Query 011351
Match_columns 488
No_of_seqs 391 out of 3452
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 06:20:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011351.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011351hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lxd_A FAD-dependent pyridine 100.0 2.8E-58 9.7E-63 464.0 46.6 396 49-469 7-407 (415)
2 3fg2_P Putative rubredoxin red 100.0 6.9E-58 2.4E-62 459.4 47.5 394 51-470 1-397 (404)
3 3ef6_A Toluene 1,2-dioxygenase 100.0 5.9E-58 2E-62 460.3 43.5 391 51-469 2-395 (410)
4 1q1r_A Putidaredoxin reductase 100.0 6.7E-54 2.3E-58 433.2 45.6 405 50-478 3-415 (431)
5 3klj_A NAD(FAD)-dependent dehy 100.0 2.4E-55 8.3E-60 436.2 33.3 375 48-477 6-384 (385)
6 2gqw_A Ferredoxin reductase; f 100.0 4.6E-54 1.6E-58 431.6 42.4 392 50-475 6-403 (408)
7 1m6i_A Programmed cell death p 100.0 1.5E-51 5.3E-56 422.6 31.1 406 48-461 8-479 (493)
8 4eqs_A Coenzyme A disulfide re 100.0 1.3E-49 4.5E-54 402.1 33.6 393 52-474 1-425 (437)
9 1xhc_A NADH oxidase /nitrite r 100.0 2.4E-48 8.1E-53 384.2 33.6 354 51-454 8-362 (367)
10 2bc0_A NADH oxidase; flavoprot 100.0 1.3E-48 4.4E-53 401.3 32.1 407 50-480 34-483 (490)
11 3iwa_A FAD-dependent pyridine 100.0 3.4E-48 1.2E-52 396.8 33.1 411 51-478 3-450 (472)
12 3oc4_A Oxidoreductase, pyridin 100.0 5.5E-48 1.9E-52 393.0 34.2 397 52-474 3-427 (452)
13 2cdu_A NADPH oxidase; flavoenz 100.0 1.8E-48 6.1E-53 396.7 29.9 403 52-478 1-436 (452)
14 3kd9_A Coenzyme A disulfide re 100.0 2.3E-47 7.7E-52 388.2 31.6 399 50-475 2-430 (449)
15 2v3a_A Rubredoxin reductase; a 100.0 2.1E-46 7.2E-51 373.5 37.0 369 50-453 3-378 (384)
16 3cgb_A Pyridine nucleotide-dis 100.0 1.2E-46 4E-51 385.8 33.3 403 51-479 36-473 (480)
17 1nhp_A NADH peroxidase; oxidor 100.0 3.4E-47 1.2E-51 386.7 28.3 402 52-479 1-436 (447)
18 3ntd_A FAD-dependent pyridine 100.0 4.7E-46 1.6E-50 389.9 34.5 386 52-461 2-437 (565)
19 3ics_A Coenzyme A-disulfide re 100.0 1E-44 3.4E-49 381.0 40.1 408 17-461 14-453 (588)
20 1mo9_A ORF3; nucleotide bindin 100.0 2.4E-42 8.2E-47 357.1 39.1 403 48-484 40-519 (523)
21 2qae_A Lipoamide, dihydrolipoy 100.0 1.8E-42 6.1E-47 354.0 35.3 400 51-484 2-463 (468)
22 1zmd_A Dihydrolipoyl dehydroge 100.0 1.8E-42 6.1E-47 354.6 34.6 402 50-482 5-466 (474)
23 1xdi_A RV3303C-LPDA; reductase 100.0 1.6E-42 5.6E-47 356.9 33.2 400 51-484 2-466 (499)
24 2hqm_A GR, grase, glutathione 100.0 4E-42 1.4E-46 352.0 34.6 396 50-480 10-472 (479)
25 1zk7_A HGII, reductase, mercur 100.0 4.3E-42 1.5E-46 351.1 34.6 397 50-483 3-456 (467)
26 2a8x_A Dihydrolipoyl dehydroge 100.0 1.9E-42 6.6E-47 353.4 30.6 399 51-484 3-459 (464)
27 1ojt_A Surface protein; redox- 100.0 6.3E-43 2.2E-47 358.4 26.6 400 50-484 5-472 (482)
28 1v59_A Dihydrolipoamide dehydr 100.0 9.1E-43 3.1E-47 357.3 27.1 404 50-484 4-473 (478)
29 1dxl_A Dihydrolipoamide dehydr 100.0 3.4E-42 1.2E-46 352.4 31.1 402 49-484 4-465 (470)
30 1ebd_A E3BD, dihydrolipoamide 100.0 3.5E-42 1.2E-46 350.6 30.8 396 51-482 3-454 (455)
31 3l8k_A Dihydrolipoyl dehydroge 100.0 8.7E-42 3E-46 348.5 28.6 400 51-483 4-458 (466)
32 2eq6_A Pyruvate dehydrogenase 100.0 4.9E-41 1.7E-45 342.6 34.0 395 51-484 6-456 (464)
33 3urh_A Dihydrolipoyl dehydroge 100.0 5.5E-42 1.9E-46 352.4 26.7 404 48-485 22-487 (491)
34 1ges_A Glutathione reductase; 100.0 2.8E-41 9.5E-46 343.1 31.2 390 50-477 3-448 (450)
35 2wpf_A Trypanothione reductase 100.0 1.8E-41 6.2E-46 348.0 30.1 317 130-479 117-475 (495)
36 1onf_A GR, grase, glutathione 100.0 8.8E-42 3E-46 351.2 27.7 401 51-479 2-496 (500)
37 1fec_A Trypanothione reductase 100.0 1.8E-42 6.1E-47 355.2 20.2 317 130-479 113-471 (490)
38 3lad_A Dihydrolipoamide dehydr 100.0 4.5E-40 1.5E-44 337.1 37.0 402 50-485 2-467 (476)
39 2r9z_A Glutathione amide reduc 100.0 1.9E-40 6.5E-45 337.9 34.0 391 50-479 3-448 (463)
40 3dk9_A Grase, GR, glutathione 100.0 2.9E-41 9.8E-46 346.0 26.3 396 49-477 18-476 (478)
41 2yqu_A 2-oxoglutarate dehydrog 100.0 2.1E-40 7.2E-45 337.5 31.5 397 52-484 2-450 (455)
42 4dna_A Probable glutathione re 100.0 5.4E-41 1.8E-45 342.5 26.8 395 50-481 4-452 (463)
43 1lvl_A Dihydrolipoamide dehydr 100.0 3.4E-40 1.2E-44 335.8 32.2 395 50-485 4-454 (458)
44 3ic9_A Dihydrolipoamide dehydr 100.0 1.1E-40 3.8E-45 342.0 26.6 397 50-484 7-468 (492)
45 3o0h_A Glutathione reductase; 100.0 2.3E-41 7.8E-46 347.0 21.4 395 50-481 25-472 (484)
46 3dgz_A Thioredoxin reductase 2 100.0 1.5E-39 5E-44 334.0 34.2 399 49-480 4-476 (488)
47 3qfa_A Thioredoxin reductase 1 100.0 4.4E-40 1.5E-44 339.6 30.3 400 49-480 30-504 (519)
48 3dgh_A TRXR-1, thioredoxin red 100.0 5.2E-41 1.8E-45 344.4 22.9 398 49-479 7-475 (483)
49 4g6h_A Rotenone-insensitive NA 100.0 6E-41 2E-45 343.5 20.8 298 48-376 39-398 (502)
50 4b1b_A TRXR, thioredoxin reduc 100.0 6.8E-40 2.3E-44 336.5 26.6 399 51-483 42-525 (542)
51 2x8g_A Thioredoxin glutathione 100.0 1.6E-38 5.4E-43 334.3 30.4 398 49-481 105-584 (598)
52 2vdc_G Glutamate synthase [NAD 100.0 3.5E-39 1.2E-43 326.2 12.8 330 3-376 60-441 (456)
53 2zbw_A Thioredoxin reductase; 100.0 7.9E-38 2.7E-42 306.0 21.7 298 49-376 3-314 (335)
54 3ab1_A Ferredoxin--NADP reduct 100.0 8.7E-38 3E-42 308.8 21.5 299 49-376 12-325 (360)
55 4gcm_A TRXR, thioredoxin reduc 100.0 4E-37 1.4E-41 297.9 25.3 294 47-375 2-302 (312)
56 3lzw_A Ferredoxin--NADP reduct 100.0 1.4E-37 4.6E-42 303.6 16.0 293 50-376 6-312 (332)
57 3f8d_A Thioredoxin reductase ( 100.0 1.9E-36 6.6E-41 294.2 23.5 290 50-376 14-314 (323)
58 1gte_A Dihydropyrimidine dehyd 100.0 2.9E-37 9.8E-42 341.1 17.3 348 3-390 117-526 (1025)
59 3hyw_A Sulfide-quinone reducta 100.0 2E-36 7E-41 305.4 21.3 302 51-376 2-330 (430)
60 3cty_A Thioredoxin reductase; 100.0 1.3E-35 4.4E-40 288.3 24.5 289 49-376 14-313 (319)
61 3vrd_B FCCB subunit, flavocyto 100.0 3.9E-36 1.3E-40 301.3 21.4 297 51-376 2-321 (401)
62 3h8l_A NADH oxidase; membrane 100.0 2.1E-35 7.3E-40 296.6 25.8 288 52-376 2-333 (409)
63 3fbs_A Oxidoreductase; structu 100.0 4.5E-36 1.6E-40 288.1 19.9 278 51-376 2-289 (297)
64 4a5l_A Thioredoxin reductase; 100.0 2.6E-36 8.9E-41 292.4 17.2 299 49-375 2-308 (314)
65 2q7v_A Thioredoxin reductase; 100.0 3.3E-35 1.1E-39 286.1 24.8 288 50-376 7-309 (325)
66 3sx6_A Sulfide-quinone reducta 100.0 7.4E-36 2.5E-40 302.3 20.9 304 51-376 4-341 (437)
67 1fl2_A Alkyl hydroperoxide red 100.0 1.4E-35 4.7E-40 286.8 21.7 285 52-376 2-302 (310)
68 1trb_A Thioredoxin reductase; 100.0 1.1E-35 3.6E-40 288.9 20.6 292 50-376 4-311 (320)
69 3itj_A Thioredoxin reductase 1 100.0 7.2E-36 2.5E-40 292.1 18.7 295 48-376 19-332 (338)
70 3r9u_A Thioredoxin reductase; 100.0 4.9E-35 1.7E-39 283.3 24.1 289 50-376 3-309 (315)
71 4fk1_A Putative thioredoxin re 100.0 1.2E-35 4E-40 286.5 18.4 285 48-375 3-296 (304)
72 2q0l_A TRXR, thioredoxin reduc 100.0 4.4E-35 1.5E-39 283.4 21.9 288 52-376 2-306 (311)
73 1vdc_A NTR, NADPH dependent th 100.0 2.3E-34 7.7E-39 281.1 21.0 300 50-376 7-320 (333)
74 4a9w_A Monooxygenase; baeyer-v 100.0 2.6E-34 8.9E-39 283.1 17.9 300 51-376 3-349 (357)
75 2a87_A TRXR, TR, thioredoxin r 100.0 6.6E-34 2.3E-38 278.1 20.1 288 49-375 12-312 (335)
76 3d1c_A Flavin-containing putat 100.0 1.2E-33 4.2E-38 279.9 22.1 307 51-378 4-338 (369)
77 1hyu_A AHPF, alkyl hydroperoxi 100.0 2.7E-33 9.4E-38 288.8 24.9 288 49-376 210-513 (521)
78 3h28_A Sulfide-quinone reducta 100.0 4.7E-34 1.6E-38 288.5 17.6 298 51-376 2-330 (430)
79 1cjc_A Protein (adrenodoxin re 100.0 1.3E-32 4.3E-37 278.9 11.9 291 50-376 5-392 (460)
80 1o94_A Tmadh, trimethylamine d 100.0 1.8E-32 6E-37 293.3 13.1 293 49-396 387-714 (729)
81 2xve_A Flavin-containing monoo 100.0 4.5E-31 1.6E-35 268.5 21.5 289 51-378 2-340 (464)
82 3k30_A Histamine dehydrogenase 100.0 5.3E-32 1.8E-36 288.5 11.5 276 48-377 388-673 (690)
83 1lqt_A FPRA; NADP+ derivative, 100.0 1E-31 3.4E-36 272.0 10.9 287 50-376 2-384 (456)
84 2gag_A Heterotetrameric sarcos 100.0 8.4E-31 2.9E-35 287.6 19.0 279 51-376 128-441 (965)
85 3s5w_A L-ornithine 5-monooxyge 100.0 1.7E-30 5.8E-35 265.3 18.1 314 50-374 29-444 (463)
86 1y56_A Hypothetical protein PH 100.0 2.4E-30 8.2E-35 265.2 14.1 253 51-376 108-374 (493)
87 1ps9_A 2,4-dienoyl-COA reducta 100.0 1.1E-29 3.6E-34 270.1 17.1 262 48-374 370-671 (671)
88 2gv8_A Monooxygenase; FMO, FAD 100.0 8.7E-29 3E-33 251.2 17.6 289 49-378 4-361 (447)
89 3gwf_A Cyclohexanone monooxyge 100.0 1.2E-27 4.1E-32 246.9 17.7 300 50-375 7-453 (540)
90 3uox_A Otemo; baeyer-villiger 99.9 3.8E-26 1.3E-30 235.9 16.0 307 49-375 7-462 (545)
91 4ap3_A Steroid monooxygenase; 99.9 3.6E-25 1.2E-29 228.9 19.3 304 49-375 19-467 (549)
92 1w4x_A Phenylacetone monooxyge 99.9 2.6E-24 9E-29 223.1 19.5 303 49-376 14-463 (542)
93 2ywl_A Thioredoxin reductase r 99.9 1.2E-21 4.1E-26 173.2 17.7 153 209-376 3-168 (180)
94 4b63_A L-ornithine N5 monooxyg 99.8 8.8E-19 3E-23 179.5 21.7 292 50-343 38-457 (501)
95 2e5v_A L-aspartate oxidase; ar 99.7 5.7E-20 1.9E-24 186.9 -7.0 223 129-376 128-370 (472)
96 2cul_A Glucose-inhibited divis 99.6 1.2E-14 4.2E-19 133.4 16.3 155 208-376 4-229 (232)
97 3fpz_A Thiazole biosynthetic e 99.5 1.4E-17 4.6E-22 161.6 -10.2 254 49-375 63-321 (326)
98 2gqf_A Hypothetical protein HI 99.5 1.3E-15 4.6E-20 151.3 -2.2 122 50-175 3-169 (401)
99 3k7m_X 6-hydroxy-L-nicotine ox 99.2 1.4E-12 4.8E-17 131.2 1.9 95 248-345 203-307 (431)
100 1rp0_A ARA6, thiazole biosynth 99.2 7.9E-11 2.7E-15 111.4 11.2 164 208-376 40-272 (284)
101 1kf6_A Fumarate reductase flav 99.1 9.5E-11 3.2E-15 122.3 9.3 36 51-87 5-40 (602)
102 2ywl_A Thioredoxin reductase r 99.1 1.3E-10 4.3E-15 102.0 8.7 107 52-175 2-111 (180)
103 2bry_A NEDD9 interacting prote 99.1 1.6E-11 5.6E-16 125.4 0.7 169 4-175 23-231 (497)
104 2zxi_A TRNA uridine 5-carboxym 99.0 1.4E-09 4.6E-14 112.1 13.2 160 50-237 26-219 (637)
105 1chu_A Protein (L-aspartate ox 99.0 1.2E-09 4.1E-14 112.5 10.4 35 50-88 7-41 (540)
106 3dme_A Conserved exported prot 99.0 2.8E-09 9.5E-14 104.4 12.6 68 248-317 149-219 (369)
107 4dgk_A Phytoene dehydrogenase; 99.0 9.3E-10 3.2E-14 112.8 8.5 57 249-306 221-277 (501)
108 3v76_A Flavoprotein; structura 98.9 8.6E-10 3E-14 109.8 6.5 124 47-174 23-187 (417)
109 3pl8_A Pyranose 2-oxidase; sub 98.9 2E-12 6.8E-17 135.4 -13.6 67 260-326 271-347 (623)
110 2bry_A NEDD9 interacting prote 98.9 6.3E-10 2.1E-14 113.6 4.7 147 162-309 37-232 (497)
111 2cul_A Glucose-inhibited divis 98.9 2.4E-09 8.3E-14 97.9 7.8 117 50-175 2-126 (232)
112 3ces_A MNMG, tRNA uridine 5-ca 98.9 3.9E-09 1.3E-13 109.0 9.8 160 50-237 27-220 (651)
113 3alj_A 2-methyl-3-hydroxypyrid 98.8 4.7E-09 1.6E-13 103.5 8.2 121 50-175 10-161 (379)
114 3nlc_A Uncharacterized protein 98.8 7.6E-09 2.6E-13 106.0 9.7 124 49-175 105-278 (549)
115 3nix_A Flavoprotein/dehydrogen 98.8 4.2E-08 1.4E-12 98.0 14.2 67 250-318 107-175 (421)
116 3pvc_A TRNA 5-methylaminomethy 98.8 1.3E-07 4.6E-12 100.5 18.7 65 249-316 412-477 (689)
117 2e4g_A Tryptophan halogenase; 98.8 2.3E-08 7.9E-13 103.5 11.8 59 249-308 194-253 (550)
118 2i0z_A NAD(FAD)-utilizing dehy 98.8 7.4E-09 2.5E-13 104.4 7.4 123 49-174 24-191 (447)
119 2gag_B Heterotetrameric sarcos 98.8 1.9E-07 6.5E-12 92.6 17.5 65 249-316 174-238 (405)
120 1s3e_A Amine oxidase [flavin-c 98.8 8.7E-09 3E-13 106.1 8.0 53 252-306 215-267 (520)
121 1d4d_A Flavocytochrome C fumar 98.8 1.3E-07 4.3E-12 98.3 16.8 61 248-308 254-318 (572)
122 3ps9_A TRNA 5-methylaminomethy 98.8 1.9E-07 6.7E-12 99.0 18.0 58 249-308 417-474 (676)
123 1yvv_A Amine oxidase, flavin-c 98.7 2.9E-08 1E-12 95.9 10.1 119 51-173 2-161 (336)
124 3axb_A Putative oxidoreductase 98.7 2.2E-08 7.5E-13 101.0 9.5 66 249-316 181-262 (448)
125 2vou_A 2,6-dihydroxypyridine h 98.7 5.2E-08 1.8E-12 96.6 11.4 124 49-175 3-154 (397)
126 3dje_A Fructosyl amine: oxygen 98.7 2.4E-07 8.2E-12 93.1 16.2 58 249-307 161-221 (438)
127 2x3n_A Probable FAD-dependent 98.7 1.3E-08 4.3E-13 101.1 6.4 123 50-175 5-167 (399)
128 3i3l_A Alkylhalidase CMLS; fla 98.7 2.7E-08 9.3E-13 103.3 9.0 123 49-174 21-188 (591)
129 3nlc_A Uncharacterized protein 98.7 7.1E-08 2.4E-12 98.8 11.9 111 207-318 107-290 (549)
130 3fmw_A Oxygenase; mithramycin, 98.7 1.7E-08 5.8E-13 104.6 6.8 122 50-174 48-207 (570)
131 4a9w_A Monooxygenase; baeyer-v 98.7 2.7E-07 9.3E-12 89.6 14.7 97 208-306 4-131 (357)
132 2xdo_A TETX2 protein; tetracyc 98.7 1.6E-07 5.4E-12 93.2 13.0 122 49-175 24-183 (398)
133 3qj4_A Renalase; FAD/NAD(P)-bi 98.6 7.5E-08 2.6E-12 93.4 9.2 118 52-172 2-163 (342)
134 3cgv_A Geranylgeranyl reductas 98.6 4.4E-08 1.5E-12 96.9 7.7 121 51-174 4-162 (397)
135 2gf3_A MSOX, monomeric sarcosi 98.6 2.9E-07 1E-11 90.7 13.5 79 231-316 135-213 (389)
136 1rp0_A ARA6, thiazole biosynth 98.6 5.4E-08 1.8E-12 91.8 7.7 122 50-175 38-192 (284)
137 3nrn_A Uncharacterized protein 98.6 7.4E-08 2.5E-12 96.3 8.2 57 248-308 188-244 (421)
138 3ihg_A RDME; flavoenzyme, anth 98.6 7.5E-08 2.6E-12 99.4 8.3 38 49-89 3-40 (535)
139 3nyc_A D-arginine dehydrogenas 98.6 1.9E-08 6.3E-13 99.0 3.5 64 249-316 154-217 (381)
140 3e1t_A Halogenase; flavoprotei 98.6 5.5E-08 1.9E-12 99.8 6.9 124 49-175 5-173 (512)
141 1y56_B Sarcosine oxidase; dehy 98.6 3.7E-08 1.3E-12 97.1 5.0 46 128-174 157-205 (382)
142 3lzw_A Ferredoxin--NADP reduct 98.5 3E-07 1E-11 88.4 11.0 100 208-309 8-128 (332)
143 3oz2_A Digeranylgeranylglycero 98.5 4.2E-08 1.4E-12 96.9 5.0 37 50-89 3-39 (397)
144 1ryi_A Glycine oxidase; flavop 98.5 9.1E-08 3.1E-12 94.2 7.2 37 49-88 15-51 (382)
145 3rp8_A Flavoprotein monooxygen 98.5 6.2E-08 2.1E-12 96.4 6.0 125 48-175 20-182 (407)
146 3v76_A Flavoprotein; structura 98.5 5.1E-07 1.7E-11 89.7 12.4 100 206-308 26-188 (417)
147 2qa1_A PGAE, polyketide oxygen 98.5 6.1E-08 2.1E-12 99.0 5.8 121 48-174 8-165 (500)
148 1qo8_A Flavocytochrome C3 fuma 98.5 1.1E-07 3.7E-12 98.8 6.8 38 49-89 119-156 (566)
149 1y0p_A Fumarate reductase flav 98.5 1.5E-07 5.3E-12 97.8 8.0 37 50-89 125-161 (571)
150 2qa2_A CABE, polyketide oxygen 98.5 1.6E-07 5.5E-12 95.8 7.9 123 49-174 10-166 (499)
151 2yqu_A 2-oxoglutarate dehydrog 98.5 1.5E-07 5E-12 95.2 7.5 99 50-176 166-266 (455)
152 3klj_A NAD(FAD)-dependent dehy 98.5 1.8E-07 6.1E-12 92.2 7.8 101 206-310 8-119 (385)
153 2gmh_A Electron transfer flavo 98.5 3.2E-07 1.1E-11 95.4 10.1 37 50-89 34-76 (584)
154 3atr_A Conserved archaeal prot 98.5 3.3E-08 1.1E-12 99.8 2.5 123 50-175 5-163 (453)
155 3ab1_A Ferredoxin--NADP reduct 98.5 1.3E-06 4.3E-11 85.3 13.8 99 207-306 14-130 (360)
156 3itj_A Thioredoxin reductase 1 98.5 6.5E-07 2.2E-11 86.3 11.3 101 206-309 21-144 (338)
157 4ap3_A Steroid monooxygenase; 98.5 2.1E-06 7.1E-11 88.5 15.6 102 208-309 22-163 (549)
158 2zbw_A Thioredoxin reductase; 98.5 1.1E-06 3.8E-11 84.7 12.6 97 208-306 6-120 (335)
159 1k0i_A P-hydroxybenzoate hydro 98.5 2.1E-07 7.1E-12 92.1 7.5 120 51-175 2-164 (394)
160 3sx6_A Sulfide-quinone reducta 98.5 2.3E-07 8E-12 93.1 7.7 100 208-312 5-117 (437)
161 3alj_A 2-methyl-3-hydroxypyrid 98.4 1.4E-06 4.9E-11 85.5 13.1 97 207-308 11-161 (379)
162 3gwf_A Cyclohexanone monooxyge 98.4 2E-06 6.8E-11 88.5 14.5 101 208-308 9-150 (540)
163 3f8d_A Thioredoxin reductase ( 98.4 1.4E-06 4.6E-11 83.4 12.3 100 208-310 16-128 (323)
164 2uzz_A N-methyl-L-tryptophan o 98.4 3.7E-07 1.3E-11 89.5 8.4 35 51-88 2-36 (372)
165 2gqf_A Hypothetical protein HI 98.4 1.7E-06 5.7E-11 85.6 13.0 99 208-308 5-169 (401)
166 1fl2_A Alkyl hydroperoxide red 98.4 1.3E-06 4.5E-11 83.2 11.8 101 209-309 3-117 (310)
167 4hb9_A Similarities with proba 98.4 4.3E-07 1.5E-11 90.1 7.7 35 52-89 2-36 (412)
168 3hyw_A Sulfide-quinone reducta 98.4 4.6E-07 1.6E-11 90.8 7.9 96 208-308 3-110 (430)
169 2gqw_A Ferredoxin reductase; f 98.4 5.5E-07 1.9E-11 89.5 8.4 96 51-175 145-240 (408)
170 1qo8_A Flavocytochrome C3 fuma 98.4 1.6E-06 5.6E-11 89.9 12.3 141 168-308 78-313 (566)
171 3cp8_A TRNA uridine 5-carboxym 98.4 3.3E-07 1.1E-11 94.7 6.8 161 49-236 19-213 (641)
172 3fbs_A Oxidoreductase; structu 98.4 1.9E-06 6.6E-11 81.2 11.4 99 208-309 3-114 (297)
173 2q0l_A TRXR, thioredoxin reduc 98.4 2.5E-06 8.5E-11 81.2 11.9 98 209-309 3-116 (311)
174 2v3a_A Rubredoxin reductase; a 98.3 7.3E-07 2.5E-11 87.9 8.2 98 51-175 145-244 (384)
175 2q7v_A Thioredoxin reductase; 98.3 2.9E-06 9.9E-11 81.4 12.2 100 208-309 9-125 (325)
176 2xve_A Flavin-containing monoo 98.3 3.4E-06 1.1E-10 85.2 13.1 103 208-310 3-171 (464)
177 2r9z_A Glutathione amide reduc 98.3 5.6E-07 1.9E-11 91.0 7.3 99 50-176 165-266 (463)
178 2i0z_A NAD(FAD)-utilizing dehy 98.3 4.1E-06 1.4E-10 84.2 13.5 99 208-307 27-191 (447)
179 1ges_A Glutathione reductase; 98.3 5.8E-07 2E-11 90.5 7.2 98 50-175 166-266 (450)
180 3oz2_A Digeranylgeranylglycero 98.3 5.3E-06 1.8E-10 81.6 14.0 98 209-307 6-162 (397)
181 3uox_A Otemo; baeyer-villiger 98.3 1.6E-06 5.6E-11 89.2 10.5 101 208-308 10-150 (545)
182 3vrd_B FCCB subunit, flavocyto 98.3 7.2E-07 2.5E-11 88.4 7.6 100 207-311 2-112 (401)
183 2oln_A NIKD protein; flavoprot 98.3 1.7E-06 5.7E-11 85.6 10.2 35 51-88 4-38 (397)
184 3kkj_A Amine oxidase, flavin-c 98.3 4.1E-07 1.4E-11 84.7 5.5 37 50-89 1-37 (336)
185 3h8l_A NADH oxidase; membrane 98.3 4.7E-07 1.6E-11 90.1 6.1 98 208-310 2-116 (409)
186 1lvl_A Dihydrolipoamide dehydr 98.3 4.6E-07 1.6E-11 91.5 5.9 97 50-176 170-270 (458)
187 1vdc_A NTR, NADPH dependent th 98.3 2.5E-06 8.7E-11 82.0 11.0 98 208-309 9-126 (333)
188 4at0_A 3-ketosteroid-delta4-5a 98.3 1.2E-06 4E-11 89.8 9.0 37 50-89 40-76 (510)
189 2eq6_A Pyruvate dehydrogenase 98.3 6.2E-07 2.1E-11 90.7 6.8 98 50-175 168-272 (464)
190 4eqs_A Coenzyme A disulfide re 98.3 1.4E-06 4.9E-11 87.3 9.2 95 51-175 147-241 (437)
191 3d1c_A Flavin-containing putat 98.3 6.8E-06 2.3E-10 80.2 13.9 98 208-308 5-144 (369)
192 4fk1_A Putative thioredoxin re 98.3 4.5E-06 1.5E-10 79.3 12.1 100 209-309 8-119 (304)
193 3ef6_A Toluene 1,2-dioxygenase 98.3 3.9E-06 1.3E-10 83.4 12.1 99 208-310 3-114 (410)
194 1q1r_A Putidaredoxin reductase 98.3 2.3E-06 7.8E-11 85.7 10.5 102 207-312 4-119 (431)
195 1xhc_A NADH oxidase /nitrite r 98.3 8.7E-07 3E-11 86.7 7.2 99 206-310 7-116 (367)
196 3fg2_P Putative rubredoxin red 98.3 1.5E-06 5E-11 86.3 8.9 97 208-309 2-112 (404)
197 3c96_A Flavin-containing monoo 98.3 3.8E-07 1.3E-11 90.8 4.5 36 50-88 3-39 (410)
198 2aqj_A Tryptophan halogenase, 98.3 5E-07 1.7E-11 93.3 5.4 45 130-175 175-223 (538)
199 1onf_A GR, grase, glutathione 98.3 1.3E-06 4.6E-11 89.1 8.5 98 51-176 176-277 (500)
200 3lxd_A FAD-dependent pyridine 98.3 1.4E-06 4.9E-11 86.7 8.4 98 51-175 152-252 (415)
201 2x3n_A Probable FAD-dependent 98.3 4.9E-06 1.7E-10 82.3 12.3 100 208-308 7-167 (399)
202 1nhp_A NADH peroxidase; oxidor 98.3 1.1E-06 3.6E-11 88.6 7.1 98 50-175 148-247 (447)
203 3h28_A Sulfide-quinone reducta 98.3 5.7E-07 1.9E-11 90.1 5.0 98 208-310 3-112 (430)
204 1hyu_A AHPF, alkyl hydroperoxi 98.2 5.4E-06 1.8E-10 85.0 12.1 103 207-309 212-328 (521)
205 1y0p_A Fumarate reductase flav 98.2 8.1E-06 2.8E-10 84.8 13.5 100 208-307 127-317 (571)
206 2hqm_A GR, grase, glutathione 98.2 1.3E-06 4.4E-11 88.7 7.3 99 50-176 184-287 (479)
207 1ebd_A E3BD, dihydrolipoamide 98.2 8.4E-07 2.9E-11 89.5 5.8 98 50-175 169-271 (455)
208 2wpf_A Trypanothione reductase 98.2 1.5E-06 5.1E-11 88.6 7.5 98 50-175 190-293 (495)
209 3ics_A Coenzyme A-disulfide re 98.2 1.4E-06 4.8E-11 90.9 7.5 98 50-175 186-283 (588)
210 2qcu_A Aerobic glycerol-3-phos 98.2 2.9E-06 9.8E-11 86.7 9.4 35 50-87 2-36 (501)
211 1fec_A Trypanothione reductase 98.2 1.6E-06 5.5E-11 88.3 7.4 99 50-176 186-290 (490)
212 1trb_A Thioredoxin reductase; 98.2 6.9E-06 2.4E-10 78.4 11.4 99 208-310 6-119 (320)
213 2gv8_A Monooxygenase; FMO, FAD 98.2 6.5E-06 2.2E-10 82.8 11.6 102 206-309 5-181 (447)
214 2a87_A TRXR, TR, thioredoxin r 98.2 5.5E-06 1.9E-10 79.8 10.5 99 207-309 14-128 (335)
215 2wdq_A Succinate dehydrogenase 98.2 1.5E-06 5E-11 90.4 6.7 35 51-88 7-41 (588)
216 4b1b_A TRXR, thioredoxin reduc 98.2 2.7E-06 9.1E-11 87.2 8.5 99 48-175 220-320 (542)
217 1mo9_A ORF3; nucleotide bindin 98.2 2E-06 6.9E-11 88.3 7.4 96 52-175 215-317 (523)
218 3jsk_A Cypbp37 protein; octame 98.2 1.9E-06 6.4E-11 82.4 6.6 37 50-89 78-116 (344)
219 1ojt_A Surface protein; redox- 98.2 1.1E-06 3.8E-11 89.3 5.4 98 50-175 184-287 (482)
220 2vou_A 2,6-dihydroxypyridine h 98.2 8.1E-06 2.8E-10 80.7 11.4 100 207-308 5-154 (397)
221 3c4n_A Uncharacterized protein 98.2 5.6E-07 1.9E-11 89.4 2.8 35 50-87 35-71 (405)
222 1v59_A Dihydrolipoamide dehydr 98.2 1.6E-06 5.4E-11 88.1 6.1 99 50-176 182-289 (478)
223 1k0i_A P-hydroxybenzoate hydro 98.2 1.1E-05 3.8E-10 79.6 12.0 101 208-309 3-165 (394)
224 1yvv_A Amine oxidase, flavin-c 98.2 2E-05 7E-10 75.7 13.6 98 208-308 3-163 (336)
225 3cty_A Thioredoxin reductase; 98.2 1.2E-05 3.9E-10 76.9 11.6 99 207-309 16-128 (319)
226 3kd9_A Coenzyme A disulfide re 98.2 4.3E-06 1.5E-10 84.1 9.0 100 207-310 3-117 (449)
227 1zmd_A Dihydrolipoyl dehydroge 98.2 2.3E-06 7.8E-11 86.8 6.9 99 50-175 177-283 (474)
228 1ryi_A Glycine oxidase; flavop 98.1 1.2E-05 4.2E-10 78.8 11.9 62 251-316 166-227 (382)
229 2a8x_A Dihydrolipoyl dehydroge 98.1 2E-06 6.9E-11 86.9 6.4 98 50-175 170-272 (464)
230 1w4x_A Phenylacetone monooxyge 98.1 3.1E-05 1.1E-09 79.8 15.3 99 208-306 17-153 (542)
231 1xdi_A RV3303C-LPDA; reductase 98.1 4E-06 1.4E-10 85.6 8.5 99 50-176 181-281 (499)
232 2dkh_A 3-hydroxybenzoate hydro 98.1 1.5E-06 5.2E-11 91.4 5.5 37 50-89 31-68 (639)
233 2bc0_A NADH oxidase; flavoprot 98.1 3.4E-06 1.2E-10 85.8 7.9 99 49-175 192-292 (490)
234 4a5l_A Thioredoxin reductase; 98.1 1.2E-05 4.3E-10 76.4 11.1 100 208-310 5-124 (314)
235 2h88_A Succinate dehydrogenase 98.1 3E-06 1E-10 88.3 7.3 35 50-87 17-51 (621)
236 2qae_A Lipoamide, dihydrolipoy 98.1 3.2E-06 1.1E-10 85.6 7.1 98 50-175 173-277 (468)
237 3ces_A MNMG, tRNA uridine 5-ca 98.1 2.1E-05 7.3E-10 81.3 12.9 99 208-308 29-182 (651)
238 2r0c_A REBC; flavin adenine di 98.1 3E-06 1E-10 87.5 6.7 36 51-89 26-61 (549)
239 2weu_A Tryptophan 5-halogenase 98.1 4.8E-06 1.6E-10 85.3 8.2 45 130-175 183-231 (511)
240 3s5w_A L-ornithine 5-monooxyge 98.1 6.4E-06 2.2E-10 83.2 8.9 102 209-310 32-195 (463)
241 3oc4_A Oxidoreductase, pyridin 98.1 5.8E-06 2E-10 83.3 8.5 101 208-310 3-118 (452)
242 1y56_B Sarcosine oxidase; dehy 98.1 2.2E-05 7.6E-10 77.0 12.6 61 253-316 153-213 (382)
243 2zxi_A TRNA uridine 5-carboxym 98.1 2.2E-05 7.6E-10 80.9 12.8 99 208-308 28-181 (637)
244 3da1_A Glycerol-3-phosphate de 98.1 6.4E-06 2.2E-10 85.2 8.8 36 49-87 16-51 (561)
245 2cdu_A NADPH oxidase; flavoenz 98.1 4.1E-06 1.4E-10 84.4 7.2 99 50-175 148-248 (452)
246 1pj5_A N,N-dimethylglycine oxi 98.1 3.3E-06 1.1E-10 91.7 6.9 37 50-88 3-39 (830)
247 3o0h_A Glutathione reductase; 98.1 6E-06 2E-10 84.0 8.3 98 50-175 190-289 (484)
248 1dxl_A Dihydrolipoamide dehydr 98.1 2.7E-06 9.1E-11 86.2 5.7 98 50-175 176-280 (470)
249 3r9u_A Thioredoxin reductase; 98.1 1.2E-05 4.2E-10 76.3 9.9 99 207-310 4-121 (315)
250 4hb9_A Similarities with proba 98.1 2.5E-05 8.5E-10 77.2 12.4 99 209-308 3-167 (412)
251 2bs2_A Quinol-fumarate reducta 98.1 4.6E-06 1.6E-10 87.6 7.2 36 50-88 4-39 (660)
252 3gyx_A Adenylylsulfate reducta 98.1 5.9E-06 2E-10 86.7 8.0 36 50-88 21-62 (662)
253 3cgb_A Pyridine nucleotide-dis 98.1 3.9E-06 1.3E-10 85.2 6.3 97 50-175 185-283 (480)
254 3iwa_A FAD-dependent pyridine 98.1 9.4E-06 3.2E-10 82.2 9.2 101 208-310 4-128 (472)
255 3ntd_A FAD-dependent pyridine 98.1 5.9E-06 2E-10 85.7 7.9 98 50-175 150-268 (565)
256 3cgv_A Geranylgeranyl reductas 98.1 2.3E-05 7.8E-10 77.2 11.7 98 209-307 6-162 (397)
257 3atr_A Conserved archaeal prot 98.1 2.4E-05 8.1E-10 78.8 12.0 100 208-308 7-163 (453)
258 2gmh_A Electron transfer flavo 98.0 4.6E-05 1.6E-09 79.1 14.2 101 208-308 36-218 (584)
259 3ic9_A Dihydrolipoamide dehydr 98.0 6.1E-06 2.1E-10 84.0 7.1 97 50-175 173-275 (492)
260 1zk7_A HGII, reductase, mercur 98.0 6.6E-06 2.3E-10 83.2 7.1 96 50-175 175-272 (467)
261 4gcm_A TRXR, thioredoxin reduc 98.0 3.9E-05 1.3E-09 73.0 12.1 98 209-310 8-119 (312)
262 3cp8_A TRNA uridine 5-carboxym 98.0 3.3E-05 1.1E-09 79.9 12.0 101 206-308 20-175 (641)
263 3i3l_A Alkylhalidase CMLS; fla 98.0 4E-05 1.4E-09 79.5 12.6 100 207-307 23-188 (591)
264 2gjc_A Thiazole biosynthetic e 98.0 1.1E-05 3.6E-10 76.7 7.5 37 50-89 64-102 (326)
265 4dna_A Probable glutathione re 98.0 8.7E-06 3E-10 82.2 7.3 97 50-175 169-269 (463)
266 3e1t_A Halogenase; flavoprotei 98.0 5.2E-05 1.8E-09 77.5 13.1 100 208-308 8-173 (512)
267 3lad_A Dihydrolipoamide dehydr 98.0 8.5E-06 2.9E-10 82.6 7.2 100 49-176 178-282 (476)
268 2uzz_A N-methyl-L-tryptophan o 98.0 5.8E-05 2E-09 73.6 12.8 54 251-307 151-204 (372)
269 3qj4_A Renalase; FAD/NAD(P)-bi 98.0 4.2E-05 1.4E-09 73.8 11.6 95 209-305 3-163 (342)
270 3urh_A Dihydrolipoyl dehydroge 98.0 8.1E-06 2.8E-10 83.1 6.5 99 49-175 196-301 (491)
271 1m6i_A Programmed cell death p 97.9 1.4E-05 4.7E-10 81.4 8.0 101 51-175 180-283 (493)
272 2vdc_G Glutamate synthase [NAD 97.9 7.3E-06 2.5E-10 82.4 5.6 90 206-306 121-218 (456)
273 3rp8_A Flavoprotein monooxygen 97.9 5.2E-05 1.8E-09 75.1 11.7 100 206-309 22-183 (407)
274 3dgh_A TRXR-1, thioredoxin red 97.9 9.4E-06 3.2E-10 82.4 6.3 97 50-175 186-290 (483)
275 2xdo_A TETX2 protein; tetracyc 97.9 3.6E-05 1.2E-09 76.1 10.1 100 207-308 26-183 (398)
276 3dk9_A Grase, GR, glutathione 97.9 9.3E-06 3.2E-10 82.4 5.9 99 50-176 186-295 (478)
277 3ihg_A RDME; flavoenzyme, anth 97.9 5.6E-05 1.9E-09 77.8 11.7 99 208-307 6-183 (535)
278 2gjc_A Thiazole biosynthetic e 97.9 0.0001 3.4E-09 70.0 12.2 101 208-308 66-240 (326)
279 3fmw_A Oxygenase; mithramycin, 97.9 5.1E-05 1.8E-09 78.5 11.0 98 208-307 50-207 (570)
280 4gde_A UDP-galactopyranose mut 97.9 7.4E-06 2.5E-10 83.8 4.3 52 250-305 223-274 (513)
281 2aqj_A Tryptophan halogenase, 97.9 0.00019 6.4E-09 73.9 14.9 56 253-309 169-224 (538)
282 3dgz_A Thioredoxin reductase 2 97.9 1.8E-05 6.3E-10 80.4 7.1 97 50-175 184-288 (488)
283 4gut_A Lysine-specific histone 97.9 6.5E-05 2.2E-09 80.2 11.5 38 49-89 334-371 (776)
284 1pn0_A Phenol 2-monooxygenase; 97.8 1E-05 3.5E-10 85.3 4.6 35 51-88 8-47 (665)
285 4at0_A 3-ketosteroid-delta4-5a 97.8 0.00015 5.3E-09 74.0 13.2 58 250-307 203-264 (510)
286 4g6h_A Rotenone-insensitive NA 97.8 1.8E-05 6.1E-10 80.6 6.1 101 207-310 42-172 (502)
287 3l8k_A Dihydrolipoyl dehydroge 97.8 3.7E-05 1.3E-09 77.7 8.1 98 208-310 5-147 (466)
288 3jsk_A Cypbp37 protein; octame 97.8 0.00016 5.6E-09 69.0 11.8 139 207-345 79-304 (344)
289 2qa2_A CABE, polyketide oxygen 97.8 0.00021 7.1E-09 72.7 13.1 100 206-307 11-166 (499)
290 3i6d_A Protoporphyrinogen oxid 97.8 1.1E-05 3.7E-10 81.5 3.6 41 264-306 248-288 (470)
291 1c0p_A D-amino acid oxidase; a 97.8 2.3E-05 7.7E-10 76.4 5.6 37 48-87 3-39 (363)
292 3c96_A Flavin-containing monoo 97.7 0.00014 4.7E-09 72.1 11.3 98 208-308 5-170 (410)
293 1y56_A Hypothetical protein PH 97.7 4.7E-05 1.6E-09 77.4 7.2 101 207-310 108-222 (493)
294 3c4n_A Uncharacterized protein 97.7 6.5E-05 2.2E-09 74.4 8.0 63 251-317 174-246 (405)
295 2qa1_A PGAE, polyketide oxygen 97.7 0.00022 7.6E-09 72.5 12.1 100 206-307 10-165 (500)
296 3qfa_A Thioredoxin reductase 1 97.7 5.5E-05 1.9E-09 77.5 7.4 97 50-175 209-316 (519)
297 2e1m_A L-glutamate oxidase; L- 97.7 4.1E-05 1.4E-09 74.5 6.1 39 48-89 41-80 (376)
298 3ihm_A Styrene monooxygenase A 97.7 2.6E-05 8.8E-10 77.9 4.8 35 50-87 21-55 (430)
299 2oln_A NIKD protein; flavoprot 97.7 0.00042 1.4E-08 68.2 13.1 59 254-316 158-216 (397)
300 1pj5_A N,N-dimethylglycine oxi 97.6 0.00032 1.1E-08 76.1 12.9 55 251-307 153-207 (830)
301 2b9w_A Putative aminooxidase; 97.6 4.9E-05 1.7E-09 75.7 6.1 54 250-306 204-257 (424)
302 2weu_A Tryptophan 5-halogenase 97.6 0.00046 1.6E-08 70.4 13.4 55 253-308 177-231 (511)
303 3nks_A Protoporphyrinogen oxid 97.6 3.9E-05 1.3E-09 77.7 5.3 55 250-306 235-289 (477)
304 3k30_A Histamine dehydrogenase 97.6 5.4E-05 1.9E-09 80.3 6.5 99 50-175 522-625 (690)
305 3ka7_A Oxidoreductase; structu 97.6 0.00059 2E-08 67.7 13.6 51 256-308 203-253 (425)
306 1rsg_A FMS1 protein; FAD bindi 97.6 3.1E-05 1E-09 79.4 4.2 38 50-90 7-45 (516)
307 2pyx_A Tryptophan halogenase; 97.6 0.00037 1.3E-08 71.5 12.3 55 253-308 179-234 (526)
308 2bcg_G Secretory pathway GDP d 97.6 5.3E-05 1.8E-09 76.2 5.8 59 249-308 242-301 (453)
309 1v0j_A UDP-galactopyranose mut 97.6 5.4E-05 1.9E-09 74.7 5.7 38 50-90 6-44 (399)
310 1gte_A Dihydropyrimidine dehyd 97.6 3.7E-05 1.3E-09 85.1 4.9 93 207-308 187-289 (1025)
311 1cjc_A Protein (adrenodoxin re 97.6 3.1E-05 1.1E-09 78.0 3.9 91 206-307 5-106 (460)
312 2yg5_A Putrescine oxidase; oxi 97.6 3.3E-05 1.1E-09 77.6 4.1 37 50-89 4-40 (453)
313 3ka7_A Oxidoreductase; structu 97.6 5E-05 1.7E-09 75.6 5.3 35 52-89 1-35 (425)
314 2x8g_A Thioredoxin glutathione 97.6 0.00011 3.8E-09 76.6 8.1 97 50-175 285-396 (598)
315 2gag_A Heterotetrameric sarcos 97.6 0.00029 1E-08 77.4 11.7 101 207-309 128-255 (965)
316 2jae_A L-amino acid oxidase; o 97.5 7.5E-05 2.6E-09 75.9 6.0 39 49-90 9-47 (489)
317 3hdq_A UDP-galactopyranose mut 97.5 8E-05 2.8E-09 73.0 5.7 40 48-90 26-65 (397)
318 1lqt_A FPRA; NADP+ derivative, 97.5 2.7E-05 9.3E-10 78.3 2.3 89 207-306 3-107 (456)
319 2pyx_A Tryptophan halogenase; 97.5 7.5E-05 2.6E-09 76.6 5.2 44 131-175 186-234 (526)
320 3lov_A Protoporphyrinogen oxid 97.5 8E-05 2.7E-09 75.3 5.2 39 50-89 3-41 (475)
321 1ps9_A 2,4-dienoyl-COA reducta 97.5 0.00014 4.9E-09 76.8 7.1 87 207-310 373-470 (671)
322 2qcu_A Aerobic glycerol-3-phos 97.5 0.00095 3.3E-08 67.9 12.8 56 251-308 151-211 (501)
323 2wdq_A Succinate dehydrogenase 97.4 0.0014 4.8E-08 68.0 14.2 52 255-306 149-205 (588)
324 4dsg_A UDP-galactopyranose mut 97.4 0.00012 4E-09 74.3 5.7 39 49-89 7-45 (484)
325 3c4a_A Probable tryptophan hyd 97.4 0.0001 3.6E-09 72.2 5.1 35 52-89 1-37 (381)
326 2ivd_A PPO, PPOX, protoporphyr 97.4 0.0001 3.5E-09 74.6 5.0 38 49-89 14-51 (478)
327 3g3e_A D-amino-acid oxidase; F 97.4 8.7E-05 3E-09 71.8 4.1 36 52-87 1-39 (351)
328 3da1_A Glycerol-3-phosphate de 97.4 0.001 3.4E-08 68.7 12.2 61 254-316 175-240 (561)
329 2e5v_A L-aspartate oxidase; ar 97.4 0.00092 3.1E-08 67.4 11.5 97 209-308 1-177 (472)
330 1sez_A Protoporphyrinogen oxid 97.4 0.00013 4.5E-09 74.4 5.2 38 50-90 12-49 (504)
331 2iid_A L-amino-acid oxidase; f 97.3 0.00017 5.9E-09 73.4 5.7 38 49-89 31-68 (498)
332 2vvm_A Monoamine oxidase N; FA 97.3 0.00015 5.1E-09 73.8 5.1 56 249-306 255-311 (495)
333 2bi7_A UDP-galactopyranose mut 97.3 0.00016 5.5E-09 70.9 5.2 37 51-90 3-39 (384)
334 3g5s_A Methylenetetrahydrofola 97.3 0.00021 7.3E-09 68.8 5.4 35 51-88 1-35 (443)
335 1i8t_A UDP-galactopyranose mut 97.3 0.00019 6.3E-09 70.0 4.6 35 52-89 2-36 (367)
336 1o94_A Tmadh, trimethylamine d 97.2 0.00018 6.3E-09 76.7 4.8 98 50-175 527-647 (729)
337 3c4a_A Probable tryptophan hyd 97.2 0.00026 8.7E-09 69.4 5.4 87 209-308 2-144 (381)
338 2dkh_A 3-hydroxybenzoate hydro 97.2 0.0015 5.3E-08 68.4 11.4 100 208-307 33-211 (639)
339 1kf6_A Fumarate reductase flav 97.1 0.0022 7.4E-08 66.7 11.4 96 209-305 7-195 (602)
340 1d5t_A Guanine nucleotide diss 97.1 0.00041 1.4E-08 69.2 5.7 58 249-308 234-291 (433)
341 2rgh_A Alpha-glycerophosphate 97.1 0.00024 8.3E-09 73.5 3.8 59 248-307 187-250 (571)
342 2r0c_A REBC; flavin adenine di 97.1 0.0028 9.6E-08 65.2 11.5 95 208-307 27-196 (549)
343 3p1w_A Rabgdi protein; GDI RAB 97.0 0.00048 1.6E-08 69.0 5.1 58 249-306 256-313 (475)
344 3ayj_A Pro-enzyme of L-phenyla 97.0 0.00027 9.4E-09 74.1 3.4 39 51-89 56-100 (721)
345 2rgh_A Alpha-glycerophosphate 97.0 0.0081 2.8E-07 62.0 13.9 35 206-240 31-65 (571)
346 1chu_A Protein (L-aspartate ox 97.0 0.002 6.8E-08 66.1 9.2 32 208-240 9-40 (540)
347 1jnr_A Adenylylsulfate reducta 97.0 0.00042 1.4E-08 72.8 4.1 36 50-88 21-60 (643)
348 2h88_A Succinate dehydrogenase 96.9 0.0053 1.8E-07 63.8 12.3 51 256-307 162-217 (621)
349 2z3y_A Lysine-specific histone 96.9 0.00078 2.7E-08 71.0 5.8 38 49-89 105-142 (662)
350 2xag_A Lysine-specific histone 96.9 0.00097 3.3E-08 71.8 6.1 39 49-90 276-314 (852)
351 4gde_A UDP-galactopyranose mut 96.8 0.0016 5.5E-08 66.3 6.9 31 209-239 12-43 (513)
352 2bs2_A Quinol-fumarate reducta 96.8 0.011 3.9E-07 61.8 13.0 51 255-306 164-219 (660)
353 1b37_A Protein (polyamine oxid 96.7 0.0016 5.4E-08 65.7 5.5 41 263-305 228-268 (472)
354 1pn0_A Phenol 2-monooxygenase; 96.6 0.012 4E-07 62.0 11.7 31 209-239 10-45 (665)
355 1kdg_A CDH, cellobiose dehydro 96.6 0.0017 5.9E-08 66.8 5.1 64 254-318 201-272 (546)
356 4gut_A Lysine-specific histone 96.5 0.017 5.9E-07 61.6 12.8 42 262-305 542-583 (776)
357 3i6d_A Protoporphyrinogen oxid 96.5 0.014 4.9E-07 58.3 11.4 35 208-242 6-46 (470)
358 1ju2_A HydroxynitrIle lyase; f 96.5 0.0011 3.9E-08 67.8 2.9 59 259-317 204-271 (536)
359 1jnr_A Adenylylsulfate reducta 96.4 0.023 7.8E-07 59.5 12.5 49 258-306 160-217 (643)
360 3t37_A Probable dehydrogenase; 96.3 0.0023 7.9E-08 65.4 3.9 58 260-318 222-282 (526)
361 3q9t_A Choline dehydrogenase a 96.2 0.0025 8.6E-08 65.7 4.0 58 260-317 217-280 (577)
362 3gyx_A Adenylylsulfate reducta 96.1 0.019 6.4E-07 60.2 9.9 51 255-305 172-231 (662)
363 3qvp_A Glucose oxidase; oxidor 96.0 0.004 1.4E-07 64.1 4.1 66 252-317 230-303 (583)
364 4b63_A L-ornithine N5 monooxyg 96.0 0.039 1.3E-06 55.9 11.2 61 250-310 146-217 (501)
365 1n4w_A CHOD, cholesterol oxida 96.0 0.0054 1.9E-07 62.3 4.9 58 259-316 231-297 (504)
366 1coy_A Cholesterol oxidase; ox 95.8 0.0066 2.2E-07 61.7 4.9 63 254-316 232-302 (507)
367 3p1w_A Rabgdi protein; GDI RAB 95.8 0.018 6.3E-07 57.5 7.9 40 48-90 17-56 (475)
368 3kkj_A Amine oxidase, flavin-c 95.8 0.0092 3.1E-07 54.5 5.3 34 209-242 4-37 (336)
369 3lk7_A UDP-N-acetylmuramoylala 95.7 0.0099 3.4E-07 59.4 5.7 82 206-312 8-89 (451)
370 1gpe_A Protein (glucose oxidas 95.7 0.0073 2.5E-07 62.5 4.5 61 257-317 239-307 (587)
371 2jbv_A Choline oxidase; alcoho 95.7 0.0066 2.3E-07 62.3 4.2 64 254-317 214-283 (546)
372 3fwz_A Inner membrane protein 95.6 0.013 4.4E-07 48.1 5.1 37 48-87 4-40 (140)
373 3fim_B ARYL-alcohol oxidase; A 95.5 0.0056 1.9E-07 62.9 2.9 67 251-317 210-286 (566)
374 3eag_A UDP-N-acetylmuramate:L- 95.4 0.02 6.8E-07 54.5 6.2 80 206-312 3-83 (326)
375 3dfz_A SIRC, precorrin-2 dehyd 95.2 0.019 6.4E-07 51.1 4.9 107 206-344 30-141 (223)
376 1id1_A Putative potassium chan 95.1 0.028 9.5E-07 46.8 5.5 34 50-86 2-35 (153)
377 2g1u_A Hypothetical protein TM 95.1 0.024 8.3E-07 47.3 5.1 36 49-87 17-52 (155)
378 4dgk_A Phytoene dehydrogenase; 95.0 0.016 5.6E-07 58.6 4.6 36 208-243 2-37 (501)
379 3llv_A Exopolyphosphatase-rela 95.0 0.022 7.6E-07 46.6 4.5 34 51-87 6-39 (141)
380 3ic5_A Putative saccharopine d 94.4 0.036 1.2E-06 43.4 4.3 33 51-86 5-38 (118)
381 1lss_A TRK system potassium up 94.3 0.048 1.6E-06 44.2 4.9 32 52-86 5-36 (140)
382 3dfz_A SIRC, precorrin-2 dehyd 93.9 0.059 2E-06 47.9 4.9 36 48-86 28-63 (223)
383 3i83_A 2-dehydropantoate 2-red 93.9 0.26 9E-06 46.5 9.8 85 208-315 3-91 (320)
384 1vg0_A RAB proteins geranylger 93.6 0.072 2.4E-06 55.1 5.7 61 248-308 377-438 (650)
385 2iid_A L-amino-acid oxidase; f 93.5 0.091 3.1E-06 53.0 6.3 39 206-244 32-70 (498)
386 3nrn_A Uncharacterized protein 93.4 0.08 2.7E-06 52.1 5.5 35 208-242 1-35 (421)
387 3c85_A Putative glutathione-re 93.3 0.083 2.8E-06 45.3 4.8 36 49-87 37-73 (183)
388 2hmt_A YUAA protein; RCK, KTN, 93.2 0.083 2.8E-06 42.9 4.5 34 51-87 6-39 (144)
389 3fpz_A Thiazole biosynthetic e 92.9 0.064 2.2E-06 50.9 3.7 65 207-271 65-138 (326)
390 1f0y_A HCDH, L-3-hydroxyacyl-C 92.9 0.12 4E-06 48.4 5.5 39 46-87 10-48 (302)
391 3ihm_A Styrene monooxygenase A 92.8 0.094 3.2E-06 51.9 4.9 33 208-240 23-55 (430)
392 4hv4_A UDP-N-acetylmuramate--L 92.7 0.12 4.1E-06 52.1 5.6 78 205-312 20-98 (494)
393 2x5o_A UDP-N-acetylmuramoylala 92.7 0.085 2.9E-06 52.3 4.5 129 51-236 5-136 (439)
394 3dme_A Conserved exported prot 92.6 0.12 4.1E-06 49.5 5.4 34 208-241 5-38 (369)
395 2x5o_A UDP-N-acetylmuramoylala 92.6 0.048 1.7E-06 54.2 2.5 78 206-312 4-81 (439)
396 3lk7_A UDP-N-acetylmuramoylala 92.6 0.11 3.8E-06 51.7 5.2 133 50-235 8-143 (451)
397 3k7m_X 6-hydroxy-L-nicotine ox 92.6 0.12 4.1E-06 51.0 5.4 34 209-242 3-36 (431)
398 1kyq_A Met8P, siroheme biosynt 92.5 0.066 2.2E-06 49.2 3.1 36 49-87 11-46 (274)
399 3fwz_A Inner membrane protein 92.5 0.32 1.1E-05 39.5 7.1 77 207-307 7-83 (140)
400 3nks_A Protoporphyrinogen oxid 92.5 0.12 4E-06 51.8 5.2 35 208-242 3-39 (477)
401 2b9w_A Putative aminooxidase; 92.4 0.14 4.8E-06 50.3 5.7 61 206-267 5-82 (424)
402 2e1m_A L-glutamate oxidase; L- 92.3 0.15 5.1E-06 49.3 5.6 37 206-242 43-80 (376)
403 4ffl_A PYLC; amino acid, biosy 92.3 0.15 5.1E-06 49.1 5.5 36 51-89 1-36 (363)
404 2vvm_A Monoamine oxidase N; FA 92.3 0.27 9.4E-06 49.4 7.7 37 51-90 39-75 (495)
405 3g5s_A Methylenetetrahydrofola 92.2 0.16 5.6E-06 49.0 5.5 33 208-240 2-34 (443)
406 3l4b_C TRKA K+ channel protien 92.1 0.12 3.9E-06 45.9 4.1 32 53-87 2-33 (218)
407 2bcg_G Secretory pathway GDP d 92.0 0.26 9E-06 49.0 7.1 39 49-90 9-47 (453)
408 1rsg_A FMS1 protein; FAD bindi 92.0 0.16 5.4E-06 51.5 5.6 36 207-242 8-44 (516)
409 1vg0_A RAB proteins geranylger 92.0 0.46 1.6E-05 49.2 8.9 39 49-90 6-44 (650)
410 3nix_A Flavoprotein/dehydrogen 91.9 0.15 5.2E-06 50.0 5.2 33 208-240 6-38 (421)
411 2gf3_A MSOX, monomeric sarcosi 91.8 0.16 5.6E-06 49.1 5.2 33 209-241 5-37 (389)
412 2jae_A L-amino acid oxidase; o 91.7 0.19 6.4E-06 50.5 5.7 38 206-243 10-47 (489)
413 3hwr_A 2-dehydropantoate 2-red 91.7 0.44 1.5E-05 44.8 7.9 87 206-314 18-105 (318)
414 1s3e_A Amine oxidase [flavin-c 91.6 0.18 6.2E-06 51.1 5.5 61 207-268 4-81 (520)
415 2ivd_A PPO, PPOX, protoporphyr 91.6 0.19 6.5E-06 50.3 5.6 38 205-242 14-51 (478)
416 2a9f_A Putative malic enzyme ( 91.5 0.19 6.5E-06 48.3 5.0 37 49-87 186-222 (398)
417 1pzg_A LDH, lactate dehydrogen 91.5 0.23 8E-06 47.1 5.7 37 49-87 7-43 (331)
418 1c0p_A D-amino acid oxidase; a 91.4 0.19 6.6E-06 48.2 5.3 33 207-239 6-38 (363)
419 2g1u_A Hypothetical protein TM 91.4 0.28 9.6E-06 40.6 5.6 37 205-241 17-53 (155)
420 1vl6_A Malate oxidoreductase; 91.4 0.2 6.8E-06 48.1 5.1 36 49-86 190-225 (388)
421 3nyc_A D-arginine dehydrogenas 91.4 0.17 5.7E-06 48.8 4.7 36 206-242 8-43 (381)
422 1d5t_A Guanine nucleotide diss 91.3 0.2 6.7E-06 49.6 5.2 39 49-90 4-42 (433)
423 1y6j_A L-lactate dehydrogenase 91.3 0.22 7.5E-06 47.0 5.3 37 50-87 6-42 (318)
424 3llv_A Exopolyphosphatase-rela 91.2 0.54 1.9E-05 38.0 7.1 33 207-239 6-38 (141)
425 4e12_A Diketoreductase; oxidor 91.2 0.24 8.2E-06 45.8 5.4 35 50-87 3-37 (283)
426 2bi7_A UDP-galactopyranose mut 91.1 0.23 7.9E-06 48.2 5.4 36 208-243 4-39 (384)
427 4dio_A NAD(P) transhydrogenase 91.1 0.24 8.1E-06 48.1 5.4 34 51-87 190-223 (405)
428 3hn2_A 2-dehydropantoate 2-red 91.1 0.38 1.3E-05 45.1 6.8 85 208-314 3-88 (312)
429 3hn7_A UDP-N-acetylmuramate-L- 90.9 0.28 9.6E-06 49.8 6.0 80 205-312 17-97 (524)
430 1jw9_B Molybdopterin biosynthe 90.7 0.25 8.5E-06 44.8 4.9 36 51-88 31-66 (249)
431 1sez_A Protoporphyrinogen oxid 90.7 0.25 8.6E-06 49.8 5.5 38 206-243 12-49 (504)
432 3tl2_A Malate dehydrogenase; c 90.7 0.29 9.9E-06 46.0 5.5 37 48-86 5-41 (315)
433 3pqe_A L-LDH, L-lactate dehydr 90.7 0.3 1E-05 46.1 5.6 37 49-86 3-39 (326)
434 3hdq_A UDP-galactopyranose mut 90.6 0.27 9.4E-06 47.8 5.4 36 207-242 29-64 (397)
435 2yg5_A Putrescine oxidase; oxi 90.6 0.26 8.8E-06 48.9 5.4 35 208-242 6-40 (453)
436 3k96_A Glycerol-3-phosphate de 90.5 0.26 9E-06 47.2 5.1 37 48-87 26-62 (356)
437 3p2y_A Alanine dehydrogenase/p 90.4 0.25 8.7E-06 47.4 4.9 35 50-87 183-217 (381)
438 3ego_A Probable 2-dehydropanto 90.3 0.7 2.4E-05 43.2 7.8 72 209-303 4-75 (307)
439 2gag_B Heterotetrameric sarcos 90.3 0.22 7.6E-06 48.4 4.5 33 208-240 22-56 (405)
440 3i83_A 2-dehydropantoate 2-red 90.3 0.28 9.7E-06 46.2 5.1 32 52-86 3-34 (320)
441 3dje_A Fructosyl amine: oxygen 90.2 0.3 1E-05 48.2 5.5 34 208-241 7-41 (438)
442 1id1_A Putative potassium chan 90.2 0.43 1.5E-05 39.4 5.6 33 207-239 3-35 (153)
443 3d0o_A L-LDH 1, L-lactate dehy 90.1 0.34 1.2E-05 45.6 5.5 37 49-86 4-40 (317)
444 3eag_A UDP-N-acetylmuramate:L- 90.0 0.34 1.2E-05 45.9 5.4 35 50-87 3-38 (326)
445 2ew2_A 2-dehydropantoate 2-red 90.0 0.4 1.4E-05 44.8 6.0 32 208-239 4-35 (316)
446 1v0j_A UDP-galactopyranose mut 89.9 0.26 8.7E-06 48.2 4.6 36 207-242 7-43 (399)
447 1pjq_A CYSG, siroheme synthase 89.8 0.27 9.2E-06 48.9 4.7 36 49-87 10-45 (457)
448 1pjq_A CYSG, siroheme synthase 89.8 0.4 1.4E-05 47.6 6.0 78 206-311 11-89 (457)
449 3ps9_A TRNA 5-methylaminomethy 89.8 0.35 1.2E-05 50.8 5.8 34 208-241 273-306 (676)
450 3fi9_A Malate dehydrogenase; s 89.6 0.43 1.5E-05 45.4 5.7 36 50-86 7-43 (343)
451 3g3e_A D-amino-acid oxidase; F 89.6 0.24 8.2E-06 47.3 4.0 32 209-240 2-39 (351)
452 3pvc_A TRNA 5-methylaminomethy 89.5 0.33 1.1E-05 51.2 5.3 35 208-242 265-299 (689)
453 3gvi_A Malate dehydrogenase; N 89.4 0.42 1.4E-05 45.0 5.5 37 49-87 5-41 (324)
454 1i8t_A UDP-galactopyranose mut 89.4 0.32 1.1E-05 46.9 4.8 34 209-242 3-36 (367)
455 2e4g_A Tryptophan halogenase; 89.4 0.38 1.3E-05 49.2 5.6 34 207-240 25-61 (550)
456 3hn2_A 2-dehydropantoate 2-red 89.3 0.32 1.1E-05 45.7 4.6 32 52-86 3-34 (312)
457 1bg6_A N-(1-D-carboxylethyl)-L 89.2 0.37 1.3E-05 46.1 5.1 33 51-86 4-36 (359)
458 3gpi_A NAD-dependent epimerase 89.2 0.43 1.5E-05 43.9 5.4 34 51-87 3-36 (286)
459 4huj_A Uncharacterized protein 89.2 0.29 1E-05 43.3 4.0 35 49-86 21-56 (220)
460 3lov_A Protoporphyrinogen oxid 89.1 0.31 1.1E-05 48.6 4.6 34 208-241 5-40 (475)
461 3rui_A Ubiquitin-like modifier 89.0 0.45 1.5E-05 44.9 5.3 37 50-88 33-69 (340)
462 2ew2_A 2-dehydropantoate 2-red 88.9 0.39 1.3E-05 44.9 5.0 32 52-86 4-35 (316)
463 3ghy_A Ketopantoate reductase 88.9 0.44 1.5E-05 45.2 5.3 33 51-86 3-35 (335)
464 2z3y_A Lysine-specific histone 88.8 0.46 1.6E-05 49.8 5.8 37 206-242 106-142 (662)
465 1ldn_A L-lactate dehydrogenase 88.7 0.52 1.8E-05 44.3 5.6 36 50-86 5-40 (316)
466 4g65_A TRK system potassium up 88.7 0.15 5E-06 50.9 1.8 34 51-87 3-36 (461)
467 1zud_1 Adenylyltransferase THI 88.6 0.43 1.5E-05 43.2 4.8 37 50-88 27-63 (251)
468 2xag_A Lysine-specific histone 88.6 0.46 1.6E-05 51.1 5.7 35 207-241 278-312 (852)
469 3ghy_A Ketopantoate reductase 88.5 0.85 2.9E-05 43.2 7.1 77 208-306 4-81 (335)
470 1x13_A NAD(P) transhydrogenase 88.5 0.45 1.5E-05 46.4 5.1 34 51-87 172-205 (401)
471 3h8v_A Ubiquitin-like modifier 88.4 0.42 1.4E-05 44.3 4.6 37 50-88 35-71 (292)
472 1lss_A TRK system potassium up 88.4 0.62 2.1E-05 37.3 5.2 33 207-239 4-36 (140)
473 1lld_A L-lactate dehydrogenase 88.4 0.51 1.7E-05 44.4 5.3 36 51-87 7-42 (319)
474 3p7m_A Malate dehydrogenase; p 88.2 0.6 2.1E-05 43.9 5.6 37 49-87 3-39 (321)
475 3ius_A Uncharacterized conserv 88.2 0.39 1.3E-05 44.2 4.3 33 51-86 5-37 (286)
476 1l7d_A Nicotinamide nucleotide 87.9 0.56 1.9E-05 45.5 5.4 35 50-87 171-205 (384)
477 4dsg_A UDP-galactopyranose mut 87.9 0.61 2.1E-05 46.8 5.8 37 206-242 8-45 (484)
478 3ic5_A Putative saccharopine d 87.8 0.54 1.8E-05 36.4 4.4 33 207-239 5-38 (118)
479 2dpo_A L-gulonate 3-dehydrogen 87.8 0.46 1.6E-05 44.7 4.6 35 50-87 5-39 (319)
480 3ado_A Lambda-crystallin; L-gu 87.8 0.47 1.6E-05 44.5 4.6 35 50-87 5-39 (319)
481 3l9w_A Glutathione-regulated p 87.7 0.44 1.5E-05 46.6 4.5 34 51-87 4-37 (413)
482 3g17_A Similar to 2-dehydropan 87.7 0.43 1.5E-05 44.4 4.3 32 52-86 3-34 (294)
483 2raf_A Putative dinucleotide-b 87.5 0.65 2.2E-05 40.7 5.1 35 50-87 18-52 (209)
484 2hjr_A Malate dehydrogenase; m 87.5 0.67 2.3E-05 43.8 5.5 35 51-87 14-48 (328)
485 2hmt_A YUAA protein; RCK, KTN, 87.4 0.68 2.3E-05 37.2 4.9 33 207-239 6-38 (144)
486 3c24_A Putative oxidoreductase 87.3 0.73 2.5E-05 42.5 5.7 33 51-86 11-44 (286)
487 3ado_A Lambda-crystallin; L-gu 87.3 0.57 1.9E-05 44.0 4.8 37 207-243 6-42 (319)
488 2uyy_A N-PAC protein; long-cha 87.3 0.67 2.3E-05 43.4 5.5 33 51-86 30-62 (316)
489 3i6i_A Putative leucoanthocyan 87.3 0.57 2E-05 44.5 5.0 35 50-87 9-44 (346)
490 3dhn_A NAD-dependent epimerase 87.3 0.54 1.8E-05 41.4 4.5 34 51-87 4-38 (227)
491 1kyq_A Met8P, siroheme biosynt 87.2 0.42 1.4E-05 43.8 3.8 34 206-239 12-45 (274)
492 3vtf_A UDP-glucose 6-dehydroge 87.2 0.68 2.3E-05 45.5 5.5 37 48-87 18-54 (444)
493 1kjq_A GART 2, phosphoribosylg 87.2 0.64 2.2E-05 45.0 5.4 40 46-88 6-45 (391)
494 3gg2_A Sugar dehydrogenase, UD 87.2 0.59 2E-05 46.3 5.1 33 52-87 3-35 (450)
495 3axb_A Putative oxidoreductase 87.1 0.37 1.3E-05 47.7 3.6 31 208-238 24-55 (448)
496 3phh_A Shikimate dehydrogenase 87.1 0.72 2.5E-05 42.1 5.2 33 51-86 118-150 (269)
497 3qha_A Putative oxidoreductase 87.1 0.45 1.5E-05 44.3 4.0 35 50-87 14-48 (296)
498 2v6b_A L-LDH, L-lactate dehydr 86.9 0.69 2.4E-05 43.2 5.2 34 53-87 2-35 (304)
499 1pjc_A Protein (L-alanine dehy 86.9 0.66 2.3E-05 44.5 5.2 33 51-86 167-199 (361)
500 2ewd_A Lactate dehydrogenase,; 86.8 0.78 2.7E-05 43.1 5.6 35 51-87 4-38 (317)
No 1
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=100.00 E-value=2.8e-58 Score=463.98 Aligned_cols=396 Identities=29% Similarity=0.506 Sum_probs=349.3
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (488)
+++++|||||||+||++||.+|++.|+ +.+|+|||++++.+|.+|++++.++.... ....+ .....+
T Consensus 7 ~~~~~vvIIGaG~aGl~aA~~L~~~g~-~~~V~lie~~~~~~y~~~~l~~~~~~~~~-~~~~~-----------~~~~~~ 73 (415)
T 3lxd_A 7 AERADVVIVGAGHGGAQAAIALRQNGF-EGRVLVIGREPEIPYERPPLSKEYLAREK-TFERI-----------CIRPAQ 73 (415)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHTTC-CSCEEEEESSSSCCBCSGGGGTTTTTTSS-CSGGG-----------BSSCHH
T ss_pred CCCCcEEEECChHHHHHHHHHHHccCc-CCCEEEEecCCCCCcCcccCCHHHHcCCC-CHHHh-----------ccCCHH
Confidence 346899999999999999999999997 56799999999999999988875554321 11111 245678
Q ss_pred HHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhc-C
Q 011351 129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK-A 207 (488)
Q Consensus 129 ~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~-~ 207 (488)
++.+.+++++.+++|+.++++.+.+.+.+++.+.||+||+|||+.+. .++++|.+.++++++++..++..+...+.. +
T Consensus 74 ~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~~~-~~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~ 152 (415)
T 3lxd_A 74 FWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPR-RLSCVGADLAGVHAVRTKEDADRLMAELDAGA 152 (415)
T ss_dssp HHHHTTEEEEETCCEEEEETTTTEEEETTSCEEEEEEEEECCCEECC-CCBTTSSCCBTEECCCSHHHHHHHHHHHHTTC
T ss_pred HHHHCCcEEEeCCEEEEEECCCCEEEECCCCEEEeeEEEEccCCccC-CCCCCCccccCEEEEcCHHHHHHHHHHhhhcC
Confidence 89999999999989999999999999999999999999999999886 456677777889999999999888887777 9
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEE
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 287 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~ 287 (488)
++++|||+|.+|+|+|..+.+.|.+|+++++.++++++.+++.+.+.+.+.+++.||++++++.|++++.+ ++++..|.
T Consensus 153 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~~v~ 231 (415)
T 3lxd_A 153 KNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGD-GTKVTGVR 231 (415)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEES-SSBEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEec-CCcEEEEE
Confidence 99999999999999999999999999999999999998889999999999999999999999999999864 56777899
Q ss_pred eCCCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccC-CcccccccHHHHHHH
Q 011351 288 LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY-DRTARVEHVDHARQS 366 (488)
Q Consensus 288 l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~-~~~~~~~~~~~A~~~ 366 (488)
+++|++++||.||+|+|.+|++++++.+|+..+ ++|.||++++|+.|+|||+|||+..+.... |...+.++|..|..|
T Consensus 232 l~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~gi~vd~~~~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~q 310 (415)
T 3lxd_A 232 MQDGSVIPADIVIVGIGIVPCVGALISAGASGG-NGVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDM 310 (415)
T ss_dssp ESSSCEEECSEEEECSCCEESCHHHHHTTCCCS-SSEECCTTCBCSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHH
T ss_pred eCCCCEEEcCEEEECCCCccChHHHHhCCCCcC-CCEEECCCCCcCCCCEEEEEeeeeecCcccCCcceeechHHHHHHH
Confidence 999999999999999999999999999999887 469999999999999999999999887666 777778899999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCceeEeccccCCCCcceeeEEeeCCCC--cEEEEccCC-CcEEEEEEECCEEEEEEeecCC
Q 011351 367 AQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGS 443 (488)
Q Consensus 367 g~~~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~ 443 (488)
|+.+|+||++. ..+|..+||||+++|+.. ++++|...+ +++..++.+ .+|.++|+++|+|+|+++ .|+
T Consensus 311 g~~aa~~i~g~-~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~ 381 (415)
T 3lxd_A 311 ATAAAKDICGA-PVPYKATPWFWSNQYDLK-------LQTVGLSTGHDNAVLRGDPATRSFSVVYLKGGKVVALDC-VNM 381 (415)
T ss_dssp HHHHHHHHTTC-CCCCCCCCEEEEEETTEE-------EEEEECCTTCSEEEEEEEGGGTEEEEEEEETTEEEEEEE-ESC
T ss_pred HHHHHHHhcCC-CCCCCCCCeeEeeeCCcE-------EEEEeCCCCCCEEEEEecCCCCeEEEEEEECCEEEEEEE-ECC
Confidence 99999999975 457999999999999864 888997643 566666664 679999999999999986 899
Q ss_pred hHHhhHHHHHHhcCCCCChhhhcCCC
Q 011351 444 PEEFQLLPTLARSQPFVDKAKLQQAS 469 (488)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (488)
+.....+++||.++..+++..|.++.
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~l~~~~ 407 (415)
T 3lxd_A 382 VKDYVQGKKLVEARAQIAPEQLADAG 407 (415)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHTCTT
T ss_pred hHHHHHHHHHHHCCCCCCHHHhcCCC
Confidence 99999999999999999988887764
No 2
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=100.00 E-value=6.9e-58 Score=459.37 Aligned_cols=394 Identities=29% Similarity=0.476 Sum_probs=348.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
+++|||||||+||++||.+|++.|+ +.+|+|||++++.+|.+|++++.++.... .+..+ .....+++
T Consensus 1 ~k~vvIIGaG~aGl~aA~~L~~~g~-~~~V~lie~~~~~~y~~~~l~~~~l~~~~-~~~~~-----------~~~~~~~~ 67 (404)
T 3fg2_P 1 NDTVLIAGAGHAGFQVAVSLRQAKY-PGRIALINDEKHLPYQRPPLSKAYLKSGG-DPNSL-----------MFRPEKFF 67 (404)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTC-CSCEEEECCSSSSSBCSGGGGTGGGGSCC-CTTSS-----------BSSCHHHH
T ss_pred CCCEEEEcChHHHHHHHHHHHhhCc-CCCEEEEeCCCCCCCCCccCCHHHHCCCC-CHHHc-----------cCCCHHHH
Confidence 3689999999999999999999997 67899999999999999999876654322 12221 24567889
Q ss_pred HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeE
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV 210 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~v 210 (488)
.+.+++++. ++|+.++++.+.+++.+++.+.||+||+|||+.+. .+++++.+.++++++++..+...+...+..++++
T Consensus 68 ~~~~i~~~~-~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~-~~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~v 145 (404)
T 3fg2_P 68 QDQAIELIS-DRMVSIDREGRKLLLASGTAIEYGHLVLATGARNR-MLDVPNASLPDVLYLRTLDESEVLRQRMPDKKHV 145 (404)
T ss_dssp HHTTEEEEC-CCEEEEETTTTEEEESSSCEEECSEEEECCCEEEC-CCCSTTTTSTTEECCSSHHHHHHHHHHGGGCSEE
T ss_pred HhCCCEEEE-EEEEEEECCCCEEEECCCCEEECCEEEEeeCCCcc-CCCCCCCCCCcEEEECCHHHHHHHHHHhhcCCeE
Confidence 999999998 89999999999999999999999999999999876 4566777778999999999999988888889999
Q ss_pred EEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC
Q 011351 211 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 290 (488)
Q Consensus 211 vVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~ 290 (488)
+|||+|.+|+|+|..+.+.|.+|+++++.++++++.+++.+.+.+.+.+++.||++++++.|++++.+ ++++..|.+++
T Consensus 146 vViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~~V~~~d 224 (404)
T 3fg2_P 146 VVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAE-GDRVTGVVLSD 224 (404)
T ss_dssp EEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETT
T ss_pred EEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEEec-CCcEEEEEeCC
Confidence 99999999999999999999999999999999988889999999999999999999999999999854 56777899999
Q ss_pred CcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHH
Q 011351 291 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC 370 (488)
Q Consensus 291 g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~ 370 (488)
|++++||.||+|+|++|+.++++.+|+..++ +|.||++++|+.|+|||+|||+..+....|...+.++|..|..||+.+
T Consensus 225 G~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~-Gi~vd~~~~t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~a 303 (404)
T 3fg2_P 225 GNTLPCDLVVVGVGVIPNVEIAAAAGLPTAA-GIIVDQQLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQARCV 303 (404)
T ss_dssp SCEEECSEEEECCCEEECCHHHHHTTCCBSS-SEEECTTSBCSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHHH
T ss_pred CCEEEcCEEEECcCCccCHHHHHhCCCCCCC-CEEECCCcccCCCCEEEeecceeecCccCCceeeehHHHHHHHHHHHH
Confidence 9999999999999999999999999999885 599999999999999999999998877777777788999999999999
Q ss_pred HHHHhcCCCCCCCCCCceeEeccccCCCCcceeeEEeeCCCC--cEEEEccCC-CcEEEEEEECCEEEEEEeecCChHHh
Q 011351 371 IKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEF 447 (488)
Q Consensus 371 a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~ 447 (488)
|++|++. ..+|..+||||+++|+.. +++.|...+ +.+..++.+ .+|.++|+++|+|+|+++ .|++...
T Consensus 304 a~~i~g~-~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~ 374 (404)
T 3fg2_P 304 AARLTGD-AKPYDGYPWFWSDQGDDK-------LQIVGLTAGFDQVVIRGSVAERSFSAFCYKAGKLIGIES-VNRAADH 374 (404)
T ss_dssp HHHTTTC-CCCCCCCCEEEEEETTEE-------EEEEECCTTCCEEEEEEETTTTEEEEEEEETTEEEEEEE-ESCHHHH
T ss_pred HHHhCCC-CCCCCCCCceEeEECCcE-------EEEEeCCCCCCEEEEEecCCCCcEEEEEEECCEEEEEEE-eCCHHHH
Confidence 9999975 467899999999999864 888897643 566677664 679999999999999986 8999999
Q ss_pred hHHHHHHhcCCCCChhhhcCCCc
Q 011351 448 QLLPTLARSQPFVDKAKLQQASS 470 (488)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~ 470 (488)
..+++||.++..+++..|.++..
