5899999999998765 444443
No 352
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.64 E-value=0.00069 Score=68.00 Aligned_cols=99 Identities=22% Similarity=0.337 Sum_probs=72.5
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc---------------c-------------cc-------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------------Q-------------RL------------- 246 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l---------------~-------------~~------------- 246 (488)
-.|+|||+|+.|+-+|..|++.|.+|+++++.+... + ..
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLET 85 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEEE
Confidence 469999999999999999999999999998763100 0 00
Q ss_pred ---------c---------------CHHHHHHHHHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 011351 247 ---------F---------------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 301 (488)
Q Consensus 247 ---------~---------------~~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~ 301 (488)
+ ...+.+.+.+.+++. |++++.++++++++..+++ ..+.+++|+++.+|+||.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~ 163 (391)
T PRK08020 86 WEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG--WELTLADGEEIQAKLVIG 163 (391)
T ss_pred EeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--EEEEECCCCEEEeCEEEE
Confidence 0 011223344444555 9999999999999755333 357778888999999999
Q ss_pred eecCccC
Q 011351 302 GIGAKPT 308 (488)
Q Consensus 302 a~G~~p~ 308 (488)
|.|....
T Consensus 164 AdG~~S~ 170 (391)
T PRK08020 164 ADGANSQ 170 (391)
T ss_pred eCCCCch
Confidence 9999874
No 353
>PLN02661 Putative thiazole synthesis
Probab=97.64 E-value=0.0013 Score=63.47 Aligned_cols=99 Identities=19% Similarity=0.273 Sum_probs=69.2
Q ss_pred CeEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCcCcc----------cc----------------cC-----------H
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQ----------RL----------------FT-----------P 249 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~-g~~v~lv~~~~~~l~----------~~----------------~~-----------~ 249 (488)
-.|+|||+|..|+-+|..|++. +.+|+++++...+-. .. ++ .
T Consensus 93 ~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha~ 172 (357)
T PLN02661 93 TDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHAA 172 (357)
T ss_pred CCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecchH
Confidence 4799999999999999999975 789999998743211 00 00 0
Q ss_pred HHHHHHH-HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC------C--C------cEEEcCEEEEeecCcc
Q 011351 250 SLAQRYE-QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE------D--G------STIDADTIVIGIGAKP 307 (488)
Q Consensus 250 ~~~~~~~-~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~------~--g------~~i~~D~vi~a~G~~p 307 (488)
.+...+. +.+++.||+++.++.+.++..+ ++++.++.+. + + ..+.++.||+|||...
T Consensus 173 e~~stLi~ka~~~~gVkI~~~t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g 244 (357)
T PLN02661 173 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDG 244 (357)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeEEec-CCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCC
Confidence 1111222 3344578999999999998864 5677777631 1 1 2689999999999765
No 354
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.63 E-value=0.00072 Score=67.69 Aligned_cols=100 Identities=23% Similarity=0.315 Sum_probs=71.2
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc--Cc---c---c--ccCH----------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH--LL---Q---R--LFTP---------------------------- 249 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~--~l---~---~--~~~~---------------------------- 249 (488)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+. +. + + .+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~ 83 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET 83 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence 3699999999999999999999999999996531 00 0 0 0000
Q ss_pred ---------------------------HHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 011351 250 ---------------------------SLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 301 (488)
Q Consensus 250 ---------------------------~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~ 301 (488)
.+...+.+.+++ .|++++.++++++++.++++ + .+.+++|+++.+|+||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~-~-~v~~~~g~~~~~~lvIg 161 (384)
T PRK08849 84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG-N-RVTLESGAEIEAKWVIG 161 (384)
T ss_pred EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe-E-EEEECCCCEEEeeEEEE
Confidence 000111122223 37999999999999865443 3 57889999999999999
Q ss_pred eecCccCC
Q 011351 302 GIGAKPTV 309 (488)
Q Consensus 302 a~G~~p~~ 309 (488)
|.|.....
T Consensus 162 ADG~~S~v 169 (384)
T PRK08849 162 ADGANSQV 169 (384)
T ss_pred ecCCCchh
Confidence 99998754
No 355
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.63 E-value=0.00065 Score=70.32 Aligned_cols=98 Identities=19% Similarity=0.329 Sum_probs=70.6
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc------------------cc-------------------------
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------------QR------------------------- 245 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l------------------~~------------------------- 245 (488)
.|+|||+|+.|+++|..+++.|.+|.++++..... ..
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s 81 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS 81 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence 48999999999999999999999999998652110 00
Q ss_pred ----------ccCH-HHHHHHHHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351 246 ----------LFTP-SLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 307 (488)
Q Consensus 246 ----------~~~~-~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p 307 (488)
.+|+ .+...+.+.+++. |+.++.+ .++.+...+++.+.+|.+.+|..+.||.||+|+|.-.
T Consensus 82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 0000 1123444555555 7888765 5667654435678889999999999999999999874
No 356
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.63 E-value=0.00065 Score=68.09 Aligned_cols=97 Identities=22% Similarity=0.302 Sum_probs=70.4
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc----------------------------c--------------
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------L-------------- 246 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~----------------------------~-------------- 246 (488)
.|+|||+|+.|+-+|..|.+.|.+|+++++.+.+... .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 3799999999999999999999999999976422100 0
Q ss_pred -c-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351 247 -F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 307 (488)
Q Consensus 247 -~-~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p 307 (488)
+ ...+.+.+.+.+.+.|++++ ..++..++..+ +....+.+++|+++.+|.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~-~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADG-VALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecC-CceeEEEeCCCCEEEeCEEEECCCCch
Confidence 0 01233455555677789886 45788887542 333457778888899999999999876
No 357
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.63 E-value=0.00078 Score=67.66 Aligned_cols=107 Identities=17% Similarity=0.267 Sum_probs=78.6
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc------------------c------------------------
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------L------------------------ 246 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~------------------~------------------------ 246 (488)
.|+|||+|+.|.-+|..|++.|.+|.++++.+.+-.+ .
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~~ 84 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIEV 84 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEec
Confidence 5899999999999999999999999999986221110 0
Q ss_pred -------c-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCc
Q 011351 247 -------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN 318 (488)
Q Consensus 247 -------~-~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~ 318 (488)
+ ...+.+++.+..++.|.+++.+++++.+..++++.+.. ...++.++.++.||.|.|... .+.+.+++.
T Consensus 85 ~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~a~~vI~AdG~~s--~l~~~lg~~ 161 (396)
T COG0644 85 PVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVG-VRAGDDEVRAKVVIDADGVNS--ALARKLGLK 161 (396)
T ss_pred CCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEE-EEcCCEEEEcCEEEECCCcch--HHHHHhCCC
Confidence 0 11234556777788999999999999999765565543 344447899999999999865 344444443
No 358
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.62 E-value=5.4e-05 Score=75.35 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=30.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
..+||+|||||.||..||...++.|. ++.|+.-+.
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~---ktlLlT~~~ 37 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGA---KTLLLTLNL 37 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCC---eEEEEEcCC
Confidence 35899999999999999999999987 677777654
No 359
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.60 E-value=0.00073 Score=68.15 Aligned_cols=107 Identities=21% Similarity=0.302 Sum_probs=74.1
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecC-CcCc------cc--ccC------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHLL------QR--LFT------------------------------ 248 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~-~~~l------~~--~~~------------------------------ 248 (488)
..|+|||+|+.|+-+|..|.+.|.+|+++++. +... .+ .+.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~ 84 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEVW 84 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEEE
Confidence 46999999999999999999999999999974 1100 00 000
Q ss_pred --------------------------HHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 011351 249 --------------------------PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 301 (488)
Q Consensus 249 --------------------------~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~ 301 (488)
..+...+.+.+.+ .|++++.++++++++.++++ ..+.+++|+++.+|+||.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~lvIg 162 (405)
T PRK08850 85 EQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE--AWLTLDNGQALTAKLVVG 162 (405)
T ss_pred eCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe--EEEEECCCCEEEeCEEEE
Confidence 0011223333333 47999999999999764333 367888999999999999
Q ss_pred eecCccCChhhhhcCCc
Q 011351 302 GIGAKPTVSPFERVGLN 318 (488)
Q Consensus 302 a~G~~p~~~~~~~~gl~ 318 (488)
|.|.... +-+.+++.
T Consensus 163 ADG~~S~--vR~~~~~~ 177 (405)
T PRK08850 163 ADGANSW--LRRQMDIP 177 (405)
T ss_pred eCCCCCh--hHHHcCCC
Confidence 9997653 33444443
No 360
>PLN02529 lysine-specific histone demethylase 1
Probab=97.60 E-value=7.5e-05 Score=79.49 Aligned_cols=39 Identities=23% Similarity=0.387 Sum_probs=34.8
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 90 (488)
...++|+|||||+|||+||..|++.|+ +|+|+|+.+...
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~---~v~v~E~~~~~G 196 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGF---KVVVLEGRNRPG 196 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCC---cEEEEecCccCc
Confidence 456899999999999999999999998 799999987643
No 361
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.60 E-value=5.2e-05 Score=76.83 Aligned_cols=106 Identities=25% Similarity=0.326 Sum_probs=26.7
Q ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc--------------------------------------------
Q 011351 210 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------------- 245 (488)
Q Consensus 210 vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~-------------------------------------------- 245 (488)
|+|||||+.|+-.|..+++.|.+|.|+++.+.+-..
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~~ 81 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYGW 81 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST--------------
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccccccc
Confidence 899999999999999999999999999988432110
Q ss_pred ----ccCHH-HHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC---CcEEEcCEEEEeecCccCChhhhhcCC
Q 011351 246 ----LFTPS-LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GSTIDADTIVIGIGAKPTVSPFERVGL 317 (488)
Q Consensus 246 ----~~~~~-~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~---g~~i~~D~vi~a~G~~p~~~~~~~~gl 317 (488)
.+++. ....+.+.+++.|+++++++.+.++..+ ++++.+|.+.+ ..++.++.+|-|||- -+++..+|.
T Consensus 82 ~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~~~g~~~i~A~~~IDaTG~---g~l~~~aG~ 157 (428)
T PF12831_consen 82 VSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRD-GGRITGVIVETKSGRKEIRAKVFIDATGD---GDLAALAGA 157 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccc---ccccccccc
Confidence 01111 1223556677889999999999999864 67788888865 457999999999994 245555555
Q ss_pred cc
Q 011351 318 NS 319 (488)
Q Consensus 318 ~~ 319 (488)
+.
T Consensus 158 ~~ 159 (428)
T PF12831_consen 158 PY 159 (428)
T ss_dssp --
T ss_pred cc
Confidence 44
No 362
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.59 E-value=0.0002 Score=76.45 Aligned_cols=92 Identities=17% Similarity=0.319 Sum_probs=69.7
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc--------ccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l--------~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 277 (488)
.+++|+|||+|+.|+..|..|++.|.+|+++++.+.+. +..++..+.+...+.+++.||++++++.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 385 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR--- 385 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC---
Confidence 46899999999999999999999999999999887542 1124566666666788999999999976521
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 278 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
.+.+.+ ....+|.|++|+|..+.
T Consensus 386 -------~~~~~~-l~~~~DaV~latGa~~~ 408 (639)
T PRK12809 386 -------DITFSD-LTSEYDAVFIGVGTYGM 408 (639)
T ss_pred -------cCCHHH-HHhcCCEEEEeCCCCCC
Confidence 112222 12468999999998754
No 363
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.58 E-value=0.00081 Score=70.47 Aligned_cols=100 Identities=26% Similarity=0.338 Sum_probs=71.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc--c---------------------------------------
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--R--------------------------------------- 245 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~--~--------------------------------------- 245 (488)
..+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+.. +
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~ 89 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR 89 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence 35799999999999999999999999999997732110 0
Q ss_pred ---ccC-----------------HHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEeC--CC--cEEEcCEEE
Q 011351 246 ---LFT-----------------PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIV 300 (488)
Q Consensus 246 ---~~~-----------------~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l~--~g--~~i~~D~vi 300 (488)
.++ +.+.+.+.+.+.+ .|+++++++++++++.++++ + .+.++ +| +++.+|+||
T Consensus 90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~-v-~v~~~~~~G~~~~i~ad~vV 167 (538)
T PRK06183 90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDG-V-TVTLTDADGQRETVRARYVV 167 (538)
T ss_pred EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCe-E-EEEEEcCCCCEEEEEEEEEE
Confidence 000 1122334444444 38999999999999876544 3 34454 56 479999999
Q ss_pred EeecCccC
Q 011351 301 IGIGAKPT 308 (488)
Q Consensus 301 ~a~G~~p~ 308 (488)
-|.|....
T Consensus 168 gADG~~S~ 175 (538)
T PRK06183 168 GCDGANSF 175 (538)
T ss_pred ecCCCchh
Confidence 99998654
No 364
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.58 E-value=0.00023 Score=73.15 Aligned_cols=91 Identities=20% Similarity=0.314 Sum_probs=67.5
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc--------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~--------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 277 (488)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+... .++.++.....+.+++.||++++++.+.. +
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~- 219 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK-D- 219 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-c-
Confidence 4579999999999999999999999999999988655211 13445555666778889999999976531 1
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351 278 GSDGRVAAVKLEDGSTIDADTIVIGIGAKP 307 (488)
Q Consensus 278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p 307 (488)
+.. +.....+|.||+|+|..+
T Consensus 220 --------~~~-~~~~~~~d~vvlAtGa~~ 240 (471)
T PRK12810 220 --------ITA-EELLAEYDAVFLGTGAYK 240 (471)
T ss_pred --------CCH-HHHHhhCCEEEEecCCCC
Confidence 000 111257999999999973
No 365
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.57 E-value=0.00092 Score=70.23 Aligned_cols=102 Identities=22% Similarity=0.292 Sum_probs=71.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc----------------------------------c------
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------L------ 246 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~----------------------------------~------ 246 (488)
...|+|||+|+.|+-+|..|.+.|.+|+++++.+.+... .
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 102 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE 102 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence 357999999999999999999999999999877321100 0
Q ss_pred -------------------c-CHHHHHHHHHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCc-EEEcCEEEEeec
Q 011351 247 -------------------F-TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIG 304 (488)
Q Consensus 247 -------------------~-~~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~-~i~~D~vi~a~G 304 (488)
+ ...+.+.+.+.+++. ++++++++++++++.++++....+...+|+ ++.+|+||.|.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG 182 (547)
T PRK08132 103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDG 182 (547)
T ss_pred EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCC
Confidence 0 001223344445554 799999999999986544422233334554 699999999999
Q ss_pred CccC
Q 011351 305 AKPT 308 (488)
Q Consensus 305 ~~p~ 308 (488)
....
T Consensus 183 ~~S~ 186 (547)
T PRK08132 183 ARSP 186 (547)
T ss_pred CCcH
Confidence 8764
No 366
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.57 E-value=0.0018 Score=65.18 Aligned_cols=135 Identities=16% Similarity=0.267 Sum_probs=87.0
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc----------------------------------------c
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------------R 245 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~----------------------------------------~ 245 (488)
..++++|||+|++|+-.|..|.+.|.++++++|.+.+-. +
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 367899999999999999999999999999998843211 0
Q ss_pred cc-C-HHHHHHHHHHHHHcCc--EEEcCCeEEEEEeCCCCcEEEEEeCCC----cEEEcCEEEEeecCc--cCChhhhhc
Q 011351 246 LF-T-PSLAQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAK--PTVSPFERV 315 (488)
Q Consensus 246 ~~-~-~~~~~~~~~~l~~~GV--~v~~~~~v~~i~~~~~~~v~~v~l~~g----~~i~~D~vi~a~G~~--p~~~~~~~~ 315 (488)
.+ + .++.++++...+..++ .+.+++.+.+++...+|+- .|.+.++ ++.-+|.|++|+|.- |+.......
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW-~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~ 163 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKW-RVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGP 163 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCce-eEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCC
Confidence 10 1 1466777777777775 5788888888886542332 3444332 467899999999987 554433333
Q ss_pred CCcccCCCEEeCCCCCC----CCCCEEEEc
Q 011351 316 GLNSSVGGIQVDGQFRT----RMPGIFAIG 341 (488)
Q Consensus 316 gl~~~~g~i~vd~~~~t----~~~~Ifa~G 341 (488)
+++.=.|.+.--..++. ....|.++|
T Consensus 164 ~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG 193 (448)
T KOG1399|consen 164 GIESFKGKIIHSHDYKSPEKFRDKVVLVVG 193 (448)
T ss_pred chhhcCCcceehhhccCcccccCceEEEEC
Confidence 32222333332222332 235677888
No 367
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.56 E-value=0.0011 Score=66.83 Aligned_cols=99 Identities=16% Similarity=0.236 Sum_probs=69.5
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc------------------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------ 245 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~------------------------------------------ 245 (488)
++|+|||+|+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 68999999999999999999999999999977321000
Q ss_pred -cc-------------------C-HHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCcEEEcCEEE
Q 011351 246 -LF-------------------T-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTIV 300 (488)
Q Consensus 246 -~~-------------------~-~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~~i~~D~vi 300 (488)
.+ . ..+.+.+.+.+.+ .|+++++++++++++..+ +.+ .+++ .+++++.+|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~-~~v-~v~~~~~~~~~~~~adlvI 160 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTG-NSI-TATIIRTNSVETVSAAYLI 160 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCC-Cce-EEEEEeCCCCcEEecCEEE
Confidence 00 0 1122334444444 479999999999998643 333 3443 344679999999
Q ss_pred EeecCccC
Q 011351 301 IGIGAKPT 308 (488)
Q Consensus 301 ~a~G~~p~ 308 (488)
-|-|....
T Consensus 161 gADG~~S~ 168 (400)
T PRK06475 161 ACDGVWSM 168 (400)
T ss_pred ECCCccHh
Confidence 99998754
No 368
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.56 E-value=0.00025 Score=79.00 Aligned_cols=92 Identities=24% Similarity=0.302 Sum_probs=67.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc--------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeC
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 278 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~--------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~ 278 (488)
+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+... .++.++.+...+.+++.||++++++.+..
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~---- 505 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGK---- 505 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCC----
Confidence 578999999999999999999999999999987654211 13556777777888999999999864310
Q ss_pred CCCcEEEEEeCCC-cEEEcCEEEEeecCc-cC
Q 011351 279 SDGRVAAVKLEDG-STIDADTIVIGIGAK-PT 308 (488)
Q Consensus 279 ~~~~v~~v~l~~g-~~i~~D~vi~a~G~~-p~ 308 (488)
.+.+.+- +...+|.||+|||.. |.
T Consensus 506 ------~~~~~~l~~~~~yDaViIATGa~~pr 531 (1006)
T PRK12775 506 ------TFTVPQLMNDKGFDAVFLGVGAGAPT 531 (1006)
T ss_pred ------ccCHHHHhhccCCCEEEEecCCCCCC
Confidence 1122111 124589999999985 44
No 369
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.56 E-value=0.00038 Score=71.87 Aligned_cols=77 Identities=17% Similarity=0.167 Sum_probs=56.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++|+|||+|.+|+++|..|+++|. +|+++|..+... .....+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~---~V~~~d~~~~~~--------------------------------~~~~~~~ 59 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGA---RVTVVDDGDDER--------------------------------HRALAAI 59 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCchhh--------------------------------hHHHHHH
Confidence 35689999999999999999999987 799998653210 0112345
Q ss_pred HHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
+++.|++++.+..+. ....+|.+|+++|..+.
T Consensus 60 l~~~gv~~~~~~~~~--------------~~~~~D~Vv~s~Gi~~~ 91 (480)
T PRK01438 60 LEALGATVRLGPGPT--------------LPEDTDLVVTSPGWRPD 91 (480)
T ss_pred HHHcCCEEEECCCcc--------------ccCCCCEEEECCCcCCC
Confidence 677899998875432 01458999999998765
No 370
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.56 E-value=0.0049 Score=62.59 Aligned_cols=100 Identities=18% Similarity=0.272 Sum_probs=73.1
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCc-EEEEecCCcCccc-----------------------cc------C--HHHHH
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQR-----------------------LF------T--PSLAQ 253 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~-v~lv~~~~~~l~~-----------------------~~------~--~~~~~ 253 (488)
...+++|||+|++|+-+|..|.+.|.. +.++++++.+-.. .+ . ..+.+
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~ 86 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKD 86 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHH
Confidence 346799999999999999999999998 9999887421110 01 0 12577
Q ss_pred HHHHHHHHcCcE--EEcCCeEEEEEeCCCCcEEEEEeCCCcE--EEcCEEEEeecC
Q 011351 254 RYEQLYQQNGVK--FVKGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGA 305 (488)
Q Consensus 254 ~~~~~l~~~GV~--v~~~~~v~~i~~~~~~~v~~v~l~~g~~--i~~D~vi~a~G~ 305 (488)
++...+++.++. +..++.|+.+..++++..-.|++++|.+ +.+|.||+|||.
T Consensus 87 y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~ 142 (443)
T COG2072 87 YIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGH 142 (443)
T ss_pred HHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecC
Confidence 788888877654 4455666666666666666788888765 459999999998
No 371
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.54 E-value=0.0011 Score=66.21 Aligned_cols=98 Identities=19% Similarity=0.292 Sum_probs=70.7
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCC----cCc--cc--cc---------------------------------
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN----HLL--QR--LF--------------------------------- 247 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~----~~l--~~--~~--------------------------------- 247 (488)
+|+|||+|+.|+-+|..|++.|.+|+++++.+ .+. .+ .+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 82 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDNK 82 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEECC
Confidence 58999999999999999999999999999641 100 00 00
Q ss_pred --------------------CHHHHHHHHHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351 248 --------------------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 306 (488)
Q Consensus 248 --------------------~~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~ 306 (488)
...+.+.+.+.+.+. +++++.+++++++...+++ + .+.++++ ++.+|+||-|-|..
T Consensus 83 g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v-~v~~~~~-~~~adlvIgADG~~ 159 (374)
T PRK06617 83 ASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY-S-IIKFDDK-QIKCNLLIICDGAN 159 (374)
T ss_pred CceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe-E-EEEEcCC-EEeeCEEEEeCCCC
Confidence 012334444555555 4899999999999865433 3 4777776 89999999999987
Q ss_pred cCC
Q 011351 307 PTV 309 (488)
Q Consensus 307 p~~ 309 (488)
...
T Consensus 160 S~v 162 (374)
T PRK06617 160 SKV 162 (374)
T ss_pred chh
Confidence 653
No 372
>PRK09897 hypothetical protein; Provisional
Probab=97.53 E-value=0.0015 Score=67.46 Aligned_cols=99 Identities=18% Similarity=0.220 Sum_probs=65.8
Q ss_pred CeEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCcCcc-----------------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQ----------------------------------------- 244 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g--~~v~lv~~~~~~l~----------------------------------------- 244 (488)
++|+|||+|+.|+-++..|.+.+ .+|++++++..+-.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 57999999999999999998764 37899887522110
Q ss_pred -----------------cc-cCHHHHHH---HHHHHHHcC--cEEEcCCeEEEEEeCCCCcEEEEEeCC-CcEEEcCEEE
Q 011351 245 -----------------RL-FTPSLAQR---YEQLYQQNG--VKFVKGASIKNLEAGSDGRVAAVKLED-GSTIDADTIV 300 (488)
Q Consensus 245 -----------------~~-~~~~~~~~---~~~~l~~~G--V~v~~~~~v~~i~~~~~~~v~~v~l~~-g~~i~~D~vi 300 (488)
+. ++..+... +.+.+.+.| +.++.+++|+.++..+++ + .+.+.+ |..+.+|.||
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g-~-~V~t~~gg~~i~aD~VV 159 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG-V-MLATNQDLPSETFDLAV 159 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE-E-EEEECCCCeEEEcCEEE
Confidence 00 00011122 222334555 788889899999865433 3 466655 4679999999
Q ss_pred EeecCccC
Q 011351 301 IGIGAKPT 308 (488)
Q Consensus 301 ~a~G~~p~ 308 (488)
+|+|..++
T Consensus 160 LAtGh~~p 167 (534)
T PRK09897 160 IATGHVWP 167 (534)
T ss_pred ECCCCCCC
Confidence 99997543
No 373
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.53 E-value=0.00027 Score=75.52 Aligned_cols=92 Identities=21% Similarity=0.265 Sum_probs=67.9
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc-------cc-ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 277 (488)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .++.++.+...+.+++.|+++++++.+. .
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~-- 268 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-R-- 268 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-C--
Confidence 46799999999999999999999999999999887641 11 1345566666677888999999887541 1
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 278 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
.+.+.+.+ ..+|.|++|+|..+.
T Consensus 269 -------dv~~~~~~-~~~DaVilAtGa~~~ 291 (652)
T PRK12814 269 -------DITLEELQ-KEFDAVLLAVGAQKA 291 (652)
T ss_pred -------ccCHHHHH-hhcCEEEEEcCCCCC
Confidence 11222222 359999999998754
No 374
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.53 E-value=0.0038 Score=71.07 Aligned_cols=37 Identities=30% Similarity=0.356 Sum_probs=33.3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 89 (488)
...||||||+|.||++||.++++.|. +|+|+||.+..
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga---~VivlEK~~~~ 444 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGA---QVILLEKEAKL 444 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEEccCCC
Confidence 35799999999999999999999887 89999998753
No 375
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.53 E-value=0.00058 Score=67.77 Aligned_cols=93 Identities=23% Similarity=0.309 Sum_probs=64.0
Q ss_pred EEEECCCHHHHHHHHHHHhC--CCcEEEEecCCcCccc--------ccCHHHH---------------------------
Q 011351 210 VVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQR--------LFTPSLA--------------------------- 252 (488)
Q Consensus 210 vvVvG~G~~g~e~A~~l~~~--g~~v~lv~~~~~~l~~--------~~~~~~~--------------------------- 252 (488)
++|||+|+.|+.+|..|.+. |.+|.++++.+.+.+. .+++...
T Consensus 2 viIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~~ 81 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLKT 81 (370)
T ss_pred EEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcCC
Confidence 78999999999999999987 8999999987633221 0111110
Q ss_pred -------HHHHHH-HHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 253 -------QRYEQL-YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 253 -------~~~~~~-l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
..+.+. +++.+..++++.+|++++. + .+++.+|+++.+|.||.|.|..+.
T Consensus 82 ~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~--~----~v~l~dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 82 AYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDA--D----GVDLAPGTRINARSVIDCRGFKPS 139 (370)
T ss_pred CceEEEHHHHHHHHHHhhcccEEecCEEEEEeC--C----EEEECCCCEEEeeEEEECCCCCCC
Confidence 011112 2333444777888988853 2 355688999999999999998864
No 376
>PRK10015 oxidoreductase; Provisional
Probab=97.52 E-value=0.0013 Score=66.69 Aligned_cols=98 Identities=19% Similarity=0.306 Sum_probs=71.3
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc------------------ccc-----------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------------QRL----------------------- 246 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l------------------~~~----------------------- 246 (488)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+- +..
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESA 85 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCc
Confidence 369999999999999999999999999998763210 000
Q ss_pred --c------------------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351 247 --F------------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 306 (488)
Q Consensus 247 --~------------------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~ 306 (488)
+ ...+.+.+.+.+++.|++++.+++|+.+... ++.+..+.. ++.++.+|.||.|.|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~-~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 86 VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVRE-GNKVTGVQA-GDDILEANVVILADGVN 163 (429)
T ss_pred eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEe-CCEEEEEEe-CCeEEECCEEEEccCcc
Confidence 0 0012234556667889999999999998754 455544543 44579999999999975
Q ss_pred c
Q 011351 307 P 307 (488)
Q Consensus 307 p 307 (488)
.
T Consensus 164 s 164 (429)
T PRK10015 164 S 164 (429)
T ss_pred h
Confidence 4
No 377
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.51 E-value=0.0013 Score=66.04 Aligned_cols=106 Identities=28% Similarity=0.409 Sum_probs=73.8
Q ss_pred CeEEEECCCHHHHHHHHHHHhC---CCcEEEEecCC-c-------------Cccc---------c---------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPEN-H-------------LLQR---------L--------------- 246 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~---g~~v~lv~~~~-~-------------~l~~---------~--------------- 246 (488)
-+|+|||+|+.|+-+|..|++. |.+|+++++.. . +.+. .
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 83 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH 83 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence 4689999999999999999998 99999999831 1 0000 0
Q ss_pred -----------cC---------------HHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEE
Q 011351 247 -----------FT---------------PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 299 (488)
Q Consensus 247 -----------~~---------------~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~v 299 (488)
+. ..+.+.+.+.+.+ .|++++.+++++++...+ +.+ .+.+++|+++.+|.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~-~~~-~v~~~~g~~~~a~~v 161 (395)
T PRK05732 84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQ-GSV-RVTLDDGETLTGRLL 161 (395)
T ss_pred EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcC-CeE-EEEECCCCEEEeCEE
Confidence 00 0112233444444 479999999999997543 333 477788888999999
Q ss_pred EEeecCccCChhhhhcCC
Q 011351 300 VIGIGAKPTVSPFERVGL 317 (488)
Q Consensus 300 i~a~G~~p~~~~~~~~gl 317 (488)
|.|.|.... +.+.+++
T Consensus 162 I~AdG~~S~--vr~~~~~ 177 (395)
T PRK05732 162 VAADGSHSA--LREALGI 177 (395)
T ss_pred EEecCCChh--hHHhhCC
Confidence 999998764 3444444
No 378
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.50 E-value=0.0012 Score=66.07 Aligned_cols=106 Identities=25% Similarity=0.344 Sum_probs=73.7
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc-c-----------------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-R----------------------------------------- 245 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~-~----------------------------------------- 245 (488)
..|+|||+|+.|+-+|..|++.|.+|+++++.+.... +
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~~ 87 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRLI 87 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCCC
Confidence 4699999999999999999999999999998632100 0
Q ss_pred -----cc---------------CHHHHHHHHHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeec
Q 011351 246 -----LF---------------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 304 (488)
Q Consensus 246 -----~~---------------~~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G 304 (488)
.+ ...+.+.+.+.+.+. ++. ++++++++++..++ .+ .+.+++|+++.+|.||.|.|
T Consensus 88 ~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~-~~-~v~~~~g~~~~a~~vI~AdG 164 (388)
T PRK07494 88 RAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPRED-EV-TVTLADGTTLSARLVVGADG 164 (388)
T ss_pred CCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCC-eE-EEEECCCCEEEEeEEEEecC
Confidence 00 011233344445554 466 77999999976533 33 47788898999999999999
Q ss_pred CccCChhhhhcCCc
Q 011351 305 AKPTVSPFERVGLN 318 (488)
Q Consensus 305 ~~p~~~~~~~~gl~ 318 (488)
.... +-+.+++.
T Consensus 165 ~~S~--vr~~~g~~ 176 (388)
T PRK07494 165 RNSP--VREAAGIG 176 (388)
T ss_pred CCch--hHHhcCCC
Confidence 9763 33444443
No 379
>PRK06185 hypothetical protein; Provisional
Probab=97.48 E-value=0.0016 Score=65.77 Aligned_cols=109 Identities=25% Similarity=0.332 Sum_probs=74.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc-----------------------------------------
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------------- 245 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~----------------------------------------- 245 (488)
...|+|||+|+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR 85 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence 356999999999999999999999999999976321000
Q ss_pred ---c--c--------------CHHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEE--eCCCc-EEEcCEEEEe
Q 011351 246 ---L--F--------------TPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVK--LEDGS-TIDADTIVIG 302 (488)
Q Consensus 246 ---~--~--------------~~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~--l~~g~-~i~~D~vi~a 302 (488)
. + ...+.+.+.+.+++ .|++++.+++++++..+ ++.+..+. ..+|+ ++.+|.||.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~A 164 (407)
T PRK06185 86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVGA 164 (407)
T ss_pred EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEEC
Confidence 0 0 01122334444444 48999999999999865 44444343 34664 7999999999
Q ss_pred ecCccCChhhhhcCCc
Q 011351 303 IGAKPTVSPFERVGLN 318 (488)
Q Consensus 303 ~G~~p~~~~~~~~gl~ 318 (488)
.|.... +-+.+++.