T Consensus 375 ~~~~~~~~~~~~~~~~~l~~~~~ 397 (404)
T 3fg2_P 375 VFGRKILPLDKSVTPEQAADLSF 397 (404)
T ss_dssp HHHHHHTTTTCCCCHHHHHCTTS
T ss_pred HHHHHHHHcCCCCCHHHhcCCCC
Confidence 99999999999999988877643
No 3
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=100.00 E-value=5.9e-58 Score=460.34 Aligned_cols=391 Identities=27% Similarity=0.447 Sum_probs=342.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
+++|||||||+||++||.+|++.|+ +.+|+|||++++++|.+|++++.++..... ...+ ....+++
T Consensus 2 ~~~vvIIGaG~AGl~aA~~L~~~g~-~~~V~li~~~~~~~y~~~~l~~~~~~g~~~-~~~~------------~~~~~~~ 67 (410)
T 3ef6_A 2 ATHVAIIGNGVGGFTTAQALRAEGF-EGRISLIGDEPHLPYDRPSLSKAVLDGSLE-RPPI------------LAEADWY 67 (410)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEEECSSSSSBCSGGGGTHHHHTSSS-SCCB------------SSCTTHH
T ss_pred CCCEEEEcccHHHHHHHHHHHccCc-CCeEEEEECCCCCCcCCccccHHHhCCCCC-HHHh------------cCCHHHH
Confidence 4599999999999999999999997 667999999999999999998755432211 1111 2356788
Q ss_pred HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeE
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV 210 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~v 210 (488)
++.+++++.+++|+.+++..++|.+.+|+++.||+||||||+.++ .|+++|.+.++++++++..+...+.+.+..++++
T Consensus 68 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~-~~~ipG~~~~~v~~~~~~~d~~~l~~~~~~~~~v 146 (410)
T 3ef6_A 68 GEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRAR-TMALPGSQLPGVVTLRTYGDVQVLRDSWTSATRL 146 (410)
T ss_dssp HHTTCEEEESCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC-CCCCTTTTSTTEECCCSHHHHHHHHHHCCTTCEE
T ss_pred HHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEccCCccc-CCCCCCccccceEEeccHHHHHHHHHHhccCCeE
Confidence 899999999999999999999999999999999999999999986 4567787788999999999998888877789999
Q ss_pred EEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC
Q 011351 211 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 290 (488)
Q Consensus 211 vVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~ 290 (488)
+|||+|++|+|+|..+.+.|.+|+++++.++++++.+++.+.+.+.+.+++.||++++++.|++++.+ +.+..+.+++
T Consensus 147 vViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~~~v~~~d 224 (410)
T 3ef6_A 147 LIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGE--GQLEQVMASD 224 (410)
T ss_dssp EEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEECS--SSCCEEEETT
T ss_pred EEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEecc--CcEEEEEECC
Confidence 99999999999999999999999999999999988789999999999999999999999999999853 3555789999
Q ss_pred CcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHH
Q 011351 291 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC 370 (488)
Q Consensus 291 g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~ 370 (488)
|++++||.||+|+|.+|++++++++|+..+ ++|.||++++|+.|+|||+|||+..+... |...+.++|..|..||+.+
T Consensus 225 g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~gi~vd~~~~t~~~~IyA~GD~a~~~~~~-g~~~~~~~~~~A~~qg~~a 302 (410)
T 3ef6_A 225 GRSFVADSALICVGAEPADQLARQAGLACD-RGVIVDHCGATLAKGVFAVGDVASWPLRA-GGRRSLETYMNAQRQAAAV 302 (410)
T ss_dssp SCEEECSEEEECSCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEEEBTT-SSEECCCCHHHHHHHHHHH
T ss_pred CCEEEcCEEEEeeCCeecHHHHHhCCCccC-CeEEEccCeeECCCCEEEEEcceeccCCC-CCeeeechHHHHHHHHHHH
Confidence 999999999999999999999999999987 56999999999999999999999987755 6666678999999999999
Q ss_pred HHHHhcCCCCCCCCCCceeEeccccCCCCcceeeEEeeCCCC--cEEEEccCC-CcEEEEEEECCEEEEEEeecCChHHh
Q 011351 371 IKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEF 447 (488)
Q Consensus 371 a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~ 447 (488)
|++|++. ..+|..+||||+++|++. +++.|...+ +.+..++.+ ..|.++|+++|+|+|+++ .|++...
T Consensus 303 a~~i~g~-~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~~ 373 (410)
T 3ef6_A 303 AAAILGK-NVSAPQLPVSWTEIAGHR-------MQMAGDIEGPGDFVSRGMPGSGAALLFRLQERRIQAVVA-VDAPRDF 373 (410)
T ss_dssp HHHHTTC-CCCCCBCCEEEEEETTEE-------EEEESCSSSSSEEEEESCTTSSSEEEEEEETTEEEEEEE-ESCHHHH
T ss_pred HHHHcCC-CCCCCCCCeeEEEECCce-------EEEEcCCCCCCEEEEEeeCCCCeEEEEEEECCEEEEEEE-ECChHHH
Confidence 9999975 467889999999999865 888887643 566677765 579999999999999996 8999999
Q ss_pred hHHHHHHhcCCCCChhhhcCCC
Q 011351 448 QLLPTLARSQPFVDKAKLQQAS 469 (488)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~ 469 (488)
..+++||.++..+++..|.++.
T Consensus 374 ~~~~~~i~~~~~~~~~~l~~~~ 395 (410)
T 3ef6_A 374 ALATRLVEARAAIEPARLADLS 395 (410)
T ss_dssp HHHHHHHHHTCBCCHHHHHCTT
T ss_pred HHHHHHHhCCCCCCHHHhcCCC
Confidence 9999999999999998887664
No 4
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=100.00 E-value=6.7e-54 Score=433.23 Aligned_cols=405 Identities=28% Similarity=0.470 Sum_probs=340.2
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
++++|||||||+||+++|..|++.|+ +.+|+|||+++..+|.++++++.++.... ....+ .....++
T Consensus 3 ~~~~vvIIGgG~aGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~l~~~~~~~~~-~~~~~-----------~~~~~~~ 69 (431)
T 1q1r_A 3 ANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYLAGKA-TAESL-----------YLRTPDA 69 (431)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSCCSCCBCSGGGGTTTTTTCS-CSGGG-----------BSSCHHH
T ss_pred CCCcEEEEcCHHHHHHHHHHHHccCc-CCCEEEEECCCCCCCcCCCCcHHHhCCCC-ChHHh-----------cccCHHH
Confidence 45899999999999999999999987 56899999999999998888765543211 11111 1245678
Q ss_pred HHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCc---EEEecCHHHHHHHHHhhhc
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG---VHYIRDVADADALISSLEK 206 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~g---v~~~~~~~~~~~~~~~~~~ 206 (488)
+++.+++++.+++|+.++++.++|++++|+++.||+||+|||+.+. .|+++|.+.++ ++++++..+...+.+.+..
T Consensus 70 ~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p~-~~~i~G~~~~~~~~v~~~~~~~d~~~l~~~l~~ 148 (431)
T 1q1r_A 70 YAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPR-PLPVASGAVGKANNFRYLRTLEDAECIRRQLIA 148 (431)
T ss_dssp HHHTTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC-CCGGGTTHHHHSTTEEESSSHHHHHHHHHTCCT
T ss_pred HHhCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEcCCCCcc-CCCCCCcccCCCceEEEECCHHHHHHHHHHhhc
Confidence 8899999999999999999989999999989999999999999886 45566655556 8888998888888777777
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeC-CCCcEEE
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG-SDGRVAA 285 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~-~~~~v~~ 285 (488)
+++++|||+|.+|+|+|..|.+.|.+|+++++.++++++.+++++.+.+.+.+++.||++++++++++++.. +++++..
T Consensus 149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~ 228 (431)
T 1q1r_A 149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTA 228 (431)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEE
Confidence 999999999999999999999999999999999999987789999999999999999999999999999852 3456667
Q ss_pred EEeCCCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHH
Q 011351 286 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ 365 (488)
Q Consensus 286 v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~ 365 (488)
+.+++|+++++|.||+|+|.+|++++++++++..+ ++|.||++++|+.|+|||+|||+..+....|...+.++|..|..
T Consensus 229 v~~~~G~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~-~gi~Vd~~~~ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~ 307 (431)
T 1q1r_A 229 VLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALE 307 (431)
T ss_dssp EEETTSCEEECSEEEECCCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEEEETTTTEEEECCSHHHHHH
T ss_pred EEeCCCCEEEcCEEEECCCCCcCcchhhccCCCCC-CCEEECCCcccCCCCEEEEEeEEEEccccCCceEeeCHHHHHHH
Confidence 88999999999999999999999999999999887 46999999999999999999999987665666666778999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCceeEeccccCCCCcceeeEEeeCCCC--cEEEEccCC-CcEEEEEEECCEEEEEEeecC
Q 011351 366 SAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESG 442 (488)
Q Consensus 366 ~g~~~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~ 442 (488)
||+.+|++|++.. .+|..+|++|+++|+.. ++++|.... +....++.+ ..|.++|.++|+|+|+++ .+
T Consensus 308 qg~~aa~~i~g~~-~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~-~g 378 (431)
T 1q1r_A 308 QARKIAAILCGKV-PRDEAAPWFWSDQYEIG-------LKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLAVDT-VN 378 (431)
T ss_dssp HHHHHHHHHTTCC-CCCCCCCEEEEEETTEE-------EEEEECCTTCSEEEEEEETTTTEEEEEEEETTEEEEEEE-ES
T ss_pred HHHHHHHHhcCCC-CCCCCCCeEEEEECCce-------EEEEeCCCCCCEEEEEccCCCCeEEEEEEeCCEEEEEEE-EC
Confidence 9999999999744 57888999999988754 677776543 445555554 458888999999999996 78
Q ss_pred ChHHhhHHHHHHhcCCCCChhhhcCC-CcHHHHHHHH
Q 011351 443 SPEEFQLLPTLARSQPFVDKAKLQQA-SSVEEALEIA 478 (488)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 478 (488)
+......++.++..+..++...|.++ ..+.+.++.+
T Consensus 379 ~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~ 415 (431)
T 1q1r_A 379 RPVEFNQSKQIITDRLPVEPNLLGDESVPLKEIIAAA 415 (431)
T ss_dssp CHHHHHHHHHHHHTTCCCCHHHHTCTTSCHHHHHHHH
T ss_pred ChHHHHHHHHHHHCCCCCCHHHhhCCCCCHHHHHHHH
Confidence 88888889999999999998887665 3455554433
No 5
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=100.00 E-value=2.4e-55 Score=436.17 Aligned_cols=375 Identities=21% Similarity=0.293 Sum_probs=317.2
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCH
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (488)
..++++|||||||+||++||.+|++. +.+|+|||++++.+|.+|++++. +... ....++ ..+..
T Consensus 6 ~~~~~~~vIvGgG~AGl~aA~~L~~~---~~~itlie~~~~~~y~~~~l~~~-l~g~-~~~~~l-----------~~~~~ 69 (385)
T 3klj_A 6 HHKSTKILILGAGPAGFSAAKAALGK---CDDITMINSEKYLPYYRPRLNEI-IAKN-KSIDDI-----------LIKKN 69 (385)
T ss_dssp --CBCSEEEECCSHHHHHHHHHHTTT---CSCEEEECSSSSCCBCGGGHHHH-HHSC-CCGGGT-----------BSSCH
T ss_pred ccCCCCEEEEcCcHHHHHHHHHHhCC---CCEEEEEECCCCCCcccChhhHH-HcCC-CCHHHc-----------cCCCH
Confidence 34578999999999999999999443 45999999999999999998863 3221 111111 24678
Q ss_pred hHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcC
Q 011351 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA 207 (488)
Q Consensus 128 ~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~ 207 (488)
+++++.+++++++++|+++|+++++|++++|+++.||+||||||+.|+ .|+++|.+ +++++++..+...+.+.+..+
T Consensus 70 ~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~-~p~i~G~~--~v~~~~~~~d~~~l~~~l~~~ 146 (385)
T 3klj_A 70 DWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIAN-KIKVPHAD--EIFSLYSYDDALKIKDECKNK 146 (385)
T ss_dssp HHHHHTTCEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC-CCCCTTCS--CEECCSSHHHHHHHHHHHHHH
T ss_pred HHHHHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEecCCCcC-CCCCCCCC--CeEEeCCHHHHHHHHHHhhcC
Confidence 899999999999999999999999999999999999999999999887 45567754 888999999998888877788
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEE
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 287 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~ 287 (488)
++++|||+|.+|+|+|..|++.|.+|+++++.++++++.+++.+.+.+.+.+++.||++++++.++++
T Consensus 147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i------------ 214 (385)
T 3klj_A 147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM------------ 214 (385)
T ss_dssp SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGC------------
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEc------------
Confidence 99999999999999999999999999999999999998889999999999999999999999877665
Q ss_pred eCCCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHH
Q 011351 288 LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSA 367 (488)
Q Consensus 288 l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g 367 (488)
|+++++|.||+|+|++|++++++++++..++ +|.||++++|+.|+|||+|||+.++... ..+|..|..||
T Consensus 215 ---g~~~~~D~vv~a~G~~p~~~~~~~~gl~~~~-gi~vd~~~~t~~~~IyA~GD~a~~~~~~------~~~~~~A~~qg 284 (385)
T 3klj_A 215 ---GDLIRSSCVITAVGVKPNLDFIKDTEIASKR-GILVNDHMETSIKDIYACGDVAEFYGKN------PGLINIANKQG 284 (385)
T ss_dssp ---HHHHHHSEEEECCCEEECCGGGTTSCCCBSS-SEEECTTCBCSSTTEEECGGGEEETTBC------CCCHHHHHHHH
T ss_pred ---CeEEecCeEEECcCcccChhhhhhcCCCcCC-CEEECCCcccCCCCEEEEEeeEecCCCc------ccHHHHHHHHH
Confidence 5679999999999999999999999998874 5999999999999999999999976532 23788899999
Q ss_pred HHHHHHHhcCCCCCCCC-CCceeEeccccCCCCcceeeEEeeCCCC---cEEEEccCCCcEEEEEEECCEEEEEEeecCC
Q 011351 368 QHCIKALLSAQTHTYDY-LPYFYSRVFEYEGSPRKVWWQFFGDNVG---ETIEIGNFDPKIATFWIDSGKLKGVLVESGS 443 (488)
Q Consensus 368 ~~~a~~i~~~~~~~~~~-~p~~~~~~~~~~g~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 443 (488)
+.+|++|++.. .+|.. +|++|+++|+.. ++++|.... +.+.....+..|.++|+++|+|+|+++ .|+
T Consensus 285 ~~aa~~i~g~~-~~~~~~~~~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~g~ 355 (385)
T 3klj_A 285 EVAGLNACGED-ASYSEIIPSPILKVSGIS-------IISCGDIENNKPSKVFRSTQEDKYIVCMLKENKIDAAAV-IGD 355 (385)
T ss_dssp HHHHHHHTTCC-CCCCCCCCCCEEEETTEE-------EEEESCCTTCCCSEEEEEECSSCEEEEEEETTEEEEEEE-ESC
T ss_pred HHHHHHhcCCC-cCCCCCCCcEEEEeCCCc-------EEEEcCCCCCCCeEEEEECCCCeEEEEEEECCEEEEEEE-ECC
Confidence 99999999744 46665 699999999865 778887643 334342224679999999999999996 788
Q ss_pred hHHhhHHHHHHhcCCCCChhhhcCCCcHHHHHHH
Q 011351 444 PEEFQLLPTLARSQPFVDKAKLQQASSVEEALEI 477 (488)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (488)
......++.+|+++.+++.. ++++|.+..
T Consensus 356 ~~~~~~~~~~i~~~~~~~~~-----~~~~E~~~~ 384 (385)
T 3klj_A 356 VSLGTKLKKAIDSSKSFDNI-----SSLDAILNN 384 (385)
T ss_dssp HHHHHHHHHHHHTTCBCSCC-----SCHHHHHTT
T ss_pred cHHHHHHHHHHHcCCCcccc-----cCHHHHHhh
Confidence 88888999999999877643 899998863
No 6
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=100.00 E-value=4.6e-54 Score=431.57 Aligned_cols=392 Identities=26% Similarity=0.401 Sum_probs=328.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
++++|+|||||+||+++|..|++.|+ +.+|+|||+++..+|.++.+++.++.... ..++ ... +
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~~~~~~~~~~~--~~~~-------------~~~-~ 68 (408)
T 2gqw_A 6 LKAPVVVLGAGLASVSFVAELRQAGY-QGLITVVGDEAERPYDRPPLSKDFMAHGD--AEKI-------------RLD-C 68 (408)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTC-CSCEEEEESSCSCCBCSGGGGTHHHHHCC--GGGS-------------BCC-C
T ss_pred CCCcEEEECChHHHHHHHHHHHccCC-CCeEEEEECCCCCcccCCCCCHHHhCCCc--hhhh-------------hHH-H
Confidence 46799999999999999999999987 56799999999999998887764442211 1111 011 4
Q ss_pred HHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCC-CCCCCCcEEEecCHHHHHHHHHhhhcCC
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEK-IGGYLPGVHYIRDVADADALISSLEKAK 208 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~-~g~~~~gv~~~~~~~~~~~~~~~~~~~~ 208 (488)
+++.+++++.+++|+.++++.++|++.+|+++.||+||+|||+.+.. |++ +|.+ ++++++++..+...+.+.+..++
T Consensus 69 ~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~-~~i~~G~~-~~v~~~~~~~~~~~l~~~~~~~~ 146 (408)
T 2gqw_A 69 KRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRA-LPTLQGAT-MPVHTLRTLEDARRIQAGLRPQS 146 (408)
T ss_dssp TTSCSCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECC-CGGGTTCS-SCEEECCSHHHHHHHHTTCCTTC
T ss_pred HHHCCCEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCC-CCccCCCC-CcEEEECCHHHHHHHHHHhhcCC
Confidence 56779999999889999999999999999899999999999998864 555 6765 78888899888888877666789
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 288 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l 288 (488)
+++|||+|.+|+|+|..|.+.|.+|+++++.++++++.+++++.+.+.+.+++.||++++++++++++ + + .|.+
T Consensus 147 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~--~---~v~~ 220 (408)
T 2gqw_A 147 RLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSV-D--G---VVLL 220 (408)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEE-T--T---EEEE
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE-C--C---EEEE
Confidence 99999999999999999999999999999999999877899999999999999999999999999998 3 2 5778
Q ss_pred CCCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHH
Q 011351 289 EDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ 368 (488)
Q Consensus 289 ~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~ 368 (488)
++|+++++|.||+|+|.+|++++++++|+..++ +|.||++++|+.|+|||+|||+..+....|...+.++|..|..||+
T Consensus 221 ~~g~~i~~D~vi~a~G~~p~~~l~~~~gl~~~~-gi~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~ 299 (408)
T 2gqw_A 221 DDGTRIAADMVVVGIGVLANDALARAAGLACDD-GIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGI 299 (408)
T ss_dssp TTSCEEECSEEEECSCEEECCHHHHHHTCCBSS-SEECCTTCBCSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHH
T ss_pred CCCCEEEcCEEEECcCCCccHHHHHhCCCCCCC-CEEECCCCccCCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHH
Confidence 899999999999999999999999999998874 5999999999999999999999987655565555678999999999
Q ss_pred HHHHHHhcCCCCCCCCCCceeEeccccCCCCcceeeEEeeC-CCCcEEEEccCC---CcEEEEEEECCEEEEEEeecCCh
Q 011351 369 HCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGD-NVGETIEIGNFD---PKIATFWIDSGKLKGVLVESGSP 444 (488)
Q Consensus 369 ~~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~-~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~ 444 (488)
.+|+||++....+|..+|++|+++|+.. +.++|. ...+....++.+ ..|.++|.++|+|+|+++ .+..
T Consensus 300 ~aa~~i~g~~~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~-~g~~ 371 (408)
T 2gqw_A 300 AVARHLVDPTAPGYAELPWYWSDQGALR-------IQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVGATC-VNNA 371 (408)
T ss_dssp HHHHHHHCTTSCCCCCCCEEEEEETTEE-------EEEEECSCCSEEEEESCCCSSSCCEEEEEEETTEEEEEEE-ESCH
T ss_pred HHHHHhcCCCCCcCCCCCeEEEEECCce-------EEEECCCCCCEEEEEccCCCCCCeEEEEEEeCCEEEEEEE-ECCh
Confidence 9999999754327888999999998764 677886 223445555543 568899999999999997 6777
Q ss_pred HHhhHHHHHHhcCCCCChhhhcCCC-cHHHHH
Q 011351 445 EEFQLLPTLARSQPFVDKAKLQQAS-SVEEAL 475 (488)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 475 (488)
.....++.+|+++..++...+.++. .+.+.+
T Consensus 372 ~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~ 403 (408)
T 2gqw_A 372 RDFAPLRRLLAVGAKPDRAALADPATDLRKLA 403 (408)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHCTTCCHHHHH
T ss_pred HHHHHHHHHHHCCCCCChHHhcCCCCCHHHHh
Confidence 8888999999999999988776664 444444
No 7
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=100.00 E-value=1.5e-51 Score=422.59 Aligned_cols=406 Identities=23% Similarity=0.360 Sum_probs=309.0
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCC--CCCC
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSG--GERQ 125 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 125 (488)
++.+++|||||||+||++||..|++.+. +.+|+|||++++++|.+|++++.++............+..+.+.. ....
T Consensus 8 ~~~~~~vvIIGgG~AGl~aA~~L~~~~~-g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (493)
T 1m6i_A 8 APSHVPFLLIGGGTAAFAAARSIRARDP-GARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQ 86 (493)
T ss_dssp CCSEEEEEEESCSHHHHHHHHHHHHHST-TCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSS
T ss_pred CCCcCCEEEECChHHHHHHHHHHHhcCC-CCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhccccccccccccccccc
Confidence 3456899999999999999999999864 569999999999999999888766543221000000000000000 0000
Q ss_pred CHhH---------HHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCC----CCcEEEec
Q 011351 126 TPEW---------YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY----LPGVHYIR 192 (488)
Q Consensus 126 ~~~~---------~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~----~~gv~~~~ 192 (488)
..++ +.+.+++++++++|+.+|++.++|++.+|+++.||+||||||+.++.+| .++.. .+++++++
T Consensus 87 ~~~~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs~p~~~~-~~~~~~~~~~~~v~~~~ 165 (493)
T 1m6i_A 87 PPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLS-AIDRAGAEVKSRTTLFR 165 (493)
T ss_dssp CGGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEECCCH-HHHTSCHHHHHTEEECC
T ss_pred chHhhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCC-CcccccccccCceEEEc
Confidence 1111 1356899999999999999999999999999999999999999886433 33321 35788889
Q ss_pred CHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHh----CCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEc
Q 011351 193 DVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG----WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK 268 (488)
Q Consensus 193 ~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~----~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~ 268 (488)
+..++..+...+..+++++|||+|++|+|+|..|.+ .|.+|+++++.+.++.+.+++.+.+.+.+.+++.||++++
T Consensus 166 ~~~d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v~~ 245 (493)
T 1m6i_A 166 KIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMP 245 (493)
T ss_dssp SHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEEC
T ss_pred CHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHHHhcCCEEEe
Confidence 998888888777789999999999999999999976 4788999999888888888999999999999999999999
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc--CCCEEeCCCCCCCCCCEEEEceeccc
Q 011351 269 GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAF 346 (488)
Q Consensus 269 ~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~--~g~i~vd~~~~t~~~~Ifa~GD~a~~ 346 (488)
++.|++++.+ ++.+ .+.+.+|++++||.||+|+|.+|++++++.+|+..+ +|+|.||+++|| .|||||+|||+..
T Consensus 246 ~~~V~~i~~~-~~~~-~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~~~~ggi~Vd~~l~t-~~~IyA~GD~a~~ 322 (493)
T 1m6i_A 246 NAIVQSVGVS-SGKL-LIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQA-RSNIWVAGDAACF 322 (493)
T ss_dssp SCCEEEEEEE-TTEE-EEEETTSCEEEESEEEECCCEEECCTTHHHHTCCBCTTTCSEECCTTCEE-ETTEEECGGGEEE
T ss_pred CCEEEEEEec-CCeE-EEEECCCCEEECCEEEECCCCCccHHHHHHcCCccccCCCcEEECCCccc-CCCeeEeeeeEec
Confidence 9999999853 3333 688899999999999999999999999999998876 479999999998 6999999999997
Q ss_pred CCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCceeEeccccCCCCc----ceeeEEeeCCCC-----c----
Q 011351 347 PLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPR----KVWWQFFGDNVG-----E---- 413 (488)
Q Consensus 347 ~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~----~~~~~~~g~~~~-----~---- 413 (488)
+....|.. ++++|+.|..||+.+|+||++ ...+|...|+||++++...+... ...++++|.... +
T Consensus 323 ~~~~~g~~-~~~~~~~A~~qg~~aa~ni~g-~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~~~G~~~~~~~~~~~~~~ 400 (493)
T 1m6i_A 323 YDIKLGRR-RVEHHDHAVVSGRLAGENMTG-AAKPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSA 400 (493)
T ss_dssp EETTTEEE-CCCCHHHHHHHHHHHHHHHTS-CCCCCCCCCEEEEESSTTCEEEEEECCCTTSCEEEEEECCCTTCSHHHH
T ss_pred cCcccCcc-ccchHHHHHHHHHHHHHHhcC-CCCCcCCcCceeeeeccCcceEEEeccCCCcceEEeecccccccccccc
Confidence 76554543 467899999999999999996 45689999999999873211000 001223332100 0
Q ss_pred --------------------EEEE----c-------c-CCCcEEEEEEECCEEEEEEeecCChHHhhHHHHHHhcCCCCC
Q 011351 414 --------------------TIEI----G-------N-FDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVD 461 (488)
Q Consensus 414 --------------------~~~~----~-------~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (488)
.... + + ...+|.+||+++|+|+|+++ .|++..++.+++||+.+..++
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~li~~~~~~~ 479 (493)
T 1m6i_A 401 TEQSGTGIRSESETESEASEITIPPSTPAVPQAPVQGEDYGKGVIFYLRDKVVVGIVL-WNIFNRMPIARKIIKDGEQHE 479 (493)
T ss_dssp HHHHSCSCHHHHSCSCCCC--------------------CCEEEEEEEETTEEEEEEE-ESCCSCHHHHHHHHHHCCBCS
T ss_pred cccccccccccccccccccccccccccccccccccccccCCcEEEEEEeCCEEEEEEE-ecCcchHHHHHHHHhCCCCCC
Confidence 0000 0 1 12567889999999999986 888999999999998887665
No 8
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=100.00 E-value=1.3e-49 Score=402.10 Aligned_cols=393 Identities=20% Similarity=0.271 Sum_probs=303.3
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK 131 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (488)
+||||||||+||++||.+|++.|. +.+|+|||++++.+|.++.++. ++.......... ......++++
T Consensus 1 PKVvIIG~G~AGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~l~~-~~~~~~~~~~~~----------~~~~~~~~~~ 68 (437)
T 4eqs_A 1 PKIVVVGAVAGGATCASQIRRLDK-ESDIIIFEKDRDMSFANCALPY-VIGEVVEDRRYA----------LAYTPEKFYD 68 (437)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHCS-SSCEEEEESSSCSSBCGGGHHH-HHTTSSCCGGGT----------BCCCHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-CCcEEEEeCCCCCCCCcchhHH-HHcCCccchhhh----------hhcCHHHHHH
Confidence 479999999999999999999986 6789999999999998877654 221111100000 0123457788
Q ss_pred HCCCeEEeCCcEEEEeCCCcEEEeCCC-----cEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhh-
Q 011351 132 EKGIEMIYQDPVTSIDIEKQTLITNSG-----KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE- 205 (488)
Q Consensus 132 ~~~i~~~~~~~v~~id~~~~~v~~~~g-----~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~- 205 (488)
+.+++++.+++|+.+|++.+.+.+.++ .++.||+||||||++|+. |.++ .++++.+++..++..+.+.+.
T Consensus 69 ~~~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~-p~i~---g~~~~~~~~~~~~~~l~~~~~~ 144 (437)
T 4eqs_A 69 RKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANS-LGFE---SDITFTLRNLEDTDAIDQFIKA 144 (437)
T ss_dssp HHCCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECC-CCCC---CTTEECCSSHHHHHHHHHHHHH
T ss_pred hcCCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCcccc-cccc---CceEEeeccHHHHHHHHHhhhc
Confidence 999999999999999999988776432 368999999999998764 4333 356788888888887766543
Q ss_pred -cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEE
Q 011351 206 -KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 284 (488)
Q Consensus 206 -~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~ 284 (488)
.+++++|||+|.+|+|+|..+.++|.+|+++++.+++++. +++++.+.+.+.++++||++++++++++++..
T Consensus 145 ~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~-~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~------ 217 (437)
T 4eqs_A 145 NQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIPYRLNEEINAINGN------ 217 (437)
T ss_dssp HTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT-SCGGGGHHHHHHHHHTTCCEEESCCEEEEETT------
T ss_pred cCCcEEEEECCccchhhhHHHHHhcCCcceeeeeecccccc-ccchhHHHHHHHhhccceEEEeccEEEEecCC------
Confidence 5789999999999999999999999999999999999974 79999999999999999999999999998743
Q ss_pred EEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHH
Q 011351 285 AVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA 363 (488)
Q Consensus 285 ~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A 363 (488)
.+.+++|+++++|.|++|+|++||+++++..|+..+ +|+|.||+++||++|||||+|||+..+....+.......+..|
T Consensus 218 ~v~~~~g~~~~~D~vl~a~G~~Pn~~~~~~~gl~~~~~G~I~vd~~~~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A 297 (437)
T 4eqs_A 218 EITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASVPLAWGA 297 (437)
T ss_dssp EEEETTSCEEECSEEEECCCEEESCGGGTTSSCCCCTTSCEECCTTCBCSSTTEEECGGGEEEEBSSSSSEECCCSHHHH
T ss_pred eeeecCCeEEeeeeEEEEeceecCcHHHHhhhhhhccCCcEecCCCccCCCCCEEEEEEccCcccccCCccccchhHHHH
Confidence 578899999999999999999999999999999876 6779999999999999999999999988777777767788899
Q ss_pred HHHHHHHHHHHhcCCCCCC-CCCCceeEeccccCCCCcceeeEEeeCCCCc-------EEE--Ecc-------CCCcEEE
Q 011351 364 RQSAQHCIKALLSAQTHTY-DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIE--IGN-------FDPKIAT 426 (488)
Q Consensus 364 ~~~g~~~a~~i~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~~~--~~~-------~~~~~~~ 426 (488)
.+||+.+|+||++.....+ ...+..+...++.+ +..+|....+ ... ... -...+.|
T Consensus 298 ~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~p~-------ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~K 370 (437)
T 4eqs_A 298 HRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYT-------FASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLR 370 (437)
T ss_dssp HHHHHHHHHHHHSCTTCCCCCBCCCEEEEETTEE-------EEEEESCGGGGGGSCEEEEEEEEESSCTTSSSCCEEEEE
T ss_pred HHHHHHHHHHHcCCCCcccccceeEEeeeeccce-------EEEeeCCHHHHHhCCceEEEEecCCchhhcCCCCcEEEE
Confidence 9999999999998654443 23333333333322 4445543321 111 111 0124677
Q ss_pred EEEE--CCEEEEEEeecCC-hHHhhHH-HHHHhcCCCCCh-hhh--cCCCcHHHH
Q 011351 427 FWID--SGKLKGVLVESGS-PEEFQLL-PTLARSQPFVDK-AKL--QQASSVEEA 474 (488)
Q Consensus 427 ~~~~--~~~~~g~~~~~~~-~~~~~~~-~~~~~~~~~~~~-~~~--~~~~~~~~~ 474 (488)
+.++ +++|+|+++++.+ ++++... ..+|+++.+++. ..+ ..||+++++
T Consensus 371 li~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~yhP~~s~~ 425 (437)
T 4eqs_A 371 VYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAFAPPYSHP 425 (437)
T ss_dssp EEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCCTTTCCS
T ss_pred EEEECCCCEEEEEEEECcCCHHHHHHHHHHHHHcCCcHHHHhcCccccCCCCCch
Confidence 7774 5899999987764 6666554 556788888763 332 446877765
No 9
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=100.00 E-value=2.4e-48 Score=384.17 Aligned_cols=354 Identities=23% Similarity=0.388 Sum_probs=280.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
..||+|||||+||++||..|++.| +|+|||+++..+|.++.+++ ++.. ......+ .....+++
T Consensus 8 ~~~vvIIGgG~AGl~aA~~l~~~g----~V~lie~~~~~~~~~~~l~~-~~~g-~~~~~~~-----------~~~~~~~~ 70 (367)
T 1xhc_A 8 GSKVVIVGNGPGGFELAKQLSQTY----EVTVIDKEPVPYYSKPMLSH-YIAG-FIPRNRL-----------FPYSLDWY 70 (367)
T ss_dssp -CEEEEECCSHHHHHHHHHHTTTS----EEEEECSSSSCCCCSTTHHH-HHTT-SSCGGGG-----------CSSCHHHH
T ss_pred CCcEEEECCcHHHHHHHHHHhhcC----CEEEEECCCCCccccchhHH-HHhC-CCCHHHh-----------ccCCHHHH
Confidence 469999999999999999998875 89999999988888777664 2221 1111111 23457788
Q ss_pred HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeE
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV 210 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~v 210 (488)
++.+++++.+++|+.+|++.++|+ .+++++.||+||||||+.|. .|+++| .++++++++..+...+.+.+..++++
T Consensus 71 ~~~~v~~~~g~~v~~id~~~~~V~-~~g~~~~~d~lViATGs~p~-~p~i~G--~~~v~~~~~~~~~~~l~~~~~~~~~v 146 (367)
T 1xhc_A 71 RKRGIEIRLAEEAKLIDRGRKVVI-TEKGEVPYDTLVLATGARAR-EPQIKG--KEYLLTLRTIFDADRIKESIENSGEA 146 (367)
T ss_dssp HHHTEEEECSCCEEEEETTTTEEE-ESSCEEECSEEEECCCEEEC-CCCSBT--GGGEECCCSHHHHHHHHHHHHHHSEE
T ss_pred HhCCcEEEECCEEEEEECCCCEEE-ECCcEEECCEEEECCCCCCC-CCCCCC--cCCEEEEcCHHHHHHHHHHhhcCCcE
Confidence 899999999888999999988888 77888999999999999887 455566 56788888888888877766667999
Q ss_pred EEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC
Q 011351 211 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 290 (488)
Q Consensus 211 vVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~ 290 (488)
+|||+|++|+|+|..|.++|.+|+++++.+++++ +++++.+.+.+.+++.||++++++++++++. . .+.+++
T Consensus 147 vViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~---~---~v~~~~ 218 (367)
T 1xhc_A 147 IIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LDEELSNMIKDMLEETGVKFFLNSELLEANE---E---GVLTNS 218 (367)
T ss_dssp EEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--CCHHHHHHHHHHHHHTTEEEECSCCEEEECS---S---EEEETT
T ss_pred EEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc--CCHHHHHHHHHHHHHCCCEEEcCCEEEEEEe---e---EEEECC
Confidence 9999999999999999999999999999999987 8999999999999999999999999999972 1 477888
Q ss_pred CcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHH
Q 011351 291 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC 370 (488)
Q Consensus 291 g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~ 370 (488)
|+ +++|.|++|+|++|+++++++++++.+ ++|.||+++||+.|||||+|||+...... ...+..|..||+.+
T Consensus 219 g~-i~~D~vi~a~G~~p~~~ll~~~gl~~~-~gi~Vd~~~~t~~~~IyA~GD~a~~~~~~------~~~~~~A~~qg~~a 290 (367)
T 1xhc_A 219 GF-IEGKVKICAIGIVPNVDLARRSGIHTG-RGILIDDNFRTSAKDVYAIGDCAEYSGII------AGTAKAAMEQARVL 290 (367)
T ss_dssp EE-EECSCEEEECCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEBTTBC------CCSHHHHHHHHHHH
T ss_pred CE-EEcCEEEECcCCCcCHHHHHhCCCCCC-CCEEECCCcccCCCCEEEeEeeeecCCCC------ccHHHHHHHHHHHH
Confidence 88 999999999999999999999999887 56999999999999999999999764321 23677899999999
Q ss_pred HHHHhcCCCCCCCCCCcee-EeccccCCCCcceeeEEeeCCCCcEEEEccCCCcEEEEEEECCEEEEEEeecCChHHhhH
Q 011351 371 IKALLSAQTHTYDYLPYFY-SRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQL 449 (488)
Q Consensus 371 a~~i~~~~~~~~~~~p~~~-~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 449 (488)
|+||++. ..+|...+.+| ..+++.. +..+|....+.... ..|.++++++++|+|+++ .+.......
T Consensus 291 a~~i~g~-~~~~~~~~~~~~~~~~~~~-------~~~vG~~~~~~~~~----~~~~k~~~~~~~ilG~~~-~g~~~~~~~ 357 (367)
T 1xhc_A 291 ADILKGE-PRRYNFKFRSTVFKFGKLQ-------IAIIGNTKGEGKWI----EDNTKVFYENGKIIGAVV-FNDIRKATK 357 (367)
T ss_dssp HHHHTTC-CCCCCSSCCEEEEEETTEE-------EEEEECCSSCEEEE----ETTEEEEC-----CEEEE-ESCHHHHHH
T ss_pred HHHhcCC-CccCCCCCCceEEEECCce-------EEEECCCCCCCccc----ceEEEEEEECCEEEEEEE-ECChHHHHH
Confidence 9999974 35566654444 3555432 66778765432211 447888888999999997 677777888
Q ss_pred HHHHH
Q 011351 450 LPTLA 454 (488)
Q Consensus 450 ~~~~~ 454 (488)
+++++
T Consensus 358 ~~~~i 362 (367)
T 1xhc_A 358 LEKEI 362 (367)
T ss_dssp HC---
T ss_pred HHHHH
Confidence 88876
No 10
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=100.00 E-value=1.3e-48 Score=401.27 Aligned_cols=407 Identities=18% Similarity=0.268 Sum_probs=312.0
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
+++||+|||||+||+++|..|++.|.++.+|+|||+++..+|....+.. ++......+..+ .....++
T Consensus 34 m~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~ 101 (490)
T 2bc0_A 34 WGSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNISFLGAGMAL-WIGEQIAGPEGL-----------FYSDKEE 101 (490)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCCSBCGGGHHH-HHTTSSSCSGGG-----------BSCCHHH
T ss_pred cCCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCCCccccccch-hhcCccCCHHHh-----------hhcCHHH
Confidence 3589999999999999999999987113489999999876654332211 111100111111 1345677
Q ss_pred HHHCCCeEEeCCcEEEEeCCCcEEEeC-CC--cEEEeccEEeccCCCCCcCCCCCCCC-----------CCcEEEecCHH
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQTLITN-SG--KLLKYGSLIVATGCTASRFPEKIGGY-----------LPGVHYIRDVA 195 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~~v~~~-~g--~~i~yd~lVlAtG~~~~~~~~~~g~~-----------~~gv~~~~~~~ 195 (488)
+++.+++++.+++|+.++++.+++.+. ++ .++.||+||||||+.|. .|+++|.+ .++++++++..
T Consensus 102 ~~~~gv~v~~~~~v~~i~~~~~~v~v~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~~~~~~~~f~~~~~~v~~~~~~~ 180 (490)
T 2bc0_A 102 LESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPI-LPPIKGAEIKEGSLEFEATLENLQFVKLYQ 180 (490)
T ss_dssp HHHTTCEEETTCCEEEEETTTTEEEEEETTEEEEEECSEEEECCCEEEC-CCSCBTCCBCTTCTTCCBSSTTEEECSSHH
T ss_pred HHhCCCEEEeCCEEEEEECCCCEEEEEeCCcEEEEECCEEEECCCCCcC-CCCCCCccccccccccccccCCEEEeCCHH
Confidence 888999999999999999988888876 54 46999999999999886 45667765 57889999999
Q ss_pred HHHHHHHhh--hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEE
Q 011351 196 DADALISSL--EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIK 273 (488)
Q Consensus 196 ~~~~~~~~~--~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~ 273 (488)
+++.+.+.. ..+++++|||+|.+|+|+|..|+++|.+|+++++.++++++.+++++.+.+.+.+++.||+++++++++
T Consensus 181 ~~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~ 260 (490)
T 2bc0_A 181 NSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVK 260 (490)
T ss_dssp HHHHHHHHTTSTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEETCCEE
T ss_pred HHHHHHHHhhhcCCceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhhHHHHHHHHHHHHHHHhCCeEEEeCCEEE
Confidence 988888877 678999999999999999999999999999999999999877899999999999999999999999999
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCC
Q 011351 274 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYD 352 (488)
Q Consensus 274 ~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~ 352 (488)
+++. ++.+..+.+ +|+++++|.||+|+|++|++++++.. +..+ +|+|.||+++||+.|+|||+|||+..+....+
T Consensus 261 ~i~~--~~~v~~v~~-~g~~i~~D~Vi~a~G~~p~~~ll~~~-l~~~~~G~I~Vd~~~~t~~~~IyA~GD~~~~~~~~~g 336 (490)
T 2bc0_A 261 EVAG--NGKVEKIIT-DKNEYDVDMVILAVGFRPNTTLGNGK-IDLFRNGAFLVNKRQETSIPGVYAIGDCATIYDNATR 336 (490)
T ss_dssp EEEC--SSSCCEEEE-SSCEEECSEEEECCCEEECCGGGTTC-SCBCTTSCBCCCTTCBCSSTTEEECGGGBCEEETTTT
T ss_pred EEEc--CCcEEEEEE-CCcEEECCEEEECCCCCcChHHHHhh-hccCCCCCEEECCCcccCCCCEEEeeeeEEeccccCC
Confidence 9984 344434555 67889999999999999999988777 7664 67799999999999999999999997655555
Q ss_pred cccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCceeEeccccCCCCcceeeEEeeCCCC-------cEEE-------Ec
Q 011351 353 RTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE-------IG 418 (488)
Q Consensus 353 ~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~~~~-------~~ 418 (488)
......++..|..||+.+|.||++.........|++|+.+|+.. +..+|.... +... ..
T Consensus 337 ~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~~~~~~~~~~~-------~~~vG~~~~~a~~~g~~~~~~~~~~~~~~ 409 (490)
T 2bc0_A 337 DTNYIALASNAVRTGIVAAHNACGTDLEGIGVQGSNGISIYGLH-------MVSTGLTLEKAKRLGFDAAVTEYTDNQKP 409 (490)
T ss_dssp EEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHTTCCEEEEEEEEESSC
T ss_pred ceeecccHHHHHHHHHHHHHHhcCCCCCCCCcccceEEEECCcE-------eEEeeCCHHHHHHcCCceEEEEEecCCcc
Confidence 44445678899999999999999743222334677888888643 556665431 1111 11
Q ss_pred cC-----CCcEEEEEEE--CCEEEEEEeecC-ChHHh-hHHHHHHhcCCCCCh-hh--hcCCCcHHHHHHHHHc
Q 011351 419 NF-----DPKIATFWID--SGKLKGVLVESG-SPEEF-QLLPTLARSQPFVDK-AK--LQQASSVEEALEIARA 480 (488)
Q Consensus 419 ~~-----~~~~~~~~~~--~~~~~g~~~~~~-~~~~~-~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~ 480 (488)
.+ ...+.+++++ +++|+|+++++. +..++ ..+..+|+++.+++. .. +..||+++|++..+..
T Consensus 410 ~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~~~~~~ 483 (490)
T 2bc0_A 410 EFIEHGNFPVTIKIVYDKDSRRILGAQMAAREDVSMGIHMFSLAIQEGVTIEKLALTDIFFLPHFNKPYNYITM 483 (490)
T ss_dssp TTCCSSCCEEEEEEEEETTTCBEEEEEEEESSCCTTHHHHHHHHHHHTCBHHHHHHSCCCCCTTTCCTTCHHHH
T ss_pred cccCCCCceEEEEEEEECCCCEEEEEEEEcCcCHHHHHHHHHHHHHcCCCHHHHhhcceecCCCCCchhHHHHH
Confidence 11 1246777764 599999998776 45554 456777888888863 32 5788999987665543
No 11
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=100.00 E-value=3.4e-48 Score=396.78 Aligned_cols=411 Identities=22% Similarity=0.320 Sum_probs=289.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
+++|+|||||+||++||..|++.+. +.+|+|||+++..+|.++.++. ++.........+.... .. .....+++
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~-g~~Vtvie~~~~~~~~~~gl~~-~~~g~~~~~~~~~~~~----~~-~~~~~~~~ 75 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDP-EAHVTMIDQASRISYGGCGIPY-YVSGEVSNIESLQATP----YN-VVRDPEFF 75 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCT-TSEEEEECCC--------------------------------------------
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCc-CCCEEEEECCCcccccccccch-hhcCCCCchHHhcccc----ch-hccCHHHH
Confidence 5799999999999999999999843 4499999999998888765553 2211111111110000 00 01223344
Q ss_pred H-HCCCeEEeCCcEEEEeCCCcEEEeCC---Cc--EEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhh
Q 011351 131 K-EKGIEMIYQDPVTSIDIEKQTLITNS---GK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL 204 (488)
Q Consensus 131 ~-~~~i~~~~~~~v~~id~~~~~v~~~~---g~--~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~ 204 (488)
. +.+++++.+++|+.++++.+.+.+.+ |+ .+.||+||+|||+.+. .|+++|.+.++++++++..+...+.+.+
T Consensus 76 ~~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~~~~v~~~~~~~~~~~l~~~l 154 (472)
T 3iwa_A 76 RINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKAN-RPPVEGMDLAGVTPVTNLDEAEFVQHAI 154 (472)
T ss_dssp -----CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCSCTTTTSBTEEECCSHHHHHHHHHHC
T ss_pred hhhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcC-CCCCCCCCCCCEEEeCCHHHHHHHHHHh
Confidence 4 57999999999999999998888764 65 7899999999999876 4667777678888888888887777655
Q ss_pred h--cCCeEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCC
Q 011351 205 E--KAKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG 281 (488)
Q Consensus 205 ~--~~~~vvVvG~G~~g~e~A~~l~~~-g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~ 281 (488)
. .+++++|||+|.+|+|+|..+.+. |.+|+++++.++++++.+++++.+.+.+.+++.||+++++++|++++.. ++
T Consensus 155 ~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~ 233 (472)
T 3iwa_A 155 SAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGE-NG 233 (472)
T ss_dssp CTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEES-SS
T ss_pred hcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEcc-CC
Confidence 3 478999999999999999999999 9999999999999986789999999999999999999999999999863 45
Q ss_pred cEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccH
Q 011351 282 RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV 360 (488)
Q Consensus 282 ~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~ 360 (488)
.+ .+.+.+|+++++|.||+|+|++|++++++++|+..+ +|+|.||++++|+.|||||+|||+..+....|......++
T Consensus 234 ~v-~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~ 312 (472)
T 3iwa_A 234 KV-ARVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGKPGFFPLG 312 (472)
T ss_dssp BE-EEEEESSCEEECSEEEECSCEEECCHHHHHHTCCBCTTCCEECCTTCBCSSTTEEECGGGEEEEBTTTSSEECCCCT
T ss_pred eE-EEEEeCCCEEEcCEEEECCCCCcCHHHHHhCCccCCCCCCEEECCCcccCCCCEEEeccceecccccCCceeecchH
Confidence 55 377889999999999999999999999988899875 6889999999999999999999998777655654445577
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCceeEeccccCCCCcceeeEEeeCCCCc-------E--EEEc---------cCCC
Q 011351 361 DHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IEIG---------NFDP 422 (488)
Q Consensus 361 ~~A~~~g~~~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~--~~~~---------~~~~ 422 (488)
..|..||+.+|+||++........+|++|+.+++.. +..+|....+ . .... ....
T Consensus 313 ~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~-------~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~ 385 (472)
T 3iwa_A 313 SMANRQGRVIGTNLADGDATFPGAVGSWAVKLFEGS-------ASGAGLTVEGALREGYDAVNVHVEQFDRAHFYPEKTI 385 (472)
T ss_dssp THHHHHHHHHHHHHTTCCCCCCCBCCCEEEECSSCE-------EEEEECCHHHHHHTTCCEEEEEEEC-----------C
T ss_pred HHHHHHHHHHHHHhcCCCccCCCCCcceEEEECCce-------eEEEECCHHHHHHcCCceEEEEEecCCccCccCCCce
Confidence 789999999999999755433335677887777643 5556654321 1 1110 1123
Q ss_pred cEEEEEEE--CCEEEEEEeecC---ChHH-hhHHHHHHhcCCCCC-hhh-hcCC-CcHHHHHHHH
Q 011351 423 KIATFWID--SGKLKGVLVESG---SPEE-FQLLPTLARSQPFVD-KAK-LQQA-SSVEEALEIA 478 (488)
Q Consensus 423 ~~~~~~~~--~~~~~g~~~~~~---~~~~-~~~~~~~~~~~~~~~-~~~-~~~~-~~~~~~~~~~ 478 (488)
.+.|+.++ +++|+|+++++. .+.+ +..+..+|+++.+++ ... .+.+ |+++|++...
T Consensus 386 ~~~kli~~~~~~~ilG~~~~g~~~~~~~~~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~~~~~ 450 (472)
T 3iwa_A 386 MTLQLVVDRPTRRVLGIQGFSTLGDALTARINAVATMLASKPTVEDISNAEVVYSPPFASAMDIV 450 (472)
T ss_dssp EEEEEEEETTTCBEEEEEEEESCHHHHHHHHHHHHHHHTTCCBHHHHHTCCCC--------CCHH
T ss_pred EEEEEEEECCCCEEEEEEEECCCcccHHHHHHHHHHHHHcCCCHHHHhcccccCCCCCCCcccHH
Confidence 47788774 699999998666 2234 445566678888876 333 3444 8888876544
No 12
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=100.00 E-value=5.5e-48 Score=392.96 Aligned_cols=397 Identities=19% Similarity=0.223 Sum_probs=300.8
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK 131 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (488)
+||+|||||+||++||.+|++.+. +.+|+|||+++...|.++.+.. ++.........+ .....+++.
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~-g~~V~vie~~~~~g~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~ 69 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYP-QAEISLIDKQATVGYLSGGLSA-YFNHTINELHEA-----------RYITEEELR 69 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCS-SSEEEEECSSSCCSSCCC----------------------------CCCCHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHhhCc-CCcEEEEECCCCCcccCccchh-hhcCCCCCHHHh-----------hcCCHHHHH
Confidence 699999999999999999999843 4499999999988876554432 221111111111 134678889
Q ss_pred HCCCeEEeCCcEEEEeCCCcEEEeC---CCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCC
Q 011351 132 EKGIEMIYQDPVTSIDIEKQTLITN---SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK 208 (488)
Q Consensus 132 ~~~i~~~~~~~v~~id~~~~~v~~~---~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~ 208 (488)
+.+++++.+++|+.++++.+.+.+. ++.++.||+||||||+.|. .|+++|.+.+++++.++..+...+.+....++
T Consensus 70 ~~gi~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~-~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~ 148 (452)
T 3oc4_A 70 RQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQF-STQIRGSQTEKLLKYKFLSGALAAVPLLENSQ 148 (452)
T ss_dssp HTTEEEECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCCBC-CCCCBTTTCTTEEEGGGCC----CCHHHHTCS
T ss_pred HCCCEEEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCcccC-CCCCCCCCCCCEEEeCCHHHHHHHHHHHhcCC
Confidence 9999999999999999999888763 5567999999999999887 46677877788888887777777666667899
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 288 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l 288 (488)
+++|||+|.+|+|+|..|.+.|.+|+++++.++++++.+++++.+.+.+.+++.||+++++++|++++.. ++.+ .+.+
T Consensus 149 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v-~v~~ 226 (452)
T 3oc4_A 149 TVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEET-ANGI-VLET 226 (452)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEEC-SSCE-EEEE
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEcc-CCeE-EEEE
Confidence 9999999999999999999999999999999999987789999999999999999999999999999854 4455 6777
Q ss_pred CCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHH
Q 011351 289 EDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSA 367 (488)
Q Consensus 289 ~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g 367 (488)
++| ++++|.||+|+|++|++++++.. +..+ +|+|.||+++||+.|+|||+|||+..+....+.......+..|..||
T Consensus 227 ~~g-~i~aD~Vv~A~G~~p~~~~l~~~-~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g 304 (452)
T 3oc4_A 227 SEQ-EISCDSGIFALNLHPQLAYLDKK-IQRNLDQTIAVDAYLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTG 304 (452)
T ss_dssp SSC-EEEESEEEECSCCBCCCSSCCTT-SCBCTTSCBCCCTTCBCSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHHH
T ss_pred CCC-EEEeCEEEECcCCCCChHHHHhh-hccCCCCCEEECcCccCCCCCEEEEEeeEEeccccCCceeecchHHHHHHHH
Confidence 777 89999999999999999887654 5554 67899999999999999999999987655445444445788899999
Q ss_pred HHHHHHHhcCCCCCCC-CCCceeEeccccCCCCcceeeEEeeCCCCc-------E--EEEc-------cCCCcEEEEEEE
Q 011351 368 QHCIKALLSAQTHTYD-YLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IEIG-------NFDPKIATFWID 430 (488)
Q Consensus 368 ~~~a~~i~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~--~~~~-------~~~~~~~~~~~~ 430 (488)
+.+|.||++.. ..+. ..+..++.+|+.. +..+|....+ . .... .....+.|+.++
T Consensus 305 ~~aa~~i~g~~-~~~~~~~~~~~~~~~~~~-------~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~kli~~ 376 (452)
T 3oc4_A 305 LVVANNLEEKT-HRFIGSLRTMGTKVGDYY-------LASTGLTETEGLFFPQTLASIIVRQPAPPLQHGTEILGKLIYD 376 (452)
T ss_dssp HHHTTSSSSCC-CCCCCCCCCEEEEETTEE-------EEEEECCSGGGGGSSSCEEEEEEEEECTTTTCSCEEEEEEEEE
T ss_pred HHHHHHhcCCC-ccCCCccccEEEEEcCee-------EEEecCCHHHHHHCCCceEEEEEecCCccCCCCCeEEEEEEEE
Confidence 99999999753 3333 2345566777642 5556654321 1 1110 112357888876
Q ss_pred C--CEEEEEEeecC-ChHHhh-HHHHHHhcCCCCC-hhh--hcCCCcHHHH
Q 011351 431 S--GKLKGVLVESG-SPEEFQ-LLPTLARSQPFVD-KAK--LQQASSVEEA 474 (488)
Q Consensus 431 ~--~~~~g~~~~~~-~~~~~~-~~~~~~~~~~~~~-~~~--~~~~~~~~~~ 474 (488)
. ++|+|+++++. ++.++. .+..+|+++.+++ ... +..||+++|+
T Consensus 377 ~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~ 427 (452)
T 3oc4_A 377 KVTQRVLGAQLCSKNNCLEKINTLALSIQTGQTLTDLLQKDYFYQPSLTNI 427 (452)
T ss_dssp TTTCBEEEEEEEESSCCTHHHHHHHHHHHTTCBHHHHHTCCCCCCTTTSCS
T ss_pred CCCCEEEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHHhhHhccCCCCCCc
Confidence 4 99999998776 566644 5566788888876 332 4678888873
No 13
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=100.00 E-value=1.8e-48 Score=396.73 Aligned_cols=403 Identities=20% Similarity=0.262 Sum_probs=310.8
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCC--CCCCCCCcccccCCCCCCCCHhH
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK--KPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
+||+|||||+||+++|..|++.+. +.+|+|||+++..+|....+.. ++..... .+.. ......++
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~-g~~V~lie~~~~~~~~~~~~~~-~~~g~~~~~~~~~-----------~~~~~~~~ 67 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHP-DADVTAYEMNDNISFLSCGIAL-YLGKEIKNNDPRG-----------LFYSSPEE 67 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCT-TCEEEEEESSSCCCBCGGGHHH-HHTTCBGGGCGGG-----------GBSCCHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhhCc-CCcEEEEECCCCCCcccccchh-hhcCCcccCCHHH-----------hhhcCHHH
Confidence 489999999999999999999832 3499999999876665332211 1111000 0111 12345677
Q ss_pred HHHCCCeEEeCCcEEEEeCCCcEEEeCC-----CcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhh
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQTLITNS-----GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL 204 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~-----g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~ 204 (488)
+++.+++++.+++|+.++.+.+++.+.+ ++++.||+||+|||+.+. .|+++|.+.++++++++..+...+.+..
T Consensus 68 ~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~-~p~i~g~~~~~v~~~~~~~~~~~~~~~~ 146 (452)
T 2cdu_A 68 LSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPT-VPPIPGIDSSRVYLCKNYNDAKKLFEEA 146 (452)
T ss_dssp HHHTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCCCTTTTSTTEEECSSHHHHHHHHHHG
T ss_pred HHHcCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcC-CCCCCCCCCCCEEEeCcHHHHHHHHHHh
Confidence 8889999988888999998888887754 467999999999999886 4566776667899999999998888888
Q ss_pred hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEE
Q 011351 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 284 (488)
Q Consensus 205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~ 284 (488)
..+++++|||+|.+|+|+|..|.+.|.+|+++++.++++++.+++++.+.+.+.+++.||+++++++|++++.. ++++.
T Consensus 147 ~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~v~ 225 (452)
T 2cdu_A 147 PKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEV-DDEII 225 (452)
T ss_dssp GGCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEEE-TTEEE
T ss_pred ccCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEcC-CCeEE
Confidence 88999999999999999999999999999999999999987789999999999999999999999999999853 45554
Q ss_pred EEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHH
Q 011351 285 AVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA 363 (488)
Q Consensus 285 ~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A 363 (488)
.+.+ +|+++++|.||+|+|++|++++++.. +..+ +|+|.||+++||+.|||||+|||+..+....+......++..|
T Consensus 226 ~v~~-~g~~i~~D~vv~a~G~~p~~~ll~~~-l~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A 303 (452)
T 2cdu_A 226 TKTL-DGKEIKSDIAILCIGFRPNTELLKGK-VAMLDNGAIITDEYMHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATNA 303 (452)
T ss_dssp EEET-TSCEEEESEEEECCCEEECCGGGTTT-SCBCTTSCBCCCTTSBCSSTTEEECSTTBCEEETTTTEEECCCCHHHH
T ss_pred EEEe-CCCEEECCEEEECcCCCCCHHHHHHh-hhcCCCCCEEECCCcCcCCCCEEEcceEEEeccccCCCeeecchHHHH
Confidence 5555 78889999999999999999988877 7764 6779999999999999999999999766555554445688899
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCceeEeccccCCCCcceeeEEeeCCCC-------cEE---E--Ec------cCCCcEE
Q 011351 364 RQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETI---E--IG------NFDPKIA 425 (488)
Q Consensus 364 ~~~g~~~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~~~---~--~~------~~~~~~~ 425 (488)
..||+.+|+||++.........|++|+.+|+.. +..+|.... +.. . .. .....+.
T Consensus 304 ~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~-------~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (452)
T 2cdu_A 304 VRQGRLVGLNLTEDKVKDMGTQSSSGLKLYGRT-------YVSTGINTALAKANNLKVSEVIIADNYRPEFMLSTDEVLM 376 (452)
T ss_dssp HHHHHHHHHTSSSCCCCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHTTCCCEEEEEEEESSCTTBSCCCEEEE
T ss_pred HHHHHHHHHHhCCCCCcCCCccceEEEEECCee-------eEeecCCHHHHHHcCCceEEEEEecCCccccCCCCceEEE
Confidence 999999999999743222334678888888643 556665431 111 0 00 1112467
Q ss_pred EEEEE--CCEEEEEEeecC-ChHHh-hHHHHHHhcCCCCCh-hh--hcCCCcHHHHHHHH
Q 011351 426 TFWID--SGKLKGVLVESG-SPEEF-QLLPTLARSQPFVDK-AK--LQQASSVEEALEIA 478 (488)
Q Consensus 426 ~~~~~--~~~~~g~~~~~~-~~~~~-~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~ 478 (488)
+++++ +++|+|+++++. +..++ ..+..+|+++.+++. .. +..||+++|++..+
T Consensus 377 k~~~~~~~~~ilG~~~~g~~~~~~~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~~~~ 436 (452)
T 2cdu_A 377 SLVYDPKTRVILGGALSSMHDVSQSANVLSVCIQNKNTIDDLAMVDMLFQPQFDRPFNYL 436 (452)
T ss_dssp EEEECTTTCBEEEEEEEESSCCHHHHHHHHHHHHTTCBHHHHHHSCCCCCTTTCCSSCHH
T ss_pred EEEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhhhhccCCCCCchHHHH
Confidence 77774 599999998776 56554 455677888888763 32 47789998875544
No 14
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.3e-47 Score=388.25 Aligned_cols=399 Identities=21% Similarity=0.259 Sum_probs=301.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
++++|+|||||+||+++|..|++.+. +.+|+|||+++...|....++. ++... .....+ .....++
T Consensus 2 ~~~~VvIIGgG~aGl~aA~~L~~~~~-~~~V~vie~~~~~~~~~~~~p~-~~~~~-~~~~~~-----------~~~~~~~ 67 (449)
T 3kd9_A 2 SLKKVVIIGGGAAGMSAASRVKRLKP-EWDVKVFEATEWVSHAPCGIPY-VVEGL-STPDKL-----------MYYPPEV 67 (449)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSSSCCC-------------------------------------CT
T ss_pred CcCcEEEECCcHHHHHHHHHHHHhCc-CCCEEEEECCCccccCCcCCcc-ccCCC-CCHHHh-----------hhcCHHH
Confidence 35799999999999999999999853 4599999999987665433332 11111 111111 1223344
Q ss_pred H-HHCCCeEEeCCcEEEEeCCCcEEEeCCC-cEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhh--
Q 011351 130 Y-KEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE-- 205 (488)
Q Consensus 130 ~-~~~~i~~~~~~~v~~id~~~~~v~~~~g-~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~-- 205 (488)
+ ++.+++++.+++|+.++++.+.+.+.++ .++.||+||||||+.+. .|+++|.+.+++++.++..+...+.+...
T Consensus 68 ~~~~~gi~v~~~~~v~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~-~p~i~G~~~~~v~~~~~~~~~~~~~~~~~~~ 146 (449)
T 3kd9_A 68 FIKKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQ-VPAIEGVNLKGVFTADLPPDALAIREYMEKY 146 (449)
T ss_dssp HHHHTTCEEETTCEEEEECSSEEEEECSSSEEEEECSEEEECCCEEEC-CCSCBTTTSTTEECSCSTHHHHHHHHHHSSS
T ss_pred HHHhcCcEEEecCEEEEEecCCCEEEECCceEEEEcCEEEECCCCCCC-CCCCCCCCCCCEEEeCCHHHHHHHHHHHHhc
Confidence 4 6889999999899999998888888877 47999999999999886 56677877788888888888877777665
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 285 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~ 285 (488)
.+++++|||+|.+|+|+|..|.+.|.+|+++++.++++++.+++++.+.+.+.+++. |++++++.+++++.+ +.+..
T Consensus 147 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~--~~v~~ 223 (449)
T 3kd9_A 147 KVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKH-VNLRLQEITMKIEGE--ERVEK 223 (449)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTT-SEEEESCCEEEEECS--SSCCE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhC-cEEEeCCeEEEEecc--CcEEE
Confidence 789999999999999999999999999999999999998768999999999999999 999999999999853 23333
Q ss_pred EEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHH
Q 011351 286 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR 364 (488)
Q Consensus 286 v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~ 364 (488)
+ +.+++++++|.||+|+|++|++++++.+|++.+ +|+|.||++++|+.|||||+|||+..+....|.......+..|.
T Consensus 224 v-~~~g~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~ 302 (449)
T 3kd9_A 224 V-VTDAGEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAETRHVITGRRVWVPLAPAGN 302 (449)
T ss_dssp E-EETTEEEECSEEEECSCEEECCHHHHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBCEEBTTTCSEECCCCHHHHH
T ss_pred E-EeCCCEEECCEEEEeeCCccCHHHHHhCCccCCCCCCEEECCCCccCCCCEEEeeeeeeeccccCCceEEeccHHHHH
Confidence 3 457788999999999999999999999999876 57799999999999999999999987765555544456888999
Q ss_pred HHHHHHHHHHhcCCCCCC-CCCCceeEeccccCCCCcceeeEEeeCCCC-------cEEE-----Ec------cCCCcEE
Q 011351 365 QSAQHCIKALLSAQTHTY-DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE-----IG------NFDPKIA 425 (488)
Q Consensus 365 ~~g~~~a~~i~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~~~~-----~~------~~~~~~~ 425 (488)
.||+.+|+||++... .+ ...|++|+.+++.. +..+|.... +... .+ +....|.
T Consensus 303 ~~g~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~-------~~~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (449)
T 3kd9_A 303 KMGYVAGSNIAGKEL-HFPGVLGTAVTKFMDVE-------IGKTGLTEMEALKEGYDVRTAFIKASTRPHYYPGGREIWL 374 (449)
T ss_dssp HHHHHHHHHHTTCCC-CCCCBCCCEEEEETTEE-------EEEEECCHHHHHHTTCCEEEEEEEEESSCTTSTTCCEEEE
T ss_pred HHHHHHHHHhcCCCc-cCCCcccceEEEEcCcE-------EEEecCCHHHHHHCCCceEEEEEecCCccccCCCCceEEE
Confidence 999999999997543 44 34577788777654 566665432 1110 11 0113477
Q ss_pred EEEEEC--CEEEEEEeecCChHHhhHH-HHHHhcCCCCC-hhh--hcCCCcHHHHH
Q 011351 426 TFWIDS--GKLKGVLVESGSPEEFQLL-PTLARSQPFVD-KAK--LQQASSVEEAL 475 (488)
Q Consensus 426 ~~~~~~--~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~~~~~~ 475 (488)
|+.++. ++|+|+++++.++.++... ..+|+.+.+++ ... +..+|+++++.
T Consensus 375 kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~~~~ 430 (449)
T 3kd9_A 375 KGVVDNETNRLLGVQVVGSDILPRIDTAAAMLMAGFTTKDAFFTDLAYAPPFAPVW 430 (449)
T ss_dssp EEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTCCCCCBTTTBCSS
T ss_pred EEEEECCCCEEEEEEEEChHHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCCch
Confidence 887764 9999999988887776644 55678888775 332 35567776544
No 15
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=100.00 E-value=2.1e-46 Score=373.46 Aligned_cols=369 Identities=21% Similarity=0.272 Sum_probs=289.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCC-CCHh
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER-QTPE 128 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 128 (488)
+++||+|||||+||++||..|++.|. +.+|+|+|+++...|.++.++..+.. ......+ .. ....
T Consensus 3 ~~~dvvIIG~G~aGl~aA~~l~~~g~-~~~V~lie~~~g~~~~~~~l~~~~~~--~~~~~~~-----------~~~~~~~ 68 (384)
T 2v3a_A 3 ERAPLVIIGTGLAGYNLAREWRKLDG-ETPLLMITADDGRSYSKPMLSTGFSK--NKDADGL-----------AMAEPGA 68 (384)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHTTCS-SSCEEEECSSCCCEECGGGGGGTTTT--TCCHHHH-----------EEECHHH
T ss_pred CCCcEEEECChHHHHHHHHHHHhhCC-CCCEEEEECCCCCccCcccccHHHhC--CCCHHHh-----------hccCHHH
Confidence 35899999999999999999999986 56899999998777777666542211 1111110 01 2345
Q ss_pred HHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCC
Q 011351 129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK 208 (488)
Q Consensus 129 ~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~ 208 (488)
++++.+++++.+++|+.++++.++|.+.+ .++.||+||+|||+.+. .|++++.+.+++++.+++.+...+...+..++
T Consensus 69 ~~~~~~v~~~~~~~v~~i~~~~~~v~~~~-~~~~~d~lviAtG~~p~-~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~ 146 (384)
T 2v3a_A 69 MAEQLNARILTHTRVTGIDPGHQRIWIGE-EEVRYRDLVLAWGAEPI-RVPVEGDAQDALYPINDLEDYARFRQAAAGKR 146 (384)
T ss_dssp HHHHTTCEEECSCCCCEEEGGGTEEEETT-EEEECSEEEECCCEEEC-CCCCBSTTTTCEEECSSHHHHHHHHHHHTTCC
T ss_pred HHHhCCcEEEeCCEEEEEECCCCEEEECC-cEEECCEEEEeCCCCcC-CCCCCCcCcCCEEEECCHHHHHHHHHhhccCC
Confidence 66788999998888999999888898865 46999999999999886 45667765678899999998888877777899
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 288 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l 288 (488)
+++|||+|.+|+|+|..|.+.|.+|+++++.++++++.+++.+.+.+.+.+++.||++++++++++++.++ +. ..+.+
T Consensus 147 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~-~~-~~v~~ 224 (384)
T 2v3a_A 147 RVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAG-EG-LEAHL 224 (384)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEET-TE-EEEEE
T ss_pred eEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecC-CE-EEEEE
Confidence 99999999999999999999999999999999999876799999999999999999999999999998643 33 36788
Q ss_pred CCCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHH
Q 011351 289 EDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ 368 (488)
Q Consensus 289 ~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~ 368 (488)
++|+++++|.||+|+|.+|++++++++|+..++| |.||++++|+.|+|||+|||+..+... ..++..|..||+
T Consensus 225 ~~g~~i~~d~vv~a~G~~p~~~l~~~~g~~~~~g-i~vd~~~~t~~~~IyA~GD~~~~~~~~------~~~~~~a~~~g~ 297 (384)
T 2v3a_A 225 SDGEVIPCDLVVSAVGLRPRTELAFAAGLAVNRG-IVVDRSLRTSHANIYALGDCAEVDGLN------LLYVMPLMACAR 297 (384)
T ss_dssp TTSCEEEESEEEECSCEEECCHHHHHTTCCBSSS-EEECTTCBCSSTTEEECGGGEEETTBC------CCSHHHHHHHHH
T ss_pred CCCCEEECCEEEECcCCCcCHHHHHHCCCCCCCC-EEECCCCCCCCCCEEEeeeeeeECCCC------cchHHHHHHHHH
Confidence 8999999999999999999998999999988765 999999999999999999999754321 236778999999
Q ss_pred HHHHHHhcCCCCCCC--CCCceeEeccccCCCCcceeeEEeeCCCC---cEEEEccCCCcEEEEEEE-CCEEEEEEeecC
Q 011351 369 HCIKALLSAQTHTYD--YLPYFYSRVFEYEGSPRKVWWQFFGDNVG---ETIEIGNFDPKIATFWID-SGKLKGVLVESG 442 (488)
Q Consensus 369 ~~a~~i~~~~~~~~~--~~p~~~~~~~~~~g~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~ 442 (488)
.+|+||++.. .++. .+|+++ |.. + ..++..|.... .....++ ...+.+++++ +|+|+|+++++.
T Consensus 298 ~~a~~i~g~~-~~~~~~~~p~~~---~~~-~----~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~~i~G~~~~g~ 367 (384)
T 2v3a_A 298 ALAQTLAGNP-SQVAYGPMPVTV---KTP-A----CPLVVSPPPRGMDGQWLVEGS-GTDLKVLCRDTAGRVIGYALTGA 367 (384)
T ss_dssp HHHHHHTTCC-CCCCCCCCCEEE---CCT-T----SCEEEECCCTTCCCEEEEEEE-TTEEEEEEECTTSCEEEEEEEGG
T ss_pred HHHHHhcCCC-ccCCCCCcceEE---EEC-C----eeEEEecCCCCCCceEEEEec-CCcEEEEEEccCCEEEEEEEECc
Confidence 9999999743 4444 466532 111 1 12555665422 2222333 3457788775 799999998777
Q ss_pred ChHHhhHHHHH
Q 011351 443 SPEEFQLLPTL 453 (488)
Q Consensus 443 ~~~~~~~~~~~ 453 (488)
.+.++..+.+.
T Consensus 368 ~a~e~~~~~~~ 378 (384)
T 2v3a_A 368 AVNEKLALNKE 378 (384)
T ss_dssp GGGGHHHHHTT
T ss_pred chHHHHHHHHh
Confidence 77776555443
No 16
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=100.00 E-value=1.2e-46 Score=385.76 Aligned_cols=403 Identities=20% Similarity=0.309 Sum_probs=306.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
++||+|||||+||++||..|++.+. ..+|+|||+++..+|.++.++. ++.........+ .....+++
T Consensus 36 ~~dvvIIG~G~aGl~aA~~l~~~~~-g~~V~lie~~~~~~~~~~~~~~-~~~~~~~~~~~l-----------~~~~~~~~ 102 (480)
T 3cgb_A 36 SMNYVIIGGDAAGMSAAMQIVRNDE-NANVVTLEKGEIYSYAQCGLPY-VISGAIASTEKL-----------IARNVKTF 102 (480)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHCT-TCEEEEECSSSCCSBCGGGHHH-HHTTSSSCGGGG-----------BSSCHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHhhCc-CCcEEEEECCCCCCCCCCCcch-hhcCCcCCHHHh-----------hhcCHHHH
Confidence 4699999999999999999999742 3489999999887776544332 111110111111 12345566
Q ss_pred -HHCCCeEEeCCcEEEEeCCCcEEEeCC---Cc--EEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhh
Q 011351 131 -KEKGIEMIYQDPVTSIDIEKQTLITNS---GK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL 204 (488)
Q Consensus 131 -~~~~i~~~~~~~v~~id~~~~~v~~~~---g~--~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~ 204 (488)
+..+++++.+++|+.++.+.+.+.+.+ |+ ++.||+||+|||+.+. .|+++|.+.++++++++..+...+.+.+
T Consensus 103 ~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~~~~v~~~~~~~~~~~l~~~~ 181 (480)
T 3cgb_A 103 RDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPV-MPEWEGRDLQGVHLLKTIPDAERILKTL 181 (480)
T ss_dssp HHTTCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCCCBTTTSBTEECCSSHHHHHHHHHHH
T ss_pred HhhcCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCccc-CCCCCCccCCCEEEeCCHHHHHHHHHHh
Confidence 445999999889999999888887753 66 7999999999999886 4566776667888888888887777666
Q ss_pred h--cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCc
Q 011351 205 E--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR 282 (488)
Q Consensus 205 ~--~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~ 282 (488)
. .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ .+++++.+.+.+.+++.||++++++++++++.+ +.
T Consensus 182 ~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~ 258 (480)
T 3cgb_A 182 ETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT-IYDGDMAEYIYKEADKHHIEILTNENVKAFKGN--ER 258 (480)
T ss_dssp HSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS-SSCHHHHHHHHHHHHHTTCEEECSCCEEEEEES--SB
T ss_pred hhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhh-cCCHHHHHHHHHHHHHcCcEEEcCCEEEEEEcC--Cc
Confidence 5 789999999999999999999999999999999999887 479999999999999999999999999999853 44
Q ss_pred EEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHH
Q 011351 283 VAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD 361 (488)
Q Consensus 283 v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~ 361 (488)
+..+.++ +.++++|.||+|+|++|+.++++.+|+..+ +|+|.||++++|+.|+|||+|||+..+....|....+.++.
T Consensus 259 v~~v~~~-~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~~~G~I~Vd~~~~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~ 337 (480)
T 3cgb_A 259 VEAVETD-KGTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCATHYHVIKEIHDHIPIGT 337 (480)
T ss_dssp EEEEEET-TEEEECSEEEECSCEEESCGGGTTSCCCBCTTSCBCCCTTSBCSSTTEEECGGGBCEEBTTTCSEECCCCHH
T ss_pred EEEEEEC-CCEEEcCEEEECcCCCcChHHHHhCCcccCCCCCEEECCCccCCCCCEEEeeeEEEecCCCCCcceecchHH
Confidence 5456665 457999999999999999999999998875 67899999999999999999999987665445443445788
Q ss_pred HHHHHHHHHHHHHhcCCCCCCC-CCCceeEeccccCCCCcceeeEEeeCCCC-------c--E-EEEccC--------CC
Q 011351 362 HARQSAQHCIKALLSAQTHTYD-YLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------E--T-IEIGNF--------DP 422 (488)
Q Consensus 362 ~A~~~g~~~a~~i~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~--~-~~~~~~--------~~ 422 (488)
.|..||+.+|.+|++.. .++. ..+++|+.+++.. +..+|.... + . ...... ..
T Consensus 338 ~A~~qg~~aa~~i~g~~-~~~~~~~~~~~~~~~~~~-------~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~ 409 (480)
T 3cgb_A 338 TANKQGRLAGLNMLDKR-RAFKGTLGTGIIKFMNLT-------LARTGLNEKEAKGLHIPYKTVKVDSTNMAGYYPNAKP 409 (480)
T ss_dssp HHHHHHHHHHHHHTTCC-CCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHTTCCEEEEEEEEESSCTTSTTCCE
T ss_pred HHHHHHHHHHHHhcCCC-ccCCCccceeEEEECCcE-------EEEeCCCHHHHHHcCCceEEEEEecCCcccccCCCce
Confidence 99999999999999743 3443 3456677777643 556665422 1 1 111110 12
Q ss_pred cEEEEEEE--CCEEEEEEeecCC-hHH-hhHHHHHHhcCCCCCh-hh--hcCCCcHHHHHHHHH
Q 011351 423 KIATFWID--SGKLKGVLVESGS-PEE-FQLLPTLARSQPFVDK-AK--LQQASSVEEALEIAR 479 (488)
Q Consensus 423 ~~~~~~~~--~~~~~g~~~~~~~-~~~-~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~ 479 (488)
.+.+++++ +|+|+|+++++.. +.+ +..+..+|+++.+++. .. +..||+++|++..+.
T Consensus 410 ~~~kl~~~~~~~~ilG~~~vg~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~~~~~ 473 (480)
T 3cgb_A 410 LYLKLLYRSDTKQLLGGQVIGEEGVDKRIDVIAMALFNKMSIHDLEDVDLSYAPPYNSVWDPIQ 473 (480)
T ss_dssp EEEEEEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCCTTTCCSSCHHH
T ss_pred EEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHHHHhhcccccCCCCCCchhHHH
Confidence 36777774 6999999987776 555 4456777899988863 33 357899998765543
No 17
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=100.00 E-value=3.4e-47 Score=386.74 Aligned_cols=402 Identities=19% Similarity=0.257 Sum_probs=305.6
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK 131 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (488)
+||||||||+||++||..|++.+. +.+|+|||+++..+|....+.. ++.........+ .....++++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~-g~~V~lie~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~ 67 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHP-DAEIQWYEKGDFISFLSAGMQL-YLEGKVKDVNSV-----------RYMTGEKME 67 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCT-TSEEEEEESSSSSSBCGGGHHH-HHTTSSCCGGGS-----------BSCCHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHhCc-CCeEEEEECCCccCcccccchh-hhcCccCCHHHh-----------hcCCHHHHH
Confidence 489999999999999999999842 3489999999876664332211 111110011111 234567888
Q ss_pred HCCCeEEeCCcEEEEeCCCcEEEeCC---Cc--EEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhh-
Q 011351 132 EKGIEMIYQDPVTSIDIEKQTLITNS---GK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE- 205 (488)
Q Consensus 132 ~~~i~~~~~~~v~~id~~~~~v~~~~---g~--~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~- 205 (488)
+.+++++.+++|+.++++.++|.+.+ |+ ++.||+||||||+.+. .|+++|.+.++++++++..+...+.+.+.
T Consensus 68 ~~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~ 146 (447)
T 1nhp_A 68 SRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPF-ELDIPGKDLDNIYLMRGRQWAIKLKQKTVD 146 (447)
T ss_dssp HTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCCSTTTTSBSEECCCHHHHHHHHHHHHTC
T ss_pred HCCCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcC-CCCCCCCCCCCeEEECCHHHHHHHHHHhhh
Confidence 89999988999999999888888754 65 4899999999999886 45677766678888888888877777666
Q ss_pred -cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEE
Q 011351 206 -KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 284 (488)
Q Consensus 206 -~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~ 284 (488)
.+++++|||+|++|+|+|..|.+.|.+|+++++.++++++.+++++.+.+.+.+++.||+++++++|++++.+ +.+.
T Consensus 147 ~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~--~~v~ 224 (447)
T 1nhp_A 147 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQ 224 (447)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECS--SBCC
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEcc--CcEE
Confidence 7899999999999999999999999999999999999886789999999999999999999999999999853 4443
Q ss_pred EEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHH
Q 011351 285 AVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA 363 (488)
Q Consensus 285 ~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A 363 (488)
.+.+ +++++++|.||+|+|.+|+.++++.. ++.+ +|+|.||++++|+.|+|||+|||+..+....+......++..|
T Consensus 225 ~v~~-~~~~i~~d~vi~a~G~~p~~~~~~~~-~~~~~~G~i~Vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A 302 (447)
T 1nhp_A 225 KVVT-DKNAYDADLVVVAVGVRPNTAWLKGT-LELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNA 302 (447)
T ss_dssp EEEE-SSCEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCCTTCBCSSTTEEECGGGSCEEEGGGTEEECCCCHHHH
T ss_pred EEEE-CCCEEECCEEEECcCCCCChHHHHhh-hhhcCCCcEEECccccCCCCCEEEeeeEEEeeccCCCCceechhHHHH
Confidence 4555 56789999999999999999988877 7664 5779999999999999999999998765444544445688899
Q ss_pred HHHHHHHHHHHhcCCCCCCC-CCCceeEeccccCCCCcceeeEEeeCCCCc-------EE---E--Ecc------CCCcE
Q 011351 364 RQSAQHCIKALLSAQTHTYD-YLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI---E--IGN------FDPKI 424 (488)
Q Consensus 364 ~~~g~~~a~~i~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~~---~--~~~------~~~~~ 424 (488)
..||+.+|.||++.. .++. ..+++|+.+++.. +..+|....+ .. . ... ....+
T Consensus 303 ~~qg~~aa~~i~g~~-~~~~~~~~~~~~~~~~~~-------~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 374 (447)
T 1nhp_A 303 RKQGRFAVKNLEEPV-KPFPGVQGSSGLAVFDYK-------FASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAW 374 (447)
T ss_dssp HHHHHHHHHTSSSCC-CCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHHTCCCEEEEEEEESSCTTCTTCCEEE
T ss_pred HHHHHHHHHhhcCCC-CCCCCccccEEEEECCee-------eEEecCCHHHHHHcCCceEEEEEEcCCccccCCCCceEE
Confidence 999999999999743 3333 4577888777643 5556644210 10 1 110 11236
Q ss_pred EEEEEE--CCEEEEEEeecCC-hHHh-hHHHHHHhcCCCCCh-hh--hcCCCcHHHHHHHHH
Q 011351 425 ATFWID--SGKLKGVLVESGS-PEEF-QLLPTLARSQPFVDK-AK--LQQASSVEEALEIAR 479 (488)
Q Consensus 425 ~~~~~~--~~~~~g~~~~~~~-~~~~-~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~ 479 (488)
.+++++ +++|+|+++++.. +.++ ..+..+|+++.+++. .. +..|||++|++..+.
T Consensus 375 ~k~~~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~~~~~ 436 (447)
T 1nhp_A 375 FKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYADFFFQPAFDKPWNIIN 436 (447)
T ss_dssp EEEEECTTTCBEEEEEEEESSCCTTHHHHHHHHHHTTCBHHHHHTCCCCCCTTTCCSSCHHH
T ss_pred EEEEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhcceecCCCCCCcccHHH
Confidence 777775 5999999987776 5554 456677899988873 32 467899988765553
No 18
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=100.00 E-value=4.7e-46 Score=389.89 Aligned_cols=386 Identities=19% Similarity=0.335 Sum_probs=300.3
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK 131 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (488)
++|+|||||+||++||.+|++.+. +.+|+|||+++..+|.++.++. ++.......... .....+++.