T Consensus 165 dG~~S~--vr~~~gi~ 178 (407)
T PRK06185 165 DGRHSR--VRALAGLE 178 (407)
T ss_pred CCCchH--HHHHcCCC
Confidence 998753 33444544
No 380
>PLN02785 Protein HOTHEAD
Probab=97.48 E-value=0.0024 Score=67.08 Aligned_cols=62 Identities=15% Similarity=0.235 Sum_probs=42.9
Q ss_pred HHHHHHcCcEEEcCCeEEEEEeCCC---CcEEEEEeC--CCcEE-------EcCEEEEeecCccCChhhhhcCC
Q 011351 256 EQLYQQNGVKFVKGASIKNLEAGSD---GRVAAVKLE--DGSTI-------DADTIVIGIGAKPTVSPFERVGL 317 (488)
Q Consensus 256 ~~~l~~~GV~v~~~~~v~~i~~~~~---~~v~~v~l~--~g~~i-------~~D~vi~a~G~~p~~~~~~~~gl 317 (488)
.......++++.+++.|++|.-++. +++++|++. +|.+. ....||+|.|.-....+|..+|+
T Consensus 227 ~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGI 300 (587)
T PLN02785 227 LAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGI 300 (587)
T ss_pred HhhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCC
Confidence 3345567899999999999876532 367788874 45432 24689999998665566665554
No 381
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.00013 Score=72.85 Aligned_cols=37 Identities=19% Similarity=0.158 Sum_probs=33.8
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY 91 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~ 91 (488)
+||+|+|||+|||+||++|+++|+ +|||+|.++....
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~---~vt~~ea~~~~GG 37 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGY---DVTLYEARDRLGG 37 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCC---ceEEEeccCccCc
Confidence 489999999999999999999998 8999999987643
No 382
>PLN02568 polyamine oxidase
Probab=97.48 E-value=0.00014 Score=75.42 Aligned_cols=43 Identities=21% Similarity=0.173 Sum_probs=35.5
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCC--CCCcEEEEcCCCCCC
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGM--ADGRLCIVSKEAYAP 90 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~--~~~~V~lie~~~~~~ 90 (488)
+++.++|+|||||+|||+||..|.+.|. +..+|+|+|++....
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~G 46 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIG 46 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcC
Confidence 4556899999999999999999999871 123899999988753
No 383
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.46 E-value=0.00036 Score=74.71 Aligned_cols=92 Identities=21% Similarity=0.345 Sum_probs=67.2
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc--------cccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~--------~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 277 (488)
.+++|+|||+|+.|+..|..|++.|.+|+++++.+.+-. ..++.++.....+.+++.|++++.++.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 402 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK--- 402 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC---
Confidence 468999999999999999999999999999998765321 113455656566778889999999976521
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 278 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
+ +.+.+- ...+|.|++|+|....
T Consensus 403 --~-----i~~~~~-~~~~DavilAtGa~~~ 425 (654)
T PRK12769 403 --D-----ISLESL-LEDYDAVFVGVGTYRS 425 (654)
T ss_pred --c-----CCHHHH-HhcCCEEEEeCCCCCC
Confidence 0 111111 2469999999998643
No 384
>PLN02268 probable polyamine oxidase
Probab=97.44 E-value=0.00014 Score=74.04 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=33.3
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY 91 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~ 91 (488)
++|+|||||+|||+||+.|.+.|+ +|+|+|+++....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~---~v~vlEa~~r~GG 37 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASF---KVTLLESRDRIGG 37 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCCCCc
Confidence 479999999999999999999887 8999999987643
No 385
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.44 E-value=0.00032 Score=71.40 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=27.8
Q ss_pred EEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 56 IVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 56 IIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
|||+|.||++||.++++.|. +|+||||.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga---~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGA---SVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCCC---cEEEEeCCCC
Confidence 79999999999999999987 8999999874
No 386
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.42 E-value=0.0011 Score=67.15 Aligned_cols=98 Identities=16% Similarity=0.258 Sum_probs=68.1
Q ss_pred eEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCcCcccc----cCHH---------------------------------
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQRL----FTPS--------------------------------- 250 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g-~~v~lv~~~~~~l~~~----~~~~--------------------------------- 250 (488)
+|+|||+|+.|+-+|..|.+.| .+|+++++.+.+.... +.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6899999999999999999998 5999999874421100 0000
Q ss_pred --------------------H-HHHHHHHHHHc--CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351 251 --------------------L-AQRYEQLYQQN--GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 307 (488)
Q Consensus 251 --------------------~-~~~~~~~l~~~--GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p 307 (488)
+ ...+.+.|.+. ++.+++++++++++..+++ ..+.+++|+++.+|.||.|.|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEE--VQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCc--EEEEEcCCCEEEeeEEEECCCccH
Confidence 0 01112222221 4567889999999865443 367888999999999999999875
Q ss_pred C
Q 011351 308 T 308 (488)
Q Consensus 308 ~ 308 (488)
.
T Consensus 160 ~ 160 (414)
T TIGR03219 160 A 160 (414)
T ss_pred H
Confidence 3
No 387
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.42 E-value=0.00017 Score=71.37 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=31.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
+++|+|||||++|+.+|..|++.|+ +|+|+|+.+.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl---~V~LiE~rp~ 36 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGV---PVELYEMRPV 36 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC---cEEEEEccCc
Confidence 4699999999999999999999988 8999997654
No 388
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.41 E-value=0.0013 Score=66.07 Aligned_cols=94 Identities=17% Similarity=0.352 Sum_probs=67.7
Q ss_pred EEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc----------------------c----------------------
Q 011351 211 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------L---------------------- 246 (488)
Q Consensus 211 vVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~----------------------~---------------------- 246 (488)
+|||+|+.|+-+|..+++.|.+|+++++.+.+... .
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 58999999999999999999999988876432110 0
Q ss_pred ----------------------cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeec
Q 011351 247 ----------------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 304 (488)
Q Consensus 247 ----------------------~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G 304 (488)
....+.+.+.+.+++.|+++++++.+++++.. ++. ..+.+ +++++.+|.||+|+|
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~-~~v~~-~~~~i~ad~VIlAtG 157 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD-DNG-FGVET-SGGEYEADKVILATG 157 (400)
T ss_pred HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CCe-EEEEE-CCcEEEcCEEEECCC
Confidence 00123344556677889999999999999754 332 34555 456799999999999
Q ss_pred Ccc
Q 011351 305 AKP 307 (488)
Q Consensus 305 ~~p 307 (488)
...
T Consensus 158 ~~s 160 (400)
T TIGR00275 158 GLS 160 (400)
T ss_pred Ccc
Confidence 753
No 389
>PLN02576 protoporphyrinogen oxidase
Probab=97.39 E-value=0.00021 Score=74.21 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=34.4
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCCCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYAP 90 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~lie~~~~~~ 90 (488)
..+++|+|||||++||+||+.|.+. |. +|+|+|+++...
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~---~v~vlEa~~rvG 49 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGV---NVLVTEARDRVG 49 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCC---CEEEEecCCCCC
Confidence 3456899999999999999999998 77 899999998754
No 390
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.39 E-value=0.0034 Score=55.78 Aligned_cols=103 Identities=22% Similarity=0.263 Sum_probs=68.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc------c-------------------------------CH
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------F-------------------------------TP 249 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~------~-------------------------------~~ 249 (488)
...++|||+|++|+-+|..|++.|.+|.++++...+-... | ..
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~ 96 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV 96 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence 3569999999999999999999999999999874322110 0 01
Q ss_pred HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-----------CCcEEEcCEEEEeecCccCC
Q 011351 250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DGSTIDADTIVIGIGAKPTV 309 (488)
Q Consensus 250 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~-----------~g~~i~~D~vi~a~G~~p~~ 309 (488)
++...+....-+.|+++.....++.+--.+++++.++... |--.+.+..||-+||.....
T Consensus 97 ~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v 167 (230)
T PF01946_consen 97 EFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEV 167 (230)
T ss_dssp HHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSS
T ss_pred HHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHH
Confidence 1222333334458999999999999876555788888764 22379999999999998654
No 391
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.37 E-value=0.00024 Score=69.75 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=34.9
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 90 (488)
....+|||||||+|||+||.+|.++|+. +++|+|.++...
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~--~~~IlEa~dRIG 58 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFI--DVLILEASDRIG 58 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCc--eEEEEEeccccC
Confidence 3456999999999999999999998875 899999988653
No 392
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.37 E-value=0.0025 Score=65.06 Aligned_cols=64 Identities=14% Similarity=0.274 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC--CCc--EEEcCEEEEeecC-ccCChhhhh
Q 011351 251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS--TIDADTIVIGIGA-KPTVSPFER 314 (488)
Q Consensus 251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~--~g~--~i~~D~vi~a~G~-~p~~~~~~~ 314 (488)
+...+.+.+++.|+++++++.++++..++++++.++... +++ .+.++.||+|+|- ..|.++++.
T Consensus 132 l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~~~ 200 (439)
T TIGR01813 132 IVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMIAK 200 (439)
T ss_pred HHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHHHH
Confidence 334555667788999999999999987656777666553 343 4789999999994 455444443
No 393
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.37 E-value=0.00021 Score=74.02 Aligned_cols=59 Identities=17% Similarity=0.151 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC----cEEEcCEEEEeecCccC
Q 011351 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAKPT 308 (488)
Q Consensus 248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g----~~i~~D~vi~a~G~~p~ 308 (488)
+..+...+....++.|++++.++.|+++..+ ++ ...+.+.++ .++.++.||.|+|...+
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 154 DARLVVLNALDAAERGATILTRTRCVSARRE-GG-LWRVETRDADGETRTVRARALVNAAGPWVT 216 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEecCcEEEEEEEc-CC-EEEEEEEeCCCCEEEEEecEEEECCCccHH
Confidence 3455556667778899999999999999864 33 234555554 35899999999997654
No 394
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.36 E-value=0.0023 Score=71.75 Aligned_cols=101 Identities=20% Similarity=0.197 Sum_probs=69.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccccc----------CHHHHHHHHHHHHHc-CcEEEcCCeEEEE
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQN-GVKFVKGASIKNL 275 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~----------~~~~~~~~~~~l~~~-GV~v~~~~~v~~i 275 (488)
...|+|||+|+.|+..|..+++.|.+|++++..+.+-.... ..+....+.+.+++. +|+++.+++|..+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i 242 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY 242 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence 46799999999999999999999999999998765432111 112323344555555 5999999999887
Q ss_pred EeCCCCcEEEEE-eC-------CC------cEEEcCEEEEeecCccCC
Q 011351 276 EAGSDGRVAAVK-LE-------DG------STIDADTIVIGIGAKPTV 309 (488)
Q Consensus 276 ~~~~~~~v~~v~-l~-------~g------~~i~~D~vi~a~G~~p~~ 309 (488)
.. ++.+..+. .. ++ .++.+|.||+|||..+..
T Consensus 243 ~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~ 288 (985)
T TIGR01372 243 YD--HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP 288 (985)
T ss_pred ec--CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence 53 22221111 00 11 158999999999998753
No 395
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.35 E-value=0.00023 Score=73.74 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC---Cc--EEEcCEEEEeecCccC
Q 011351 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GS--TIDADTIVIGIGAKPT 308 (488)
Q Consensus 249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~---g~--~i~~D~vi~a~G~~p~ 308 (488)
..+...+.+..++.|++++.+++|+++..+ ++. ..+.+.+ |+ ++.++.||.|+|...+
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~-~~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILTRTRVVSARRE-NGL-WHVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-CCE-EEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 445555666678889999999999999754 333 2454443 43 6899999999998654
No 396
>PLN02985 squalene monooxygenase
Probab=97.35 E-value=0.00026 Score=73.29 Aligned_cols=38 Identities=18% Similarity=0.414 Sum_probs=33.9
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
.+.++||+|||||++|+++|..|++.|+ +|+|+|+.+.
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~---~V~vlEr~~~ 77 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGR---RVHVIERDLR 77 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCC---eEEEEECcCC
Confidence 4556899999999999999999999987 8999999753
No 397
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.35 E-value=0.0029 Score=54.48 Aligned_cols=41 Identities=29% Similarity=0.512 Sum_probs=32.0
Q ss_pred CcEEE-cCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC
Q 011351 263 GVKFV-KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 305 (488)
Q Consensus 263 GV~v~-~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~ 305 (488)
|+++. ...+|+.+...+++ ..+.+.+|..+.+|.||+|+|.
T Consensus 114 ~i~v~~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 114 GITVRHVRAEVVDIRRDDDG--YRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CcEEEEEeeEEEEEEEcCCc--EEEEECCCCEEEeCEEEECCCC
Confidence 55553 35588999876555 3678899999999999999996
No 398
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.33 E-value=0.0034 Score=63.03 Aligned_cols=101 Identities=17% Similarity=0.153 Sum_probs=71.2
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc--c----cc-----------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--Q----RL----------------------------------- 246 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l--~----~~----------------------------------- 246 (488)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+... . ..
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~ 82 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR 82 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence 469999999999999999999999999999775310 0 00
Q ss_pred -----c-------------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe-CCCc--EEEcCEEEEeecC
Q 011351 247 -----F-------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGA 305 (488)
Q Consensus 247 -----~-------------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l-~~g~--~i~~D~vi~a~G~ 305 (488)
+ .+.+.+.+.+...+.|+++++++++++++..++.. ..|.+ .+|+ ++.+|+||-|-|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~-~~V~~~~~G~~~~i~ad~vVgADG~ 161 (392)
T PRK08243 83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDR-PYVTYEKDGEEHRLDCDFIAGCDGF 161 (392)
T ss_pred EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCc-eEEEEEcCCeEEEEEeCEEEECCCC
Confidence 0 01122334444466799999999999987522222 24555 4664 6899999999998
Q ss_pred ccCC
Q 011351 306 KPTV 309 (488)
Q Consensus 306 ~p~~ 309 (488)
....
T Consensus 162 ~S~v 165 (392)
T PRK08243 162 HGVS 165 (392)
T ss_pred CCch
Confidence 7653
No 399
>PRK06126 hypothetical protein; Provisional
Probab=97.33 E-value=0.0027 Score=66.68 Aligned_cols=100 Identities=25% Similarity=0.366 Sum_probs=69.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc------------------------------------------
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------ 244 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~------------------------------------------ 244 (488)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+....
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR 86 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence 35799999999999999999999999999987621000
Q ss_pred -------c-----c----------------------cC-HHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEe
Q 011351 245 -------R-----L----------------------FT-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL 288 (488)
Q Consensus 245 -------~-----~----------------------~~-~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l 288 (488)
+ . .+ ..+.+.+.+.+++ .|+++++++++++++.++++ +. +.+
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v~-v~~ 164 (545)
T PRK06126 87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADG-VT-ATV 164 (545)
T ss_pred CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCe-EE-EEE
Confidence 0 0 00 0122233444444 48999999999999865433 32 333
Q ss_pred ---CCCc--EEEcCEEEEeecCccC
Q 011351 289 ---EDGS--TIDADTIVIGIGAKPT 308 (488)
Q Consensus 289 ---~~g~--~i~~D~vi~a~G~~p~ 308 (488)
.+|+ ++.+|+||.|.|....
T Consensus 165 ~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 165 EDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred EECCCCcEEEEEEEEEEecCCcchH
Confidence 3454 6899999999998653
No 400
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.33 E-value=0.00031 Score=75.34 Aligned_cols=39 Identities=28% Similarity=0.407 Sum_probs=34.7
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 90 (488)
...++|+|||||++|++||..|.+.|+ +|+|+|+++...
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~---~v~v~E~~~r~G 274 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGF---KVVVLEGRARPG 274 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCC---cEEEEeccccCC
Confidence 456899999999999999999999987 899999987653
No 401
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.32 E-value=0.00024 Score=74.82 Aligned_cols=36 Identities=17% Similarity=0.309 Sum_probs=32.8
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
.++.+|+|||||++|+++|..|++.|+ +|+|+|+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi---~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGF---DVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCC---eEEEEeccc
Confidence 345899999999999999999999998 899999975
No 402
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.30 E-value=0.0027 Score=63.26 Aligned_cols=96 Identities=23% Similarity=0.268 Sum_probs=69.5
Q ss_pred EEEECCCHHHHHHHHHH--HhCCCcEEEEecCCcC--ccc----------------------------------------
Q 011351 210 VVVVGGGYIGMEVAAAA--VGWKLDTTIIFPENHL--LQR---------------------------------------- 245 (488)
Q Consensus 210 vvVvG~G~~g~e~A~~l--~~~g~~v~lv~~~~~~--l~~---------------------------------------- 245 (488)
|+|||+|+.|+-+|..| ...|.+|.++++.+.. -..
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~Y 81 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYPY 81 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccce
Confidence 78999999999999999 7788999999876433 100
Q ss_pred --ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 246 --LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 246 --~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
.-...+.+.+.+.++..| .+..+++|++++..++ ...+.+++|+++.++.||-|.|..+.
T Consensus 82 ~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~--~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 82 CMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGD--GVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred EEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCc--eEEEEECCCCEEEeeEEEECCCcccc
Confidence 001123444555556444 5667789999986544 24678899999999999999996554
No 403
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.30 E-value=0.0003 Score=69.30 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=32.1
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 90 (488)
.||+|||||+||+++|..|++.|. +|+|+|+++...
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~---~V~viEk~~~iG 37 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNK---RVLVVEKRNHIG 37 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCCC
Confidence 689999999999999999998876 899999986543
No 404
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.002 Score=56.91 Aligned_cols=99 Identities=15% Similarity=0.264 Sum_probs=72.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEec--------------------CCcCcccccCHHHHHHHHHHHHHcCcEE
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP--------------------ENHLLQRLFTPSLAQRYEQLYQQNGVKF 266 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~--------------------~~~~l~~~~~~~~~~~~~~~l~~~GV~v 266 (488)
..+++|||+|+.+.-.|.++++...+..+++. -+.+.....++++.+.+++.-++.|-++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i 87 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI 87 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence 46899999999999999998877655554432 2344444567889999999999999999
Q ss_pred EcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351 267 VKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 309 (488)
Q Consensus 267 ~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~ 309 (488)
+.. .|.+++.. ++...+.+ |.+.+.+|.||++||.....
T Consensus 88 ~tE-tVskv~~s--skpF~l~t-d~~~v~~~avI~atGAsAkR 126 (322)
T KOG0404|consen 88 ITE-TVSKVDLS--SKPFKLWT-DARPVTADAVILATGASAKR 126 (322)
T ss_pred eee-ehhhcccc--CCCeEEEe-cCCceeeeeEEEecccceee
Confidence 876 47777632 33334444 55679999999999987653
No 405
>PRK06996 hypothetical protein; Provisional
Probab=97.30 E-value=0.0027 Score=63.93 Aligned_cols=99 Identities=19% Similarity=0.269 Sum_probs=72.4
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCC----CcEEEEecCCcCcc----c--------------------------------
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWK----LDTTIIFPENHLLQ----R-------------------------------- 245 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g----~~v~lv~~~~~~l~----~-------------------------------- 245 (488)
....|+|||+|+.|+-+|..|++.| .+|+++++.+..-. +
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~ 89 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQ 89 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEec
Confidence 3457999999999999999999886 46999987521000 0
Q ss_pred ---------------------cc-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC---cEEEcCEEE
Q 011351 246 ---------------------LF-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIV 300 (488)
Q Consensus 246 ---------------------~~-~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g---~~i~~D~vi 300 (488)
.. -..+.+.+.+.+++.|++++.++++++++...++ + .+.+.++ +++.+|+||
T Consensus 90 ~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~-v-~v~~~~~~g~~~i~a~lvI 167 (398)
T PRK06996 90 RGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG-V-TLALGTPQGARTLRARIAV 167 (398)
T ss_pred CCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe-E-EEEECCCCcceEEeeeEEE
Confidence 00 0234566777778889999999999999765433 2 4666654 589999999
Q ss_pred EeecCc
Q 011351 301 IGIGAK 306 (488)
Q Consensus 301 ~a~G~~ 306 (488)
-|-|..
T Consensus 168 gADG~~ 173 (398)
T PRK06996 168 QAEGGL 173 (398)
T ss_pred ECCCCC
Confidence 999964
No 406
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.29 E-value=0.0037 Score=62.30 Aligned_cols=52 Identities=25% Similarity=0.403 Sum_probs=38.5
Q ss_pred HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhh
Q 011351 258 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 313 (488)
Q Consensus 258 ~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~ 313 (488)
.+.+.|++++.+++|+++...+ +.+ .+.+++| ++.+|.||+|+|.... .++.
T Consensus 158 ~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~~g-~~~a~~vV~A~G~~~~-~l~~ 209 (376)
T PRK11259 158 LAREAGAELLFNEPVTAIEADG-DGV-TVTTADG-TYEAKKLVVSAGAWVK-DLLP 209 (376)
T ss_pred HHHHCCCEEECCCEEEEEEeeC-CeE-EEEeCCC-EEEeeEEEEecCcchh-hhcc
Confidence 3456789999999999998643 333 5777777 6999999999998643 3443
No 407
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.28 E-value=0.0004 Score=69.21 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=31.3
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~ 242 (488)
+|+|||+|..|+|+|..|++.|.+|+++++.+..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 6899999999999999999999999999977654
No 408
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.27 E-value=0.004 Score=63.48 Aligned_cols=101 Identities=23% Similarity=0.366 Sum_probs=72.1
Q ss_pred eEEEECCCHHHHHHHHHHHh----CCCcEEEEecCC--cCc------------ccc------------------------
Q 011351 209 KVVVVGGGYIGMEVAAAAVG----WKLDTTIIFPEN--HLL------------QRL------------------------ 246 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~----~g~~v~lv~~~~--~~l------------~~~------------------------ 246 (488)
.|+|||+|+.|+-+|..|++ .|.+|+++++.+ ... .+.
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~ 81 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDR 81 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhc
Confidence 48999999999999999998 799999999832 110 000
Q ss_pred -------------------cC--------------HHHHHHHHHHHHHcC---cEEEcCCeEEEEEeC-----CCCcEEE
Q 011351 247 -------------------FT--------------PSLAQRYEQLYQQNG---VKFVKGASIKNLEAG-----SDGRVAA 285 (488)
Q Consensus 247 -------------------~~--------------~~~~~~~~~~l~~~G---V~v~~~~~v~~i~~~-----~~~~v~~ 285 (488)
++ ..+...+.+.+++.+ +++++++++++++.. +++.-+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~ 161 (437)
T TIGR01989 82 IQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH 161 (437)
T ss_pred CCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE
Confidence 00 112333445556654 999999999999742 1222246
Q ss_pred EEeCCCcEEEcCEEEEeecCccCC
Q 011351 286 VKLEDGSTIDADTIVIGIGAKPTV 309 (488)
Q Consensus 286 v~l~~g~~i~~D~vi~a~G~~p~~ 309 (488)
+.+.+|+++.+|+||-|-|.....
T Consensus 162 v~~~~g~~i~a~llVgADG~~S~v 185 (437)
T TIGR01989 162 ITLSDGQVLYTKLLIGADGSNSNV 185 (437)
T ss_pred EEEcCCCEEEeeEEEEecCCCChh
Confidence 788999999999999999997643
No 409
>PRK13984 putative oxidoreductase; Provisional
Probab=97.27 E-value=0.00085 Score=71.32 Aligned_cols=91 Identities=19% Similarity=0.188 Sum_probs=66.9
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc--------cccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~--------~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 277 (488)
.+++++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. ..+..++.....+.+++.|++++.++.+..-
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~-- 359 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKD-- 359 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCCc--
Confidence 578899999999999999999999999999988765421 0123445455556788899999999776320
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351 278 GSDGRVAAVKLEDGSTIDADTIVIGIGAKP 307 (488)
Q Consensus 278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p 307 (488)
+.+++ ....+|.||+|+|..+
T Consensus 360 --------~~~~~-~~~~yD~vilAtGa~~ 380 (604)
T PRK13984 360 --------IPLEE-LREKHDAVFLSTGFTL 380 (604)
T ss_pred --------CCHHH-HHhcCCEEEEEcCcCC
Confidence 11111 1357999999999864
No 410
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.26 E-value=0.00032 Score=72.65 Aligned_cols=57 Identities=19% Similarity=0.392 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC-----cEEEcCEEEEeecC
Q 011351 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-----STIDADTIVIGIGA 305 (488)
Q Consensus 248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g-----~~i~~D~vi~a~G~ 305 (488)
...+.+.+.+.+++.|.+|++++.|++|..+ ++++..+.+.++ +++.+|.||+++..
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~ 292 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVANLPP 292 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEECCCH
Confidence 3467888888899999999999999999865 344456666554 57899999999775
No 411
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.26 E-value=0.00097 Score=70.23 Aligned_cols=92 Identities=22% Similarity=0.261 Sum_probs=65.7
Q ss_pred hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc--------cccCHHHHHHHHHHHHHcCcEEEcCCeE-EEE
Q 011351 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASI-KNL 275 (488)
Q Consensus 205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~--------~~~~~~~~~~~~~~l~~~GV~v~~~~~v-~~i 275 (488)
..+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. ..++.+..+.-.+.+++.|++++.++.+ ..+
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~ 214 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDI 214 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcC
Confidence 4678999999999999999999999999999987765421 1123344444455677899999988755 222
Q ss_pred EeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 276 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 276 ~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
... .+ ...+|.|++|+|..+.
T Consensus 215 ~~~--------~~----~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 215 TLE--------QL----EGEFDAVFVAIGAQLG 235 (564)
T ss_pred CHH--------HH----HhhCCEEEEeeCCCCC
Confidence 110 01 1248999999998754
No 412
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.23 E-value=0.00096 Score=64.94 Aligned_cols=55 Identities=15% Similarity=0.322 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeec
Q 011351 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 304 (488)
Q Consensus 249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G 304 (488)
..++..+.+-+++.|-++.+.++|++|.-+ ++++.+|.+.||+++.+..|+.-++
T Consensus 264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt 318 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNAT 318 (561)
T ss_pred hHHHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCc
Confidence 457788888899999999999999999865 5889999999999999977776554
No 413
>PTZ00367 squalene epoxidase; Provisional
Probab=97.23 E-value=0.00035 Score=72.88 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=33.0
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
+..+||+|||||++|+++|..|++.|+ +|+|+|+.+
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~G~---~V~VlEr~~ 66 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQGR---KVLMLERDL 66 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhcCC---EEEEEcccc
Confidence 456899999999999999999999987 899999875
No 414
>PRK07538 hypothetical protein; Provisional
Probab=97.22 E-value=0.004 Score=63.01 Aligned_cols=98 Identities=20% Similarity=0.248 Sum_probs=67.1
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc----------------------------------c-------
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL----------------------------------F------- 247 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~----------------------------------~------- 247 (488)
+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+.+.. +
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI 81 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence 58999999999999999999999999999874221100 0
Q ss_pred -------------------CHHHHHHHHHHHHH-cC-cEEEcCCeEEEEEeCCCCcEEEEEeCC-----CcEEEcCEEEE
Q 011351 248 -------------------TPSLAQRYEQLYQQ-NG-VKFVKGASIKNLEAGSDGRVAAVKLED-----GSTIDADTIVI 301 (488)
Q Consensus 248 -------------------~~~~~~~~~~~l~~-~G-V~v~~~~~v~~i~~~~~~~v~~v~l~~-----g~~i~~D~vi~ 301 (488)
-..+.+.+.+.+.+ .| +.+++++++++++.++++.+ +.+.+ ++++.+|+||-
T Consensus 82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~~adlvIg 159 (413)
T PRK07538 82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV--VFLGDRAGGDLVSVRGDVLIG 159 (413)
T ss_pred eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE--EEEeccCCCccceEEeeEEEE
Confidence 00112223333333 35 57999999999986655533 33333 24799999999
Q ss_pred eecCccC
Q 011351 302 GIGAKPT 308 (488)
Q Consensus 302 a~G~~p~ 308 (488)
|-|....
T Consensus 160 ADG~~S~ 166 (413)
T PRK07538 160 ADGIHSA 166 (413)
T ss_pred CCCCCHH
Confidence 9998653
No 415
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.20 E-value=0.0015 Score=64.44 Aligned_cols=85 Identities=20% Similarity=0.456 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHc-CcEEEcCCeEEEEEeCCCCcE-EEE-EeC--CCcEEEcCEEEEeecCccCChhhhhcCCcc--cCC
Q 011351 250 SLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRV-AAV-KLE--DGSTIDADTIVIGIGAKPTVSPFERVGLNS--SVG 322 (488)
Q Consensus 250 ~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~~~v-~~v-~l~--~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~--~~g 322 (488)
.+.+.+.+.+++. |++++++++|+.++..+++.- +.+ .+. +.+++.++.|+++.|-.. ..+++.+|+.- .-|
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~a-L~LLqksgi~e~~gyg 260 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGA-LPLLQKSGIPEGKGYG 260 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHh-HHHHHHcCChhhcccC
Confidence 4555566667666 999999999999998877732 122 122 335799999999999875 47888888853 234
Q ss_pred CEEeC-CCCCCCCC
Q 011351 323 GIQVD-GQFRTRMP 335 (488)
Q Consensus 323 ~i~vd-~~~~t~~~ 335 (488)
+.+|. ..+++..|
T Consensus 261 gfPVsG~fl~~~n~ 274 (488)
T PF06039_consen 261 GFPVSGQFLRCKNP 274 (488)
T ss_pred CCcccceEEecCCH
Confidence 45554 34555433
No 416
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.17 E-value=0.0012 Score=66.08 Aligned_cols=97 Identities=24% Similarity=0.397 Sum_probs=65.8
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC------------------------------------------cCccc
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN------------------------------------------HLLQR 245 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~------------------------------------------~~l~~ 245 (488)
-.|+|||||..|+|.|.+.++.|.++.++.... +++..
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~ 84 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS 84 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence 368999999999999999999999887765441 11111
Q ss_pred ccCHH------------HHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC
Q 011351 246 LFTPS------------LAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 305 (488)
Q Consensus 246 ~~~~~------------~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~ 305 (488)
.-+|. ....+++.++. .++.++.+ .|+.+...++.++.+|.+.+|..+.|+.||++||.
T Consensus 85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 11111 12233333333 46776655 35565543344688999999999999999999994
No 417
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.17 E-value=0.0041 Score=62.97 Aligned_cols=58 Identities=26% Similarity=0.426 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEeecCccC
Q 011351 250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAKPT 308 (488)
Q Consensus 250 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~---~g~--~i~~D~vi~a~G~~p~ 308 (488)
.+...+.+.+++.|+++++++.++++..+ +++|+++... +|+ ++.++.||+|+|-...
T Consensus 142 ~~~~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 142 ALIEALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 45667788889999999999999999874 6788888776 454 5789999999997664
No 418
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.16 E-value=0.00061 Score=64.89 Aligned_cols=99 Identities=15% Similarity=0.222 Sum_probs=71.7
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (488)
.-+++++|||||.-||..+.-..+.|- +||++|--+...- . . +. .+ ....+.