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~-~~~V~lie~~~~~~~~~~~l~~-~~~~~~~~~~~~-----------~~~~~~~~~ 68 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSE-TAEIIMFERGEYVSFANCGLPY-HISGEIAQRSAL-----------VLQTPESFK 68 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCS-SSEEEEECSSSCSSBCGGGHHH-HHTSSSCCGGGG-----------BCCCHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhhCc-CCCEEEEECCCCccccccCchH-HhcCCcCChHHh-----------hccCHHHHH
Confidence 689999999999999999999854 5599999999998887655542 221111111100 123445554
Q ss_pred -HCCCeEEeCCcEEEEeCCCcEEEeCC---Cc--EEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhh-
Q 011351 132 -EKGIEMIYQDPVTSIDIEKQTLITNS---GK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL- 204 (488)
Q Consensus 132 -~~~i~~~~~~~v~~id~~~~~v~~~~---g~--~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~- 204 (488)
+.+++++++++|++++++.+.+++.+ |+ ++.||+||||||+.+. .|+++|.+.++++++++..+.+.+.+.+
T Consensus 69 ~~~~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~-~p~ipG~~~~~v~~~~~~~~~~~l~~~~~ 147 (565)
T 3ntd_A 69 ARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPI-VPPIPGVDNPLTHSLRNIPDMDRILQTIQ 147 (565)
T ss_dssp HHHCCEEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCCCTTCCSTTEECCSSHHHHHHHHHHHH
T ss_pred HhcCcEEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCC-CCCCCCCCCCCEEEeCCHHHHHHHHHHHh
Confidence 58999999999999999998887753 44 6899999999999886 4667787778888888888887776544
Q ss_pred -hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeC-----
Q 011351 205 -EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG----- 278 (488)
Q Consensus 205 -~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~----- 278 (488)
..+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.+++++.+
T Consensus 148 ~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~ 226 (565)
T 3ntd_A 148 MNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMT-PVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHV 226 (565)
T ss_dssp HTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCT-TSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCC
T ss_pred hCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccch-hcCHHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccc
Confidence 3568999999999999999999999999999999999998 589999999999999999999999999999862
Q ss_pred -------------CCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceec
Q 011351 279 -------------SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVA 344 (488)
Q Consensus 279 -------------~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a 344 (488)
+++.+ .+.+.+|+++++|.||+|+|++|++++++.+|+..+ +|+|.||++++|+.|||||+|||+
T Consensus 227 ~~~~~~~~~~~~~~~~~~-~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~ 305 (565)
T 3ntd_A 227 ASDAAGEDTAHQHIKGHL-SLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPAIYAVGDAV 305 (565)
T ss_dssp CCGGGTCCCTTCCTTCEE-EEEETTSCEEEESEEEECSCEEECCHHHHHHTCCBCTTSSBCCCTTCBCSSTTEEECGGGB
T ss_pred cccccccccccccCCCcE-EEEEcCCCEEEcCEEEECcCCccchHHHHhCCcccCCCCCEEECCCcccCCCCEEEeeeeE
Confidence 23443 567789999999999999999999999998898875 688999999999999999999999
Q ss_pred ccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCC-CceeEeccccCCCCcceeeEEeeCCCCc---------E
Q 011351 345 AFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYL-PYFYSRVFEYEGSPRKVWWQFFGDNVGE---------T 414 (488)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~~~~-p~~~~~~~~~~g~~~~~~~~~~g~~~~~---------~ 414 (488)
..+....|......++..|..||+.+|+||++.. ..+... |++|+.+|+.. +..+|....+ .
T Consensus 306 ~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~~~~~~~~~~~-------~~~vG~~e~~a~~~g~~~~~ 377 (565)
T 3ntd_A 306 EEQDFVTGQACLVPLAGPANRQGRMAADNMFGRE-ERYQGTQGTAICKVFDLA-------VGATGKNEKQLKQAGIAFEK 377 (565)
T ss_dssp CEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCC-CCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHTTCCCEE
T ss_pred eeccccCCceeecccHHHHHHHHHHHHHHhcCCC-ccCCCcccceEEEEcCcE-------EEEecCCHHHHHHcCCCeEE
Confidence 8777666665556688899999999999999754 345544 45556677543 5566654321 1
Q ss_pred EEEcc-----C----CCcEEEEEE--ECCEEEEEEeecCCh-HH-hhHHHHHHhcCCCCC
Q 011351 415 IEIGN-----F----DPKIATFWI--DSGKLKGVLVESGSP-EE-FQLLPTLARSQPFVD 461 (488)
Q Consensus 415 ~~~~~-----~----~~~~~~~~~--~~~~~~g~~~~~~~~-~~-~~~~~~~~~~~~~~~ 461 (488)
..... . ...+.|+.+ ++++|+|+++++.++ .+ +..+..+|+.+.+++
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~k~v~~~~~~~ilG~~~~g~~a~~e~i~~~~~ai~~~~~~~ 437 (565)
T 3ntd_A 378 VYVHTASHASYYPGAEVVSFKLLFDPVKGTIFGAQAVGKDGIDKRIDVMAVAQRAGMTVE 437 (565)
T ss_dssp EEEEEESSCTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBHH
T ss_pred EEEecCcccCcCCCCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHH
Confidence 11110 1 124678887 469999999988776 55 445555678887765
No 19
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=100.00 E-value=1e-44 Score=380.98 Aligned_cols=408 Identities=19% Similarity=0.293 Sum_probs=297.8
Q ss_pred cCCCCcccceeccccccccccccccccccccCCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCC
Q 011351 17 WCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPAL 96 (488)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l 96 (488)
+..+||.++++....+.. ..+++++|+|||||+||++||.+|++.+. +.+|+|||+++..+|.++.+
T Consensus 14 ~~~~np~~g~e~~~~~~~------------~~~~~~~VvIIGgG~AGl~aA~~L~~~~~-g~~V~vie~~~~~~~~~~~l 80 (588)
T 3ics_A 14 SMTGGQQMGRTLYDDDDK------------DRWGSRKIVVVGGVAGGASVAARLRRLSE-EDEIIMVERGEYISFANCGL 80 (588)
T ss_dssp --------------------------------CCCCEEEEECCSHHHHHHHHHHHHHCS-SSEEEEECSSSCSSBCGGGH
T ss_pred ccccchhcCccccCcccC------------CcccCCCEEEECCcHHHHHHHHHHHhhCc-CCCEEEEECCCCccccCCCC
Confidence 558888888886322111 13456899999999999999999999843 45999999999988876554
Q ss_pred CccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeC---CCc--EEEeccEEeccC
Q 011351 97 TKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN---SGK--LLKYGSLIVATG 171 (488)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~---~g~--~i~yd~lVlAtG 171 (488)
+. ++.........+ .......+.++.+++++++++|+.++++.+.+.+. +|+ .+.||+||||||
T Consensus 81 p~-~~~g~~~~~~~~----------~~~~~~~~~~~~gi~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG 149 (588)
T 3ics_A 81 PY-YIGGVITERQKL----------LVQTVERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPG 149 (588)
T ss_dssp HH-HHTTSSCCGGGG----------BSSCHHHHHHHTTCEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCC
T ss_pred ch-hhcCcCCChHHh----------hccCHHHHHHhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCC
Confidence 42 111111111000 01233445568899999999999999999888774 455 689999999999
Q ss_pred CCCCcCCCCCCC-CCCcEEEecCHHHHHHHHHhh--hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccC
Q 011351 172 CTASRFPEKIGG-YLPGVHYIRDVADADALISSL--EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFT 248 (488)
Q Consensus 172 ~~~~~~~~~~g~-~~~gv~~~~~~~~~~~~~~~~--~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~ 248 (488)
+.+. .|.++|. +.+++++.++..+...+...+ ..+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++. ++
T Consensus 150 ~~p~-~p~i~G~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~ 227 (588)
T 3ics_A 150 AKPI-VPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP-ID 227 (588)
T ss_dssp EEEC-CCCCTTTTTCTTEEECSSHHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SC
T ss_pred CCCC-CCCCCCcccCCCeEEeCCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc-CC
Confidence 9876 4566776 677889999888887776654 36899999999999999999999999999999999999986 89
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeC
Q 011351 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVD 327 (488)
Q Consensus 249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd 327 (488)
+++.+.+.+.+++.||++++++.|++++.. ++ .+.+.+|+++++|.||+|+|++|++++++.+|+..+ +|+|.||
T Consensus 228 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~---~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~g~~~~~~g~i~vd 303 (588)
T 3ics_A 228 YEMAAYVHEHMKNHDVELVFEDGVDALEEN-GA---VVRLKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVN 303 (588)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEGG-GT---EEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBCGGGCBCCC
T ss_pred HHHHHHHHHHHHHcCCEEEECCeEEEEecC-CC---EEEECCCCEEEcCEEEEccCCCCChHHHHhcCceEcCCCCEEEC
Confidence 999999999999999999999999999853 22 477889999999999999999999999999999875 6889999
Q ss_pred CCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCC-CCCCceeEeccccCCCCcceeeEE
Q 011351 328 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY-DYLPYFYSRVFEYEGSPRKVWWQF 406 (488)
Q Consensus 328 ~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~~ 406 (488)
++++|+.|+|||+|||+..+....|.......+..|..||+.+|++|++.....+ ..+|..+...++.. +..
T Consensus 304 ~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~-------~a~ 376 (588)
T 3ics_A 304 EKFQTSDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIHGHTDSLYKGTLGTSVAKVFDLT-------VAT 376 (588)
T ss_dssp TTSBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCSSCCCCBCCCEEEEETTEE-------EEE
T ss_pred CccccCCCCEEEeeeeeecccccCCcccccccHHHHHHHHHHHHHHhcCCCccccCCcccceEEEECCeE-------EEE
Confidence 9999999999999999987765555544456788899999999999997222334 34555554444432 445
Q ss_pred eeCCCCc---------EEE---Ecc--C----CCcEEEEEEE--CCEEEEEEeecCC-hHHhh-HHHHHHhcCCCCC
Q 011351 407 FGDNVGE---------TIE---IGN--F----DPKIATFWID--SGKLKGVLVESGS-PEEFQ-LLPTLARSQPFVD 461 (488)
Q Consensus 407 ~g~~~~~---------~~~---~~~--~----~~~~~~~~~~--~~~~~g~~~~~~~-~~~~~-~~~~~~~~~~~~~ 461 (488)
+|....+ ... ... . ...+.|+.++ +++|+|+++++.+ +.++. .+..+|+.+.+++
T Consensus 377 vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~ilG~~~~g~~~~~e~i~~~~~ai~~~~t~~ 453 (588)
T 3ics_A 377 TGLNEKILKRLNIPYEVVHVQANSHAGYYPNATPVLIKLIFNKDSGKIYGAQTLGRDGVDKRMDVIATAIKANLTVL 453 (588)
T ss_dssp EECCHHHHHHTTCCCEEEEEEEESSCTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBTT
T ss_pred ecCCHHHHHHcCCCeEEEEEecCCccccCCCCceEEEEEEEECCCCeEEEEEEEcCCcHHHHHHHHHHHHHcCCCHH
Confidence 5543210 111 110 0 1247788774 6999999987654 55544 5555678888876
No 20
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=100.00 E-value=2.4e-42 Score=357.12 Aligned_cols=403 Identities=20% Similarity=0.257 Sum_probs=287.2
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC----CCCCCccccC--------------C-CCCCC
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE----RPALTKGYLF--------------P-LDKKP 108 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~----~~~l~~~~~~--------------~-~~~~~ 108 (488)
++.++||+|||||+||++||.+|++.|. +|+|||+++..... .+..++.++. . .....
T Consensus 40 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~---~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~ 116 (523)
T 1mo9_A 40 DPREYDAIFIGGGAAGRFGSAYLRAMGG---RQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMT 116 (523)
T ss_dssp CCSCBSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCT
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCC---CEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHH
Confidence 3456899999999999999999999987 89999998742110 0000000000 0 00000
Q ss_pred CCCCCcccccCCCCCCCCH---hHH-----HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCC
Q 011351 109 ARLPGFHTCVGSGGERQTP---EWY-----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEK 180 (488)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~---~~~-----~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~ 180 (488)
...+...... ........ .++ ++.++++++..++..++. +++.+. ++.+.||+||+|||+.+. .|++
T Consensus 117 ~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~~v~~~-g~~~~~d~lViATGs~p~-~p~i 191 (523)
T 1mo9_A 117 EKVVGIKEVV-DLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN--HTVEAA-GKVFKAKNLILAVGAGPG-TLDV 191 (523)
T ss_dssp TCCCCHHHHH-HHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET--TEEEET-TEEEEBSCEEECCCEECC-CCCS
T ss_pred hhhhhHHHHH-HHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC--CEEEEC-CEEEEeCEEEECCCCCCC-CCCC
Confidence 0000000000 00000012 455 678999985568888885 567776 778999999999999886 4556
Q ss_pred CCCCCCcEEEecCHHHHHHHH-HhhhcC-CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHH
Q 011351 181 IGGYLPGVHYIRDVADADALI-SSLEKA-KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQL 258 (488)
Q Consensus 181 ~g~~~~gv~~~~~~~~~~~~~-~~~~~~-~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~ 258 (488)
+|.+.+++++. +.+. ...... ++++|||+|.+|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.
T Consensus 192 ~G~~~~~v~~~------~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~l~~~ 264 (523)
T 1mo9_A 192 PGVNAKGVFDH------ATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI-KDNETRAYVLDR 264 (523)
T ss_dssp TTTTSBTEEEH------HHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC-CSHHHHHHHHHH
T ss_pred CCcccCcEeeH------HHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc-ccHHHHHHHHHH
Confidence 66555555542 2333 222334 99999999999999999999999999999999999985 799999999999
Q ss_pred HHHcCcEEEcCCeEEEEEeCCCCcE--EEEEeCCCc-EEEcCEEEEeecCccCCh-hhhhcCCccc-CCCEEeCCCCCCC
Q 011351 259 YQQNGVKFVKGASIKNLEAGSDGRV--AAVKLEDGS-TIDADTIVIGIGAKPTVS-PFERVGLNSS-VGGIQVDGQFRTR 333 (488)
Q Consensus 259 l~~~GV~v~~~~~v~~i~~~~~~~v--~~v~l~~g~-~i~~D~vi~a~G~~p~~~-~~~~~gl~~~-~g~i~vd~~~~t~ 333 (488)
+++.||+++++++|++++..+++++ ..|.+++|+ ++++|.||+|+|++|+++ +++++|+..+ +|+|.||+++||+
T Consensus 265 l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl~~~~~G~i~Vd~~~~t~ 344 (523)
T 1mo9_A 265 MKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVNEYLQTS 344 (523)
T ss_dssp HHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHHHHHHTCCBCTTSCBCCCTTSBCS
T ss_pred HHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccCHHHcCCccCCCCCEEECCCCccC
Confidence 9999999999999999986545543 357788887 899999999999999998 7999999875 6779999999999
Q ss_pred CCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC-CCCCCCceeEeccccCCCCcceeeEEeeCCCC
Q 011351 334 MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH-TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 412 (488)
Q Consensus 334 ~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~-~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~ 412 (488)
.|+|||+|||+..+. .+..|..||+.+|.||++.... .+..+|+++..... +..+|....
T Consensus 345 ~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~---------~a~vG~~e~ 405 (523)
T 1mo9_A 345 VPNVYAVGDLIGGPM----------EMFKARKSGCYAARNVMGEKISYTPKNYPDFLHTHYE---------VSFLGMGEE 405 (523)
T ss_dssp STTEEECGGGGCSSC----------SHHHHHHHHHHHHHHHTTCCCCCCCCSCCEEEESSSE---------EEEEECCHH
T ss_pred CCCEEEEeecCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCc---------eEEEeCCHH
Confidence 999999999997542 4556999999999999974322 25567875432111 334443321
Q ss_pred -------cEEE----Ec------------------------cCCCcEEEEEEE--CCEEEEEEeecCChHHh-hHHHHHH
Q 011351 413 -------ETIE----IG------------------------NFDPKIATFWID--SGKLKGVLVESGSPEEF-QLLPTLA 454 (488)
Q Consensus 413 -------~~~~----~~------------------------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~-~~~~~~~ 454 (488)
++.. .. .....+.|++++ +++|+|+++++..+.++ ..+..+|
T Consensus 406 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai 485 (523)
T 1mo9_A 406 EARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLI 485 (523)
T ss_dssp HHHHTTCCEEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHH
T ss_pred HHHhCCCCEEEEEEecccccccccccccccccccceEEeecCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHH
Confidence 1111 00 111357888875 69999999877776654 5566678
Q ss_pred hcCCCCC-h-hh--hcCCCcHHHHHHHHHccCCc
Q 011351 455 RSQPFVD-K-AK--LQQASSVEEALEIARAALPV 484 (488)
Q Consensus 455 ~~~~~~~-~-~~--~~~~~~~~~~~~~~~~~~~~ 484 (488)
+++.+++ . .. ++.|||++|++..+++.+-+
T Consensus 486 ~~~~t~~~l~~~~~~~~~Pt~~e~~~~~~~~~~~ 519 (523)
T 1mo9_A 486 KQGLTVDELGDMDELFLNPTHFIQLSRLRAGSKN 519 (523)
T ss_dssp HTTCBHHHHHTSCCCSSCSCCHHHHHHHHTTCSS
T ss_pred HCCCCHHHHHhCCcceECCCHHHHHHHHHHhhHh
Confidence 9998886 2 33 68899999999999887543
No 21
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=100.00 E-value=1.8e-42 Score=354.03 Aligned_cols=400 Identities=17% Similarity=0.220 Sum_probs=279.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC----CCCcccc-----------------CCC-CCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP----ALTKGYL-----------------FPL-DKKP 108 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~----~l~~~~~-----------------~~~-~~~~ 108 (488)
++||+|||||+||++||..|++.|. +|+|||+++....... .-++.++ ... ....
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~g~---~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 78 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQLGM---KTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVT 78 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCE
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCc
Confidence 5799999999999999999999987 8999999865321100 0000000 000 0000
Q ss_pred CCCCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCC--cEEEeccEEeccCCCCCcCCCCCCC
Q 011351 109 ARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGG 183 (488)
Q Consensus 109 ~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~i~yd~lVlAtG~~~~~~~~~~g~ 183 (488)
.++..+.... .........+++++.+++++.++ +..++....++.+.+| +.+.||+||+|||+.+.. |+.++.
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~-~~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~-p~~~g~ 156 (468)
T 2qae_A 79 MDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGE-GSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTE-LPFLPF 156 (468)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE-EEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECC-BTTBCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEeeCCEEEEEecCCceEEEEcCEEEECCCCCcCC-CCCCCC
Confidence 0000000000 00000001345567799999875 4457776666777777 679999999999998764 444554
Q ss_pred CCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHH-HHc
Q 011351 184 YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY-QQN 262 (488)
Q Consensus 184 ~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l-~~~ 262 (488)
+.+++.+ .+........+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+ ++.
T Consensus 157 ~~~~v~t------~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~~ 229 (468)
T 2qae_A 157 DEKVVLS------STGALALPRVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPT-LDEDVTNALVGALAKNE 229 (468)
T ss_dssp CSSSEEC------HHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHT
T ss_pred CcCceec------hHHHhhcccCCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccccc-CCHHHHHHHHHHHhhcC
Confidence 3334432 2233333346799999999999999999999999999999999999984 8999999999999 999
Q ss_pred CcEEEcCCeEEEEEeCCCCcEEEEEeC--CC--cEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCC
Q 011351 263 GVKFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMP 335 (488)
Q Consensus 263 GV~v~~~~~v~~i~~~~~~~v~~v~l~--~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~ 335 (488)
||+++++++|++++.++++ + .+.+. +| +++++|.||+|+|++|++++ ++++|+..+ +|+|.||+++||+.|
T Consensus 230 gv~i~~~~~v~~i~~~~~~-~-~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~ 307 (468)
T 2qae_A 230 KMKFMTSTKVVGGTNNGDS-V-SLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSIP 307 (468)
T ss_dssp CCEEECSCEEEEEEECSSS-E-EEEEECC---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTSBCSST
T ss_pred CcEEEeCCEEEEEEEcCCe-E-EEEEEcCCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCcccCCC
Confidence 9999999999999865333 3 45554 66 67999999999999999987 788898876 577999999999999
Q ss_pred CEEEEceecc-cCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeEeccccCCCCcceeeEEeeCCCC
Q 011351 336 GIFAIGDVAA-FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 412 (488)
Q Consensus 336 ~Ifa~GD~a~-~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~ 412 (488)
||||+|||+. .+. .+..|..||+.+|.+|++.. .+ +..+|+ ...++.+ +..+|....
T Consensus 308 ~IyA~GD~~~~~~~----------~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~--~~~~~~~-------~a~vG~~e~ 367 (468)
T 2qae_A 308 DVYAIGDVVDKGPM----------LAHKAEDEGVACAEILAGKP-GHVNYGVIPA--VIYTMPE-------VASVGKSED 367 (468)
T ss_dssp TEEECGGGBSSSCS----------CHHHHHHHHHHHHHHHTTCC-CCCCTTSCCE--EECSSSE-------EEEEECCHH
T ss_pred CEEEeeccCCCCCc----------cHhHHHHHHHHHHHHHcCCC-ccCCCCCCCE--EEECCCc-------eEEEeCCHH
Confidence 9999999998 332 45679999999999999743 33 344554 3323221 444554321
Q ss_pred -------cEEE--E----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhh-HHHHHHhcCCCCCh--hhhcCC
Q 011351 413 -------ETIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVDK--AKLQQA 468 (488)
Q Consensus 413 -------~~~~--~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~ 468 (488)
++.. . ......|.+++++ +|+|+|+++++..+.++. .+..+|+++.+++. ..++.|
T Consensus 368 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~ 447 (468)
T 2qae_A 368 ELKKEGVAYKVGKFPFNANSRAKAVSTEDGFVKVLVDKATDRILGVHIVCTTAGELIGEACLAMEYGASSEDVGRTCHAH 447 (468)
T ss_dssp HHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCS
T ss_pred HHHhcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCC
Confidence 1111 0 0112468888886 699999998777766644 55667888888762 335889
Q ss_pred CcHHHHHHHHHccCCc
Q 011351 469 SSVEEALEIARAALPV 484 (488)
Q Consensus 469 ~~~~~~~~~~~~~~~~ 484 (488)
|+++|++..+++++..
T Consensus 448 Pt~~e~~~~~~~~~~~ 463 (468)
T 2qae_A 448 PTMSEALKEACMALFA 463 (468)
T ss_dssp SCTHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999876544
No 22
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=100.00 E-value=1.8e-42 Score=354.63 Aligned_cols=402 Identities=17% Similarity=0.233 Sum_probs=280.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC----CCCcccc----------------CCC--CCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP----ALTKGYL----------------FPL--DKK 107 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~----~l~~~~~----------------~~~--~~~ 107 (488)
+++||+|||||+||++||..|++.|. +|+|||+++....... .-++.++ +.. ...
T Consensus 5 ~~~dvvIIGgG~aGl~aA~~l~~~g~---~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~ 81 (474)
T 1zmd_A 5 IDADVTVIGSGPGGYVAAIKAAQLGF---KTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEV 81 (474)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCE
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCC
Confidence 45799999999999999999999987 8999999864321000 0000000 000 000
Q ss_pred CCCCCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCC-C-cEEEeccEEeccCCCCCcCCCCCC
Q 011351 108 PARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS-G-KLLKYGSLIVATGCTASRFPEKIG 182 (488)
Q Consensus 108 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~-g-~~i~yd~lVlAtG~~~~~~~~~~g 182 (488)
..++..+.... .........+++++.+++++.+ .+..++.....|.+.+ + +++.||+||+|||+.|.. |+.++
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~-p~i~g 159 (474)
T 1zmd_A 82 RLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNG-YGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTP-FPGIT 159 (474)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-EEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECC-CTTCC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCC-CCCCC
Confidence 00000000000 0000000134566789999987 4556776555666666 4 579999999999998864 44555
Q ss_pred CCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHc
Q 011351 183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 262 (488)
Q Consensus 183 ~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~ 262 (488)
.+..++.+ .+........+++++|||+|.+|+|+|..|.+.|.+|+++++.++++++.+++++.+.+.+.+++.
T Consensus 160 ~~~~~v~t------~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~ 233 (474)
T 1zmd_A 160 IDEDTIVS------STGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQ 233 (474)
T ss_dssp CCSSSEEC------HHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHHHHT
T ss_pred CCcCcEEc------HHHHhhccccCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHHHHC
Confidence 43333332 222222223578999999999999999999999999999999999998568999999999999999
Q ss_pred CcEEEcCCeEEEEEeCCCCcEEEEE-----eCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCC
Q 011351 263 GVKFVKGASIKNLEAGSDGRVAAVK-----LEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRM 334 (488)
Q Consensus 263 GV~v~~~~~v~~i~~~~~~~v~~v~-----l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~ 334 (488)
||+++++++|++++.++++.+ .+. ..+++++++|.||+|+|++|++++ ++++|++.+ +|+|.||+++||+.
T Consensus 234 Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~ 312 (474)
T 1zmd_A 234 GFKFKLNTKVTGATKKSDGKI-DVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKI 312 (474)
T ss_dssp TCEEECSEEEEEEEECTTSCE-EEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTTCBCSS
T ss_pred CCEEEeCceEEEEEEcCCceE-EEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcCCccCC
Confidence 999999999999986543323 344 356778999999999999999987 788888876 57799999999999
Q ss_pred CCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeEeccccCCCCcceeeEEeeCCCC-
Q 011351 335 PGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG- 412 (488)
Q Consensus 335 ~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~- 412 (488)
|+|||+|||+..+. .+..|..||+.+|.||++... ..|..+|+++ .++.. +..+|....
T Consensus 313 ~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~--~~~~~-------~a~vG~~e~~ 373 (474)
T 1zmd_A 313 PNIYAIGDVVAGPM----------LAHKAEDEGIICVEGMAGGAVHIDYNCVPSVI--YTHPE-------VAWVGKSEEQ 373 (474)
T ss_dssp TTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHTTCCCCCCGGGCCEEE--CSSSE-------EEEEECCHHH
T ss_pred CCEEEeeecCCCCc----------cHHHHHHHHHHHHHHhcCCCCcCCCCCCCEEE--ECCCC-------eEEEeCCHHH
Confidence 99999999997542 455799999999999997432 2345567643 22211 444554322
Q ss_pred ------cEEE--E----------ccCCCcEEEEEEE--CCEEEEEEeecCChHH-hhHHHHHHhcCCCCC-h-hhhcCCC
Q 011351 413 ------ETIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEE-FQLLPTLARSQPFVD-K-AKLQQAS 469 (488)
Q Consensus 413 ------~~~~--~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~-~-~~~~~~~ 469 (488)
++.. . ......|.+++++ +|+|+|+++++..+.+ +..+..+|+++.+++ . ..++.||
T Consensus 374 a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~P 453 (474)
T 1zmd_A 374 LKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHP 453 (474)
T ss_dssp HHHHTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHHSCCCTT
T ss_pred HHhcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCC
Confidence 1111 0 0112468888887 6999999987777655 456677789888886 2 3458899
Q ss_pred cHHHHHHHHHccC
Q 011351 470 SVEEALEIARAAL 482 (488)
Q Consensus 470 ~~~~~~~~~~~~~ 482 (488)
+++|++..++.++
T Consensus 454 t~~e~~~~~~~~~ 466 (474)
T 1zmd_A 454 TLSEAFREANLAA 466 (474)
T ss_dssp CTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998654
No 23
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=100.00 E-value=1.6e-42 Score=356.89 Aligned_cols=400 Identities=19% Similarity=0.213 Sum_probs=283.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHc---CCCCCcEEEEcCCCCCCCC---C-CCCCcccc---------CCC---------C
Q 011351 51 NREFVIVGGGNAAGYAARTFVEH---GMADGRLCIVSKEAYAPYE---R-PALTKGYL---------FPL---------D 105 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~---g~~~~~V~lie~~~~~~~~---~-~~l~~~~~---------~~~---------~ 105 (488)
++||+|||||+||++||.+|++. |. +|+|||+++ .... . ..-++.++ ... .
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~---~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~ 77 (499)
T 1xdi_A 2 VTRIVILGGGPAGYEAALVAATSHPETT---QVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFD 77 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCTTTE---EEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC----
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCcC---EEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccC
Confidence 47999999999999999999998 76 899999986 2110 0 00000000 000 0
Q ss_pred CCCCCCCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeC------CCcEEEeCCCc--EEEeccEEeccCCCC
Q 011351 106 KKPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDI------EKQTLITNSGK--LLKYGSLIVATGCTA 174 (488)
Q Consensus 106 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~------~~~~v~~~~g~--~i~yd~lVlAtG~~~ 174 (488)
....++..+.... .........+++++.+++++.+ .+..+++ ....|.+.+|+ .+.||+||+|||+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p 156 (499)
T 1xdi_A 78 DAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAG-RGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASP 156 (499)
T ss_dssp --CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-EEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEE
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCC
Confidence 0000000000000 0000001235567789999987 5777877 22345556676 799999999999988
Q ss_pred CcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHH
Q 011351 175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 254 (488)
Q Consensus 175 ~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~ 254 (488)
.. |++++.+..++.+..+.. +....+++++|||+|.+|+|+|..+.+.|.+|+++++.+++++. +++++.+.
T Consensus 157 ~~-p~i~g~~~~~v~~~~~~~------~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~ 228 (499)
T 1xdi_A 157 RI-LPSAQPDGERILTWRQLY------DLDALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY-EDADAALV 228 (499)
T ss_dssp CC-CGGGCCCSSSEEEGGGGG------GCSSCCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC-SSHHHHHH
T ss_pred CC-CCCCCCCcCcEEehhHhh------hhhccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHH
Confidence 63 555665555555543222 22235789999999999999999999999999999999999986 89999999
Q ss_pred HHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCC
Q 011351 255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFR 331 (488)
Q Consensus 255 ~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~ 331 (488)
+.+.+++.||+++++++|++++.++ +.+ .+.+.+|+++++|.||+|+|++|++++ ++++|+..+ +|+|.||+++|
T Consensus 229 l~~~l~~~GV~i~~~~~V~~i~~~~-~~v-~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~~~ 306 (499)
T 1xdi_A 229 LEESFAERGVRLFKNARAASVTRTG-AGV-LVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSR 306 (499)
T ss_dssp HHHHHHHTTCEEETTCCEEEEEECS-SSE-EEEETTSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCSSSB
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEeC-CEE-EEEECCCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECCCcc
Confidence 9999999999999999999998643 334 577888989999999999999999988 788898876 47799999999
Q ss_pred CCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeEeccccCCCCcceeeEEeeC
Q 011351 332 TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGD 409 (488)
Q Consensus 332 t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g~ 409 (488)
|+.|+|||+|||+..+. .+..|..||+.+|.+|++.... .+..+|+++ .++. .+..+|.
T Consensus 307 t~~~~IyA~GD~~~~~~----------l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~--~~~~-------~~a~vG~ 367 (499)
T 1xdi_A 307 TLATGIYAAGDCTGLLP----------LASVAAMQGRIAMYHALGEGVSPIRLRTVAATV--FTRP-------EIAAVGV 367 (499)
T ss_dssp CSSTTEEECSGGGTSCS----------CHHHHHHHHHHHHHHHTTCCCCCCCGGGCEEEE--CSSS-------EEEEEES
T ss_pred cCCCCEEEEeccCCCcc----------cHHHHHHHHHHHHHHhcCCCCccCCCCCCcEEE--EecC-------CceEeCC
Confidence 99999999999998542 4556999999999999975222 344566532 2222 1455665
Q ss_pred CCC-------cEEE--E----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHh-hHHHHHHhcCCCCCh--hhh
Q 011351 410 NVG-------ETIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEEF-QLLPTLARSQPFVDK--AKL 465 (488)
Q Consensus 410 ~~~-------~~~~--~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~ 465 (488)
... ++.. . ......|.+++++ +|+|+|+++++..+.++ ..+..+|+++.+++. ..+
T Consensus 368 ~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~ 447 (499)
T 1xdi_A 368 PQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTL 447 (499)
T ss_dssp CHHHHHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSB
T ss_pred CHHHHHhCCCCEEEEEEecCcccceeecCCCceEEEEEEECCCCEEEEEEEECCchHHHHHHHHHHHHCCCCHHHHhccc
Confidence 432 1111 0 0112458888887 59999999877777664 455667888888862 336
Q ss_pred cCCCcHHHHHHHHHccCCc
Q 011351 466 QQASSVEEALEIARAALPV 484 (488)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~ 484 (488)
..||+++|++..+++++..
T Consensus 448 ~~~Pt~~e~~~~~~~~~~~ 466 (499)
T 1xdi_A 448 AVYPSLSGSITEAARRLMA 466 (499)
T ss_dssp CCSSSTHHHHHHHHHHHCC
T ss_pred ccCCCchHHHHHHHHHHhc
Confidence 8889999999999876543
No 24
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-42 Score=351.98 Aligned_cols=396 Identities=19% Similarity=0.225 Sum_probs=275.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC----CC-cc---------ccCCCCCCCCCC----
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA----LT-KG---------YLFPLDKKPARL---- 111 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~----l~-~~---------~~~~~~~~~~~~---- 111 (488)
+++||+|||||+||++||..|++.|. +|+|||++.. ... .. .+ +. .+..........
T Consensus 10 ~~~dVvVIGgG~aGl~aA~~l~~~g~---~V~liE~~~~-GG~-~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~ 84 (479)
T 2hqm_A 10 KHYDYLVIGGGSGGVASARRAASYGA---KTLLVEAKAL-GGT-CVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPL 84 (479)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTSC---CEEEEESSCT-THH-HHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCC
T ss_pred ccCCEEEEcCCHHHHHHHHHHHHCCC---cEEEEeCCCc-CCc-CcccCcHHHHHHHHHHHHHHHHHhHHhcCccccccc
Confidence 45899999999999999999999887 8999999742 100 00 00 00 000000000000
Q ss_pred ----CCccc--ccC------CCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCc--EEEeccEEeccCCCCCcC
Q 011351 112 ----PGFHT--CVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRF 177 (488)
Q Consensus 112 ----~~~~~--~~~------~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~--~i~yd~lVlAtG~~~~~~ 177 (488)
..+.. ... ..........+++.+++++.+ .+..+++....+.+.+|+ ++.||+||||||+.|..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~- 162 (479)
T 2hqm_A 85 DKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFG-WARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIF- 162 (479)
T ss_dssp SGGGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEE-EEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEECC-
T ss_pred ccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCC-
Confidence 00000 000 000000123345679999886 577777666667777776 79999999999998764
Q ss_pred C-CCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHH
Q 011351 178 P-EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 256 (488)
Q Consensus 178 ~-~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~ 256 (488)
| +++|.+ . .. +++.+......+++++|||+|.+|+|+|..|.++|.+|+++++.+++++. +++++.+.+.
T Consensus 163 p~~i~g~~--~---~~---~~~~~~~l~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~ 233 (479)
T 2hqm_A 163 PENIPGFE--L---GT---DSDGFFRLEEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRK-FDECIQNTIT 233 (479)
T ss_dssp CTTSTTGG--G---SB---CHHHHHHCSSCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHH
T ss_pred CCCCCCcc--c---cc---chHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccc-cCHHHHHHHH
Confidence 4 444421 1 11 23344444456899999999999999999999999999999999999974 8999999999
Q ss_pred HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC-cEEEcCEEEEeecCccCChh-hhhcCCccc-CCCEEeCCCCCCC
Q 011351 257 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPTVSP-FERVGLNSS-VGGIQVDGQFRTR 333 (488)
Q Consensus 257 ~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g-~~i~~D~vi~a~G~~p~~~~-~~~~gl~~~-~g~i~vd~~~~t~ 333 (488)
+.+++.||+++++++|++++..+++.+..+.+++| +++++|.||+|+|++|++.+ ++.+|++.+ +|+|.||++++|+
T Consensus 234 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~l~l~~~gl~~~~~G~i~vd~~~~t~ 313 (479)
T 2hqm_A 234 DHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQNTN 313 (479)
T ss_dssp HHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECCCSSGGGGTCCBCTTSCBCCCTTCBCS
T ss_pred HHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCccccChhhcCceECCCCCEeECCCCccC
Confidence 99999999999999999998654443446888899 78999999999999999877 788899876 6789999999999
Q ss_pred CCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCC---C--CCCCCCCceeEeccccCCCCcceeeEEee
Q 011351 334 MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ---T--HTYDYLPYFYSRVFEYEGSPRKVWWQFFG 408 (488)
Q Consensus 334 ~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~---~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~g 408 (488)
.|+|||+|||+..+. .+..|..||+.+|.||++.. . ..|..+|+. .|..+- +..+|
T Consensus 314 ~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~p~~---~~~~~~------~~~vG 374 (479)
T 2hqm_A 314 VPNIYSLGDVVGKVE----------LTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPSV---IFSHPE------AGSIG 374 (479)
T ss_dssp STTEEECGGGTTSSC----------CHHHHHHHHHHHHHHHHSCGGGTTCCCCCTTCCEE---ECCSSC------EEEEE
T ss_pred CCCEEEEEecCCCcc----------cHHHHHHHHHHHHHHhcCCCccCcccCCCCCCCeE---EECCCC------eEEEe
Confidence 999999999986432 56679999999999999743 2 234456642 222110 33344
Q ss_pred CCCCc---------EEEE------------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-
Q 011351 409 DNVGE---------TIEI------------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K- 462 (488)
Q Consensus 409 ~~~~~---------~~~~------------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~- 462 (488)
....+ +... ......+.|++++ +++|+|+++++.++.++... ..+|+.+.+++ .
T Consensus 375 l~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~ 454 (479)
T 2hqm_A 375 ISEKEAIEKYGKENIKVYNSKFTAMYYAMLSEKSPTRYKIVCAGPNEKVVGLHIVGDSSAEILQGFGVAIKMGATKADFD 454 (479)
T ss_dssp CCHHHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHH
T ss_pred CCHHHHHhcCCCCcEEEEEEeccHHHHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence 32110 1110 1112457788775 59999999977777776655 44578888776 2
Q ss_pred hhhcCCCcHHHHHHHHHc
Q 011351 463 AKLQQASSVEEALEIARA 480 (488)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~ 480 (488)
..++.|||++|++..++.
T Consensus 455 ~~~~~hPt~~e~~~~~~~ 472 (479)
T 2hqm_A 455 NCVAIHPTSAEELVTMRG 472 (479)
T ss_dssp TSCCCSSCSGGGGGSCC-
T ss_pred hCcCCCCChHHHHHHHHH
Confidence 336889999999876653
No 25
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=100.00 E-value=4.3e-42 Score=351.15 Aligned_cols=397 Identities=17% Similarity=0.212 Sum_probs=280.2
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---------------------CCCCCccc-cCCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---------------------RPALTKGY-LFPLDKK 107 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---------------------~~~l~~~~-~~~~~~~ 107 (488)
.++||+|||||+||+++|.+|++.|. +|+|||++.. ... .+..+. + -......
T Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~---~V~lie~~~~-GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~-~~g~~~~~~ 77 (467)
T 1zk7_A 3 PPVQVAVIGSGGAAMAAALKAVEQGA---QVTLIERGTI-GGTCVNVGCVPSKIMIRAAHIAHLRRESPF-DGGIAATVP 77 (467)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSST-THHHHHHSHHHHHHHHHHHHHHHHHHCCTT-TTTSCCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCCC-CccccCCCccchHHHHHHHHHHHHHhhhhh-cCCccCCCC
Confidence 46899999999999999999999987 8999999831 100 000000 0 0000000
Q ss_pred CCCCCCcccccC---CCCC-CCCHhHHHHC-CCeEEeCCcEEEEeCCCcEEEeCCC--cEEEeccEEeccCCCCCcCCCC
Q 011351 108 PARLPGFHTCVG---SGGE-RQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEK 180 (488)
Q Consensus 108 ~~~~~~~~~~~~---~~~~-~~~~~~~~~~-~i~~~~~~~v~~id~~~~~v~~~~g--~~i~yd~lVlAtG~~~~~~~~~ 180 (488)
..++..+..... .... ....+++++. +++++.+ ++..++....++.+.+| +.+.||+||||||+.|. .|++
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~-~p~i 155 (467)
T 1zk7_A 78 TIDRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHG-EARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPA-VPPI 155 (467)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEE-EEEEEETTEEEEEETTSSEEEEECSEEEECCCEEEC-CCCC
T ss_pred ccCHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEE-EEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCC-CCCC
Confidence 000000000000 0000 0123445566 8999886 68888877667777788 67999999999999886 4555
Q ss_pred CCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHH
Q 011351 181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 260 (488)
Q Consensus 181 ~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~ 260 (488)
+|.+..++. + .+.+.+....+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++ +++++.+.+.+.++
T Consensus 156 ~G~~~~~~~---~---~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~~~l~ 227 (467)
T 1zk7_A 156 PGLKESPYW---T---STEALASDTIPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR--EDPAIGEAVTAAFR 227 (467)
T ss_dssp TTTTTSCCB---C---HHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT--SCHHHHHHHHHHHH
T ss_pred CCCCcCcee---c---HHHHhcccccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC--CCHHHHHHHHHHHH
Confidence 654332222 2 333444344689999999999999999999999999999999999987 79999999999999
Q ss_pred HcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCE
Q 011351 261 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGI 337 (488)
Q Consensus 261 ~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~I 337 (488)
+.||+++++++|++++.+ ++ ...+.++ +.++++|.||+|+|.+|++++ ++..+++.+ +|+|.||++++|+.|+|
T Consensus 228 ~~Gv~i~~~~~v~~i~~~-~~-~~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~i 304 (467)
T 1zk7_A 228 AEGIEVLEHTQASQVAHM-DG-EFVLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSNPNI 304 (467)
T ss_dssp HTTCEEETTCCEEEEEEE-TT-EEEEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTE
T ss_pred hCCCEEEcCCEEEEEEEe-CC-EEEEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCcccCCCCE
Confidence 999999999999999854 23 2356665 457999999999999999875 578888876 56799999999999999
Q ss_pred EEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeEeccccCCCCcceeeEEeeCCCC----
Q 011351 338 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG---- 412 (488)
Q Consensus 338 fa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~---- 412 (488)
||+|||+..+. .+..|..||+.+|.||++... ..+..+|++ ..++. .+..+|....
T Consensus 305 ya~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~--~~~~~-------~~a~vG~~~~~a~~ 365 (467)
T 1zk7_A 305 YAAGDCTDQPQ----------FVYVAAAAGTRAAINMTGGDAALDLTAMPAV--VFTDP-------QVATVGYSEAEAHH 365 (467)
T ss_dssp EECSTTBSSCC----------CHHHHHHHHHHHHHHHTTCCCCCCCTTCEEE--ECSSS-------EEEEEECCHHHHHH
T ss_pred EEEeccCCCcc----------cHHHHHHHHHHHHHHHcCCCcccCCCCCCEE--EecCC-------ceEEEecCHHHHHh
Confidence 99999998643 456799999999999997532 234445543 22221 1444554321
Q ss_pred ---cEEE--E----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhh-HHHHHHhcCCCCCh--hhhcCCCcHH
Q 011351 413 ---ETIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVDK--AKLQQASSVE 472 (488)
Q Consensus 413 ---~~~~--~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~ 472 (488)
++.. . ......+.+++++ +|+|+|+++++..+.+.. .+..+|+++.+++. ...+.|||++
T Consensus 366 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~ 445 (467)
T 1zk7_A 366 DGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSHRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMV 445 (467)
T ss_dssp TTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTSTT
T ss_pred cCCCeEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHH
Confidence 1111 0 0113468888886 699999998777766644 56777899988762 3358899999
Q ss_pred HHHHHHHccCC
Q 011351 473 EALEIARAALP 483 (488)
Q Consensus 473 ~~~~~~~~~~~ 483 (488)
|++..+++++.
T Consensus 446 e~~~~~~~~~~ 456 (467)
T 1zk7_A 446 EGLKLAAQTFN 456 (467)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHHHh
Confidence 99999987654
No 26
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=100.00 E-value=1.9e-42 Score=353.40 Aligned_cols=399 Identities=21% Similarity=0.246 Sum_probs=275.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CC-CCCccccCC-----C---CCCCCCCC-----C
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RP-ALTKGYLFP-----L---DKKPARLP-----G 113 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~~-~l~~~~~~~-----~---~~~~~~~~-----~ 113 (488)
++||+|||||+||+++|..|++.|. +|+|||++.. ... .. .-++.++.. . ......++ .
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~~G~---~V~liE~~~~-gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~ 78 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQLGL---STAIVEPKYW-GGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFD 78 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSCT-THHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEEC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCC-CCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccC
Confidence 4799999999999999999999987 8999999731 100 00 000000000 0 00000000 0
Q ss_pred cccccC------CCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCC--cEEEeccEEeccCCCCCcCCCCCCCCC
Q 011351 114 FHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYL 185 (488)
Q Consensus 114 ~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~i~yd~lVlAtG~~~~~~~~~~g~~~ 185 (488)
+..... ........+++++.+++++.++.+. ++....++.+.+| +++.||+||+|||+.+.. |+.++.+.
T Consensus 79 ~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~-id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~-~~~~g~~~ 156 (464)
T 2a8x_A 79 YGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTF-ADANTLLVDLNDGGTESVTFDNAIIATGSSTRL-VPGTSLSA 156 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEE-SSSSEEEEEETTSCCEEEEEEEEEECCCEEECC-CTTCCCBT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-ecCCeEEEEeCCCceEEEEcCEEEECCCCCCCC-CCCCCCCc
Confidence 000000 0000001345567899999875443 5544445666677 679999999999998864 44444322
Q ss_pred CcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcE
Q 011351 186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 265 (488)
Q Consensus 186 ~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~ 265 (488)
. + .+.. ........+++++|||+|.+|+|+|..|.++|.+|+++++.+++++ .+++++.+.+.+.+++.||+
T Consensus 157 ~-~---~~~~---~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gv~ 228 (464)
T 2a8x_A 157 N-V---VTYE---EQILSRELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP-NEDADVSKEIEKQFKKLGVT 228 (464)
T ss_dssp T-E---ECHH---HHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHTCE
T ss_pred e-E---EecH---HHhhccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHHcCCE
Confidence 1 2 2222 3333233579999999999999999999999999999999999998 48999999999999999999
Q ss_pred EEcCCeEEEEEeCCCCcEEEEEeC-CC--cEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEE
Q 011351 266 FVKGASIKNLEAGSDGRVAAVKLE-DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFA 339 (488)
Q Consensus 266 v~~~~~v~~i~~~~~~~v~~v~l~-~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa 339 (488)
+++++++++++.+++ .+ .+.+. +| +++++|.|++|+|++|++++ ++++|+..+ +|+|.||+++||+.|||||
T Consensus 229 i~~~~~v~~i~~~~~-~~-~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~IyA 306 (464)
T 2a8x_A 229 ILTATKVESIADGGS-QV-TVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYA 306 (464)
T ss_dssp EECSCEEEEEEECSS-CE-EEEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTTSBCSSTTEEE
T ss_pred EEeCcEEEEEEEcCC-eE-EEEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcCCccCCCCEEE
Confidence 999999999986433 33 45554 56 67999999999999999987 788898876 5779999999999999999
Q ss_pred EceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC---CCCCCceeEeccccCCCCcceeeEEeeCCCC----
Q 011351 340 IGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT---YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG---- 412 (488)
Q Consensus 340 ~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~---~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~---- 412 (488)
+|||+..+. .+..|..||+.+|.||++....+ |..+|++ ..++.. +..+|....
T Consensus 307 ~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~--~~~~~~-------~a~vG~~e~~a~~ 367 (464)
T 2a8x_A 307 IGDVNGLLQ----------LAHVAEAQGVVAAETIAGAETLTLGDHRMLPRA--TFCQPN-------VASFGLTEQQARN 367 (464)
T ss_dssp CGGGGCSSC----------SHHHHHHHHHHHHHHHHTCCCCCCCCGGGSCEE--ECSSSE-------EEEEECCHHHHHH
T ss_pred eECcCCCcc----------CHHHHHHHHHHHHHHhcCCCCcccCCCCCCCEE--EECCCC-------eEEEcCCHHHHHh
Confidence 999997532 45579999999999999733333 4455643 222211 344554321
Q ss_pred ---cEEE--E----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhh-HHHHHHhcCCCCCh--hhhcCCCcHH
Q 011351 413 ---ETIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVDK--AKLQQASSVE 472 (488)
Q Consensus 413 ---~~~~--~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~ 472 (488)
++.. . ......|.|++++ +++|+|+++++..+.++. .+..+|+++.+++. ..++.||+++
T Consensus 368 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~ 447 (464)
T 2a8x_A 368 EGYDVVVAKFPFTANAKAHGVGDPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTMS 447 (464)
T ss_dssp TTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEEETTGGGGHHHHHHHHHTTCBHHHHTTSCCCTTCTT
T ss_pred cCCCEEEEEEEcchhhhhhhcCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhhCccCCCChH
Confidence 1111 0 0113468888886 699999998777766544 55667888888762 3358889999
Q ss_pred HHHHHHHccCCc
Q 011351 473 EALEIARAALPV 484 (488)
Q Consensus 473 ~~~~~~~~~~~~ 484 (488)
|++..+++++..
T Consensus 448 e~~~~~~~~~~~ 459 (464)
T 2a8x_A 448 EALQECFHGLVG 459 (464)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhc
Confidence 999999876543
No 27
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=100.00 E-value=6.3e-43 Score=358.40 Aligned_cols=400 Identities=17% Similarity=0.229 Sum_probs=274.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC---CCC-Ccccc----------------CCCCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER---PAL-TKGYL----------------FPLDKKPA 109 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~---~~l-~~~~~----------------~~~~~~~~ 109 (488)
.++||+|||||+||+++|..|++.|. +|+|||+++...... ... ++.++ ........
T Consensus 5 ~~~dVvIIGaG~aGl~aA~~l~~~G~---~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~ 81 (482)
T 1ojt_A 5 AEYDVVVLGGGPGGYSAAFAAADEGL---KVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPEL 81 (482)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCcc
Confidence 35799999999999999999999987 899999975432100 000 00000 00000000
Q ss_pred CCCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCC------------cEEEeccEEeccCCCC
Q 011351 110 RLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG------------KLLKYGSLIVATGCTA 174 (488)
Q Consensus 110 ~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g------------~~i~yd~lVlAtG~~~ 174 (488)
++..+.... ..........++++.+++++.++.+. ++.....+.+.+| .++.||+||+|||+.+
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p 160 (482)
T 1ojt_A 82 DIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQF-LDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRV 160 (482)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEE-EETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEE-ccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCC
Confidence 000000000 00000001234567899999875443 5543334444455 5799999999999987
Q ss_pred CcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHH
Q 011351 175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 254 (488)
Q Consensus 175 ~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~ 254 (488)
..++.++. + ..+. + .+...+....+++++|||+|.+|+|+|..|.++|.+|+++++.+++++. +++++.+.
T Consensus 161 ~~~~~i~~-~-~~v~---~---~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~ 231 (482)
T 1ojt_A 161 TKLPFIPE-D-PRII---D---SSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-ADRDLVKV 231 (482)
T ss_dssp CCCSSCCC-C-TTEE---C---HHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHH
T ss_pred CCCCCCCc-c-CcEE---c---HHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-cCHHHHHH
Confidence 64432332 1 1232 2 2223232335799999999999999999999999999999999999985 89999999
Q ss_pred HHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC----CcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeC
Q 011351 255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED----GSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVD 327 (488)
Q Consensus 255 ~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~----g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd 327 (488)
+.+.+++.||++++++++++++.+++ . ..+.+.+ |+++++|.|++|+|++|++++ ++++|+..+ +|+|.||
T Consensus 232 l~~~l~~~gV~i~~~~~v~~i~~~~~-~-~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd 309 (482)
T 1ojt_A 232 WQKQNEYRFDNIMVNTKTVAVEPKED-G-VYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVD 309 (482)
T ss_dssp HHHHHGGGEEEEECSCEEEEEEEETT-E-EEEEEESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCCCCC
T ss_pred HHHHHHhcCCEEEECCEEEEEEEcCC-e-EEEEEeccCCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCEeeC
Confidence 99999999999999999999985432 2 3566666 778999999999999999987 688899876 4779999
Q ss_pred CCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeEeccccCCCCcceeeE
Q 011351 328 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQ 405 (488)
Q Consensus 328 ~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~ 405 (488)
+++||+.|||||+|||+..+. .+..|..||+.+|.||++.. .+ +..+|+ ...++.+ +.
T Consensus 310 ~~~~t~~~~IyA~GD~~~~~~----------l~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~--~~~~~~~-------~a 369 (482)
T 1ojt_A 310 KQMRTNVPHIYAIGDIVGQPM----------LAHKAVHEGHVAAENCAGHK-AYFDARVIPG--VAYTSPE-------VA 369 (482)
T ss_dssp TTSBCSSTTEEECGGGTCSSC----------CHHHHHHHHHHHHHHHTTCC-CCCCCCCCCE--EECSSSC-------EE
T ss_pred CCcccCCCCEEEEEcccCCCc----------cHHHHHHHHHHHHHHHcCCC-ccCCCCCCCE--EEEcCCC-------eE
Confidence 999999999999999998532 45679999999999999743 33 444554 2322221 44
Q ss_pred EeeCCCC-------cEEE--E----------ccCCCcEEEEEE--ECCEEEEEEeecCChHHhh-HHHHHHhcCCCCC-h
Q 011351 406 FFGDNVG-------ETIE--I----------GNFDPKIATFWI--DSGKLKGVLVESGSPEEFQ-LLPTLARSQPFVD-K 462 (488)
Q Consensus 406 ~~g~~~~-------~~~~--~----------~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~-~ 462 (488)
.+|.... ++.. . ......|.++++ ++|+|+|+++++..+.++. .+..+|+++.+++ .
T Consensus 370 ~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l 449 (482)
T 1ojt_A 370 WVGETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADI 449 (482)
T ss_dssp EEECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHH
T ss_pred EEeCCHHHHHhcCCCEEEEEEEcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHH
Confidence 4554321 1111 1 011245888888 4699999998777766655 4455688888876 2
Q ss_pred -hhhcCCCcHHHHHHHHHccCCc
Q 011351 463 -AKLQQASSVEEALEIARAALPV 484 (488)
Q Consensus 463 -~~~~~~~~~~~~~~~~~~~~~~ 484 (488)
..++.|||++|++..|++++..
T Consensus 450 ~~~~~~~Pt~~e~~~~a~~~~~~ 472 (482)
T 1ojt_A 450 GKTIHPHPTLGESIGMAAEVALG 472 (482)
T ss_dssp HTSCCCSSSSTTHHHHHHHHHHT
T ss_pred hcCccCCCCHHHHHHHHHHHHhc
Confidence 3368899999999999876543
No 28
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=100.00 E-value=9.1e-43 Score=357.29 Aligned_cols=404 Identities=19% Similarity=0.255 Sum_probs=276.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC----CCccccCCC-----CCCCCCCCCcccccC-
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA----LTKGYLFPL-----DKKPARLPGFHTCVG- 119 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~----l~~~~~~~~-----~~~~~~~~~~~~~~~- 119 (488)
+++||+|||||+||+++|..|++.|+ +|+|||+++........ -++.++... ........++.....
T Consensus 4 ~~~dVvIIGgG~aGl~aA~~l~~~G~---~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~ 80 (478)
T 1v59_A 4 KSHDVVIIGGGPAGYVAAIKAAQLGF---NTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDI 80 (478)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCE
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC
Confidence 35799999999999999999999987 89999996543210000 000000000 000000000000000
Q ss_pred -CCC--------------CCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCC--cE------EEeccEEeccCCCCCc
Q 011351 120 -SGG--------------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KL------LKYGSLIVATGCTASR 176 (488)
Q Consensus 120 -~~~--------------~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~------i~yd~lVlAtG~~~~~ 176 (488)
..+ .....+++++.+++++.++.+. .+....+|.+.+| +. +.||+||+|||+.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~~ 159 (478)
T 1v59_A 81 KINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSF-EDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTP 159 (478)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE-SSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEECC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-ccCCeEEEEecCCCcccccccceEEeCEEEECcCCCCCC
Confidence 000 0001235567899999876554 3333345555666 56 9999999999998743
Q ss_pred CCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHH
Q 011351 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 256 (488)
Q Consensus 177 ~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~ 256 (488)
+ ++....+ ..+.+..+ .......+++++|||+|.+|+|+|..|.++|.+|+++++.+++++ .+++++.+.+.
T Consensus 160 ~---~g~~~~~-~~v~~~~~---~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~ 231 (478)
T 1v59_A 160 F---PGIEIDE-EKIVSSTG---ALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA-SMDGEVAKATQ 231 (478)
T ss_dssp C---TTCCCCS-SSEECHHH---HTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS-SSCHHHHHHHH
T ss_pred C---CCCCCCC-ceEEcHHH---HHhhhccCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcccc-ccCHHHHHHHH
Confidence 3 3333333 11223233 222223579999999999999999999999999999999999998 58999999999
Q ss_pred HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-----CCcEEEcCEEEEeecCccCCh--hhhhcCCccc-CCCEEeCC
Q 011351 257 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----DGSTIDADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVDG 328 (488)
Q Consensus 257 ~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~-----~g~~i~~D~vi~a~G~~p~~~--~~~~~gl~~~-~g~i~vd~ 328 (488)
+.+++.||++++++++++++..+++....+.+. +++++++|.||+|+|++|+++ +++++|+..+ +|+|.||+
T Consensus 232 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~ 311 (478)
T 1v59_A 232 KFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDD 311 (478)
T ss_dssp HHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTCCBCTTSCBCCCT
T ss_pred HHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCceeCCCCCEeECc
Confidence 999999999999999999985212333356655 456899999999999999998 7888999876 67799999
Q ss_pred CCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeEeccccCCCCcceeeEEe
Q 011351 329 QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFF 407 (488)
Q Consensus 329 ~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~ 407 (488)
++||+.|+|||+|||+..+. .+..|..||+.+|++|++... ..|..+|++|....+ +..+
T Consensus 312 ~~~t~~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~---------~a~v 372 (478)
T 1v59_A 312 QFNSKFPHIKVVGDVTFGPM----------LAHKAEEEGIAAVEMLKTGHGHVNYNNIPSVMYSHPE---------VAWV 372 (478)
T ss_dssp TSBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHHHSCCCCCTTSCCEEECSSSE---------EEEE
T ss_pred CCccCCCCEEEeeccCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCEEEEcCCc---------EEEE
Confidence 99999999999999998542 455799999999999997432 346667876543222 3334
Q ss_pred eCCCC-------cEEE--E----------ccCCCcEEEEEEE--CCEEEEEEeecCChHH-hhHHHHHHhcCCCCC-hhh
Q 011351 408 GDNVG-------ETIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEE-FQLLPTLARSQPFVD-KAK 464 (488)
Q Consensus 408 g~~~~-------~~~~--~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~ 464 (488)
|.... ++.. . ......+.+++++ +|+|+|+++++..+.+ +..+..+|+++.+++ ...
T Consensus 373 G~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~ 452 (478)
T 1v59_A 373 GKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVAR 452 (478)
T ss_dssp ECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHT
T ss_pred ECCHHHHHHcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhh
Confidence 43321 1111 0 0112457777765 6999999987776655 556677889998885 333
Q ss_pred -hcCCCcHHHHHHHHHccCCc
Q 011351 465 -LQQASSVEEALEIARAALPV 484 (488)
Q Consensus 465 -~~~~~~~~~~~~~~~~~~~~ 484 (488)
.+.||+++|++..++.++..
T Consensus 453 ~~~~~Pt~~e~~~~~~~~~~~ 473 (478)
T 1v59_A 453 VCHAHPTLSEAFKEANMAAYD 473 (478)
T ss_dssp SCCCTTCTTHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHhc
Confidence 58889999999999876543
No 29
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=100.00 E-value=3.4e-42 Score=352.36 Aligned_cols=402 Identities=19% Similarity=0.285 Sum_probs=278.5
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC----CCcccc-----------------CCCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA----LTKGYL-----------------FPLDKK 107 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~----l~~~~~-----------------~~~~~~ 107 (488)
+.++||+|||||+||+++|..|++.|+ +|+|||+++........ .++.++ ......
T Consensus 4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~---~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~ 80 (470)
T 1dxl_A 4 SDENDVVIIGGGPGGYVAAIKAAQLGF---KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNV 80 (470)
T ss_dssp CCCCCEEEECCSHHHHHHHHHHHHHTC---CEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCE
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 346899999999999999999999987 89999998654211000 000000 000000
Q ss_pred CCCCCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCC--cEEEeccEEeccCCCCCcCCCCCC
Q 011351 108 PARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIG 182 (488)
Q Consensus 108 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~i~yd~lVlAtG~~~~~~~~~~g 182 (488)
..++..+.... .........+++++.+++++.++.+ .++.....+.+.+| +.+.||+||+|||+.+.. |+.++
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~-p~~~g 158 (470)
T 1dxl_A 81 EIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGK-FVSPSEISVDTIEGENTVVKGKHIIIATGSDVKS-LPGVT 158 (470)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEE-EEETTEEEECCSSSCCEEEECSEEEECCCEEECC-BTTBC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEE-EecCCEEEEEeCCCceEEEEcCEEEECCCCCCCC-CCCCC
Confidence 00000000000 0000000123556679999998654 47765555655667 679999999999998764 44455
Q ss_pred CCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHc
Q 011351 183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 262 (488)
Q Consensus 183 ~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~ 262 (488)
.+.+++.+ ..........+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++ .+++++.+.+.+.+++.
T Consensus 159 ~~~~~v~~------~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-~~~~~~~~~l~~~l~~~ 231 (470)
T 1dxl_A 159 IDEKKIVS------STGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP-TMDAEIRKQFQRSLEKQ 231 (470)
T ss_dssp CCSSSEEC------HHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHS
T ss_pred CCcccEEe------HHHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc-cccHHHHHHHHHHHHHc
Confidence 43334332 222222223579999999999999999999999999999999999998 48999999999999999
Q ss_pred CcEEEcCCeEEEEEeCCCCcEEEEEeC---CC--cEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCC
Q 011351 263 GVKFVKGASIKNLEAGSDGRVAAVKLE---DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRM 334 (488)
Q Consensus 263 GV~v~~~~~v~~i~~~~~~~v~~v~l~---~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~ 334 (488)
||++++++++++++.++++ + .+.+. +| +++++|.||+|+|++|++++ ++++|+..+ +|+|.||+++||+.
T Consensus 232 gv~i~~~~~v~~i~~~~~~-~-~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~ 309 (470)
T 1dxl_A 232 GMKFKLKTKVVGVDTSGDG-V-KLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNV 309 (470)
T ss_dssp SCCEECSEEEEEEECSSSS-E-EEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTTCBCSS
T ss_pred CCEEEeCCEEEEEEEcCCe-E-EEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcCCccCC
Confidence 9999999999999854333 3 45543 44 67999999999999999987 788888876 57799999999999
Q ss_pred CCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeEeccccCCCCcceeeEEeeCCCC
Q 011351 335 PGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 412 (488)
Q Consensus 335 ~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~ 412 (488)
|+|||+|||+..+. .+..|..||+.+|.+|++. ..+ |..+|+ ...++.. +..+|....
T Consensus 310 ~~Iya~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~-~~~~~~~~~p~--~~~~~~~-------~a~vG~~e~ 369 (470)
T 1dxl_A 310 SGVYAIGDVIPGPM----------LAHKAEEDGVACVEYLAGK-VGHVDYDKVPG--VVYTNPE-------VASVGKTEE 369 (470)
T ss_dssp TTEEECSTTSSSCC----------CHHHHHHHHHHHHHHHTTS-CCCCCTTSCCE--EECSSSE-------EEEEECCHH
T ss_pred CCEEEEeccCCCCc----------cHHHHHHHHHHHHHHHcCC-CcCCCCCCCCE--EEECCCc-------eEEEcCCHH
Confidence 99999999997532 4556999999999999974 333 344554 3333221 344554321
Q ss_pred -------cEEE--E----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhh-HHHHHHhcCCCCCh--hhhcCC
Q 011351 413 -------ETIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVDK--AKLQQA 468 (488)
Q Consensus 413 -------~~~~--~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~ 468 (488)
++.. . ......|.+++++ +|+|+|+++++..+.++. .+..+|+++.+++. ..++.|
T Consensus 370 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~ 449 (470)
T 1dxl_A 370 QVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAH 449 (470)
T ss_dssp HHHHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCS
T ss_pred HHHhcCCcEEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCC
Confidence 1111 0 0113468888886 699999999777766644 55667888888762 335888
Q ss_pred CcHHHHHHHHHccCCc
Q 011351 469 SSVEEALEIARAALPV 484 (488)
Q Consensus 469 ~~~~~~~~~~~~~~~~ 484 (488)
|+++|++..+++++..
T Consensus 450 Pt~~e~~~~~~~~~~~ 465 (470)
T 1dxl_A 450 PTMSEAIKEAAMATYD 465 (470)
T ss_dssp SCTTHHHHHHHHHHHS
T ss_pred CChHHHHHHHHHHHhc
Confidence 9999999999876544
No 30
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=100.00 E-value=3.5e-42 Score=350.59 Aligned_cols=396 Identities=21% Similarity=0.277 Sum_probs=274.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-Ccccc----------------CCCCCCCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TKGYL----------------FPLDKKPAR 110 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~~~l-~~~~~----------------~~~~~~~~~ 110 (488)
++||+|||||+||++||..|++.|. +|+|||++. .... .... ++.++ ........+
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~~g~---~V~lie~~~-~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 78 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLGQ---KVTIVEKGN-LGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTID 78 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEEC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCC---eEEEEECCC-CCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccC
Confidence 4799999999999999999999987 899999973 2100 0000 00000 000000000
Q ss_pred CCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCC-cEEEeccEEeccCCCCCcCCCCCCCCCC
Q 011351 111 LPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLP 186 (488)
Q Consensus 111 ~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g-~~i~yd~lVlAtG~~~~~~~~~~g~~~~ 186 (488)
+..+.... .........+++++.+++++.++.+ .++.....+.+.+| +++.||+||+|||+.+.. |+.++.+..
T Consensus 79 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~id~~~v~V~~~~G~~~i~~d~lViATGs~p~~-~~~~g~~~~ 156 (455)
T 1ebd_A 79 FAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAY-FVDANTVRVVNGDSAQTYTFKNAIIATGSRPIE-LPNFKFSNR 156 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEE-EEETTEEEEEETTEEEEEECSEEEECCCEEECC-BTTBCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-EccCCeEEEEeCCCcEEEEeCEEEEecCCCCCC-CCCCCccce
Confidence 00000000 0000000124556679999987544 47765556777777 679999999999998764 444443221
Q ss_pred cEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEE
Q 011351 187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 266 (488)
Q Consensus 187 gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v 266 (488)
+ .+.. ........+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.||++
T Consensus 157 -v---~~~~---~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~gv~i 228 (455)
T 1ebd_A 157 -I---LDST---GALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEV 228 (455)
T ss_dssp -E---ECHH---HHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTCEE
T ss_pred -E---ecHH---HHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc-cCHHHHHHHHHHHHHCCCEE
Confidence 2 2222 23332345799999999999999999999999999999999999884 79999999999999999999
Q ss_pred EcCCeEEEEEeCCCCcEEEEEeC---CCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEEE
Q 011351 267 VKGASIKNLEAGSDGRVAAVKLE---DGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAI 340 (488)
Q Consensus 267 ~~~~~v~~i~~~~~~~v~~v~l~---~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~ 340 (488)
+++++|++++.++ +.+ .+.+. +++++++|.||+|+|++|++++ ++++|+..+ +|+|.||+++||+.|+|||+
T Consensus 229 ~~~~~v~~i~~~~-~~~-~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~ 306 (455)
T 1ebd_A 229 VTNALAKGAEERE-DGV-TVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAI 306 (455)
T ss_dssp EESEEEEEEEEET-TEE-EEEEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBCSSTTEEEC
T ss_pred EeCCEEEEEEEeC-CeE-EEEEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCcccCCCCEEEE
Confidence 9999999998543 222 34443 4568999999999999999887 678888876 57799999999999999999
Q ss_pred ceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeEeccccCCCCcceeeEEeeCCCC------
Q 011351 341 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------ 412 (488)
Q Consensus 341 GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~------ 412 (488)
|||+..+. .+..|..||+.+|.+|++. ..+ +..+|+ ...++.. +..+|....
T Consensus 307 GD~~~~~~----------~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~--~~~~~~~-------~a~vG~~e~~a~~~g 366 (455)
T 1ebd_A 307 GDIVPGPA----------LAHKASYEGKVAAEAIAGH-PSAVDYVAIPA--VVFSDPE-------CASVGYFEQQAKDEG 366 (455)
T ss_dssp GGGSSSCC----------CHHHHHHHHHHHHHHHTSC-CCCCCCSCCCE--EECSSSC-------EEEEECCHHHHHTTT
T ss_pred eccCCCcc----------cHHHHHHHHHHHHHHHcCC-CccCCCCCCCE--EEECCCc-------eEEEeCCHHHHHhcC
Confidence 99997532 4556999999999999974 333 344554 3333221 334454321
Q ss_pred -cEEEE------------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhh-HHHHHHhcCCCCC--hhhhcCCCcHHHH
Q 011351 413 -ETIEI------------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVD--KAKLQQASSVEEA 474 (488)
Q Consensus 413 -~~~~~------------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~ 474 (488)
++... ......|.+++++ +++|+|+++++.++.++. .+..+|+++.+++ ...++.|||++|+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~ 446 (455)
T 1ebd_A 367 IDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEI 446 (455)
T ss_dssp CCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTSSTHH
T ss_pred CCEEEEEEEcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEeCCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHH
Confidence 11110 0113468888886 699999998777766644 5566688888886 2446889999999
Q ss_pred HHHHHccC
Q 011351 475 LEIARAAL 482 (488)
Q Consensus 475 ~~~~~~~~ 482 (488)
+..+++++
T Consensus 447 ~~~~~~~~ 454 (455)
T 1ebd_A 447 AMEAAEVA 454 (455)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998764
No 31
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=100.00 E-value=8.7e-42 Score=348.46 Aligned_cols=400 Identities=16% Similarity=0.166 Sum_probs=277.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---CC-Ccccc-----------CCCCCCCCCCCCcc
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---AL-TKGYL-----------FPLDKKPARLPGFH 115 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~---~l-~~~~~-----------~~~~~~~~~~~~~~ 115 (488)
++||+|||||+||++||..|++.|. +|+|||+++....... .. ++.++ ........++....
T Consensus 4 ~~DVvVIGgG~aGl~aA~~l~~~G~---~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
T 3l8k_A 4 KYDVVVIGAGGAGYHGAFRLAKAKY---NVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQ 80 (466)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC---CEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHhCCC---eEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHH
Confidence 5799999999999999999999987 8999997765321100 00 00000 00000000000000
Q ss_pred cccCC--CCC--CCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcE--EEeccEEeccCCCCCcCCCCCCCCCCcEE
Q 011351 116 TCVGS--GGE--RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKL--LKYGSLIVATGCTASRFPEKIGGYLPGVH 189 (488)
Q Consensus 116 ~~~~~--~~~--~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~--i~yd~lVlAtG~~~~~~~~~~g~~~~gv~ 189 (488)
..... ... .....++++.+++++.+ ++..+++....|.+.+|+. +.||+||||||+.|. .|+++|.+ +
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~--~-- 154 (466)
T 3l8k_A 81 DRKDYVQELRFKQHKRNMSQYETLTFYKG-YVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETA-KLRLPGVE--Y-- 154 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTEEEESE-EEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEEC-CCCCTTGG--G--
T ss_pred HHHHhheeccccchHHHHHHhCCCEEEEe-EEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCcc-CCCCCCcc--c--
Confidence 00000 000 01122334568998876 7888998877888888888 999999999999876 45545532 2
Q ss_pred EecCHHHHHHHH-HhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEc
Q 011351 190 YIRDVADADALI-SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK 268 (488)
Q Consensus 190 ~~~~~~~~~~~~-~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~ 268 (488)
+.+..+...+. .....+++++|||+|.+|+|+|..|.++|.+|+++++.+++++..+++++.+.+++.++ |++++
T Consensus 155 -~~t~~~~~~~~~~l~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~---v~i~~ 230 (466)
T 3l8k_A 155 -CLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILK---LNIKF 230 (466)
T ss_dssp -SBCHHHHHSTTCSCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHC---CCEEC
T ss_pred -eEeHHHHHHHHHHHhhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCE---EEEEE
Confidence 33333332111 22235789999999999999999999999999999999999986449999998888776 99999
Q ss_pred CCeEEEEEeCCCCcEEEEEeC--CCc--EEEcCEEEEeecCccCChh-hhhcCCcccCCCEEeCCCCCCCCCCEEEEcee
Q 011351 269 GASIKNLEAGSDGRVAAVKLE--DGS--TIDADTIVIGIGAKPTVSP-FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDV 343 (488)
Q Consensus 269 ~~~v~~i~~~~~~~v~~v~l~--~g~--~i~~D~vi~a~G~~p~~~~-~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~ 343 (488)
++++++++..+++.+ .+.++ +|+ ++++|.|++|+|++|++++ +++.|+..++++|.||+++||+.|||||+|||
T Consensus 231 ~~~v~~i~~~~~~~v-~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~gl~~~~~Gi~vd~~~~t~~~~Iya~GD~ 309 (466)
T 3l8k_A 231 NSPVTEVKKIKDDEY-EVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTGIVVDETMKTNIPNVFATGDA 309 (466)
T ss_dssp SCCEEEEEEEETTEE-EEEECCTTSCCEEEEESCEEECCCEEECCCTTTGGGTCCBCSSSBCCCTTCBCSSTTEEECGGG
T ss_pred CCEEEEEEEcCCCcE-EEEEEecCCceEEEEcCEEEECcCCCcccccchhhcCceeCCCCEeECCCccCCCCCEEEEEec
Confidence 999999986432444 46776 676 7999999999999999885 78889987643499999999999999999999
Q ss_pred cccCCccCCcccccccHHHHHHHHHHHHHHHhcC--CCC--CCCCCCceeEeccccCCCCcceeeEEeeCCCCc------
Q 011351 344 AAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA--QTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE------ 413 (488)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~--~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~------ 413 (488)
+..+. .+..|..||+.+|.||++. ... .+..+|+ ....+.. +..+|....+
T Consensus 310 ~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~--~~~~~~~-------~a~vG~te~~a~~~g~ 370 (466)
T 3l8k_A 310 NGLAP----------YYHAAVRMSIAAANNIMANGMPVDYVDVKSIPV--TIYTIPS-------LSYVGILPSKARKMGI 370 (466)
T ss_dssp TCSCC----------SHHHHHHHHHHHHHHHHTTTSCCCCCCSTTSCE--EECSSSC-------EEEEECCHHHHHHHTC
T ss_pred CCCCc----------cHhHHHHHHHHHHHHHhCCCCCccccCCCCCcE--EEECCCC-------eEEecCCHHHHHhCCC
Confidence 98632 5567999999999999975 332 3444554 2222221 4455544321
Q ss_pred -E--EEEc----------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHHHHH
Q 011351 414 -T--IEIG----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEAL 475 (488)
Q Consensus 414 -~--~~~~----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~ 475 (488)
. .... .....+.|+.++ +|+|+|+++++.++.++... ..+|+++.+++ . ..++.|||++|++
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~ 450 (466)
T 3l8k_A 371 EIVEAEYNMEEDVSAQIYGQKEGVLKLIFERGSMRLIGAWMIGVHSQYLINELGLAVAYGLNAKQLASFAEQHPSTNEII 450 (466)
T ss_dssp CEEEEEEEGGGSHHHHHHTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHCCCCTTSTTHHH
T ss_pred CEEEEEEEcccChhheecCCCeEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCcCCHHHHhccccCCCChHHHH
Confidence 1 1110 112457888776 49999999988887776544 55678888886 2 4468899999999
Q ss_pred HHHHccCC
Q 011351 476 EIARAALP 483 (488)
Q Consensus 476 ~~~~~~~~ 483 (488)
..+++++.
T Consensus 451 ~~~~~~~~ 458 (466)
T 3l8k_A 451 SYTARKVI 458 (466)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987653
No 32
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=100.00 E-value=4.9e-41 Score=342.60 Aligned_cols=395 Identities=20% Similarity=0.261 Sum_probs=274.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-Ccccc--------------CCC-CCCCCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TKGYL--------------FPL-DKKPARL 111 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~~~l-~~~~~--------------~~~-~~~~~~~ 111 (488)
++||+|||||+||++||..|++.|. +|+|||+++. ... .... ++.++ +.. .....++
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~~g~---~V~lie~~~~-GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 81 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQLGL---KVLAVEAGEV-GGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDL 81 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCT-THHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCCC-CCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCH
Confidence 5899999999999999999999987 8999999862 100 0000 00000 000 0000000
Q ss_pred CCcccccC---CCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcE
Q 011351 112 PGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGV 188 (488)
Q Consensus 112 ~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv 188 (488)
..+..... .........++++.+++++.++ +..++. +++.+. |+++.||+||||||+.|..++.+++. ..+
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~-~~~~~~--~~v~v~-g~~~~~d~lViATGs~p~~p~gi~~~--~~v 155 (464)
T 2eq6_A 82 KKLGGWRDQVVKKLTGGVGTLLKGNGVELLRGF-ARLVGP--KEVEVG-GERYGAKSLILATGSEPLELKGFPFG--EDV 155 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-EEEEET--TEEEET-TEEEEEEEEEECCCEEECCBTTBCCS--SSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeee-EEEccC--CEEEEc-cEEEEeCEEEEcCCCCCCCCCCCCCC--CcE
Confidence 00000000 0000001235567899999875 444553 677776 67899999999999988754323331 122
Q ss_pred EEecCHHHHHHHHHhhh-cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEE
Q 011351 189 HYIRDVADADALISSLE-KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267 (488)
Q Consensus 189 ~~~~~~~~~~~~~~~~~-~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~ 267 (488)
. + .+...+... .+++++|||+|.+|+|+|..|.++|.+|+++++.+++++ .+++++.+.+.+.+++.||+++
T Consensus 156 ~---~---~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gV~i~ 228 (464)
T 2eq6_A 156 W---D---STRALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP-QGDPETAALLRRALEKEGIRVR 228 (464)
T ss_dssp E---C---HHHHTCGGGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHTTCEEE
T ss_pred E---c---HHHHHhhhhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHhcCCEEE
Confidence 2 2 233333223 579999999999999999999999999999999999988 4799999999999999999999
Q ss_pred cCCeEEEEEeCCCCcEEEEEeC-C--Cc--EEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEE
Q 011351 268 KGASIKNLEAGSDGRVAAVKLE-D--GS--TIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFA 339 (488)
Q Consensus 268 ~~~~v~~i~~~~~~~v~~v~l~-~--g~--~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa 339 (488)
+++++++++.++ +.+ .+.+. + |+ ++++|.||+|+|++|++++ ++..|+..+ +|+|.||+++||+.|+|||
T Consensus 229 ~~~~v~~i~~~~-~~~-~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya 306 (464)
T 2eq6_A 229 TKTKAVGYEKKK-DGL-HVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARMETSVPGVYA 306 (464)
T ss_dssp CSEEEEEEEEET-TEE-EEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTTCBCSSTTEEE
T ss_pred cCCEEEEEEEeC-CEE-EEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCCcccCCCCEEE
Confidence 999999998643 333 46665 6 76 8999999999999999886 678888875 6779999999999999999
Q ss_pred EceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeEeccccCCCCcceeeEEeeCCCC------
Q 011351 340 IGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------ 412 (488)
Q Consensus 340 ~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~------ 412 (488)
+|||+..+. .+..|..||+.+|.+|++... ..+. +|++ ..++.. +..+|....
T Consensus 307 ~GD~~~~~~----------l~~~A~~~g~~aa~~i~g~~~~~~~~-~p~~--~~~~~~-------~a~vG~~e~~a~~~g 366 (464)
T 2eq6_A 307 IGDAARPPL----------LAHKAMREGLIAAENAAGKDSAFDYQ-VPSV--VYTSPE-------WAGVGLTEEEAKRAG 366 (464)
T ss_dssp CGGGTCSSC----------CHHHHHHHHHHHHHHHTTCCCCCCCC-CCEE--ECSSSE-------EEEEECCHHHHHHTT
T ss_pred EeccCCCcc----------cHHHHHHHHHHHHHHhcCCCcccCCC-CCeE--EECCCC-------EEEEeCCHHHHHhcC
Confidence 999997532 455699999999999997432 1344 6653 222211 344554321
Q ss_pred -cEEE--E----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHh-hHHHHHHhcCCCCCh--hhhcCCCcHHHH
Q 011351 413 -ETIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEEF-QLLPTLARSQPFVDK--AKLQQASSVEEA 474 (488)
Q Consensus 413 -~~~~--~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 474 (488)
++.. . ......+.+++++ +|+|+|+++++..+.++ ..+..+|+.+.+++. ..++.|||++|+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~ 446 (464)
T 2eq6_A 367 YKVKVGKFPLAASGRALTLGGAEGMVKVVGDEETDLLLGVFIVGPQAGELIAEAALALEMGATLTDLALTVHPHPTLSES 446 (464)
T ss_dssp CCEEEEEEEGGGCHHHHHTSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTTHH
T ss_pred CCEEEEEEEcCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHH
Confidence 1111 0 0112458888886 69999999987777665 455667888888862 446889999999
Q ss_pred HHHHHccCCc
Q 011351 475 LEIARAALPV 484 (488)
Q Consensus 475 ~~~~~~~~~~ 484 (488)
+..+++++..
T Consensus 447 ~~~~~~~~~~ 456 (464)
T 2eq6_A 447 LMEAAEAFHK 456 (464)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 9999876544
No 33
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=100.00 E-value=5.5e-42 Score=352.40 Aligned_cols=404 Identities=18% Similarity=0.264 Sum_probs=275.7
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC------CC----------------CCccccCCCC
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER------PA----------------LTKGYLFPLD 105 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~------~~----------------l~~~~~~~~~ 105 (488)
+++++||+|||||+||++||..|++.|. +|+|||+++...... |. +.. +-....