T Consensus 209 ~vPk~~~viG~G~IGLE~gsV~~rLGs---eVT~VEf~~~i~~---~------m--D~---Ei-----------sk~~qr 260 (506)
T KOG1335|consen 209 EVPKKLTVIGAGYIGLEMGSVWSRLGS---EVTVVEFLDQIGG---V------M--DG---EI-----------SKAFQR 260 (506)
T ss_pred hCcceEEEEcCceeeeehhhHHHhcCC---eEEEEEehhhhcc---c------c--CH---HH-----------HHHHHH
Confidence 446799999999999999999999886 9999995543210 0 0 00 00 122456
Q ss_pred HHHHCCCeEEeCCcEEEEeCCCc---EEEeCC---C--cEEEeccEEeccCCCCC
Q 011351 129 WYKEKGIEMIYQDPVTSIDIEKQ---TLITNS---G--KLLKYGSLIVATGCTAS 175 (488)
Q Consensus 129 ~~~~~~i~~~~~~~v~~id~~~~---~v~~~~---g--~~i~yd~lVlAtG~~~~ 175 (488)
.+.+.+++|.++++|+..++... .|.+++ + +++.+|.|++++|-+|.
T Consensus 261 ~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~ 315 (506)
T KOG1335|consen 261 VLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPF 315 (506)
T ss_pred HHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCccc
Confidence 67889999999999999987654 344433 2 46899999999997764
No 419
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.16 E-value=0.0023 Score=65.36 Aligned_cols=71 Identities=15% Similarity=0.282 Sum_probs=54.4
Q ss_pred cEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351 232 DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 307 (488)
Q Consensus 232 ~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p 307 (488)
.-.+..+.+..+. +..+-..+....++.|..++.++.|+++... +++..+|.+..|. +++..||-|+|+-.
T Consensus 173 ~g~Ly~P~DG~~D---P~~lC~ala~~A~~~GA~viE~cpV~~i~~~-~~~~~gVeT~~G~-iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 173 YGGLYSPGDGVMD---PAGLCQALARAASALGALVIENCPVTGLHVE-TDKFGGVETPHGS-IETECVVNAAGVWA 243 (856)
T ss_pred eeeeecCCCcccC---HHHHHHHHHHHHHhcCcEEEecCCcceEEee-cCCccceeccCcc-eecceEEechhHHH
Confidence 3456667765543 2345677778889999999999999999865 3444488888885 99999999999865
No 420
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.15 E-value=0.0096 Score=56.09 Aligned_cols=53 Identities=19% Similarity=0.259 Sum_probs=39.3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCC-CCcEEEEcCCCCCCCCCCCCCccccC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMA-DGRLCIVSKEAYAPYERPALTKGYLF 102 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~-~~~V~lie~~~~~~~~~~~l~~~~~~ 102 (488)
.+.+|||||||-.|.+.|..|+++-.. +.+|.++|+++...-....++-+.+.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~ 138 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGIC 138 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeeccee
Confidence 367999999999999999999875432 24899999998754444555544443
No 421
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.15 E-value=0.0056 Score=61.40 Aligned_cols=100 Identities=19% Similarity=0.227 Sum_probs=69.6
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc--c----ccc----------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--Q----RLF---------------------------------- 247 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l--~----~~~---------------------------------- 247 (488)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+... . ..+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ 82 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence 569999999999999999999999999999875310 0 000
Q ss_pred ------------------C-HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-CCc--EEEcCEEEEeecC
Q 011351 248 ------------------T-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDADTIVIGIGA 305 (488)
Q Consensus 248 ------------------~-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~-~g~--~i~~D~vi~a~G~ 305 (488)
. ..+...+.+.+.+.|+.++++.+++.+...++.. ..|.+. +|+ ++.+|+||-|-|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~-~~V~~~~~g~~~~i~adlvIGADG~ 161 (390)
T TIGR02360 83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDR-PYVTFERDGERHRLDCDFIAGCDGF 161 (390)
T ss_pred EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc-cEEEEEECCeEEEEEeCEEEECCCC
Confidence 0 1122334455566788898888877775422222 246664 775 6899999999998
Q ss_pred ccC
Q 011351 306 KPT 308 (488)
Q Consensus 306 ~p~ 308 (488)
...
T Consensus 162 ~S~ 164 (390)
T TIGR02360 162 HGV 164 (390)
T ss_pred chh
Confidence 764
No 422
>PF14721 AIF_C: Apoptosis-inducing factor, mitochondrion-associated, C-term; PDB: 3GD4_A 1GV4_A 3GD3_A 1M6I_A.
Probab=97.14 E-value=0.0017 Score=51.48 Aligned_cols=33 Identities=12% Similarity=0.273 Sum_probs=24.6
Q ss_pred CcEEEEEEECCEEEEEEeecCChHHhhHHHHHHh
Q 011351 422 PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLAR 455 (488)
Q Consensus 422 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 455 (488)
.|-++||+++++|+|+++ .+--..+...|++|+
T Consensus 99 ~kGVVfYLrd~~VvGill-WNvf~~~~~AR~ii~ 131 (133)
T PF14721_consen 99 GKGVVFYLRDDRVVGILL-WNVFNRMPIARKIIA 131 (133)
T ss_dssp SEEEEEEEETTEEEEEEE-ES--S-HHHHHHHHH
T ss_pred CceEEEEEcCCeEEEEEE-eeccCccHHHHHHhh
Confidence 356889999999999997 455567888888874
No 423
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.13 E-value=0.0054 Score=64.23 Aligned_cols=54 Identities=19% Similarity=0.226 Sum_probs=39.5
Q ss_pred HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC---CC--cEEEcCEEEEeecCccCChhhh
Q 011351 258 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DG--STIDADTIVIGIGAKPTVSPFE 313 (488)
Q Consensus 258 ~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~---~g--~~i~~D~vi~a~G~~p~~~~~~ 313 (488)
..++.|++++++++|+++... ++++.+|.+. ++ .++.+|.||.|+|.... .+.+
T Consensus 158 ~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~-~l~~ 216 (546)
T PRK11101 158 DAKEHGAQILTYHEVTGLIRE-GDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ-HIAE 216 (546)
T ss_pred HHHhCCCEEEeccEEEEEEEc-CCeEEEEEEEEcCCCcEEEEECCEEEECCChhHH-HHHH
Confidence 346789999999999999864 4566666652 23 36999999999997654 3444
No 424
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.13 E-value=0.00069 Score=63.01 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=29.1
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
.|||||+|.|||+|+..+...+- .|+|+|++.
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg---~V~llek~~ 42 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGG---IVILLEKAG 42 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCC---eEEEEeccC
Confidence 69999999999999999998764 699999987
No 425
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.09 E-value=0.0015 Score=70.09 Aligned_cols=94 Identities=22% Similarity=0.310 Sum_probs=71.9
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc--------cccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~--------~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 277 (488)
.+++|.|||+|+.|+-.|..|.+.|+.|++++|++++-. -.+|..+.++-.++|.+.||+|++|+.|-+-
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~-- 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH-- 1861 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc--
Confidence 578999999999999999999999999999999987532 1246667777778899999999998754221
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh
Q 011351 278 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 310 (488)
Q Consensus 278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~ 310 (488)
+. -|+-.-+.|.||+|+|..-..+
T Consensus 1862 --------vs-~d~l~~~~daiv~a~gst~prd 1885 (2142)
T KOG0399|consen 1862 --------VS-LDELKKENDAIVLATGSTTPRD 1885 (2142)
T ss_pred --------cc-HHHHhhccCeEEEEeCCCCCcC
Confidence 11 2332356799999999864433
No 426
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.09 E-value=0.00064 Score=66.69 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=35.6
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 90 (488)
++..+|+|||+|++||+||.+|.+.|+ +|+|+|..+...
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~---~v~ilEar~r~G 43 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGY---QVQILEARDRVG 43 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCc---EEEEEeccCCcC
Confidence 567899999999999999999999999 899999988754
No 427
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.09 E-value=0.0084 Score=60.26 Aligned_cols=99 Identities=19% Similarity=0.290 Sum_probs=64.9
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc---ccc---------------------------------------
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---QRL--------------------------------------- 246 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l---~~~--------------------------------------- 246 (488)
+|+|||+|+.|+-+|..|++.|.+|.++++.+... ...
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~ 81 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL 81 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence 58999999999999999999999999998763210 000
Q ss_pred --------cC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEeC-CCCcEEEEEe--CC-----C--cEEEcCEEEEeecCcc
Q 011351 247 --------FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAG-SDGRVAAVKL--ED-----G--STIDADTIVIGIGAKP 307 (488)
Q Consensus 247 --------~~-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~-~~~~v~~v~l--~~-----g--~~i~~D~vi~a~G~~p 307 (488)
++ ..+.+.+.+...+.|++++.++ +..+... ..+....+.+ .+ | .++.+|+||.|.|..+
T Consensus 82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence 00 1122334555677899998774 6666421 1122223332 22 3 3799999999999876
Q ss_pred C
Q 011351 308 T 308 (488)
Q Consensus 308 ~ 308 (488)
.
T Consensus 161 ~ 161 (398)
T TIGR02028 161 R 161 (398)
T ss_pred H
Confidence 3
No 428
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=97.07 E-value=0.0082 Score=56.56 Aligned_cols=62 Identities=23% Similarity=0.335 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEe-CCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhh
Q 011351 251 LAQRYEQLYQQNGVKFVKGASIKNLEA-GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 313 (488)
Q Consensus 251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~-~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~ 313 (488)
..+.++..+++.|+.++.+..++.+.- ++++..+.|.+.+|..+.++.+|+++|.--+ .++.
T Consensus 155 slk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~-klL~ 217 (399)
T KOG2820|consen 155 SLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWIN-KLLP 217 (399)
T ss_pred HHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHH-hhcC
Confidence 345677788999999999999888762 2345566899999999999999999998765 4444
No 429
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.06 E-value=0.0077 Score=60.34 Aligned_cols=104 Identities=21% Similarity=0.369 Sum_probs=69.5
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecC-CcCc-----------c---------------------c----------
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHLL-----------Q---------------------R---------- 245 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~-~~~l-----------~---------------------~---------- 245 (488)
.|+|||+|+.|+-+|..|++.|.+|.++++. +... . .
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS 81 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence 4899999999999999999999999999876 2100 0 0
Q ss_pred ---c---cC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC------C--cEEEcCEEEEeecCccCCh
Q 011351 246 ---L---FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED------G--STIDADTIVIGIGAKPTVS 310 (488)
Q Consensus 246 ---~---~~-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~------g--~~i~~D~vi~a~G~~p~~~ 310 (488)
. ++ ..+.+.+.+...+.|++++.+ +++++..+++ .+ .+.+.+ | .++.+|+||.|.|....
T Consensus 82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~-~~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~-- 156 (388)
T TIGR02023 82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRD-GV-TLTYRTPKKGAGGEKGSVEADVVIGADGANSP-- 156 (388)
T ss_pred CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCC-eE-EEEEEeccccCCCcceEEEeCEEEECCCCCcH--
Confidence 0 00 012234555567779999765 5888876533 33 344442 2 36999999999998653
Q ss_pred hhhhcCC
Q 011351 311 PFERVGL 317 (488)
Q Consensus 311 ~~~~~gl 317 (488)
+.+.+++
T Consensus 157 v~r~lg~ 163 (388)
T TIGR02023 157 VAKELGL 163 (388)
T ss_pred HHHHcCC
Confidence 3344444
No 430
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.05 E-value=0.00068 Score=70.21 Aligned_cols=57 Identities=23% Similarity=0.284 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 306 (488)
Q Consensus 249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~ 306 (488)
..+.+.+.+.+++.|++|++++.|++|..+ ++++.+|.+.+|+++.+|.||+++|..
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~g~~~~ad~vV~a~~~~ 285 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILE-NGKAVGVKLADGEKIYAKRIVSNATRW 285 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEec-CCcEEEEEeCCCCEEEcCEEEECCChH
Confidence 457778888899999999999999999864 567778999999999999999998854
No 431
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.05 E-value=0.0071 Score=63.30 Aligned_cols=55 Identities=22% Similarity=0.378 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-------CC-cEEEcCEEEEeecC
Q 011351 251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-------DG-STIDADTIVIGIGA 305 (488)
Q Consensus 251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~-------~g-~~i~~D~vi~a~G~ 305 (488)
+...+.+.+++.||+++.++.++++..++++++.++... ++ ..+.++.||+|+|-
T Consensus 146 i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG 208 (541)
T PRK07804 146 VQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG 208 (541)
T ss_pred HHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence 444555666777899999999999976545677776553 23 36899999999985
No 432
>PRK11445 putative oxidoreductase; Provisional
Probab=97.04 E-value=0.011 Score=58.39 Aligned_cols=96 Identities=21% Similarity=0.245 Sum_probs=66.4
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc--------ccccCHH------------------------------
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------QRLFTPS------------------------------ 250 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l--------~~~~~~~------------------------------ 250 (488)
.|+|||+|+.|+-+|..|++. .+|+++++.+.+. ...+.+.
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~ 81 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL 81 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence 589999999999999999998 9999999775320 0000000
Q ss_pred -------------------HHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe-CCCc--EEEcCEEEEeecCccC
Q 011351 251 -------------------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGAKPT 308 (488)
Q Consensus 251 -------------------~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l-~~g~--~i~~D~vi~a~G~~p~ 308 (488)
+.+.+.+ ..+.|++++.++.++.++..+++ + .+.+ .+|+ ++.+|.||.|.|....
T Consensus 82 ~~~~~~~~~~~~~~i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~~~-~-~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 82 ANSLTRNYQRSYINIDRHKFDLWLKS-LIPASVEVYHNSLCRKIWREDDG-Y-HVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred cccchhhcCCCcccccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcCCE-E-EEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 0111112 23468999999999999865443 2 3443 5664 6899999999998754
No 433
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.03 E-value=0.0016 Score=70.68 Aligned_cols=35 Identities=17% Similarity=0.101 Sum_probs=32.5
Q ss_pred hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (488)
Q Consensus 205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~ 239 (488)
..+++|+|||+|+.|+.+|..|+..|.+|+++++.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 36789999999999999999999999999999975
No 434
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.01 E-value=0.00093 Score=64.69 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=35.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 90 (488)
..++|+|+|||++||++|++|++.+. +..|+|+|+.+...
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p-~~~i~l~Ea~~RvG 49 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGP-DVTITLFEASPRVG 49 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCC-CceEEEEecCCccc
Confidence 45799999999999999999999986 67799999998764
No 435
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.01 E-value=0.0074 Score=59.92 Aligned_cols=47 Identities=23% Similarity=0.454 Sum_probs=34.8
Q ss_pred HHHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 255 YEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 255 ~~~~l~~~-GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
+.+.+.+. |++++.++.|++++.. .|.+.+|+ +.+|.||+|+|...+
T Consensus 151 l~~~~~~~~Gv~i~~~t~V~~i~~~------~v~t~~g~-i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 151 LAAYLAEQHGVEFHWNTAVTSVETG------TVRTSRGD-VHADQVFVCPGADFE 198 (365)
T ss_pred HHHHHHhcCCCEEEeCCeEEEEecC------eEEeCCCc-EEeCEEEECCCCChh
Confidence 33444554 9999999999998632 46677775 789999999998653
No 436
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.00 E-value=0.00085 Score=64.94 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=32.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
+.+|+|||||++|+++|..|.+.|+ +|+|+|+...
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~---~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGI---DVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCC---eEEEEeeccc
Confidence 5789999999999999999999999 8999999654
No 437
>PLN02676 polyamine oxidase
Probab=96.98 E-value=0.0011 Score=68.33 Aligned_cols=41 Identities=27% Similarity=0.368 Sum_probs=34.9
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 90 (488)
...+++|+|||||++||+||++|++.|.. +|+|+|+++...
T Consensus 23 ~~~~~~v~IIGaG~sGL~aa~~L~~~g~~--~v~vlE~~~~~G 63 (487)
T PLN02676 23 AKPSPSVIIVGAGMSGISAAKTLSEAGIE--DILILEATDRIG 63 (487)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHHcCCC--cEEEecCCCCCC
Confidence 34568999999999999999999999862 699999987653
No 438
>PRK08401 L-aspartate oxidase; Provisional
Probab=96.98 E-value=0.0093 Score=61.24 Aligned_cols=96 Identities=29% Similarity=0.392 Sum_probs=67.1
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc-------------------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------- 244 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~------------------------------------------- 244 (488)
..|+|||+|..|+-.|..+++.|.+|.+++..+..-.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4689999999999999999999999999876421000
Q ss_pred ----------------------------c------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC
Q 011351 245 ----------------------------R------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 290 (488)
Q Consensus 245 ----------------------------~------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~ 290 (488)
+ .....+.+.+.+.+++.||+++.+ .++.+.. +++++.++.. +
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~ 158 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-D 158 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-C
Confidence 0 001123444555566778888775 6777764 3566666665 5
Q ss_pred CcEEEcCEEEEeecCc
Q 011351 291 GSTIDADTIVIGIGAK 306 (488)
Q Consensus 291 g~~i~~D~vi~a~G~~ 306 (488)
++.+.++.||+|||-.
T Consensus 159 g~~i~a~~VVLATGG~ 174 (466)
T PRK08401 159 GELLKFDATVIATGGF 174 (466)
T ss_pred CEEEEeCeEEECCCcC
Confidence 6679999999999953
No 439
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.95 E-value=0.0029 Score=59.25 Aligned_cols=35 Identities=29% Similarity=0.456 Sum_probs=32.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
...+|+|||+|.|||.||.+|+..|. +|+|+|++.
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~---~V~ildQEg 38 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGK---RVLILDQEG 38 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCc---eEEEEcccc
Confidence 46799999999999999999999998 899999987
No 440
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=96.94 E-value=0.0099 Score=60.49 Aligned_cols=64 Identities=14% Similarity=0.198 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEeCC-CCcEEEEEeCC-CcEEEcCEEEEeec-CccCChhhhh
Q 011351 251 LAQRYEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKLED-GSTIDADTIVIGIG-AKPTVSPFER 314 (488)
Q Consensus 251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~-~~~v~~v~l~~-g~~i~~D~vi~a~G-~~p~~~~~~~ 314 (488)
+.+.+.+.+++.|+++++++.++++..++ ++++.++...+ +.++.++.||+|+| +..|.+++++
T Consensus 125 l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~~ 191 (432)
T TIGR02485 125 LTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLRK 191 (432)
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHHh
Confidence 44556666788899999999999998653 46676666543 35799999999999 4555555544
No 441
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.92 E-value=0.0049 Score=63.95 Aligned_cols=103 Identities=20% Similarity=0.439 Sum_probs=76.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHhC---CCcEEEEecCCcC------cccccCH-----HHHHHHHHHHHHcCcEEEcCCeE
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHL------LQRLFTP-----SLAQRYEQLYQQNGVKFVKGASI 272 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~---g~~v~lv~~~~~~------l~~~~~~-----~~~~~~~~~l~~~GV~v~~~~~v 272 (488)
..+++|||.|..|..+..++.+. -.++|++...+++ +.+.+.+ ++.-.-..+.+++||+++.+.++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 35799999999999998888874 3468887655432 1222222 23333457789999999999999
Q ss_pred EEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhh
Q 011351 273 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 313 (488)
Q Consensus 273 ~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~ 313 (488)
..+..+ .+ .|+.++|.++.+|-+|+|||..|......
T Consensus 83 ~~idr~--~k--~V~t~~g~~~~YDkLilATGS~pfi~PiP 119 (793)
T COG1251 83 IQIDRA--NK--VVTTDAGRTVSYDKLIIATGSYPFILPIP 119 (793)
T ss_pred EEeccC--cc--eEEccCCcEeecceeEEecCccccccCCC
Confidence 999854 22 57889999999999999999999765433
No 442
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=96.90 E-value=0.0011 Score=69.67 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=32.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
.+.||||||+|.|||+||.++++.|. +|+||||.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~---~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGK---RVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCC
Confidence 46899999999999999999999987 899999987
No 443
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.90 E-value=0.014 Score=58.51 Aligned_cols=87 Identities=14% Similarity=0.186 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhCCCcE------EEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCC--C-CcEEEEE
Q 011351 217 YIGMEVAAAAVGWKLDT------TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--D-GRVAAVK 287 (488)
Q Consensus 217 ~~g~e~A~~l~~~g~~v------~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~--~-~~v~~v~ 287 (488)
.+++|+-.+|.+.-.++ .-+.+... . .-+.+...+.+.|+++||+|.++++|+.++-+. + ..+..+.
T Consensus 173 hSa~E~rRyl~Rf~h~~~~l~~l~~l~~T~Y---N-QyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~ 248 (500)
T PF06100_consen 173 HSAVEFRRYLHRFIHEIPGLNDLSGLDRTKY---N-QYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIH 248 (500)
T ss_pred hhHHHHHHHHHHHHHhcCCCCCccccccCcc---c-cHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEE
Confidence 46778877776652222 11212111 1 124677788999999999999999999987532 2 2233444
Q ss_pred e-CCCc--EE---EcCEEEEeecCcc
Q 011351 288 L-EDGS--TI---DADTIVIGIGAKP 307 (488)
Q Consensus 288 l-~~g~--~i---~~D~vi~a~G~~p 307 (488)
+ .+|+ ++ +-|+|++..|..-
T Consensus 249 ~~~~g~~~~i~l~~~DlV~vT~GS~t 274 (500)
T PF06100_consen 249 IEQDGKEETIDLGPDDLVFVTNGSMT 274 (500)
T ss_pred EEcCCCeeEEEeCCCCEEEEECCccc
Confidence 3 3443 22 4789999888643
No 444
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.89 E-value=0.0011 Score=66.08 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=31.0
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
.+|+|||||.||+.+|..|++.|. +|+|+|+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~---~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGV---PVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC---cEEEEecccc
Confidence 379999999999999999999988 8999997654
No 445
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=96.84 E-value=0.0012 Score=68.51 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=32.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 89 (488)
.+.||||||+| ||++||.++++.|. +|+||||.+..
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~---~V~vlEk~~~~ 41 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGL---SVALVEATDKF 41 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCC---cEEEEecCCCC
Confidence 46899999999 99999999999987 89999998753
No 446
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=96.82 E-value=0.015 Score=61.40 Aligned_cols=51 Identities=25% Similarity=0.328 Sum_probs=38.2
Q ss_pred HHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeecCc
Q 011351 255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 306 (488)
Q Consensus 255 ~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~--~i~~D~vi~a~G~~ 306 (488)
+.+.+++.||+++.++.++++..+ ++++.++.. .+|+ .+.++.||+|+|-.
T Consensus 135 L~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~ 190 (566)
T TIGR01812 135 LYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGY 190 (566)
T ss_pred HHHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence 344456679999999999998754 577766653 4564 58999999999954
No 447
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.80 E-value=0.0013 Score=71.71 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=30.7
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
.+|+|||||+||+++|..|++.+. ..+|+|+|+.+.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~-G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDP-AHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCC-CCeEEEEecCCC
Confidence 379999999999999999999831 238999999874
No 448
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.80 E-value=0.0082 Score=58.38 Aligned_cols=103 Identities=24% Similarity=0.380 Sum_probs=70.4
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccccc----------CHHHHHHHHHHHHHc--CcEEEcCCeEE
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQN--GVKFVKGASIK 273 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~----------~~~~~~~~~~~l~~~--GV~v~~~~~v~ 273 (488)
+.|+|+|+|+|..|+-+...|-..-.+|++|.+++.++-..+ -..+.+.+....++. +++++. +.-.
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~e-Aec~ 132 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLE-AECT 132 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEe-cccE
Confidence 568999999999999999988888889999999876543222 234566666666655 455543 3445
Q ss_pred EEEeCCCCcEE-EEEeCCC----cEEEcCEEEEeecCccCCh
Q 011351 274 NLEAGSDGRVA-AVKLEDG----STIDADTIVIGIGAKPTVS 310 (488)
Q Consensus 274 ~i~~~~~~~v~-~v~l~~g----~~i~~D~vi~a~G~~p~~~ 310 (488)
.++++ ..++. ...++++ ..+.+|++|+|+|..+++-
T Consensus 133 ~iDp~-~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TF 173 (491)
T KOG2495|consen 133 KIDPD-NKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTF 173 (491)
T ss_pred eeccc-ccEEEEeeeccCCCcceeeecccEEEEeccCCCCCC
Confidence 55543 22221 2233444 3689999999999998863
No 449
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=96.79 E-value=0.001 Score=63.89 Aligned_cols=67 Identities=19% Similarity=0.357 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEe-CCCCcEEEEEeCC--Cc----EEEcCEEEEeecCccCChhhhhcCC
Q 011351 251 LAQRYEQLYQQNGVKFVKGASIKNLEA-GSDGRVAAVKLED--GS----TIDADTIVIGIGAKPTVSPFERVGL 317 (488)
Q Consensus 251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~-~~~~~v~~v~l~~--g~----~i~~D~vi~a~G~~p~~~~~~~~gl 317 (488)
...++...++..|+++++++.|++|.. .+++++++|.+.+ +. .+.++.||+|.|.--...+|..+|+
T Consensus 195 ~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi 268 (296)
T PF00732_consen 195 ATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI 268 (296)
T ss_dssp HHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred hhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence 345566666666999999999999944 2466777776643 33 4678999999998666577777777
No 450
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.79 E-value=0.019 Score=58.59 Aligned_cols=106 Identities=19% Similarity=0.281 Sum_probs=68.6
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc---ccc--------------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---QRL-------------------------------------- 246 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l---~~~-------------------------------------- 246 (488)
-.|+|||+|+.|.-+|..|++.|.+|.++++..... ...
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~~ 119 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGKT 119 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEeccc
Confidence 469999999999999999999999999998763210 000
Q ss_pred ---------cC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCC--CCcEEEEEeCC-------C--cEEEcCEEEEeecC
Q 011351 247 ---------FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--DGRVAAVKLED-------G--STIDADTIVIGIGA 305 (488)
Q Consensus 247 ---------~~-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~--~~~v~~v~l~~-------g--~~i~~D~vi~a~G~ 305 (488)
++ ..+.+.+.+..++.|++++.+ .+++++... ++.+ .+.+.+ | .++.+|+||-|.|.
T Consensus 120 ~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~-~v~~~~~~~~~~~g~~~~v~a~~VIgADG~ 197 (450)
T PLN00093 120 LKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPY-VIHYTSYDSGSGAGTPKTLEVDAVIGADGA 197 (450)
T ss_pred CCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcE-EEEEEeccccccCCCccEEEeCEEEEcCCc
Confidence 00 012234555567789999876 476775321 2222 344321 3 47999999999998
Q ss_pred ccCChhhhhcCC
Q 011351 306 KPTVSPFERVGL 317 (488)
Q Consensus 306 ~p~~~~~~~~gl 317 (488)
.. .+.+.+++
T Consensus 198 ~S--~vrr~lg~ 207 (450)
T PLN00093 198 NS--RVAKDIDA 207 (450)
T ss_pred ch--HHHHHhCC
Confidence 65 33444443
No 451
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.77 E-value=0.018 Score=60.96 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeecCc
Q 011351 253 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 306 (488)
Q Consensus 253 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~--~i~~D~vi~a~G~~ 306 (488)
..+.+.+++.||+++.++.++++..++++++.++.. .+|+ .+.++.||+|||--
T Consensus 153 ~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 211 (598)
T PRK09078 153 HTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGY 211 (598)
T ss_pred HHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 344555667899999999999987654577887764 3564 67899999999954
No 452
>PRK08275 putative oxidoreductase; Provisional
Probab=96.77 E-value=0.021 Score=60.04 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeecCcc
Q 011351 252 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP 307 (488)
Q Consensus 252 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~--~i~~D~vi~a~G~~p 307 (488)
.+.+.+.+++.||+++.++.++++..++++++.++.. .+|+ .+.++.||+|||-..
T Consensus 140 ~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 140 KKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 3455555677899999999999998654567776653 3564 478999999999753
No 453
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=96.76 E-value=0.002 Score=60.11 Aligned_cols=38 Identities=26% Similarity=0.312 Sum_probs=34.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY 91 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~ 91 (488)
++|++|||+|.+|+..|..|++.|. +|.|||+.++...
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk---~VLIvekR~HIGG 38 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGK---RVLIVEKRNHIGG 38 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCC---EEEEEeccccCCC
Confidence 4789999999999999999999887 8999999988653
No 454
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.76 E-value=0.017 Score=61.28 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=34.7
Q ss_pred cCcEEEcCCeEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEeecC
Q 011351 262 NGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGA 305 (488)
Q Consensus 262 ~GV~v~~~~~v~~i~~~~~~~v~~v~l~---~g~--~i~~D~vi~a~G~ 305 (488)
.||+++.++.++++..++++++.+|... +|+ .+.++.||+|||-
T Consensus 146 ~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG 194 (603)
T TIGR01811 146 GLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGG 194 (603)
T ss_pred CCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 3799999999999876555678787653 453 5789999999986
No 455
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=96.73 E-value=0.021 Score=60.65 Aligned_cols=53 Identities=25% Similarity=0.232 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeecC
Q 011351 253 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGA 305 (488)
Q Consensus 253 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~--~i~~D~vi~a~G~ 305 (488)
..+.+..++.||+++.++.++++..++++++.++.. .+|+ .+.++.||+|||-
T Consensus 170 ~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 227 (617)
T PTZ00139 170 HTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGG 227 (617)
T ss_pred HHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCC
Confidence 444455566789999999999977544677877754 3564 5789999999974
No 456
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.69 E-value=0.0062 Score=59.86 Aligned_cols=32 Identities=41% Similarity=0.498 Sum_probs=28.2
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~ 239 (488)
-.|+|||||..|+|.|.+.++.|.+.+++..+
T Consensus 29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred ccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 46999999999999999999999888777654
No 457
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.67 E-value=0.002 Score=67.87 Aligned_cols=67 Identities=21% Similarity=0.320 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-CCc--EEEcC-EEEEeec-CccCChhhhh
Q 011351 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDAD-TIVIGIG-AKPTVSPFER 314 (488)
Q Consensus 248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~-~g~--~i~~D-~vi~a~G-~~p~~~~~~~ 314 (488)
...+...+.+..++.|++|++++.++++..+++++|++|... +|+ .+.++ .||+|+| +..|.+++++
T Consensus 212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~~ 283 (584)
T PRK12835 212 GQSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRKE 283 (584)
T ss_pred cHHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHHH
Confidence 345556667777888999999999999887656778777553 333 36676 4777765 4445455544
No 458
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.62 E-value=0.0028 Score=62.21 Aligned_cols=36 Identities=25% Similarity=0.430 Sum_probs=31.0
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
..+++|||||||.||..||.+.++.|. +-+|+..+-
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga---~TlLlT~~l 61 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGA---RTLLLTHNL 61 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCC---ceEEeeccc
Confidence 457999999999999999999999986 677777654
No 459
>PRK02106 choline dehydrogenase; Validated
Probab=96.61 E-value=0.0025 Score=67.14 Aligned_cols=65 Identities=14% Similarity=0.222 Sum_probs=47.7
Q ss_pred HHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC--c--EEEcCEEEEeecCccCChhhhhcCCcc
Q 011351 254 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--S--TIDADTIVIGIGAKPTVSPFERVGLNS 319 (488)
Q Consensus 254 ~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g--~--~i~~D~vi~a~G~~p~~~~~~~~gl~~ 319 (488)
++....+..+++++.++.|++|.-+ ++++++|+..+. + .+.++.||+|.|.--...+|..+|+-.