T Consensus 22 ~m~~~dVvVIGgG~aGl~aA~~la~~G~---~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~-~g~~~~ 97 (491)
T 3urh_A 22 SMMAYDLIVIGSGPGGYVCAIKAAQLGM---KVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEA-LGVEVA 97 (491)
T ss_dssp ----CCEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGG-GTEECC
T ss_pred hcccCCEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhh-cCcccC
Confidence 3456899999999999999999999987 899999876432100 00 000 000000
Q ss_pred CCCCCCCCcccc---cCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCC--cEEEeccEEeccCCCCCcCCCC
Q 011351 106 KKPARLPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEK 180 (488)
Q Consensus 106 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~i~yd~lVlAtG~~~~~~~~~ 180 (488)
....++...... ...........++++.+++++.+ .+..+++....+.+.+| .++.||+||||||+.+.. +
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~---i 173 (491)
T 3urh_A 98 NPKLNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQG-TGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVAG---I 173 (491)
T ss_dssp CCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-EEEECSSSEEEEECTTSCEEEEECSEEEECCCEECCC---B
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCCCC---C
Confidence 000000000000 00000001123456679999886 45556665556666677 579999999999987643 3
Q ss_pred CCCC--CCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHH
Q 011351 181 IGGY--LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQL 258 (488)
Q Consensus 181 ~g~~--~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~ 258 (488)
++.. ..+...+ +..........+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.
T Consensus 174 pg~~~~~~~~~~~----~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~ 248 (491)
T 3urh_A 174 PGVEVAFDEKTIV----SSTGALALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG-MDGEVAKQLQRM 248 (491)
T ss_dssp TTBCCCCCSSSEE----CHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS-SCHHHHHHHHHH
T ss_pred CCcccccCCeeEE----ehhHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc-CCHHHHHHHHHH
Confidence 3322 2222222 23333333456899999999999999999999999999999999999985 799999999999
Q ss_pred HHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC---C--cEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCC
Q 011351 259 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQF 330 (488)
Q Consensus 259 l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~---g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~ 330 (488)
+++.||++++++++++++..++ .+ .+.+.+ | +++++|.||+|+|++|++++ ++..++..+ +|+|.||+++
T Consensus 249 l~~~gV~v~~~~~v~~i~~~~~-~~-~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~ 326 (491)
T 3urh_A 249 LTKQGIDFKLGAKVTGAVKSGD-GA-KVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHF 326 (491)
T ss_dssp HHHTTCEEECSEEEEEEEEETT-EE-EEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTTC
T ss_pred HHhCCCEEEECCeEEEEEEeCC-EE-EEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCCC
Confidence 9999999999999999986533 22 355542 4 57999999999999999986 788888876 6779999999
Q ss_pred CCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC-CCCCCCceeEeccccCCCCcceeeEEeeC
Q 011351 331 RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH-TYDYLPYFYSRVFEYEGSPRKVWWQFFGD 409 (488)
Q Consensus 331 ~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~-~~~~~p~~~~~~~~~~g~~~~~~~~~~g~ 409 (488)
+|+.|+|||+|||+..+. .+..|..+|+.+|++|++.... .+..+|+ ...++.. +..+|.
T Consensus 327 ~t~~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~p~-------~a~vGl 387 (491)
T 3urh_A 327 QTSIAGVYAIGDVVRGPM----------LAHKAEDEGVAVAEIIAGQAGHVNYDVIPG--VVYTQPE-------VASVGK 387 (491)
T ss_dssp BCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHTTSCCCCCTTCCCE--EECSSSC-------EEEEEC
T ss_pred CCCCCCEEEEEecCCCcc----------chhHHHHHHHHHHHHHcCCCcccCCCCCCE--EEEccCC-------eEEEeC
Confidence 999999999999996542 5567999999999999974322 3444564 2322221 444554
Q ss_pred CCC-------cEE--EEc----------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhh
Q 011351 410 NVG-------ETI--EIG----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKL 465 (488)
Q Consensus 410 ~~~-------~~~--~~~----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~ 465 (488)
... ++. ... .....+.|+.++ +++|+|+++++.++.++... ..+|+++.+++ . ..+
T Consensus 388 te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~ 467 (491)
T 3urh_A 388 TEEELKAAGVAYKIGKFPFTANGRARAMLQTDGFVKILADKETDRVLGGHIIGFGAGEMIHEIAVLMEFGGSSEDLGRTC 467 (491)
T ss_dssp CHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSC
T ss_pred CHHHHHhCCCCEEEEEEecCcchhhhcCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCc
Confidence 321 111 100 012457788775 59999999988887776655 44578888876 3 335
Q ss_pred cCCCcHHHHHHHHHccCCcc
Q 011351 466 QQASSVEEALEIARAALPVE 485 (488)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~ 485 (488)
+.|||++|+++.|++++..+
T Consensus 468 ~~hPt~~e~~~~~~~~~~~~ 487 (491)
T 3urh_A 468 HAHPTMSEAVKEAALSTFFK 487 (491)
T ss_dssp CCSSCTTHHHHHHHHHHHC-
T ss_pred cCCCChHHHHHHHHHHhhhc
Confidence 88999999999998876543
No 34
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=100.00 E-value=2.8e-41 Score=343.06 Aligned_cols=390 Identities=18% Similarity=0.237 Sum_probs=270.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC------CC---------------CCccccCCCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER------PA---------------LTKGYLFPLDKKP 108 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~------~~---------------l~~~~~~~~~~~~ 108 (488)
+++||+|||||+||+++|..|++.|. +|+|||++.. .... |. ....+-.......
T Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~---~V~liE~~~~-GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~ 78 (450)
T 1ges_A 3 KHYDYIAIGGGSGGIASINRAAMYGQ---KCALIEAKEL-GGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINK 78 (450)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTTC---CEEEEESSCT-THHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEE
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCC---eEEEEcCCCC-CCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCc
Confidence 35799999999999999999999876 8999999742 1000 00 0000000000000
Q ss_pred CCCCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCC
Q 011351 109 ARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL 185 (488)
Q Consensus 109 ~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~ 185 (488)
.++..+.... ...........+++.+++++.+ ++..++. +++.+ +++++.||+||||||+.|. .|+++|.
T Consensus 79 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~i~~--~~v~~-~g~~~~~d~lviAtGs~p~-~p~i~g~-- 151 (450)
T 1ges_A 79 FNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKG-FARFVDA--KTLEV-NGETITADHILIATGGRPS-HPDIPGV-- 151 (450)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CCEEEET--TEEEE-TTEEEEEEEEEECCCEEEC-CCCSTTG--
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEecC--CEEEE-CCEEEEeCEEEECCCCCCC-CCCCCCc--
Confidence 0000000000 0000000112346679999987 4556764 56777 7778999999999999876 3544442
Q ss_pred CcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcE
Q 011351 186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 265 (488)
Q Consensus 186 ~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~ 265 (488)
+ ...+ .+.+......+++++|||+|.+|+|+|..|.++|.+|+++++.+++++ .+++++.+.+.+.+++.||+
T Consensus 152 ~---~~~~---~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~Gv~ 224 (450)
T 1ges_A 152 E---YGID---SDGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP-SFDPMISETLVEVMNAEGPQ 224 (450)
T ss_dssp G---GSBC---HHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHSCE
T ss_pred c---ceec---HHHhhhhhhcCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhh-hhhHHHHHHHHHHHHHCCCE
Confidence 1 1222 333333334679999999999999999999999999999999999887 48999999999999999999
Q ss_pred EEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEEEce
Q 011351 266 FVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGD 342 (488)
Q Consensus 266 v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD 342 (488)
+++++++++++.++++. ..+.+++|+++++|.||+|+|++|++++ ++++|++.+ +|+|.||++++|+.|||||+||
T Consensus 225 i~~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD 303 (450)
T 1ges_A 225 LHTNAIPKAVVKNTDGS-LTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGD 303 (450)
T ss_dssp EECSCCEEEEEECTTSC-EEEEETTSCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSG
T ss_pred EEeCCEEEEEEEeCCcE-EEEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCCccCCCCEEEEec
Confidence 99999999998654343 3678889989999999999999999873 688888876 6779999999999999999999
Q ss_pred ecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeEeccccCCCCcceeeEEeeCCCC-------
Q 011351 343 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------- 412 (488)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~------- 412 (488)
|+..+. .+..|..||+.+|.||++... ..|..+|+. .|..+ .+..+|....
T Consensus 304 ~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~---~~~~~------~~a~vG~~e~~a~~~~g 364 (450)
T 1ges_A 304 NTGAVE----------LTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTV---VFSHP------PIGTVGLTEPQAREQYG 364 (450)
T ss_dssp GGTSCC----------CHHHHHHHHHHHHHHHHTTCTTCCCCCSSCCEE---ECCSS------CEEEEECCHHHHHHHHC
T ss_pred cCCCCc----------cHHHHHHHHHHHHHHHcCCCCcccCCCCCCCeE---EECCC------ceEEEeCCHHHHHhcCC
Confidence 987432 566799999999999997432 235556653 22211 1334443211
Q ss_pred --cEEEE------------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHHHH-HHhcCCCCC-h-hhhcCCCcHHH
Q 011351 413 --ETIEI------------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVD-K-AKLQQASSVEE 473 (488)
Q Consensus 413 --~~~~~------------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~ 473 (488)
.+... ......+.++.++ +++|+|+++++.++.++...-. +++.+.+++ . ..++.|||++|
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 444 (450)
T 1ges_A 365 DDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAE 444 (450)
T ss_dssp GGGEEEEEEEEECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGG
T ss_pred CCcEEEEEEECchhhHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCChHH
Confidence 11110 1112347777775 6999999998777777665544 578888776 2 33688999999
Q ss_pred HHHH
Q 011351 474 ALEI 477 (488)
Q Consensus 474 ~~~~ 477 (488)
++..
T Consensus 445 ~~~~ 448 (450)
T 1ges_A 445 EFVT 448 (450)
T ss_dssp GGGS
T ss_pred HHHh
Confidence 8764
No 35
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=100.00 E-value=1.8e-41 Score=347.98 Aligned_cols=317 Identities=19% Similarity=0.281 Sum_probs=239.6
Q ss_pred HHHC-CCeEEeCCcEEEEeCCCcEEEeC---C-----CcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHH
Q 011351 130 YKEK-GIEMIYQDPVTSIDIEKQTLITN---S-----GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL 200 (488)
Q Consensus 130 ~~~~-~i~~~~~~~v~~id~~~~~v~~~---~-----g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~ 200 (488)
+++. +++++.+ .+..++. ++|.+. + ++.+.||+||||||+.|.. |+++|. +.+.+ ++.+
T Consensus 117 l~~~~gv~~~~g-~~~~i~~--~~v~v~~~~~~~~~~~~~~~~d~lViATGs~p~~-p~i~G~--~~~~~------~~~~ 184 (495)
T 2wpf_A 117 FNDTEGLDFFLG-WGSLESK--NVVVVRETADPKSAVKERLQADHILLATGSWPQM-PAIPGI--EHCIS------SNEA 184 (495)
T ss_dssp HHHCTTEEEEES-EEEEEET--TEEEEESSSSTTSCEEEEEEEEEEEECCCEEECC-CCCTTG--GGCEE------HHHH
T ss_pred HhcCCCeEEEEe-EEEEeeC--CEEEEeecCCccCCCCeEEEcCEEEEeCCCCcCC-CCCCCc--ccccc------HHHH
Confidence 4566 9999986 5666764 677775 4 6779999999999998863 444443 22222 3333
Q ss_pred HHhhhcCCeEEEECCCHHHHHHHHHHHhC---CCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351 201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (488)
Q Consensus 201 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~~---g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 277 (488)
......+++++|||+|.+|+|+|..|.++ |.+|+++++.+++++. +++++.+.+.+.+++.||+++++++|++++.
T Consensus 185 ~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~ 263 (495)
T 2wpf_A 185 FYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRG-FDETIREEVTKQLTANGIEIMTNENPAKVSL 263 (495)
T ss_dssp TTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTT-SCHHHHHHHHHHHHHTTCEEEESCCEEEEEE
T ss_pred HhhhhcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEE
Confidence 33334578999999999999999999999 9999999999999974 8999999999999999999999999999986
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcc
Q 011351 278 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT 354 (488)
Q Consensus 278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~ 354 (488)
++++. ..+.+.+|+++++|.||+|+|++|++++ ++++|+..+ +|+|.||+++||+.|||||+|||+..+
T Consensus 264 ~~~~~-~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~------- 335 (495)
T 2wpf_A 264 NTDGS-KHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRL------- 335 (495)
T ss_dssp CTTSC-EEEEETTSCEEEESEEEECSCEEECCGGGTGGGTTCCBCTTSSBCCCTTCBCSSTTEEECGGGGCSC-------
T ss_pred cCCce-EEEEECCCcEEEcCEEEECCCCcccccccchhhcCccCCCCCCEEECCCCccCCCCEEEEeccCCCc-------
Confidence 53333 3678889999999999999999999974 678898876 678999999999999999999999642
Q ss_pred cccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeEeccccCCCCcceeeEEeeCCCCc-------EEE-E-------
Q 011351 355 ARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIE-I------- 417 (488)
Q Consensus 355 ~~~~~~~~A~~~g~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~~~-~------- 417 (488)
..+..|..||+.+|.+|++... ..|..+|+ ...++.+ +..+|....+ +.. .
T Consensus 336 ---~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~~~-------~a~vGl~e~~a~~~~~~~~v~~~~~~~~~ 403 (495)
T 2wpf_A 336 ---MLTPVAINEGAALVDTVFGNKPRKTDHTRVAS--AVFSIPP-------IGTCGLIEEVAAKEFEKVAVYMSSFTPLM 403 (495)
T ss_dssp ---CCHHHHHHHHHHHHHHHHSSCCCCCCCSSCEE--EECCSSC-------EEEEECCHHHHHHHSSEEEEEEEEECCTH
T ss_pred ---cCHHHHHHHHHHHHHHhcCCCCCcCCCCCCCE--EEECCCC-------eEEEeCCHHHHHhcCCCEEEEEEecCchh
Confidence 2566799999999999997443 23444553 2222221 4455543211 111 1
Q ss_pred ----ccCCCcE-EEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHHHHHHHHH
Q 011351 418 ----GNFDPKI-ATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALEIAR 479 (488)
Q Consensus 418 ----~~~~~~~-~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 479 (488)
+.....| .|+.++ +++|+|+++++.++.++... ..+|+.+.+++ . ..++.|||++|++..++
T Consensus 404 ~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 475 (495)
T 2wpf_A 404 HNISGSKYKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCLRLNAKISDFYNTIGVHPTSAEELCSMR 475 (495)
T ss_dssp HHHHSCTTCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGGSCC
T ss_pred hhhhcCCCcEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHH
Confidence 1112457 888876 69999999988777665544 55678888876 2 34688999999988765
No 36
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=100.00 E-value=8.8e-42 Score=351.17 Aligned_cols=401 Identities=17% Similarity=0.231 Sum_probs=263.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CC---CC--C------------CccccCCCCCCCCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ER---PA--L------------TKGYLFPLDKKPARL 111 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~--~~---~~--l------------~~~~~~~~~~~~~~~ 111 (488)
++||+|||||+||++||..|++.|. +|+|||+++...- .+ |. + ...+-.... ...++
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~g~---~V~liE~~~~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~-~~~~~ 77 (500)
T 1onf_A 2 VYDLIVIGGGSGGMAAARRAARHNA---KVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTK-FSFNL 77 (500)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCC-CCCCH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCcCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccC-CccCH
Confidence 4799999999999999999999877 8999999852100 00 00 0 000000000 00000
Q ss_pred CCcccccC---CCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCC-------------CcEEEeccEEeccCCCCC
Q 011351 112 PGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS-------------GKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 112 ~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~-------------g~~i~yd~lVlAtG~~~~ 175 (488)
+.+..... .........++++.+++++.++ +..++. +++.+.+ ++++.||+||||||+.|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~id~--~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~ 154 (500)
T 1onf_A 78 PLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGT-ASFLSE--NRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPV 154 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-CCCC----------------------------CBSSEEECCCCCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEeeC--CEEEEEeccccccccccCCCceEEEeCEEEECCCCCCC
Confidence 00000000 0000001234467899999874 444543 4555543 567999999999999886
Q ss_pred cCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHH
Q 011351 176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 255 (488)
Q Consensus 176 ~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~ 255 (488)
.|+++|. +.+.+ .+.+.+... +++++|||+|.+|+|+|..|.++|.+|+++++.+++++ .+++++.+.+
T Consensus 155 -~p~i~G~--~~~~~------~~~~~~~~~-~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-~~d~~~~~~l 223 (500)
T 1onf_A 155 -FPPVKGI--ENTIS------SDEFFNIKE-SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR-KFDESVINVL 223 (500)
T ss_dssp -CCSCTTG--GGCEE------HHHHTTCCC-CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT-TSCHHHHHHH
T ss_pred -CCCCCCC--CcccC------HHHHhccCC-CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCc-ccchhhHHHH
Confidence 3544443 22222 223322222 89999999999999999999999999999999999997 4899999999
Q ss_pred HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcE-EEcCEEEEeecCccCCh-h-hhhcCCcccCCCEEeCCCCCC
Q 011351 256 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-IDADTIVIGIGAKPTVS-P-FERVGLNSSVGGIQVDGQFRT 332 (488)
Q Consensus 256 ~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~-i~~D~vi~a~G~~p~~~-~-~~~~gl~~~~g~i~vd~~~~t 332 (488)
.+.|++.||++++++++++++..+++. ..+.+++|++ +++|.||+|+|++|+++ + ++++|+..++|+|.||+++||
T Consensus 224 ~~~l~~~gv~i~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~G~i~vd~~~~t 302 (500)
T 1onf_A 224 ENDMKKNNINIVTFADVVEIKKVSDKN-LSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDENQRT 302 (500)
T ss_dssp HHHHHHTTCEEECSCCEEEEEESSTTC-EEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCBSSSCEEECTTCBC
T ss_pred HHHHHhCCCEEEECCEEEEEEEcCCce-EEEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCccccCCEEEECCCccc
Confidence 999999999999999999998654343 3678889988 99999999999999986 4 688888887778999999999
Q ss_pred CCCCEEEEceecccCCcc-----------------------CC-cccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCC
Q 011351 333 RMPGIFAIGDVAAFPLKM-----------------------YD-RTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLP 386 (488)
Q Consensus 333 ~~~~Ifa~GD~a~~~~~~-----------------------~~-~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p 386 (488)
+.|+|||+|||+..+... .+ .......+..|..||+.+|+||++.... .|..+|
T Consensus 303 ~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p 382 (500)
T 1onf_A 303 SVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKTRKTNYKLIP 382 (500)
T ss_dssp SSSSEEECSTTEEEC------------------------------CBCCCCHHHHHHHHHHHHHHHHSCTTCCCCCSSCC
T ss_pred CCCCEEEEeccccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhCCCCccCCCCCCC
Confidence 999999999999532100 00 0022457888999999999999975432 355566
Q ss_pred ceeEeccccCCCCcceeeEEeeCCCC---------cEEE----------------EccCCCcEEEEEEE--CCEEEEEEe
Q 011351 387 YFYSRVFEYEGSPRKVWWQFFGDNVG---------ETIE----------------IGNFDPKIATFWID--SGKLKGVLV 439 (488)
Q Consensus 387 ~~~~~~~~~~g~~~~~~~~~~g~~~~---------~~~~----------------~~~~~~~~~~~~~~--~~~~~g~~~ 439 (488)
+. ..++.+ +..+|.... .+.. .......+.|+.++ +++|+|+++
T Consensus 383 ~~--~~~~~~-------~a~vGl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~ 453 (500)
T 1onf_A 383 TV--IFSHPP-------IGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHI 453 (500)
T ss_dssp EE--ECCSSC-------EEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEE
T ss_pred eE--EEcCcc-------eEEEeCCHHHHHhcCCCccEEEEEEECchhhhhhccccccCCCceEEEEEEECCCCEEEEEEE
Confidence 42 222111 333443210 1111 01122457788774 699999998
Q ss_pred ecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHHHHHHHHH
Q 011351 440 ESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALEIAR 479 (488)
Q Consensus 440 ~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 479 (488)
++.++.++... ..+|+.+.+++ . ..++.|||++|++..++
T Consensus 454 ~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~ 496 (500)
T 1onf_A 454 IGLNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFLTLQ 496 (500)
T ss_dssp ESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTTHHHHCC
T ss_pred ECCCHHHHHHHHHHHHHcCCCHHHHhccccCCCCHHHHHHHhc
Confidence 77777776655 44578888776 2 33688999999998764
No 37
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=100.00 E-value=1.8e-42 Score=355.22 Aligned_cols=317 Identities=18% Similarity=0.249 Sum_probs=240.0
Q ss_pred HHHC-CCeEEeCCcEEEEeCCCcEEEeC-----CC---cEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHH
Q 011351 130 YKEK-GIEMIYQDPVTSIDIEKQTLITN-----SG---KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL 200 (488)
Q Consensus 130 ~~~~-~i~~~~~~~v~~id~~~~~v~~~-----~g---~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~ 200 (488)
+++. +++++.+ .+..++. +++.+. +| +.+.||+||||||+.|.. |+++|. +. ..+ .+.+
T Consensus 113 l~~~~gv~~~~g-~~~~i~~--~~v~v~~~~~~~g~~~~~~~~d~lviAtGs~p~~-p~i~g~--~~---~~~---~~~~ 180 (490)
T 1fec_A 113 FADTEGLTFHQG-FGALQDN--HTVLVRESADPNSAVLETLDTEYILLATGSWPQH-LGIEGD--DL---CIT---SNEA 180 (490)
T ss_dssp HHTSTTEEEEES-EEEEEET--TEEEEESSSSTTSCEEEEEEEEEEEECCCEEECC-CCSBTG--GG---CBC---HHHH
T ss_pred HhcCCCcEEEEe-EEEEeeC--CEEEEEeeccCCCCceEEEEcCEEEEeCCCCCCC-CCCCCc--cc---eec---HHHH
Confidence 4566 9999986 5777775 456553 66 679999999999998863 444443 11 222 3333
Q ss_pred HHhhhcCCeEEEECCCHHHHHHHHHHHhC---CCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351 201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (488)
Q Consensus 201 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~~---g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 277 (488)
......+++++|||+|.+|+|+|..|.++ |.+|+++++.+++++. +++++.+.+.+.+++.||+++++++|++++.
T Consensus 181 ~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~ 259 (490)
T 1fec_A 181 FYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG-FDSELRKQLTEQLRANGINVRTHENPAKVTK 259 (490)
T ss_dssp TTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTEEEEETCCEEEEEE
T ss_pred hhhhhcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEE
Confidence 33334578999999999999999999999 9999999999999974 8999999999999999999999999999986
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh-h-hhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcc
Q 011351 278 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT 354 (488)
Q Consensus 278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~-~-~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~ 354 (488)
++++. ..+.+++|+++++|.||+|+|++|+++ + ++++|+..+ +|+|.||+++||+.|+|||+|||+..+
T Consensus 260 ~~~~~-~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I~Vd~~~~t~~~~IyA~GD~~~~~------- 331 (490)
T 1fec_A 260 NADGT-RHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRV------- 331 (490)
T ss_dssp CTTSC-EEEEETTSCEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGGCSC-------
T ss_pred cCCCE-EEEEECCCcEEEcCEEEEccCCCcCccccCchhcCccCCCCCCEEECCCCccCCCCEEEEeccCCCc-------
Confidence 53333 367888998999999999999999987 4 688899876 678999999999999999999999642
Q ss_pred cccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeEeccccCCCCcceeeEEeeCCCC-------cEEE-E-------
Q 011351 355 ARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE-I------- 417 (488)
Q Consensus 355 ~~~~~~~~A~~~g~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~~~~-~------- 417 (488)
..+..|..||+.+|.||++... ..|..+|+ ...++.+ +..+|.... .+.. .
T Consensus 332 ---~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~~~-------~a~vG~~e~~a~~~~~~~~~~~~~~~~~~ 399 (490)
T 1fec_A 332 ---MLTPVAINEGAAFVDTVFANKPRATDHTKVAC--AVFSIPP-------MGVCGYVEEDAAKKYDQVAVYESSFTPLM 399 (490)
T ss_dssp ---CCHHHHHHHHHHHHHHHHSSCCCCCCCSSCCE--EECCSSC-------EEEEECCHHHHHHHCSEEEEEEEEECCHH
T ss_pred ---cCHHHHHHHHHHHHHHhcCCCCCcCCCCCccE--EEECCCC-------eEEEeCCHHHHHhcCCCEEEEEeecChhh
Confidence 2567799999999999997443 23445564 2222221 445564421 1111 1
Q ss_pred ----ccCCCcEE-EEEEE--CCEEEEEEeecCChHHhhH-HHHHHhcCCCCC-h-hhhcCCCcHHHHHHHHH
Q 011351 418 ----GNFDPKIA-TFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVD-K-AKLQQASSVEEALEIAR 479 (488)
Q Consensus 418 ----~~~~~~~~-~~~~~--~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 479 (488)
......|. |++++ +++|+|+++++.++.++.. +..+|+++.+++ . ..++.|||++|++..++
T Consensus 400 ~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 471 (490)
T 1fec_A 400 HNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELCSMR 471 (490)
T ss_dssp HHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGSCC
T ss_pred hhhhcCCCeEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccccCCCCHHHHHHHHH
Confidence 11234578 88886 6999999998877776554 455678888876 2 33688999999998765
No 38
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=100.00 E-value=4.5e-40 Score=337.11 Aligned_cols=402 Identities=18% Similarity=0.233 Sum_probs=279.2
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccc------------------------c----
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGY------------------------L---- 101 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~------------------------~---- 101 (488)
+++||+|||||+||++||..|++.|+ +|+|||+++..... ..+...+ +
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~~G~---~V~liEk~~~~gG~-~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g 77 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQLGL---KTALIEKYKGKEGK-TALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHG 77 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTC---CEEEEECCBCTTSS-BCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGT
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCC---EEEEEeCCCccCCC-CCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46899999999999999999999987 89999998632110 0000000 0
Q ss_pred CCCCCCCCCCCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCC--cEEEeccEEeccCCCCCc
Q 011351 102 FPLDKKPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASR 176 (488)
Q Consensus 102 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~i~yd~lVlAtG~~~~~ 176 (488)
........++....... ..........++++.+++++.+ .+..+++....+...+| +.+.||+||||||+.|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~ 156 (476)
T 3lad_A 78 ISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEG-HGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVE 156 (476)
T ss_dssp EECSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEES-EEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECC
T ss_pred cccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCCC
Confidence 00000000000000000 0000000113445679999986 55557776667777777 579999999999998764
Q ss_pred CCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHH
Q 011351 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 256 (488)
Q Consensus 177 ~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~ 256 (488)
+|. ++.+.+.+.+ +..+......+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++ .+++++.+.+.
T Consensus 157 ~~~-~~~~~~~v~~------~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~ 228 (476)
T 3lad_A 157 IPP-APVDQDVIVD------STGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP-AVDEQVAKEAQ 228 (476)
T ss_dssp CTT-SCCCSSSEEE------HHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-TSCHHHHHHHH
T ss_pred CCC-CCCCcccEEe------chhhhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc-ccCHHHHHHHH
Confidence 332 3322334443 333333335679999999999999999999999999999999999998 48999999999
Q ss_pred HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC---cEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCC
Q 011351 257 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQF 330 (488)
Q Consensus 257 ~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g---~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~ 330 (488)
+.+++.||++++++++++++.+++ .+ .+.+.++ +++++|.||+|+|++|++++ ++..++..+ +|+|.||+++
T Consensus 229 ~~l~~~Gv~v~~~~~v~~i~~~~~-~~-~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~ 306 (476)
T 3lad_A 229 KILTKQGLKILLGARVTGTEVKNK-QV-TVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYC 306 (476)
T ss_dssp HHHHHTTEEEEETCEEEEEEECSS-CE-EEEEESSSEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTTS
T ss_pred HHHHhCCCEEEECCEEEEEEEcCC-EE-EEEEEeCCCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCCc
Confidence 999999999999999999986533 33 4566554 67999999999999999874 677888876 5779999999
Q ss_pred CCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeEeccccCCCCcceeeEEeeC
Q 011351 331 RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGD 409 (488)
Q Consensus 331 ~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~ 409 (488)
+|+.|||||+|||+..+. .+..|..+|+.+|++|++... ..+..+|+. ..++.. +..+|.
T Consensus 307 ~t~~~~Iya~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~--~~~~~~-------~a~vGl 367 (476)
T 3lad_A 307 ATSVPGVYAIGDVVRGAM----------LAHKASEEGVVVAERIAGHKAQMNYDLIPAV--IYTHPE-------IAGVGK 367 (476)
T ss_dssp BCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHHHCCCCCCTTCCCEE--ECSSSE-------EEEEEC
T ss_pred ccCCCCEEEEEccCCCcc----------cHHHHHHHHHHHHHHhcCCCcccCCCCCCEE--EECcCC-------EEEeeC
Confidence 999999999999996432 456699999999999997542 234456642 222211 344554
Q ss_pred CCC-------cEE--EE--c--------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhh
Q 011351 410 NVG-------ETI--EI--G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKL 465 (488)
Q Consensus 410 ~~~-------~~~--~~--~--------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~ 465 (488)
... +.. .. . .....+.|+.++ +++|+|+++++.++.++... ..+|+++.+++ . ..+
T Consensus 368 te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~ 447 (476)
T 3lad_A 368 TEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMV 447 (476)
T ss_dssp CHHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSC
T ss_pred CHHHHHhcCCCEEEEEEeccccchheecCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCc
Confidence 331 111 11 0 012457787775 59999999988887776655 44578888876 3 335
Q ss_pred cCCCcHHHHHHHHHccCCcc
Q 011351 466 QQASSVEEALEIARAALPVE 485 (488)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~ 485 (488)
+.|||++|+++.|++++..+
T Consensus 448 ~~hPt~~e~~~~~~~~~~~~ 467 (476)
T 3lad_A 448 FAHPALSEALHEAALAVSGH 467 (476)
T ss_dssp CCSSCSHHHHHHHHHHHTTC
T ss_pred cCCCChHHHHHHHHHHHhcc
Confidence 88999999999998876543
No 39
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=100.00 E-value=1.9e-40 Score=337.93 Aligned_cols=391 Identities=18% Similarity=0.286 Sum_probs=270.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC------CCC------------C--CccccCCCCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE------RPA------------L--TKGYLFPLDKKPA 109 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~------~~~------------l--~~~~~~~~~~~~~ 109 (488)
+++||+|||||+||+++|.+|++.|. +|+|||++.. ... .|. + ...+-+.......
T Consensus 3 ~~~dVvIIGgG~aGl~aA~~l~~~g~---~V~liE~~~~-GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~ 78 (463)
T 2r9z_A 3 QHFDLIAIGGGSGGLAVAEKAAAFGK---RVALIESKAL-GGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTL 78 (463)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCT-THHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---C
T ss_pred ccCcEEEECCCHHHHHHHHHHHhCCC---cEEEEcCCCC-CCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCc
Confidence 46899999999999999999999877 8999999742 100 000 0 0000000000000
Q ss_pred CCCCcccccC---CCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCC
Q 011351 110 RLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP 186 (488)
Q Consensus 110 ~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~ 186 (488)
++..+..... ..........+++.+++++.+ ++..++. ++|.+ +++++.||+||||||+.|.. |+++|. +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~--~~v~~-~g~~~~~d~lviAtGs~p~~-p~i~G~--~ 151 (463)
T 2r9z_A 79 DWPRLVAGRDRYIGAINSFWDGYVERLGITRVDG-HARFVDA--HTIEV-EGQRLSADHIVIATGGRPIV-PRLPGA--E 151 (463)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEEEET--TEEEE-TTEEEEEEEEEECCCEEECC-CSCTTG--G
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEe-EEEEccC--CEEEE-CCEEEEcCEEEECCCCCCCC-CCCCCc--c
Confidence 0000000000 000000122346679999986 5666664 57777 67789999999999998763 444442 1
Q ss_pred cEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEE
Q 011351 187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 266 (488)
Q Consensus 187 gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v 266 (488)
...+ .+.+......+++++|||+|.+|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.+++.||++
T Consensus 152 ---~~~~---~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~gv~i 224 (463)
T 2r9z_A 152 ---LGIT---SDGFFALQQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ-FDPLLSATLAENMHAQGIET 224 (463)
T ss_dssp ---GSBC---HHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHTTCEE
T ss_pred ---ceec---HHHHhhhhccCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccc-cCHHHHHHHHHHHHHCCCEE
Confidence 1222 3333333345789999999999999999999999999999999998874 89999999999999999999
Q ss_pred EcCCeEEEEEeCCCCcEEEEEeCCCc-EEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEEEce
Q 011351 267 VKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGD 342 (488)
Q Consensus 267 ~~~~~v~~i~~~~~~~v~~v~l~~g~-~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD 342 (488)
++++++++++.++++ ..+.+++|+ ++++|.||+|+|++|++++ ++++++..+ +|+|.||++++|+.|||||+||
T Consensus 225 ~~~~~v~~i~~~~~~--~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD 302 (463)
T 2r9z_A 225 HLEFAVAALERDAQG--TTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGVYALGD 302 (463)
T ss_dssp ESSCCEEEEEEETTE--EEEEETTCCEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTSBCSSTTEEECGG
T ss_pred EeCCEEEEEEEeCCe--EEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCCccCCCCEEEEee
Confidence 999999999864333 467888998 8999999999999999873 577888876 6779999999999999999999
Q ss_pred ecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeEeccccCCCCcceeeEEeeCCCC-------
Q 011351 343 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------- 412 (488)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~------- 412 (488)
|+..+ ..+..|..||+.+|.||++... ..|..+|+. .|..+. +..+|....
T Consensus 303 ~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~---~~~~~~------~a~vGl~e~~a~~~~g 363 (463)
T 2r9z_A 303 ITGRD----------QLTPVAIAAGRRLAERLFDGQSERKLDYDNIPTV---VFAHPP------LSKVGLSEPEARERLG 363 (463)
T ss_dssp GGTSC----------CCHHHHHHHHHHHHHHHHSCCTTCCCCCSSCCEE---ECCSSC------EEEEECCHHHHHHHHC
T ss_pred cCCCc----------ccHHHHHHHHHHHHHHHcCCCCcccCCCCCCCEE---EeCCCC------eEEEcCCHHHHHhcCC
Confidence 98642 2566799999999999997542 235556653 222111 333443210
Q ss_pred -cEEEE------------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHHHH
Q 011351 413 -ETIEI------------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEA 474 (488)
Q Consensus 413 -~~~~~------------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~ 474 (488)
.+... ......+.+++++ +++|+|+++++.++.++... ..+++.+.+++ . ..++.|||++|+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~ 443 (463)
T 2r9z_A 364 DVLTVYETSFTPMRYALNEHGPKTAMKLVCAGPEQRVVGVHVIGDGADEMLQGFAVAVKMGATKADFDNTVAIHPGSAEE 443 (463)
T ss_dssp SCEEEEEEEECCGGGTTSSSCCCEEEEEEEETTTTEEEEEEEESTTGGGTSHHHHHHHHTTCBHHHHHTSCCCSSSSGGG
T ss_pred CCEEEEEEEcccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHH
Confidence 11110 1112457788775 69999999877777775555 44578888776 2 336889999999
Q ss_pred HHHHH
Q 011351 475 LEIAR 479 (488)
Q Consensus 475 ~~~~~ 479 (488)
+..++
T Consensus 444 ~~~~~ 448 (463)
T 2r9z_A 444 LVTLK 448 (463)
T ss_dssp GGCCC
T ss_pred HHHHH
Confidence 88754
No 40
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=100.00 E-value=2.9e-41 Score=346.04 Aligned_cols=396 Identities=19% Similarity=0.220 Sum_probs=271.9
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--C---CC--------------CCCccccCCCCCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--E---RP--------------ALTKGYLFPLDKKPA 109 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~--~---~~--------------~l~~~~~~~~~~~~~ 109 (488)
+.++||+|||||+||++||..|++.|. +|+|||++....- . .| .....+-........
T Consensus 18 ~~~~dVvIIGgG~aGl~aA~~la~~G~---~V~liE~~~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~ 94 (478)
T 3dk9_A 18 VASYDYLVIGGGSGGLASARRAAELGA---RAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKF 94 (478)
T ss_dssp EEECSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCcc
Confidence 346899999999999999999999987 8999997742100 0 00 000000000000000
Q ss_pred CCCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCC--CCCCCC
Q 011351 110 RLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGGY 184 (488)
Q Consensus 110 ~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~--~~~g~~ 184 (488)
.+....... ...........++..+++++.+ .+..++.....+. .+++++.||+||||||+.+..++ +++|..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~-~~g~~~~~d~lviAtG~~p~~p~~~~i~G~~ 172 (478)
T 3dk9_A 95 NWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRG-HAAFTSDPKPTIE-VSGKKYTAPHILIATGGMPSTPHESQIPGAS 172 (478)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEECSCSSCEEE-ETTEEEECSCEEECCCEEECCCCTTTSTTGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEeeCCeEEEE-ECCEEEEeeEEEEccCCCCCCCCcCCCCCCc
Confidence 000000000 0000000122345679999886 5666777666777 46778999999999999876431 434422
Q ss_pred CCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCc
Q 011351 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 264 (488)
Q Consensus 185 ~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV 264 (488)
... +++.+......+++++|||+|.+|+|+|..|.++|.+|+++++.+++++ .+++++.+.+.+.+++.||
T Consensus 173 -----~~~---~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~d~~~~~~~~~~l~~~gv 243 (478)
T 3dk9_A 173 -----LGI---TSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR-SFDSMISTNCTEELENAGV 243 (478)
T ss_dssp -----GSB---CHHHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT-TSCHHHHHHHHHHHHHTTC
T ss_pred -----eeE---chHHhhchhhcCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcccc-ccCHHHHHHHHHHHHHCCC
Confidence 111 2344444344579999999999999999999999999999999999996 4899999999999999999
Q ss_pred EEEcCCeEEEEEeCCCCcEEEEEeCC---C----cEEEcCEEEEeecCccCCh-h-hhhcCCccc-CCCEEeCCCCCCCC
Q 011351 265 KFVKGASIKNLEAGSDGRVAAVKLED---G----STIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRM 334 (488)
Q Consensus 265 ~v~~~~~v~~i~~~~~~~v~~v~l~~---g----~~i~~D~vi~a~G~~p~~~-~-~~~~gl~~~-~g~i~vd~~~~t~~ 334 (488)
++++++.+++++..+++....+.+.+ | +++++|.|++|+|++|+++ + ++.+|++.+ +|+|.||++++|+.
T Consensus 244 ~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~ 323 (478)
T 3dk9_A 244 EVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNV 323 (478)
T ss_dssp EEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTCBCSS
T ss_pred EEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCcccCC
Confidence 99999999999865555233566665 2 5799999999999999987 4 688888875 67899999999999
Q ss_pred CCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCC-C--CCCCCCCceeEeccccCCCCcceeeEEeeCCC
Q 011351 335 PGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ-T--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNV 411 (488)
Q Consensus 335 ~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~-~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~ 411 (488)
|||||+|||+..+. .+..|..+|+.+|.+|++.. . ..+..+|+. .|..+- +..+|...
T Consensus 324 ~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~---~~~~p~------~a~vGlte 384 (478)
T 3dk9_A 324 KGIYAVGDVCGKAL----------LTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTV---VFSHPP------IGTVGLTE 384 (478)
T ss_dssp TTEEECGGGGCSSC----------CHHHHHHHHHHHHHHHHSCCTTCCCCCTTCCEE---ECCSSC------EEEEECCH
T ss_pred CCEEEEEecCCCCc----------cHhHHHHHHHHHHHHHcCCCCcccCCCCCCCeE---EECCCc------eEEeeCCH
Confidence 99999999995432 45678999999999999752 2 245556642 232211 33444432
Q ss_pred C---------cEEEE----c--------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhh
Q 011351 412 G---------ETIEI----G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKL 465 (488)
Q Consensus 412 ~---------~~~~~----~--------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~ 465 (488)
. .+... . +....+.|+.++ +++|+|+++++.++.++... ..+|+++.+++ . ..+
T Consensus 385 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~ 464 (478)
T 3dk9_A 385 DEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTV 464 (478)
T ss_dssp HHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSC
T ss_pred HHHHhhCCCccEEEEEeecCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcc
Confidence 1 01110 0 112357787764 59999999988877776655 44578888876 2 446
Q ss_pred cCCCcHHHHHHH
Q 011351 466 QQASSVEEALEI 477 (488)
Q Consensus 466 ~~~~~~~~~~~~ 477 (488)
+.|||++|++..
T Consensus 465 ~~hPt~~e~~~~ 476 (478)
T 3dk9_A 465 AIHPTSSEELVT 476 (478)
T ss_dssp CCSSSSGGGGGS
T ss_pred cCCCChHHHHHh
Confidence 899999998764
No 41
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=100.00 E-value=2.1e-40 Score=337.49 Aligned_cols=397 Identities=19% Similarity=0.251 Sum_probs=271.7
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC----CCCccccC----------CC-----CCCCCCCC
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP----ALTKGYLF----------PL-----DKKPARLP 112 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~----~l~~~~~~----------~~-----~~~~~~~~ 112 (488)
+||+|||||+||++||..|++.|. +|+|||+++....... .-++.++. .. .....++.
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~---~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~ 78 (455)
T 2yqu_A 2 YDLLVIGAGPGGYVAAIRAAQLGM---KVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLP 78 (455)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHH
T ss_pred CCEEEECCChhHHHHHHHHHHCCC---eEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHH
Confidence 689999999999999999999987 8999999864321000 00000000 00 00000000
Q ss_pred Cccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeC-CCcEEEeccEEeccCCCCCcCCCCCCCCCCcE
Q 011351 113 GFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN-SGKLLKYGSLIVATGCTASRFPEKIGGYLPGV 188 (488)
Q Consensus 113 ~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~-~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv 188 (488)
.+.... .........+++++.+++++.+. +..+++ +.+.+. +|+++.||+||+|||+.|.. |+.++.+..++
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~-~~~i~~--~~~~v~~~g~~~~~d~lviAtG~~p~~-~~~~g~~~~~v 154 (455)
T 2yqu_A 79 ALMAHKDKVVQANTQGVEFLFKKNGIARHQGT-ARFLSE--RKVLVEETGEELEARYILIATGSAPLI-PPWAQVDYERV 154 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESC-EEESSS--SEEEETTTCCEEEEEEEEECCCEEECC-CTTBCCCSSSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEecC--CeEEEeeCCEEEEecEEEECCCCCCCC-CCCCCCCcCcE
Confidence 000000 00000001245566799999875 434443 444443 56789999999999998764 44445333333
Q ss_pred EEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEc
Q 011351 189 HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK 268 (488)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~ 268 (488)
.+ .....+....+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.||++++
T Consensus 155 ~~------~~~~~~~~~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~ 227 (455)
T 2yqu_A 155 VT------STEALSFPEVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPT-MDLEVSRAAERVFKKQGLTIRT 227 (455)
T ss_dssp EC------HHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHHTCEEEC
T ss_pred ec------hHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccc-cCHHHHHHHHHHHHHCCCEEEE
Confidence 32 2223222235789999999999999999999999999999999998874 7899999999999999999999
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecc
Q 011351 269 GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAA 345 (488)
Q Consensus 269 ~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~ 345 (488)
+++|++++.++ +. ..+.+++|+++++|.||+|+|.+|+.++ ++..++..+ +|++.||++++|+.|+|||+|||+.
T Consensus 228 ~~~V~~i~~~~-~~-v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~iya~GD~~~ 305 (455)
T 2yqu_A 228 GVRVTAVVPEA-KG-ARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRVPHIYAIGDVVR 305 (455)
T ss_dssp SCCEEEEEEET-TE-EEEEETTSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTTSBCSSTTEEECGGGSS
T ss_pred CCEEEEEEEeC-CE-EEEEECCCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCCcccCCCCEEEEecCCC
Confidence 99999998643 33 3567778889999999999999999887 678888865 5779999999999999999999997
Q ss_pred cCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCC--CCCCceeEeccccCCCCcceeeEEeeCCCC-------cEEE
Q 011351 346 FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE 416 (488)
Q Consensus 346 ~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~--~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~~~~ 416 (488)
.+. .+..|..||+.+|.+|++.. ..+ ..+|+ ...++.. +..+|.... ++..
T Consensus 306 ~~~----------~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~--~~~~~~~-------~a~~G~~~~~a~~~g~~~~~ 365 (455)
T 2yqu_A 306 GPM----------LAHKASEEGIAAVEHMVRGF-GHVDYQAIPS--VVYTHPE-------IAAVGYTEEELKAQGIPYKV 365 (455)
T ss_dssp SCC----------CHHHHHHHHHHHHHHHHHSC-CCCCGGGCCE--EECSSSE-------EEEEECCHHHHHHHTCCEEE
T ss_pred Ccc----------CHHHHHHhHHHHHHHHcCCC-ccCCCCCCCE--EEEcCCc-------eEEEECCHHHHHHcCCCEEE
Confidence 532 45569999999999999743 333 33453 2222211 333443211 1111
Q ss_pred --E----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhh-HHHHHHhcCCCCCh--hhhcCCCcHHHHHHHHH
Q 011351 417 --I----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVDK--AKLQQASSVEEALEIAR 479 (488)
Q Consensus 417 --~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 479 (488)
. ......+.+++++ +++|+|+++++..+.++. .+..+++++.+++. ...+.||+++|++..++
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~~~~~~~~~Pt~~e~~~~~~ 445 (455)
T 2yqu_A 366 GKFPYSASGRARAMGETEGFIKVLAHAKTDRILGVHGIGARVGDVLAEAALALFFKASAEDLGRAPHAHPSLSEILKEAA 445 (455)
T ss_dssp EEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTHHHHHHHH
T ss_pred EEEEcccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHH
Confidence 0 0112457888885 799999998766665544 44556788888873 34688999999999998
Q ss_pred ccCCc
Q 011351 480 AALPV 484 (488)
Q Consensus 480 ~~~~~ 484 (488)
+++..
T Consensus 446 ~~~~~ 450 (455)
T 2yqu_A 446 LAAWE 450 (455)
T ss_dssp HHHHS
T ss_pred HHHhc
Confidence 76543
No 42
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=100.00 E-value=5.4e-41 Score=342.49 Aligned_cols=395 Identities=19% Similarity=0.270 Sum_probs=276.3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC------CC--------------CCccccCCCCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER------PA--------------LTKGYLFPLDKKPA 109 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~------~~--------------l~~~~~~~~~~~~~ 109 (488)
.++||+|||||++|+++|..|++.|+ +|+|||++.. .... |. ....+.........
T Consensus 4 ~~~DVvVIGaG~aGl~aA~~la~~G~---~V~liEk~~~-GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~ 79 (463)
T 4dna_A 4 FDYDLFVIGGGSGGVRSGRLAAALGK---KVAIAEEFRY-GGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRF 79 (463)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHTTTC---CEEEEESSCT-THHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEE
T ss_pred CCCcEEEECcCHHHHHHHHHHHhCCC---EEEEEeCCCC-CCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCc
Confidence 46899999999999999999999987 8999999431 1000 00 00000000000000
Q ss_pred CCCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEe-CCCcEEEeccEEeccCCCCCcCCCCCCCCC
Q 011351 110 RLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT-NSGKLLKYGSLIVATGCTASRFPEKIGGYL 185 (488)
Q Consensus 110 ~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~-~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~ 185 (488)
++....... ..........+++..+++++.+ .+..++ .+.+.+ .+++.+.||+||+|||+.+...|.++|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~--~~~v~~~~~~~~~~~d~lviAtG~~p~~~p~i~G~~- 155 (463)
T 4dna_A 80 DWAKLVAAKEQEIARLEGLYRKGLANAGAEILDT-RAELAG--PNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHE- 155 (463)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEES-CEEESS--SSEEEETTTTEEEEEEEEEECCCEEECCCTTSTTGG-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEee--CCEEEEecCCeEEEeCEEEEecCCCcccCCCCCCcc-
Confidence 000000000 0000001123345569999886 665554 467777 57788999999999999876234444422
Q ss_pred CcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcE
Q 011351 186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 265 (488)
Q Consensus 186 ~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~ 265 (488)
... +.+.+......+++++|||+|.+|+|+|..+.+.|.+|+++++.+++++ .+++++.+.+.+.+++.||+
T Consensus 156 ----~~~---~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~-~~~~~~~~~l~~~l~~~Gv~ 227 (463)
T 4dna_A 156 ----LCI---TSNEAFDLPALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILS-RFDQDMRRGLHAAMEEKGIR 227 (463)
T ss_dssp ----GCB---CHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHTTCE
T ss_pred ----ccc---cHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHHCCCE
Confidence 122 2333433334689999999999999999999999999999999999886 48999999999999999999
Q ss_pred EEcCCeEEEEEeCCCCcEEEEE-eCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEEEc
Q 011351 266 FVKGASIKNLEAGSDGRVAAVK-LEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIG 341 (488)
Q Consensus 266 v~~~~~v~~i~~~~~~~v~~v~-l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~G 341 (488)
+++++.|++++..+++. ..|. +++|+ +++|.||+|+|++|++.+ +++.|+..+ +|+|.||++++|+.|||||+|
T Consensus 228 i~~~~~v~~i~~~~~~~-~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~iya~G 305 (463)
T 4dna_A 228 ILCEDIIQSVSADADGR-RVATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALG 305 (463)
T ss_dssp EECSCCEEEEEECTTSC-EEEEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTCBCSSTTEEECS
T ss_pred EECCCEEEEEEEcCCCE-EEEEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCCCCCCCCEEEEE
Confidence 99999999998754443 3677 88998 999999999999999887 788898876 578999999999999999999
Q ss_pred eecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeEeccccCCCCcceeeEEeeCCCCc------
Q 011351 342 DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE------ 413 (488)
Q Consensus 342 D~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~------ 413 (488)
||+..+. .+..|..||+.+|+||++.... .+..+|+. .|..+- +..+|....+
T Consensus 306 D~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~---~~~~p~------~a~vG~te~~a~~~~~ 366 (463)
T 4dna_A 306 DVTDRVQ----------LTPVAIHEAMCFIETEYKNNPTSPDHDLIATA---VFSQPE------IGTVGITEEEAARKFQ 366 (463)
T ss_dssp GGGSSCC----------CHHHHHHHHHHHHHHHHSSCCCCCCCSCCCEE---ECSSSC------EEEEECCHHHHHHHSS
T ss_pred ecCCCCC----------ChHHHHHHHHHHHHHHcCCCCcccCCCCCCEE---EECCCC------eEEecCCHHHHHHcCC
Confidence 9998432 4567999999999999975433 34455542 233221 4445544321
Q ss_pred -EE-EEc-----------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHHH-HHHhcCCCCC-h-hhhcCCCcHHHHH
Q 011351 414 -TI-EIG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVD-K-AKLQQASSVEEAL 475 (488)
Q Consensus 414 -~~-~~~-----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~ 475 (488)
.. ... +....+.|+.++ +++|+|+++++.++.++.... .+|+.+.+++ . ..++.|||++|++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~ 446 (463)
T 4dna_A 367 EIEVYRAEFRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAEEL 446 (463)
T ss_dssp EEEEEEEEECCTTHHHHCCCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSGGGG
T ss_pred CeEEEEEeccccchhhcCCCceEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHH
Confidence 11 010 012357788775 599999999888887766554 4578888876 2 3469999999999
Q ss_pred HHHHcc
Q 011351 476 EIARAA 481 (488)
Q Consensus 476 ~~~~~~ 481 (488)
.+++..
T Consensus 447 ~~~~~~ 452 (463)
T 4dna_A 447 VTMYQP 452 (463)
T ss_dssp TCCCSC
T ss_pred HHHhhh
Confidence 988744
No 43
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=100.00 E-value=3.4e-40 Score=335.77 Aligned_cols=395 Identities=16% Similarity=0.225 Sum_probs=269.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-Ccccc-----------------CCCC--C
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TKGYL-----------------FPLD--K 106 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~~~l-~~~~~-----------------~~~~--~ 106 (488)
.++||+|||||+||++||..|++.|. +|+|||++.. ... +... ++.++ +... .
T Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~---~V~lie~~~~-GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~ 79 (458)
T 1lvl_A 4 IQTTLLIIGGGPGGYVAAIRAGQLGI---PTVLVEGQAL-GGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVAS 79 (458)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHTC---CEEEECSSCT-THHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCC---EEEEEccCCC-CCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCC
Confidence 35899999999999999999999987 8999999432 100 0000 00000 0000 0
Q ss_pred CCCCCCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCC
Q 011351 107 KPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGG 183 (488)
Q Consensus 107 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~ 183 (488)
...++..+.... .........+++++.+++++.++.+ .++ .+++.+++ +++.||+||||||+.|..+|.++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~~--~~~v~v~~-~~~~~d~lviATGs~p~~~~~~~~- 154 (458)
T 1lvl_A 80 PRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAK-VLD--GKQVEVDG-QRIQCEHLLLATGSSSVELPMLPL- 154 (458)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEE-EEE--TTEEEETT-EEEECSEEEECCCEEECCBTTBCC-
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEE-Ecc--CCEEEEee-EEEEeCEEEEeCCCCCCCCCCCCc-
Confidence 000000000000 0000000124567789999987544 354 46788866 779999999999998864432331
Q ss_pred CCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcC
Q 011351 184 YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG 263 (488)
Q Consensus 184 ~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~G 263 (488)
+ ..+. + ..........+++++|||+|.+|+|+|..|++.|.+|+++++.+++++ .+++++.+.+.+.+++.|
T Consensus 155 ~-~~v~---~---~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~g 226 (458)
T 1lvl_A 155 G-GPVI---S---STEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP-TYDSELTAPVAESLKKLG 226 (458)
T ss_dssp B-TTEE---C---HHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHT
T ss_pred c-CcEe---c---HHHHhhhhccCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHHCC
Confidence 1 1222 2 223322233578999999999999999999999999999999999998 589999999999999999
Q ss_pred cEEEcCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeecCccCChh--hhhcCCcccCCCEEeCCCCCCCCCCEEE
Q 011351 264 VKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMPGIFA 339 (488)
Q Consensus 264 V~v~~~~~v~~i~~~~~~~v~~v~l~~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~~~~Ifa 339 (488)
|++++++++++++. +.+ .+...+| +++++|.||+|+|++|+.++ ++.+|+..++++|.||++++|+.|+|||
T Consensus 227 v~i~~~~~v~~i~~---~~v-~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~~i~vd~~~~t~~~~Iya 302 (458)
T 1lvl_A 227 IALHLGHSVEGYEN---GCL-LANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERCQTSMHNVWA 302 (458)
T ss_dssp CEEETTCEEEEEET---TEE-EEECSSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETTEECCCTTCBCSSTTEEE
T ss_pred CEEEECCEEEEEEe---CCE-EEEECCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCCEEeECCCCcCCCCCEEE
Confidence 99999999999984 223 3444456 68999999999999999886 5788888753389999999999999999
Q ss_pred EceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeEeccccCCCCcceeeEEeeCCCC-----
Q 011351 340 IGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG----- 412 (488)
Q Consensus 340 ~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~----- 412 (488)
+|||+..+. .+..|..||+.+|.+|++.. .+ +..+|+ ...++.. +..+|....
T Consensus 303 ~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~--~~~~~p~-------~a~vG~~e~~a~~~ 362 (458)
T 1lvl_A 303 IGDVAGEPM----------LAHRAMAQGEMVAEIIAGKA-RRFEPAAIAA--VCFTDPE-------VVVVGKTPEQASQQ 362 (458)
T ss_dssp CGGGGCSSC----------CHHHHHHHHHHHHHHHTTCC-CCCCCSCCCE--EECSSSE-------EEEEECCHHHHHHT
T ss_pred eeccCCCcc----------cHHHHHHHHHHHHHHhcCCC-ccCCCCCCCE--EEECCCC-------eEEEeCCHHHHHHc
Confidence 999998542 45679999999999999743 33 344453 2222211 233333211
Q ss_pred --cEEE--E----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHh-hHHHHHHhcCCCCCh--hhhcCCCcHHH
Q 011351 413 --ETIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEEF-QLLPTLARSQPFVDK--AKLQQASSVEE 473 (488)
Q Consensus 413 --~~~~--~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~ 473 (488)
++.. . ......+.+++++ +++|+|+++++..+.++ ..+..+|+++.+++. ..++.|||++|
T Consensus 363 g~~~~~~~~~~~~~~~~~~~~~~~g~~kl~~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e 442 (458)
T 1lvl_A 363 GLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGE 442 (458)
T ss_dssp TCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTGGGHHHHHHHHHHHTCBHHHHHTSCCCTTCTTH
T ss_pred CCCEEEEEEECccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCCHHH
Confidence 1111 0 0112458888884 69999999877766554 455666888888763 33588999999
Q ss_pred HHHHHHccCCcc
Q 011351 474 ALEIARAALPVE 485 (488)
Q Consensus 474 ~~~~~~~~~~~~ 485 (488)
++..+++.+..+
T Consensus 443 ~~~~a~~~~~~~ 454 (458)
T 1lvl_A 443 AVQEAALRALGH 454 (458)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhcc
Confidence 999998766543
No 44
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=100.00 E-value=1.1e-40 Score=342.05 Aligned_cols=397 Identities=17% Similarity=0.138 Sum_probs=268.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCC-----CccccCCC--CCCCCCCCCc--c----c
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPAL-----TKGYLFPL--DKKPARLPGF--H----T 116 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l-----~~~~~~~~--~~~~~~~~~~--~----~ 116 (488)
.++||+|||||+||++||..|++.|. +|+|||+++.- .. +.. ++.++... .......+.+ . .
T Consensus 7 ~~~DvvVIGgG~aGl~aA~~la~~G~---~V~liE~~~~G-Gt-c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 81 (492)
T 3ic9_A 7 INVDVAIIGTGTAGMGAYRAAKKHTD---KVVLIEGGAYG-TT-CARVGCMPSKLLIAAADASYHASQTDLFGIQVDRIS 81 (492)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTCS---CEEEEESSCSS-CH-HHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEEE
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCC---cEEEEeCCCCC-Cc-ccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCCc
Confidence 35899999999999999999999987 89999997521 00 000 00000000 0000000000 0 0
Q ss_pred ccCCCCCCCCH-----------hHHHHC-CCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCC
Q 011351 117 CVGSGGERQTP-----------EWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY 184 (488)
Q Consensus 117 ~~~~~~~~~~~-----------~~~~~~-~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~ 184 (488)
........+.. ..+... +++++.+ ...-. +.++|.+.+++++.||+||||||+.|.. |+.++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g-~a~~~--~~~~v~~~~~~~~~~d~lViATGs~p~~-p~~~~~~ 157 (492)
T 3ic9_A 82 VNGKAVMKRIQTERDRFVGFVVESVESFDEQDKIRG-FAKFL--DEHTLQVDDHSQVIAKRIVIATGSRPNY-PEFLAAA 157 (492)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEES-CEEEE--ETTEEEETTTEEEEEEEEEECCCEECCC-CHHHHTT
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEE-EEEEe--cCCEEEEcCCcEEEeCEEEEccCCCCcC-CCCCCcc
Confidence 00000000000 111111 3445543 33223 3568888888899999999999998873 4433332
Q ss_pred CCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCc
Q 011351 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 264 (488)
Q Consensus 185 ~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV 264 (488)
.+.+.+ ++.+......+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++. |
T Consensus 158 ~~~v~t------~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~-V 229 (492)
T 3ic9_A 158 GSRLLT------NDNLFELNDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL-QDEEMKRYAEKTFNEE-F 229 (492)
T ss_dssp GGGEEC------HHHHTTCSSCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC-CCHHHHHHHHHHHHTT-S
T ss_pred CCcEEc------HHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-CCHHHHHHHHHHHhhC-c
Confidence 233332 3334343456899999999999999999999999999999999999874 7999999999999988 9
Q ss_pred EEEcCCeEEEEEeCCCCcEEEEEeC--CC--cEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeC-CCCCCCCCC
Q 011351 265 KFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVD-GQFRTRMPG 336 (488)
Q Consensus 265 ~v~~~~~v~~i~~~~~~~v~~v~l~--~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd-~~~~t~~~~ 336 (488)
++++++++++++..+ +.+ .+.+. +| +++++|.|++|+|++|++++ ++.+|+..+ +|+|.|| ++++|+.|+
T Consensus 230 ~i~~~~~v~~i~~~~-~~v-~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t~~~~ 307 (492)
T 3ic9_A 230 YFDAKARVISTIEKE-DAV-EVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDH 307 (492)
T ss_dssp EEETTCEEEEEEECS-SSE-EEEEECTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCBCSSTT
T ss_pred EEEECCEEEEEEEcC-CEE-EEEEEeCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccccCCCCC
Confidence 999999999998653 333 35553 67 67999999999999999988 788899876 6789999 899999999
Q ss_pred EEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcC-CCC--CCCCCCceeEeccccCCCCcceeeEEeeCCCC-
Q 011351 337 IFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA-QTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG- 412 (488)
Q Consensus 337 Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~-~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~- 412 (488)
|||+|||+..+. .+..|..||+.+|.||++. ... .+..+|+ ..|..+ .+..+|....
T Consensus 308 IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~---~~~~~p------~~a~vGlte~~ 368 (492)
T 3ic9_A 308 IFVAGDANNTLT----------LLHEAADDGKVAGTNAGAYPVIAQGQRRAPLS---VVFTEP------QVASVGLSLRQ 368 (492)
T ss_dssp EEECGGGGTSSC----------SHHHHHHHHHHHHHHHHHTTSCCEECCCCCEE---EECSSS------EEEEEESCHHH
T ss_pred EEEEEecCCCCc----------cHHHHHHHHHHHHHHHcCCCCCcccCCCCCcE---EEECCC------CeEEecCCHHH
Confidence 999999998542 4567999999999999973 222 2333443 222211 1333443321
Q ss_pred -----------cEEE-Ec-----------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hh
Q 011351 413 -----------ETIE-IG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AK 464 (488)
Q Consensus 413 -----------~~~~-~~-----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~ 464 (488)
.... .- .....+.|+.++ +++|+|+++++.++.++... ..+|+.+.+++ . ..
T Consensus 369 a~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~ 448 (492)
T 3ic9_A 369 IEDLYADQDAANYVVGQVSFEGQGRSRVMGKNKGLLNVYADRTSGEFLGAEMFGPAAEHIGHLLAWARQQQMTVQAMLTM 448 (492)
T ss_dssp HHHHCSCSSSCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHTTS
T ss_pred HHhccCccCCccEEEEEEEeccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhC
Confidence 1110 00 112457888775 59999999988888777655 44578888876 2 44
Q ss_pred hcCCCcHHHHHHHHHccCCc
Q 011351 465 LQQASSVEEALEIARAALPV 484 (488)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~ 484 (488)
++.|||++|+++.|++++.+
T Consensus 449 ~~~hPt~~e~~~~a~~~~~~ 468 (492)
T 3ic9_A 449 PFYHPVIEEGLRTALRDAQQ 468 (492)
T ss_dssp CCCTTCTHHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHH
Confidence 58899999999999887654
No 45
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=100.00 E-value=2.3e-41 Score=347.01 Aligned_cols=395 Identities=20% Similarity=0.254 Sum_probs=274.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC------CC--------------CCccccCCCCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER------PA--------------LTKGYLFPLDKKPA 109 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~------~~--------------l~~~~~~~~~~~~~ 109 (488)
.++||+|||||+||++||..|++.|. +|+|||++.. .... |. ....+.........
T Consensus 25 ~~~DVvVIGgG~aGl~aA~~la~~G~---~V~liEk~~~-GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~ 100 (484)
T 3o0h_A 25 FDFDLFVIGSGSGGVRAARLAGALGK---RVAIAEEYRI-GGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIF 100 (484)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCT-THHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEE
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCcC---EEEEEeCCCC-CCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCcc
Confidence 35899999999999999999999987 8999999431 1000 00 00000000000000
Q ss_pred CCCCcccc---cCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeC-CCcEEEeccEEeccCCCCCcCCCCCCCCC
Q 011351 110 RLPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN-SGKLLKYGSLIVATGCTASRFPEKIGGYL 185 (488)
Q Consensus 110 ~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~-~g~~i~yd~lVlAtG~~~~~~~~~~g~~~ 185 (488)
++...... ...........++++.+++++.+ .+..++. +.+.+. +++.+.||+||+|||+.+...|.++|.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~i~~--~~v~v~~~~~~~~~d~lviAtG~~p~~~p~i~G~~- 176 (484)
T 3o0h_A 101 NWEKLVAAKNKEISRLEGLYREGLQNSNVHIYES-RAVFVDE--HTLELSVTGERISAEKILIATGAKIVSNSAIKGSD- 176 (484)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEEEET--TEEEETTTCCEEEEEEEEECCCEEECCC--CBTGG-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEeeC--CEEEEecCCeEEEeCEEEEccCCCcccCCCCCCcc-
Confidence 00000000 00000001123446679999886 6777764 567776 7788999999999999876234444422
Q ss_pred CcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcE
Q 011351 186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 265 (488)
Q Consensus 186 ~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~ 265 (488)
.+.+ .+.+......+++++|||+|.+|+|+|..+.+.|.+|+++++.+++++. +++++.+.+.+.+++.||+
T Consensus 177 -~~~~------~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~ 248 (484)
T 3o0h_A 177 -LCLT------SNEIFDLEKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRN-FDYDLRQLLNDAMVAKGIS 248 (484)
T ss_dssp -GSBC------TTTGGGCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHTCE
T ss_pred -cccc------HHHHHhHHhcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccc-cCHHHHHHHHHHHHHCCCE
Confidence 1111 1222222345899999999999999999999999999999999998875 7999999999999999999
Q ss_pred EEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEEEce
Q 011351 266 FVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGD 342 (488)
Q Consensus 266 v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD 342 (488)
++++++|++++.++ +.+ .+.+.+|+++++|.||+|+|++|+..+ ++..|+..+ +|+|.||++++|+.|||||+||
T Consensus 249 i~~~~~V~~i~~~~-~~v-~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD 326 (484)
T 3o0h_A 249 IIYEATVSQVQSTE-NCY-NVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVGD 326 (484)
T ss_dssp EESSCCEEEEEECS-SSE-EEEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGG
T ss_pred EEeCCEEEEEEeeC-CEE-EEEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCCCCCCCCEEEEEe
Confidence 99999999998653 344 688899999999999999999999887 678888876 5779999999999999999999
Q ss_pred ecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeEeccccCCCCcceeeEEeeCCCCc-------
Q 011351 343 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE------- 413 (488)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~------- 413 (488)
|+..+. .+..|..+|+.+|++|++.... .+..+|+. .|..+- +..+|....+
T Consensus 327 ~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~---~~~~p~------~a~vGlte~~a~~~g~~ 387 (484)
T 3o0h_A 327 VTGHIQ----------LTPVAIHDAMCFVKNAFENTSTTPDYDLITTA---VFSQPE------IGTVGLSEEDALHRYKR 387 (484)
T ss_dssp GGTSCC----------CHHHHHHHHHHHHHHHHC---CCCCCTTCCEE---ECCSSC------EEEEECCHHHHHHHCSE
T ss_pred cCCCCc----------CHHHHHHHHHHHHHHHcCCCCCcCCCCCCcEE---EECCCC------EEEeeCCHHHHHHcCCC
Confidence 997432 4567999999999999975433 34556642 333221 4455544321
Q ss_pred EE-EEc-----------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHHHHHH
Q 011351 414 TI-EIG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALE 476 (488)
Q Consensus 414 ~~-~~~-----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~ 476 (488)
+. ... .....+.|+.++ +++|+|+++++.++.++... ..+|+.+.+++ . ..++.|||++|++.
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~ 467 (484)
T 3o0h_A 388 VEIYRTVFRPMRNVLSGSPEKMFMKLVVDGESRIVVGAHVLGENAGEIAQLIGISLKGKLTKDIFDKTMAVHPTMSEELV 467 (484)
T ss_dssp EEEEEEEECCHHHHHHTCCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGG
T ss_pred EEEEEecCCcchhhccCCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHHHH
Confidence 11 110 112457787775 59999999988888776655 44578888876 3 44699999999999
Q ss_pred HHHcc
Q 011351 477 IARAA 481 (488)
Q Consensus 477 ~~~~~ 481 (488)
+++..
T Consensus 468 ~~~~~ 472 (484)
T 3o0h_A 468 TMYKP 472 (484)
T ss_dssp CCCSC
T ss_pred HHhhh
Confidence 88743
No 46
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=100.00 E-value=1.5e-39 Score=333.96 Aligned_cols=399 Identities=19% Similarity=0.233 Sum_probs=270.5
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC-CCCCcc---------------------------c
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER-PALTKG---------------------------Y 100 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~-~~l~~~---------------------------~ 100 (488)
.+++||+|||||+||++||..|++.|. +|+|||+.+..++.. ..+-.. +
T Consensus 4 ~~~~DvvVIG~G~aGl~aA~~la~~G~---~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~ 80 (488)
T 3dgz_A 4 QQSFDLLVIGGGSGGLACAKEAAQLGK---KVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHY 80 (488)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCC---eEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhc
Confidence 346899999999999999999999987 899999843222110 000000 0
Q ss_pred cCCCC-CCCCCCCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCC--cEEEeccEEeccCCCC
Q 011351 101 LFPLD-KKPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTA 174 (488)
Q Consensus 101 ~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~i~yd~lVlAtG~~~ 174 (488)
-.... ....++....... ...........+++.+++++.+ .+..+++....+.+.+| .++.||+||||||+.|
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g-~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p 159 (488)
T 3dgz_A 81 GWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNI-KASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRP 159 (488)
T ss_dssp TCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECC-EEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEE
T ss_pred CcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCC
Confidence 00000 0000000000000 0000000112345678998864 66666666566666666 4799999999999988
Q ss_pred CcCCC-CCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHH
Q 011351 175 SRFPE-KIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ 253 (488)
Q Consensus 175 ~~~~~-~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~ 253 (488)
.. |+ ++|.+... . +++.+......+++++|||+|.+|+|+|..|.++|.+|+++++.. +++ .+++++.+
T Consensus 160 ~~-p~~i~G~~~~~----~---~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~l~-~~d~~~~~ 229 (488)
T 3dgz_A 160 RY-PTQVKGALEYG----I---TSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSI-PLR-GFDQQMSS 229 (488)
T ss_dssp CC-CSSCBTHHHHC----B---CHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-SST-TSCHHHHH
T ss_pred CC-CCCCCCccccc----C---cHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc-ccc-cCCHHHHH
Confidence 64 43 45431111 1 233333333467899999999999999999999999999999864 555 47999999
Q ss_pred HHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC---Cc--EEEcCEEEEeecCccCChh--hhhcCCccc--CCCE
Q 011351 254 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GS--TIDADTIVIGIGAKPTVSP--FERVGLNSS--VGGI 324 (488)
Q Consensus 254 ~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~---g~--~i~~D~vi~a~G~~p~~~~--~~~~gl~~~--~g~i 324 (488)
.+.+.+++.||++++++.+++++..+++.+ .+.+.+ |+ ++++|.|++|+|++|++++ ++..++..+ +|+|
T Consensus 230 ~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~-~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i 308 (488)
T 3dgz_A 230 LVTEHMESHGTQFLKGCVPSHIKKLPTNQL-QVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKI 308 (488)
T ss_dssp HHHHHHHHTTCEEEETEEEEEEEECTTSCE-EEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCB
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEEcCCCcE-EEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeE
Confidence 999999999999999999999986444443 344433 54 4799999999999999987 678888875 6789
Q ss_pred EeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeEeccccCCCCcce
Q 011351 325 QVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKV 402 (488)
Q Consensus 325 ~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~ 402 (488)
.||+++||+.|||||+|||+... ...+..|..+|+.+|.||++.... .+..+|+.. |..+
T Consensus 309 ~vd~~~~t~~~~IyA~GD~~~~~---------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~---~~~p------ 370 (488)
T 3dgz_A 309 IVDAQEATSVPHIYAIGDVAEGR---------PELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTV---FTPL------ 370 (488)
T ss_dssp CCCTTSBCSSTTEEECGGGBTTC---------CCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEE---CSSS------
T ss_pred eECCCCccCCCCEEEeEEecCCC---------CcchhHHHHHHHHHHHHHcCCCCccCCCCCCCEEE---ECCC------
Confidence 99999999999999999998521 115567999999999999975433 355566532 2211
Q ss_pred eeEEeeCCCC---------cE-EEEcc------------CCCcEEEEEEE---CCEEEEEEeecCChHHhhHH-HHHHhc
Q 011351 403 WWQFFGDNVG---------ET-IEIGN------------FDPKIATFWID---SGKLKGVLVESGSPEEFQLL-PTLARS 456 (488)
Q Consensus 403 ~~~~~g~~~~---------~~-~~~~~------------~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~-~~~~~~ 456 (488)
.+..+|.... .+ +.... ....+.|+.++ +++|+|+++++.++.++... ..+|++
T Consensus 371 ~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~ 450 (488)
T 3dgz_A 371 EYGCVGLSEEEAVALHGQEHVEVYHAYYKPLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKC 450 (488)
T ss_dssp EEEEEECCHHHHHHHHCGGGEEEEEEECCCHHHHHTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHT
T ss_pred CeEEEeCCHHHHHhhCCCCcEEEEEccccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHC
Confidence 1334444321 01 11100 12467888775 49999999988887776655 445788
Q ss_pred CCCCCh--hhhcCCCcHHHHHHHHHc
Q 011351 457 QPFVDK--AKLQQASSVEEALEIARA 480 (488)
Q Consensus 457 ~~~~~~--~~~~~~~~~~~~~~~~~~ 480 (488)
+.+++. ..++.|||++|++..+..
T Consensus 451 ~~t~~~l~~~~~~hPt~~e~~~~~~~ 476 (488)
T 3dgz_A 451 GASYAQVMQTVGIHPTCSEEVVKLHI 476 (488)
T ss_dssp TCBHHHHHTSCCCSSCSTHHHHTCCE
T ss_pred CCCHHHHhccccCCCChHHHHHHHHH
Confidence 888862 446999999999998753
No 47
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=100.00 E-value=4.4e-40 Score=339.63 Aligned_cols=400 Identities=19% Similarity=0.235 Sum_probs=269.0
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CCCcccc-------------------------C
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-ALTKGYL-------------------------F 102 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~-~l~~~~~-------------------------~ 102 (488)
+.++||+|||||+||++||..|++.|. +|+|||+++..+.... .+-..++ +
T Consensus 30 ~~~~DVvVIGgGpaGl~aA~~la~~G~---~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~ 106 (519)
T 3qfa_A 30 SYDYDLIIIGGGSGGLAAAKEAAQYGK---KVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNY 106 (519)
T ss_dssp SCSEEEEEECCSHHHHHHHHHHHHTTC---CEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCC---eEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhc
Confidence 446899999999999999999999987 8999998652211100 0000000 0
Q ss_pred CCC--C-CCCCCCCcccccC---CCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCc--EEEeccEEeccCCCC
Q 011351 103 PLD--K-KPARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTA 174 (488)
Q Consensus 103 ~~~--~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~--~i~yd~lVlAtG~~~ 174 (488)
... . ...++..+..... ..........++..+++++.+ .+..+++....+...+|+ ++.||+||||||+.|
T Consensus 107 g~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g-~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p 185 (519)
T 3qfa_A 107 GWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENA-YGQFIGPHRIKATNNKGKEKIYSAERFLIATGERP 185 (519)
T ss_dssp TBCCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEE
T ss_pred CcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCc
Confidence 000 0 0000000000000 000000112345679999875 677788776677776664 799999999999988
Q ss_pred CcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHH
Q 011351 175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 254 (488)
Q Consensus 175 ~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~ 254 (488)
.. |+++|... ... +.+.+......+++++|||+|.+|+|+|..|.++|.+|+++++. .+++ .+++++.+.
T Consensus 186 ~~-p~i~G~~~----~~~---t~~~~~~l~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~-~~l~-~~d~~~~~~ 255 (519)
T 3qfa_A 186 RY-LGIPGDKE----YCI---SSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLR-GFDQDMANK 255 (519)
T ss_dssp CC-CCCTTHHH----HCB---CHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSST-TSCHHHHHH
T ss_pred CC-CCCCCccC----ceE---cHHHHhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc-cccc-cCCHHHHHH
Confidence 63 44444211 111 23333333346788999999999999999999999999999985 6666 479999999
Q ss_pred HHHHHHHcCcEEEcCCeEEEEEeCCC---CcE-EEEEeCCC-c--EEEcCEEEEeecCccCChh--hhhcCCccc--CCC
Q 011351 255 YEQLYQQNGVKFVKGASIKNLEAGSD---GRV-AAVKLEDG-S--TIDADTIVIGIGAKPTVSP--FERVGLNSS--VGG 323 (488)
Q Consensus 255 ~~~~l~~~GV~v~~~~~v~~i~~~~~---~~v-~~v~l~~g-~--~i~~D~vi~a~G~~p~~~~--~~~~gl~~~--~g~ 323 (488)
+.+.+++.||++++++.+++++..++ +.+ ..+...+| + ++++|.|++|+|++|++++ ++.+|++.+ +|+
T Consensus 256 ~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~ 335 (519)
T 3qfa_A 256 IGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGK 335 (519)
T ss_dssp HHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCC
T ss_pred HHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCe
Confidence 99999999999999988888765322 322 22334555 2 5789999999999999886 678888875 578
Q ss_pred EEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeEeccccCCCCcc
Q 011351 324 IQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRK 401 (488)
Q Consensus 324 i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~ 401 (488)
|.||+++||+.|||||+|||+... ...+..|..||+.+|+||++.... .+..+|+ ....+..
T Consensus 336 I~Vd~~~~Ts~~~IyA~GD~~~g~---------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~p~----- 399 (519)
T 3qfa_A 336 IPVTDEEQTNVPYIYAIGDILEDK---------VELTPVAIQAGRLLAQRLYAGSTVKCDYENVPT--TVFTPLE----- 399 (519)
T ss_dssp BCCCTTSBCSSTTEEECGGGBSSS---------CCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCE--EECSSSC-----
T ss_pred EeeCCCCccCCCCEEEEEeccCCC---------CccHHHHHHHHHHHHHHHcCCCCccCCCCcCcE--EEECCCc-----
Confidence 999999999999999999999421 125667899999999999975433 3444554 2222221
Q ss_pred eeeEEeeCCCC---------cEEE-Ec------------cCCCcEEEEEEE---CCEEEEEEeecCChHHhhHH-HHHHh
Q 011351 402 VWWQFFGDNVG---------ETIE-IG------------NFDPKIATFWID---SGKLKGVLVESGSPEEFQLL-PTLAR 455 (488)
Q Consensus 402 ~~~~~~g~~~~---------~~~~-~~------------~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~-~~~~~ 455 (488)
+..+|.... .+.. .. .....+.|+.++ +++|+|+++++.++.++... ..+|+
T Consensus 400 --~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~ilGa~i~g~~a~e~i~~~~~ai~ 477 (519)
T 3qfa_A 400 --YGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALK 477 (519)
T ss_dssp --EEEEECCHHHHHHHHCGGGEEEEEEEECCHHHHTTTCCTTTEEEEEEEETTTTCEEEEEEEESTTHHHHHHHHHHHHH
T ss_pred --eEEecCCHHHHHhhCCCCCEEEEEEeccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHH
Confidence 344554321 1111 00 012457888775 48999999988877776644 45678
Q ss_pred cCCCCCh--hhhcCCCcHHHHHHHHHc
Q 011351 456 SQPFVDK--AKLQQASSVEEALEIARA 480 (488)
Q Consensus 456 ~~~~~~~--~~~~~~~~~~~~~~~~~~ 480 (488)
++.+++. ..++.|||++|++..+..
T Consensus 478 ~~~t~~~l~~~~~~hPt~~E~~~~~~~ 504 (519)
T 3qfa_A 478 CGLTKKQLDSTIGIHPVCAEVFTTLSV 504 (519)
T ss_dssp TTCBHHHHHHSCCCTTCGGGGGGGCCC
T ss_pred CCCCHHHHhccccCCCChHHHHHHHHh
Confidence 8888862 446999999999987653
No 48
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=100.00 E-value=5.2e-41 Score=344.42 Aligned_cols=398 Identities=20% Similarity=0.220 Sum_probs=270.2
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCCCCCC------c----------------c
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-------YERPALT------K----------------G 99 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~-------~~~~~l~------~----------------~ 99 (488)
+.++||+|||||+||++||..|++.|. +|+|||+....+ +....+. + .
T Consensus 7 ~~~~DvvVIGgG~aGl~aA~~la~~G~---~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~ 83 (483)
T 3dgh_A 7 SYDYDLIVIGGGSAGLACAKEAVLNGA---RVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAA 83 (483)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHHTTC---CEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCC---EEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHh
Confidence 356899999999999999999999987 899999532111 0000000 0 0
Q ss_pred ccCCCCC-CCCCCCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCc-EEEeccEEeccCCCC
Q 011351 100 YLFPLDK-KPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTA 174 (488)
Q Consensus 100 ~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~-~i~yd~lVlAtG~~~ 174 (488)
+-..... ...++..+.... ...........++..+++++.+ .+.-+++....+.+.+|+ ++.||+||||||+.|
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~g~~~~~~d~lviATGs~p 162 (483)
T 3dgh_A 84 YGWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYING-LGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRP 162 (483)
T ss_dssp TTBCCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCEEEEEEEEEECCCEEE
T ss_pred cCcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEccCCEEEEEeCCCeEEEEcCEEEEeCCCCc
Confidence 0000000 000000000000 0000000112345678998875 666677666667777774 799999999999988
Q ss_pred CcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHH
Q 011351 175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 254 (488)
Q Consensus 175 ~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~ 254 (488)
.. |+++|.+.. .. +++.+......+++++|||+|.+|+|+|..|.++|.+|+++++. .+++ .+++++.+.
T Consensus 163 ~~-p~i~G~~~~----~~---~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~-~~d~~~~~~ 232 (483)
T 3dgh_A 163 RY-PDIPGAVEY----GI---TSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS-IVLR-GFDQQMAEL 232 (483)
T ss_dssp CC-CSSTTHHHH----CB---CHHHHTTCSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-CSST-TSCHHHHHH
T ss_pred CC-CCCCCcccc----cC---cHHHHhhhhhcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCC-CCCc-ccCHHHHHH
Confidence 63 454442111 11 23333333346789999999999999999999999999999984 5665 479999999
Q ss_pred HHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc-----EEEcCEEEEeecCccCChhh--hhcCCcccCCCEEeC
Q 011351 255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVD 327 (488)
Q Consensus 255 ~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~-----~i~~D~vi~a~G~~p~~~~~--~~~gl~~~~g~i~vd 327 (488)
+.+.+++.||++++++.+++++..+++.+ .+.+.+++ ++++|.|++|+|++|+++++ +..|++.++|+|.||
T Consensus 233 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~G~i~vd 311 (483)
T 3dgh_A 233 VAASMEERGIPFLRKTVPLSVEKQDDGKL-LVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPVD 311 (483)
T ss_dssp HHHHHHHTTCCEEETEEEEEEEECTTSCE-EEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBTTBBCCC
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCCcE-EEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccCCEEEEC
Confidence 99999999999999999999986545544 46665543 79999999999999999886 788988877889999
Q ss_pred CCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeEeccccCCCCcceeeE
Q 011351 328 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQ 405 (488)
Q Consensus 328 ~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~ 405 (488)
++++|+.|||||+|||+... ...+..|..||+.+|+||++.... .+..+|+.. |..+ .+.