T Consensus 206 ~l~~a~~~~nl~i~~~a~V~rI~~~-~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~ 274 (560)
T PRK02106 206 YLDPALKRPNLTIVTHALTDRILFE-GKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGP 274 (560)
T ss_pred hhccccCCCCcEEEcCCEEEEEEEe-CCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCCC
Confidence 3444445678999999999999865 566778776443 2 468999999999876667777777643
No 460
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=96.61 E-value=0.0088 Score=54.67 Aligned_cols=100 Identities=18% Similarity=0.286 Sum_probs=67.4
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc------------------------------------------
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------------------------------------------ 246 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~------------------------------------------ 246 (488)
+|+|||+|..|+-+|..|+..|.+|++++++..+-.|.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 58999999999999999999999999999872211110
Q ss_pred -------------------c-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC-cEEEcCEEEEeecC
Q 011351 247 -------------------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGA 305 (488)
Q Consensus 247 -------------------~-~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g-~~i~~D~vi~a~G~ 305 (488)
. .+.++ .+.+.|. ...+++++++|+++...++ .-.+..++| +...+|.|++++..
T Consensus 83 ~~~~~~~~~~~~~~d~~pyvg~pgms-alak~LA-tdL~V~~~~rVt~v~~~~~--~W~l~~~~g~~~~~~d~vvla~PA 158 (331)
T COG3380 83 AVWTFTGDGSPPRGDEDPYVGEPGMS-ALAKFLA-TDLTVVLETRVTEVARTDN--DWTLHTDDGTRHTQFDDVVLAIPA 158 (331)
T ss_pred cccccccCCCCCCCCCCccccCcchH-HHHHHHh-ccchhhhhhhhhhheecCC--eeEEEecCCCcccccceEEEecCC
Confidence 0 01112 2223332 2467888888888876522 236777665 46789999999876
Q ss_pred ccCChhh
Q 011351 306 KPTVSPF 312 (488)
Q Consensus 306 ~p~~~~~ 312 (488)
-....++
T Consensus 159 PQ~~~LL 165 (331)
T COG3380 159 PQTATLL 165 (331)
T ss_pred Ccchhhc
Confidence 5444444
No 461
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.61 E-value=0.0025 Score=66.91 Aligned_cols=65 Identities=23% Similarity=0.304 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-CCc--EEEc-CEEEEeecC-ccCChhhh
Q 011351 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDA-DTIVIGIGA-KPTVSPFE 313 (488)
Q Consensus 248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~-~g~--~i~~-D~vi~a~G~-~p~~~~~~ 313 (488)
+..+...+.+.+++.|+++++++.++++..+ +++|.+|... +|+ .+.+ +.||+|+|- ..|.++++
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N~em~~ 276 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWTNTPLTELIVE-DGRVVGVVVVRDGREVLIRARRGVLLASGGFGHNAEMRK 276 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEEEECCeEEEEEecceEEEecCCccCCHHHHH
Confidence 4566677777788889999999999998854 5777776553 343 4667 467777764 34444443
No 462
>PRK12839 hypothetical protein; Provisional
Probab=96.60 E-value=0.0026 Score=66.80 Aligned_cols=66 Identities=26% Similarity=0.399 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC--CCc-E-EEcCEEEEeecCcc-CChhhh
Q 011351 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS-T-IDADTIVIGIGAKP-TVSPFE 313 (488)
Q Consensus 248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~--~g~-~-i~~D~vi~a~G~~p-~~~~~~ 313 (488)
+..+...+.+..++.|++++.++.++++..++++++.+|... +|+ . +.++.||+|+|--. |.++++
T Consensus 213 g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~~~~ 283 (572)
T PRK12839 213 GTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVDRRK 283 (572)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHHHHH
Confidence 445666777778889999999999999976556788887653 444 2 34588999986543 444433
No 463
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.59 E-value=0.03 Score=59.17 Aligned_cols=54 Identities=20% Similarity=0.220 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeecCc
Q 011351 253 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 306 (488)
Q Consensus 253 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~--~i~~D~vi~a~G~~ 306 (488)
..+.+...+.||+++.++.++++..++++++.++.. .+|+ .+.++.||+|||--
T Consensus 147 ~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 205 (588)
T PRK08958 147 HTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGA 205 (588)
T ss_pred HHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCc
Confidence 334444556789999999999987655678887764 3554 57899999999953
No 464
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.57 E-value=0.024 Score=59.74 Aligned_cols=52 Identities=12% Similarity=0.106 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEeecC
Q 011351 253 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGA 305 (488)
Q Consensus 253 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~---~g~--~i~~D~vi~a~G~ 305 (488)
..+.+.+++.||+++.++.++++..+ ++++.++... +|+ .+.++.||+|||-
T Consensus 140 ~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 196 (566)
T PRK06452 140 HTLFERTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVVLATGG 196 (566)
T ss_pred HHHHHHHHhCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence 34445556678999999999998864 6788887654 333 5789999999993
No 465
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.56 E-value=0.028 Score=60.01 Aligned_cols=49 Identities=22% Similarity=0.354 Sum_probs=38.0
Q ss_pred HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEeecC
Q 011351 256 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGA 305 (488)
Q Consensus 256 ~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~---~g~--~i~~D~vi~a~G~ 305 (488)
.+.+++.||++++++.++++..+ ++++.+|... +|+ .+.++.||+|||-
T Consensus 177 ~~~~~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 177 SRQIAAGTVKMYTRTEMLDLVVV-DGRARGIVARNLVTGEIERHTADAVVLATGG 230 (640)
T ss_pred HHHHHhcCCEEEeceEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 33456789999999999998754 5777777654 454 5899999999996
No 466
>PRK06175 L-aspartate oxidase; Provisional
Probab=96.55 E-value=0.028 Score=57.08 Aligned_cols=55 Identities=9% Similarity=0.234 Sum_probs=39.1
Q ss_pred HHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEE-eCCCc--EEEcCEEEEeecCc
Q 011351 251 LAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVK-LEDGS--TIDADTIVIGIGAK 306 (488)
Q Consensus 251 ~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~-l~~g~--~i~~D~vi~a~G~~ 306 (488)
+.+.+.+.+++ .||++++++.++++..+ ++++.++. ..+++ .+.++.||+|+|--
T Consensus 130 l~~~L~~~~~~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~ 188 (433)
T PRK06175 130 VEKILLKKVKKRKNITIIENCYLVDIIEN-DNTCIGAICLKDNKQINIYSKVTILATGGI 188 (433)
T ss_pred HHHHHHHHHHhcCCCEEEECcEeeeeEec-CCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence 34445555554 59999999999998754 56666654 33454 58999999999963
No 467
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=96.52 E-value=0.024 Score=58.60 Aligned_cols=57 Identities=19% Similarity=0.296 Sum_probs=41.0
Q ss_pred HHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEeCC-C--cEEEcCEEEEeecCccC
Q 011351 251 LAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLED-G--STIDADTIVIGIGAKPT 308 (488)
Q Consensus 251 ~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l~~-g--~~i~~D~vi~a~G~~p~ 308 (488)
+...+.+.+++ .||+++.++.++++..+ ++.+.++...+ + ..+.++.||+|+|-...
T Consensus 130 l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 130 VITTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 34445555665 68999999999999754 56666665543 3 36899999999997543
No 468
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.50 E-value=0.033 Score=58.41 Aligned_cols=54 Identities=13% Similarity=0.223 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeecCc
Q 011351 253 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 306 (488)
Q Consensus 253 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~--~i~~D~vi~a~G~~ 306 (488)
..+.+.+++.||++++++.++++..++++++.++.. .+|+ .+.++.||+|||-.
T Consensus 138 ~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 138 MGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred HHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 334555666799999999999987654444766653 4564 58899999999953
No 469
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.50 E-value=0.027 Score=58.53 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=30.7
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~ 240 (488)
-.|+|||||.+|+-+|..|+++|.+|.++++.+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d 39 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKDD 39 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence 369999999999999999999999999999874
No 470
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=96.50 E-value=0.036 Score=59.16 Aligned_cols=102 Identities=22% Similarity=0.333 Sum_probs=69.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCcCccc----------------------------------------
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQR---------------------------------------- 245 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~-g~~v~lv~~~~~~l~~---------------------------------------- 245 (488)
.-.|+|||+|+.|+-+|..|+++ |.+|+++++.+.....
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~ 111 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP 111 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence 45799999999999999999995 9999999877211100
Q ss_pred -------------------------ccC-HHHHHHHHHHHHHcC--cEEEcCCeEEEEEeCCCC-cEEEEEeC------C
Q 011351 246 -------------------------LFT-PSLAQRYEQLYQQNG--VKFVKGASIKNLEAGSDG-RVAAVKLE------D 290 (488)
Q Consensus 246 -------------------------~~~-~~~~~~~~~~l~~~G--V~v~~~~~v~~i~~~~~~-~v~~v~l~------~ 290 (488)
.+. ..+.+.+.+.+.+.| +++.+++++++++.++++ ..+.+.+. +
T Consensus 112 ~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~ 191 (634)
T PRK08294 112 ADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHE 191 (634)
T ss_pred ccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCC
Confidence 000 013344555566655 578889999999865322 21245553 3
Q ss_pred C--cEEEcCEEEEeecCccC
Q 011351 291 G--STIDADTIVIGIGAKPT 308 (488)
Q Consensus 291 g--~~i~~D~vi~a~G~~p~ 308 (488)
| +++.||+||-|-|.+..
T Consensus 192 g~~~tv~A~~lVGaDGa~S~ 211 (634)
T PRK08294 192 GEEETVRAKYVVGCDGARSR 211 (634)
T ss_pred CceEEEEeCEEEECCCCchH
Confidence 5 57999999999997653
No 471
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.46 E-value=0.032 Score=59.10 Aligned_cols=36 Identities=31% Similarity=0.381 Sum_probs=32.9
Q ss_pred hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 011351 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (488)
Q Consensus 205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~ 240 (488)
.+..+|+|||||+.|+-+|..|++.|.+|+++++.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 456789999999999999999999999999999864
No 472
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.44 E-value=0.04 Score=58.33 Aligned_cols=52 Identities=23% Similarity=0.261 Sum_probs=36.9
Q ss_pred HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeecCcc
Q 011351 256 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP 307 (488)
Q Consensus 256 ~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~--~i~~D~vi~a~G~~p 307 (488)
.+...+.|++++.++.++++..++++++.++.. .+|+ .+.++.||+|+|-..
T Consensus 155 ~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 155 YQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred HHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 333455688888888888877554577777754 3454 578999999999643
No 473
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.44 E-value=0.033 Score=55.50 Aligned_cols=101 Identities=24% Similarity=0.335 Sum_probs=62.2
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCcCccc---------------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKL---DTTIIFPENHLLQR--------------------------------------- 245 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~---~v~lv~~~~~~l~~--------------------------------------- 245 (488)
++|+|||+|++|+.+|..|.+.-. .++++++.+.+-..
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 479999999999999999987521 37777766221100
Q ss_pred -------------------ccCHHHHHHHHHHHHHcC---cEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEee
Q 011351 246 -------------------LFTPSLAQRYEQLYQQNG---VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI 303 (488)
Q Consensus 246 -------------------~~~~~~~~~~~~~l~~~G---V~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~ 303 (488)
.++..+.+.+..++++.- |.++. ++.+.+...+++....+...+|.+..||.+|++|
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~-~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIR-EEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEe-eeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 011112333333333333 33332 3344444443455556778899999999999999
Q ss_pred cCccCC
Q 011351 304 GAKPTV 309 (488)
Q Consensus 304 G~~p~~ 309 (488)
|..+..
T Consensus 161 gh~~~~ 166 (474)
T COG4529 161 GHSAPP 166 (474)
T ss_pred cCCCCC
Confidence 987654
No 474
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.44 E-value=0.045 Score=58.12 Aligned_cols=96 Identities=20% Similarity=0.329 Sum_probs=65.7
Q ss_pred eEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCcCcccc-----------c----C-----------------------
Q 011351 209 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQRL-----------F----T----------------------- 248 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~--g~~v~lv~~~~~~l~~~-----------~----~----------------------- 248 (488)
.|+|||+|..|+-.|..+++. |.+|.++++.+...... + +
T Consensus 13 DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv~~ 92 (608)
T PRK06854 13 DILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLVYD 92 (608)
T ss_pred CEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHHHH
Confidence 599999999999999999998 89999988653110000 0 0
Q ss_pred ---------------------------------------HHHHHHHHHHHHHcC-cEEEcCCeEEEEEeCCCCcEEEEE-
Q 011351 249 ---------------------------------------PSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVK- 287 (488)
Q Consensus 249 ---------------------------------------~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~~~v~~v~- 287 (488)
..+...+.+.+++.+ |+++.++.+.++..+ ++++.++.
T Consensus 93 ~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~-~g~v~Gv~~ 171 (608)
T PRK06854 93 IARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVD-DNRIAGAVG 171 (608)
T ss_pred HHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEe-CCEEEEEEE
Confidence 011122333444555 999999999998753 46666653
Q ss_pred --eCCCc--EEEcCEEEEeecC
Q 011351 288 --LEDGS--TIDADTIVIGIGA 305 (488)
Q Consensus 288 --l~~g~--~i~~D~vi~a~G~ 305 (488)
..+|+ .+.++.||+|+|-
T Consensus 172 ~~~~~g~~~~i~AkaVILATGG 193 (608)
T PRK06854 172 FSVRENKFYVFKAKAVIVATGG 193 (608)
T ss_pred EEccCCcEEEEECCEEEECCCc
Confidence 24554 6899999999994
No 475
>PLN02985 squalene monooxygenase
Probab=96.44 E-value=0.04 Score=57.22 Aligned_cols=99 Identities=23% Similarity=0.260 Sum_probs=65.5
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc------------------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------ 245 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~------------------------------------------ 245 (488)
..|+|||+|..|+-+|..|++.|.+|+++++.+....+
T Consensus 44 ~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g~~ 123 (514)
T PLN02985 44 TDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDGKE 123 (514)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECCEE
Confidence 46999999999999999999999999999976210000
Q ss_pred ---cc-----------------CHHHHHHHHHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEe--CCCcE--EEcCEEE
Q 011351 246 ---LF-----------------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKL--EDGST--IDADTIV 300 (488)
Q Consensus 246 ---~~-----------------~~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~~~v~~v~l--~~g~~--i~~D~vi 300 (488)
.+ ...+.+.+.+.+++. ||+++.+ +++++..+ ++.+.+|.+ .+|++ +.+|+||
T Consensus 124 ~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~-~~~v~gV~~~~~dG~~~~~~AdLVV 201 (514)
T PLN02985 124 AVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEE-KGVIKGVTYKNSAGEETTALAPLTV 201 (514)
T ss_pred EEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEc-CCEEEEEEEEcCCCCEEEEECCEEE
Confidence 00 011233344444444 7888866 46665533 444445554 46654 5699999
Q ss_pred EeecCccC
Q 011351 301 IGIGAKPT 308 (488)
Q Consensus 301 ~a~G~~p~ 308 (488)
.|.|....
T Consensus 202 gADG~~S~ 209 (514)
T PLN02985 202 VCDGCYSN 209 (514)
T ss_pred ECCCCchH
Confidence 99998764
No 476
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=96.38 E-value=0.04 Score=58.63 Aligned_cols=54 Identities=20% Similarity=0.257 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeecCc
Q 011351 253 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 306 (488)
Q Consensus 253 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~--~i~~D~vi~a~G~~ 306 (488)
..+.+...+.||+++.++.++++..++++++.++.. .+|+ .+.++.||+|||--
T Consensus 191 ~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 249 (635)
T PLN00128 191 HTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGY 249 (635)
T ss_pred HHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCC
Confidence 344444556789999999999977554577777754 3454 57899999999953
No 477
>PLN03000 amine oxidase
Probab=96.35 E-value=0.005 Score=66.43 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=34.7
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 90 (488)
...++|+|||||++|+.||..|.+.|+ +|+|+|+.+...
T Consensus 182 ~~~~~VvIIGaG~aGL~aA~~L~~~G~---~V~VlE~~~riG 220 (881)
T PLN03000 182 SSKSSVVIVGAGLSGLAAARQLMRFGF---KVTVLEGRKRPG 220 (881)
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCCC---cEEEEEccCcCC
Confidence 356899999999999999999999987 899999987653
No 478
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.35 E-value=0.06 Score=56.96 Aligned_cols=57 Identities=21% Similarity=0.252 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEeCCC---CcEEEEEe---CCCc--EEEcCEEEEeecCcc
Q 011351 251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSD---GRVAAVKL---EDGS--TIDADTIVIGIGAKP 307 (488)
Q Consensus 251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~---~~v~~v~l---~~g~--~i~~D~vi~a~G~~p 307 (488)
+...+.+.+++.||+++.++.++++..+++ +++.++.. .+|+ .+.++.||+|||-..