T Consensus 312 ~~~~t~~~~IyA~GD~~~~~---------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~---~~~p------~~a 373 (483)
T 3dgh_A 312 SQEATNVANIYAVGDIIYGK---------PELTPVAVLAGRLLARRLYGGSTQRMDYKDVATTV---FTPL------EYA 373 (483)
T ss_dssp TTCBCSSTTEEECSTTBTTS---------CCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEE---CSSS------EEE
T ss_pred cCCccCCCCEEEEEcccCCC---------CccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEE---ECCC------ccE
Confidence 99999999999999998421 125567999999999999975433 355566532 2211 133
Q ss_pred EeeCCCC---------cEE-EEc------------cCCCcEEEEEEE---CCEEEEEEeecCChHHhhHH-HHHHhcCCC
Q 011351 406 FFGDNVG---------ETI-EIG------------NFDPKIATFWID---SGKLKGVLVESGSPEEFQLL-PTLARSQPF 459 (488)
Q Consensus 406 ~~g~~~~---------~~~-~~~------------~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~ 459 (488)
.+|.... .+. ... .....+.|+.++ +++|+|+++++.++.++... ..+|+++.+
T Consensus 374 ~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t 453 (483)
T 3dgh_A 374 CVGLSEEDAVKQFGADEIEVFHGYYKPTEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLT 453 (483)
T ss_dssp EEECCHHHHHHHHCGGGEEEEEEECCCGGGTTTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCB
T ss_pred EEeCCHHHHHhhCCCCCEEEEEEeecchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCC
Confidence 3443321 011 100 012347887764 48999999988887776655 445788888
Q ss_pred CC-h-hhhcCCCcHHHHHHHHH
Q 011351 460 VD-K-AKLQQASSVEEALEIAR 479 (488)
Q Consensus 460 ~~-~-~~~~~~~~~~~~~~~~~ 479 (488)
++ . ..++.|||++|++..+.
T Consensus 454 ~~~l~~~~~~hPt~~e~~~~~~ 475 (483)
T 3dgh_A 454 INTLINTVGIHPTTAEEFTRLA 475 (483)
T ss_dssp HHHHHTSCCCSSCSGGGGGGCC
T ss_pred HHHHhhcccCCCChHHHHHHHH
Confidence 76 2 44689999999998765
No 49
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=100.00 E-value=6e-41 Score=343.49 Aligned_cols=298 Identities=21% Similarity=0.279 Sum_probs=226.9
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCH
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (488)
.+++++|||||||+||+++|..|++.++ +|||||+++++.|. |.|+. .... ...+..+ .....
T Consensus 39 ~~~KprVVIIGgG~AGl~~A~~L~~~~~---~VtLId~~~~~~~~-PlL~~-va~G-~l~~~~i-----------~~p~~ 101 (502)
T 4g6h_A 39 HSDKPNVLILGSGWGAISFLKHIDTKKY---NVSIISPRSYFLFT-PLLPS-APVG-TVDEKSI-----------IEPIV 101 (502)
T ss_dssp SCSSCEEEEECSSHHHHHHHHHSCTTTC---EEEEEESSSEEECG-GGGGG-TTTT-SSCGGGG-----------EEEHH
T ss_pred CCCCCCEEEECCcHHHHHHHHHhhhCCC---cEEEECCCCCcccc-cchhH-Hhhc-cccHHHh-----------hhhHH
Confidence 4567899999999999999999988765 89999999988775 55432 1111 0000000 00111
Q ss_pred hHH--HHCCCeEEeCCcEEEEeCCCcEEEeC--------------------CCcEEEeccEEeccCCCCCcCCCCCCCCC
Q 011351 128 EWY--KEKGIEMIYQDPVTSIDIEKQTLITN--------------------SGKLLKYGSLIVATGCTASRFPEKIGGYL 185 (488)
Q Consensus 128 ~~~--~~~~i~~~~~~~v~~id~~~~~v~~~--------------------~g~~i~yd~lVlAtG~~~~~~~~~~g~~~ 185 (488)
... .+.+++++. .+|++||+++++|++. ++.++.||+||||||+.+.. +.+||..
T Consensus 102 ~~~~~~~~~v~~~~-~~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~-~~ipG~~- 178 (502)
T 4g6h_A 102 NFALKKKGNVTYYE-AEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNT-FGIPGVT- 178 (502)
T ss_dssp HHHTTCSSCEEEEE-EEEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECC-TTCTTHH-
T ss_pred HHHHhhcCCeEEEE-EEEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCccccc-CCccCcc-
Confidence 222 235788887 5899999999988763 35679999999999999874 4445532
Q ss_pred CcEEEecCHHHHHHHHHhhh-----------------cCCeEEEECCCHHHHHHHHHHHhCC--------------CcEE
Q 011351 186 PGVHYIRDVADADALISSLE-----------------KAKKVVVVGGGYIGMEVAAAAVGWK--------------LDTT 234 (488)
Q Consensus 186 ~gv~~~~~~~~~~~~~~~~~-----------------~~~~vvVvG~G~~g~e~A~~l~~~g--------------~~v~ 234 (488)
+..+.++++.++..+++.+. ...+++|||+|++|+|+|.+|.+++ .+|+
T Consensus 179 e~a~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~ 258 (502)
T 4g6h_A 179 DYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIH 258 (502)
T ss_dssp HHCEECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEE
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeE
Confidence 33467888888877655431 1247999999999999999987642 5799
Q ss_pred EEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc----EEEcCEEEEeecCccCC-
Q 011351 235 IIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS----TIDADTIVIGIGAKPTV- 309 (488)
Q Consensus 235 lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~----~i~~D~vi~a~G~~p~~- 309 (488)
++++.+++++. +++++++.+++.|+++||+++++++|++++. ++.+....+.||+ ++++|.||||+|.+|+.
T Consensus 259 lve~~~~il~~-~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~--~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~ 335 (502)
T 4g6h_A 259 LVEALPIVLNM-FEKKLSSYAQSHLENTSIKVHLRTAVAKVEE--KQLLAKTKHEDGKITEETIPYGTLIWATGNKARPV 335 (502)
T ss_dssp EECSSSSSSTT-SCHHHHHHHHHHHHHTTCEEETTEEEEEECS--SEEEEEEECTTSCEEEEEEECSEEEECCCEECCHH
T ss_pred EeccccccccC-CCHHHHHHHHHHHHhcceeeecCceEEEEeC--CceEEEEEecCcccceeeeccCEEEEccCCcCCHH
Confidence 99999999985 8999999999999999999999999999973 3444455666764 69999999999999983
Q ss_pred --hhhhhcCCccc-CCCEEeCCCCCC-CCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351 310 --SPFERVGLNSS-VGGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 310 --~~~~~~gl~~~-~g~i~vd~~~~t-~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
++....++..+ +|+|.||++||+ ++|||||+|||+..+.++ ..+.|.+||+.+|+||.+
T Consensus 336 ~~~l~~~~~~~~~~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~~p~--------~a~~A~qqg~~~A~ni~~ 398 (502)
T 4g6h_A 336 ITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLPP--------TAQVAHQEAEYLAKNFDK 398 (502)
T ss_dssp HHHHHHHSGGGTTCCSSEEBCTTSBBTTCSSEEECGGGEESSSCC--------CHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHhccccccCCCceeECCccccCCCCCEEEEEcccCCCCCC--------chHHHHHHHHHHHHHHHH
Confidence 23445565544 688999999999 899999999999876543 566799999999999954
No 50
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=100.00 E-value=6.8e-40 Score=336.47 Aligned_cols=399 Identities=17% Similarity=0.209 Sum_probs=251.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-CCCCC-----------ccccCCC-----CCCCCCCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-RPALT-----------KGYLFPL-----DKKPARLPG 113 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~-~~~l~-----------~~~~~~~-----~~~~~~~~~ 113 (488)
.+|++|||||+||++||..+++.|. +|+|||+.....+. +..+- |.++... ........+
T Consensus 42 dYDviVIG~GpaG~~aA~~aa~~G~---kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~G 118 (542)
T 4b1b_A 42 DYDYVVIGGGPGGMASAKEAAAHGA---RVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYG 118 (542)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTC---CEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGT
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcC
Confidence 4799999999999999999999987 89999976532211 01110 0000000 000000000
Q ss_pred cccc-cCCCC--------------CCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeC----CCcEEEeccEEeccCCCC
Q 011351 114 FHTC-VGSGG--------------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN----SGKLLKYGSLIVATGCTA 174 (488)
Q Consensus 114 ~~~~-~~~~~--------------~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~----~g~~i~yd~lVlAtG~~~ 174 (488)
+... ...++ .......+++.+++++.+ ...-+++..-.|... +++.+.+|++|||||++|
T Consensus 119 i~~~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G-~a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs~P 197 (542)
T 4b1b_A 119 WKFDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYING-LAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGCRP 197 (542)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECE-EEEEEETTEEEEEEC--CCCEEEEEEEEEEECCCEEE
T ss_pred cccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEee-eEEEcCCCcceEeecccCCceEEEeeeeEEeccCCCC
Confidence 0000 00000 000123356678998875 444444433333332 335799999999999998
Q ss_pred CcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHH
Q 011351 175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 254 (488)
Q Consensus 175 ~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~ 254 (488)
..+|..++ ....+ .+++.+++....+++++|||+|++|+|+|..++++|.+||++.+. ++++. +++++.+.
T Consensus 198 ~~P~~~~~-~~~~~------~ts~~~l~l~~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~-~~L~~-~D~ei~~~ 268 (542)
T 4b1b_A 198 HIPDDVEG-AKELS------ITSDDIFSLKKDPGKTLVVGASYVALECSGFLNSLGYDVTVAVRS-IVLRG-FDQQCAVK 268 (542)
T ss_dssp CCCSSSBT-HHHHC------BCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESS-CSSTT-SCHHHHHH
T ss_pred CCCCcccC-CCccc------cCchhhhccccCCceEEEECCCHHHHHHHHHHHhcCCeEEEeccc-ccccc-cchhHHHH
Confidence 75433221 11111 135556665567899999999999999999999999999999874 66764 79999999
Q ss_pred HHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCC-EEeCCCC
Q 011351 255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGG-IQVDGQF 330 (488)
Q Consensus 255 ~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~-i~vd~~~ 330 (488)
+.+.|++.||+++++..+++++..+ +. ..+.+.+++++.+|.|++|+|++||++. ++..++..+ +++ +.+|+++
T Consensus 269 l~~~l~~~gi~~~~~~~v~~~~~~~-~~-~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~ 346 (542)
T 4b1b_A 269 VKLYMEEQGVMFKNGILPKKLTKMD-DK-ILVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLS 346 (542)
T ss_dssp HHHHHHHTTCEEEETCCEEEEEEET-TE-EEEEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTTS
T ss_pred HHHHHHhhcceeecceEEEEEEecC-Ce-EEEEEcCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEeccccc
Confidence 9999999999999999999998653 33 3578889999999999999999999986 456777765 344 5789999
Q ss_pred CCCCCCEEEEceeccc-CCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeEeccccCCCCcceeeEEe
Q 011351 331 RTRMPGIFAIGDVAAF-PLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFF 407 (488)
Q Consensus 331 ~t~~~~Ifa~GD~a~~-~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~ 407 (488)
||++|||||+|||+.. |. ....|..+|+.++.++++.... .|..+|+. .|..+- +..+
T Consensus 347 ~Ts~p~IyAiGDv~~~~p~----------La~~A~~eg~~aa~~i~g~~~~~~d~~~iP~~---vft~Pe------iA~V 407 (542)
T 4b1b_A 347 CTNIPSIFAVGDVAENVPE----------LAPVAIKAGEILARRLFKDSDEIMDYSYIPTS---IYTPIE------YGAC 407 (542)
T ss_dssp BCSSTTEEECTTSBTTCCC----------CHHHHHHHHHHHHHHHHSCCCCCCCCSSCCEE---ECSSSC------EEEE
T ss_pred cccCCCeEEeccccCCchh----------HHHHHHHHHHHHHHHHhcCCCcccCCCCCceE---EeCCCC------eEEE
Confidence 9999999999999963 22 3345889999999999985543 45567753 333221 2233
Q ss_pred eCCCCc---------E-EE--------------------------EccCCCcEEEEEE-E--CCEEEEEEeecCChHHhh
Q 011351 408 GDNVGE---------T-IE--------------------------IGNFDPKIATFWI-D--SGKLKGVLVESGSPEEFQ 448 (488)
Q Consensus 408 g~~~~~---------~-~~--------------------------~~~~~~~~~~~~~-~--~~~~~g~~~~~~~~~~~~ 448 (488)
|....+ + +. .......|.++.. + +++|+|+++++.++.++.
T Consensus 408 GlTE~eA~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vKli~~~~~t~~ILGa~ivG~~A~ElI 487 (542)
T 4b1b_A 408 GYSEEKAYELYGKSNVEVFLQEFNNLEISAVHRQKHIRAQKDEYDLDVSSTCLAKLVCLKNEDNRVIGFHYVGPNAGEVT 487 (542)
T ss_dssp ECCHHHHHHHHCTTTEEEEEC-----------------------------CCCEEEEEETTTTTBEEEEEEESTTHHHHH
T ss_pred eCCHHHHHHhCCCCcEEEEEeeccchhhhhhhhhhhhhcccccccccCCCceEEEEEEEeCCCCEEEEEEEECCCHHHHH
Confidence 322110 0 00 0001134566654 3 589999999888888877
Q ss_pred HHHH-HHhcCCCCC--hhhhcCCCcHHHHHHHHHccCC
Q 011351 449 LLPT-LARSQPFVD--KAKLQQASSVEEALEIARAALP 483 (488)
Q Consensus 449 ~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 483 (488)
+.-. +|+.+.+++ ...++.|||++|++.++..++.
T Consensus 488 ~~~alAi~~~~t~~dl~~~i~~HPTlsE~l~~~~~t~~ 525 (542)
T 4b1b_A 488 QGMALALRLKVKKKDFDNCIGIHPTDAESFMNLFVTIS 525 (542)
T ss_dssp HHHHHHHHTCCBHHHHHHC-------------------
T ss_pred HHHHHHHHcCCCHHHHhccCCcCCCHHHHHHHHHHHHH
Confidence 6655 468888876 2446999999999999877653
No 51
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=100.00 E-value=1.6e-38 Score=334.35 Aligned_cols=398 Identities=17% Similarity=0.229 Sum_probs=264.5
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CCCccc----------c---------------C
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-ALTKGY----------L---------------F 102 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~-~l~~~~----------~---------------~ 102 (488)
..++||+|||||+||++||..|++.|. +|+|||+....+.... .+...+ + +
T Consensus 105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~---~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~ 181 (598)
T 2x8g_A 105 KYDYDLIVIGGGSGGLAAGKEAAKYGA---KTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHF 181 (598)
T ss_dssp SSSEEEEEECCSHHHHHHHHHHHHTTC---CEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccEEEECCCccHHHHHHHHHhCCC---eEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhC
Confidence 446899999999999999999999987 8999997422111100 000000 0 0
Q ss_pred CCCCCCCC-C-CCcccccCCCCCC--------CCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCC--cEEEeccEEecc
Q 011351 103 PLDKKPAR-L-PGFHTCVGSGGER--------QTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVAT 170 (488)
Q Consensus 103 ~~~~~~~~-~-~~~~~~~~~~~~~--------~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~i~yd~lVlAt 170 (488)
... .+.. . ..+.... .+.. .....+...+++++.+ .+..++.....+...+| .++.||+|||||
T Consensus 182 g~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~~~~~~~v~v~~~~g~~~~~~~d~lviAt 257 (598)
T 2x8g_A 182 GWS-LDRSKISHNWSTMV--EGVQSHIGSLNWGYKVALRDNQVTYLNA-KGRLISPHEVQITDKNQKVSTITGNKIILAT 257 (598)
T ss_dssp TCC-CCGGGCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCEEEEEEEEEEECC
T ss_pred Ccc-ccCCcCccCHHHHH--HHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEcCCCEEEEEeCCCCeEEEEeCEEEEeC
Confidence 000 0000 0 0000000 0000 0011234568988864 56667765555555666 468999999999
Q ss_pred CCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHH
Q 011351 171 GCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPS 250 (488)
Q Consensus 171 G~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~ 250 (488)
|+.|+ .|+++|.+. ... +.+.+......+++++|||+|.+|+|+|..|+++|.+|+++++. .+++ .++++
T Consensus 258 Gs~p~-~p~i~G~~~-~~~------~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~-~~d~~ 327 (598)
T 2x8g_A 258 GERPK-YPEIPGAVE-YGI------TSDDLFSLPYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILLR-GFDQQ 327 (598)
T ss_dssp CEEEC-CCSSTTHHH-HCE------EHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSST-TSCHH
T ss_pred CCCCC-CCCCCCccc-ceE------cHHHHhhCccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCcC-cCCHH
Confidence 99876 344444211 011 12333332345789999999999999999999999999999998 6665 47899
Q ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEeC-----CC---CcE-EEEEeCCCcEEE--cCEEEEeecCccCChh--hhhcCC
Q 011351 251 LAQRYEQLYQQNGVKFVKGASIKNLEAG-----SD---GRV-AAVKLEDGSTID--ADTIVIGIGAKPTVSP--FERVGL 317 (488)
Q Consensus 251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~-----~~---~~v-~~v~l~~g~~i~--~D~vi~a~G~~p~~~~--~~~~gl 317 (488)
+.+.+.+.+++.||++++++.++++... ++ +.+ ..+.+.+|++++ +|.|++|+|++|++++ ++..|+
T Consensus 328 ~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl 407 (598)
T 2x8g_A 328 MAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGV 407 (598)
T ss_dssp HHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBCGGGCC
T ss_pred HHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCchhcCc
Confidence 9999999999999999999988888532 11 333 123456787665 9999999999999887 577888
Q ss_pred ccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeEeccc
Q 011351 318 NSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFE 394 (488)
Q Consensus 318 ~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~--~~~~~~p~~~~~~~~ 394 (488)
+.+ +|+|.||++++|+.|+|||+|||+... ...+..|..+|+.+|.+|++... ..|..+|+.+ |.
T Consensus 408 ~~~~~G~i~vd~~~~ts~~~VyA~GD~~~~~---------~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~~---~~ 475 (598)
T 2x8g_A 408 KLDKNGRVVCTDDEQTTVSNVYAIGDINAGK---------PQLTPVAIQAGRYLARRLFAGATELTDYSNVATTV---FT 475 (598)
T ss_dssp CBCTTSCBCCCTTSBCSSTTEEECGGGBTTS---------CCCHHHHHHHHHHHHHHHHHCCCCCCCCTTCCEEE---CS
T ss_pred eECCCCcEEeCCCCcCCCCCEEEEeeecCCC---------CccHHHHHHhHHHHHHHHhcCCCcccCCCCCcEEE---EC
Confidence 875 577999999999999999999996531 12566799999999999997543 2355566532 22
Q ss_pred cCCCCcceeeEEeeCCCC---------cEEEE------------c-cCCCcEEEEEEE---CCEEEEEEeecCChHHhhH
Q 011351 395 YEGSPRKVWWQFFGDNVG---------ETIEI------------G-NFDPKIATFWID---SGKLKGVLVESGSPEEFQL 449 (488)
Q Consensus 395 ~~g~~~~~~~~~~g~~~~---------~~~~~------------~-~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~ 449 (488)
.+- +..+|.... .+... + .....+.++.++ +++|+|+++++.++.++..
T Consensus 476 ~~~------~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~~ilG~~~~g~~a~~~i~ 549 (598)
T 2x8g_A 476 PLE------YGACGLSEEDAIEKYGDKDIEVYHSNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQ 549 (598)
T ss_dssp SSC------EEEEECCHHHHHHHHCGGGEEEEEEEECCTHHHHTTCCSSCEEEEEEEETTTTTEEEEEEEESTTHHHHHH
T ss_pred CCc------eEEEeCCHHHHHhhCCCCcEEEEEEeccchhHHhhcCCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHH
Confidence 110 333443211 01110 0 112357788775 6999999987777776665
Q ss_pred H-HHHHhcCCCCC--hhhhcCCCcHHHHHHHHHcc
Q 011351 450 L-PTLARSQPFVD--KAKLQQASSVEEALEIARAA 481 (488)
Q Consensus 450 ~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 481 (488)
. ..+|+++.+++ ...++.|||++|++..++..
T Consensus 550 ~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~ 584 (598)
T 2x8g_A 550 GYAVAIKMGATKADFDRTIGIHPTCSETFTTLHVT 584 (598)
T ss_dssp HHHHHHHTTCBHHHHHHSCCCSSCSGGGGGSCCCB
T ss_pred HHHHHHHcCCCHHHHhhccccCCCHHHHHHHHHHh
Confidence 4 45578888776 24469999999999888753
No 52
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=100.00 E-value=3.5e-39 Score=326.19 Aligned_cols=330 Identities=18% Similarity=0.168 Sum_probs=233.8
Q ss_pred cccccccceeeccccC--CCCcccceec---ccccccccccccccc------cc---ccCCCCCeEEEEcCchHHHHHHH
Q 011351 3 SVSNSLSFKHGLSLWC--PQSPSLHRIR---HSSAKNFQRRGFVVA------YS---SFANENREFVIVGGGNAAGYAAR 68 (488)
Q Consensus 3 ~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~------~~---~~~~~~~~vvIIGgG~AGl~aA~ 68 (488)
..+|||+.+||++|.+ +|+.+|.+.. .++++....++..+. .. +.....++|+|||||+||+++|.
T Consensus 60 ~~~n~~p~~~grvCp~~~~Ce~~C~~~~~~~~~v~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~V~IIGgGpAGl~aA~ 139 (456)
T 2vdc_G 60 QATNNFPEICGRICPQDRLCEGNCVIEQSTHGAVTIGSVEKYINDTAWDQGWVKPRTPSRELGLSVGVIGAGPAGLAAAE 139 (456)
T ss_dssp HHHCSCHHHHHHHCCGGGSGGGGCGGGGSSSCSCCHHHHHHHHHHHHHHHTCCCCCCSCSSCCCCEEEECCSHHHHHHHH
T ss_pred HhhCCCCccccccCCCCcchHHhcccCCCCCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCCHHHHHHHH
Confidence 3689999999999999 9999999985 566666655655321 11 11245689999999999999999
Q ss_pred HHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeC
Q 011351 69 TFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDI 148 (488)
Q Consensus 69 ~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~ 148 (488)
.|++.|+ +|+|||+++..... +. +-.+.. +++. ....+..+++++.+++++.++.|.
T Consensus 140 ~L~~~G~---~V~v~e~~~~~GG~---l~--~gip~~----~~~~-------~~~~~~~~~l~~~gv~~~~~~~v~---- 196 (456)
T 2vdc_G 140 ELRAKGY---EVHVYDRYDRMGGL---LV--YGIPGF----KLEK-------SVVERRVKLLADAGVIYHPNFEVG---- 196 (456)
T ss_dssp HHHHHTC---CEEEECSSSSCSTH---HH--HTSCTT----TSCH-------HHHHHHHHHHHHTTCEEETTCCBT----
T ss_pred HHHHCCC---eEEEEeccCCCCCe---ee--ecCCCc----cCCH-------HHHHHHHHHHHHCCcEEEeCCEec----
Confidence 9999987 79999998654210 00 101100 1110 001223466788899999886542
Q ss_pred CCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHH---H---------hhhcCCeEEEECCC
Q 011351 149 EKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI---S---------SLEKAKKVVVVGGG 216 (488)
Q Consensus 149 ~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~---~---------~~~~~~~vvVvG~G 216 (488)
+.++++++. +.||+||||||+.....+.++|.+.+++++..++....... . ....+++|+|||+|
T Consensus 197 --~~v~~~~~~-~~~d~vvlAtG~~~~~~~~ipG~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG 273 (456)
T 2vdc_G 197 --RDASLPELR-RKHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGG 273 (456)
T ss_dssp --TTBCHHHHH-SSCSEEEECCCCCEECCTTCSCCTTTTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSS
T ss_pred --cEEEhhHhH-hhCCEEEEecCCCCCCCCCCCCCcCCCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCC
Confidence 223333332 57999999999974334567777778887643332221111 0 01357899999999
Q ss_pred HHHHHHHHHHHhCCC-cEEEEecCCcC-cccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe------
Q 011351 217 YIGMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL------ 288 (488)
Q Consensus 217 ~~g~e~A~~l~~~g~-~v~lv~~~~~~-l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l------ 288 (488)
.+|+|+|..+.+.|. +|++++|++.+ ++. .+.+ .+.+++.||++++++.++++.. ++++.++.+
T Consensus 274 ~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~-~~~e-----~~~~~~~Gv~~~~~~~~~~i~~--~g~v~~v~~~~~~~~ 345 (456)
T 2vdc_G 274 DTAMDCVRTAIRQGATSVKCLYRRDRKNMPG-SQRE-----VAHAEEEGVEFIWQAAPEGFTG--DTVVTGVRAVRIHLG 345 (456)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECSSCSTTCSS-CHHH-----HHHHHHTTCEEECCSSSCCEEE--EEEEETTEEEEEEEE
T ss_pred hhHHHHHHHHHHcCCCEEEEEEeCCccCCCC-CHHH-----HHHHHHCCCEEEeCCCceEEeC--CCcEEEEEEEEEEec
Confidence 999999999999987 49999998876 543 2222 2457788999999999998874 333322222
Q ss_pred ---C---------CC--cEEEcCEEEEeecCccCCh--hhhhcCCccc-CCCEEeCCC-CCCCCCCEEEEceecccCCcc
Q 011351 289 ---E---------DG--STIDADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKM 350 (488)
Q Consensus 289 ---~---------~g--~~i~~D~vi~a~G~~p~~~--~~~~~gl~~~-~g~i~vd~~-~~t~~~~Ifa~GD~a~~~~~~ 350 (488)
. +| +++++|.||+|+|+.|+.. +++++++..+ +|+|.||++ ++|+.|+|||+|||+..+.
T Consensus 346 ~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~~~~Ts~~~VfA~GD~~~g~~-- 423 (456)
T 2vdc_G 346 VADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRGAS-- 423 (456)
T ss_dssp EEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHSTTSCBCTTSSBCCCTTTCBCSSTTEEECGGGGSSCC--
T ss_pred ccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhcccCCeeECCCCCEEECCCCCcCCCCCEEEeccccCCch--
Confidence 1 23 4699999999999999876 7888888865 688999997 9999999999999997543
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhc
Q 011351 351 YDRTARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 351 ~~~~~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
.+..|..+|+.+|++|..
T Consensus 424 --------~v~~A~~~G~~aA~~i~~ 441 (456)
T 2vdc_G 424 --------LVVWAIRDGRDAAEGIHA 441 (456)
T ss_dssp --------SHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHH
Confidence 456688889998888864
No 53
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=100.00 E-value=7.9e-38 Score=305.95 Aligned_cols=298 Identities=18% Similarity=0.249 Sum_probs=219.4
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (488)
+++++|+|||||+||+++|..|++.|+ +|+|||+++....... ...+ .......+++.............+
T Consensus 3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~gg~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~l~~ 73 (335)
T 2zbw_A 3 ADHTDVLIVGAGPTGLFAGFYVGMRGL---SFRFVDPLPEPGGQLT-----ALYP-EKYIYDVAGFPKVYAKDLVKGLVE 73 (335)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSCHHHH-----HTCT-TSEECCSTTCSSEEHHHHHHHHHH
T ss_pred CCcCcEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCCCCCCeee-----ccCC-CceeeccCCCCCCCHHHHHHHHHH
Confidence 446899999999999999999999887 8999999875421100 0000 000011111111000001112234
Q ss_pred HHHHCCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCCC---CCcCCCCCCCCC---CcEEE-ecCHHHHHH
Q 011351 129 WYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCT---ASRFPEKIGGYL---PGVHY-IRDVADADA 199 (488)
Q Consensus 129 ~~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~~---~~~~~~~~g~~~---~gv~~-~~~~~~~~~ 199 (488)
.+++.+++++.+++|+.++.+. ..|.+.+++++.||+||+|||+. +. .+.++|... .++++ +++..
T Consensus 74 ~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~-~~~i~g~~~~~~~~~~~~~~~~~---- 148 (335)
T 2zbw_A 74 QVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPR-RIGAPGEREFEGRGVYYAVKSKA---- 148 (335)
T ss_dssp HHGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEEC-CCCCTTTTTTBTTTEESSCSCGG----
T ss_pred HHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCC-CCCCCChhhccCcEEEEecCchh----
Confidence 4556789998899999998765 35777788889999999999984 43 233444321 12321 11111
Q ss_pred HHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCC
Q 011351 200 LISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS 279 (488)
Q Consensus 200 ~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~ 279 (488)
...+++++|||+|.+|+|+|..|.+.+.+|+++++.+.+++ .+...+.+.+.+++.||++++++.+++++.
T Consensus 149 ----~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~---~~~~~~~l~~~l~~~gv~v~~~~~v~~i~~-- 219 (335)
T 2zbw_A 149 ----EFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA---HEASVKELMKAHEEGRLEVLTPYELRRVEG-- 219 (335)
T ss_dssp ----GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS---CHHHHHHHHHHHHTTSSEEETTEEEEEEEE--
T ss_pred ----hcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc---cHHHHHHHHhccccCCeEEecCCcceeEcc--
Confidence 12579999999999999999999999999999999988765 356778888889999999999999999986
Q ss_pred CCcEEEEEeC---CC--cEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcc
Q 011351 280 DGRVAAVKLE---DG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT 354 (488)
Q Consensus 280 ~~~v~~v~l~---~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~ 354 (488)
++.+..+.+. +| +++++|.||+|+|++|+.++++++++..++|++.||++++|+.|||||+|||+..+..
T Consensus 220 ~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~----- 294 (335)
T 2zbw_A 220 DERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLALEKNKIKVDTTMATSIPGVYACGDIVTYPGK----- 294 (335)
T ss_dssp SSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGGGGGSCCCEETTEEECCTTCBCSSTTEEECSTTEECTTC-----
T ss_pred CCCeeEEEEEECCCCceEEEecCEEEEeecCCCCchHhhhcceeccCCeeeeCCCCCCCCCCEEEeccccccCcc-----
Confidence 3445566665 67 5799999999999999998999999987788999999999999999999999986532
Q ss_pred cccccHHHHHHHHHHHHHHHhc
Q 011351 355 ARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 355 ~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
...+..|..+|+.+|++|.+
T Consensus 295 --~~~~~~A~~~g~~aa~~i~~ 314 (335)
T 2zbw_A 295 --LPLIVLGFGEAAIAANHAAA 314 (335)
T ss_dssp --CCCHHHHHHHHHHHHHHHHH
T ss_pred --hhhhhhhHHHHHHHHHHHHH
Confidence 22567788999999999875
No 54
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=100.00 E-value=8.7e-38 Score=308.77 Aligned_cols=299 Identities=22% Similarity=0.335 Sum_probs=219.6
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (488)
++++||+|||||+||+++|..|++.|+ +|+|||+++....... ...+ .......+++...........+.+
T Consensus 12 ~~~~dvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~gg~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~l~~ 82 (360)
T 3ab1_A 12 HDMRDLTIIGGGPTGIFAAFQCGMNNI---SCRIIESMPQLGGQLA-----ALYP-EKHIYDVAGFPEVPAIDLVESLWA 82 (360)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHH-----HTCT-TSEECCSTTCSSEEHHHHHHHHHH
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCCCccc-----ccCC-CcccccCCCCCCCCHHHHHHHHHH
Confidence 346899999999999999999999887 8999999865421100 0000 000011111111000001112234
Q ss_pred HHHHCCCeEEeCCcEEEEeCCCc---EEEeCCCcEEEeccEEeccCCC---CCcCCCCCC-C-CCC--cEEE-ecCHHHH
Q 011351 129 WYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCT---ASRFPEKIG-G-YLP--GVHY-IRDVADA 197 (488)
Q Consensus 129 ~~~~~~i~~~~~~~v~~id~~~~---~v~~~~g~~i~yd~lVlAtG~~---~~~~~~~~g-~-~~~--gv~~-~~~~~~~ 197 (488)
.+++.+++++.+++|+.++.... .|++.+|+.+.||+||+|||+. +. .+.+++ . ... ++++ +++..
T Consensus 83 ~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~-~~~i~g~~~~~~~~~v~~~~~~~~-- 159 (360)
T 3ab1_A 83 QAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPR-KLPQLGNIDHLTGSSVYYAVKSVE-- 159 (360)
T ss_dssp HHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBC-CCGGGCCCTTTBTTTEESSCSCGG--
T ss_pred HHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCC-CCCCCCchhhCcCceEEEecCCHH--
Confidence 45567899998889999987643 7888888889999999999984 33 233444 2 122 2322 12211
Q ss_pred HHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351 198 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (488)
Q Consensus 198 ~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 277 (488)
...+++++|||+|.+|+|+|..|.+.+.+|+++++.+.+.+. +...+.+.+.+++.||++++++++++++.
T Consensus 160 ------~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~---~~~~~~l~~~~~~~gv~i~~~~~v~~i~~ 230 (360)
T 3ab1_A 160 ------DFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGH---GKTAHEVERARANGTIDVYLETEVASIEE 230 (360)
T ss_dssp ------GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSC---SHHHHSSHHHHHHTSEEEESSEEEEEEEE
T ss_pred ------HcCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCC---HHHHHHHHHHhhcCceEEEcCcCHHHhcc
Confidence 125799999999999999999999999999999999877652 45677788888899999999999999986
Q ss_pred CCCCcEEEEEeC--CC--cEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCc
Q 011351 278 GSDGRVAAVKLE--DG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 353 (488)
Q Consensus 278 ~~~~~v~~v~l~--~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~ 353 (488)
+ ++++..|.+. +| +++++|.||+|+|++|+.++++.+++..++|+|.||++++|+.|+|||+|||+..+..
T Consensus 231 ~-~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~---- 305 (360)
T 3ab1_A 231 S-NGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENALVVDSHMKTSVDGLYAAGDIAYYPGK---- 305 (360)
T ss_dssp E-TTEEEEEEEEETTCCEEEEECSEEEECCCBCCSCGGGGGSSCCEETTEEECCTTSBCSSTTEEECSTTEECTTC----
T ss_pred C-CCceEEEEEEecCCCeEEEeCCEEEECCCCCCCHHHHHhhccccccCeeeecCCCcCCCCCEEEecCccCCCCc----
Confidence 4 4555566664 77 5799999999999999999999999887788999999999999999999999986532
Q ss_pred ccccccHHHHHHHHHHHHHHHhc
Q 011351 354 TARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 354 ~~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
...+..|..+|..+|++|.+
T Consensus 306 ---~~~~~~A~~~g~~aa~~i~~ 325 (360)
T 3ab1_A 306 ---LKIIQTGLSEATMAVRHSLS 325 (360)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHH
T ss_pred ---cceeehhHHHHHHHHHHHHh
Confidence 22567789999999999875
No 55
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=100.00 E-value=4e-37 Score=297.87 Aligned_cols=294 Identities=22% Similarity=0.312 Sum_probs=209.3
Q ss_pred cCCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCC
Q 011351 47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT 126 (488)
Q Consensus 47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (488)
|+.+.+||+||||||||++||.+|++.|+ +|+|||++..- . .++.. . ...++|++....+.+.....
T Consensus 2 Mte~~yDvvIIG~GpAGl~aA~~l~~~g~---~V~liE~~~~g--G------~~~~~-~-~i~~~p~~~~~~~~~~~~~~ 68 (312)
T 4gcm_A 2 MTEIDFDIAIIGAGPAGMTAAVYASRANL---KTVMIERGIPG--G------QMANT-E-EVENFPGFEMITGPDLSTKM 68 (312)
T ss_dssp --CCSEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCTT--G------GGGGC-S-CBCCSTTCSSBCHHHHHHHH
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEecCCCC--C------eeecc-c-ccCCcCCccccchHHHHHHH
Confidence 34457999999999999999999999987 89999986321 1 01100 0 01112222211111111223
Q ss_pred HhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCC---cEEEecCHHHHHHHHHh
Q 011351 127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP---GVHYIRDVADADALISS 203 (488)
Q Consensus 127 ~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~---gv~~~~~~~~~~~~~~~ 203 (488)
..++.+.+..+..+..+...+.....+...+++++.||+||||||+.|+. |++||.+.. ++.+. ......
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~-~~ipG~~~~~~~~v~~~------~~~~~~ 141 (312)
T 4gcm_A 69 FEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKK-IGVPGEQELGGRGVSYC------AVCDGA 141 (312)
T ss_dssp HHHHHHTTCEEEECCCCEEEECSSCEEEECSSCEEEEEEEEECCCEEECC-CCCTTTTTTBTTTEESC------HHHHGG
T ss_pred HHHHhhccccccceeeeeeeeeecceeeccCCeEEEeceeEEcccCccCc-CCCCChhhhCCccEEee------eccCcc
Confidence 44556678888877777777777777777888899999999999998874 556664432 23222 122233
Q ss_pred hhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCc-
Q 011351 204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR- 282 (488)
Q Consensus 204 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~- 282 (488)
...+|+++|||+|++|+|+|..|+++|.+||++++.+++++.. . ...+.+++.++.......+......+...
T Consensus 142 ~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (312)
T 4gcm_A 142 FFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQR---I---LQDRAFKNDKIDFIWSHTLKSINEKDGKVG 215 (312)
T ss_dssp GGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCH---H---HHHHHHHCTTEEEECSEEEEEEEEETTEEE
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCcch---h---HHHHHHHhcCcceeeecceeeeeccccccc
Confidence 4568999999999999999999999999999999999887641 1 22355677889988887777665432211
Q ss_pred -EEEEEe--CCCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCccccccc
Q 011351 283 -VAAVKL--EDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEH 359 (488)
Q Consensus 283 -v~~v~l--~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~ 359 (488)
...... .++..+++|.|++++|..|+..+++..++..++|+|.||+++|||+|||||+|||+..+.. .
T Consensus 216 ~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~~g~~~~~G~I~vd~~~~Ts~pgIyA~GDv~~~~~~---------~ 286 (312)
T 4gcm_A 216 SVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLR---------Q 286 (312)
T ss_dssp EEEEEETTTCCEEEEECSEEEECSCEEESCGGGGGGTCBCTTSCBCCCTTSBCSSTTEEECSTTBSCSCC---------S
T ss_pred cceeeeecCCceeEEeeeeEEeecCCCcCchhHHhcceecCCCeEeeCCCCccCCCCEEEEeecCCCcch---------H
Confidence 111112 2335799999999999999999999999988888999999999999999999999974321 3
Q ss_pred HHHHHHHHHHHHHHHh
Q 011351 360 VDHARQSAQHCIKALL 375 (488)
Q Consensus 360 ~~~A~~~g~~~a~~i~ 375 (488)
+..|..+|+.||.++.
T Consensus 287 ~~~A~~~G~~AA~~i~ 302 (312)
T 4gcm_A 287 IVTATGDGSIAAQSAA 302 (312)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4568888888888875
No 56
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=100.00 E-value=1.4e-37 Score=303.65 Aligned_cols=293 Identities=17% Similarity=0.234 Sum_probs=214.2
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
+++||+|||||+||+++|..|++.|+ +|+|||+++...... . ...+ ......++++.............++
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~gG~~----~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (332)
T 3lzw_A 6 KVYDITIIGGGPVGLFTAFYGGMRQA---SVKIIESLPQLGGQL----S-ALYP-EKYIYDVAGFPKIRAQELINNLKEQ 76 (332)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHH----H-HHCT-TSEECCSTTCSSEEHHHHHHHHHHH
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCC---CEEEEEcCCCCCcee----h-hcCC-CceEeccCCCCCCCHHHHHHHHHHH
Confidence 35799999999999999999999887 899999987543100 0 0000 0000111221111111111223445
Q ss_pred HHHCCCeEEeCCcEEEEeCCCc---EEEeCCCcEEEeccEEeccCC---CCCcCCCCCCCCC---CcEEEecCHHHHHHH
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGC---TASRFPEKIGGYL---PGVHYIRDVADADAL 200 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~---~v~~~~g~~i~yd~lVlAtG~---~~~~~~~~~g~~~---~gv~~~~~~~~~~~~ 200 (488)
+++.+++++++++|++++...+ .+.+.+++ +.||+||+|||+ .+. .+.+++... ..+++ ...+..
T Consensus 77 ~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~-~~~~~g~~~~~g~~~~~--~~~~~~-- 150 (332)
T 3lzw_A 77 MAKFDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPR-KLELENAEQYEGKNLHY--FVDDLQ-- 150 (332)
T ss_dssp HTTSCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEEC-CCCCTTGGGGBTTTEES--SCSCGG--
T ss_pred HHHhCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCC-CCCCCChhhccCceEEE--ecCCHH--
Confidence 5667999999999999998765 78888887 999999999999 554 344454332 23332 111111
Q ss_pred HHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCC
Q 011351 201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD 280 (488)
Q Consensus 201 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~ 280 (488)
...+++++|||+|.+|+|+|..|.+.+.+|+++++.+.+.+. ++ ..+.+++.||++++++.+++++.+++
T Consensus 151 ---~~~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~~--~~-----~~~~l~~~gv~~~~~~~v~~i~~~~~ 220 (332)
T 3lzw_A 151 ---KFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAH--EH-----SVENLHASKVNVLTPFVPAELIGEDK 220 (332)
T ss_dssp ---GGBTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSSC--HH-----HHHHHHHSSCEEETTEEEEEEECSSS
T ss_pred ---HcCCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCcc--HH-----HHHHHhcCCeEEEeCceeeEEecCCc
Confidence 125799999999999999999999999999999999887542 22 23447889999999999999985432
Q ss_pred CcEEEEEeCC-----CcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCccc
Q 011351 281 GRVAAVKLED-----GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 355 (488)
Q Consensus 281 ~~v~~v~l~~-----g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~ 355 (488)
+..+.+.+ ++++++|.||+|+|++|+.++++.+++..++|+|.||++++|+.|||||+|||+..+..
T Consensus 221 --~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~------ 292 (332)
T 3lzw_A 221 --IEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIEKNSIVVKSTMETNIEGFFAAGDICTYEGK------ 292 (332)
T ss_dssp --CCEEEEEETTSCCEEEEECSEEEECCCEECCCGGGGGSSCCEETTEEECCTTSBCSSTTEEECGGGEECTTC------
T ss_pred --eEEEEEEecCCCceEEEECCEEEEeeccCCCchHHhhcCccccCCeEEeCCCCceecCCEEEccceecCCCC------
Confidence 34566655 45799999999999999999999999988888999999999999999999999976432
Q ss_pred ccccHHHHHHHHHHHHHHHhc
Q 011351 356 RVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 356 ~~~~~~~A~~~g~~~a~~i~~ 376 (488)
...+..|..+|+.+|.+|+.
T Consensus 293 -~~~~~~A~~~g~~aa~~i~~ 312 (332)
T 3lzw_A 293 -VNLIASGFGEAPTAVNNAKA 312 (332)
T ss_dssp -CCCHHHHHHHHHHHHHHHHH
T ss_pred -cceEeeehhhHHHHHHHHHH
Confidence 22567788899999998875
No 57
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=100.00 E-value=1.9e-36 Score=294.22 Aligned_cols=290 Identities=21% Similarity=0.251 Sum_probs=213.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
+++||+|||||+||+++|..|++.|+ +|+|||++ .. ... .. ......++++.............++
T Consensus 14 ~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~--~g-g~~------~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (323)
T 3f8d_A 14 EKFDVIIVGLGPAAYGAALYSARYML---KTLVIGET--PG-GQL------TE--AGIVDDYLGLIEIQASDMIKVFNKH 79 (323)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESS--TT-GGG------GG--CCEECCSTTSTTEEHHHHHHHHHHH
T ss_pred CccCEEEECccHHHHHHHHHHHHCCC---cEEEEecc--CC-Cee------cc--cccccccCCCCCCCHHHHHHHHHHH
Confidence 35799999999999999999999987 79999997 11 100 00 0001111111111111111223455
Q ss_pred HHHCCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCC---CcEEEecCHHHHHHHHHhh
Q 011351 130 YKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSL 204 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~---~gv~~~~~~~~~~~~~~~~ 204 (488)
+++.+++++. ++|++++.+. ..+.+.++..+.||+||+|||+.+. .+.+++... .++++. .......
T Consensus 80 ~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~-~~~i~g~~~~~~~~~~~~------~~~~~~~ 151 (323)
T 3f8d_A 80 IEKYEVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRR-KLGVPGEQEFAGRGISYC------SVADAPL 151 (323)
T ss_dssp HHTTTCCEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEEC-CCCCTTTTTTBTTTEESC------HHHHGGG
T ss_pred HHHcCCEEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCc-cCCCCchhhhcCCceEEe------ccCCHhH
Confidence 6678999998 8999998774 4678888888999999999999876 455555433 444332 1122234
Q ss_pred hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEE
Q 011351 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 284 (488)
Q Consensus 205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~ 284 (488)
..+++++|+|+|.+|+|+|..|.+.+.+|+++++.+.+++ ++. .+.+.+++.||++++++++++++.+ +.+.
T Consensus 152 ~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~---~~~---~~~~~~~~~gv~~~~~~~v~~i~~~--~~~~ 223 (323)
T 3f8d_A 152 FKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA---QPI---YVETVKKKPNVEFVLNSVVKEIKGD--KVVK 223 (323)
T ss_dssp GTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS---CHH---HHHHHHTCTTEEEECSEEEEEEEES--SSEE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc---CHH---HHHHHHhCCCcEEEeCCEEEEEecc--Ccee
Confidence 5689999999999999999999999999999999988775 332 2333444559999999999999854 4555
Q ss_pred EEEeCC---Cc--EEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccc
Q 011351 285 AVKLED---GS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE 358 (488)
Q Consensus 285 ~v~l~~---g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~ 358 (488)
.+.+.+ |+ ++++|.||+++|++|+.++++.+++..+ +|+|.||++++|+.|||||+|||+..+. ...
T Consensus 224 ~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~g~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~-------~~~ 296 (323)
T 3f8d_A 224 QVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWL-------GFR 296 (323)
T ss_dssp EEEEEETTTCCEEEEECSEEEECCCEECCHHHHHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBSTTT-------TCC
T ss_pred EEEEEECCCCceEEEEcCEEEEEECCCCChhHHhhcCeeecCCCcEecCCCceecCCCEEEcceecCCCC-------ccc
Confidence 677765 76 7999999999999999999999999865 6889999999999999999999998641 022
Q ss_pred cHHHHHHHHHHHHHHHhc
Q 011351 359 HVDHARQSAQHCIKALLS 376 (488)
Q Consensus 359 ~~~~A~~~g~~~a~~i~~ 376 (488)
.+..|..+|+.+|.+|..
T Consensus 297 ~~~~A~~~g~~aa~~i~~ 314 (323)
T 3f8d_A 297 QVITAVAQGAVAATSAYR 314 (323)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred ceeehhhHHHHHHHHHHH
Confidence 567788888888888753
No 58
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=100.00 E-value=2.9e-37 Score=341.06 Aligned_cols=348 Identities=18% Similarity=0.180 Sum_probs=242.4
Q ss_pred cccccccceeeccccC--CCCcccceec---cccccccccccccccc---------ccc--------CCCCCeEEEEcCc
Q 011351 3 SVSNSLSFKHGLSLWC--PQSPSLHRIR---HSSAKNFQRRGFVVAY---------SSF--------ANENREFVIVGGG 60 (488)
Q Consensus 3 ~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~---------~~~--------~~~~~~vvIIGgG 60 (488)
..+|||+++||++|.+ +|+.+|.+.. .++.+....|+..+.. .|. ....++|+|||||
T Consensus 117 ~~~n~~p~~~grvCp~~~~Ce~~C~~~~~~~~pv~I~~le~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~VvVIGgG 196 (1025)
T 1gte_A 117 FSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAYSAKIALLGAG 196 (1025)
T ss_dssp HHHCTTHHHHHHHCCGGGSGGGGCGGGGSTTCCCCHHHHHHHHHHHHHHHTCCCCCCTTSCCGGGSCGGGGCCEEEECCS
T ss_pred HhcCChhHhhcCCCCChhhHHhhCccCCCCCCCccHhHHHHHHHHHHHHhCCccccCccccccccCCccCCCEEEEECcc
Confidence 3689999999999987 9999999965 5777777776665531 010 1235799999999
Q ss_pred hHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeC
Q 011351 61 NAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQ 140 (488)
Q Consensus 61 ~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 140 (488)
+||++||..|++.|+. +|+|||+++..... +. +..+. .+++. . ......+++++.+++++.+
T Consensus 197 pAGl~aA~~L~~~G~~--~Vtv~E~~~~~GG~---~~--~~ip~----~~~~~--~-----~~~~~~~~~~~~gv~~~~~ 258 (1025)
T 1gte_A 197 PASISCASFLARLGYS--DITIFEKQEYVGGL---ST--SEIPQ----FRLPY--D-----VVNFEIELMKDLGVKIICG 258 (1025)
T ss_dssp HHHHHHHHHHHHTTCC--CEEEEESSSSCSTH---HH--HTSCT----TTSCH--H-----HHHHHHHHHHTTTCEEEES
T ss_pred HHHHHHHHHHHhcCCC--cEEEEeCCCCCCcc---cc--ccCCc----ccCCH--H-----HHHHHHHHHHHCCcEEEcc
Confidence 9999999999999872 69999997654221 00 00010 01100 0 0012245677889999998
Q ss_pred CcEEEEeCCCcEEEeCCCcEEEeccEEeccCCC-CCcCCCCCCCC-CCcEEEecCHHHHHHHHHh----------hhcCC
Q 011351 141 DPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGY-LPGVHYIRDVADADALISS----------LEKAK 208 (488)
Q Consensus 141 ~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~-~~~~~~~~g~~-~~gv~~~~~~~~~~~~~~~----------~~~~~ 208 (488)
+.+. .+.++++++..+.||+||||||+. ++.++..+|.. .+++++..++......... ...++
T Consensus 259 ~~v~-----~~~v~~~~~~~~~~d~vvlAtGa~~p~~l~~~~G~~~~~gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~ 333 (1025)
T 1gte_A 259 KSLS-----ENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRG 333 (1025)
T ss_dssp CCBS-----TTSBCHHHHHHTTCCEEEECCCCCEECCCGGGTTCCTTTTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCS
T ss_pred cEec-----cceEEhhhcCccCCCEEEEecCCCCCCCCCCCCCCCCCCCEEEhHHHHHHHHhhcccccccccccccccCC
Confidence 6652 134555555557899999999984 66444333422 3567654332211111000 12357
Q ss_pred eEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCc-CcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEE
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 286 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~-~v~lv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v 286 (488)
+|+|||+|.+|+|+|..+.++|. +|+++++.+. +++ .+++++ +.+++.||++++++.++++... ++++..+
T Consensus 334 ~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~-~~~~e~-----~~~~~~Gv~~~~~~~~~~i~~~-~g~v~~v 406 (1025)
T 1gte_A 334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIR-AVPEEV-----ELAKEEKCEFLPFLSPRKVIVK-GGRIVAV 406 (1025)
T ss_dssp EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCC-SCHHHH-----HHHHHTTCEEECSEEEEEEEEE-TTEEEEE
T ss_pred cEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCC-CCHHHH-----HHHHHcCCEEEeCCCceEEEcc-CCeEEEE
Confidence 99999999999999999999996 8999999884 444 334433 4567889999999999999753 5666556
Q ss_pred EeC------CC---------cEEEcCEEEEeecCccC-Chhhhh-cCCccc-CCCEEeCC-CCCCCCCCEEEEceecccC
Q 011351 287 KLE------DG---------STIDADTIVIGIGAKPT-VSPFER-VGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFP 347 (488)
Q Consensus 287 ~l~------~g---------~~i~~D~vi~a~G~~p~-~~~~~~-~gl~~~-~g~i~vd~-~~~t~~~~Ifa~GD~a~~~ 347 (488)
.+. +| +++++|.||+|+|++|+ ..++++ .|++.+ +|+|.||+ +++|+.|+|||+|||+..+
T Consensus 407 ~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~Ts~~~VfA~GD~~~~~ 486 (1025)
T 1gte_A 407 QFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMA 486 (1025)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSC
T ss_pred EEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCCCccCCCCEEEeCCCCCCc
Confidence 542 23 36899999999999864 556666 488876 67799997 8999999999999999854
Q ss_pred CccCCcccccccHHHHHHHHHHHHHHHhc------C-CCCCCCCCCceeE
Q 011351 348 LKMYDRTARVEHVDHARQSAQHCIKALLS------A-QTHTYDYLPYFYS 390 (488)
Q Consensus 348 ~~~~~~~~~~~~~~~A~~~g~~~a~~i~~------~-~~~~~~~~p~~~~ 390 (488)
. .+..|..+|+.+|++|.+ + ....+...||||+
T Consensus 487 ~----------~~~~A~~~G~~aA~~i~~~L~~~~~~~~~~~~~~p~~~~ 526 (1025)
T 1gte_A 487 N----------TTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYT 526 (1025)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCCBCCCCC
T ss_pred h----------HHHHHHHHHHHHHHHHHHHHHhccCCCcccCcCcccccc
Confidence 3 344578888888888863 1 2224577999998
No 59
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=100.00 E-value=2e-36 Score=305.44 Aligned_cols=302 Identities=20% Similarity=0.207 Sum_probs=214.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
.++|||||||+||++||.+|++.+. +.+|||||+++++.|. |.++. +... ...+.++ .....+++
T Consensus 2 ~K~VvIIGgG~aGl~aA~~L~~~~~-~~~VtlI~~~~~~~~~-p~l~~-v~~g-~~~~~~i-----------~~~~~~~~ 66 (430)
T 3hyw_A 2 AKHVVVIGGGVGGIATAYNLRNLMP-DLKITLISDRPYFGFT-PAFPH-LAMG-WRKFEDI-----------SVPLAPLL 66 (430)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCT-TCEEEEECSSSEEECG-GGHHH-HHHT-CSCGGGS-----------EEESTTTG
T ss_pred CCcEEEECCCHHHHHHHHHHhccCc-CCeEEEEcCCCCCccC-ccHHH-HhcC-CCCHHHh-----------hhcHHHHH
Confidence 4689999999999999999999875 6799999999988774 54432 1111 1111111 12234556
Q ss_pred HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhh---cC
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE---KA 207 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~---~~ 207 (488)
++.+++++.+ +|+.||+++++|++++|+++.||+||||||+++. + .++|.. ++...+.+..++.++++.+. ..
T Consensus 67 ~~~gv~~i~~-~v~~Id~~~~~V~~~~g~~i~YD~LViAtG~~~~-~-~i~G~~-e~~~~~~~~~~a~~~~~~l~~~~~~ 142 (430)
T 3hyw_A 67 PKFNIEFINE-KAESIDPDANTVTTQSGKKIEYDYLVIATGPKLV-F-GAEGQE-ENSTSICTAEHALETQKKLQELYAN 142 (430)
T ss_dssp GGGTEEEECS-CEEEEETTTTEEEETTCCEEECSEEEECCCCEEE-C-CSBTHH-HHSCCCSSHHHHHHHHHHHHHHHHS
T ss_pred HHCCcEEEEe-EEEEEECCCCEEEECCCCEEECCEEEEeCCCCcc-C-CccCcc-cCcCCcccHHHHHHHHHHHHhhccC
Confidence 7789999875 8999999999999999999999999999998753 3 344432 33456677777776665543 34
Q ss_pred CeEEEECCCH------HHHHHH----HHHHhCC----CcEEEEecCCcCcc--cccCHHHHHHHHHHHHHcCcEEEcCCe
Q 011351 208 KKVVVVGGGY------IGMEVA----AAAVGWK----LDTTIIFPENHLLQ--RLFTPSLAQRYEQLYQQNGVKFVKGAS 271 (488)
Q Consensus 208 ~~vvVvG~G~------~g~e~A----~~l~~~g----~~v~lv~~~~~~l~--~~~~~~~~~~~~~~l~~~GV~v~~~~~ 271 (488)
+.++|+|++. .+.|++ ..+.+.+ .++++++..+.+.. ....+...+.+++.++++||++++++.
T Consensus 143 ~~~vv~gg~~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~ 222 (430)
T 3hyw_A 143 PGPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVA 222 (430)
T ss_dssp CCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCE
T ss_pred CceEEEeCCCcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEeCce
Confidence 5566666542 233444 3445554 46888887765532 234567788899999999999999999
Q ss_pred EEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeecCccCChhhhhcCCc--cc-CCCEEeCCCCC-CCCCCEEEEceecc
Q 011351 272 IKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLN--SS-VGGIQVDGQFR-TRMPGIFAIGDVAA 345 (488)
Q Consensus 272 v~~i~~~~~~~v~~v~l~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~--~~-~g~i~vd~~~~-t~~~~Ifa~GD~a~ 345 (488)
|++++.+ .+ .+...+| +++++|.+++++|.+|+ +++..+++. .+ +|.+.||+++| |++|||||+|||+.
T Consensus 223 v~~v~~~---~~-~~~~~~g~~~~i~~d~vi~~~G~~~~-~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~ 297 (430)
T 3hyw_A 223 VKAIEPD---KV-IYEDLNGNTHEVPAKFTMFMPSFQGP-EVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTA 297 (430)
T ss_dssp EEEECSS---EE-EEECTTSCEEEEECSEEEEECEEECC-HHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBC
T ss_pred EEEEeCC---ce-EEEeeCCCceEeecceEEEeccCCCc-hHHHhcccccccCCceEEEecccccCCCCCCEEEeccEEe
Confidence 9999732 22 2333333 57999999999999998 677766543 34 35689999999 79999999999999
Q ss_pred cCCccCCc--ccccccHHHHHHHHHHHHHHHhc
Q 011351 346 FPLKMYDR--TARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 346 ~~~~~~~~--~~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
.|...... .....+.+.|.+||+.+|+||+.
T Consensus 298 ~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~~ 330 (430)
T 3hyw_A 298 IPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVN 330 (430)
T ss_dssp CCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCcccCcCcCccchHHHHHHHHHHHHHHHHHH
Confidence 87532111 11123566799999999999975
No 60
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=100.00 E-value=1.3e-35 Score=288.25 Aligned_cols=289 Identities=24% Similarity=0.286 Sum_probs=209.4
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (488)
++++||+|||||+||+++|..|++.|+ +|+|||+.... ....... ....++++....+........+
T Consensus 14 ~~~~dvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~g--g~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 80 (319)
T 3cty_A 14 ERDFDVVIVGAGAAGFSAAVYAARSGF---SVAILDKAVAG--GLTAEAP--------LVENYLGFKSIVGSELAKLFAD 80 (319)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSTT--GGGGGCS--------CBCCBTTBSSBCHHHHHHHHHH
T ss_pred cCCCcEEEECcCHHHHHHHHHHHhCCC---cEEEEeCCCCC--ccccccc--------hhhhcCCCcccCHHHHHHHHHH
Confidence 345799999999999999999999987 89999985321 0000000 0001111100000000112334
Q ss_pred HHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCC---CcEEEecCHHHHHHHHHh
Q 011351 129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISS 203 (488)
Q Consensus 129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~---~gv~~~~~~~~~~~~~~~ 203 (488)
++++.+++++. .+|+.++.+.+ .|.+ ++.++.||+||+|||+.+. .+.+++.+. .++++... ....
T Consensus 81 ~~~~~~v~~~~-~~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~-~~~i~g~~~~~~~~~~~~~~------~~~~ 151 (319)
T 3cty_A 81 HAANYAKIREG-VEVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTHK-HLGVKGESEYFGKGTSYCST------CDGY 151 (319)
T ss_dssp HHHTTSEEEET-CCEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEEC-CCCCBTTTTTBTTTEESCHH------HHGG
T ss_pred HHHHcCCEEEE-eeEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCcc-cCCCCChHHhCCceEEEEEe------cchh
Confidence 55667899887 68999987655 5655 5667999999999999876 344455321 34433221 1223
Q ss_pred hhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcE
Q 011351 204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV 283 (488)
Q Consensus 204 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v 283 (488)
...+++++|||+|.+|+|+|..|.+.+.+|+++++.+.+.. ++ .+.+.+++.||+++++++++++..+ ++++
T Consensus 152 ~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~---~~----~l~~~l~~~gv~i~~~~~v~~i~~~-~~~v 223 (319)
T 3cty_A 152 LFKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMC---EN----AYVQEIKKRNIPYIMNAQVTEIVGD-GKKV 223 (319)
T ss_dssp GGBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCS---CH----HHHHHHHHTTCCEECSEEEEEEEES-SSSE
T ss_pred hcCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCC---CH----HHHHHHhcCCcEEEcCCeEEEEecC-CceE
Confidence 45689999999999999999999999999999999887643 33 3445566889999999999999864 4445
Q ss_pred EEEEeC---CCc--EEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCccccc
Q 011351 284 AAVKLE---DGS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 357 (488)
Q Consensus 284 ~~v~l~---~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~ 357 (488)
..+.+. +|+ ++++|.||+|+|++|+.++++++++..+ +|+|.||++++|+.|+|||+|||+..+.
T Consensus 224 ~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~--------- 294 (319)
T 3cty_A 224 TGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVDSRQRTSVPGVYAAGDVTSGNF--------- 294 (319)
T ss_dssp EEEEEEETTTCCEEEECCSEEEECCCEEECCGGGTTSCCCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCC---------
T ss_pred EEEEEEEcCCCceEEEecCEEEEeeCCccChHHHhhccccccCCccEeCCCCCccCCCCEEEeecccCcch---------
Confidence 566664 665 6999999999999999999998888765 5889999999999999999999998632
Q ss_pred ccHHHHHHHHHHHHHHHhc
Q 011351 358 EHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 358 ~~~~~A~~~g~~~a~~i~~ 376 (488)
..+..|..+|+.+|.+|..
T Consensus 295 ~~~~~A~~~g~~aa~~i~~ 313 (319)
T 3cty_A 295 AQIASAVGDGCKAALSLYS 313 (319)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 1566789999999998864
No 61
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=100.00 E-value=3.9e-36 Score=301.29 Aligned_cols=297 Identities=19% Similarity=0.203 Sum_probs=219.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
.|||||||||+||++||.+|++.+. +.+|||||+++.+.|. |.+.. +.... .....+ ....+.+
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~-~~~Vtlie~~~~~~~~-p~~~~-v~~g~-~~~~~~------------~~~~~~~ 65 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADP-SIEVTLIEPNETYYTC-YMSNE-VIGGD-RELASL------------RVGYDGL 65 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSCSSEECS-TTHHH-HHHTS-SCGGGG------------EECSHHH
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCc-CCeEEEEeCCCCCCCc-cCHHH-HhcCC-CCHHHH------------hhCHHHH
Confidence 4799999999999999999999886 6799999999876443 33321 22111 111111 2334566
Q ss_pred HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCC----CCcEEEecCHHHHHHHHHhhh-
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY----LPGVHYIRDVADADALISSLE- 205 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~----~~gv~~~~~~~~~~~~~~~~~- 205 (488)
...+++++. .+|+.||++++++++.+|+++.||+||||||+.+. ++.++|.. ...++.+.+..+...+.+.+.
T Consensus 66 ~~~gv~~i~-~~v~~id~~~~~v~~~~g~~i~yd~LviAtG~~~~-~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~ 143 (401)
T 3vrd_B 66 RAHGIQVVH-DSALGIDPDKKLVKTAGGAEFAYDRCVVAPGIDLL-YDKIEGYSEALAAKLPHAWKAGEQTALLRRQLES 143 (401)
T ss_dssp HHTTCEEEC-SCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC-GGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHH
T ss_pred HHCCCEEEE-eEEEEEEccCcEEEecccceeecceeeeccCCccc-cCCccCchhhcccCccceeccHHHHHHHHHHHHh
Confidence 778999987 58999999999999999999999999999999876 34555532 223455666666666655543
Q ss_pred --cCCeEEEECCC------H----HHHHHHHHHHhCC--CcEEEEecCCcCcc-cccCHHHHHHHHHHHHHcCcEEEcCC
Q 011351 206 --KAKKVVVVGGG------Y----IGMEVAAAAVGWK--LDTTIIFPENHLLQ-RLFTPSLAQRYEQLYQQNGVKFVKGA 270 (488)
Q Consensus 206 --~~~~vvVvG~G------~----~g~e~A~~l~~~g--~~v~lv~~~~~~l~-~~~~~~~~~~~~~~l~~~GV~v~~~~ 270 (488)
.+..+++.+++ . .+.+++..+++.+ .+|++++..+.+.. ..+++.+.+.+.+.+++.||++++++
T Consensus 144 ~~~~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~ 223 (401)
T 3vrd_B 144 MDDGGVVIIAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGP 223 (401)
T ss_dssp SCTTCEEEEECCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTT
T ss_pred cccCCcEEEecCCccEEeehHHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCc
Confidence 33444444321 1 3456666666554 57899988887643 23566677777777889999999999
Q ss_pred eEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCC-CC-CCCCCEEEEceeccc-C
Q 011351 271 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQ-FR-TRMPGIFAIGDVAAF-P 347 (488)
Q Consensus 271 ~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~-~~-t~~~~Ifa~GD~a~~-~ 347 (488)
++..++.+.+.. .+.+++|+++++|.+++++|.+|+ .+++++++..++|+|.||++ +| |++|||||+|||+.. |
T Consensus 224 ~v~~v~~~~~~~--~v~~~~g~~i~~D~vi~~~g~~~~-~~~~~~gl~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~ 300 (401)
T 3vrd_B 224 DAAVVKTDTEAM--TVETSFGETFKAAVINLIPPQRAG-KIAQSASLTNDSGWCPVDIRTFESSLQPGIHVIGDACNAAP 300 (401)
T ss_dssp TTCEEEEETTTT--EEEETTSCEEECSEEEECCCEEEC-HHHHHTTCCCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTT
T ss_pred eEEEEEecccce--EEEcCCCcEEEeeEEEEecCcCCc-hhHhhccccccCCCEEECCCcceecCCCCEEEecccccCCC
Confidence 999988654433 578999999999999999999998 78999999888899999986 55 689999999999864 2
Q ss_pred CccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351 348 LKMYDRTARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 348 ~~~~~~~~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
.+ .+...|..||+.+|+||++
T Consensus 301 ~p--------k~a~~A~~qa~v~A~ni~~ 321 (401)
T 3vrd_B 301 MP--------KSAYSANSQAKVAAAAVVA 321 (401)
T ss_dssp SC--------BSHHHHHHHHHHHHHHHHH
T ss_pred CC--------chHHHHHHHHHHHHHHHHH
Confidence 22 2556689999999999864
No 62
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=100.00 E-value=2.1e-35 Score=296.62 Aligned_cols=288 Identities=20% Similarity=0.212 Sum_probs=221.8
Q ss_pred CeEEEEcCchHHHHHHHHHHH---cCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351 52 REFVIVGGGNAAGYAARTFVE---HGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~---~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (488)
++|||||||+||+++|..|++ .|. +|+|||+++.+.|. |.+.. .........++ .....+
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~---~V~vie~~~~~~~~-~~~~~--~~~~~~~~~~~-----------~~~~~~ 64 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKA---DVKVINKSRFSYFR-PALPH--VAIGVRDVDEL-----------KVDLSE 64 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGS---EEEEEESSSEEEEC-CSSCC--CCSSCCCCCCE-----------EEEHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCC---eEEEEeCCCCceec-cchhh--cccCCcCHHHH-----------HHHHHH
Confidence 689999999999999999999 655 89999999876554 33321 11111111111 123456
Q ss_pred HHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcE----EEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhh
Q 011351 129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKL----LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL 204 (488)
Q Consensus 129 ~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~----i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~ 204 (488)
++++.+++++.+ +|+.++++.+.|++.+++. +.||+||+|||+.+. .+.++|... ....+.+..+...+.+.+
T Consensus 65 ~~~~~gv~~~~~-~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~-~~~ipG~~~-~~~~~~~~~~~~~~~~~l 141 (409)
T 3h8l_A 65 ALPEKGIQFQEG-TVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLA-TELVKGWDK-YGYSVCEPEFATKLREKL 141 (409)
T ss_dssp HTGGGTCEEEEC-EEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEEC-GGGSBTHHH-HCEESSSTTHHHHHHHHH
T ss_pred HHhhCCeEEEEe-eEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcC-ccCCCChhh-cCcCcCCHHHHHHHHHHH
Confidence 667789999986 9999999999999888764 999999999999776 344454321 345566666776666655
Q ss_pred hcC-CeEEEECCCH-------------------------HHHHHHH----HHHhCCC----cEEEEecCCcCcccccCHH
Q 011351 205 EKA-KKVVVVGGGY-------------------------IGMEVAA----AAVGWKL----DTTIIFPENHLLQRLFTPS 250 (488)
Q Consensus 205 ~~~-~~vvVvG~G~-------------------------~g~e~A~----~l~~~g~----~v~lv~~~~~~l~~~~~~~ 250 (488)
... ++++|||+|. .++|+|. .+.+.|. +|+++++.+ +++ .+++.
T Consensus 142 ~~~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~-~l~-~~~~~ 219 (409)
T 3h8l_A 142 ESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGE-YLS-DLSPN 219 (409)
T ss_dssp HHCCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSS-SST-TBCHH
T ss_pred HHhcCCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCc-ccc-ccCHH
Confidence 443 6777999991 4677774 5567774 899999988 665 37889
Q ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhc--CCcccCCCEEeCC
Q 011351 251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV--GLNSSVGGIQVDG 328 (488)
Q Consensus 251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~--gl~~~~g~i~vd~ 328 (488)
+.+.+.+.+++.||+++++++|++++.+ .+.+++|+++++|.||+++|++|+ .+++++ ++..++|++.||+
T Consensus 220 ~~~~~~~~l~~~gV~~~~~~~v~~i~~~------~v~~~~g~~~~~D~vi~a~G~~~~-~~l~~~~~~l~~~~G~i~vd~ 292 (409)
T 3h8l_A 220 SRKAVASIYNQLGIKLVHNFKIKEIREH------EIVDEKGNTIPADITILLPPYTGN-PALKNSTPDLVDDGGFIPTDL 292 (409)
T ss_dssp HHHHHHHHHHHHTCEEECSCCEEEECSS------EEEETTSCEEECSEEEEECCEECC-HHHHTSCGGGSCTTSCBCBBT
T ss_pred HHHHHHHHHHHCCCEEEcCCceEEECCC------eEEECCCCEEeeeEEEECCCCCcc-HHHHhccccCcCCCCCEEeCc
Confidence 9999999999999999999999999743 478899999999999999999998 678877 5544578899999
Q ss_pred CCCC-CCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351 329 QFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 329 ~~~t-~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
++|| +.|||||+|||+..+.+. .+..|..||+.+|+||.+
T Consensus 293 ~~~~~~~~~vfa~GD~~~~~~~~--------~~~~A~~q~~~aa~~i~~ 333 (409)
T 3h8l_A 293 NMVSIKYDNVYAVGDANSMTVPK--------LGYLAVMTGRIAAQHLAN 333 (409)
T ss_dssp TSBBSSCTTEEECGGGBTTCCSC--------CHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCEEEeehhccCCCCc--------HHHHHHHHHHHHHHHHHH
Confidence 9999 899999999999864322 456789999999999975
No 63
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=100.00 E-value=4.5e-36 Score=288.11 Aligned_cols=278 Identities=21% Similarity=0.174 Sum_probs=204.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
++||+|||||+||+++|..|++.|+ +|+|||+++..... +.....+. +..............+.+
T Consensus 2 ~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~~~~-~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 66 (297)
T 3fbs_A 2 KFDVIIIGGSYAGLSAALQLGRARK---NILLVDAGERRNRF-ASHSHGFL-----------GQDGKAPGEIIAEARRQI 66 (297)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTC---CEEEEECCCCGGGG-CSCCCSST-----------TCTTCCHHHHHHHHHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCCccccc-chhhcCCc-----------CCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999999987 89999987532110 11111111 000000000011223334
Q ss_pred HHC-CCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCC---CcEEEecCHHHHHHHHHhh
Q 011351 131 KEK-GIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSL 204 (488)
Q Consensus 131 ~~~-~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~---~gv~~~~~~~~~~~~~~~~ 204 (488)
.+. +++++. ++|+.++++. ..+++.+++++.||+||+|||+.+. .|.+++... .++++.. ......
T Consensus 67 ~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~-~~~~~g~~~~~~~~~~~~~------~~~~~~ 138 (297)
T 3fbs_A 67 ERYPTIHWVE-GRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDE-LPEIAGLRERWGSAVFHCP------YCHGYE 138 (297)
T ss_dssp TTCTTEEEEE-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEEE-CCCCBTTGGGBTTTEESCH------HHHTGG
T ss_pred HhcCCeEEEE-eEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCC-CCCCCCchhhcCCeeEEcc------cCcchh
Confidence 444 688876 5899998765 4788888988999999999999875 455555432 2333221 112223
Q ss_pred hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEE
Q 011351 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 284 (488)
Q Consensus 205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~ 284 (488)
..+++++|||+|.+|+|+|..|.+.+ +|+++.+.+.. +.+ .+.+.+++.||+++. +++++++.+ +
T Consensus 139 ~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~~----~~~----~~~~~l~~~gv~i~~-~~v~~i~~~--~--- 203 (297)
T 3fbs_A 139 LDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVE----PDA----DQHALLAARGVRVET-TRIREIAGH--A--- 203 (297)
T ss_dssp GTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTCC----CCH----HHHHHHHHTTCEEEC-SCEEEEETT--E---
T ss_pred hcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCCC----CCH----HHHHHHHHCCcEEEc-ceeeeeecC--C---
Confidence 46899999999999999999999999 99999887752 232 456778899999996 889999743 2
Q ss_pred EEEeCCCcEEEcCEEEEeecCccCChhhhhcCCcccC---C-CEEeCCCCCCCCCCEEEEceecccCCccCCcccccccH
Q 011351 285 AVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSV---G-GIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV 360 (488)
Q Consensus 285 ~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~---g-~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~ 360 (488)
.+.+.+|+++++|.|++++|++|+.++++++++..++ | ++.||++++|+.|||||+|||+..+. .+
T Consensus 204 ~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~g~~~~~~~~G~~i~vd~~~~t~~~~vya~GD~~~~~~----------~~ 273 (297)
T 3fbs_A 204 DVVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVARPAG----------SV 273 (297)
T ss_dssp EEEETTSCEEEESEEEECCEEECCCSCHHHHTCCEEEETTEEEECCCTTCBCSSTTEEECSGGGCTTC----------CH
T ss_pred eEEeCCCCEEEEEEEEEccCcccCchhHHhcCCccccCCCCceEEeCCCCccCCCCEEEEeecCCchH----------HH
Confidence 6788999999999999999999999999999887653 4 79999999999999999999998632 55
Q ss_pred HHHHHHHHHHHHHHhc
Q 011351 361 DHARQSAQHCIKALLS 376 (488)
Q Consensus 361 ~~A~~~g~~~a~~i~~ 376 (488)
..|..+|+.+|.+|..
T Consensus 274 ~~A~~~g~~aa~~i~~ 289 (297)
T 3fbs_A 274 ALAVGDGAMAGAAAHR 289 (297)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHH
Confidence 6788888888888753
No 64
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=100.00 E-value=2.6e-36 Score=292.36 Aligned_cols=299 Identities=20% Similarity=0.227 Sum_probs=202.7
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccc-cCCCCCCCCH
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTC-VGSGGERQTP 127 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 127 (488)
++++||+||||||||++||.+|++.|+ +|+|||++...... + .+.+.. .....++++++.. .+.+...+..
T Consensus 2 ~~~yDvvIIG~GpAGl~AA~~la~~g~---~v~liE~~~~gg~~-~---~G~~~~-~~~i~~~~g~~~~i~~~~l~~~~~ 73 (314)
T 4a5l_A 2 SNIHDVVIIGSGPAAHTAAIYLGRSSL---KPVMYEGFMAGGVA-A---GGQLTT-TTIIENFPGFPNGIDGNELMMNMR 73 (314)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHHTTC---CCEEECCSSGGGCC-T---TCGGGG-SSEECCSTTCTTCEEHHHHHHHHH
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCC---CEEEEecCCCCCcc-c---CCCcCC-hHHhhhccCCcccCCHHHHHHHHH
Confidence 346899999999999999999999987 89999987532111 0 011110 1111122322211 1111112234
Q ss_pred hHHHHCCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhh
Q 011351 128 EWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE 205 (488)
Q Consensus 128 ~~~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~ 205 (488)
+..++.++++... .+....... +.+.+.++.++.||+||||||+.|+. |++||.+.............+. .....
T Consensus 74 ~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~-~~ipG~~~~~~~~~~~~~~~~~-~~~~~ 150 (314)
T 4a5l_A 74 TQSEKYGTTIITE-TIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKR-MHVPGEDKYWQNGVSACAICDG-AVPIF 150 (314)
T ss_dssp HHHHHTTCEEECC-CEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECC-CCCTTHHHHBTTTEESCHHHHT-TSGGG
T ss_pred HHHhhcCcEEEEe-EEEEeecCCCceEEEECCCeEEEEeEEEEcccccccc-cCCCccccccccceeeehhhhh-hhhhc
Confidence 4566778888764 666665543 46777888899999999999998864 5555543221111111122221 12234
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 285 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~ 285 (488)
.+++++|||+|.+|+|+|..|.++|.+|+++++.+.... .+. ...+.+...+++.+....+.++... +.....
T Consensus 151 ~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~ 223 (314)
T 4a5l_A 151 RNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRA---SKT---MQERVLNHPKIEVIWNSELVELEGD-GDLLNG 223 (314)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHH---HHHHHHTCTTEEEECSEEEEEEEES-SSSEEE
T ss_pred CCCeEEEECCChHHHHHHHHHHHhCCeeeeecccccccc---cch---hhhhhhcccceeeEeeeeeEEEEee-eeccce
Confidence 679999999999999999999999999999998876543 222 2334556678999999888888754 333333
Q ss_pred EEe-----CCCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccH
Q 011351 286 VKL-----EDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV 360 (488)
Q Consensus 286 v~l-----~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~ 360 (488)
+.+ .+++++++|.|++++|++||+++++.. +..+++++.||+++|||+|||||+|||+..+.. .+
T Consensus 224 ~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l~~~-~~~~~~G~iv~~~~~Ts~pgIyA~GDv~~~~~~---------~~ 293 (314)
T 4a5l_A 224 AKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLGGQ-VKTADDGYILTEGPKTSVDGVFACGDVCDRVYR---------QA 293 (314)
T ss_dssp EEEEETTTCCEEEEECSEEEECSCEEESCGGGTTS-SCBCTTSCBCCBTTBCSSTTEEECSTTTCSSCC---------CH
T ss_pred eEEeecccccceeeccccceEecccccChhHhccc-ceEcCCeeEeCCCCccCCCCEEEEEeccCCcch---------HH
Confidence 333 345689999999999999999988654 445555667999999999999999999986542 33
Q ss_pred HHHHHHHHHHHHHHh
Q 011351 361 DHARQSAQHCIKALL 375 (488)
Q Consensus 361 ~~A~~~g~~~a~~i~ 375 (488)
..|..+|+.||.++.
T Consensus 294 ~~A~~~G~~AA~~~~ 308 (314)
T 4a5l_A 294 IVAAGSGCMAALSCE 308 (314)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 457778888887764
No 65
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=100.00 E-value=3.3e-35 Score=286.13 Aligned_cols=288 Identities=20% Similarity=0.269 Sum_probs=207.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCccc-ccCCCCCCCCHh
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPE 128 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 128 (488)
+++||+|||||+||+++|..|++.|+ +|+|||++. .... ..... .+ ..++++.. ...........+
T Consensus 7 ~~~dvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~-~gg~-~~~~~-~~-------~~~~~~~~~~~~~~~~~~l~~ 73 (325)
T 2q7v_A 7 HDYDVVIIGGGPAGLTAAIYTGRAQL---STLILEKGM-PGGQ-IAWSE-EV-------ENFPGFPEPIAGMELAQRMHQ 73 (325)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSC-TTGG-GGGCS-CB-------CCSTTCSSCBCHHHHHHHHHH
T ss_pred ccCCEEEECCCHHHHHHHHHHHHcCC---cEEEEeCCC-CCcc-ccccc-cc-------ccCCCCCCCCCHHHHHHHHHH
Confidence 45799999999999999999999987 899999983 1110 00000 00 01111100 000001112344
Q ss_pred HHHHCCCeEEeCCcEEEEeCC--C---cEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCC---CcEEEecCHHHHHHH
Q 011351 129 WYKEKGIEMIYQDPVTSIDIE--K---QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADAL 200 (488)
Q Consensus 129 ~~~~~~i~~~~~~~v~~id~~--~---~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~---~gv~~~~~~~~~~~~ 200 (488)
.+++.+++++. .+|++++.+ + ..+.+.+|+++.||+||+|||+.+. .+.+++.+. .++++.. ..
T Consensus 74 ~~~~~gv~~~~-~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~-~~~i~g~~~~~~~~~~~~~------~~ 145 (325)
T 2q7v_A 74 QAEKFGAKVEM-DEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPR-KLGIPGEDNFWGKGVSTCA------TC 145 (325)
T ss_dssp HHHHTTCEEEE-CCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEEC-CCCCTTTTTTBTTTEESCH------HH
T ss_pred HHHHcCCEEEe-eeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcC-CCCCCChhhccCceEEEec------cC
Confidence 56778999987 589999876 3 4677788888999999999999875 344555321 2333321 12
Q ss_pred HHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCC
Q 011351 201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD 280 (488)
Q Consensus 201 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~ 280 (488)
......+++++|||+|.+|+|+|..|.+.+.+|+++++.+.+.. ++.+ ..+.+++.||+++++++++++.. +
T Consensus 146 ~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~---~~~l~~~~gv~i~~~~~v~~i~~--~ 217 (325)
T 2q7v_A 146 DGFFYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA---NKVA---QARAFANPKMKFIWDTAVEEIQG--A 217 (325)
T ss_dssp HGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS---CHHH---HHHHHTCTTEEEECSEEEEEEEE--S
T ss_pred CHHHcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCc---chHH---HHHHHhcCCceEecCCceEEEcc--C
Confidence 22345679999999999999999999999999999999887643 3332 22333446999999999999985 3
Q ss_pred CcEEEEEeC---CCc--EEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcc
Q 011351 281 GRVAAVKLE---DGS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT 354 (488)
Q Consensus 281 ~~v~~v~l~---~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~ 354 (488)
+++..+.+. +|+ ++++|.||+|+|++|+.+++++. +..+ +|+|.||++++|+.|||||+|||+..+.
T Consensus 218 ~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~-~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~------ 290 (325)
T 2q7v_A 218 DSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDT-VSLRDDGYVDVRDEIYTNIPMLFAAGDVSDYIY------ 290 (325)
T ss_dssp SSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCBTTTBCSSTTEEECSTTTCSSC------
T ss_pred CcEEEEEEEECCCCcEEEEEcCEEEEccCCCCChHHHhhh-cccCCCccEecCCCCccCCCCEEEeecccCccH------
Confidence 455566665 675 79999999999999999998876 6654 6889999999999999999999998631
Q ss_pred cccccHHHHHHHHHHHHHHHhc
Q 011351 355 ARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 355 ~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
..+..|..||+.+|.+|..
T Consensus 291 ---~~~~~A~~~g~~aa~~i~~ 309 (325)
T 2q7v_A 291 ---RQLATSVGAGTRAAMMTER 309 (325)
T ss_dssp ---CCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHH
Confidence 1566788999999988864
No 66
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=100.00 E-value=7.4e-36 Score=302.26 Aligned_cols=304 Identities=18% Similarity=0.185 Sum_probs=221.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHH---cCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCH
Q 011351 51 NREFVIVGGGNAAGYAARTFVE---HGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~---~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (488)
+++|||||||+||+++|..|++ .+. +|+|||+++.+.|. |.+.. +... ......+ .....
T Consensus 4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~---~Vtlie~~~~~~~~-~~~~~-~~~g-~~~~~~~-----------~~~l~ 66 (437)
T 3sx6_A 4 SAHVVILGAGTGGMPAAYEMKEALGSGH---EVTLISANDYFQFV-PSNPW-VGVG-WKERDDI-----------AFPIR 66 (437)
T ss_dssp SCEEEEECCSTTHHHHHHHHHHHHGGGS---EEEEECSSSEEECG-GGHHH-HHHT-SSCHHHH-----------EEECH
T ss_pred CCcEEEECCcHHHHHHHHHHhccCCCcC---EEEEEeCCCCCccc-CCccc-cccC-ccCHHHH-----------HHHHH
Confidence 5799999999999999999999 555 89999999876654 32211 1110 0000001 13456
Q ss_pred hHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCC--CcEEEecCHHHHHHHHHhhh
Q 011351 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL--PGVHYIRDVADADALISSLE 205 (488)
Q Consensus 128 ~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~--~gv~~~~~~~~~~~~~~~~~ 205 (488)
+++++.+++++. ++|+.++++.++|++++++++.||+||+|||+.+. .+.++|... .....+.+..++..+.+.+.
T Consensus 67 ~~~~~~gv~~~~-~~v~~id~~~~~V~~~~g~~i~~d~lviAtG~~~~-~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~ 144 (437)
T 3sx6_A 67 HYVERKGIHFIA-QSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLA-FENVPGSDPHEGPVQSICTVDHAERAFAEYQ 144 (437)
T ss_dssp HHHHTTTCEEEC-SCEEEEETTTTEEEETTSCEEECSEEEECCCCEEC-GGGSTTCSTTTSSEECCSSHHHHHHHHHHHH
T ss_pred HHHHHCCCEEEE-eEEEEEEcCCCEEEECCCCEEECCEEEECCCCCcC-cccCCCCCcccCcceecccccHHHHHHHHHH
Confidence 778889999986 69999999999999999999999999999999876 355666543 24455667777766654332
Q ss_pred ---cCCeEEEECCCHH----H--HHHH----HHHHhCCCc-----EEEEecCCcCccccc--CHHHHHHHHHHHHHcCcE
Q 011351 206 ---KAKKVVVVGGGYI----G--MEVA----AAAVGWKLD-----TTIIFPENHLLQRLF--TPSLAQRYEQLYQQNGVK 265 (488)
Q Consensus 206 ---~~~~vvVvG~G~~----g--~e~A----~~l~~~g~~-----v~lv~~~~~~l~~~~--~~~~~~~~~~~l~~~GV~ 265 (488)
..++++|||+|.. | +|+| ..+.+.|.+ |+++++.+.+....+ .++....+.+.+++.||+
T Consensus 145 ~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~gI~ 224 (437)
T 3sx6_A 145 ALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIE 224 (437)
T ss_dssp HHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHTTCE
T ss_pred HHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHCCCE
Confidence 2556788888554 3 7777 556677764 999999987743211 135788899999999999
Q ss_pred EEcCCeEEEEEeCCCCcEEEEEeCC-----CcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCC-CCCCEEE
Q 011351 266 FVKGASIKNLEAGSDGRVAAVKLED-----GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT-RMPGIFA 339 (488)
Q Consensus 266 v~~~~~v~~i~~~~~~~v~~v~l~~-----g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t-~~~~Ifa 339 (488)
+++++++++++.+ +........+ ++++++|.+++++|++++..+.+..++..++|+|.||+++|| ++|||||
T Consensus 225 ~~~~~~v~~v~~~--~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl~~~~G~i~Vd~~l~t~~~~~Ifa 302 (437)
T 3sx6_A 225 AYTNCKVTKVEDN--KMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGLCNPGGFVLVDEHQRSKKYANIFA 302 (437)
T ss_dssp EECSEEEEEEETT--EEEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTTBCTTSCBCBCTTSBBSSCTTEEE
T ss_pred EEcCCEEEEEECC--eEEEEecccCCccccceEEEEeEEEEcCCCcCchhhhccccccCCCCcEEeChhccCCCCCCEEE
Confidence 9999999999732 2111111223 567999999999999988554444677666788999999999 9999999
Q ss_pred EceecccCCccCCcc---cccccHHHHHHHHHHHHHHHhc
Q 011351 340 IGDVAAFPLKMYDRT---ARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 340 ~GD~a~~~~~~~~~~---~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
+|||+..+... +.. ....+...|..||+.+|+||..
T Consensus 303 ~GD~~~~~~~~-~~~~~~~~pk~~~~A~~qg~~aA~ni~~ 341 (437)
T 3sx6_A 303 AGIAIAIPPVE-TTPVPTGAPKTGYMIESMVSAAVHNIKA 341 (437)
T ss_dssp CGGGBCCCCSC-CCSSCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccCCcC-CCcCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999976421 110 1133667799999999999974
No 67
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=100.00 E-value=1.4e-35 Score=286.79 Aligned_cols=285 Identities=22% Similarity=0.301 Sum_probs=207.0
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-CCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-ERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
+||+|||||+||+++|..|++.|+ +|+|||+.....+ ..+... .+................+++
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~---~v~li~~~~gG~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~ 66 (310)
T 1fl2_A 2 YDVLIVGSGPAGAAAAIYSARKGI---RTGLMGERFGGQILDTVDIE------------NYISVPKTEGQKLAGALKVHV 66 (310)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTC---CEEEECSSTTGGGGGCCEEC------------CBTTBSSEEHHHHHHHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCceeccccccc------------cccCcCCCCHHHHHHHHHHHH
Confidence 689999999999999999999887 8999986421100 000000 000000000000011233455
Q ss_pred HHCCCeEEeCCcEEEEeCC-----CcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHHHH
Q 011351 131 KEKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALIS 202 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~-----~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~~ 202 (488)
++.+++++.+++|+.++++ ...+.+++|+++.||+||+|||+.+.. |.+++.. ..++++. ..+..
T Consensus 67 ~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~-~~~~g~~~~~~~~~~~~------~~~~~ 139 (310)
T 1fl2_A 67 DEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRN-MNVPGEDQYRTKGVTYC------PHCDG 139 (310)
T ss_dssp HTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECC-CCCTTTTTTBTTTEESC------HHHHG
T ss_pred HHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCC-CCCCChhhcccceeEEe------ccCcH
Confidence 6779999998899999875 357888888889999999999998753 4445532 1233322 22233
Q ss_pred hhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCC
Q 011351 203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDG 281 (488)
Q Consensus 203 ~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~ 281 (488)
....+++++|||+|.+|+|+|..|.+.+.+|+++++.+.+. +++ .+.+.+++ .||+++++++++++..+ ++
T Consensus 140 ~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~----~~~~~l~~~~gv~v~~~~~v~~i~~~-~~ 211 (310)
T 1fl2_A 140 PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK---ADQ----VLQDKLRSLKNVDIILNAQTTEVKGD-GS 211 (310)
T ss_dssp GGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC---SCH----HHHHHHHTCTTEEEESSEEEEEEEES-SS
T ss_pred hhcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC---ccH----HHHHHHhhCCCeEEecCCceEEEEcC-CC
Confidence 44578999999999999999999999999999999998763 233 34555666 69999999999999854 45
Q ss_pred cEEEEEeCC---Cc--EEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCccc
Q 011351 282 RVAAVKLED---GS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 355 (488)
Q Consensus 282 ~v~~v~l~~---g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~ 355 (488)
++..+.+.+ |+ ++++|.|++|+|++|+++++++. +..+ +|+|.||++++|+.|+|||+|||+..+..
T Consensus 212 ~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~-l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~------ 284 (310)
T 1fl2_A 212 KVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGA-VERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK------ 284 (310)
T ss_dssp SEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSSC------
T ss_pred cEEEEEEEECCCCcEEEEEcCEEEEeeCCccCchHHhcc-ccccCCCcEEcCCCCccCCCCEEEeecccCCcch------
Confidence 665666653 53 68999999999999999888764 6554 68899999999999999999999986532
Q ss_pred ccccHHHHHHHHHHHHHHHhc
Q 011351 356 RVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 356 ~~~~~~~A~~~g~~~a~~i~~ 376 (488)
.+..|..+|+.+|.+|..
T Consensus 285 ---~~~~A~~~g~~aa~~i~~ 302 (310)
T 1fl2_A 285 ---QIIIATGEGAKASLSAFD 302 (310)
T ss_dssp ---CHHHHHHHHHHHHHHHHH
T ss_pred ---hhhhhHhhHHHHHHHHHH
Confidence 455688888888888864
No 68
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=100.00 E-value=1.1e-35 Score=288.85 Aligned_cols=292 Identities=18% Similarity=0.254 Sum_probs=211.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCccc-ccCCCCCCCCHh
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPE 128 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 128 (488)
+++||+|||||+||+++|..|++.|+ +|+|||+.... .. +.... ....++++.. ............
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~g-g~-------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 70 (320)
T 1trb_A 4 KHSKLLILGSGPAGYTAAVYAARANL---QPVLITGMEKG-GQ-------LTTTT--EVENWPGDPNDLTGPLLMERMHE 70 (320)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTC---CCEEECCSSTT-GG-------GGGCS--BCCCSTTCCSSCBHHHHHHHHHH
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCC---cEEEEccCCCC-ce-------Eecch--hhhhCCCCCCCCCHHHHHHHHHH
Confidence 45799999999999999999999987 79999965211 00 00000 0001111110 000001112334
Q ss_pred HHHHCCCeEEeCCcEEEEeCCCcEEE-eCCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHHHHhh
Q 011351 129 WYKEKGIEMIYQDPVTSIDIEKQTLI-TNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSL 204 (488)
Q Consensus 129 ~~~~~~i~~~~~~~v~~id~~~~~v~-~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~~~~ 204 (488)
++++.+++++.+ .|+.++.+.+.++ +.++..+.||+||+|||+.+. .|.+++.. ..++++.. .....+
T Consensus 71 ~~~~~~~~~~~~-~v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~-~~~~~g~~~~~~~~~~~~~------~~~~~~ 142 (320)
T 1trb_A 71 HATKFETEIIFD-HINKVDLQNRPFRLNGDNGEYTCDALIIATGASAR-YLGLPSEEAFKGRGVSACA------TSDGFF 142 (320)
T ss_dssp HHHHTTCEEECC-CEEEEECSSSSEEEEESSCEEEEEEEEECCCEEEC-CCCCHHHHHTBTTTEESCH------HHHGGG
T ss_pred HHHHCCCEEEEe-eeeEEEecCCEEEEEeCCCEEEcCEEEECCCCCcC-CCCCCChHHhCCceeEecc------cCCccc
Confidence 566789999987 5999998765433 567788999999999999865 34444321 12333221 222334
Q ss_pred hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEE
Q 011351 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 284 (488)
Q Consensus 205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~ 284 (488)
..+++++|||+|.+|+|+|..|.+.+.+|+++++.+.+.. ++.+.+.+.+.+++.||++++++++++++.+ ++++.
T Consensus 143 ~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~v~ 218 (320)
T 1trb_A 143 YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA---EKILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVT 218 (320)
T ss_dssp GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCC---CHHHHHHHHHHHHTSSEEEECSCEEEEEEEC-SSSEE
T ss_pred cCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCcccc---CHHHHHHHHHhcccCCeEEEcCceeEEEEcC-CCceE
Confidence 5789999999999999999999999999999999887653 6778888888899999999999999999864 44565
Q ss_pred EEEeCC----C--cEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCC-----CCCCCCEEEEceecccCCccCCc
Q 011351 285 AVKLED----G--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQF-----RTRMPGIFAIGDVAAFPLKMYDR 353 (488)
Q Consensus 285 ~v~l~~----g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~-----~t~~~~Ifa~GD~a~~~~~~~~~ 353 (488)
.+.+.+ | +++++|.||+|+|++|+.++++ .++..++|++.||+++ +|+.|+|||+|||+..+..
T Consensus 219 ~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~~-~~l~~~~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~---- 293 (320)
T 1trb_A 219 GVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFE-GQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR---- 293 (320)
T ss_dssp EEEEECCTTCCCCEEEECSEEEECSCEEESCGGGT-TTSCEETTEECCCCSSSSCTTBCSSTTEEECGGGGCSSSC----
T ss_pred EEEEEeccCCCceEEEEcCEEEEEeCCCCChHHhc-ccccccCceEEECCCcccccccCCCCCEEEcccccCCcch----
Confidence 677654 4 5799999999999999988876 4566557889999987 7899999999999986421
Q ss_pred ccccccHHHHHHHHHHHHHHHhc
Q 011351 354 TARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 354 ~~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
.+..|..+|+.+|.+|..
T Consensus 294 -----~~~~A~~~g~~aa~~i~~ 311 (320)
T 1trb_A 294 -----QAITSAGTGCMAALDAER 311 (320)
T ss_dssp -----CHHHHHHHHHHHHHHHHH
T ss_pred -----hhhhhhccHHHHHHHHHH
Confidence 455678888888888753
No 69
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=100.00 E-value=7.2e-36 Score=292.15 Aligned_cols=295 Identities=18% Similarity=0.248 Sum_probs=208.7
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCccc-ccCCCCCCCC
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQT 126 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 126 (488)
..+++||+|||||+||+++|..|++.|+ +|+|||+++..... +. +.+... .....++++.. ..........
T Consensus 19 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~vie~~~~~~~~-~g---g~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 90 (338)
T 3itj_A 19 SHVHNKVTIIGSGPAAHTAAIYLARAEI---KPILYEGMMANGIA-AG---GQLTTT-TEIENFPGFPDGLTGSELMDRM 90 (338)
T ss_dssp --CEEEEEEECCSHHHHHHHHHHHHTTC---CCEEECCSSBTTBC-TT---CGGGGS-SEECCSTTCTTCEEHHHHHHHH
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEecCCCCCCC-cC---cccccc-hhhcccCCCcccCCHHHHHHHH
Confidence 4456899999999999999999999987 89999997521111 10 111100 00011111111 0001111233
Q ss_pred HhHHHHCCCeEEeCCcEEEEeCCCcEEEe-----CCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHH
Q 011351 127 PEWYKEKGIEMIYQDPVTSIDIEKQTLIT-----NSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADAD 198 (488)
Q Consensus 127 ~~~~~~~~i~~~~~~~v~~id~~~~~v~~-----~~g~~i~yd~lVlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~ 198 (488)
.+++++.+++++.++ |++++.+.+.+.+ .++..+.||+||+|||+.+. .+.+++.. ..++.+. .
T Consensus 91 ~~~~~~~gv~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~-~~~~~g~~~~~~~~~~~~------~ 162 (338)
T 3itj_A 91 REQSTKFGTEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAK-RMHLPGEETYWQKGISAC------A 162 (338)
T ss_dssp HHHHHHTTCEEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEEC-CCCCTTHHHHBTTTEESC------H
T ss_pred HHHHHHcCCEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcC-CCCCCCchhccCccEEEc------h
Confidence 456677899999976 9999988765444 46678999999999999775 34444421 1222221 2
Q ss_pred HHHHh--hhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHc-CcEEEcCCeEEEE
Q 011351 199 ALISS--LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN-GVKFVKGASIKNL 275 (488)
Q Consensus 199 ~~~~~--~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~-GV~v~~~~~v~~i 275 (488)
..... ...+++++|||+|.+|+|+|..|.+.+.+|+++++.+.++. ...+.+.+.+. ||++++++.++++
T Consensus 163 ~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~-------~~~~~~~l~~~~gv~i~~~~~v~~i 235 (338)
T 3itj_A 163 VCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA-------STIMQKRAEKNEKIEILYNTVALEA 235 (338)
T ss_dssp HHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS-------CHHHHHHHHHCTTEEEECSEEEEEE
T ss_pred hcccchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC-------CHHHHHHHHhcCCeEEeecceeEEE
Confidence 22222 34689999999999999999999999999999999987765 22444555555 9999999999999
Q ss_pred EeCCCCcEEEEEeCC-----CcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEe-CCCCCCCCCCEEEEceecccCC
Q 011351 276 EAGSDGRVAAVKLED-----GSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQV-DGQFRTRMPGIFAIGDVAAFPL 348 (488)
Q Consensus 276 ~~~~~~~v~~v~l~~-----g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~v-d~~~~t~~~~Ifa~GD~a~~~~ 348 (488)
+.+ ++.+..|.+.+ ++++++|.||+|+|++|+..+++. ++..+ +|++.| |++++|+.|||||+|||+..+.
T Consensus 236 ~~~-~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~l~~~~~G~i~v~~~~~~t~~~~vya~GD~~~~~~ 313 (338)
T 3itj_A 236 KGD-GKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAG-QVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKY 313 (338)
T ss_dssp EES-SSSEEEEEEEETTTTEEEEEECSEEEECSCEEECCGGGBT-TBCBCTTSCBCCCTTSSBCSSTTEEECGGGGCSSC
T ss_pred Ecc-cCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChhHhhC-ceEecCCCcEEEcCcccccCCCCEEEeeccCCCCc
Confidence 865 45566677765 467999999999999999988876 78765 677874 8899999999999999998432
Q ss_pred ccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351 349 KMYDRTARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 349 ~~~~~~~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
..+..|..+|+.+|.+|..
T Consensus 314 ---------~~~~~A~~~g~~aa~~i~~ 332 (338)
T 3itj_A 314 ---------RQAITSAGSGCMAALDAEK 332 (338)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHH
T ss_pred ---------cceeeehhhhHHHHHHHHH
Confidence 2556788889998888864
No 70
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=100.00 E-value=4.9e-35 Score=283.32 Aligned_cols=289 Identities=21% Similarity=0.217 Sum_probs=206.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEE-EcCCCCCCCCCCCCCccccCCCCCCCCCCCCcc-cccCCCCCCCCH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCI-VSKEAYAPYERPALTKGYLFPLDKKPARLPGFH-TCVGSGGERQTP 127 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~l-ie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 127 (488)
.++||+|||||+||++||..|++.|+ +|+| +|++.. ... +... .....++++. ............
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~li~e~~~~-gG~-------~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 69 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATRGGL---KNVVMFEKGMP-GGQ-------ITSS--SEIENYPGVAQVMDGISFMAPWS 69 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHTC---SCEEEECSSST-TGG-------GGGC--SCBCCSTTCCSCBCHHHHHHHHH
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCC---CeEEEEeCCCC-Cce-------eeee--ceeccCCCCCCCCCHHHHHHHHH
Confidence 46899999999999999999999987 7999 998422 110 0000 0000111111 000001112234
Q ss_pred hHHHHCCCeEEeCCcEEEEeCCC----cEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCC---CcEEEecCHHHHHHH
Q 011351 128 EWYKEKGIEMIYQDPVTSIDIEK----QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADAL 200 (488)
Q Consensus 128 ~~~~~~~i~~~~~~~v~~id~~~----~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~---~gv~~~~~~~~~~~~ 200 (488)
+++++.+++++.+ +|..+ ++. ..+.+..+.++.||+||+|||+.+. .|..++... .++++. ...
T Consensus 70 ~~~~~~~v~~~~~-~v~~i-~~~~~~~~~v~~~~~~~~~~d~lvlAtG~~~~-~~~~~g~~~~~~~~~~~~------~~~ 140 (315)
T 3r9u_A 70 EQCMRFGLKHEMV-GVEQI-LKNSDGSFTIKLEGGKTELAKAVIVCTGSAPK-KAGFKGEDEFFGKGVSTC------ATC 140 (315)
T ss_dssp HHHTTTCCEEECC-CEEEE-EECTTSCEEEEETTSCEEEEEEEEECCCEEEC-CCCCBTTTTTBTTTEESC------HHH
T ss_pred HHHHHcCcEEEEE-EEEEE-ecCCCCcEEEEEecCCEEEeCEEEEeeCCCCC-CCCCCChhhcCCCeEEee------ecc
Confidence 4556679999986 89888 444 3421433328999999999999775 455565433 333322 222
Q ss_pred HHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCC
Q 011351 201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD 280 (488)
Q Consensus 201 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~ 280 (488)
......+++++|+|+|.+|+|+|..|.+.+.+|+++++.+.+.. ++. .+.+.+++.||++++++.+++++.+ +
T Consensus 141 ~~~~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~---~~~---~~~~~~~~~gv~~~~~~~v~~i~~~-~ 213 (315)
T 3r9u_A 141 DGFFYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRA---APS---TVEKVKKNEKIELITSASVDEVYGD-K 213 (315)
T ss_dssp HGGGGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBS---CHH---HHHHHHHCTTEEEECSCEEEEEEEE-T
T ss_pred cccccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCC---CHH---HHHHHHhcCCeEEEeCcEEEEEEcC-C
Confidence 33345789999999999999999999999999999999987732 333 3445567889999999999999864 4
Q ss_pred CcEEEEEeC--CCc--EEEcCEEEEeecCccCChhhhh---cC-Cccc-CCCEEeCCCCCCCCCCEEEEceecccCCccC
Q 011351 281 GRVAAVKLE--DGS--TIDADTIVIGIGAKPTVSPFER---VG-LNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY 351 (488)
Q Consensus 281 ~~v~~v~l~--~g~--~i~~D~vi~a~G~~p~~~~~~~---~g-l~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~ 351 (488)
+++..+.+. +|+ ++++|.||+++|++|+..+++. +| +..+ +|+|.||++++|+.|||||+|||+..+.
T Consensus 214 ~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~~~t~~~~v~a~GD~~~~~~--- 290 (315)
T 3r9u_A 214 MGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGLFAAGDLRKDAP--- 290 (315)
T ss_dssp TEEEEEEEECTTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECGGGBTTCC---
T ss_pred CcEEEEEEEcCCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCCcccCCCCEEEeecccCCch---
Confidence 455566665 776 7999999999999999988766 54 7765 5889999999999999999999996432
Q ss_pred CcccccccHHHHHHHHHHHHHHHhc
Q 011351 352 DRTARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 352 ~~~~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
..+..|..+|+.+|.+|..
T Consensus 291 ------~~~~~A~~~g~~aa~~i~~ 309 (315)
T 3r9u_A 291 ------KQVICAAGDGAVAALSAMA 309 (315)
T ss_dssp ------CCHHHHHHHHHHHHHHHHH
T ss_pred ------hhhhhHHhhHHHHHHHHHH
Confidence 2566788999999988863
No 71
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=100.00 E-value=1.2e-35 Score=286.47 Aligned_cols=285 Identities=14% Similarity=0.125 Sum_probs=195.5
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCH
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (488)
.|+++||+||||||||++||.+|++.|+ +|+|||++.....- .....++... ++. ...+......
T Consensus 3 ~M~~yDVvIIGaGpAGlsAA~~lar~g~---~v~lie~~~~gg~~-~~~~~~~~~~--------~~~---~~~~~~~~~~ 67 (304)
T 4fk1_A 3 AMKYIDCAVIGAGPAGLNASLVLGRARK---QIALFDNNTNRNRV-TQNSHGFITR--------DGI---KPEEFKEIGL 67 (304)
T ss_dssp ---CEEEEEECCSHHHHHHHHHHHHTTC---CEEEEECSCCGGGG-SSCBCCSTTC--------TTB---CHHHHHHHHH
T ss_pred CCCCcCEEEECCCHHHHHHHHHHHHCCC---CEEEEeCCCCCCee-eeecCCccCC--------CCC---CHHHHHHHHH
Confidence 4667999999999999999999999987 89999987431100 0000001000 000 0000000111
Q ss_pred hHHHHCC-CeEEeCCcEEEEeCC---CcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCC---CcEEEecCHHHHHHH
Q 011351 128 EWYKEKG-IEMIYQDPVTSIDIE---KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADAL 200 (488)
Q Consensus 128 ~~~~~~~-i~~~~~~~v~~id~~---~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~---~gv~~~~~~~~~~~~ 200 (488)
+...+++ +.+.. ..+..++.. .+++.+.+|+++.||+||||||+.|+ .|+++|.+. .++.+ +...
T Consensus 68 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~-~p~i~G~~~~~~~~v~~------~~~~ 139 (304)
T 4fk1_A 68 NEVMKYPSVHYYE-KTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEE-FPSIPNVREYYGKSLFS------CPYC 139 (304)
T ss_dssp HHHTTSTTEEEEE-CCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEE-CCSCTTHHHHBTTTEES------CHHH
T ss_pred HHHHhcCCEEEEe-eEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCccc-cccccCccccccceeee------cccc
Confidence 2223333 45554 456555432 35788899999999999999999886 455555221 12222 2223
Q ss_pred HHhhhcCCeEEEECCCH-HHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCC
Q 011351 201 ISSLEKAKKVVVVGGGY-IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS 279 (488)
Q Consensus 201 ~~~~~~~~~vvVvG~G~-~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~ 279 (488)
......+++++|||+|. .+.|+|..+...+.+|+++.+.+.+.. .+.+.|++.|++++.+. ++.+.. +
T Consensus 140 ~~~~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~~~---------~~~~~l~~~g~~~~~~~-v~~~~~-~ 208 (304)
T 4fk1_A 140 DGWELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNELSQ---------TIMDELSNKNIPVITES-IRTLQG-E 208 (304)
T ss_dssp HSGGGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCCCH---------HHHHHHHTTTCCEECSC-EEEEES-G
T ss_pred chhHhcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccccchh---------hhhhhhhccceeEeeee-EEEeec-C
Confidence 33345677888888876 467899999899999999988765432 34566888999999874 777763 4
Q ss_pred CCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccc
Q 011351 280 DGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE 358 (488)
Q Consensus 280 ~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~ 358 (488)
++.+..+.+++|+++++|.+++++|.+|+..+++++|++.+ +|+|.||+++|||+|||||+|||+..+..
T Consensus 209 ~~~~~~v~~~~g~~i~~~~~vi~~g~~~~~~~~~~~g~~~~~~G~I~vd~~~~Ts~p~IyA~GDv~~~~~~--------- 279 (304)
T 4fk1_A 209 GGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFGRTSEKNIYLAGETTTQGPS--------- 279 (304)
T ss_dssp GGCCCEEEETTSCEECCCEEEECCEEECSSCHHHHTTCCCCTTSSSCSSTTCBCSSTTEEECSHHHHTSCC---------
T ss_pred CCeeeeeeccccceeeecceeeeeccccCChhhhhcCeEECCCCCEEECcCCccCCCCEEEEeccCCCcch---------
Confidence 56667899999999999999998888887789999999876 56799999999999999999999975432
Q ss_pred cHHHHHHHHHHHHHHHh
Q 011351 359 HVDHARQSAQHCIKALL 375 (488)
Q Consensus 359 ~~~~A~~~g~~~a~~i~ 375 (488)
.+..|..+|+.||.+|.
T Consensus 280 ~~~~A~~~G~~AA~~i~ 296 (304)
T 4fk1_A 280 SLIIAASQGNKAAIAIN 296 (304)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34557778888887764
No 72
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=100.00 E-value=4.4e-35 Score=283.38 Aligned_cols=288 Identities=18% Similarity=0.233 Sum_probs=207.7
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCccc-ccCCCCCCCCHhHH
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPEWY 130 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 130 (488)
+||+|||||+||+++|..|++.|+. +|+|||++..... ..... .. ..++++.. ...........+++
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~--~v~lie~~~~gg~--~~~~~-~~-------~~~~~~~~~~~~~~~~~~l~~~~ 69 (311)
T 2q0l_A 2 IDCAIIGGGPAGLSAGLYATRGGVK--NAVLFEKGMPGGQ--ITGSS-EI-------ENYPGVKEVVSGLDFMQPWQEQC 69 (311)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCS--SEEEECSSSTTCG--GGGCS-CB-------CCSTTCCSCBCHHHHHHHHHHHH
T ss_pred ceEEEECccHHHHHHHHHHHHCCCC--cEEEEcCCCCCcc--ccccc-cc-------ccCCCCcccCCHHHHHHHHHHHH
Confidence 6899999999999999999998762 7999998632110 00000 00 00111100 00000011223445
Q ss_pred HHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCC---CcEEEecCHHHHHHHHHhhh
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSLE 205 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~---~gv~~~~~~~~~~~~~~~~~ 205 (488)
++.+++++. ++|+.++.+.+ .+.+.+++++.||+||+|||+.+. .|.+++... ++++++. .......
T Consensus 70 ~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~-~~~~~g~~~~~~~~~~~~~------~~~~~~~ 141 (311)
T 2q0l_A 70 FRFGLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPK-RTGIKGESEYWGKGVSTCA------TCDGFFY 141 (311)
T ss_dssp HTTSCEEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEEC-CCCCBTHHHHBTTTEESCH------HHHGGGG
T ss_pred HHcCCEEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCC-CCCCCChhhccCCcEEEee------cCChhhc
Confidence 667999988 78999987766 677788888999999999998775 344444211 3343322 1222345
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHH-HcCcEEEcCCeEEEEEeCCCCcEE
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ-QNGVKFVKGASIKNLEAGSDGRVA 284 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~-~~GV~v~~~~~v~~i~~~~~~~v~ 284 (488)
.+++++|||+|.+|+|+|..|.+.+.+|+++++.+.+. .++. +.+.+. +.||++++++.++++..+ ++.+.
T Consensus 142 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~----~~~~l~~~~gv~v~~~~~v~~i~~~-~~~v~ 213 (311)
T 2q0l_A 142 KNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR---CAPI----TLEHAKNNDKIEFLTPYVVEEIKGD-ASGVS 213 (311)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC---SCHH----HHHHHHTCTTEEEETTEEEEEEEEE-TTEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC---CCHH----HHHHHhhCCCeEEEeCCEEEEEECC-CCcEe
Confidence 67999999999999999999999999999999988764 2443 333444 479999999999999854 34444
Q ss_pred EEEeC---CCc--EEEcCEEEEeecCccCChhhhhcC----Cccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcc
Q 011351 285 AVKLE---DGS--TIDADTIVIGIGAKPTVSPFERVG----LNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT 354 (488)
Q Consensus 285 ~v~l~---~g~--~i~~D~vi~a~G~~p~~~~~~~~g----l~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~ 354 (488)
.+.+. +|+ ++++|.||+|+|++|++++++..+ +..+ +|+|.||++++|+.|||||+|||+..+.
T Consensus 214 ~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~------ 287 (311)
T 2q0l_A 214 SLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIRIFAP------ 287 (311)
T ss_dssp EEEEEETTTCCEEEEECSEEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCC------
T ss_pred EEEEEecCCCceEEEecCEEEEEecCccChhhhhcccccceeEeccCCCEEeCCccccCCCCeEEcccccCcch------
Confidence 56665 675 799999999999999999988775 7654 6889999999999999999999998631
Q ss_pred cccccHHHHHHHHHHHHHHHhc
Q 011351 355 ARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 355 ~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
..+..|..||+.+|.+|..
T Consensus 288 ---~~~~~A~~~g~~aa~~i~~ 306 (311)
T 2q0l_A 288 ---KQVVCAASDGATAALSVIS 306 (311)
T ss_dssp ---CCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhHHHHHHHHHH
Confidence 2566789999999998864
No 73
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=100.00 E-value=2.3e-34 Score=281.13 Aligned_cols=300 Identities=19% Similarity=0.251 Sum_probs=203.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCccc-ccCCCCCCCCHh
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPE 128 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 128 (488)
++++|+|||||++|+++|..|++.|+ +|+|||+....... + ...+.... ....++++.. .........+.+
T Consensus 7 ~~~~vvIIG~G~aGl~~A~~l~~~g~---~v~lie~~~~~~~~-~--gg~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~ 78 (333)
T 1vdc_A 7 HNTRLCIVGSGPAAHTAAIYAARAEL---KPLLFEGWMANDIA-P--GGQLTTTT--DVENFPGFPEGILGVELTDKFRK 78 (333)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC---CCEEECCSSBTTBC-T--TCGGGGCS--EECCSTTCTTCEEHHHHHHHHHH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeccCccccC-C--Cceeeecc--ccccCCCCccCCCHHHHHHHHHH
Confidence 45799999999999999999999987 89999982100000 0 00010000 0001111110 000001112334
Q ss_pred HHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCC-CcEEEecCHHHHHHHHHhh-
Q 011351 129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL-PGVHYIRDVADADALISSL- 204 (488)
Q Consensus 129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~-~gv~~~~~~~~~~~~~~~~- 204 (488)
++++.+++++.++ |+.++.+.+ +|++ ++..+.||+||+|||+.+.. +.+++... .+.+..+.+..........
T Consensus 79 ~~~~~gv~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (333)
T 1vdc_A 79 QSERFGTTIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKR-LSFVGSGEVLGGFWNRGISACAVCDGAAP 155 (333)
T ss_dssp HHHHTTCEEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEECC-CCCBTCSSSSSCCBTTTEESCHHHHTTSG
T ss_pred HHHHCCCEEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcCC-CCCCCccccccccccCcEEEeccCccchh
Confidence 5667899999874 889987655 6666 77789999999999998763 44555432 1111111111111222222
Q ss_pred -hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCC-c
Q 011351 205 -EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-R 282 (488)
Q Consensus 205 -~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~-~ 282 (488)
..+++++|||+|.+|+|+|..|.+.+.+|+++++.+.+.. .+.+ ..+.+++.||++++++++++++.++++ +
T Consensus 156 ~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~---~~~~---~~~~~~~~gv~i~~~~~v~~i~~~~~~~~ 229 (333)
T 1vdc_A 156 IFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---SKIM---QQRALSNPKIDVIWNSSVVEAYGDGERDV 229 (333)
T ss_dssp GGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHHH---HHHHHTCTTEEEECSEEEEEEEESSSSSS
T ss_pred hcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc---cHHH---HHHHHhCCCeeEecCCceEEEeCCCCccc
Confidence 5689999999999999999999999999999999987643 2222 224456789999999999999864321 5
Q ss_pred EEEEEeC---CC--cEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCC-CCCCCCCEEEEceecccCCccCCccc
Q 011351 283 VAAVKLE---DG--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRTA 355 (488)
Q Consensus 283 v~~v~l~---~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~-~~t~~~~Ifa~GD~a~~~~~~~~~~~ 355 (488)
+..+.+. +| +++++|.||+|+|++|+.++++ .++..+ +|+|.||++ ++|+.|+|||+|||+..+..
T Consensus 230 v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~l~~~~~G~i~vd~~~~~t~~~~vya~GD~~~~~~~------ 302 (333)
T 1vdc_A 230 LGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLD-GGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYR------ 302 (333)
T ss_dssp EEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGT-TSSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSCC------
T ss_pred eeeEEEEecCCCceEEEecCEEEEEeCCccchHHhh-ccccccCCCCEEechhhcccCCCCEEEeeeccCCCch------
Confidence 5556664 45 5799999999999999998876 467655 688999997 58999999999999986421
Q ss_pred ccccHHHHHHHHHHHHHHHhc
Q 011351 356 RVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 356 ~~~~~~~A~~~g~~~a~~i~~ 376 (488)
.+..|..+|+.+|.+|..
T Consensus 303 ---~~~~A~~~g~~aa~~i~~ 320 (333)
T 1vdc_A 303 ---QAITAAGTGCMAALDAEH 320 (333)
T ss_dssp ---CHHHHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHhHHHHHHHHHH
Confidence 455677888888887753
No 74
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=100.00 E-value=2.6e-34 Score=283.10 Aligned_cols=300 Identities=16% Similarity=0.225 Sum_probs=195.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccC-------CCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVG-------SGGE 123 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 123 (488)
+++|+|||||++|+++|..|++.|+ +|+|||+++.......................++++..... ....
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~~g~---~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRRSGL---SYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVL 79 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHSSC---CEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHH
Confidence 4799999999999999999999987 89999998753210000000000000000000111100000 0001
Q ss_pred CCCHhHHHHCCCeEEeCCcEEEEeCCCcE---EEeCCCcEEEeccEEeccCCCCC-cCCCCCCCC-CCcE-EEecCHHHH
Q 011351 124 RQTPEWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTAS-RFPEKIGGY-LPGV-HYIRDVADA 197 (488)
Q Consensus 124 ~~~~~~~~~~~i~~~~~~~v~~id~~~~~---v~~~~g~~i~yd~lVlAtG~~~~-~~~~~~g~~-~~gv-~~~~~~~~~ 197 (488)
....+++++.+++++.+++|++++.+++. |++.++ ++.||+||+|||.... ..|.++|.. ..+. .+.....+
T Consensus 80 ~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~~~~~~~~~- 157 (357)
T 4a9w_A 80 AYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYST- 157 (357)
T ss_dssp HHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGGBCCCCCTTGGGCCSEEEEGGGCCC-
T ss_pred HHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCCCCCCCCCCccccCCcEEEeccCCC-
Confidence 12234456779999999999999987765 667777 7999999999996432 134444432 1221 11111111
Q ss_pred HHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC-CcCccccc-CHHHHHHHHHHHH---------------
Q 011351 198 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHLLQRLF-TPSLAQRYEQLYQ--------------- 260 (488)
Q Consensus 198 ~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~-~~~l~~~~-~~~~~~~~~~~l~--------------- 260 (488)
.....+++++|||+|.+|+|+|..|.+.+ +|+++.+. +.+++..+ +..+.+.+.+.+.
T Consensus 158 ----~~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (357)
T 4a9w_A 158 ----PAPFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGGF 232 (357)
T ss_dssp ----SGGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC---------------------
T ss_pred ----hhhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCCcccccc
Confidence 11236799999999999999999999998 69999988 55555432 2333332222222
Q ss_pred -------------HcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeC
Q 011351 261 -------------QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVD 327 (488)
Q Consensus 261 -------------~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd 327 (488)
+.|+ +..+..+++++.. .+.+++|+++++|.||+|+|++|++++++++++..++|+|.||
T Consensus 233 ~~~~~~~~~~~~~~~g~-i~~~~~v~~~~~~------~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~G~i~vd 305 (357)
T 4a9w_A 233 GDIVMVPPVLDARARGV-LAAVPPPARFSPT------GMQWADGTERAFDAVIWCTGFRPALSHLKGLDLVTPQGQVEVD 305 (357)
T ss_dssp -CBCCCHHHHHHHHTTC-CCEECCCSEEETT------EEECTTSCEEECSEEEECCCBCCCCGGGTTTTCBCTTSCBCBC
T ss_pred cCcccChhHHHHHhcCc-eEEecCcceEeCC------eeEECCCCEecCCEEEECCCcCCCCcccCcccccCCCCCcccc
Confidence 3444 5555667777632 5889999999999999999999999999999999667889999
Q ss_pred CC--CCCCCCCEEEEc--eecccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351 328 GQ--FRTRMPGIFAIG--DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 328 ~~--~~t~~~~Ifa~G--D~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
++ ++|+.|||||+| ||+..+.. .+..|..+|+.+|++|..
T Consensus 306 ~~~l~~t~~~~vya~Gd~d~~~~~~~---------~~~~A~~~g~~~a~~i~~ 349 (357)
T 4a9w_A 306 GSGLRALAVPSVWLLGYGDWNGMASA---------TLIGVTRYAREAVRQVTA 349 (357)
T ss_dssp TTSCBBSSCTTEEECSSCGGGSTTCS---------STTTHHHHHHHHHHHHHH
T ss_pred CCcccCCCCCCeEEeccccccccchh---------hhhhhHHHHHHHHHHHHH
Confidence 99 899999999999 55552211 223377788888888764
No 75
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=100.00 E-value=6.6e-34 Score=278.10 Aligned_cols=288 Identities=18% Similarity=0.301 Sum_probs=201.2
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCccc-ccCCCCCCCCH
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTP 127 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 127 (488)
++++||+|||||+||+++|..|++.|+ +|+|||+..... .+.... ....++++.. ...........
T Consensus 12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~gg--------~~~~~~--~~~~~~~~~~~~~~~~~~~~l~ 78 (335)
T 2a87_A 12 HPVRDVIVIGSGPAGYTAALYAARAQL---APLVFEGTSFGG--------ALMTTT--DVENYPGFRNGITGPELMDEMR 78 (335)
T ss_dssp CCCEEEEEECCHHHHHHHHHHHHHTTC---CCEEECCSSCSC--------GGGSCS--CBCCSTTCTTCBCHHHHHHHHH
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCCC--------ceeccc--hhhhcCCCCCCCCHHHHHHHHH
Confidence 456899999999999999999999987 899999752110 011000 0001111110 00000112233
Q ss_pred hHHHHCCCeEEeCCcEEEEeCCC-cEE-EeCCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHHHH
Q 011351 128 EWYKEKGIEMIYQDPVTSIDIEK-QTL-ITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALIS 202 (488)
Q Consensus 128 ~~~~~~~i~~~~~~~v~~id~~~-~~v-~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~~ 202 (488)
+++++.+++++.++ |++++..+ .++ .+.+++++.||+||+|||+.+. .|.+++.. ..+++.. .....
T Consensus 79 ~~~~~~~v~~~~~~-v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~-~~~i~g~~~~~~~~~~~~------~~~~~ 150 (335)
T 2a87_A 79 EQALRFGADLRMED-VESVSLHGPLKSVVTADGQTHRARAVILAMGAAAR-YLQVPGEQELLGRGVSSC------ATCDG 150 (335)
T ss_dssp HHHHHTTCEEECCC-EEEEECSSSSEEEEETTSCEEEEEEEEECCCEEEC-CCCCTHHHHTBTTTEESC------HHHHG
T ss_pred HHHHHcCCEEEEee-EEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCcc-CCCCCchHhccCCceEEe------eccch
Confidence 45667899999874 99998732 467 7788888999999999999775 34444421 1223322 12223
Q ss_pred hhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCc
Q 011351 203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR 282 (488)
Q Consensus 203 ~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~ 282 (488)
.+..+++++|||+|.+|+|+|..|.+.+.+|+++++.+.+.. .+.+ ..+.+++.||++++++++++++.+ +.
T Consensus 151 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~---~~~~---~~~~~~~~gV~v~~~~~v~~i~~~--~~ 222 (335)
T 2a87_A 151 FFFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA---SKIM---LDRARNNDKIRFLTNHTVVAVDGD--TT 222 (335)
T ss_dssp GGGTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS---CTTH---HHHHHHCTTEEEECSEEEEEEECS--SS
T ss_pred hhcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc---cHHH---HHHHhccCCcEEEeCceeEEEecC--Cc
Confidence 345689999999999999999999999999999999887653 2222 124456789999999999999854 23
Q ss_pred EEEEEeC---CC--cEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCC-CCCCCCCEEEEceecccCCccCCccc
Q 011351 283 VAAVKLE---DG--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRTA 355 (488)
Q Consensus 283 v~~v~l~---~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~-~~t~~~~Ifa~GD~a~~~~~~~~~~~ 355 (488)
+..+.+. +| +++++|.||+|+|++|++++++ .++..+ +|+|.||++ ++|+.|||||+|||+..+..
T Consensus 223 ~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~l~~~~~G~i~vd~~~~~t~~~~iya~GD~~~~~~~------ 295 (335)
T 2a87_A 223 VTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVR-EAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTYR------ 295 (335)
T ss_dssp CCEEEEEEETTSCCEEECCSCEEECSCEEECCTTTB-TTBCBCTTSCBCCSTTSSBCSSTTEEECGGGTCCSCC------
T ss_pred EeEEEEEEcCCCceEEeecCEEEEccCCccChhHhh-cccccCCCccEEeCCCCCccCCCCEEEeeecCCccHH------
Confidence 3344443 45 5799999999999999988876 466654 688999985 68999999999999986421
Q ss_pred ccccHHHHHHHHHHHHHHHh
Q 011351 356 RVEHVDHARQSAQHCIKALL 375 (488)
Q Consensus 356 ~~~~~~~A~~~g~~~a~~i~ 375 (488)
.+..|..+|+.+|.++.
T Consensus 296 ---~~~~A~~~g~~aA~~i~ 312 (335)
T 2a87_A 296 ---QAVTAAGSGCAAAIDAE 312 (335)
T ss_dssp ---CHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHhHHHHHHHHH
Confidence 44557778888887775
No 76
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=100.00 E-value=1.2e-33 Score=279.90 Aligned_cols=307 Identities=18% Similarity=0.217 Sum_probs=206.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC------CCCCCCCCCCcccc---CCCCCC----CCCCCCccc-
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA------YAPYERPALTKGYL---FPLDKK----PARLPGFHT- 116 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~------~~~~~~~~l~~~~~---~~~~~~----~~~~~~~~~- 116 (488)
+++|+|||||+||+++|..|++.|+ . +|+|||+++ ..+.....+...+. +..... ....+.+..
T Consensus 4 ~~~vvIIGaG~aGl~aA~~l~~~g~-~-~v~lie~~~~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 81 (369)
T 3d1c_A 4 HHKVAIIGAGAAGIGMAITLKDFGI-T-DVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFN 81 (369)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC-C-CEEEECSSSTTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHC
T ss_pred cCcEEEECcCHHHHHHHHHHHHcCC-C-cEEEEecCCCCCccccCcccccccCcchhcccCCchhhhhcccccccccccc
Confidence 5799999999999999999999875 2 799999986 11110000000000 000000 000000000
Q ss_pred ---ccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEe
Q 011351 117 ---CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYI 191 (488)
Q Consensus 117 ---~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~ 191 (488)
............++++.+++++.+++|+++++++ ..|.+.++ ++.||+||+|||+.+. |.+++ ..+.+.
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~--p~ip~---~~~~~~ 155 (369)
T 3d1c_A 82 EEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNF--PKKPF---KYGIHY 155 (369)
T ss_dssp CSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTS--BCCCS---SSCEEG
T ss_pred ccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCc--cCCCC---Cceech
Confidence 0000000112334466899999998999998763 46777776 5899999999998764 33333 222332
Q ss_pred cCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc------ccCHHHHHHHHHHHHHcC-c
Q 011351 192 RDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------LFTPSLAQRYEQLYQQNG-V 264 (488)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~------~~~~~~~~~~~~~l~~~G-V 264 (488)
..+.+.. ...+++++|||+|.+|+|+|..|.+.+.+|+++++.+.+++. .+++...+.+.+.+++.| |
T Consensus 156 ~~~~~~~-----~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~v 230 (369)
T 3d1c_A 156 SEIEDFD-----NFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARI 230 (369)
T ss_dssp GGCSCGG-----GSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHHHHTTCCE
T ss_pred hhcCChh-----hcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCcE
Confidence 2211111 125689999999999999999999999999999999887742 245677788999999997 9
Q ss_pred EEEcCCeEEEEEeCCCCcEEEEEeCCCcEEE-cCEEEEeecCccCChhhhhcCCcccCCCEEeCCC-CCCCCCCEEEEce
Q 011351 265 KFVKGASIKNLEAGSDGRVAAVKLEDGSTID-ADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQ-FRTRMPGIFAIGD 342 (488)
Q Consensus 265 ~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~-~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~-~~t~~~~Ifa~GD 342 (488)
+++++++|++++..+ +. ..+.+.+|+++. +|.||+|+|++|+.+++.+.++..++|++.||++ ++|+.|||||+||
T Consensus 231 ~~~~~~~v~~i~~~~-~~-~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~~~~~~~~~g~i~v~~~~~~t~~~~v~a~GD 308 (369)
T 3d1c_A 231 EMNVHYTVKDIDFNN-GQ-YHISFDSGQSVHTPHEPILATGFDATKNPIVQQLFVTTNQDIKLTTHDESTRYPNIFMIGA 308 (369)
T ss_dssp EEECSCCEEEEEEET-TE-EEEEESSSCCEEESSCCEECCCBCGGGSHHHHHHSCCTTSCCCBCTTSBBSSSTTEEECST
T ss_pred EEecCcEEEEEEecC-Cc-eEEEecCCeEeccCCceEEeeccCCccchhhhhhccCCCCCEEechhhcccCCCCeEEecc
Confidence 999999999996432 22 357788888775 6999999999999877766556544677999985 6789999999999
Q ss_pred ecccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 011351 343 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ 378 (488)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~ 378 (488)
|+..+....+ .+..+.+||+.+|++|.+..
T Consensus 309 ~~~~~~~~~~------~~~~~~~~a~~~a~~l~~~~ 338 (369)
T 3d1c_A 309 TVENDNAKLC------YIYKFRARFAVLAHLLTQRE 338 (369)
T ss_dssp TCCCSSCCCC------SHHHHGGGHHHHHHHHHHHT
T ss_pred ccccCCeeEE------EEehhhHHHHHHHHHHhccc
Confidence 9987654322 34457888999999998643
No 77
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=100.00 E-value=2.7e-33 Score=288.85 Aligned_cols=288 Identities=22% Similarity=0.301 Sum_probs=209.9
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-CCCCCccccCCCCCCCCCCCCcccccCCCCCCCCH
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-RPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (488)
+..+||+|||||+||++||.+|++.|+ +|+|||+.....+. .... ..+.++....+........
T Consensus 210 ~~~~dVvIIGgG~AGl~aA~~la~~G~---~v~lie~~~GG~~~~~~~~------------~~~~~~~~~~~~~l~~~l~ 274 (521)
T 1hyu_A 210 RDAYDVLIVGSGPAGAAAAVYSARKGI---RTGLMGERFGGQVLDTVDI------------ENYISVPKTEGQKLAGALK 274 (521)
T ss_dssp SCCEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSTTGGGTTCSCB------------CCBTTBSSBCHHHHHHHHH
T ss_pred cCcccEEEECCcHHHHHHHHHHHhCCC---eEEEEECCCCCcccccccc------------cccCCCCCCCHHHHHHHHH
Confidence 346799999999999999999999987 89999864211000 0000 0011110000000111234
Q ss_pred hHHHHCCCeEEeCCcEEEEeCC-----CcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHH
Q 011351 128 EWYKEKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADA 199 (488)
Q Consensus 128 ~~~~~~~i~~~~~~~v~~id~~-----~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~ 199 (488)
+.+++.+++++.+++|+.++++ ...|++++|+++.||+||+|||+.+.. +.++|.. ..++++....
T Consensus 275 ~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~-~~ipG~~~~~~~~v~~~~~~----- 348 (521)
T 1hyu_A 275 AHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRN-MNVPGEDQYRTKGVTYCPHC----- 348 (521)
T ss_dssp HHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECC-CCCTTTTTTTTTTEECCTTC-----
T ss_pred HHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCC-CCCCChhhhcCceEEEeecC-----
Confidence 4556789999998899999864 457888889889999999999998763 4455532 1334433211
Q ss_pred HHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHH-cCcEEEcCCeEEEEEeC
Q 011351 200 LISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAG 278 (488)
Q Consensus 200 ~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~ 278 (488)
......+++++|||+|.+|+|+|..|+..+.+|+++++.+.+.. + ..+.+.+++ .||++++++.++++..+
T Consensus 349 -~~~~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~---~----~~l~~~l~~~~gV~v~~~~~v~~i~~~ 420 (521)
T 1hyu_A 349 -DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---D----QVLQDKVRSLKNVDIILNAQTTEVKGD 420 (521)
T ss_dssp -CGGGGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS---C----HHHHHHHTTCTTEEEECSEEEEEEEEC
T ss_pred -chhhcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc---C----HHHHHHHhcCCCcEEEeCCEEEEEEcC
Confidence 12234689999999999999999999999999999999987764 2 245566666 69999999999999853
Q ss_pred CCCcEEEEEeCC---Cc--EEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCC
Q 011351 279 SDGRVAAVKLED---GS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYD 352 (488)
Q Consensus 279 ~~~~v~~v~l~~---g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~ 352 (488)
++++..+.+.+ |+ ++++|.|++++|.+|+++++++ .+..+ +|+|.||++++|+.|||||+|||+..+..
T Consensus 421 -~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~-~l~~~~~G~I~Vd~~~~ts~p~VfA~GD~~~~~~~--- 495 (521)
T 1hyu_A 421 -GSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEG-ALERNRMGEIIIDAKCETSVKGVFAAGDCTTVPYK--- 495 (521)
T ss_dssp -SSSEEEEEEEETTTCCEEEEECSEEEECCCEEESCGGGTT-TSCBCTTSCBCCCTTCBCSSTTEEECSTTBCCSSC---
T ss_pred -CCcEEEEEEEeCCCCceEEEEcCEEEECcCCCCCchHHhh-hhccCCCCcEEeCCCCCCCCCCEEEeecccCCCcc---
Confidence 45665666653 54 6899999999999999988876 36554 68899999999999999999999986532
Q ss_pred cccccccHHHHHHHHHHHHHHHhc
Q 011351 353 RTARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 353 ~~~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
.+..|..+|+.+|.++..
T Consensus 496 ------~~~~A~~~g~~aa~~i~~ 513 (521)
T 1hyu_A 496 ------QIIIATGEGAKASLSAFD 513 (521)
T ss_dssp ------CHHHHHHHHHHHHHHHHH
T ss_pred ------eeeehHHhHHHHHHHHHH
Confidence 455688888888887753
No 78
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=100.00 E-value=4.7e-34 Score=288.51 Aligned_cols=298 Identities=19% Similarity=0.198 Sum_probs=211.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
+++|||||||+||+++|..|++.+. +.+|+|||+++.+.|. |.+.. +... ......+ .....+++
T Consensus 2 ~~~vvIIGgG~aGl~aA~~L~~~~~-g~~Vtlie~~~~~~~~-~~~~~-~~~g-~~~~~~~-----------~~~~~~~~ 66 (430)
T 3h28_A 2 AKHVVVIGGGVGGIATAYNLRNLMP-DLKITLISDRPYFGFT-PAFPH-LAMG-WRKFEDI-----------SVPLAPLL 66 (430)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCT-TCEEEEECSSSEEECG-GGHHH-HHHT-CSCGGGS-----------EEESTTTG
T ss_pred CCCEEEECccHHHHHHHHHHHcCCC-CCeEEEECCCCCCCcC-CCcch-hccC-ccCHHHH-----------HHHHHHHH
Confidence 4799999999999999999999432 4499999999887663 32211 1110 0001111 12334556
Q ss_pred HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCC-cEEEecCHHHHHHHHHhh---hc
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP-GVHYIRDVADADALISSL---EK 206 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~-gv~~~~~~~~~~~~~~~~---~~ 206 (488)
++.+++++. .+|+.++++.+.+.+++++++.||+||+|||+.+. ++ +.... ....+.+..+...+.+.+ ..
T Consensus 67 ~~~gv~~~~-~~v~~id~~~~~v~~~~g~~i~~d~liiAtG~~~~-~p---g~~~~g~~~~~~~~~~a~~~~~~~~~~~~ 141 (430)
T 3h28_A 67 PKFNIEFIN-EKAESIDPDANTVTTQSGKKIEYDYLVIATGPKLV-FG---AEGQEENSTSICTAEHALETQKKLQELYA 141 (430)
T ss_dssp GGGTEEEEC-SCEEEEETTTTEEEETTCCEEECSEEEECCCCEEE-CC---SBTHHHHSCCCSSHHHHHHHHHHHHHHHH
T ss_pred HhcCCEEEE-EEEEEEECCCCEEEECCCcEEECCEEEEcCCcccc-cC---CCCCcCCccCcCCHHHHHHHHHHHHHHHh
Confidence 678999987 59999999999999999999999999999999865 33 21111 122344555555544432 23
Q ss_pred CCeEEEECCCHHH------HHHHH----HHHhCC----CcEEEEecCCcCccccc--CHHHHHHHHHHHHHcCcEEEcCC
Q 011351 207 AKKVVVVGGGYIG------MEVAA----AAVGWK----LDTTIIFPENHLLQRLF--TPSLAQRYEQLYQQNGVKFVKGA 270 (488)
Q Consensus 207 ~~~vvVvG~G~~g------~e~A~----~l~~~g----~~v~lv~~~~~~l~~~~--~~~~~~~~~~~l~~~GV~v~~~~ 270 (488)
.++++|||+|..+ +|+|. .+.+.| .+|+++++.+.+....+ .+...+.+.+.+++.||++++++
T Consensus 142 ~~~~vVVGgG~~~~~~G~~~E~a~~la~~l~~~g~~~~~~V~~v~~~~~~~~~~l~~~~~~~~~l~~~l~~~GV~i~~~~ 221 (430)
T 3h28_A 142 NPGPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANV 221 (430)
T ss_dssp SCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSC
T ss_pred cCCeEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCccceEEEEecCCccccccccCcchHHHHHHHHHHHHCCCEEEeCC
Confidence 5567888887543 78774 455666 47999999887632111 23578888999999999999999
Q ss_pred eEEEEEeCCCCcEEEEEeCC----CcEEEcCEEEEeecCccCChhhhh--cCCcccCC-CEEeCCCCCC-CCCCEEEEce
Q 011351 271 SIKNLEAGSDGRVAAVKLED----GSTIDADTIVIGIGAKPTVSPFER--VGLNSSVG-GIQVDGQFRT-RMPGIFAIGD 342 (488)
Q Consensus 271 ~v~~i~~~~~~~v~~v~l~~----g~~i~~D~vi~a~G~~p~~~~~~~--~gl~~~~g-~i~vd~~~~t-~~~~Ifa~GD 342 (488)
+|++++.+ .+.+++ ++++++|.|++++|++|+ .++.+ .++..++| +|.||+++|| ++|||||+||
T Consensus 222 ~v~~v~~~------~v~~~~~~~~g~~i~~D~vv~a~G~~~~-~~l~~~~~gl~~~~G~~i~Vd~~l~t~~~~~Ifa~GD 294 (430)
T 3h28_A 222 AVKAIEPD------KVIYEDLNGNTHEVPAKFTMFMPSFQGP-EVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGV 294 (430)
T ss_dssp EEEEECSS------EEEEECTTSCEEEEECSEEEEECEEECC-HHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECST
T ss_pred EEEEEeCC------eEEEEecCCCceEEeeeEEEECCCCccc-hhHhhccccCcCCCCCEEecCccccCCCCCCEEEEEe
Confidence 99999742 244555 678999999999999987 45555 57765678 8999999999 9999999999
Q ss_pred ecccCCccCCcc---cccccHHHHHHHHHHHHHHHhc
Q 011351 343 VAAFPLKMYDRT---ARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 343 ~a~~~~~~~~~~---~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
|+..+... +.. ....+...|..||+.+|+||..
T Consensus 295 ~~~~~~~~-~~~~~~~~pk~~~~A~~~g~~aa~ni~~ 330 (430)
T 3h28_A 295 VTAIPPIE-KTPIPTGVPKTGMMIEQMAMAVAHNIVN 330 (430)
T ss_dssp TBCCCCSS-CCSSCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred eeccCCcc-CCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 99876421 110 0123566799999999999875
No 79
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=99.97 E-value=1.3e-32 Score=278.94 Aligned_cols=291 Identities=16% Similarity=0.163 Sum_probs=198.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
.+++|+|||||+||+++|..|++.+. +.+|+|||+++.. |... ..+ ..+....... ......++
T Consensus 5 ~~~~vvIIG~G~aGl~aA~~l~~~g~-~~~V~vie~~~~~-gg~~--~~g-~~p~~~~~~~-----------~~~~~~~~ 68 (460)
T 1cjc_A 5 QTPQICVVGSGPAGFYTAQHLLKHHS-RAHVDIYEKQLVP-FGLV--RFG-VAPDHPEVKN-----------VINTFTQT 68 (460)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCS-SCEEEEECSSSSS-CTHH--HHT-SCTTCGGGGG-----------HHHHHHHH
T ss_pred CCceEEEECcCHHHHHHHHHHHhcCC-CCCEEEEeCCCcC-Ccee--ecc-cCCCCccHHH-----------HHHHHHHH
Confidence 45799999999999999999999883 4599999998764 3211 000 0010000000 01123455
Q ss_pred HHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHH----HHHh--
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADA----LISS-- 203 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~----~~~~-- 203 (488)
+++.+++++.++.+ .+.|++++. .+.||+||+|||+.+...++++|.+.+++++.+++..... ....
T Consensus 69 ~~~~gv~~~~~~~v------~~~V~~~~~-~~~~d~lVlAtGs~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~ 141 (460)
T 1cjc_A 69 ARSDRCAFYGNVEV------GRDVTVQEL-QDAYHAVVLSYGAEDHQALDIPGEELPGVFSARAFVGWYNGLPENRELAP 141 (460)
T ss_dssp HTSTTEEEEBSCCB------TTTBCHHHH-HHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCC
T ss_pred HHhCCcEEEeeeEE------eeEEEeccc-eEEcCEEEEecCcCCCCCCCCCCCCCCcEEEHHHHHHHhhcCcccccccc
Confidence 66789999987655 133444433 3689999999999863456778877788887654321100 0000
Q ss_pred hhcCCeEEEECCCHHHHHHHHHHH--------------------hCCC-cEEEEecCCcCc--------------cc---
Q 011351 204 LEKAKKVVVVGGGYIGMEVAAAAV--------------------GWKL-DTTIIFPENHLL--------------QR--- 245 (488)
Q Consensus 204 ~~~~~~vvVvG~G~~g~e~A~~l~--------------------~~g~-~v~lv~~~~~~l--------------~~--- 245 (488)
...+++++|||+|++|+|+|..|. +.+. +|+++.|++.+. +.
T Consensus 142 ~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~ 221 (460)
T 1cjc_A 142 DLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRP 221 (460)
T ss_dssp CTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCcee
Confidence 014789999999999999999999 5676 799999987652 11
Q ss_pred -----cc----------CHH---HHHHHHHHHHH--------------cCcEEEcCCeEEEEEeCCCC-cEEEEEeC---
Q 011351 246 -----LF----------TPS---LAQRYEQLYQQ--------------NGVKFVKGASIKNLEAGSDG-RVAAVKLE--- 289 (488)
Q Consensus 246 -----~~----------~~~---~~~~~~~~l~~--------------~GV~v~~~~~v~~i~~~~~~-~v~~v~l~--- 289 (488)
.+ +.. +.+.+.+.+++ +||++++++.++++..++++ ++..|.+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~ 301 (460)
T 1cjc_A 222 MLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTR 301 (460)
T ss_dssp ECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEE
T ss_pred EechhhhcchhhhhhhccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEEE
Confidence 01 110 23344445555 89999999999999854335 56555543
Q ss_pred ------------CC--cEEEcCEEEEeecCccCChhhhhcCC-ccc-CCCEEeCCCCCCC-CCCEEEEceecccCCccCC
Q 011351 290 ------------DG--STIDADTIVIGIGAKPTVSPFERVGL-NSS-VGGIQVDGQFRTR-MPGIFAIGDVAAFPLKMYD 352 (488)
Q Consensus 290 ------------~g--~~i~~D~vi~a~G~~p~~~~~~~~gl-~~~-~g~i~vd~~~~t~-~~~Ifa~GD~a~~~~~~~~ 352 (488)
+| ++++||.||+++|++|+. + .|+ ..+ +|+|.||+++||+ .|+|||+|||+..+..
T Consensus 302 l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~-l---~gl~~~d~~g~i~vn~~~rt~~~p~vya~Gd~~~g~~~--- 374 (460)
T 1cjc_A 302 LEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRP-I---DPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGPTG--- 374 (460)
T ss_dssp EESSGGGCEEEEEEEEEEEECSEEEECCCEECCC-C---CTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHCTTC---
T ss_pred EccccCCCcccCCCceEEEEcCEEEECCCCCCCC-C---CCCcccccCCCeeECCCCcCcCCCCEEEEEeCCcCCCc---
Confidence 34 579999999999999996 3 566 554 5889999999998 7999999999975432
Q ss_pred cccccccHHHHHHHHHHHHHHHhc
Q 011351 353 RTARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 353 ~~~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
.+..|+.+|+.+|.+|++
T Consensus 375 ------~i~~a~~~g~~aa~~i~~ 392 (460)
T 1cjc_A 375 ------VITTTMTDSFLTGQILLQ 392 (460)
T ss_dssp ------CHHHHHHHHHHHHHHHHH
T ss_pred ------cHHHHHHHHHHHHHHHHH
Confidence 244577777777777764
No 80
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=99.97 E-value=1.8e-32 Score=293.27 Aligned_cols=293 Identities=16% Similarity=0.201 Sum_probs=198.9
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (488)
..+++|+|||||+||++||..|++.|+ +|+|||+++..... +... ..++++..+ ....+
T Consensus 387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~---~Vtlie~~~~~GG~-------~~~~-----~~~pg~~~~------~~~~~ 445 (729)
T 1o94_A 387 KNKDSVLIVGAGPSGSEAARVLMESGY---TVHLTDTAEKIGGH-------LNQV-----AALPGLGEW------SYHRD 445 (729)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSTTTT-------HHHH-----TTSTTCGGG------HHHHH
T ss_pred cCCceEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCCCcCCe-------eeec-----ccCCChHHH------HHHHH
Confidence 456899999999999999999999987 89999998764221 0000 011111100 01111
Q ss_pred HHHHCCCeEE--eCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCC-------cCCCCCCCC--CCcEEEecCHHHH
Q 011351 129 WYKEKGIEMI--YQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS-------RFPEKIGGY--LPGVHYIRDVADA 197 (488)
Q Consensus 129 ~~~~~~i~~~--~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~-------~~~~~~g~~--~~gv~~~~~~~~~ 197 (488)
+++. .++.+ .+..+..++. ++.++++++..+.||+||||||+.+. ..++++|.+ .+++++. .+.
T Consensus 446 ~~~~-~i~~~~~~~~~~v~i~~-~~~v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~---~~~ 520 (729)
T 1o94_A 446 YRET-QITKLLKKNKESQLALG-QKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTP---EQV 520 (729)
T ss_dssp HHHH-HHHHHHHHSTTCEEECS-CCCCCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECH---HHH
T ss_pred HHHH-HHHHhhcccCCceEEEe-CeEEehhhccccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEH---HHH
Confidence 2111 11100 0112223332 23444555556899999999999842 234556654 4455543 222
Q ss_pred HHHHHhhhcCCeEEEEC--CCHHHHHHHHHHHhCCCcEEEEecCCcCccc-ccCHHHHHHHHHHHHHcCcEEEcCCeEEE
Q 011351 198 DALISSLEKAKKVVVVG--GGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-LFTPSLAQRYEQLYQQNGVKFVKGASIKN 274 (488)
Q Consensus 198 ~~~~~~~~~~~~vvVvG--~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~ 274 (488)
+......+++|+||| +|.+|+|+|..|+++|.+|+++++.+ ++++ .++.. ...+.+.|++.||++++++.+++
T Consensus 521 --l~~~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~~~~-~~~~~~~l~~~GV~i~~~~~v~~ 596 (729)
T 1o94_A 521 --MDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHFTLE-YPNMMRRLHELHVEELGDHFCSR 596 (729)
T ss_dssp --HHCCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHHTTC-HHHHHHHHHHTTCEEECSEEEEE
T ss_pred --hcCCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-cccccccccc-HHHHHHHHHhCCCEEEcCcEEEE
Confidence 222334578999998 99999999999999999999999998 6653 13333 45677888999999999999999
Q ss_pred EEeCCCCcEEEEE--eCCC-cE------------------EEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCC
Q 011351 275 LEAGSDGRVAAVK--LEDG-ST------------------IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTR 333 (488)
Q Consensus 275 i~~~~~~~v~~v~--l~~g-~~------------------i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~ 333 (488)
++. ++ + .+. +.++ ++ +++|.||+|+|.+|+++++++++. .+|++++|+
T Consensus 597 i~~--~~-v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~~l~~-------~vd~~~~t~ 665 (729)
T 1o94_A 597 IEP--GR-M-EIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNELKA-------RESEWAEND 665 (729)
T ss_dssp EET--TE-E-EEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHHHHHH-------TGGGTGGGT
T ss_pred EEC--Ce-E-EEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCChHHHHHHhh-------hcccccccC
Confidence 973 22 2 222 1233 33 999999999999999988775432 268899999
Q ss_pred CCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCceeEeccccC
Q 011351 334 MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYE 396 (488)
Q Consensus 334 ~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~~~~p~~~~~~~~~~ 396 (488)
+|+|||+|||+... .+..|..+|+.+|.+|.+. ..+..+|| |++++++.
T Consensus 666 ~~~VyAiGD~~~~~-----------~~~~A~~~G~~aA~~i~~~--l~~~~~p~-~~~~~~~~ 714 (729)
T 1o94_A 666 IKGIYLIGDAEAPR-----------LIADATFTGHRVAREIEEA--NPQIAIPY-KRETIAWG 714 (729)
T ss_dssp CCEEEECGGGTSCC-----------CHHHHHHHHHHHHHTTTSS--CTTSCCCC-CCCCCCTT
T ss_pred CCCeEEEeCccchh-----------hHHHHHHHHHHHHHHhhhh--cccCCCCe-eeecccCc
Confidence 99999999998621 4567999999999999853 34677888 77887754
No 81
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=99.97 E-value=4.5e-31 Score=268.54 Aligned_cols=289 Identities=15% Similarity=0.155 Sum_probs=195.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHH---cCCCCCcEEEEcCCCCCC----CCC-CCC--------C---ccccCCCCCCCCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVE---HGMADGRLCIVSKEAYAP----YER-PAL--------T---KGYLFPLDKKPARL 111 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~---~g~~~~~V~lie~~~~~~----~~~-~~l--------~---~~~~~~~~~~~~~~ 111 (488)
.++|+|||||+||++||..|++ .|.+..+|+|||+++... |.. +.. + .............+
T Consensus 2 ~~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~ 81 (464)
T 2xve_A 2 ATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEF 81 (464)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCB
T ss_pred CCcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhccc
Confidence 3699999999999999999999 887212299999986532 110 000 0 00000000000001
Q ss_pred CCcccc-----------cCCCCCCCCHhHHHHCCCe--EEeCCcEEEEeCCCc----EEEeCC---C--cEEEeccEEec
Q 011351 112 PGFHTC-----------VGSGGERQTPEWYKEKGIE--MIYQDPVTSIDIEKQ----TLITNS---G--KLLKYGSLIVA 169 (488)
Q Consensus 112 ~~~~~~-----------~~~~~~~~~~~~~~~~~i~--~~~~~~v~~id~~~~----~v~~~~---g--~~i~yd~lVlA 169 (488)
+.+... .......++.+++++.+++ ++++++|+.++.... +|++.+ | .++.||+||+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvA 161 (464)
T 2xve_A 82 ADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCC 161 (464)
T ss_dssp TTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred CCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEEC
Confidence 111000 0000001122344556887 888889999987654 677654 4 56899999999
Q ss_pred cC--CCCCcCCCCCCCCC-Cc-EEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc
Q 011351 170 TG--CTASRFPEKIGGYL-PG-VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR 245 (488)
Q Consensus 170 tG--~~~~~~~~~~g~~~-~g-v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~ 245 (488)
|| +.|. .|.++|.+. ++ +.+..++.+. ....+++|+|||+|.+|+|+|..|.+.+.+|+++++++.+++.
T Consensus 162 tG~~s~p~-~p~ipG~~~~~g~~~hs~~~~~~-----~~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~~ 235 (464)
T 2xve_A 162 TGHFSTPY-VPEFEGFEKFGGRILHAHDFRDA-----LEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGY 235 (464)
T ss_dssp CCSSSSBC-CCCCBTTTTCCSEEEEGGGCCCG-----GGGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCCCC
T ss_pred CCCCCCCc-cCCCCCcccCCceEEehhhhCCH-----hHcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCCCC
Confidence 99 6665 455666432 33 2332221111 1236899999999999999999999999999999999887764
Q ss_pred ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhh-cCCcccCC-C
Q 011351 246 LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER-VGLNSSVG-G 323 (488)
Q Consensus 246 ~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~-~gl~~~~g-~ 323 (488)
.+ ..||+++ ..|++++. + .|.+.||+++++|.||+|||++|+.+++.. +++..+++ .
T Consensus 236 ~~-------------~~~V~~~--~~V~~i~~---~---~V~~~dG~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~~~~ 294 (464)
T 2xve_A 236 KW-------------PENWDER--PNLVRVDT---E---NAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLW 294 (464)
T ss_dssp CC-------------CTTEEEC--SCEEEECS---S---EEEETTSCEEECSEEEECCCBCCCCTTBCTTTCCCCCSSSC
T ss_pred CC-------------CCceEEc--CCeEEEeC---C---EEEECCCCEEeCCEEEECCCCCCCCCCcCcccccccCCCcc
Confidence 32 2478887 67888852 2 578899999999999999999999998875 67776655 4
Q ss_pred EEeCCC---CCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 011351 324 IQVDGQ---FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ 378 (488)
Q Consensus 324 i~vd~~---~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~ 378 (488)
+ ++.+ ++|+.|+|||+|||+... .+..|..||+.+|+++.+..
T Consensus 295 v-~~~~~~~~~t~~p~i~aiGd~~~~~-----------~~~~a~~qa~~~a~~l~G~~ 340 (464)
T 2xve_A 295 P-LNLYKGVVWEDNPKFFYIGMQDQWY-----------SFNMFDAQAWYARDVIMGRL 340 (464)
T ss_dssp C-SSEETTTEESSSTTEEECSCSCCSS-----------CHHHHHHHHHHHHHHHTTSS
T ss_pred c-ccccceEecCCCCCEEEEeCccccc-----------chHHHHHHHHHHHHHHcCCC
Confidence 4 4433 568999999999988631 45678999999999998754
No 82
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=99.97 E-value=5.3e-32 Score=288.52 Aligned_cols=276 Identities=18% Similarity=0.159 Sum_probs=194.1
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCH
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (488)
...++||+|||||+||++||..|++.|+ +|+|||+++..... .... ... ++.... ........
T Consensus 388 ~~~~~~VvIIGgG~AGl~aA~~La~~G~---~V~liE~~~~~GG~-~~~~--~~~---------p~~~~~--~~~~~~~~ 450 (690)
T 3k30_A 388 KESDARVLVVGAGPSGLEAARALGVRGY---DVVLAEAGRDLGGR-VTQE--SAL---------PGLSAW--GRVKEYRE 450 (690)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHHTC---EEEEECSSSSSCTH-HHHH--HTS---------TTCGGG--GHHHHHHH
T ss_pred ccccceEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCCCCE-eeec--cCC---------CchhHH--HHHHHHHH
Confidence 3457899999999999999999999987 89999998754321 0000 000 110000 00001223
Q ss_pred hHHHHC-CCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCC-------cCCCCCCCCCCcEEEecCHHHHHH
Q 011351 128 EWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS-------RFPEKIGGYLPGVHYIRDVADADA 199 (488)
Q Consensus 128 ~~~~~~-~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~-------~~~~~~g~~~~gv~~~~~~~~~~~ 199 (488)
..+.+. ++++++++.++ .++++++.||+||+|||+.+. ..+.++|.+.+++.+. .+ .
T Consensus 451 ~~~~~~~gv~~~~~~~v~----------~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~~~v~~~---~~--~ 515 (690)
T 3k30_A 451 AVLAELPNVEIYRESPMT----------GDDIVEFGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLGP---DD--L 515 (690)
T ss_dssp HHHHTCTTEEEESSCCCC----------HHHHHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCTTSEEECH---HH--H
T ss_pred HHHHHcCCCEEEECCeec----------HHHHhhcCCCEEEEcCCCccccccccccCCCCCCCCCCCcEEcH---HH--H
Confidence 344555 88888765432 233445789999999999853 1344555544444332 22 2
Q ss_pred HHHhhhcCCeEEEEC--CCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351 200 LISSLEKAKKVVVVG--GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (488)
Q Consensus 200 ~~~~~~~~~~vvVvG--~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 277 (488)
+......+++++||| +|.+|+|+|..|.+.|.+|+++++.+.+++...++.....+.+.+++.||+++++++|++++.
T Consensus 516 l~~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~ 595 (690)
T 3k30_A 516 FAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGA 595 (690)
T ss_dssp HTTCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEET
T ss_pred hCCCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccccchhHHHHHHHHHHCCCEEEcCcEEEEEEC
Confidence 222334678899999 999999999999999999999999998887654566678888999999999999999999984
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCccccc
Q 011351 278 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 357 (488)
Q Consensus 278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~ 357 (488)
+ +..+..+...+++++++|.||+|+|++|+.++++.++... . +|+.|+|||+|||+..+
T Consensus 596 ~-~~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~~l~~~~---~-------~t~~~~VyaiGD~~~~~---------- 654 (690)
T 3k30_A 596 G-GVTVRDTYASIERELECDAVVMVTARLPREELYLDLVARR---D-------AGEIASVRGIGDAWAPG---------- 654 (690)
T ss_dssp T-EEEEEETTTCCEEEEECSEEEEESCEEECCHHHHHHHHHH---H-------HTSCSEEEECGGGTSCB----------
T ss_pred C-eEEEEEccCCeEEEEECCEEEECCCCCCChHHHHHHhhhh---c-------ccCCCCEEEEeCCCchh----------
Confidence 2 2111111123566899999999999999998877653321 1 78899999999999742
Q ss_pred ccHHHHHHHHHHHHHHHhcC
Q 011351 358 EHVDHARQSAQHCIKALLSA 377 (488)
Q Consensus 358 ~~~~~A~~~g~~~a~~i~~~ 377 (488)
.+..|..+|+.+|.+|.+.
T Consensus 655 -~~~~A~~~g~~aa~~i~~~ 673 (690)
T 3k30_A 655 -TIAAAVWSGRRAAEEFDAV 673 (690)
T ss_dssp -CHHHHHHHHHHHHHHTTCC
T ss_pred -hHHHHHHHHHHHHHHHHhh
Confidence 3455999999999999864
No 83
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=99.97 E-value=1e-31 Score=272.04 Aligned_cols=287 Identities=18% Similarity=0.204 Sum_probs=192.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHH-c------CCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVE-H------GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGG 122 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~-~------g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (488)
.+++|+|||||+||++||..|++ . +. +|+|||+++.+ |... ..+ ..+...... ..
T Consensus 2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~---~V~lie~~~~~-gg~~--~~g-v~p~~~~~~-----------~~ 63 (456)
T 1lqt_A 2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDM---AVDMLEMLPTP-WGLV--RSG-VAPDHPKIK-----------SI 63 (456)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCE---EEEEEESSSSC-STHH--HHT-SCTTCTGGG-----------GG
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhCccccCCCC---eEEEEecCCCC-CCcc--ccc-cCCCCCCHH-----------HH
Confidence 35799999999999999999999 7 65 89999998763 3211 000 111100000 01
Q ss_pred CCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHH-H
Q 011351 123 ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL-I 201 (488)
Q Consensus 123 ~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~-~ 201 (488)
.....+++++.+++++.+..+ .+.|++++++ +.||+||+|||+.+...+.++|.+.+++++..++....+- .
T Consensus 64 ~~~~~~~~~~~~v~~~~~v~v------~~~v~~~~~~-~~~d~lViAtG~~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~ 136 (456)
T 1lqt_A 64 SKQFEKTAEDPRFRFFGNVVV------GEHVQPGELS-ERYDAVIYAVGAQSDRMLNIPGEDLPGSIAAVDFVGWYNAHP 136 (456)
T ss_dssp HHHHHHHHTSTTEEEEESCCB------TTTBCHHHHH-HHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCG
T ss_pred HHHHHHHHhcCCCEEEeeEEE------CCEEEECCCe-EeCCEEEEeeCCCCCCCCCCCCCCCCCcEEHHHHHhhhhcCc
Confidence 122345566778999877442 2345555553 7899999999997323456777777787765433211000 0
Q ss_pred ---Hhh--hcCCeEEEECCCHHHHHHHHHHHhC--------------------C-CcEEEEecCCcCcccccC-------
Q 011351 202 ---SSL--EKAKKVVVVGGGYIGMEVAAAAVGW--------------------K-LDTTIIFPENHLLQRLFT------- 248 (488)
Q Consensus 202 ---~~~--~~~~~vvVvG~G~~g~e~A~~l~~~--------------------g-~~v~lv~~~~~~l~~~~~------- 248 (488)
... ..+++++|||+|++|+|+|..|.+. + .+|+++.|++.+...+..
T Consensus 137 d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~ 216 (456)
T 1lqt_A 137 HFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELA 216 (456)
T ss_dssp GGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGG
T ss_pred ccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhh
Confidence 011 1578999999999999999999874 4 489999998866542111
Q ss_pred -----------HHH------------------HHHHHHHHHH------cCcEEEcCCeEEEEEeCCCCcEEEEEeC----
Q 011351 249 -----------PSL------------------AQRYEQLYQQ------NGVKFVKGASIKNLEAGSDGRVAAVKLE---- 289 (488)
Q Consensus 249 -----------~~~------------------~~~~~~~l~~------~GV~v~~~~~v~~i~~~~~~~v~~v~l~---- 289 (488)
+++ .+.+.+.+++ +||++++++.++++..+ +++..+.+.
T Consensus 217 ~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~--~~v~~v~~~~~~~ 294 (456)
T 1lqt_A 217 DLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGK--RKVERIVLGRNEL 294 (456)
T ss_dssp GCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECS--SSCCEEEEEEEEE
T ss_pred cCCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecC--CcEeEEEEEEEEe
Confidence 111 2344444555 79999999999999843 444344443
Q ss_pred ------------CC--cEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCC-CCCCCEEEEceecccCCccCCc
Q 011351 290 ------------DG--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFR-TRMPGIFAIGDVAAFPLKMYDR 353 (488)
Q Consensus 290 ------------~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~-t~~~~Ifa~GD~a~~~~~~~~~ 353 (488)
+| ++++||.|++++|++|+. + .++..+ +|++.+|+++| |+.|+|||+|||+..|...