T Consensus 142 i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 142 ILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 344566667778999999999999875432 67777754 3554 578999999999754
No 479
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.31 E-value=0.048 Score=57.59 Aligned_cols=55 Identities=16% Similarity=0.250 Sum_probs=40.5
Q ss_pred HHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEE---eCCCc--EEEcCEEEEeecCcc
Q 011351 252 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAKP 307 (488)
Q Consensus 252 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~---l~~g~--~i~~D~vi~a~G~~p 307 (488)
...+.+.+++.||+++.++.++++..+ ++++.++. +.+|+ .+.++.||+|||-..
T Consensus 138 ~~~L~~~~~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 138 LHELVNNLRRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred HHHHHHHHhhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 344556667789999999999998753 56666654 34564 589999999999743
No 480
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.012 Score=55.49 Aligned_cols=100 Identities=27% Similarity=0.400 Sum_probs=76.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC--CcC-----------cccccCHHHHHHHHHHHHHcCcEEEcCCeEE
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHL-----------LQRLFTPSLAQRYEQLYQQNGVKFVKGASIK 273 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~--~~~-----------l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~ 273 (488)
+-.|+|||+|+.|.-.|-+.++.|.+.-++..+ ..+ .+..-++++...+++..++..|++....+.+
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra~ 290 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRAS 290 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhhh
Confidence 447999999999999999988887664332211 011 1123467889999999999999999888888
Q ss_pred EEEeC-CCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351 274 NLEAG-SDGRVAAVKLEDGSTIDADTIVIGIGAK 306 (488)
Q Consensus 274 ~i~~~-~~~~v~~v~l~~g~~i~~D~vi~a~G~~ 306 (488)
.+++. ..+....|++++|-.+++..+|++||.+
T Consensus 291 ~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 291 KLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred cceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 88763 2344568999999999999999999986
No 481
>PLN02976 amine oxidase
Probab=96.26 E-value=0.0062 Score=68.40 Aligned_cols=38 Identities=21% Similarity=0.430 Sum_probs=33.8
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 89 (488)
...++|+|||||++|+++|..|.+.|+ +|+|+|+++..
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~---~V~VlEa~~~v 728 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGF---SVTVLEARSRI 728 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCC---cEEEEeeccCC
Confidence 345899999999999999999999987 89999998764
No 482
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.22 E-value=0.062 Score=57.30 Aligned_cols=31 Identities=29% Similarity=0.436 Sum_probs=28.2
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~ 239 (488)
.|+|||+|..|+-.|..+++.|.+|.+++..
T Consensus 10 DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~ 40 (626)
T PRK07803 10 DVVVIGAGGAGLRAAIEARERGLRVAVVCKS 40 (626)
T ss_pred cEEEECcCHHHHHHHHHHHHCCCCEEEEecc
Confidence 5999999999999999999999999998765
No 483
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.20 E-value=0.0062 Score=63.86 Aligned_cols=66 Identities=20% Similarity=0.242 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-CCc--EEEc-CEEEEeecCc-cCChhhhh
Q 011351 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDA-DTIVIGIGAK-PTVSPFER 314 (488)
Q Consensus 248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~-~g~--~i~~-D~vi~a~G~~-p~~~~~~~ 314 (488)
+..+...+.+.+++.||++++++.++++..+ +++|.+|... +|+ .+.+ ..||+|+|-- .|.+++++
T Consensus 216 G~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~em~~~ 286 (564)
T PRK12845 216 GQALAAGLFAGVLRAGIPIWTETSLVRLTDD-GGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDMEMRWK 286 (564)
T ss_pred hHHHHHHHHHHHHHCCCEEEecCEeeEEEec-CCEEEEEEEEECCcEEEEEcCCEEEEecCCccccHHHHHH
Confidence 5677788888888999999999999998753 6788877543 343 3555 5788887754 34344443
No 484
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=96.16 E-value=0.016 Score=53.38 Aligned_cols=34 Identities=41% Similarity=0.564 Sum_probs=28.9
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCC------CcEEEEecC
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWK------LDTTIIFPE 239 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g------~~v~lv~~~ 239 (488)
..++++|||||.+|+-.|..|.+.+ ..||+++..
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~ 48 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESK 48 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeec
Confidence 3488999999999999999999876 578888765
No 485
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.16 E-value=0.0072 Score=58.34 Aligned_cols=103 Identities=21% Similarity=0.253 Sum_probs=67.7
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCC-CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCH
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~-~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (488)
..++.|.|||+|+-|-..|..|.+.-. .+.+|.-+=.+.+. ..+ . .|..+ .+...
T Consensus 345 aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~n------m~k--i-----LPeyl-----------s~wt~ 400 (659)
T KOG1346|consen 345 AEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYN------MEK--I-----LPEYL-----------SQWTI 400 (659)
T ss_pred hhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCC------hhh--h-----hHHHH-----------HHHHH
Confidence 346899999999999999999987532 12233322222110 000 0 01000 11234
Q ss_pred hHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351 128 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 128 ~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
+-.++.|++++.+..|.++....+ .+.+.||.++..|.+|+|+|..|+
T Consensus 401 ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN 450 (659)
T KOG1346|consen 401 EKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPN 450 (659)
T ss_pred HHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCc
Confidence 455778999999888887766543 567899999999999999999876
No 486
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.14 E-value=0.045 Score=51.35 Aligned_cols=52 Identities=23% Similarity=0.356 Sum_probs=37.8
Q ss_pred CcEEEcCCeEEEEEeCCCCcEEEEEeCC--C--cEEEcCEEEEeecCccC--Chhhhhc
Q 011351 263 GVKFVKGASIKNLEAGSDGRVAAVKLED--G--STIDADTIVIGIGAKPT--VSPFERV 315 (488)
Q Consensus 263 GV~v~~~~~v~~i~~~~~~~v~~v~l~~--g--~~i~~D~vi~a~G~~p~--~~~~~~~ 315 (488)
-+++.++++|+.+.+ ++++|.+|+..| | ..+.+|.||+|+|--.. .++++..
T Consensus 159 ~~ki~~nskvv~il~-n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~ysd~~lLKey 216 (477)
T KOG2404|consen 159 LVKILLNSKVVDILR-NNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGYSDKELLKEY 216 (477)
T ss_pred HHhhhhcceeeeeec-CCCeEEEEEEEcCCCCccceecCceEEecCCcCcChHHHHHHh
Confidence 478999999999994 578888887754 3 35789999999875443 3455543
No 487
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.14 E-value=0.015 Score=57.40 Aligned_cols=70 Identities=20% Similarity=0.400 Sum_probs=53.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc------cCHH------HHHHHHHHHHHcCcEEEcCCeEEE
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------FTPS------LAQRYEQLYQQNGVKFVKGASIKN 274 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~------~~~~------~~~~~~~~l~~~GV~v~~~~~v~~ 274 (488)
.++++|||||..|++.|..|++.|.+|++++..+.+-.+. |+.. +...+.+.-..-+|++++.++|++
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~e 203 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEE 203 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeeee
Confidence 5689999999999999999999999999999998765431 1111 122233334456899999999999
Q ss_pred EE
Q 011351 275 LE 276 (488)
Q Consensus 275 i~ 276 (488)
+.
T Consensus 204 v~ 205 (622)
T COG1148 204 VS 205 (622)
T ss_pred ec
Confidence 86
No 488
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=96.12 E-value=0.071 Score=55.42 Aligned_cols=33 Identities=27% Similarity=0.472 Sum_probs=30.5
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~ 240 (488)
-.|+|||||.+|+-+|..++.+|.+|.++++.+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 469999999999999999999999999999863
No 489
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.11 E-value=0.011 Score=42.72 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=29.6
Q ss_pred EECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc
Q 011351 212 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 244 (488)
Q Consensus 212 VvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~ 244 (488)
|||+|.+|+-+|..|.+.+.+|+++++.+++-.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG 33 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGG 33 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCc
Confidence 799999999999999999999999999987654
No 490
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=96.11 E-value=0.0075 Score=57.78 Aligned_cols=38 Identities=21% Similarity=0.427 Sum_probs=33.5
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
.....||+|||||.+|-+.|+.|.+.|. +|.+||++-.
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGR---rVhVIERDl~ 79 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGR---RVHVIERDLS 79 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCc---EEEEEecccc
Confidence 3456799999999999999999999987 8999998854
No 491
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=96.05 E-value=0.0068 Score=62.68 Aligned_cols=62 Identities=16% Similarity=0.222 Sum_probs=44.9
Q ss_pred HHHHHcCcEEEcCCeEEEEEeCCC--CcEEEEEeC---CCc--EEEcCEEEEeecCccCChhhhhcCCc
Q 011351 257 QLYQQNGVKFVKGASIKNLEAGSD--GRVAAVKLE---DGS--TIDADTIVIGIGAKPTVSPFERVGLN 318 (488)
Q Consensus 257 ~~l~~~GV~v~~~~~v~~i~~~~~--~~v~~v~l~---~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~ 318 (488)
+.++..+++++.++.|.+|..+++ +++++|... +|+ ++.|+.||+|.|..-+..+|-.++..
T Consensus 222 ~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~S~~~ 290 (544)
T TIGR02462 222 DDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVNSGFG 290 (544)
T ss_pred hhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHhCCCC
Confidence 334455699999999999986644 356666443 343 58999999999988777777665543
No 492
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.05 E-value=0.077 Score=56.13 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=35.8
Q ss_pred HHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeecCc
Q 011351 255 YEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 306 (488)
Q Consensus 255 ~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~--~i~~D~vi~a~G~~ 306 (488)
+.+.+.+ .||+++.++.++++..+ ++++.++.. .+|+ .+.++.||+|||-.
T Consensus 143 L~~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (577)
T PRK06069 143 LYSRALRFDNIHFYDEHFVTSLIVE-NGVFKGVTAIDLKRGEFKVFQAKAGIIATGGA 199 (577)
T ss_pred HHHHHHhcCCCEEEECCEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence 3333434 58999999888888753 566666543 4564 58999999999965
No 493
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.04 E-value=0.07 Score=56.47 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=28.1
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~ 239 (488)
.|+|||+|..|+-.|..+++.|.+|.+++..
T Consensus 5 DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~ 35 (589)
T PRK08641 5 KVIVVGGGLAGLMATIKAAEAGVHVDLFSLV 35 (589)
T ss_pred cEEEECchHHHHHHHHHHHHcCCcEEEEEcc
Confidence 6999999999999999999999999998743
No 494
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.04 E-value=0.018 Score=62.80 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=30.1
Q ss_pred eEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCc
Q 011351 209 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENH 241 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~--g~~v~lv~~~~~ 241 (488)
+|+|||+|+.|+-+|..|++. |.+|+++++.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 689999999999999999998 889999998754
No 495
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.99 E-value=0.067 Score=56.50 Aligned_cols=34 Identities=38% Similarity=0.456 Sum_probs=30.5
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 241 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~ 241 (488)
-.|+|||+|..|+-.|..+++.|.+|.++++.+.
T Consensus 12 ~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~ 45 (584)
T PRK12835 12 VDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAH 45 (584)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 4699999999999999999999999999987643
No 496
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.96 E-value=0.032 Score=57.12 Aligned_cols=82 Identities=22% Similarity=0.266 Sum_probs=58.7
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 285 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~ 285 (488)
.+++++|+|+|.+|..+|..|.+.|.+|+++++... +.+. ...+.+.+.|++++.+....+
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~-------~~~~-~~~~~l~~~~~~~~~~~~~~~----------- 64 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE-------DQLK-EALEELGELGIELVLGEYPEE----------- 64 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------HHHH-HHHHHHHhcCCEEEeCCcchh-----------
Confidence 468999999999999999999999999999877541 1222 222345677887765432210
Q ss_pred EEeCCCcEEEcCEEEEeecCccCChhh
Q 011351 286 VKLEDGSTIDADTIVIGIGAKPTVSPF 312 (488)
Q Consensus 286 v~l~~g~~i~~D~vi~a~G~~p~~~~~ 312 (488)
..-.+|.||.++|..++.+.+
T Consensus 65 ------~~~~~d~vv~~~g~~~~~~~~ 85 (450)
T PRK14106 65 ------FLEGVDLVVVSPGVPLDSPPV 85 (450)
T ss_pred ------HhhcCCEEEECCCCCCCCHHH
Confidence 012479999999998887654
No 497
>PRK07395 L-aspartate oxidase; Provisional
Probab=95.96 E-value=0.046 Score=57.31 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=36.6
Q ss_pred HHHHHHHHH-cCcEEEcCCeEEEEEeCC-CCcEEEEEe-CCCc--EEEcCEEEEeecC
Q 011351 253 QRYEQLYQQ-NGVKFVKGASIKNLEAGS-DGRVAAVKL-EDGS--TIDADTIVIGIGA 305 (488)
Q Consensus 253 ~~~~~~l~~-~GV~v~~~~~v~~i~~~~-~~~v~~v~l-~~g~--~i~~D~vi~a~G~ 305 (488)
..+.+.+++ .||+++.++.++++..++ ++++.++.. .+|+ .+.++.||+|||-
T Consensus 138 ~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG 195 (553)
T PRK07395 138 TTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGG 195 (553)
T ss_pred HHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCC
Confidence 334444444 489999998888887543 367777654 3454 3789999999996
No 498
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=95.86 E-value=0.002 Score=56.36 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=32.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
..||||||+|.|||+||+.+.+... +.+|+|||..-.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rP-dlkvaIIE~SVa 112 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRP-DLKVAIIESSVA 112 (328)
T ss_pred ccceEEECCCccccceeeeeeccCC-CceEEEEEeeec
Confidence 3599999999999999999997764 889999998754
No 499
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=95.84 E-value=0.019 Score=46.09 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=44.5
Q ss_pred CcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCCh--hhhcCCCcHHHHHHHHH
Q 011351 422 PKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK--AKLQQASSVEEALEIAR 479 (488)
Q Consensus 422 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 479 (488)
..+.|+.++ +++|+|+++++.++.++... ..+|+++.+++. ..+..||+++|+++.|+
T Consensus 48 ~g~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~~ai~~~~t~~~l~~~~~~~Pt~se~~~~a~ 110 (110)
T PF02852_consen 48 EGFVKLIFDKKTGRILGAQIVGPNASELINELALAIQNGLTVEDLADDIFYHPTFSEAIQEAA 110 (110)
T ss_dssp EEEEEEEEETTTTBEEEEEEEETTHHHHHHHHHHHHHTTSBHHHHHTSBSSSTSTGHHHHHHH
T ss_pred ceeeEEEEEeeccceeeeeeecCchHHHHHHHHHHHHcCCCHHHHhCCeeeCCChhHHHHHhC
Confidence 346677664 59999999988888776655 556788888873 33588999999999886
No 500
>PRK08071 L-aspartate oxidase; Provisional
Probab=95.82 E-value=0.068 Score=55.57 Aligned_cols=45 Identities=27% Similarity=0.330 Sum_probs=33.0
Q ss_pred cCcEEEcCCeEEEEEeCCCCcEEEEEeCC--Cc--EEEcCEEEEeecCcc
Q 011351 262 NGVKFVKGASIKNLEAGSDGRVAAVKLED--GS--TIDADTIVIGIGAKP 307 (488)
Q Consensus 262 ~GV~v~~~~~v~~i~~~~~~~v~~v~l~~--g~--~i~~D~vi~a~G~~p 307 (488)
.||+++.++.++++..+ ++++.++...+ |+ .+.++.||+|+|-..
T Consensus 142 ~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 142 PHVTVVEQEMVIDLIIE-NGRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred cCCEEEECeEhhheeec-CCEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 47888888888888643 56666665543 33 588999999998754
Done!