T Consensus 295 ~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~-l---~gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp~~~--- 367 (456)
T 1lqt_A 295 VSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVP-T---PGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGV--- 367 (456)
T ss_dssp EECSSSSEEEEEEEEEEEEECSEEEECSCEECCC-C---TTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCSC---
T ss_pred cCCCcccccccCCCceEEEEcCEEEEccccccCC-C---CCCcccCCCCeeECCCCcCCCCCCEEEEeccCCCCchh---
Confidence 34 469999999999999986 3 355554 57899999999 7999999999999755421
Q ss_pred ccccccHHHHHHHHHHHHHHHhc
Q 011351 354 TARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 354 ~~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
+..|+.+|..+|.+|++
T Consensus 368 ------i~~a~~~g~~~a~~i~~ 384 (456)
T 1lqt_A 368 ------IGTNKKDAQDTVDTLIK 384 (456)
T ss_dssp ------TTHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHH
Confidence 22366777777777754
No 84
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=99.97 E-value=8.4e-31 Score=287.58 Aligned_cols=279 Identities=15% Similarity=0.171 Sum_probs=204.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC-CCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA-LTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
++||||||||+||++||.+|++.|+ +|+|||+++..... .. .++.. +++... .++.....+.
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~~G~---~V~lie~~~~~GG~-~~~~~k~~----------i~~~~~---~~~~~~~~~~ 190 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASRSGA---RVMLLDERAEAGGT-LLDTAGEQ----------IDGMDS---SAWIEQVTSE 190 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSSGG-GGGSSCCE----------ETTEEH---HHHHHHHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCC---cEEEEeCCCCCCce-eccCCccc----------cCCCCH---HHHHHHHHHH
Confidence 4789999999999999999999987 89999998764311 10 00000 000000 0000111223
Q ss_pred HHH-CCCeEEeCCcEEEEeCCCcEEEe-----------------CCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEe
Q 011351 130 YKE-KGIEMIYQDPVTSIDIEKQTLIT-----------------NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYI 191 (488)
Q Consensus 130 ~~~-~~i~~~~~~~v~~id~~~~~v~~-----------------~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~ 191 (488)
+.+ .+++++.+++|+.++..+....+ .++..+.||+||||||+.++ .++++|.+.+++++.
T Consensus 191 l~~~~~v~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~-~~~ipG~~~~gv~~~ 269 (965)
T 2gag_A 191 LAEAEETTHLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHER-PIVFENNDRPGIMLA 269 (965)
T ss_dssp HHHSTTEEEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEEC-CCCCBTCCSTTEEEH
T ss_pred HhhcCCcEEEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccC-CCCCCCCCCCCEEEh
Confidence 344 48999998889998876532211 11236899999999999876 456788888898876
Q ss_pred cCHHHHHHHHHh--hhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcC
Q 011351 192 RDVADADALISS--LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG 269 (488)
Q Consensus 192 ~~~~~~~~~~~~--~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~ 269 (488)
.++. .+.+. ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+++ . .+.+++.||+++++
T Consensus 270 ~~~~---~~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~-----~-----~~~l~~~GV~v~~~ 336 (965)
T 2gag_A 270 GAVR---SYLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSISA-----A-----AAQAVADGVQVISG 336 (965)
T ss_dssp HHHH---HHHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCH-----H-----HHHHHHTTCCEEET
T ss_pred HHHH---HHHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccch-----h-----HHHHHhCCeEEEeC
Confidence 4332 22221 22468999999999999999999999999999999987654 1 45688999999999
Q ss_pred CeEEEEEeCCCCcEEEEEeCC-------C--cEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCC-----CCCC
Q 011351 270 ASIKNLEAGSDGRVAAVKLED-------G--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFR-----TRMP 335 (488)
Q Consensus 270 ~~v~~i~~~~~~~v~~v~l~~-------g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~-----t~~~ 335 (488)
+.+++++..+++++..|.+.+ | ++++||.|++++|++|++++++.. .++|.+|++++ |+.|
T Consensus 337 ~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~-----~g~i~vd~~~~~~v~~ts~p 411 (965)
T 2gag_A 337 SVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQR-----QGKLDWDTTIHAFVPADAVA 411 (965)
T ss_dssp EEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHHT-----TCCEEEETTTTEEEECSCCT
T ss_pred CEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHhC-----CCcEEEcCcccccccCCCCC
Confidence 999999853245555666654 5 679999999999999999887765 36899999887 8999
Q ss_pred CEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351 336 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 336 ~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
+|||+|||+..+. ...|..+|+.+|.+|++
T Consensus 412 ~IyAaGD~a~~~~-----------l~~A~~~G~~aA~~i~~ 441 (965)
T 2gag_A 412 NQHLAGAMTGRLD-----------TASALSTGAATGAAAAT 441 (965)
T ss_dssp TEEECGGGGTCCS-----------HHHHHHHHHHHHHHHHH
T ss_pred CEEEEEecCCchh-----------HHHHHHHHHHHHHHHHH
Confidence 9999999998632 23588899999998864
No 85
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=99.97 E-value=1.7e-30 Score=265.29 Aligned_cols=314 Identities=14% Similarity=0.084 Sum_probs=191.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCC---CcEEEEcCCCCCCCCCCCCCccccCC------C--CCCCCCCCCcc---
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMAD---GRLCIVSKEAYAPYERPALTKGYLFP------L--DKKPARLPGFH--- 115 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~---~~V~lie~~~~~~~~~~~l~~~~~~~------~--~~~~~~~~~~~--- 115 (488)
.++||+|||||+||+++|..|++.|. + .+|+|||+++...|....+..+.... . ...+.....+.
T Consensus 29 ~~~dVvIIGaG~aGl~aA~~L~~~g~-~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l 107 (463)
T 3s5w_A 29 VVHDLIGVGFGPSNIALAIALQERAQ-AQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYL 107 (463)
T ss_dssp CEESEEEECCSHHHHHHHHHHHHHHH-HHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHhccc-ccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhh
Confidence 35699999999999999999999982 1 38999999987665421111000000 0 00000000000
Q ss_pred cccC---------C------CCCCCCHhHHHHCCCeEEeCCcEEEEeCC---Cc----EEEeCCCc----EEEeccEEec
Q 011351 116 TCVG---------S------GGERQTPEWYKEKGIEMIYQDPVTSIDIE---KQ----TLITNSGK----LLKYGSLIVA 169 (488)
Q Consensus 116 ~~~~---------~------~~~~~~~~~~~~~~i~~~~~~~v~~id~~---~~----~v~~~~g~----~i~yd~lVlA 169 (488)
...+ . ++..+...+.++.+++++++++|++++++ .+ +|++.+++ ++.||+||+|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlA 187 (463)
T 3s5w_A 108 HKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVS 187 (463)
T ss_dssp HHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEEC
T ss_pred hhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEEC
Confidence 0000 0 00000111223457889999899999876 43 66666765 7999999999
Q ss_pred cCCCCCcCCC-CCCCCCC-cEEEecCHHH-HHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCcCcc
Q 011351 170 TGCTASRFPE-KIGGYLP-GVHYIRDVAD-ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQ 244 (488)
Q Consensus 170 tG~~~~~~~~-~~g~~~~-gv~~~~~~~~-~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~--g~~v~lv~~~~~~l~ 244 (488)
||+.|. .|. ..+.... .+.+.....+ .+.+......+++|+|||+|.+|+|+|..|.+. +.+|++++|.+.+++
T Consensus 188 tG~~p~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p 266 (463)
T 3s5w_A 188 PGGTPR-IPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKP 266 (463)
T ss_dssp CCCEEC-CCGGGGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCB
T ss_pred CCCCCC-CcchhhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcC
Confidence 999765 343 2221111 3333322221 111211112588999999999999999999998 889999999987755
Q ss_pred cc-------------------cCHHHHHHHHHHHHH--------------------------cCcEEEcCCeEEEEEeCC
Q 011351 245 RL-------------------FTPSLAQRYEQLYQQ--------------------------NGVKFVKGASIKNLEAGS 279 (488)
Q Consensus 245 ~~-------------------~~~~~~~~~~~~l~~--------------------------~GV~v~~~~~v~~i~~~~ 279 (488)
.. +++.....+.+.+.. .||++++++.|++++.++
T Consensus 267 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~ 346 (463)
T 3s5w_A 267 ADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATA 346 (463)
T ss_dssp CCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEET
T ss_pred ccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecC
Confidence 21 122222222222222 599999999999998643
Q ss_pred CCcEEEEEeC---CCcE--EEcCEEEEeecCccC--ChhhhhcCCcccCCCEEeCCCCCCC-----CCCEEEEceecccC
Q 011351 280 DGRVAAVKLE---DGST--IDADTIVIGIGAKPT--VSPFERVGLNSSVGGIQVDGQFRTR-----MPGIFAIGDVAAFP 347 (488)
Q Consensus 280 ~~~v~~v~l~---~g~~--i~~D~vi~a~G~~p~--~~~~~~~gl~~~~g~i~vd~~~~t~-----~~~Ifa~GD~a~~~ 347 (488)
+. ..+.+. +|+. +++|.||+|||++|+ .++++.+.... |++.||+++++. .|+|||+|||....
T Consensus 347 -~~-~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l~~~~--g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~~~ 422 (463)
T 3s5w_A 347 -QG-IELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLAEYL--GDHEIGRDYRLQTDERCKVAIYAQGFSQASH 422 (463)
T ss_dssp -TE-EEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGGGGGB--C--CCCTTSBCCBCTTBCSEEEESSCCHHHH
T ss_pred -CE-EEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHHHHHh--CCcccCcccccccCCCCCCeEEEcCCCcccC
Confidence 33 345555 6654 999999999999999 66776654433 789999999873 46799999998643
Q ss_pred CccCCcccccccHHHHHHHHHHHHHHH
Q 011351 348 LKMYDRTARVEHVDHARQSAQHCIKAL 374 (488)
Q Consensus 348 ~~~~~~~~~~~~~~~A~~~g~~~a~~i 374 (488)
..... ..-..|.+++++++..+
T Consensus 423 g~~~~-----~l~~~a~r~~~i~~~~~ 444 (463)
T 3s5w_A 423 GLSDT-----LLSVLPVRAEEISGSLY 444 (463)
T ss_dssp CTTTT-----SSTTHHHHHHHHHHHHH
T ss_pred CcCcc-----chhHHHHHHHHHHHHHH
Confidence 22111 11223666676654443
No 86
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=99.97 E-value=2.4e-30 Score=265.25 Aligned_cols=253 Identities=16% Similarity=0.165 Sum_probs=189.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
++||+|||||+||+++|.+|++. + +|+|||+++...+.....+.... . +++ . ......++
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~~-~---~V~vie~~~~~GG~~~~~~~~~~-g-------~~~----~----~~~~~~~l 167 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQY-L---TVALIEERGWLGGDMWLKGIKQE-G-------FNK----D----SRKVVEEL 167 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTTT-C---CEEEECTTSSSSCSGGGTCSEET-T-------TTE----E----HHHHHHHH
T ss_pred cCCEEEECccHHHHHHHHHHHhc-C---CEEEEeCCCCCCCeeeccccccC-C-------CCC----C----HHHHHHHH
Confidence 46899999999999999999998 5 89999999876554322211110 0 000 0 00011121
Q ss_pred H---HCCCeEEeCCcEEEEeCCCcEEEe---CCCc--EEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHH
Q 011351 131 K---EKGIEMIYQDPVTSIDIEKQTLIT---NSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202 (488)
Q Consensus 131 ~---~~~i~~~~~~~v~~id~~~~~v~~---~~g~--~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~ 202 (488)
. ..+++++.+++|.+++.+.+.+.+ ++++ .+.||+||||||+.+. .+++++.+.+++++.. +...+.+
T Consensus 168 ~~~l~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~-~~~~~g~~~~gv~~~~---~~~~~~~ 243 (493)
T 1y56_A 168 VGKLNENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDS-TMLFENNDMPGVFRRD---FALEVMN 243 (493)
T ss_dssp HHTCCTTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEEC-CCCCTTTTSTTEEEHH---HHHHHHH
T ss_pred HHHHhcCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCcc-CCCCCCCCCCCEEEcH---HHHHHHH
Confidence 1 348888888888888877653322 4454 6899999999999886 4557787788887653 3334433
Q ss_pred h--hhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCC
Q 011351 203 S--LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD 280 (488)
Q Consensus 203 ~--~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~ 280 (488)
. ...+++++|+|+|.+|+| +.+++.||++++++.+++++.+
T Consensus 244 ~~~~~~~~~vvViGgG~~gle-----------------------------------~~l~~~GV~v~~~~~v~~i~~~-- 286 (493)
T 1y56_A 244 VWEVAPGRKVAVTGSKADEVI-----------------------------------QELERWGIDYVHIPNVKRVEGN-- 286 (493)
T ss_dssp TSCBCSCSEEEEESTTHHHHH-----------------------------------HHHHHHTCEEEECSSEEEEECS--
T ss_pred hcccCCCCEEEEECCCHHHHH-----------------------------------HHHHhCCcEEEeCCeeEEEecC--
Confidence 3 235689999999999988 4567889999999999999843
Q ss_pred CcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCcc---cCCCEE-eCCCCCCCCCCEEEEceecccCCccCCcccc
Q 011351 281 GRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNS---SVGGIQ-VDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR 356 (488)
Q Consensus 281 ~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~---~~g~i~-vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~ 356 (488)
+.+..+.+.+|+++++|.||+++|++|+.++++.+|+.. .+|++. ||++++ +.|+|||+|||+..+
T Consensus 287 ~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~~~~~~~g~i~~vd~~~~-s~~~vya~GD~~~~~--------- 356 (493)
T 1y56_A 287 EKVERVIDMNNHEYKVDALIFADGRRPDINPITQAGGKLRFRRGYYSPVLDEYHR-IKDGIYVAGSAVSIK--------- 356 (493)
T ss_dssp SSCCEEEETTCCEEECSEEEECCCEEECCHHHHHTTCCEEEETTEEEECCCTTSE-EETTEEECSTTTCCC---------
T ss_pred CceEEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCCCccccCCceeeccccccC-cCCCEEEEeccCCcc---------
Confidence 345567788999999999999999999999999998864 256676 899999 999999999999742
Q ss_pred cccHHHHHHHHHHHHHHHhc
Q 011351 357 VEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 357 ~~~~~~A~~~g~~~a~~i~~ 376 (488)
.+..|..+|+.+|.+|.+
T Consensus 357 --~~~~A~~~g~~aa~~i~~ 374 (493)
T 1y56_A 357 --PHYANYLEGKLVGAYILK 374 (493)
T ss_dssp --CHHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHH
Confidence 455688999999999876
No 87
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=99.96 E-value=1.1e-29 Score=270.13 Aligned_cols=262 Identities=18% Similarity=0.206 Sum_probs=187.8
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCH
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (488)
...+++|+|||||+||++||..|++.|+ +|+|||+++...+. ..+.. ..+... . +.. ......
T Consensus 370 ~~~~~~vvIIGgG~AGl~aA~~l~~~g~---~V~lie~~~~~gg~-~~~~~--~~~~~~---~---~~~-----~~~~~~ 432 (671)
T 1ps9_A 370 AVQKKNLAVVGAGPAGLAFAINAAARGH---QVTLFDAHSEIGGQ-FNIAK--QIPGKE---E---FYE-----TLRYYR 432 (671)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHTTTC---EEEEEESSSSSCTT-HHHHT--TSTTCT---T---HHH-----HHHHHH
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCCCCCe-eeccc--cCCCHH---H---HHH-----HHHHHH
Confidence 3456899999999999999999999887 89999998765433 11110 000000 0 000 001233
Q ss_pred hHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEE-EeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhc
Q 011351 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLL-KYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK 206 (488)
Q Consensus 128 ~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i-~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~ 206 (488)
+++++.++++++++.|.. ..+ .||+||||||+.+. .|.++|.+.+++++.. +.+......
T Consensus 433 ~~~~~~gv~~~~~~~v~~-------------~~~~~~d~lviAtG~~p~-~~~i~G~~~~~v~~~~-----~~l~~~~~~ 493 (671)
T 1ps9_A 433 RMIEVTGVTLKLNHTVTA-------------DQLQAFDETILASGIVPR-TPPIDGIDHPKVLSYL-----DVLRDKAPV 493 (671)
T ss_dssp HHHHHHTCEEEESCCCCS-------------SSSCCSSEEEECCCEEEC-CCCCBTTTSTTEEEHH-----HHHTSCCCC
T ss_pred HHHHHcCCEEEeCcEecH-------------HHhhcCCEEEEccCCCcC-CCCCCCCCCCcEeeHH-----HHhhCCCCC
Confidence 456678999998865531 114 89999999999886 4556776556666532 222222345
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCC-------------------------------------cEEEEecCCcCcccccCH
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKL-------------------------------------DTTIIFPENHLLQRLFTP 249 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~-------------------------------------~v~lv~~~~~~l~~~~~~ 249 (488)
+++++|||+|.+|+|+|..|.+.|. +|+++++.+..+.+.+++
T Consensus 494 ~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~ 573 (671)
T 1ps9_A 494 GNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGK 573 (671)
T ss_dssp CSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCT
T ss_pred CCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhcccccc
Confidence 7999999999999999999998763 456777777666666777
Q ss_pred HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeC
Q 011351 250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVD 327 (488)
Q Consensus 250 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd 327 (488)
.....+.+.|++.||++++++++++++. ++ + .+. .+| +++++|.||+|+|++|++++++.+.
T Consensus 574 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~--~~-v-~~~-~~G~~~~i~~D~Vi~a~G~~p~~~l~~~l~----------- 637 (671)
T 1ps9_A 574 TTGWIHRTTLLSRGVKMIPGVSYQKIDD--DG-L-HVV-INGETQVLAVDNVVICAGQEPNRALAQPLI----------- 637 (671)
T ss_dssp TTHHHHHHHHHHTTCEEECSCEEEEEET--TE-E-EEE-ETTEEEEECCSEEEECCCEEECCTTHHHHH-----------
T ss_pred ccHHHHHHHHHhcCCEEEeCcEEEEEeC--Ce-E-EEe-cCCeEEEEeCCEEEECCCccccHHHHHHHH-----------
Confidence 7778888999999999999999999973 22 2 222 577 5799999999999999988876531
Q ss_pred CCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHH
Q 011351 328 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 374 (488)
Q Consensus 328 ~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i 374 (488)
...++||++|||+..... .+..|.+||..+|.+|
T Consensus 638 ----~~g~~v~aiGD~~~~~~~---------~~~~A~~~g~~aA~~i 671 (671)
T 1ps9_A 638 ----DSGKTVHLIGGCDVAMEL---------DARRAIAQGTRLALEI 671 (671)
T ss_dssp ----TTTCCEEECGGGTCCSSC---------CHHHHHHHHHHHHHHC
T ss_pred ----hcCCCEEEECCcCccCch---------hHHHHHHHHHHHHHhC
Confidence 122689999999985421 4667999999999875
No 88
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=99.96 E-value=8.7e-29 Score=251.20 Aligned_cols=289 Identities=11% Similarity=0.080 Sum_probs=189.0
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----CCCC-C----CCc---cc----cCC-------CC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YERP-A----LTK---GY----LFP-------LD 105 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~----~~~~-~----l~~---~~----~~~-------~~ 105 (488)
++.++|+|||||++|+++|..|++.|. ..+|+|||+.+... |... . .+. .+ +.. ..
T Consensus 4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~-~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~ 82 (447)
T 2gv8_A 4 PTIRKIAIIGAGPSGLVTAKALLAEKA-FDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPS 82 (447)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHTTTC-CSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCC
T ss_pred CCCCEEEEECccHHHHHHHHHHHhcCC-CCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccC
Confidence 446899999999999999999999876 44899999986432 1110 0 000 00 000 00
Q ss_pred CCCC-----------CCCCcccccCCCC-------CCCCHhHHHHCCCeEEeCCcEEEEeCCCc--EEEeCC---Cc---
Q 011351 106 KKPA-----------RLPGFHTCVGSGG-------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNS---GK--- 159 (488)
Q Consensus 106 ~~~~-----------~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~---g~--- 159 (488)
.... .+.++........ ...+.++.++.+..++++++|+.++.... +|++.+ |+
T Consensus 83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~ 162 (447)
T 2gv8_A 83 PLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPIS 162 (447)
T ss_dssp CCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEE
T ss_pred chhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeE
Confidence 0000 0000000000000 00112233344667888899999987654 566655 66
Q ss_pred EEEeccEEeccCC--CCCcCCCCCCCC-----CCc-EEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCC
Q 011351 160 LLKYGSLIVATGC--TASRFPEKIGGY-----LPG-VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL 231 (488)
Q Consensus 160 ~i~yd~lVlAtG~--~~~~~~~~~g~~-----~~g-v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~ 231 (488)
++.||+||+|||. .|. .|.++|.+ .++ +.+..++.+.. ...+++|+|||+|.+|+|+|..|.+.+.
T Consensus 163 ~~~~d~VVvAtG~~s~p~-~p~i~G~~~~~~~~~g~v~~~~~~~~~~-----~~~~k~VvVvG~G~sg~e~A~~l~~~~~ 236 (447)
T 2gv8_A 163 KDIFDAVSICNGHYEVPY-IPNIKGLDEYAKAVPGSVLHSSLFREPE-----LFVGESVLVVGGASSANDLVRHLTPVAK 236 (447)
T ss_dssp EEEESEEEECCCSSSSBC-BCCCBTHHHHHHHSTTSEEEGGGCCCGG-----GGTTCCEEEECSSHHHHHHHHHHTTTSC
T ss_pred EEEeCEEEECCCCCCCCC-CCCCCChhhhhccCCccEEEecccCChh-----hcCCCEEEEEccCcCHHHHHHHHHHHhC
Confidence 7999999999998 443 34444422 122 34333222211 1258999999999999999999999999
Q ss_pred c-EEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcE-EEcCEEEEeecCccCC
Q 011351 232 D-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-IDADTIVIGIGAKPTV 309 (488)
Q Consensus 232 ~-v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~-i~~D~vi~a~G~~p~~ 309 (488)
+ |+++++.+.+ +++.||.+ +..|+++..+ ++ .|.+.||++ +++|.||+|||++|+.
T Consensus 237 ~~V~l~~r~~~~----------------l~~~~i~~--~~~v~~~~~~-~~---~v~~~dG~~~~~~D~vi~atG~~~~~ 294 (447)
T 2gv8_A 237 HPIYQSLLGGGD----------------IQNESLQQ--VPEITKFDPT-TR---EIYLKGGKVLSNIDRVIYCTGYLYSV 294 (447)
T ss_dssp SSEEEECTTCCS----------------CBCSSEEE--ECCEEEEETT-TT---EEEETTTEEECCCSEEEECCCBCCCC
T ss_pred CcEEEEeCCCCc----------------CCCCCeEE--ecCeEEEecC-CC---EEEECCCCEeccCCEEEECCCCCcCC
Confidence 9 9999998765 33457774 4678888632 22 578899986 7999999999999999
Q ss_pred hh-----hhhc--CCcccCCCEEeCCCCC---CCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 011351 310 SP-----FERV--GLNSSVGGIQVDGQFR---TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ 378 (488)
Q Consensus 310 ~~-----~~~~--gl~~~~g~i~vd~~~~---t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~ 378 (488)
++ ++++ ++.. ++.+.++.+.+ ++.|+||++||+.... .+..|..||+.+|+++.+..
T Consensus 295 ~~l~~~~l~~~~~~i~~-~~~~~~~~~~~v~~~~~p~l~~~G~~~~~~-----------~~~~a~~qa~~~a~~~~g~~ 361 (447)
T 2gv8_A 295 PFPSLAKLKSPETKLID-DGSHVHNVYQHIFYIPDPTLAFVGLALHVV-----------PFPTSQAQAAFLARVWSGRL 361 (447)
T ss_dssp CCHHHHSCCSTTTCCCS-SSSSCCSEETTTEETTCTTEEESSCCBSSC-----------HHHHHHHHHHHHHHHHTTSS
T ss_pred CCCcccccccccCceec-CCCcccccccccccCCCCcEEEEecccccc-----------CchHHHHHHHHHHHHHcCCC
Confidence 98 6654 2333 24455555555 6899999999997632 45678999999999998754
No 89
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=99.95 E-value=1.2e-27 Score=246.93 Aligned_cols=300 Identities=17% Similarity=0.213 Sum_probs=190.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHH-HcCCCCCcEEEEcCCCCCCC-----CCCCC----C-ccccCCCCCC---CCCCCCcc
Q 011351 50 ENREFVIVGGGNAAGYAARTFV-EHGMADGRLCIVSKEAYAPY-----ERPAL----T-KGYLFPLDKK---PARLPGFH 115 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~-~~g~~~~~V~lie~~~~~~~-----~~~~l----~-~~~~~~~~~~---~~~~~~~~ 115 (488)
+++||+|||||+||+++|..|+ +.|. +|+|||+++.... ..|.. + ..+.+..... ...+...
T Consensus 7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~---~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~- 82 (540)
T 3gwf_A 7 HTVDAVVIGAGFGGIYAVHKLHHELGL---TTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTT- 82 (540)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCC---CEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBS-
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCC---CEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCccc-
Confidence 3579999999999999999999 8776 8999999764321 11111 0 0011100000 0000000
Q ss_pred cccCCCCCCCCHhHHHHCCC--eEEeCCcEEEEeCCCc----EEEeCCCcEEEeccEEeccCC--CCCcCCCCCCCC-CC
Q 011351 116 TCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEKQ----TLITNSGKLLKYGSLIVATGC--TASRFPEKIGGY-LP 186 (488)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~i--~~~~~~~v~~id~~~~----~v~~~~g~~i~yd~lVlAtG~--~~~~~~~~~g~~-~~ 186 (488)
.....+...+.....++.++ +++++++|++++.+.. +|++++|+++.||+||+|||. .+. .|.++|.+ ..
T Consensus 83 ~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~-~p~ipG~~~f~ 161 (540)
T 3gwf_A 83 YITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAIN-FPNLPGLDTFE 161 (540)
T ss_dssp EEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBC-CCCCTTGGGCC
T ss_pred CCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCC-CCCCCCccccC
Confidence 00000011122344566787 7888999999987655 788899999999999999994 554 45555533 22
Q ss_pred cEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccC----HHHHHHHH------
Q 011351 187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFT----PSLAQRYE------ 256 (488)
Q Consensus 187 gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~----~~~~~~~~------ 256 (488)
+..... ..........+|+|+|||+|.+|+|+|..|++.+.+|++++|.+.++...++ +...+.++
T Consensus 162 g~~~~~----~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~~~ 237 (540)
T 3gwf_A 162 GETIHT----AAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRI 237 (540)
T ss_dssp SEEEEG----GGCCSSCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTHHHH
T ss_pred CCEEEe----ecCCCccccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHHhccHHH
Confidence 321111 0000112246899999999999999999999999999999999874221222 22111111
Q ss_pred -------------------------------------------------------------------HH-----------
Q 011351 257 -------------------------------------------------------------------QL----------- 258 (488)
Q Consensus 257 -------------------------------------------------------------------~~----------- 258 (488)
+.
T Consensus 238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~~~ 317 (540)
T 3gwf_A 238 WERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPETA 317 (540)
T ss_dssp HHHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 00
Q ss_pred ----------------------HHHcCcEEEc--CCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhh
Q 011351 259 ----------------------YQQNGVKFVK--GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 314 (488)
Q Consensus 259 ----------------------l~~~GV~v~~--~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~ 314 (488)
+.+.+|+++. +..|++++++ +|.++||+++++|.||+|||++++..++..
T Consensus 318 ~~l~P~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~------gv~~~dG~~~~~DvIV~ATGf~~~~~~~~~ 391 (540)
T 3gwf_A 318 RKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAK------GVVTEDGVLHELDVLVFATGFDAVDGNYRR 391 (540)
T ss_dssp HHHCCCSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSS------EEEETTCCEEECSEEEECCCBSCSSHHHHT
T ss_pred HhCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEecC------eEEcCCCCEEECCEEEECCccCccccCcCc
Confidence 1144788885 6789999753 688999999999999999999999767766
Q ss_pred cCCcccCCCEEeCCC----------CCC-CCCCEEEE-ceecccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011351 315 VGLNSSVGGIQVDGQ----------FRT-RMPGIFAI-GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 375 (488)
Q Consensus 315 ~gl~~~~g~i~vd~~----------~~t-~~~~Ifa~-GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~ 375 (488)
.++... +|+.+++. +.+ +.||+|++ |+.+...+ ....+..|++++++.|.
T Consensus 392 ~~i~g~-~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~~s----------~~~~~e~q~~~i~~~i~ 453 (540)
T 3gwf_A 392 IEIRGR-DGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPFTN----------LPPSIETQVEWISDTIG 453 (540)
T ss_dssp SEEECG-GGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCBCSC----------HHHHHHHHHHHHHHHHH
T ss_pred ceEECC-CCcCHHHhhccChhhccccccCCCCceEEEecCCCCCcc----------HHHHHHHHHHHHHHHHH
Confidence 554322 34444432 222 78999999 87654111 23456777888877663
No 90
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=99.93 E-value=3.8e-26 Score=235.91 Aligned_cols=307 Identities=16% Similarity=0.189 Sum_probs=183.5
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-----CCCCC----Cc---cccCCCCC-CCCCCCCcc
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-----ERPAL----TK---GYLFPLDK-KPARLPGFH 115 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~-----~~~~l----~~---~~~~~~~~-~~~~~~~~~ 115 (488)
++++||||||||+||+++|..|++.|. +|+|||+++.... ..|.. .. .+.+.... .........
T Consensus 7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~---~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~ 83 (545)
T 3uox_A 7 SPALDAVVIGAGVTGIYQAFLINQAGM---KVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENF 83 (545)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSS
T ss_pred CCCCCEEEECccHHHHHHHHHHHhCCC---CEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccC
Confidence 446799999999999999999999887 8999999865321 00110 00 00000000 000000000
Q ss_pred cccCCCCCCCCHhHHHHCCC--eEEeCCcEEEEeCCCc----EEEeCCCcEEEeccEEeccC--CCCCcCCCCCCCC-CC
Q 011351 116 TCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEKQ----TLITNSGKLLKYGSLIVATG--CTASRFPEKIGGY-LP 186 (488)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~i--~~~~~~~v~~id~~~~----~v~~~~g~~i~yd~lVlAtG--~~~~~~~~~~g~~-~~ 186 (488)
....+...+.....++.++ .++++++|++++.+.. .|++++|+++.||+||+||| +.+. .|.++|.+ ..
T Consensus 84 -~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~-~p~ipG~~~f~ 161 (545)
T 3uox_A 84 -ASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASR-MPDIKGIDSFK 161 (545)
T ss_dssp -CBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC----CCCTTGGGCC
T ss_pred -CCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCc-CCCCCCccccC
Confidence 0000001122334456676 6888899999987654 88899999999999999999 6665 45555532 22
Q ss_pred cE--EEecCHHHHHHHH-HhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC-cccc---cCHHHHHHH----
Q 011351 187 GV--HYIRDVADADALI-SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-LQRL---FTPSLAQRY---- 255 (488)
Q Consensus 187 gv--~~~~~~~~~~~~~-~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~-l~~~---~~~~~~~~~---- 255 (488)
+. ++.....+..... .....+|+|+|||+|.+|+|+|..|++.+.+|+++.|.+.+ ++.. +++.....+
T Consensus 162 g~~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~ 241 (545)
T 3uox_A 162 GESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTPLGNSPMSKEKMDSLRNRY 241 (545)
T ss_dssp SEEEEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCCCEECCCCBCCHHHHHHHHHTH
T ss_pred CCeEEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCccccCCcCCCCHHHHHHHHhhh
Confidence 32 1111111000000 01236799999999999999999999999999999999874 3321 111111110
Q ss_pred --------------------------------------------------------------------------------
Q 011351 256 -------------------------------------------------------------------------------- 255 (488)
Q Consensus 256 -------------------------------------------------------------------------------- 255 (488)
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 321 (545)
T 3uox_A 242 PTILEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGFRDLLLNKESNKFLADFVAKKIRQRVKDPV 321 (545)
T ss_dssp HHHHHHHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHHHTSBTTTTTCHHHHHHHHHHHHHHHHHHCSCHH
T ss_pred HHHHHHHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHH
Confidence
Q ss_pred -----------------------HHHHHHcCcEEEc--CCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh
Q 011351 256 -----------------------EQLYQQNGVKFVK--GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 310 (488)
Q Consensus 256 -----------------------~~~l~~~GV~v~~--~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~ 310 (488)
.+.|.+.+|+++. +..|++|+++ +|.++|| ++++|.||+|||+++++.
T Consensus 322 ~~~~l~P~~~~~g~kR~~~~~~y~~al~~~nV~lv~~~~~~I~~it~~------gv~~~dG-~~~~D~IV~ATGf~~~~~ 394 (545)
T 3uox_A 322 VAEKLIPKDHPFGAKRVPMETNYYETYNRDNVHLVDIREAPIQEVTPE------GIKTADA-AYDLDVIIYATGFDAVTG 394 (545)
T ss_dssp HHHHTSCSSSCTTSSCCCEESSHHHHTTSTTEEEEETTTSCEEEEETT------EEEESSC-EEECSEEEECCCCBSSSC
T ss_pred HHHhCCCCCCCCCCCccCCCccHHHHhcCCCEEEEecCCCCceEEccC------eEEeCCC-eeecCEEEECCccccccc
Confidence 1112233788885 6789999853 6889999 999999999999998766
Q ss_pred hhhhcCCcccCCCEEeCCCC-----------CCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011351 311 PFERVGLNSSVGGIQVDGQF-----------RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 375 (488)
Q Consensus 311 ~~~~~gl~~~~g~i~vd~~~-----------~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~ 375 (488)
++....+.. .+|+.+++.+ -.+.||+|.+. .|+...+. ......+..|++++++.|.
T Consensus 395 ~~~~~~i~g-~~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~----gp~~~~~~---~s~~~~~e~~~~~i~~~i~ 462 (545)
T 3uox_A 395 SLDRIDIRG-KDNVRLIDAWAEGPSTYLGLQARGFPNFFTLV----GPHNGSTF---CNVGVCGGLQAEWVLRMIS 462 (545)
T ss_dssp SCTTSEEEC-GGGCBHHHHTTTSCCCBTTTBCTTCTTEEECS----SGGGTGGG---SCHHHHHHHHHHHHHHHHH
T ss_pred cCCCceEEC-CCCccHHHhhccccceeeccccCCCCcEEEEe----CCCCCCcc---ccHHHHHHHHHHHHHHHHH
Confidence 655444322 2344444321 12789999883 12211111 1123446778888887663
No 91
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=99.93 E-value=3.6e-25 Score=228.86 Aligned_cols=304 Identities=17% Similarity=0.202 Sum_probs=184.3
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC----C-CCCC----C-ccccCCCCCC---CCCCCCcc
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY----E-RPAL----T-KGYLFPLDKK---PARLPGFH 115 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~----~-~~~l----~-~~~~~~~~~~---~~~~~~~~ 115 (488)
+++++|||||||+||+++|..|++.|+ +|+|||+++.... . .|.. . ..+.+..... .......
T Consensus 19 ~~~~dVvIIGaG~aGl~aA~~L~~~G~---~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~- 94 (549)
T 4ap3_A 19 TTSYDVVVVGAGIAGLYAIHRFRSQGL---TVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEK- 94 (549)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSS-
T ss_pred CCCCCEEEECchHHHHHHHHHHHhCCC---CEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccC-
Confidence 345799999999999999999999887 8999999764320 0 0111 0 0000000000 0000000
Q ss_pred cccCCCCCCCCHhHHHHCCC--eEEeCCcEEEEeCCCc----EEEeCCCcEEEeccEEeccC--CCCCcCCCCCCCC-CC
Q 011351 116 TCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEKQ----TLITNSGKLLKYGSLIVATG--CTASRFPEKIGGY-LP 186 (488)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~i--~~~~~~~v~~id~~~~----~v~~~~g~~i~yd~lVlAtG--~~~~~~~~~~g~~-~~ 186 (488)
...+.+...+....+++.++ .++++++|++++.+.. +|++++|+++.||+||+||| +.|. .|.++|.+ ..
T Consensus 95 ~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~-~p~ipG~~~f~ 173 (549)
T 4ap3_A 95 YATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNAN-TPAFDGLDRFT 173 (549)
T ss_dssp SCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECC-CCCCTTGGGCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCC-CCCCCCcccCC
Confidence 00000001122334566777 7888999999987665 88899999999999999999 6665 45556543 23
Q ss_pred cEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHH------------
Q 011351 187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR------------ 254 (488)
Q Consensus 187 gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~------------ 254 (488)
+........+.+ .....+|+|+|||+|.+|+|+|..|++.+.+|+++.|.+.++....++.+...
T Consensus 174 g~~~~~~~~~~~---~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~ilp~~~~~~~~~~~~~l~~~~~~~ 250 (549)
T 4ap3_A 174 GDIVHTARWPHD---GVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANYSIPAGNVPLDDATRAEQKANYAER 250 (549)
T ss_dssp SEEEEGGGCCTT---CCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECC----CHHHHHHHHHTHHHH
T ss_pred CceEEecccccc---ccccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCcCCCCCHHHHHHHHhccHHH
Confidence 321111000000 11136899999999999999999999999999999999874221122111111
Q ss_pred ---------------------------------------------------------------HHHH-------------
Q 011351 255 ---------------------------------------------------------------YEQL------------- 258 (488)
Q Consensus 255 ---------------------------------------------------------------~~~~------------- 258 (488)
+.+.
T Consensus 251 ~~~~r~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~ 330 (549)
T 4ap3_A 251 RRLSRESGGGSPHRPHPKSALEVSEEERRAVYEERWKLGGVLFSKAFPDQLTDPAANDTARAFWEEKIRAVVDDPAVAEL 330 (549)
T ss_dssp HHHHHHSSSSSSCCCCSSCTTSSCHHHHHHHHHHHHHHCHHHHTTSSTTTTTCHHHHHHHHHHHHHHHHHHCSCHHHHHH
T ss_pred HHHHHhhccccccccCccchhcCCHHHHHHHHHHHHhhcchHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHh
Confidence 1111
Q ss_pred ----------------------HHHcCcEEE--cCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhh
Q 011351 259 ----------------------YQQNGVKFV--KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 314 (488)
Q Consensus 259 ----------------------l~~~GV~v~--~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~ 314 (488)
+.+.+|+++ ....|++++++ +|.++|| ++++|.||+|||+++++.++..
T Consensus 331 l~P~~~~~~~kR~~~~~~y~~al~~~~V~lvd~~~~~I~~it~~------gv~~~dG-~~~~D~iI~ATGf~~~~~~~~~ 403 (549)
T 4ap3_A 331 LTPKDHAIGAKRIVLDSGYYETYNRDNVELVDLRSTPIVGMDET------GIVTTGA-HYDLDMIVLATGFDAMTGSLDK 403 (549)
T ss_dssp HSCSSCCBTTBCCEEESSTGGGGGSTTEEEEETTTSCEEEEETT------EEEESSC-EEECSEEEECCCEEESSTTGGG
T ss_pred CCCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCceEEeCC------cEEeCCC-ceecCEEEECCcccccccccCc
Confidence 122378887 24678898853 6889999 9999999999999998756666
Q ss_pred cCCcccCCCEEeCCCCC-----------CCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011351 315 VGLNSSVGGIQVDGQFR-----------TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 375 (488)
Q Consensus 315 ~gl~~~~g~i~vd~~~~-----------t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~ 375 (488)
.++.. .+|+.+++.++ .+.||+|.+. .|+...+. ......+..|++++++.|.
T Consensus 404 ~~i~g-~~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~----Gp~~~~~~---~s~~~~~e~~~~~i~~~i~ 467 (549)
T 4ap3_A 404 LEIVG-RGGRTLKETWAAGPRTYLGLGIDGFPNFFNLT----GPGSPSVL---ANMVLHSELHVDWVADAIA 467 (549)
T ss_dssp SEEEC-GGGCBHHHHTTTSCCCBTTTBCTTCTTEEETT----CTTSCGGG---SCHHHHHHHHHHHHHHHHH
T ss_pred eeEEC-CCCcCHHHhhccchhhccccccCCCCcEEEEe----CCCCCCcC---ccHHHHHHHHHHHHHHHHH
Confidence 54432 34555553321 2678888852 12111111 1123346677887777663
No 92
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=99.92 E-value=2.6e-24 Score=223.10 Aligned_cols=303 Identities=16% Similarity=0.220 Sum_probs=183.6
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-----CCCCCC---ccccCCCCCCC-----CCCCCcc
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-----ERPALT---KGYLFPLDKKP-----ARLPGFH 115 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~-----~~~~l~---~~~~~~~~~~~-----~~~~~~~ 115 (488)
+.++||+|||||++|+++|..|++.|+ +|+|||+++.... ..|... ..........+ ......
T Consensus 14 ~~~~dVvIIGaG~aGl~aA~~L~~~G~---~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~- 89 (542)
T 1w4x_A 14 PEEVDVLVVGAGFSGLYALYRLRELGR---SVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTER- 89 (542)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBS-
T ss_pred CCCCCEEEECccHHHHHHHHHHHhCCC---CEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccc-
Confidence 345799999999999999999999987 8999999875320 001110 00000000000 000000
Q ss_pred cccCCCCCCCCHhHHHHCC--CeEEeCCcEEEEeCCC----cEEEeCCCcEEEeccEEeccCC--CCCcCCCCCCCC-CC
Q 011351 116 TCVGSGGERQTPEWYKEKG--IEMIYQDPVTSIDIEK----QTLITNSGKLLKYGSLIVATGC--TASRFPEKIGGY-LP 186 (488)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~--i~~~~~~~v~~id~~~----~~v~~~~g~~i~yd~lVlAtG~--~~~~~~~~~g~~-~~ 186 (488)
.....+...+.....++.+ .+++++++|++++.+. .+|++++|+++.||+||+|||. .+. .|.++|.+ ..
T Consensus 90 ~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~-~p~i~G~~~f~ 168 (542)
T 1w4x_A 90 YASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQ-LPNFPGLKDFA 168 (542)
T ss_dssp SCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCC-CCCCTTGGGCC
T ss_pred cCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCC-CCCCCCcccCC
Confidence 0000000011122234444 5688899999987643 3678888988999999999995 443 45555532 33
Q ss_pred cEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc-ccc---cCHHHH----------
Q 011351 187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-QRL---FTPSLA---------- 252 (488)
Q Consensus 187 gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l-~~~---~~~~~~---------- 252 (488)
+..........+ .....+|+|+|||+|.+|+|++..+.+.+.+|+++.|.+.+. ++. +.+...
T Consensus 169 G~~~hs~~~~~~---~~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~~~~~p~l 245 (542)
T 1w4x_A 169 GNLYHTGNWPHE---PVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEF 245 (542)
T ss_dssp SEEEEGGGCCSS---CCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHHHHHHTTHHHH
T ss_pred CceEECCCCCCc---hhccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCCCHHHHHHHHhhCHHH
Confidence 421111100000 011368999999999999999999999999999999987662 210 111110
Q ss_pred -------------------------------------------------------------HHHHHH-------------
Q 011351 253 -------------------------------------------------------------QRYEQL------------- 258 (488)
Q Consensus 253 -------------------------------------------------------------~~~~~~------------- 258 (488)
+.+++.
T Consensus 246 ~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (542)
T 1w4x_A 246 REESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAER 325 (542)
T ss_dssp HHHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred HHHHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCHHHHHh
Confidence 011111
Q ss_pred ----------------------HHHcCcEEE--cCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhh
Q 011351 259 ----------------------YQQNGVKFV--KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 314 (488)
Q Consensus 259 ----------------------l~~~GV~v~--~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~ 314 (488)
+.+.+|+++ .+..|++++++ +|.++| +++++|.||+|||+++++.++..
T Consensus 326 l~P~~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~~------gv~~~d-~~~~~D~ii~atG~~~~~~~~~~ 398 (542)
T 1w4x_A 326 LVPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPR------GVRTSE-REYELDSLVLATGFDALTGALFK 398 (542)
T ss_dssp HSCCSSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECSS------EEEESS-CEEECSEEEECCCCCCTTHHHHT
T ss_pred cCCCCCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcCC------eEEeCC-eEEecCEEEEcCCccccccCcCc
Confidence 112356666 36678888643 688899 89999999999999998788776
Q ss_pred cCCcccCCCEEeCCCCC----------C-CCCCEEEE-ceecccCCccCCcccccccH-HHHHHHHHHHHHHHhc
Q 011351 315 VGLNSSVGGIQVDGQFR----------T-RMPGIFAI-GDVAAFPLKMYDRTARVEHV-DHARQSAQHCIKALLS 376 (488)
Q Consensus 315 ~gl~~~~g~i~vd~~~~----------t-~~~~Ifa~-GD~a~~~~~~~~~~~~~~~~-~~A~~~g~~~a~~i~~ 376 (488)
.++... +++.+++.++ + +.||+|++ |+.+.. ...++ ..+..|++.++++|..
T Consensus 399 ~~i~g~-~G~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~---------~~~~~~~~~e~q~~~ia~~i~~ 463 (542)
T 1w4x_A 399 IDIRGV-GNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPS---------ALSNMLVSIEQHVEWVTDHIAY 463 (542)
T ss_dssp SEEECG-GGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSG---------GGSCHHHHHHHHHHHHHHHHHH
T ss_pred eeeECC-CCCCHHHhhcCchheecccccCCCCceEEEcCCCCCc---------ccccHHHHHHHHHHHHHHHHHH
Confidence 655443 4555554332 1 45666665 655421 12244 5688899999998864
No 93
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=99.88 E-value=1.2e-21 Score=173.19 Aligned_cols=153 Identities=22% Similarity=0.229 Sum_probs=130.2
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc--------cc-----CHHHHHHHHHHHHHcCcEEEcCCeEEEE
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LF-----TPSLAQRYEQLYQQNGVKFVKGASIKNL 275 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~--------~~-----~~~~~~~~~~~l~~~GV~v~~~~~v~~i 275 (488)
+++|||+|++|+++|..|.+.|.+|+++++.+.++.+ .+ ++++.+.+.+.+++.||+++++ +++++
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i 81 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV 81 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence 6899999999999999999999999999998866532 12 4678889999999999999999 99999
Q ss_pred EeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCccc
Q 011351 276 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 355 (488)
Q Consensus 276 ~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~ 355 (488)
+.++++ ..+.+++| ++++|.||+|+|..|+ +++.++++.++|.+.||++++|+.|+|||+|||+..+.+
T Consensus 82 ~~~~~~--~~v~~~~g-~i~ad~vI~A~G~~~~--~~~~~g~~~~~g~i~vd~~~~t~~~~i~a~GD~~~~~~~------ 150 (180)
T 2ywl_A 82 RDMGGV--FEVETEEG-VEKAERLLLCTHKDPT--LPSLLGLTRRGAYIDTDEGGRTSYPRVYAAGVARGKVPG------ 150 (180)
T ss_dssp EECSSS--EEEECSSC-EEEEEEEEECCTTCCH--HHHHHTCCEETTEECCCTTCBCSSTTEEECGGGGTCCSC------
T ss_pred EEcCCE--EEEEECCC-EEEECEEEECCCCCCC--ccccCCCCccCceEEeCCCCCcCCCCEEEeecccCcchh------
Confidence 865333 35778888 8999999999999984 567778877767789999999999999999999986532
Q ss_pred ccccHHHHHHHHHHHHHHHhc
Q 011351 356 RVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 356 ~~~~~~~A~~~g~~~a~~i~~ 376 (488)
.+..|..+|+.+|.+|.+
T Consensus 151 ---~~~~A~~~g~~aa~~i~~ 168 (180)
T 2ywl_A 151 ---HAIISAGDGAYVAVHLVS 168 (180)
T ss_dssp ---CHHHHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHhHHHHHHHHHH
Confidence 556788999999999975
No 94
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=99.81 E-value=8.8e-19 Score=179.54 Aligned_cols=292 Identities=17% Similarity=0.220 Sum_probs=161.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCC-----------CCcEEEEcCCCCCCCCCCCCCcc------ccCCCC--CCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMA-----------DGRLCIVSKEAYAPYERPALTKG------YLFPLD--KKPAR 110 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~-----------~~~V~lie~~~~~~~~~~~l~~~------~~~~~~--~~~~~ 110 (488)
..+||||||+||+||++|..|.+.+.+ ....+.+|+.+.+.++.-.+..+ ++.+.- ..|..
T Consensus 38 ~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s 117 (501)
T 4b63_A 38 ELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRS 117 (501)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTC
T ss_pred CcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCC
Confidence 457999999999999999999986532 22567889887655442111111 000000 00000
Q ss_pred CCCcc-------------cc-----cCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCC----------cEEEeCCC----
Q 011351 111 LPGFH-------------TC-----VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK----------QTLITNSG---- 158 (488)
Q Consensus 111 ~~~~~-------------~~-----~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~----------~~v~~~~g---- 158 (488)
.-.|. .. ...++..++....++.+..++++++|+++.+.. .+|++.++
T Consensus 118 ~~sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~ 197 (501)
T 4b63_A 118 SFTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGE 197 (501)
T ss_dssp TTSHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCC
T ss_pred ccchHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCce
Confidence 00000 00 000001111112234466688899999986532 35666543
Q ss_pred -cEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHH-HHHHHhhhcCCeEEEECCCHHHHHHHHHHHhC--CCcEE
Q 011351 159 -KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA-DALISSLEKAKKVVVVGGGYIGMEVAAAAVGW--KLDTT 234 (488)
Q Consensus 159 -~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~-~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~--g~~v~ 234 (488)
+++.++.||+|||..|. +|...+. .+.+.+.....+. +.+......+|+|+|||+|.+|+|++..|.+. +.+|+
T Consensus 198 ~~~~~ar~vVlatG~~P~-iP~~~~~-~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~ 275 (501)
T 4b63_A 198 ISARRTRKVVIAIGGTAK-MPSGLPQ-DPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTT 275 (501)
T ss_dssp EEEEEEEEEEECCCCEEC-CCTTSCC-CTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTTCEEE
T ss_pred EEEEEeCEEEECcCCCCC-CCCCCCC-CcceeeccccccchhhccccccCCcEEEEECCcHHHHHHHHHHHhcCCCceEE
Confidence 35889999999998765 3433322 2344443332222 22222234789999999999999999999864 67899
Q ss_pred EEecCCcCccc--------ccCHHHHHH-------------------------------HHHH-HHH---------cCcE
Q 011351 235 IIFPENHLLQR--------LFTPSLAQR-------------------------------YEQL-YQQ---------NGVK 265 (488)
Q Consensus 235 lv~~~~~~l~~--------~~~~~~~~~-------------------------------~~~~-l~~---------~GV~ 265 (488)
++.|++.+.+. .+.++..+. +.+. +++ ....
T Consensus 276 ~~~R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~~~~~ 355 (501)
T 4b63_A 276 LIMRDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQWQHR 355 (501)
T ss_dssp EECSSSSCCBCCCCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGGCSSE
T ss_pred EEeCCCccccccccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCccccccee
Confidence 99998765432 111111111 1111 111 1124
Q ss_pred EEcCCeEEEEEeCCC-CcE-----------EEEEeCCCcEEEcCEEEEeecCccCCh-hh-hhc-CCc-ccCCCEEeCCC
Q 011351 266 FVKGASIKNLEAGSD-GRV-----------AAVKLEDGSTIDADTIVIGIGAKPTVS-PF-ERV-GLN-SSVGGIQVDGQ 329 (488)
Q Consensus 266 v~~~~~v~~i~~~~~-~~v-----------~~v~l~~g~~i~~D~vi~a~G~~p~~~-~~-~~~-gl~-~~~g~i~vd~~ 329 (488)
+..+..+..+..... +.+ .++.+.+|+++++|.||+|||++++.. ++ ..+ .+. ..+|.+.|+.+
T Consensus 356 l~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~v~rd 435 (501)
T 4b63_A 356 ILPERKITRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKPHRD 435 (501)
T ss_dssp EECSEEEEEEECCSSSSCEEEEEEESCC--------CCCEEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCCBCTT
T ss_pred ecCCcceeeeeecCCCCeEEEEeeeeEEeCCeeEeCCCeEEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCeeeCCC
Confidence 555666666553222 221 134567889999999999999998853 22 211 122 23567888876
Q ss_pred CCC--------CCCCEEEEcee
Q 011351 330 FRT--------RMPGIFAIGDV 343 (488)
Q Consensus 330 ~~t--------~~~~Ifa~GD~ 343 (488)
++. ..++||+-|-+
T Consensus 436 y~~~~~~~~~~~~~~i~~qg~~ 457 (501)
T 4b63_A 436 YRVEMDPSKVSSEAGIWLQGCN 457 (501)
T ss_dssp SBBCCCTTTBCTTCEEEECSCC
T ss_pred cEEeecCCccCCCceEEecCCC
Confidence 653 23669999943
No 95
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=99.71 E-value=5.7e-20 Score=186.94 Aligned_cols=223 Identities=16% Similarity=0.119 Sum_probs=130.2
Q ss_pred HHHHCCCeEEeCCcEEEEeCCCcEE---EeC-CCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHH----
Q 011351 129 WYKEKGIEMIYQDPVTSIDIEKQTL---ITN-SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL---- 200 (488)
Q Consensus 129 ~~~~~~i~~~~~~~v~~id~~~~~v---~~~-~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~---- 200 (488)
.+++.+++++.++.| ++..++..+ .+. ++.++.+|.+|+|||..+..++...+. ++ .+...+..+.+.
T Consensus 128 ~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~~~~~~~~~--~~-~tGdgi~~a~~aGa~~ 203 (472)
T 2e5v_A 128 LAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSYLYEYSSTQ--ST-NIGDGMAIAFKAGTIL 203 (472)
T ss_dssp HHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGGGSSSBSSC--TT-CSCHHHHHHHHTTCCE
T ss_pred HHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcccCccccCC--CC-CchHHHHHHHHcCCCE
Confidence 345679999999889 987665543 332 223478999999999987644321110 11 111000001110
Q ss_pred --HHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHH--------HHHHHHHHHHHcCcEEEcCC
Q 011351 201 --ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPS--------LAQRYEQLYQQNGVKFVKGA 270 (488)
Q Consensus 201 --~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~--------~~~~~~~~l~~~GV~v~~~~ 270 (488)
.+..+.....+++|+| +++++..+...|..+ +..+.++++++ +++. +...+.+.+++.|. ++++.
T Consensus 204 ~d~e~~q~~p~~~~~ggg--~~~~ae~~~~~G~~~-v~~~g~rf~~~-~~~~~el~~rd~v~~~i~~~~~~~~~-v~ld~ 278 (472)
T 2e5v_A 204 ADMEFVQFHPTVTSLDGE--VFLLTETLRGEGAQI-INENGERFLFN-YDKRGELAPRDILSRAIYIEMLKGHK-VFIDL 278 (472)
T ss_dssp ECTTCEEEEEEEECGGGC--CEECCTHHHHTTCEE-EETTCCCGGGG-TCTTGGGSCHHHHHHHHHHHHHHTCC-EEEEC
T ss_pred eCCcceEEEeEEEccCCC--ceeeehhhcCCceEE-ECCCCCCCCcc-CCcccCcCchhHHHHHHHHHHHhCCc-EEEec
Confidence 0001111234555766 888888888888777 77888888865 3433 25566666666653 33221
Q ss_pred eEEEEEeCCCCcEEEEEeCCCcEEE-cCEEEEeecCccCChhhhhcCC-cccCCCEEeCCCCCCCCCCEEEEceecccCC
Q 011351 271 SIKNLEAGSDGRVAAVKLEDGSTID-ADTIVIGIGAKPTVSPFERVGL-NSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 348 (488)
Q Consensus 271 ~v~~i~~~~~~~v~~v~l~~g~~i~-~D~vi~a~G~~p~~~~~~~~gl-~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~ 348 (488)
+. + .. +. +.++ .|.++++.|..|+ ++++-.+. ....|+|.||+++||++|||||+|||+....
T Consensus 279 ~~--~-----~~-----~~--~~~~~~~~~~~~~G~dp~-~~i~v~p~~~~~~GGI~vd~~~~t~ipgLyAaGd~a~~~~ 343 (472)
T 2e5v_A 279 SK--I-----ED-----FE--RKFPVVAKYLARHGHNYK-VKIPIFPAAHFVDGGIRVNIRGESNIVNLYAIGEVSDSGL 343 (472)
T ss_dssp TT--C-----TT-----HH--HHCHHHHHHHHHTTCCTT-SCEECEEEEEEESCEEECCTTCBCSSBTEEECGGGEECSS
T ss_pred cc--h-----HH-----HH--HHhHHHHHHHHHhCcCcc-cceEeehhhceeCCCeEECCCCccccCCEEecchhccccc
Confidence 10 0 00 00 1233 4677788899998 65443221 1236899999999999999999999998322
Q ss_pred ccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351 349 KMYDRTARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 349 ~~~~~~~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
...++.. ..+...+...|+.+++++.+
T Consensus 344 hg~~rl~-~~sl~~~~v~G~~a~~~~a~ 370 (472)
T 2e5v_A 344 HGANRLA-SNSLLEGLVFGINLPRYVDS 370 (472)
T ss_dssp STTSCCT-THHHHHHHHHHHHGGGTTTS
T ss_pred CCCCCCC-cccHHHHHHHHHHHHHHHHh
Confidence 1111111 22345677778887777754
No 96
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=99.61 E-value=1.2e-14 Score=133.41 Aligned_cols=155 Identities=18% Similarity=0.239 Sum_probs=112.3
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC-----------------cCcccccC-------HHHHHHHHHHHHHc-
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN-----------------HLLQRLFT-------PSLAQRYEQLYQQN- 262 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~-----------------~~l~~~~~-------~~~~~~~~~~l~~~- 262 (488)
..|+|||+|+.|+++|..|++.|.+|+++++.. .++.. ++ ..+...+.+.+++.
T Consensus 4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~-~~d~~g~~~~~~~~~l~~~~~~~~ 82 (232)
T 2cul_A 4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLER-AYDPKDERVWAFHARAKYLLEGLR 82 (232)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHH-HCCTTCCCHHHHHHHHHHHHHTCT
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhh-hccCCCCCHHHHHHHHHHHHHcCC
Confidence 469999999999999999999999999999872 11111 11 26667788888887
Q ss_pred CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC--------------------Chh---hhhcCCcc
Q 011351 263 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT--------------------VSP---FERVGLNS 319 (488)
Q Consensus 263 GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~--------------------~~~---~~~~gl~~ 319 (488)
|++++ +++++++..+ ++.+..+.+.+|+++++|.||+|+|..++ ..+ +++.++..
T Consensus 83 gv~i~-~~~v~~i~~~-~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g~~~ 160 (232)
T 2cul_A 83 PLHLF-QATATGLLLE-GNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGFRF 160 (232)
T ss_dssp TEEEE-ECCEEEEEEE-TTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTTCCE
T ss_pred CcEEE-EeEEEEEEEe-CCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCCCeE
Confidence 99999 4689999864 45666788889988999999999999443 222 33445544
Q ss_pred cCCC----------------EEeCC-------CCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351 320 SVGG----------------IQVDG-------QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 320 ~~g~----------------i~vd~-------~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
.++. ..... ...|++|||||+|||+ ... .+..+..||+.+|.+|+.
T Consensus 161 ~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~g----------~~~~~~~~g~~~a~~i~~ 229 (232)
T 2cul_A 161 VEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-REG----------DYARMSEEGKRLAEHLLH 229 (232)
T ss_dssp EEEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SCC----------CHHHHHHHHHHHHHHHHH
T ss_pred EccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-cCc----------cHHHHHHHHHHHHHHHHh
Confidence 3111 00110 1126899999999999 432 455688999999999874
No 97
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.4e-17 Score=161.58 Aligned_cols=254 Identities=14% Similarity=0.059 Sum_probs=138.6
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHc--CCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT 126 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~--g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (488)
...+||+|||||||||+||.+|+++ |+ +|+|||+++..... ....++..+. .. .....
T Consensus 63 ~~~~DV~IIGaGPAGlsAA~~la~~r~G~---~V~viEk~~~~GG~--~~~~~~~~~~-----~~----------l~~~~ 122 (326)
T 3fpz_A 63 FAVSDVIIVGAGSSGLSAAYVIAKNRPDL---KVCIIESSVAPGGG--SWLGGQLFSA-----MV----------MRKPA 122 (326)
T ss_dssp TTEESEEEECCSHHHHHHHHHHHHHCTTS---CEEEECSSSSCCTT--TTCCSTTCCC-----EE----------EETTT
T ss_pred ccCCCEEEECCCHHHHHHHHHHHHhCCCC---eEEEEECCCCCCce--EEeCCccCCH-----HH----------HHHHH
Confidence 3457999999999999999999764 65 89999998764322 1111111110 00 01234
Q ss_pred HhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCC-Cc--EEEecCHHHHHHHHHh
Q 011351 127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL-PG--VHYIRDVADADALISS 203 (488)
Q Consensus 127 ~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~-~g--v~~~~~~~~~~~~~~~ 203 (488)
...+++.++++..+... ....+..+++++..+.. +..++... .+ +..+.. ....
T Consensus 123 ~~~~~e~Gv~~~~~~~~----------------~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~------~~~~ 179 (326)
T 3fpz_A 123 HLFLQELEIPYEDEGDY----------------VVVKHAALFISTVLSKV-LQLPNVKLFNATCVEDLVT------RPPT 179 (326)
T ss_dssp HHHHHHTTCCCEECSSE----------------EEESCHHHHHHHHHHHH-HTSTTEEEETTEEEEEEEE------ESSC
T ss_pred HHHHHHcCCEEEECCcc----------------eecceeEEEEcchhhhc-cccccceeecccccceeec------cCCc
Confidence 56677888887654221 12334445555544432 22222111 11 111100 0112
Q ss_pred hhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcE
Q 011351 204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV 283 (488)
Q Consensus 204 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v 283 (488)
...+++++++|+|.++++.|..+...+.+++++.+......... +... .. .+.... ..++..
T Consensus 180 ~~~~~~v~viggg~~av~~a~~~~~~~~~v~i~~~~~~~~~~~~-----------~~~~-~~-----~~~~~~-g~~~~~ 241 (326)
T 3fpz_A 180 EKGEVTVAGVVTNWTLVTQAHGTQCAMDPNVIELAGYKNDGTRD-----------LSQK-HG-----VILSTT-GHDGPF 241 (326)
T ss_dssp SSSSCEEEEEEEEEHHHHTCTTSSSCCCCEEEEESCBCTTSSBC-----------TTSC-CC-----EEEECC-CSCSSS
T ss_pred ccCCCEEEEEccCceeeehhhhhhhccCcEEEEeeccccccccc-----------ceee-cc-----eEEEEe-cceeeE
Confidence 24578999999999999999999999999998877654332110 0000 00 011111 011100
Q ss_pred EEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHH
Q 011351 284 AAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA 363 (488)
Q Consensus 284 ~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A 363 (488)
........+.+|.+..+.|.++... ....+.|.+|..++|++|+|||+||++....... +..+ .+..+
T Consensus 242 --~~~~~~~~~~~~~~~~~~g~~~~~~-------~~~e~~iv~~~~~~t~vpGv~aaGDaa~~v~g~~-rmGp--~~g~m 309 (326)
T 3fpz_A 242 --GAFCAKRIVDIDQNQKLGGMKGLDM-------NHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLN-RMGP--TFGAM 309 (326)
T ss_dssp --CSHHHHHHHHHCTTCCCCCCCCBCH-------HHHHHHHHHHCEECTTSBTEEECTHHHHHHHTCC-BCCS--CCHHH
T ss_pred --eecceeEEEecCceeeecceecccc-------cccCCeEEECCCeEECCCCEEEEchHhccccCCC-cCch--HHHHH
Confidence 0000112356677777777766422 1223567888899999999999999986422111 0001 12224
Q ss_pred HHHHHHHHHHHh
Q 011351 364 RQSAQHCIKALL 375 (488)
Q Consensus 364 ~~~g~~~a~~i~ 375 (488)
...|+.||+.|+
T Consensus 310 i~SG~~AAe~I~ 321 (326)
T 3fpz_A 310 ALSGVHAAEQIL 321 (326)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456777777765
No 98
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=99.48 E-value=1.3e-15 Score=151.30 Aligned_cols=122 Identities=19% Similarity=0.166 Sum_probs=73.0
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-------CCCCCCc------cccCCCCCCCCC------
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-------ERPALTK------GYLFPLDKKPAR------ 110 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~-------~~~~l~~------~~~~~~~~~~~~------ 110 (488)
+++||+|||||++|+++|..|++.|. +|+|+|+.+.... .+..+.. .++.........
T Consensus 3 ~~~dViIIGgG~aGl~aA~~la~~G~---~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (401)
T 2gqf_A 3 QYSENIIIGAGAAGLFCAAQLAKLGK---SVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYT 79 (401)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSC
T ss_pred CCCCEEEECCcHHHHHHHHHHHhCCC---CEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCC
Confidence 35899999999999999999999987 8999999875310 0111000 011000000000
Q ss_pred ---------CCCcccc-----------cCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCC----C--cEEEeCCCcEEEec
Q 011351 111 ---------LPGFHTC-----------VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE----K--QTLITNSGKLLKYG 164 (488)
Q Consensus 111 ---------~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~----~--~~v~~~~g~~i~yd 164 (488)
-.+.... ........+.+.+++.+++++.+++|+++..+ . ..|.+.++ ++.+|
T Consensus 80 ~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~ad 158 (401)
T 2gqf_A 80 NWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCK 158 (401)
T ss_dssp HHHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EEEES
T ss_pred HHHHHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-EEECC
Confidence 0000000 00000011234446679999999999998754 2 35666666 69999
Q ss_pred cEEeccCCCCC
Q 011351 165 SLIVATGCTAS 175 (488)
Q Consensus 165 ~lVlAtG~~~~ 175 (488)
+||+|||..+.
T Consensus 159 ~VVlAtG~~s~ 169 (401)
T 2gqf_A 159 NLIVATGGLSM 169 (401)
T ss_dssp EEEECCCCSSC
T ss_pred EEEECCCCccC
Confidence 99999998863
No 99
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=99.23 E-value=1.4e-12 Score=131.22 Aligned_cols=95 Identities=16% Similarity=0.249 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeec--------CccCChhhhh--cCC
Q 011351 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG--------AKPTVSPFER--VGL 317 (488)
Q Consensus 248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G--------~~p~~~~~~~--~gl 317 (488)
+..+...++..+++.| ++++++.|++|+.++ +.+ .|.+.+|+++.+|.||+|+| +.|+.+..+. .+.
T Consensus 203 ~~g~~~l~~~~~~~~g-~i~~~~~V~~i~~~~-~~v-~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~ 279 (431)
T 3k7m_X 203 SNGSADLVDAMSQEIP-EIRLQTVVTGIDQSG-DVV-NVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEE 279 (431)
T ss_dssp TTCTHHHHHHHHTTCS-CEESSCCEEEEECSS-SSE-EEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHH
T ss_pred CCcHHHHHHHHHhhCC-ceEeCCEEEEEEEcC-CeE-EEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHh
Confidence 4445566667777778 999999999998653 344 58888998899999999999 8888764332 111
Q ss_pred cccCCCEEeCCCCCCCCCCEEEEceecc
Q 011351 318 NSSVGGIQVDGQFRTRMPGIFAIGDVAA 345 (488)
Q Consensus 318 ~~~~g~i~vd~~~~t~~~~Ifa~GD~a~ 345 (488)
......++|+..++++.+++|+.||+..
T Consensus 280 ~~~~~~~kv~~~~~~~~~~i~~~~d~~~ 307 (431)
T 3k7m_X 280 GHGGQGLKILIHVRGAEAGIECVGDGIF 307 (431)
T ss_dssp CCCCCEEEEEEEEESCCTTEEEEBSSSS
T ss_pred CCCcceEEEEEEECCCCcCceEcCCCCE
Confidence 1223469999999999999999999843
No 100
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=99.18 E-value=7.9e-11 Score=111.37 Aligned_cols=164 Identities=17% Similarity=0.188 Sum_probs=110.4
Q ss_pred CeEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCcCccc------------------------------------c-cCH
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQR------------------------------------L-FTP 249 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~-g~~v~lv~~~~~~l~~------------------------------------~-~~~ 249 (488)
..|+|||+|++|+.+|..|++. |.+|+++++.+.+... . ...
T Consensus 40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 119 (284)
T 1rp0_A 40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAA 119 (284)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHH
T ss_pred cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCHH
Confidence 4799999999999999999997 9999999988654210 0 113
Q ss_pred HHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEeC---------CC-----cEEEcCEEEEeecCccCChh---
Q 011351 250 SLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLE---------DG-----STIDADTIVIGIGAKPTVSP--- 311 (488)
Q Consensus 250 ~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l~---------~g-----~~i~~D~vi~a~G~~p~~~~--- 311 (488)
.+...+.+.+.+ .|++++++++++++..+ ++++.++.+. +| .++++|.||+|+|..++...
T Consensus 120 ~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~-~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~~ 198 (284)
T 1rp0_A 120 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGV 198 (284)
T ss_dssp HHHHHHHHHHHTSTTEEEEETEEEEEEEEE-TTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHHH
T ss_pred HHHHHHHHHHHhcCCCEEEcCcEEEEEEec-CCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHHH
Confidence 344455566655 69999999999999854 4555556552 32 57999999999998876431
Q ss_pred --hhhcC----CcccCCCEEeCC-------CCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351 312 --FERVG----LNSSVGGIQVDG-------QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 376 (488)
Q Consensus 312 --~~~~g----l~~~~g~i~vd~-------~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~ 376 (488)
+...+ +.. ..++.+|. +.+++.|++|++||++... ++.......+..+..+|+.+|.++..
T Consensus 199 ~~~~~~g~~~~v~~-~~g~~~~~~~~~~v~~~~~~~p~i~a~G~~~~~~---~g~~~~gp~~~~~~~sG~~~a~~i~~ 272 (284)
T 1rp0_A 199 KRLKSIGMIDHVPG-MKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEI---DGAPRMGPTFGAMMISGQKAGQLALK 272 (284)
T ss_dssp HHHHHTTSSSCCCC-CEEECHHHHHHHHHHHCEEEETTEEECTHHHHHH---HTCEECCSCCHHHHHHHHHHHHHHHH
T ss_pred HHhhhccCCCCcCC-cCCchhhhhhHHHhhccccccCCEEEEeeehhhh---cCCCCcChHHHHHHHhHHHHHHHHHH
Confidence 22222 211 22343332 3456779999999987531 11111112456677888988888865
No 101
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=99.12 E-value=9.5e-11 Score=122.25 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=31.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
.+||||||||+||++||..|++.|. +.+|+|||+.+
T Consensus 5 ~~DVvIVG~G~AGl~aAl~la~~G~-~~~V~vlEk~~ 40 (602)
T 1kf6_A 5 QADLAIVGAGGAGLRAAIAAAQANP-NAKIALISKVY 40 (602)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCT-TCCEEEEESSC
T ss_pred cCCEEEECCCHHHHHHHHHHHhcCC-CCcEEEEeCCC
Confidence 5799999999999999999999982 23899999975
No 102
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=99.12 E-value=1.3e-10 Score=102.00 Aligned_cols=107 Identities=18% Similarity=0.202 Sum_probs=73.7
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCccc-ccCCCCCCCCHhHH
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPEWY 130 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 130 (488)
++|+|||||++|+.+|..|++.|. +|+|+|+.+........+ ..+++++. ..+........+.+
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~~g~---~v~lie~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~ 66 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLARAGL---KVLVLDGGRSKVKGVSRV------------PNYPGLLDEPSGEELLRRLEAHA 66 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTC---CEEEEECSCCTTTTCSCC------------CCSTTCTTCCCHHHHHHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCcccCchhh------------hccCCCcCCCCHHHHHHHHHHHH
Confidence 689999999999999999999987 899999987432110000 01111100 00001112334566
Q ss_pred HHCCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCCCCC
Q 011351 131 KEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
++.+++++.+ +|++++.++ ..+++++| ++.+|.||+|+|..+.
T Consensus 67 ~~~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~ 111 (180)
T 2ywl_A 67 RRYGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPT 111 (180)
T ss_dssp HHTTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCH
T ss_pred HHcCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCC
Confidence 7789999998 999998654 36777788 7999999999998863
No 103
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=99.07 E-value=1.6e-11 Score=125.37 Aligned_cols=169 Identities=14% Similarity=-0.048 Sum_probs=98.5
Q ss_pred ccccccceeeccccC---CCCcccceec-cccccccccccccc------------------cccccCCCCCeEEEEcCch
Q 011351 4 VSNSLSFKHGLSLWC---PQSPSLHRIR-HSSAKNFQRRGFVV------------------AYSSFANENREFVIVGGGN 61 (488)
Q Consensus 4 ~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~------------------~~~~~~~~~~~vvIIGgG~ 61 (488)
.+||++.+||.+|.. .|...|.+.. .++..+...+++.. .........++|+|||||+
T Consensus 23 ~~~~~~~~~~rvc~~~~~l~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~ 102 (497)
T 2bry_A 23 ETFVQAQLCQDVLSSFQGLCRALGVESGGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGP 102 (497)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhCCCCCCCcEeehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccH
Confidence 579999999999987 6777777744 22222222111111 0011134568999999999
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CCCcc---ccCCCC----CCCCCCCCcccccCCCCCCCCHhHHHHC
Q 011351 62 AAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-ALTKG---YLFPLD----KKPARLPGFHTCVGSGGERQTPEWYKEK 133 (488)
Q Consensus 62 AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~-~l~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (488)
+|+++|..|++.|. +|+|||+.+.....+. .+... .+.... ........+...........+.+.+++.
T Consensus 103 aGl~aA~~La~~G~---~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 179 (497)
T 2bry_A 103 CGLRAAVELALLGA---RVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLL 179 (497)
T ss_dssp HHHHHHHHHHHTTC---EEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCC---eEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHhC
Confidence 99999999999987 8999999875421100 00000 000000 0000000000000000011223445567
Q ss_pred CCeEEeCCcEEEEeCC-----CcEEEe--C-CC--cEEEeccEEeccCCCCC
Q 011351 134 GIEMIYQDPVTSIDIE-----KQTLIT--N-SG--KLLKYGSLIVATGCTAS 175 (488)
Q Consensus 134 ~i~~~~~~~v~~id~~-----~~~v~~--~-~g--~~i~yd~lVlAtG~~~~ 175 (488)
+++++.+++|+++..+ ...|++ . +| .++.+|+||+|+|..+.
T Consensus 180 gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~ 231 (497)
T 2bry_A 180 GVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFV 231 (497)
T ss_dssp TCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCC
T ss_pred CCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcc
Confidence 9999999999999863 236666 3 55 46899999999998764
No 104
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=99.04 E-value=1.4e-09 Score=112.06 Aligned_cols=160 Identities=18% Similarity=0.132 Sum_probs=91.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC-CCCCCCCCCCccccCCCC--CCCCCCCC------------c
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA-YAPYERPALTKGYLFPLD--KKPARLPG------------F 114 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~-~~~~~~~~l~~~~~~~~~--~~~~~~~~------------~ 114 (488)
..+||+|||||+||++||..|++.|. +|+|||+.. ......+..+.+...... .....+.+ +
T Consensus 26 ~~yDVIVIGgG~AGl~AAlalAr~G~---kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f 102 (637)
T 2zxi_A 26 DEFDVVVIGGGHAGIEAALAAARMGA---KTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQF 102 (637)
T ss_dssp GCCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEE
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCC---CEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccce
Confidence 35899999999999999999999987 899999974 221110100100000000 00000000 0
Q ss_pred cc---ccCC------------CCCCCCHhHHHH-CCCeEEeCCcEEEEeCCCc---EEEeCCCcEEEeccEEeccCCCCC
Q 011351 115 HT---CVGS------------GGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 115 ~~---~~~~------------~~~~~~~~~~~~-~~i~~~~~~~v~~id~~~~---~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
.. ..+. .+...+.+.+++ .+++++ +++|+++..++. .|.+.+|..+.+|.||+|||..+.
T Consensus 103 ~~l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~ 181 (637)
T 2zxi_A 103 KMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLN 181 (637)
T ss_dssp EEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBT
T ss_pred eecccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCcc
Confidence 00 0000 000111233444 489985 579999876544 367788888999999999998765
Q ss_pred cCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEe
Q 011351 176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF 237 (488)
Q Consensus 176 ~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~ 237 (488)
. +..+ |...+. ..+ .|+.++.+++..|.+.|.++..+.
T Consensus 182 ~-~~~~-----G~~~~~--------------~Gr----~G~~~A~~la~~L~~lG~~v~~l~ 219 (637)
T 2zxi_A 182 G-VIYI-----GDKMIP--------------GGR----LGEPRSEGLSDFYRRFDFPLIRFK 219 (637)
T ss_dssp C-EEEE-----TTEEEE--------------CSB----TTBCCBCTHHHHHHHTTCCCEEEE
T ss_pred C-ceec-----cceecC--------------CCC----CCchhHHHHHHHHHhcCCceEEec
Confidence 2 2222 222211 122 235567888999998887765543
No 105
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=98.98 E-value=1.2e-09 Score=112.54 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=31.8
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
..+||||||||+||++||.+|++ |. +|+||||.+.
T Consensus 7 ~~~DVvVVG~G~AGl~aAl~la~-G~---~V~vlEk~~~ 41 (540)
T 1chu_A 7 HSCDVLIIGSGAAGLSLALRLAD-QH---QVIVLSKGPV 41 (540)
T ss_dssp EECSEEEECCSHHHHHHHHHHTT-TS---CEEEECSSCT
T ss_pred CCCCEEEECccHHHHHHHHHHhc-CC---cEEEEECCCC
Confidence 35799999999999999999999 87 8999999864
No 106
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=98.98 E-value=2.8e-09 Score=104.43 Aligned_cols=68 Identities=13% Similarity=0.269 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeecCccCChhhhhc-CC
Q 011351 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERV-GL 317 (488)
Q Consensus 248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g--~~i~~D~vi~a~G~~p~~~~~~~~-gl 317 (488)
+..+...+.+.+++.|++++++++|++++.++++.+ .|.+.+| .++.+|.||+|+|.... .+++.+ |+
T Consensus 149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~g~~~~~~a~~VV~A~G~~s~-~l~~~~~g~ 219 (369)
T 3dme_A 149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGF-ELDFGGAEPMTLSCRVLINAAGLHAP-GLARRIEGI 219 (369)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSE-EEEECTTSCEEEEEEEEEECCGGGHH-HHHHTEETS
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceE-EEEECCCceeEEEeCEEEECCCcchH-HHHHHhcCC
Confidence 346778888889999999999999999997644434 5788888 47999999999998753 566665 54
No 107
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=98.96 E-value=9.3e-10 Score=112.81 Aligned_cols=57 Identities=25% Similarity=0.365 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 306 (488)
Q Consensus 249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~ 306 (488)
..+.+.+.+.+++.|++|++++.|++|..+ ++++++|+++||+++.||.||++++..
T Consensus 221 ~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~-~~~~~gV~~~~g~~~~ad~VV~~a~~~ 277 (501)
T 4dgk_A 221 GALVQGMIKLFQDLGGEVVLNARVSHMETT-GNKIEAVHLEDGRRFLTQAVASNADVV 277 (501)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTSCEEECSCEEECCC--
T ss_pred cchHHHHHHHHHHhCCceeeecceeEEEee-CCeEEEEEecCCcEEEcCEEEECCCHH
Confidence 467788888999999999999999999864 678889999999999999999987654
No 108
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=98.92 E-value=8.6e-10 Score=109.79 Aligned_cols=124 Identities=20% Similarity=0.280 Sum_probs=72.7
Q ss_pred cCCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-------CCCCC------ccccCCCCCCC-----
Q 011351 47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-------RPALT------KGYLFPLDKKP----- 108 (488)
Q Consensus 47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~-------~~~l~------~~~~~~~~~~~----- 108 (488)
|+++++||+|||||+||++||..|++.|. +|+|+|+.+..... +..+. ..++.......
T Consensus 23 M~~~~~dViIIGgG~AGl~aA~~La~~G~---~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~ 99 (417)
T 3v76_A 23 MVAEKQDVVIIGAGAAGMMCAIEAGKRGR---RVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALA 99 (417)
T ss_dssp -----CCEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHH
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHH
Confidence 45567899999999999999999999987 89999998753210 00000 00000000000
Q ss_pred -------------------CCCCCcccc--cCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEecc
Q 011351 109 -------------------ARLPGFHTC--VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGS 165 (488)
Q Consensus 109 -------------------~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~ 165 (488)
....+.... ........+.+.+++.+++++.+++|+++..++. .|.+.+| ++.+|+
T Consensus 100 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~ 178 (417)
T 3v76_A 100 RYRPQDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-TVDAAS 178 (417)
T ss_dssp HSCHHHHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-EEEESE
T ss_pred hcCHHHHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-EEEeeE
Confidence 000000000 0000011123345567999999999999976544 5667777 799999
Q ss_pred EEeccCCCC
Q 011351 166 LIVATGCTA 174 (488)
Q Consensus 166 lVlAtG~~~ 174 (488)
||+|||..+
T Consensus 179 VIlAtG~~S 187 (417)
T 3v76_A 179 LVVASGGKS 187 (417)
T ss_dssp EEECCCCSS
T ss_pred EEECCCCcc
Confidence 999999875
No 109
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...
Probab=98.91 E-value=2e-12 Score=135.36 Aligned_cols=67 Identities=12% Similarity=0.223 Sum_probs=50.4
Q ss_pred HHcCcEEEcCCeEEEEEeCCC-CcEEEEEeC---CCc--EEEcCEEEEeecCccCChhhhhcCCcc----cCCCEEe
Q 011351 260 QQNGVKFVKGASIKNLEAGSD-GRVAAVKLE---DGS--TIDADTIVIGIGAKPTVSPFERVGLNS----SVGGIQV 326 (488)
Q Consensus 260 ~~~GV~v~~~~~v~~i~~~~~-~~v~~v~l~---~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~----~~g~i~v 326 (488)
++.||++++++.|+++..+++ +++.+|.+. +|+ ++.+|.||+|+|..++..+|..+|+-. ...+|.+
T Consensus 271 ~~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~~sgiG~~~~l~~~~i~~ 347 (623)
T 3pl8_A 271 PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPANPPE 347 (623)
T ss_dssp EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHHTTTSSCCSSCCTTSCCS
T ss_pred cCCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHHhcCCCccccccccCCCC
Confidence 345899999999999986533 467777775 354 688999999999999988888776632 2345555
No 110
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=98.90 E-value=6.3e-10 Score=113.65 Aligned_cols=147 Identities=15% Similarity=0.119 Sum_probs=101.9
Q ss_pred EeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHH---------HHh--hhcCCeEEEECCCHHHHHHHHHHHhCC
Q 011351 162 KYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL---------ISS--LEKAKKVVVVGGGYIGMEVAAAAVGWK 230 (488)
Q Consensus 162 ~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~---------~~~--~~~~~~vvVvG~G~~g~e~A~~l~~~g 230 (488)
.||++++++|..+.. +++++...+++.......+..++ ... .....+|+|||+|+.|+.+|..|++.|
T Consensus 37 ~~~~l~~~~g~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA~~La~~G 115 (497)
T 2bry_A 37 SFQGLCRALGVESGG-GLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELALLG 115 (497)
T ss_dssp HHHHHHHHHTCCTTC-HHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCC-CcEeehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHHHHHHHCC
Confidence 478899999998653 33333223333344444444333 111 123568999999999999999999999
Q ss_pred CcEEEEecCCcCccc----cc----------------------------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeC
Q 011351 231 LDTTIIFPENHLLQR----LF----------------------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 278 (488)
Q Consensus 231 ~~v~lv~~~~~~l~~----~~----------------------------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~ 278 (488)
.+|+++++.+.+... .. ...+.+.+.+.+++.||++++++++++++.+
T Consensus 116 ~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~ 195 (497)
T 2bry_A 116 ARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPP 195 (497)
T ss_dssp CEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECC
T ss_pred CeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe
Confidence 999999988654210 00 0456667778888899999999999999863
Q ss_pred C-CCcEEEEEe--C-CC--cEEEcCEEEEeecCccCC
Q 011351 279 S-DGRVAAVKL--E-DG--STIDADTIVIGIGAKPTV 309 (488)
Q Consensus 279 ~-~~~v~~v~l--~-~g--~~i~~D~vi~a~G~~p~~ 309 (488)
+ ++....|.+ . +| +++.+|.||.|+|..+..
T Consensus 196 ~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~ 232 (497)
T 2bry_A 196 PRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVP 232 (497)
T ss_dssp CSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCC
T ss_pred cCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCccc
Confidence 2 222234555 4 66 479999999999998765
No 111
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=98.89 E-value=2.4e-09 Score=97.90 Aligned_cols=117 Identities=15% Similarity=0.166 Sum_probs=71.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCC-CCcccccCC---CCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARL-PGFHTCVGS---GGERQ 125 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~ 125 (488)
+++||+|||||++|+++|..|++.|. +|+|||+...... .+ ... ..... . ...+ ..+....+. .+...
T Consensus 2 ~~~dVvVVGgG~aGl~aA~~la~~g~---~v~lie~~~~~~G-~~-~~~-~~~~~-~-~~~~~~~~~d~~g~~~~~~~~~ 73 (232)
T 2cul_A 2 AAYQVLIVGAGFSGAETAFWLAQKGV---RVGLLTQSLDAVM-MP-FLP-PKPPF-P-PGSLLERAYDPKDERVWAFHAR 73 (232)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESCGGGTT-CC-SSC-CCSCC-C-TTCHHHHHCCTTCCCHHHHHHH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEecCCCcCC-cc-cCc-ccccc-c-hhhHHhhhccCCCCCHHHHHHH
Confidence 46899999999999999999999987 8999999732111 00 000 00000 0 0000 000000000 00011
Q ss_pred CHhHHHHC-CCeEEeCCcEEEEeCCCc---EEEeCCCcEEEeccEEeccCCCCC
Q 011351 126 TPEWYKEK-GIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 126 ~~~~~~~~-~i~~~~~~~v~~id~~~~---~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
+.+.+++. +++++. ++|+++..++. .+.+.+|+++.+|+||+|||....
T Consensus 74 l~~~~~~~~gv~i~~-~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~ 126 (232)
T 2cul_A 74 AKYLLEGLRPLHLFQ-ATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLG 126 (232)
T ss_dssp HHHHHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred HHHHHHcCCCcEEEE-eEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence 23445555 899885 69999986543 366778888999999999998643
No 112
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=98.88 E-value=3.9e-09 Score=109.05 Aligned_cols=160 Identities=14% Similarity=0.151 Sum_probs=89.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC-CCCCCCCCCccccCCCC--CCCCCCCC------------c
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY-APYERPALTKGYLFPLD--KKPARLPG------------F 114 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~-~~~~~~~l~~~~~~~~~--~~~~~~~~------------~ 114 (488)
..+||+|||||+||++||..|++.|. +|+|||+++. .....+..+.+...... .....+.+ +
T Consensus 27 ~~yDVIVIGgG~AGl~AAlaLAr~G~---kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f 103 (651)
T 3ces_A 27 DPFDVIIIGGGHAGTEAAMAAARMGQ---QTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQF 103 (651)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEE
T ss_pred CcCCEEEECChHHHHHHHHHHHhCCC---CEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccch
Confidence 46899999999999999999999987 8999998742 21111110110000000 00000000 0
Q ss_pred ccc---cCC------------CCCCCCHhHHHH-CCCeEEeCCcEEEEeCCCc---EEEeCCCcEEEeccEEeccCCCCC
Q 011351 115 HTC---VGS------------GGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 115 ~~~---~~~------------~~~~~~~~~~~~-~~i~~~~~~~v~~id~~~~---~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
... .+. .+...+.+.+++ .|++++ +++|+.+..++. .|.+.+|..+.+|.||+|||+.+.
T Consensus 104 ~~l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~ 182 (651)
T 3ces_A 104 RILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLD 182 (651)
T ss_dssp EEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred hhhhcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence 000 000 000111233445 589985 579999976543 467778888999999999998765
Q ss_pred cCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEe
Q 011351 176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF 237 (488)
Q Consensus 176 ~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~ 237 (488)
. +. .+|...+ .+.+ +| +.++++++..|.+.|.+|+.+.
T Consensus 183 ~-~~-----i~G~~~~--------------~~gr---iG-g~~a~eLA~~L~~lG~~v~~~~ 220 (651)
T 3ces_A 183 G-KI-----HIGLDNY--------------SGGR---AG-DPPSIPLSRRLRELPLRVGRLK 220 (651)
T ss_dssp C-EE-----ECC-------------------------------CCHHHHHHHTTTCCEEEEC
T ss_pred C-cc-----ccCcccC--------------CCCC---cc-chhhhHHHHHHHhcCCeEEEec
Confidence 2 22 2222111 0222 46 7889999999999999988774
No 113
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=98.84 E-value=4.7e-09 Score=103.49 Aligned_cols=121 Identities=16% Similarity=0.159 Sum_probs=75.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCC---------------CccccCCCCCCCCCCC--
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPAL---------------TKGYLFPLDKKPARLP-- 112 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l---------------~~~~~~~~~~~~~~~~-- 112 (488)
++++|+|||||++|+++|..|++.|. +|+|+|+.+......... ...+.. .......+.
T Consensus 10 ~~~dVvIVGaG~aGl~~A~~L~~~G~---~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~ 85 (379)
T 3alj_A 10 KTRRAEVAGGGFAGLTAAIALKQNGW---DVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQ-GSHTPPTYETW 85 (379)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHT-TCBCCSCEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC---CEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHh-hCCCccceEEE
Confidence 45899999999999999999999987 899999986542110000 000000 000000000
Q ss_pred --Ccc--ccc--CC--------CCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCC
Q 011351 113 --GFH--TCV--GS--------GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 113 --~~~--~~~--~~--------~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
+.. ... +. .....+.+.+.+.|++++.+++|++++.+. .|++.+|+++.+|.||.|+|....
T Consensus 86 ~~g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~v~~~~g~~~~ad~vV~AdG~~s~ 161 (379)
T 3alj_A 86 MHNKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVG-RLTLQTGEVLEADLIVGADGVGSK 161 (379)
T ss_dssp ETTEEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEETTT-EEEETTSCEEECSEEEECCCTTCH
T ss_pred eCCceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEeCC-EEEECCCCEEEcCEEEECCCccHH
Confidence 000 000 00 000112334456799999999999998755 888889989999999999998653
No 114
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=98.83 E-value=7.6e-09 Score=105.98 Aligned_cols=124 Identities=18% Similarity=0.219 Sum_probs=75.9
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--------------CCC---CCCC-cc-ccCCCCCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--------------YER---PALT-KG-YLFPLDKKPA 109 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--------------~~~---~~l~-~~-~~~~~~~~~~ 109 (488)
...+||+|||||++|++||..|++.|+ +|+|||+.+... ... .... .+ ..+.......
T Consensus 105 ~~~~DVVIVGgGpaGL~aA~~La~~G~---kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~ 181 (549)
T 3nlc_A 105 NLTERPIVIGFGPCGLFAGLVLAQMGF---NPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYS 181 (549)
T ss_dssp TCCCCCEEECCSHHHHHHHHHHHHTTC---CCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCC
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCC---eEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEE
Confidence 345899999999999999999999987 899999985320 000 0000 00 0000000000
Q ss_pred CCCC--c--------------c-c--ccC---------CCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc---EEEeCCC
Q 011351 110 RLPG--F--------------H-T--CVG---------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSG 158 (488)
Q Consensus 110 ~~~~--~--------------~-~--~~~---------~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~---~v~~~~g 158 (488)
.+.. . . . ... ......+.+.+++.|++++++++|+++..++. .|++.+|
T Consensus 182 ~i~~~~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G 261 (549)
T 3nlc_A 182 QVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNG 261 (549)
T ss_dssp CSCCTTCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTS
T ss_pred EeccccccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCC
Confidence 0000 0 0 0 000 00001122344567999999999999987653 4778889
Q ss_pred cEEEeccEEeccCCCCC
Q 011351 159 KLLKYGSLIVATGCTAS 175 (488)
Q Consensus 159 ~~i~yd~lVlAtG~~~~ 175 (488)
+++.+|.||+|+|..+.
T Consensus 262 ~~i~Ad~VVlA~G~~s~ 278 (549)
T 3nlc_A 262 EEIKSRHVVLAVGHSAR 278 (549)
T ss_dssp CEEECSCEEECCCTTCH
T ss_pred CEEECCEEEECCCCChh
Confidence 89999999999998763
No 115
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=98.81 E-value=4.2e-08 Score=97.99 Aligned_cols=67 Identities=15% Similarity=0.188 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc--EEEcCEEEEeecCccCChhhhhcCCc
Q 011351 250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSPFERVGLN 318 (488)
Q Consensus 250 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~ 318 (488)
.+...+.+.+++.|++++.+++|++++..+++....+.+.+|+ ++.+|.||.|+|... .+.+.+++.
T Consensus 107 ~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s--~l~~~~g~~ 175 (421)
T 3nix_A 107 NFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGR--VIPRMFGLD 175 (421)
T ss_dssp HHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGC--HHHHHTTCE
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCch--hhHHhcCCC
Confidence 4556677777788999999999999987655555567778888 799999999999876 333444443
No 116
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=98.80 E-value=1.3e-07 Score=100.45 Aligned_cols=65 Identities=14% Similarity=0.142 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc-EEEcCEEEEeecCccCChhhhhcC
Q 011351 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSPFERVG 316 (488)
Q Consensus 249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~-~i~~D~vi~a~G~~p~~~~~~~~g 316 (488)
..+...+.+.+++.|++++++++|+++..++++ + .|.+.+|+ ++.+|.||+|+|.... .++...+
T Consensus 412 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~-v-~V~t~~G~~~i~Ad~VVlAtG~~s~-~l~~~~~ 477 (689)
T 3pvc_A 412 SDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQ-W-QLTFGQSQAAKHHATVILATGHRLP-EWEQTHH 477 (689)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEECSSS-E-EEEEC-CCCCEEESEEEECCGGGTT-CSTTTTT
T ss_pred HHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCe-E-EEEeCCCcEEEECCEEEECCCcchh-ccccccC
Confidence 467778888888999999999999999875443 3 67888887 7999999999998743 3433333
No 117
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=98.79 E-value=2.3e-08 Score=103.47 Aligned_cols=59 Identities=20% Similarity=0.377 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 249 PSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 249 ~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
..+.+.+.+.+++. |++++.+ +|+++...+++.+..|.+.+|+++.+|.||.|+|....
T Consensus 194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~ 253 (550)
T 2e4g_A 194 HLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGL 253 (550)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCC
T ss_pred HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchh
Confidence 35777888888888 9999999 99999876566777888999988999999999998764
No 118
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=98.77 E-value=7.4e-09 Score=104.40 Aligned_cols=123 Identities=20% Similarity=0.302 Sum_probs=74.2
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-------CCCCCCc-----ccc--CCCCCC-CC----
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-------ERPALTK-----GYL--FPLDKK-PA---- 109 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~-------~~~~l~~-----~~~--~~~~~~-~~---- 109 (488)
.+++||+|||||+||+++|..|++.|. +|+|||+.+...- .+..+.. .++ ...... ..
T Consensus 24 ~~~~dVvIIGgG~aGl~aA~~la~~G~---~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (447)
T 2i0z_A 24 AMHYDVIVIGGGPSGLMAAIGAAEEGA---NVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFS 100 (447)
T ss_dssp -CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHH
T ss_pred cCCCCEEEECCcHHHHHHHHHHHHCCC---CEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHH
Confidence 345899999999999999999999987 8999999864310 0000000 000 000000 00
Q ss_pred CC-----------CCccc---ccC---------CCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc---EEEeCCCcEEEe
Q 011351 110 RL-----------PGFHT---CVG---------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKY 163 (488)
Q Consensus 110 ~~-----------~~~~~---~~~---------~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~---~v~~~~g~~i~y 163 (488)
.+ .+... ..+ ......+.+.+++.+++++.+++|+++..++. .|++.+|+++.+
T Consensus 101 ~~~~~~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~A 180 (447)
T 2i0z_A 101 IFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLET 180 (447)
T ss_dssp HSCHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEEC
T ss_pred hcCHHHHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEEC
Confidence 00 00000 000 00001123344567999999999999975443 477788877999
Q ss_pred ccEEeccCCCC
Q 011351 164 GSLIVATGCTA 174 (488)
Q Consensus 164 d~lVlAtG~~~ 174 (488)
|.||+|||...
T Consensus 181 d~VVlAtGg~s 191 (447)
T 2i0z_A 181 NHVVIAVGGKS 191 (447)
T ss_dssp SCEEECCCCSS
T ss_pred CEEEECCCCCc
Confidence 99999999876
No 119
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=98.77 E-value=1.9e-07 Score=92.64 Aligned_cols=65 Identities=18% Similarity=0.301 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcC
Q 011351 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 316 (488)
Q Consensus 249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~g 316 (488)
..+...+.+.+++.|++++.+++|+++..+ ++.+..|.+.+| ++.+|.||+|+|.... .+.+.++
T Consensus 174 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~~~v~~~~g-~~~a~~vV~a~G~~s~-~l~~~~g 238 (405)
T 2gag_B 174 DHVAWAFARKANEMGVDIIQNCEVTGFIKD-GEKVTGVKTTRG-TIHAGKVALAGAGHSS-VLAEMAG 238 (405)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEES-SSBEEEEEETTC-CEEEEEEEECCGGGHH-HHHHHHT
T ss_pred HHHHHHHHHHHHHCCCEEEcCCeEEEEEEe-CCEEEEEEeCCc-eEECCEEEECCchhHH-HHHHHcC
Confidence 367777888889999999999999999865 456667888888 6999999999998753 3444443
No 120
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=98.77 E-value=8.7e-09 Score=106.07 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351 252 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 306 (488)
Q Consensus 252 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~ 306 (488)
........++.|+++++++.|++|+.. ++.+ .|.+.+|+++.+|.||++++..
T Consensus 215 ~~l~~~l~~~lg~~i~~~~~V~~i~~~-~~~v-~v~~~~g~~~~ad~VI~a~p~~ 267 (520)
T 1s3e_A 215 GQVSERIMDLLGDRVKLERPVIYIDQT-RENV-LVETLNHEMYEAKYVISAIPPT 267 (520)
T ss_dssp HHHHHHHHHHHGGGEESSCCEEEEECS-SSSE-EEEETTSCEEEESEEEECSCGG
T ss_pred HHHHHHHHHHcCCcEEcCCeeEEEEEC-CCeE-EEEECCCeEEEeCEEEECCCHH
Confidence 334444445558999999999999865 4445 4888899999999999998864
No 121
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=98.77 E-value=1.3e-07 Score=98.30 Aligned_cols=61 Identities=20% Similarity=0.250 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC--CCc--EEEcCEEEEeecCccC
Q 011351 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS--TIDADTIVIGIGAKPT 308 (488)
Q Consensus 248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~--~g~--~i~~D~vi~a~G~~p~ 308 (488)
...+...+.+.+++.||++++++.++++..++++++.+|.+. +|+ ++.+|.||+|+|..+.
T Consensus 254 g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~ 318 (572)
T 1d4d_A 254 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK 318 (572)
T ss_dssp HHHHHHHHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred HHHHHHHHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCcc
Confidence 346777888888999999999999999976533777777665 664 6899999999997653
No 122
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=98.75 E-value=1.9e-07 Score=99.05 Aligned_cols=58 Identities=14% Similarity=0.218 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
..+...+.+.+++.|++++++++|+++..++ +.+ .|.+.+|.++.+|.||+|+|....
T Consensus 417 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~-~~v-~V~t~~G~~i~Ad~VVlAtG~~s~ 474 (676)
T 3ps9_A 417 AELTRNVLELAQQQGLQIYYQYQLQNFSRKD-DCW-LLNFAGDQQATHSVVVLANGHQIS 474 (676)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEEET-TEE-EEEETTSCEEEESEEEECCGGGGG
T ss_pred HHHHHHHHHHHHhCCCEEEeCCeeeEEEEeC-CeE-EEEECCCCEEECCEEEECCCcchh
Confidence 4677788888889999999999999998653 344 688888888999999999998743
No 123
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=98.74 E-value=2.9e-08 Score=95.88 Aligned_cols=119 Identities=15% Similarity=0.192 Sum_probs=69.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC---------CCccccCCC-----------------
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA---------LTKGYLFPL----------------- 104 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~---------l~~~~~~~~----------------- 104 (488)
++||+|||||++|+++|..|++.|. +|+|+|+.+........ ....++...
T Consensus 2 ~~dV~IIGaG~~Gl~~A~~L~~~G~---~V~vlE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (336)
T 1yvv_A 2 TVPIAIIGTGIAGLSAAQALTAAGH---QVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFTARDRRFATAVKQWQAQGHV 78 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCGGGCEEEETTEEEECSCCCBCCCSHHHHHHHHHHHHHTSE
T ss_pred CceEEEECCcHHHHHHHHHHHHCCC---cEEEEECCCCCcccceeEecCCCeEecCCCeEecCCHHHHHHHHHHHhCCCe
Confidence 4799999999999999999999987 89999998643100000 000000000
Q ss_pred ------------CCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEE-eccEEec
Q 011351 105 ------------DKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLK-YGSLIVA 169 (488)
Q Consensus 105 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~-yd~lVlA 169 (488)
.....................+.+.+. .+++++++++|++++.+.. +|++.+|+.+. +|+||+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~g~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~a~~vV~a 157 (336)
T 1yvv_A 79 AEWTPLLYNFHAGRLSPSPDEQVRWVGKPGMSAITRAMR-GDMPVSFSCRITEVFRGEEHWNLLDAEGQNHGPFSHVIIA 157 (336)
T ss_dssp EEECCCEEEESSSBCCCCCTTSCEEEESSCTHHHHHHHH-TTCCEECSCCEEEEEECSSCEEEEETTSCEEEEESEEEEC
T ss_pred eeccccceeccCcccccCCCCCccEEcCccHHHHHHHHH-ccCcEEecCEEEEEEEeCCEEEEEeCCCcCccccCEEEEc
Confidence 000000000000000000111112222 3889999999999986543 67778887664 9999999
Q ss_pred cCCC
Q 011351 170 TGCT 173 (488)
Q Consensus 170 tG~~ 173 (488)
+|..
T Consensus 158 ~g~~ 161 (336)
T 1yvv_A 158 TPAP 161 (336)
T ss_dssp SCHH
T ss_pred CCHH
Confidence 9964
No 124
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=98.74 E-value=2.2e-08 Score=101.02 Aligned_cols=66 Identities=23% Similarity=0.393 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEeC--------------CCCcEEEEEeCCCcEE--EcCEEEEeecCccCChhh
Q 011351 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAG--------------SDGRVAAVKLEDGSTI--DADTIVIGIGAKPTVSPF 312 (488)
Q Consensus 249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~--------------~~~~v~~v~l~~g~~i--~~D~vi~a~G~~p~~~~~ 312 (488)
..+...+.+.+++.|++++.+++|+++..+ +++.+..|.+.+| ++ .+|.||+|+|.... .++
T Consensus 181 ~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s~-~l~ 258 (448)
T 3axb_A 181 EKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWSN-RLL 258 (448)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGHH-HHH
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCHH-HHH
Confidence 377788888899999999999999999861 2455657888888 58 99999999998643 455
Q ss_pred hhcC
Q 011351 313 ERVG 316 (488)
Q Consensus 313 ~~~g 316 (488)
+.++
T Consensus 259 ~~~g 262 (448)
T 3axb_A 259 NPLG 262 (448)
T ss_dssp GGGT
T ss_pred HHcC
Confidence 5443
No 125
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=98.72 E-value=5.2e-08 Score=96.62 Aligned_cols=124 Identities=12% Similarity=0.075 Sum_probs=73.6
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-C--CCcc---cc--CCC--CCCCCCCCCc--cc
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-A--LTKG---YL--FPL--DKKPARLPGF--HT 116 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~-~--l~~~---~~--~~~--~~~~~~~~~~--~~ 116 (488)
+++++|+|||||++|+++|..|++.|+ +|+|+|+.+.....+. . +... .+ ... .......... ..
T Consensus 3 ~~~~~V~IVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 79 (397)
T 2vou_A 3 PTTDRIAVVGGSISGLTAALMLRDAGV---DVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVD 79 (397)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEE
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEe
Confidence 456899999999999999999999987 8999999865311100 0 0000 00 000 0000000000 00
Q ss_pred c-cCCC-------CC----CCCHhHHHH--CCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCCCCC
Q 011351 117 C-VGSG-------GE----RQTPEWYKE--KGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 117 ~-~~~~-------~~----~~~~~~~~~--~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
. .+.. .. ..+.+.+.+ .+++++.+++|+++..+. .++++.+|+++.+|.||.|+|....
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 154 (397)
T 2vou_A 80 ALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASV 154 (397)
T ss_dssp TTTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred cCCCCccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcchh
Confidence 0 0000 00 001122222 378999999999997654 3677888988999999999998653
No 126
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=98.71 E-value=2.4e-07 Score=93.06 Aligned_cols=58 Identities=24% Similarity=0.278 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHcCcEEEcCC---eEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351 249 PSLAQRYEQLYQQNGVKFVKGA---SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 307 (488)
Q Consensus 249 ~~~~~~~~~~l~~~GV~v~~~~---~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p 307 (488)
..+...+.+.+++.|+++++++ +|+++... ++.+.+|.+.+|+++.+|.||+|+|...
T Consensus 161 ~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~-~~~v~gV~t~~G~~i~Ad~VV~AtG~~s 221 (438)
T 3dje_A 161 RNALVAAAREAQRMGVKFVTGTPQGRVVTLIFE-NNDVKGAVTADGKIWRAERTFLCAGASA 221 (438)
T ss_dssp HHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEE-TTEEEEEEETTTEEEECSEEEECCGGGG
T ss_pred HHHHHHHHHHHHhcCCEEEeCCcCceEEEEEec-CCeEEEEEECCCCEEECCEEEECCCCCh
Confidence 4677788888899999999999 99999864 5677779999998899999999999764
No 127
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=98.70 E-value=1.3e-08 Score=101.10 Aligned_cols=123 Identities=16% Similarity=0.204 Sum_probs=72.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCC--Cc---------cc---cCCCCCCCC-----C
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPAL--TK---------GY---LFPLDKKPA-----R 110 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l--~~---------~~---~~~~~~~~~-----~ 110 (488)
+++||+|||||++|+++|..|++.|. +|+|+|+.+......... .. +. +........ .
T Consensus 5 ~~~dVvIVGaG~aGl~~A~~L~~~G~---~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 81 (399)
T 2x3n_A 5 NHIDVLINGCGIGGAMLAYLLGRQGH---RVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVY 81 (399)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEE
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCC---cEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEe
Confidence 35799999999999999999999987 899999986531110000 00 00 000000000 0
Q ss_pred CCC--cccccCCC-------C-------CCCCHhHHHHC-CCeEEeCCcEEEEeCCCc----EEEeCCCcEEEeccEEec
Q 011351 111 LPG--FHTCVGSG-------G-------ERQTPEWYKEK-GIEMIYQDPVTSIDIEKQ----TLITNSGKLLKYGSLIVA 169 (488)
Q Consensus 111 ~~~--~~~~~~~~-------~-------~~~~~~~~~~~-~i~~~~~~~v~~id~~~~----~v~~~~g~~i~yd~lVlA 169 (488)
..+ ........ . ...+.+.+++. +++++.+++|++++.++. .+++.+|+++.+|.||.|
T Consensus 82 ~~g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~A 161 (399)
T 2x3n_A 82 HDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGA 161 (399)
T ss_dssp ETTEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEEC
T ss_pred CCCCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEEC
Confidence 000 00000000 0 00011222334 899999999999986543 677888888999999999
Q ss_pred cCCCCC
Q 011351 170 TGCTAS 175 (488)
Q Consensus 170 tG~~~~ 175 (488)
+|....
T Consensus 162 dG~~s~ 167 (399)
T 2x3n_A 162 DGIASY 167 (399)
T ss_dssp CCTTCH
T ss_pred CCCChH
Confidence 998653
No 128
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=98.70 E-value=2.7e-08 Score=103.31 Aligned_cols=123 Identities=21% Similarity=0.302 Sum_probs=73.1
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CCC-------------------------c-ccc
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-ALT-------------------------K-GYL 101 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~-~l~-------------------------~-~~~ 101 (488)
|+.+||+|||||+||+++|..|++.|. +|+|||+.+....... .+. . .+.
T Consensus 21 M~~~DVvIVGgG~AGl~aA~~Lar~G~---~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~ 97 (591)
T 3i3l_A 21 MTRSKVAIIGGGPAGSVAGLTLHKLGH---DVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFL 97 (591)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEE
T ss_pred CCCCCEEEECcCHHHHHHHHHHHcCCC---CEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEE
Confidence 456899999999999999999999987 8999999864322110 000 0 000
Q ss_pred CCCCCCCC------------CCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCC-C--cEEEeC-CC--cEEEe
Q 011351 102 FPLDKKPA------------RLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE-K--QTLITN-SG--KLLKY 163 (488)
Q Consensus 102 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~-~--~~v~~~-~g--~~i~y 163 (488)
........ ..+.............+.+.+++.|++++.+++|+++..+ + ..|++. +| .++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~A 177 (591)
T 3i3l_A 98 WGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVES 177 (591)
T ss_dssp CSSSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEE
T ss_pred ecCCCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEc
Confidence 00000000 0000000000000001123445679999999999999864 2 256665 66 57999
Q ss_pred ccEEeccCCCC
Q 011351 164 GSLIVATGCTA 174 (488)
Q Consensus 164 d~lVlAtG~~~ 174 (488)
|.+|.|+|...
T Consensus 178 dlVV~AdG~~S 188 (591)
T 3i3l_A 178 DFVIDAGGSGG 188 (591)
T ss_dssp SEEEECCGGGC
T ss_pred CEEEECCCCcc
Confidence 99999999754
No 129
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=98.70 E-value=7.1e-08 Score=98.79 Aligned_cols=111 Identities=14% Similarity=0.286 Sum_probs=87.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc----------------------------------------cc-
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----------------------------------------QR- 245 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l----------------------------------------~~- 245 (488)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. ..
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~ 186 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP 186 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence 4679999999999999999999999999999875320 00
Q ss_pred -c-------------c----------------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEE
Q 011351 246 -L-------------F----------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID 295 (488)
Q Consensus 246 -~-------------~----------------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~ 295 (488)
. . ...+.+.+.+.+++.|++++++++|+++... ++.+..|.+.+|+++.
T Consensus 187 ~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~-~~~v~gV~l~~G~~i~ 265 (549)
T 3nlc_A 187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHME-DGQITGVTLSNGEEIK 265 (549)
T ss_dssp TCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEES-SSBEEEEEETTSCEEE
T ss_pred cccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEe-CCEEEEEEECCCCEEE
Confidence 0 0 0345566777788899999999999999864 5667789999999999
Q ss_pred cCEEEEeecCccCCh--hhhhcCCc
Q 011351 296 ADTIVIGIGAKPTVS--PFERVGLN 318 (488)
Q Consensus 296 ~D~vi~a~G~~p~~~--~~~~~gl~ 318 (488)
||.||+|+|..+... ++...|+.
T Consensus 266 Ad~VVlA~G~~s~~~~~~l~~~Gi~ 290 (549)
T 3nlc_A 266 SRHVVLAVGHSARDTFEMLHERGVY 290 (549)
T ss_dssp CSCEEECCCTTCHHHHHHHHHTTCC
T ss_pred CCEEEECCCCChhhHHHHHHHcCCC
Confidence 999999999988522 34555554
No 130
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=98.68 E-value=1.7e-08 Score=104.58 Aligned_cols=122 Identities=16% Similarity=0.136 Sum_probs=70.8
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC---------------CCCCccccCCCCCCCCC-CCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER---------------PALTKGYLFPLDKKPAR-LPG 113 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~---------------~~l~~~~~~~~~~~~~~-~~~ 113 (488)
+++||+|||||++|+++|..|++.|+ +|+|||+.+...... ..+...+.......... +.+
T Consensus 48 ~~~DVvIVGaG~aGL~~A~~La~~G~---~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~ 124 (570)
T 3fmw_A 48 LTTDVVVVGGGPVGLMLAGELRAGGV---GALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAG 124 (570)
T ss_dssp ---CEEEECCSHHHHHHHHHHHHTTC---CEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTT
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCC
Confidence 46799999999999999999999988 899999986532110 00000000000000000 000
Q ss_pred c-------ccccC-CCCC---------CCCHhHHHHCCCeEEeCCcEEEEeCCCc--EEEe--CCC-cEEEeccEEeccC
Q 011351 114 F-------HTCVG-SGGE---------RQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLIT--NSG-KLLKYGSLIVATG 171 (488)
Q Consensus 114 ~-------~~~~~-~~~~---------~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~--~~g-~~i~yd~lVlAtG 171 (488)
. ..... .... ..+.+.+++.+++++.+++|++++.+.. ++++ .+| +++.+|+||.|.|
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG 204 (570)
T 3fmw_A 125 IFTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDG 204 (570)
T ss_dssp BCTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSC
T ss_pred cccccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCC
Confidence 0 00000 0000 0112333456899999999999977654 4555 677 6899999999999
Q ss_pred CCC
Q 011351 172 CTA 174 (488)
Q Consensus 172 ~~~ 174 (488)
...
T Consensus 205 ~~S 207 (570)
T 3fmw_A 205 GRS 207 (570)
T ss_dssp SSC
T ss_pred CCc
Confidence 864
No 131
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=98.67 E-value=2.7e-07 Score=89.62 Aligned_cols=97 Identities=16% Similarity=0.159 Sum_probs=78.1
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc---------------------c-cC---------HHHHHHHH
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR---------------------L-FT---------PSLAQRYE 256 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~---------------------~-~~---------~~~~~~~~ 256 (488)
.+++|||+|+.|+.+|..|++.|.+|+++++.+.+... . .+ ..+.+.+.
T Consensus 4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (357)
T 4a9w_A 4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA 83 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence 36999999999999999999999999999988653110 0 00 57788888
Q ss_pred HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351 257 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 306 (488)
Q Consensus 257 ~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~ 306 (488)
+.+++.|++++++++|++++.. ++.+..|.+.+| ++.+|.||+|+|..
T Consensus 84 ~~~~~~~~~~~~~~~v~~i~~~-~~~~~~v~~~~g-~~~~d~vV~AtG~~ 131 (357)
T 4a9w_A 84 QYEQKYALPVLRPIRVQRVSHF-GERLRVVARDGR-QWLARAVISATGTW 131 (357)
T ss_dssp HHHHHTTCCEECSCCEEEEEEE-TTEEEEEETTSC-EEEEEEEEECCCSG
T ss_pred HHHHHcCCEEEcCCEEEEEEEC-CCcEEEEEeCCC-EEEeCEEEECCCCC
Confidence 8889999999999999999865 333322777777 79999999999963
No 132
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=98.66 E-value=1.6e-07 Score=93.17 Aligned_cols=122 Identities=14% Similarity=0.144 Sum_probs=72.1
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccc-cCCCC-----------------CCC--
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGY-LFPLD-----------------KKP-- 108 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~-~~~~~-----------------~~~-- 108 (488)
+++++|+|||||++|+++|..|++.|. +|+|+|+.+......... .+ +.+.. ..+
T Consensus 24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~g~--~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~ 98 (398)
T 2xdo_A 24 LSDKNVAIIGGGPVGLTMAKLLQQNGI---DVSVYERDNDREARIFGG--TLDLHKGSGQEAMKKAGLLQTYYDLALPMG 98 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTC---EEEEEECSSSTTCCCCSC--CEECCTTTHHHHHHHTTCHHHHHHHCBCCC
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEeCCCCccccccCC--eeeeCCccHHHHHHhcChHHHHHHhhcccc
Confidence 446899999999999999999999987 899999986532210000 00 00000 000
Q ss_pred ---CCCCCccccc------C-CCCCC----CCHhHHHHC--CCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEecc
Q 011351 109 ---ARLPGFHTCV------G-SGGER----QTPEWYKEK--GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVAT 170 (488)
Q Consensus 109 ---~~~~~~~~~~------~-~~~~~----~~~~~~~~~--~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAt 170 (488)
....+..... . ..... .+.+.+.+. +++++++++|++++.+.. ++++.+|+++.+|.||.|+
T Consensus 99 ~~~~~~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~Ad 178 (398)
T 2xdo_A 99 VNIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILAN 178 (398)
T ss_dssp EEEECSSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECS
T ss_pred eEEECCCCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECC
Confidence 0000000000 0 00000 011122221 357888999999986543 6778888889999999999
Q ss_pred CCCCC
Q 011351 171 GCTAS 175 (488)
Q Consensus 171 G~~~~ 175 (488)
|....
T Consensus 179 G~~S~ 183 (398)
T 2xdo_A 179 GGMSK 183 (398)
T ss_dssp CTTCS
T ss_pred Ccchh
Confidence 98654
No 133
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=98.62 E-value=7.5e-08 Score=93.38 Aligned_cols=118 Identities=18% Similarity=0.247 Sum_probs=70.3
Q ss_pred CeEEEEcCchHHHHHHHHHHH---cCCCCCcEEEEcCCCCCCCC----CC-C---CC----ccccCCCCC----------
Q 011351 52 REFVIVGGGNAAGYAARTFVE---HGMADGRLCIVSKEAYAPYE----RP-A---LT----KGYLFPLDK---------- 106 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~---~g~~~~~V~lie~~~~~~~~----~~-~---l~----~~~~~~~~~---------- 106 (488)
+||+|||||++|+++|+.|++ .|+ +|+|+|+++..... +. . .. ..++.....
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~---~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~ 78 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPL---YLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYD 78 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCE---EEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHH
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCc---eEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHH
Confidence 589999999999999999999 776 89999998643210 00 0 00 000000000
Q ss_pred ------CCCCC----------CCcccccCCCCCCCCH-hHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEE
Q 011351 107 ------KPARL----------PGFHTCVGSGGERQTP-EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLI 167 (488)
Q Consensus 107 ------~~~~~----------~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lV 167 (488)
....+ ..............+. .+.+..+++++++++|++|..++. +|++.+|+.+.+|+||
T Consensus 79 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV 158 (342)
T 3qj4_A 79 ELLAYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIV 158 (342)
T ss_dssp HHHHTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEE
T ss_pred HHHhCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEE
Confidence 00000 0000111111111122 233445899999999999987543 6777788878999999
Q ss_pred eccCC
Q 011351 168 VATGC 172 (488)
Q Consensus 168 lAtG~ 172 (488)
+|+..
T Consensus 159 ~A~p~ 163 (342)
T 3qj4_A 159 LTMPV 163 (342)
T ss_dssp ECSCH
T ss_pred ECCCH
Confidence 99974
No 134
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=98.62 E-value=4.4e-08 Score=96.94 Aligned_cols=121 Identities=16% Similarity=0.177 Sum_probs=71.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCC---Cccc-----cCCCCCC-CCCC--------CC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPAL---TKGY-----LFPLDKK-PARL--------PG 113 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l---~~~~-----~~~~~~~-~~~~--------~~ 113 (488)
++||+|||||+||+++|..|++.|. +|+|+|+++......... +... +...... .... .+
T Consensus 4 ~~dVvIvG~G~aGl~~A~~La~~G~---~V~l~E~~~~~g~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 80 (397)
T 3cgv_A 4 TYDVLVVGGGPGGSTAARYAAKYGL---KTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSE 80 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCC---CEEEEeCCCCCCCCcccccccCHHHHHHcCCCCChHHhhhhcceEEEEcCCC
Confidence 4799999999999999999999987 899999987432211000 0000 0000000 0000 00
Q ss_pred cc--cccCC------CC-------CCCCHhHHHHCCCeEEeCCcEEEEeCCCcE---EEe---CCCcEEEeccEEeccCC
Q 011351 114 FH--TCVGS------GG-------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQT---LIT---NSGKLLKYGSLIVATGC 172 (488)
Q Consensus 114 ~~--~~~~~------~~-------~~~~~~~~~~~~i~~~~~~~v~~id~~~~~---v~~---~~g~~i~yd~lVlAtG~ 172 (488)
.. ..... .+ ...+.+.+.+.|++++.+++|+++..++.. |++ .++.++.+|.||.|+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~a~~vV~A~G~ 160 (397)
T 3cgv_A 81 KRPIILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGF 160 (397)
T ss_dssp SSCEEEC-----CCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCCT
T ss_pred CEEEEEeccccCCceeEEEeHHHHHHHHHHHHHhCCCEEEECCEEEEEEEeCCEEEEEEEEECCeEEEEEcCEEEECCCc
Confidence 00 00000 00 001122334569999999999999876553 444 34567999999999997
Q ss_pred CC
Q 011351 173 TA 174 (488)
Q Consensus 173 ~~ 174 (488)
..
T Consensus 161 ~s 162 (397)
T 3cgv_A 161 ES 162 (397)
T ss_dssp TC
T ss_pred ch
Confidence 65
No 135
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=98.62 E-value=2.9e-07 Score=90.72 Aligned_cols=79 Identities=18% Similarity=0.400 Sum_probs=57.4
Q ss_pred CcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh
Q 011351 231 LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 310 (488)
Q Consensus 231 ~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~ 310 (488)
....++.+.+..+. +..+...+.+.+++.|++++.+++|++++..+++ + .+.+.+| ++.+|.||+|+|...+ .
T Consensus 135 ~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~-~-~v~~~~g-~~~a~~vV~A~G~~~~-~ 207 (389)
T 2gf3_A 135 NYNAIFEPNSGVLF---SENCIRAYRELAEARGAKVLTHTRVEDFDISPDS-V-KIETANG-SYTADKLIVSMGAWNS-K 207 (389)
T ss_dssp TEEEEEETTCEEEE---HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSC-E-EEEETTE-EEEEEEEEECCGGGHH-H
T ss_pred CceEEEeCCCcEEe---HHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCe-E-EEEeCCC-EEEeCEEEEecCccHH-H
Confidence 34566666554443 3567788888899999999999999999865433 3 4666666 6999999999998754 4
Q ss_pred hhhhcC
Q 011351 311 PFERVG 316 (488)
Q Consensus 311 ~~~~~g 316 (488)
++..++
T Consensus 208 l~~~~g 213 (389)
T 2gf3_A 208 LLSKLN 213 (389)
T ss_dssp HGGGGT
T ss_pred Hhhhhc
Confidence 555444
No 136
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=98.62 E-value=5.4e-08 Score=91.78 Aligned_cols=122 Identities=10% Similarity=0.100 Sum_probs=69.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCCCCCCCCCCCCCccccCC----CC--------CCCCCC-CCcc
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYAPYERPALTKGYLFP----LD--------KKPARL-PGFH 115 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~lie~~~~~~~~~~~l~~~~~~~----~~--------~~~~~~-~~~~ 115 (488)
.++||+|||||++|+++|..|++. |. +|+|||+.+...... ......+.. .. ..+... ..+.
T Consensus 38 ~~~dVvIIGgG~aGl~aA~~la~~~G~---~V~viEk~~~~gg~~-~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~ 113 (284)
T 1rp0_A 38 AETDVVVVGAGSAGLSAAYEISKNPNV---QVAIIEQSVSPGGGA-WLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYV 113 (284)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTTS---CEEEEESSSSCCTTT-TCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEE
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCC---eEEEEECCCCCCCce-ecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEE
Confidence 457999999999999999999997 76 899999987542110 000000000 00 000000 0000
Q ss_pred cc-cCCCCCCCCHhHHHH-CCCeEEeCCcEEEEeCCCcEE---EeC---------CC-----cEEEeccEEeccCCCCC
Q 011351 116 TC-VGSGGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQTL---ITN---------SG-----KLLKYGSLIVATGCTAS 175 (488)
Q Consensus 116 ~~-~~~~~~~~~~~~~~~-~~i~~~~~~~v~~id~~~~~v---~~~---------~g-----~~i~yd~lVlAtG~~~~ 175 (488)
.. ........+.+.+.+ .+++++.+++|+++..+...+ .+. ++ ..+.+|.+|+|||..+.
T Consensus 114 ~~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~ 192 (284)
T 1rp0_A 114 VVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGP 192 (284)
T ss_dssp EESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSST
T ss_pred EecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchH
Confidence 00 000000011222333 589999999999998665432 332 22 56999999999997654
No 137
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=98.59 E-value=7.4e-08 Score=96.26 Aligned_cols=57 Identities=14% Similarity=0.279 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
...+.+.+.+.+++.|+++++++.|+++..+ ++++ | ..+|+++.+|.||+|+|....
T Consensus 188 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~v--V-~~~g~~~~ad~Vv~a~~~~~~ 244 (421)
T 3nrn_A 188 CKAVIDELERIIMENKGKILTRKEVVEINIE-EKKV--Y-TRDNEEYSFDVAISNVGVRET 244 (421)
T ss_dssp HHHHHHHHHHHHHTTTCEEESSCCEEEEETT-TTEE--E-ETTCCEEECSEEEECSCHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCeEEEEEEE-CCEE--E-EeCCcEEEeCEEEECCCHHHH
Confidence 3567888889999999999999999999854 4544 4 567888999999999997643
No 138
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=98.58 E-value=7.5e-08 Score=99.40 Aligned_cols=38 Identities=18% Similarity=0.343 Sum_probs=34.1
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 89 (488)
.++++|+|||||++|+++|..|++.|. +|+|||+.+..
T Consensus 3 ~~~~dVlIVGaG~aGl~~A~~La~~G~---~v~viEr~~~~ 40 (535)
T 3ihg_A 3 DHEVDVLVVGAGLGGLSTAMFLARQGV---RVLVVERRPGL 40 (535)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHTTTC---CEEEECSSSSC
T ss_pred CccCcEEEECcCHHHHHHHHHHHHCCC---CEEEEeCCCCC
Confidence 456899999999999999999999988 89999998753
No 139
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=98.58 E-value=1.9e-08 Score=99.05 Aligned_cols=64 Identities=17% Similarity=0.132 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcC
Q 011351 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 316 (488)
Q Consensus 249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~g 316 (488)
..+...+.+.+++.|+++++++.|+++..+++ . ..|.+.+| ++.+|.||+|+|.... .+++.++
T Consensus 154 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~-~-~~V~t~~g-~i~a~~VV~A~G~~s~-~l~~~~g 217 (381)
T 3nyc_A 154 DALHQGYLRGIRRNQGQVLCNHEALEIRRVDG-A-WEVRCDAG-SYRAAVLVNAAGAWCD-AIAGLAG 217 (381)
T ss_dssp HHHHHHHHHHHHHTTCEEESSCCCCEEEEETT-E-EEEECSSE-EEEESEEEECCGGGHH-HHHHHHT
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCC-e-EEEEeCCC-EEEcCEEEECCChhHH-HHHHHhC
Confidence 46777788888999999999999999986533 3 46788777 7999999999998653 3444443
No 140
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=98.57 E-value=5.5e-08 Score=99.79 Aligned_cols=124 Identities=17% Similarity=0.215 Sum_probs=72.4
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CC-C---cccc--CC-------CCCCCC-----
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-AL-T---KGYL--FP-------LDKKPA----- 109 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~-~l-~---~~~~--~~-------~~~~~~----- 109 (488)
++++||+|||||++|+++|..|++.|+ +|+|||+.+...+... .+ + ..++ .. ......
T Consensus 5 ~~~~dVvIVGgG~aGl~aA~~La~~G~---~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~ 81 (512)
T 3e1t_A 5 PEVFDLIVIGGGPGGSTLASFVAMRGH---RVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTF 81 (512)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHTTTC---CEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEE
T ss_pred CccCCEEEECcCHHHHHHHHHHHhCCC---CEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceE
Confidence 345799999999999999999999987 8999999873321100 00 0 0000 00 000000
Q ss_pred CCCC--------ccc--ccCCCCC---------CCCHhHHHHCCCeEEeCCcEEEEeCCCcE---EE--eCCCc--EEEe
Q 011351 110 RLPG--------FHT--CVGSGGE---------RQTPEWYKEKGIEMIYQDPVTSIDIEKQT---LI--TNSGK--LLKY 163 (488)
Q Consensus 110 ~~~~--------~~~--~~~~~~~---------~~~~~~~~~~~i~~~~~~~v~~id~~~~~---v~--~~~g~--~i~y 163 (488)
.... +.. ....... ..+.+.+.+.|++++.+++|+++..++.. |+ ..+|+ ++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~a 161 (512)
T 3e1t_A 82 RWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHA 161 (512)
T ss_dssp ECSSCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEE
T ss_pred EecCCccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEc
Confidence 0000 000 0000000 01123345579999999999999876653 33 34564 7999
Q ss_pred ccEEeccCCCCC
Q 011351 164 GSLIVATGCTAS 175 (488)
Q Consensus 164 d~lVlAtG~~~~ 175 (488)
|.||.|+|....
T Consensus 162 d~VI~AdG~~S~ 173 (512)
T 3e1t_A 162 RFIVDASGNRTR 173 (512)
T ss_dssp EEEEECCCTTCS
T ss_pred CEEEECCCcchH
Confidence 999999998654
No 141
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=98.56 E-value=3.7e-08 Score=97.09 Aligned_cols=46 Identities=30% Similarity=0.338 Sum_probs=36.5
Q ss_pred hHHHHCCCeEEeCCcEEEEeCCCcE---EEeCCCcEEEeccEEeccCCCC
Q 011351 128 EWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTA 174 (488)
Q Consensus 128 ~~~~~~~i~~~~~~~v~~id~~~~~---v~~~~g~~i~yd~lVlAtG~~~ 174 (488)
+.+++.|++++.+++|+++..++.. |++.+| ++.+|+||+|+|...
T Consensus 157 ~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s 205 (382)
T 1y56_B 157 VKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWA 205 (382)
T ss_dssp HHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred HHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhH
Confidence 4456679999999999999866543 566666 699999999999754
No 142
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=98.55 E-value=3e-07 Score=88.44 Aligned_cols=100 Identities=18% Similarity=0.239 Sum_probs=81.0
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc------------------cCHHHHHHHHHHHHHcCcEEEcC
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------------------FTPSLAQRYEQLYQQNGVKFVKG 269 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~------------------~~~~~~~~~~~~l~~~GV~v~~~ 269 (488)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+-... ...++...+.+.+++.|++++++
T Consensus 8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (332)
T 3lzw_A 8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLE 87 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEECS
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEcc
Confidence 579999999999999999999999999999976432110 12567778888888889999999
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC---ccCC
Q 011351 270 ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA---KPTV 309 (488)
Q Consensus 270 ~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~---~p~~ 309 (488)
++|++++..+++. ..+.+.+|+ +.+|.||+|+|. .|..
T Consensus 88 ~~v~~i~~~~~~~-~~v~~~~g~-~~~d~vVlAtG~~~~~p~~ 128 (332)
T 3lzw_A 88 QAVESVEKQADGV-FKLVTNEET-HYSKTVIITAGNGAFKPRK 128 (332)
T ss_dssp CCEEEEEECTTSC-EEEEESSEE-EEEEEEEECCTTSCCEECC
T ss_pred CEEEEEEECCCCc-EEEEECCCE-EEeCEEEECCCCCcCCCCC
Confidence 9999998754423 357788886 999999999999 6653
No 143
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=98.54 E-value=4.2e-08 Score=96.86 Aligned_cols=37 Identities=27% Similarity=0.467 Sum_probs=33.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 89 (488)
+++||+||||||||+++|..|+++|+ +|+|+|+.+..
T Consensus 3 e~yDViIVGaGpaGl~~A~~La~~G~---~V~v~Er~~~~ 39 (397)
T 3oz2_A 3 ETYDVLVVGGGPGGSTAARYAAKYGL---KTLMIEKRPEI 39 (397)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSST
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCC
Confidence 35899999999999999999999998 89999997654
No 144
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=98.54 E-value=9.1e-08 Score=94.21 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=33.2
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
..++||+|||||++|+++|+.|++.|. +|+|||++..
T Consensus 15 ~~~~dvvIIGgG~~Gl~~A~~La~~G~---~V~llE~~~~ 51 (382)
T 1ryi_A 15 KRHYEAVVIGGGIIGSAIAYYLAKENK---NTALFESGTM 51 (382)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSST
T ss_pred CCCCCEEEECcCHHHHHHHHHHHhCCC---cEEEEeCCCC
Confidence 446899999999999999999999987 8999999753
No 145
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=98.54 E-value=6.2e-08 Score=96.37 Aligned_cols=125 Identities=11% Similarity=0.035 Sum_probs=70.6
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---------------CC-----------Ccc-c
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---------------AL-----------TKG-Y 100 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~---------------~l-----------~~~-~ 100 (488)
.++++||+|||||++|+++|..|++.|+ +|+|+|+.+....... .+ ... +
T Consensus 20 ~~~~~dV~IVGaG~aGl~~A~~La~~G~---~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~ 96 (407)
T 3rp8_A 20 FQGHMKAIVIGAGIGGLSAAVALKQSGI---DCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAY 96 (407)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEE
Confidence 3456899999999999999999999988 8999999865311000 00 000 0
Q ss_pred cCCC-CCCCCCCCCcc--cc-cCCCCCC---CCHhHHHH--CCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEec
Q 011351 101 LFPL-DKKPARLPGFH--TC-VGSGGER---QTPEWYKE--KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVA 169 (488)
Q Consensus 101 ~~~~-~~~~~~~~~~~--~~-~~~~~~~---~~~~~~~~--~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlA 169 (488)
.... ......++... .. ....+.. .+.+.+.+ ..++++.+++|++++.+.. ++++.+|+++.+|.||.|
T Consensus 97 ~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~A 176 (407)
T 3rp8_A 97 RDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAA 176 (407)
T ss_dssp EETTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCGGGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEEC
T ss_pred EECCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCcCEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEEC
Confidence 0000 00000000000 00 0000000 01111111 1278889999999987654 567788999999999999
Q ss_pred cCCCCC
Q 011351 170 TGCTAS 175 (488)
Q Consensus 170 tG~~~~ 175 (488)
+|....
T Consensus 177 dG~~S~ 182 (407)
T 3rp8_A 177 DGSHSA 182 (407)
T ss_dssp CCTTCS
T ss_pred CCcChH
Confidence 997643
No 146
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=98.53 E-value=5.1e-07 Score=89.73 Aligned_cols=100 Identities=22% Similarity=0.283 Sum_probs=78.7
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc---------------------------------------
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL--------------------------------------- 246 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~--------------------------------------- 246 (488)
...+|+|||+|+.|+.+|..|++.|.+|+++++.+.+..+.
T Consensus 26 ~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 105 (417)
T 3v76_A 26 EKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQD 105 (417)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHH
Confidence 34579999999999999999999999999999876432100
Q ss_pred ------------------------cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEe
Q 011351 247 ------------------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 302 (488)
Q Consensus 247 ------------------------~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a 302 (488)
....+.+.+.+.+++.|++++++++|+++..+++ . ..|.+.+| ++.+|.||+|
T Consensus 106 ~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~-~-~~V~~~~g-~i~ad~VIlA 182 (417)
T 3v76_A 106 FVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTAS-G-FRVTTSAG-TVDAASLVVA 182 (417)
T ss_dssp HHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETT-E-EEEEETTE-EEEESEEEEC
T ss_pred HHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCC-E-EEEEECCc-EEEeeEEEEC
Confidence 0124566777888889999999999999986533 3 36778887 7999999999
Q ss_pred ecCccC
Q 011351 303 IGAKPT 308 (488)
Q Consensus 303 ~G~~p~ 308 (488)
+|..+.
T Consensus 183 tG~~S~ 188 (417)
T 3v76_A 183 SGGKSI 188 (417)
T ss_dssp CCCSSC
T ss_pred CCCccC
Confidence 998863
No 147
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=98.53 E-value=6.1e-08 Score=98.99 Aligned_cols=121 Identities=15% Similarity=0.204 Sum_probs=73.2
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-C--------------CCCCccccCCCCCCCCC--
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-R--------------PALTKGYLFPLDKKPAR-- 110 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~-~--------------~~l~~~~~~~~~~~~~~-- 110 (488)
..++++|+|||||++|+++|..|++.|. +|+|||+.+..... + ..+...+... .+..
T Consensus 8 ~~~~~dVlIVGaGpaGl~~A~~La~~G~---~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~---~~~~~~ 81 (500)
T 2qa1_A 8 HRSDAAVIVVGAGPAGMMLAGELRLAGV---EVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEV---ETSTQG 81 (500)
T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSC---CBCCEE
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhc---cccccc
Confidence 3456899999999999999999999988 89999998653211 0 0000000000 0000
Q ss_pred -CCCcc-ccc--CCC-----------CCCCCHhHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCc---EEEeccEEecc
Q 011351 111 -LPGFH-TCV--GSG-----------GERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGK---LLKYGSLIVAT 170 (488)
Q Consensus 111 -~~~~~-~~~--~~~-----------~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~---~i~yd~lVlAt 170 (488)
+.+.. ... ... ....+.+.+.+.+++++.+++|+++..+.. ++++.++. ++.+|+||.|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgAD 161 (500)
T 2qa1_A 82 HFGGLPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCD 161 (500)
T ss_dssp EETTEEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECC
T ss_pred cccceecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECC
Confidence 00000 000 000 000112334556899999999999976554 45555654 79999999999
Q ss_pred CCCC
Q 011351 171 GCTA 174 (488)
Q Consensus 171 G~~~ 174 (488)
|...
T Consensus 162 G~~S 165 (500)
T 2qa1_A 162 GGRS 165 (500)
T ss_dssp CTTC
T ss_pred Ccch
Confidence 9865
No 148
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=98.50 E-value=1.1e-07 Score=98.81 Aligned_cols=38 Identities=24% Similarity=0.417 Sum_probs=33.9
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 89 (488)
...+||||||||+||++||..|++.|. +|+|||+.+..
T Consensus 119 ~~~~DVvVVG~G~aGl~aA~~la~~G~---~V~vlEk~~~~ 156 (566)
T 1qo8_A 119 SETTQVLVVGAGSAGFNASLAAKKAGA---NVILVDKAPFS 156 (566)
T ss_dssp SEEEEEEEECCSHHHHHHHHHHHHHTC---CEEEECSSSSS
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCC
Confidence 345799999999999999999999987 89999998754
No 149
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=98.50 E-value=1.5e-07 Score=97.77 Aligned_cols=37 Identities=27% Similarity=0.437 Sum_probs=33.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 89 (488)
..+||||||||+||++||..|++.|. +|+|||+.+..
T Consensus 125 ~~~DVvVVGaG~aGl~aA~~la~~G~---~V~vlEk~~~~ 161 (571)
T 1y0p_A 125 DTVDVVVVGSGGAGFSAAISATDSGA---KVILIEKEPVI 161 (571)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCC
Confidence 35899999999999999999999987 89999998754
No 150
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=98.50 E-value=1.6e-07 Score=95.81 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=73.0
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-C--------------CCCCccccCCCCCCCCCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-R--------------PALTKGYLFPLDKKPARLPG 113 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~-~--------------~~l~~~~~~~~~~~~~~~~~ 113 (488)
.++++|+|||||++|+++|..|++.|. +|+|||+.+..... + ..+...+..........+.+
T Consensus 10 ~~~~dVlIVGaGpaGl~~A~~La~~G~---~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 86 (499)
T 2qa2_A 10 RSDASVIVVGAGPAGLMLAGELRLGGV---DVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGG 86 (499)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETT
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecc
Confidence 456899999999999999999999988 89999998653211 0 00000000000000000000
Q ss_pred cc-ccc--CCC-----------CCCCCHhHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCc---EEEeccEEeccCCCC
Q 011351 114 FH-TCV--GSG-----------GERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGK---LLKYGSLIVATGCTA 174 (488)
Q Consensus 114 ~~-~~~--~~~-----------~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~---~i~yd~lVlAtG~~~ 174 (488)
.. ... ... ....+.+.+.+.+++++.+++|++++.+.. ++++.++. ++.+|+||.|.|...
T Consensus 87 ~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S 166 (499)
T 2qa2_A 87 RPVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRS 166 (499)
T ss_dssp EEEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTC
T ss_pred eecccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCccc
Confidence 00 000 000 000112334556899999999999976543 56666664 799999999999865
No 151
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=98.49 E-value=1.5e-07 Score=95.16 Aligned_cols=99 Identities=17% Similarity=0.285 Sum_probs=75.2
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++++|||||++|+.+|..|++.|. +|+|+++.+... |... ..+ .....+.
T Consensus 166 ~~~~vvIiGgG~~g~e~A~~l~~~g~---~V~lv~~~~~~l---~~~~-----------~~~-----------~~~l~~~ 217 (455)
T 2yqu_A 166 VPKRLIVVGGGVIGLELGVVWHRLGA---EVIVLEYMDRIL---PTMD-----------LEV-----------SRAAERV 217 (455)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSC---TTSC-----------HHH-----------HHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC---EEEEEecCCccc---cccC-----------HHH-----------HHHHHHH
Confidence 35799999999999999999999886 899999876521 1000 000 0123556
Q ss_pred HHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCCc
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR 176 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~~ 176 (488)
+++.|++++.+++|++++.++. .+.+.+++++.+|.||+|+|..|..
T Consensus 218 l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~ 266 (455)
T 2yqu_A 218 FKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYT 266 (455)
T ss_dssp HHHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred HHHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCC
Confidence 7788999999999999987654 4555688889999999999988753
No 152
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=98.49 E-value=1.8e-07 Score=92.17 Aligned_cols=101 Identities=24% Similarity=0.400 Sum_probs=77.8
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc-c-ccC---------HHHHHHHHHHHHHcCcEEEcCCeEEE
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-R-LFT---------PSLAQRYEQLYQQNGVKFVKGASIKN 274 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~-~-~~~---------~~~~~~~~~~l~~~GV~v~~~~~v~~ 274 (488)
...+|+|||+|+.|+.+|..|...+.+|+++++.+.+.. + .++ .++.....+.+++.||+++++++|++
T Consensus 8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~ 87 (385)
T 3klj_A 8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATS 87 (385)
T ss_dssp CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEE
T ss_pred CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEE
Confidence 345799999999999999999778889999998876421 1 011 11112234667888999999999999
Q ss_pred EEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh
Q 011351 275 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 310 (488)
Q Consensus 275 i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~ 310 (488)
++.. .. .|.+++|+++.+|.+|+|||.+|...
T Consensus 88 id~~-~~---~v~~~~g~~~~yd~lvlAtG~~p~~p 119 (385)
T 3klj_A 88 IDPN-NK---LVTLKSGEKIKYEKLIIASGSIANKI 119 (385)
T ss_dssp EETT-TT---EEEETTSCEEECSEEEECCCEEECCC
T ss_pred EECC-CC---EEEECCCCEEECCEEEEecCCCcCCC
Confidence 9854 22 57889999999999999999988753
No 153
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=98.49 E-value=3.2e-07 Score=95.41 Aligned_cols=37 Identities=38% Similarity=0.553 Sum_probs=33.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHc------CCCCCcEEEEcCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEH------GMADGRLCIVSKEAYA 89 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~------g~~~~~V~lie~~~~~ 89 (488)
+.+||+|||||+||+++|..|++. |. +|+|||+.+..
T Consensus 34 ~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~---~V~vlEk~~~~ 76 (584)
T 2gmh_A 34 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDL---RVCLVEKAAHI 76 (584)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHHHTTCCC---CEEEECSSSST
T ss_pred cCCCEEEECcCHHHHHHHHHHHhcccccCCCC---cEEEEeCCCCC
Confidence 358999999999999999999998 77 89999998654
No 154
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=98.49 E-value=3.3e-08 Score=99.83 Aligned_cols=123 Identities=18% Similarity=0.282 Sum_probs=71.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-CCCC---CCccccC--C-CCCCCC----CCCCcccc-
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-ERPA---LTKGYLF--P-LDKKPA----RLPGFHTC- 117 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~-~~~~---l~~~~~~--~-~~~~~~----~~~~~~~~- 117 (488)
+++||+|||||+||+++|..|++.|. +|+|+|+.+.... ..+. +....+. . ...... ...+....
T Consensus 5 ~~~dVvIVGaG~aGl~aA~~La~~G~---~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 81 (453)
T 3atr_A 5 LKYDVLIIGGGFAGSSAAYQLSRRGL---KILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYS 81 (453)
T ss_dssp EECSEEEECCSHHHHHHHHHHSSSSC---CEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEEC
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEEC
Confidence 35899999999999999999999987 8999999864211 1000 0000000 0 000000 00000000
Q ss_pred ---------cCCC-------CCCCCHhHHHHCCCeEEeCCcEEEEeCCCcE---EEeC---CCc--EEEeccEEeccCCC
Q 011351 118 ---------VGSG-------GERQTPEWYKEKGIEMIYQDPVTSIDIEKQT---LITN---SGK--LLKYGSLIVATGCT 173 (488)
Q Consensus 118 ---------~~~~-------~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~---v~~~---~g~--~i~yd~lVlAtG~~ 173 (488)
.+.. ....+.+.+.+.|++++.+++|++++.++.. |++. +|+ ++.+|.||.|+|..
T Consensus 82 ~~~~~~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~ 161 (453)
T 3atr_A 82 PDMQTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYS 161 (453)
T ss_dssp TTSSCEEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGG
T ss_pred CCCceEEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCc
Confidence 0000 0001122334579999999999999876544 3443 665 78999999999976
Q ss_pred CC
Q 011351 174 AS 175 (488)
Q Consensus 174 ~~ 175 (488)
..
T Consensus 162 s~ 163 (453)
T 3atr_A 162 RS 163 (453)
T ss_dssp CT
T ss_pred hh
Confidence 54
No 155
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=98.49 E-value=1.3e-06 Score=85.27 Aligned_cols=99 Identities=15% Similarity=0.196 Sum_probs=80.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc------------------ccCHHHHHHHHHHHHHcCcEEEc
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------LFTPSLAQRYEQLYQQNGVKFVK 268 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~------------------~~~~~~~~~~~~~l~~~GV~v~~ 268 (488)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+-.. ....++.+.+.+.+++.|+++++
T Consensus 14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 93 (360)
T 3ab1_A 14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVL 93 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEEC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEEc
Confidence 457999999999999999999999999999987643110 01256677778888888999999
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351 269 GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 306 (488)
Q Consensus 269 ~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~ 306 (488)
+++|+.++..+++. ..|.+.+|+++.+|.+|+|+|..
T Consensus 94 ~~~v~~i~~~~~~~-~~v~~~~g~~~~~~~li~AtG~~ 130 (360)
T 3ab1_A 94 NETVTKYTKLDDGT-FETRTNTGNVYRSRAVLIAAGLG 130 (360)
T ss_dssp SCCEEEEEECTTSC-EEEEETTSCEEEEEEEEECCTTC
T ss_pred CCEEEEEEECCCce-EEEEECCCcEEEeeEEEEccCCC
Confidence 99999998654433 35778888889999999999994
No 156
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=98.48 E-value=6.5e-07 Score=86.30 Aligned_cols=101 Identities=15% Similarity=0.220 Sum_probs=79.1
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC----cC------------ccc----ccCHHHHHHHHHHHHHcCcE
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN----HL------------LQR----LFTPSLAQRYEQLYQQNGVK 265 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~----~~------------l~~----~~~~~~~~~~~~~l~~~GV~ 265 (488)
..++|+|||+|+.|+.+|..|++.|.+|+++++.+ .+ ++. ...+++...+.+.+++.|++
T Consensus 21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 100 (338)
T 3itj_A 21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTE 100 (338)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCE
Confidence 34689999999999999999999999999999843 11 001 11347778888999999999
Q ss_pred EEcCCeEEEEEeCCCCcEEEEEe---CCCcEEEcCEEEEeecCccCC
Q 011351 266 FVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTIVIGIGAKPTV 309 (488)
Q Consensus 266 v~~~~~v~~i~~~~~~~v~~v~l---~~g~~i~~D~vi~a~G~~p~~ 309 (488)
++.++ +..++.. ++.+ .+.+ .++.++.+|.+|+|+|.+|..
T Consensus 101 i~~~~-v~~i~~~-~~~~-~v~~~~~~~~~~~~~d~vvlAtG~~~~~ 144 (338)
T 3itj_A 101 IITET-VSKVDLS-SKPF-KLWTEFNEDAEPVTTDAIILATGASAKR 144 (338)
T ss_dssp EECSC-EEEEECS-SSSE-EEEETTCSSSCCEEEEEEEECCCEEECC
T ss_pred EEEeE-EEEEEEc-CCEE-EEEEEecCCCcEEEeCEEEECcCCCcCC
Confidence 99998 9999854 3333 4555 467789999999999998764
No 157
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=98.48 E-value=2.1e-06 Score=88.51 Aligned_cols=102 Identities=16% Similarity=0.195 Sum_probs=81.9
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc--------------------c----------------cCHHH
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------------------L----------------FTPSL 251 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~--------------------~----------------~~~~~ 251 (488)
.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+... . -.+++
T Consensus 22 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~ei 101 (549)
T 4ap3_A 22 YDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEI 101 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHHH
T ss_pred CCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHHH
Confidence 57999999999999999999999999999986532100 0 12466
Q ss_pred HHHHHHHHHHcCc--EEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeec--CccCC
Q 011351 252 AQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG--AKPTV 309 (488)
Q Consensus 252 ~~~~~~~l~~~GV--~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G--~~p~~ 309 (488)
.+++.+.+++.|+ +++++++|++++.+++.....|.+.+|+++.+|.||+|+| .+|..
T Consensus 102 ~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~ 163 (549)
T 4ap3_A 102 LAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANT 163 (549)
T ss_dssp HHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCC
T ss_pred HHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCC
Confidence 7788888888898 8999999999986655445578889999999999999999 45543
No 158
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=98.47 E-value=1.1e-06 Score=84.69 Aligned_cols=97 Identities=18% Similarity=0.220 Sum_probs=78.0
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc------------------cccCHHHHHHHHHHHHHcCcEEEcC
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------RLFTPSLAQRYEQLYQQNGVKFVKG 269 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~------------------~~~~~~~~~~~~~~l~~~GV~v~~~ 269 (488)
.+++|||+|+.|+.+|..|++.|.+|+++++.+.+.. .....++.+.+.+.+++.+++++++
T Consensus 6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 85 (335)
T 2zbw_A 6 TDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYSLG 85 (335)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEEES
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEEeC
Confidence 5799999999999999999999999999998764311 0012456677777788889999999
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351 270 ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 306 (488)
Q Consensus 270 ~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~ 306 (488)
++|+.++..++ . ..+.+.+|+++.+|.||+|+|..
T Consensus 86 ~~v~~i~~~~~-~-~~v~~~~g~~~~~~~lv~AtG~~ 120 (335)
T 2zbw_A 86 ERAETLEREGD-L-FKVTTSQGNAYTAKAVIIAAGVG 120 (335)
T ss_dssp CCEEEEEEETT-E-EEEEETTSCEEEEEEEEECCTTS
T ss_pred CEEEEEEECCC-E-EEEEECCCCEEEeCEEEECCCCC
Confidence 99999986533 2 35777888889999999999994
No 159
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=98.46 E-value=2.1e-07 Score=92.08 Aligned_cols=120 Identities=15% Similarity=0.200 Sum_probs=72.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC---CCCCCC-CCcc-------------c-----------cC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA---PYERPA-LTKG-------------Y-----------LF 102 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~---~~~~~~-l~~~-------------~-----------~~ 102 (488)
++||+|||||++|+++|..|++.|+ +|+|+|+.+.. .-.+.. +... + +.
T Consensus 2 ~~dV~IvGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~ 78 (394)
T 1k0i_A 2 KTQVAIIGAGPSGLLLGQLLHKAGI---DNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIA 78 (394)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTC---CEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEE
T ss_pred CccEEEECCCHHHHHHHHHHHHCCC---CEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEE
Confidence 4799999999999999999999988 89999997631 000000 0000 0 00
Q ss_pred CCCCCCCCCCCccccc-CCC--------CCCCCHhHHHHCCCeEEeCCcEEEEeCCC---cEEEe-CCCc--EEEeccEE
Q 011351 103 PLDKKPARLPGFHTCV-GSG--------GERQTPEWYKEKGIEMIYQDPVTSIDIEK---QTLIT-NSGK--LLKYGSLI 167 (488)
Q Consensus 103 ~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~i~~~~~~~v~~id~~~---~~v~~-~~g~--~i~yd~lV 167 (488)
.... ...+ .+.... +.. ....+.+.+.+.+++++.+++|+++..+. ..|++ .+|+ ++.+|.||
T Consensus 79 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV 156 (394)
T 1k0i_A 79 FAGQ-RRRI-DLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIA 156 (394)
T ss_dssp ETTE-EEEE-CHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEE
T ss_pred ECCc-eEEe-ccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEE
Confidence 0000 0000 000000 000 00011223345699999999999997642 46776 6887 79999999
Q ss_pred eccCCCCC
Q 011351 168 VATGCTAS 175 (488)
Q Consensus 168 lAtG~~~~ 175 (488)
.|+|....
T Consensus 157 ~AdG~~S~ 164 (394)
T 1k0i_A 157 GCDGFHGI 164 (394)
T ss_dssp ECCCTTCS
T ss_pred ECCCCCcH
Confidence 99998654
No 160
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=98.45 E-value=2.3e-07 Score=93.12 Aligned_cols=100 Identities=22% Similarity=0.322 Sum_probs=77.4
Q ss_pred CeEEEECCCHHHHHHHHHHHh---CCCcEEEEecCCcCcccc----------cCHHHHHHHHHHHHHcCcEEEcCCeEEE
Q 011351 208 KKVVVVGGGYIGMEVAAAAVG---WKLDTTIIFPENHLLQRL----------FTPSLAQRYEQLYQQNGVKFVKGASIKN 274 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~---~g~~v~lv~~~~~~l~~~----------~~~~~~~~~~~~l~~~GV~v~~~~~v~~ 274 (488)
++|+|||+|+.|+.+|..|++ .+.+|+++++.+.+.... ...++...+.+.+++.||+++. .+++.
T Consensus 5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~ 83 (437)
T 3sx6_A 5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIA-QSAEQ 83 (437)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEEC-SCEEE
T ss_pred CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEE-eEEEE
Confidence 689999999999999999999 789999999987642211 1112333356677889999985 58999
Q ss_pred EEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhh
Q 011351 275 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF 312 (488)
Q Consensus 275 i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~ 312 (488)
++.. +. .|.+++|+++.+|.+|+|+|.+|+...+
T Consensus 84 id~~-~~---~V~~~~g~~i~~d~lviAtG~~~~~~~i 117 (437)
T 3sx6_A 84 IDAE-AQ---NITLADGNTVHYDYLMIATGPKLAFENV 117 (437)
T ss_dssp EETT-TT---EEEETTSCEEECSEEEECCCCEECGGGS
T ss_pred EEcC-CC---EEEECCCCEEECCEEEECCCCCcCcccC
Confidence 9853 22 5778899899999999999999875433
No 161
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=98.45 E-value=1.4e-06 Score=85.54 Aligned_cols=97 Identities=22% Similarity=0.254 Sum_probs=79.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc-----------------------------------------
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------------- 245 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~----------------------------------------- 245 (488)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~ 90 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS 90 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence 468999999999999999999999999999987654210
Q ss_pred --ccC-----------HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 246 --LFT-----------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 246 --~~~-----------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
.++ ..+.+.+.+.+++.|+++++++++++++. ++ .|.+.+|+++.+|.||.|+|..+.
T Consensus 91 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~---~v~~~~g~~~~ad~vV~AdG~~s~ 161 (379)
T 3alj_A 91 VSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP--VG---RLTLQTGEVLEADLIVGADGVGSK 161 (379)
T ss_dssp EEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--TT---EEEETTSCEEECSEEEECCCTTCH
T ss_pred eeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC---EEEECCCCEEEcCEEEECCCccHH
Confidence 000 34566777888888999999999999985 33 477888989999999999999864
No 162
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=98.44 E-value=2e-06 Score=88.45 Aligned_cols=101 Identities=17% Similarity=0.179 Sum_probs=81.3
Q ss_pred CeEEEECCCHHHHHHHHHHH-hCCCcEEEEecCCcCccc--------------------c----------------cCHH
Q 011351 208 KKVVVVGGGYIGMEVAAAAV-GWKLDTTIIFPENHLLQR--------------------L----------------FTPS 250 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~-~~g~~v~lv~~~~~~l~~--------------------~----------------~~~~ 250 (488)
.+|+|||+|+.|+.+|..|+ +.|.+|+++++.+.+... . ..++
T Consensus 9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~e 88 (540)
T 3gwf_A 9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPE 88 (540)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHH
Confidence 47999999999999999999 999999999986533100 0 0235
Q ss_pred HHHHHHHHHHHcCc--EEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC--ccC
Q 011351 251 LAQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA--KPT 308 (488)
Q Consensus 251 ~~~~~~~~l~~~GV--~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~--~p~ 308 (488)
+.+++.+..++.|+ .++++++|++++.++++....|.+.+|+++.+|.||+|+|. +|.
T Consensus 89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~ 150 (540)
T 3gwf_A 89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAIN 150 (540)
T ss_dssp HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBC
T ss_pred HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCC
Confidence 67778888888898 89999999999876554455788899999999999999994 554
No 163
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=98.44 E-value=1.4e-06 Score=83.38 Aligned_cols=100 Identities=19% Similarity=0.281 Sum_probs=79.0
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecC--CcCc--------cc---ccCHHHHHHHHHHHHHcCcEEEcCCeEEE
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHLL--------QR---LFTPSLAQRYEQLYQQNGVKFVKGASIKN 274 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~--~~~l--------~~---~~~~~~~~~~~~~l~~~GV~v~~~~~v~~ 274 (488)
.+|+|||+|+.|+.+|..|++.|.+|+++++. ..+. +. ....++.+.+.+.+++.|++++. .++++
T Consensus 16 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~ 94 (323)
T 3f8d_A 16 FDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIVEK 94 (323)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCEEE
T ss_pred cCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEE
Confidence 57999999999999999999999999999985 1111 11 11246777788888889999999 88999
Q ss_pred EEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh
Q 011351 275 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 310 (488)
Q Consensus 275 i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~ 310 (488)
++..+ +. ..+.+.+|+++.+|.+|+|+|..|...
T Consensus 95 i~~~~-~~-~~v~~~~g~~~~~d~lvlAtG~~~~~~ 128 (323)
T 3f8d_A 95 IENRG-DE-FVVKTKRKGEFKADSVILGIGVKRRKL 128 (323)
T ss_dssp EEEC---C-EEEEESSSCEEEEEEEEECCCCEECCC
T ss_pred EEecC-CE-EEEEECCCCEEEcCEEEECcCCCCccC
Confidence 98643 22 357788888999999999999987643
No 164
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=98.43 E-value=3.7e-07 Score=89.46 Aligned_cols=35 Identities=14% Similarity=0.316 Sum_probs=32.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
++||+|||||++|+++|++|++.|. +|+|||++..
T Consensus 2 ~~dvvIIG~Gi~Gl~~A~~La~~G~---~V~vle~~~~ 36 (372)
T 2uzz_A 2 KYDLIIIGSGSVGAAAGYYATRAGL---NVLMTDAHMP 36 (372)
T ss_dssp CEEEEESCTTHHHHHHHHHHHHTTC---CEEEECSSCS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCC
Confidence 4799999999999999999999987 8999999764
No 165
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=98.43 E-value=1.7e-06 Score=85.64 Aligned_cols=99 Identities=11% Similarity=0.204 Sum_probs=77.8
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc--------------------cc---------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------------------RL--------------------- 246 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~--------------------~~--------------------- 246 (488)
..|+|||+|+.|+.+|..+++.|.+|+++++.+.+.. ..
T Consensus 5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (401)
T 2gqf_A 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI 84 (401)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHHH
Confidence 4699999999999999999999999999998764310 00
Q ss_pred ----------------------cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCC---CCcEEEEEeCCCcEEEcCEEEE
Q 011351 247 ----------------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS---DGRVAAVKLEDGSTIDADTIVI 301 (488)
Q Consensus 247 ----------------------~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~---~~~v~~v~l~~g~~i~~D~vi~ 301 (488)
....+.+.+.+.+++.||++++++.++++..++ ++.+ .|.+.+| ++.+|.||+
T Consensus 85 ~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~-~v~~~~g-~i~ad~VVl 162 (401)
T 2gqf_A 85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRF-VLQVNST-QWQCKNLIV 162 (401)
T ss_dssp HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCE-EEEETTE-EEEESEEEE
T ss_pred HHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeE-EEEECCC-EEECCEEEE
Confidence 123455667788888999999999999998541 2333 5777776 799999999
Q ss_pred eecCccC
Q 011351 302 GIGAKPT 308 (488)
Q Consensus 302 a~G~~p~ 308 (488)
|+|..+.
T Consensus 163 AtG~~s~ 169 (401)
T 2gqf_A 163 ATGGLSM 169 (401)
T ss_dssp CCCCSSC
T ss_pred CCCCccC
Confidence 9999884
No 166
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=98.42 E-value=1.3e-06 Score=83.17 Aligned_cols=101 Identities=20% Similarity=0.268 Sum_probs=78.3
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCC--cCc---------c--cccCHHHHHHHHHHHHHcCcEEEcCCeEEEE
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN--HLL---------Q--RLFTPSLAQRYEQLYQQNGVKFVKGASIKNL 275 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~--~~l---------~--~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i 275 (488)
+++|||+|+.|+.+|..|++.|.+|+++++.. .+. . ....+.+.+.+.+.+++.|++++.+++++.+
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i 82 (310)
T 1fl2_A 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL 82 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEE
Confidence 58999999999999999999999999997531 111 0 0112467778888888899999999999999
Q ss_pred EeCCC-CcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351 276 EAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPTV 309 (488)
Q Consensus 276 ~~~~~-~~v~~v~l~~g~~i~~D~vi~a~G~~p~~ 309 (488)
+...+ +....+.+++|+++.+|.+|+|+|..|..
T Consensus 83 ~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~ 117 (310)
T 1fl2_A 83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKWRN 117 (310)
T ss_dssp ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred EecccCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence 75322 22246778888889999999999998754
No 167
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=98.39 E-value=4.3e-07 Score=90.14 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=32.2
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 89 (488)
.+|+|||||++|+++|..|+++|+ +|+|+|+.+..
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~---~v~v~Er~~~~ 36 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGI---KVTIYERNSAA 36 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC---CEEEEecCCCC
Confidence 589999999999999999999998 89999997654
No 168
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=98.39 E-value=4.6e-07 Score=90.75 Aligned_cols=96 Identities=24% Similarity=0.350 Sum_probs=72.3
Q ss_pred CeEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCcCcccccCHH----------HHHHHHHHHHHcCcEEEcCCeEEEE
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRLFTPS----------LAQRYEQLYQQNGVKFVKGASIKNL 275 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g--~~v~lv~~~~~~l~~~~~~~----------~~~~~~~~l~~~GV~v~~~~~v~~i 275 (488)
|+|+|||+|+.|+.+|..|++++ .+||+|++.+.+.....-+. +...+.+.+++.||+++.+ ++++|
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~v~~I 81 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAESI 81 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEEEE
T ss_pred CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEe-EEEEE
Confidence 68999999999999999999865 68999999876432111111 1112335567789999877 69999
Q ss_pred EeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 276 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 276 ~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
+.+ .. .|.+++|+++++|.+|+|||.++.
T Consensus 82 d~~-~~---~V~~~~g~~i~YD~LViAtG~~~~ 110 (430)
T 3hyw_A 82 DPD-AN---TVTTQSGKKIEYDYLVIATGPKLV 110 (430)
T ss_dssp ETT-TT---EEEETTCCEEECSEEEECCCCEEE
T ss_pred ECC-CC---EEEECCCCEEECCEEEEeCCCCcc
Confidence 853 22 578899999999999999998753
No 169
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=98.39 E-value=5.5e-07 Score=89.51 Aligned_cols=96 Identities=20% Similarity=0.332 Sum_probs=74.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
.++|+|||||+.|+.+|..|++.|. +|+++++.+...- . .+ ...+ .....+.+
T Consensus 145 ~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l~------~-~~------~~~~-----------~~~l~~~l 197 (408)
T 2gqw_A 145 QSRLLIVGGGVIGLELAATARTAGV---HVSLVETQPRLMS------R-AA------PATL-----------ADFVARYH 197 (408)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSST------T-TS------CHHH-----------HHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC---EEEEEEeCCcccc------c-cc------CHHH-----------HHHHHHHH
Confidence 5799999999999999999999986 8999998764210 0 00 0000 01235667
Q ss_pred HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCC
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
++.|++++.++.|.+++ ++ .|++.+|+++.+|.+|+|+|..|.
T Consensus 198 ~~~GV~i~~~~~v~~i~-~~-~v~~~~g~~i~~D~vi~a~G~~p~ 240 (408)
T 2gqw_A 198 AAQGVDLRFERSVTGSV-DG-VVLLDDGTRIAADMVVVGIGVLAN 240 (408)
T ss_dssp HHTTCEEEESCCEEEEE-TT-EEEETTSCEEECSEEEECSCEEEC
T ss_pred HHcCcEEEeCCEEEEEE-CC-EEEECCCCEEEcCEEEECcCCCcc
Confidence 88999999999999998 44 888899999999999999998764
No 170
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=98.38 E-value=1.6e-06 Score=89.87 Aligned_cols=141 Identities=15% Similarity=0.171 Sum_probs=92.8
Q ss_pred eccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhh----cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc
Q 011351 168 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE----KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 243 (488)
Q Consensus 168 lAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~----~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l 243 (488)
.++.+........|....++....+...+...+...+. ..-.|+|||+|..|+.+|..|++.|.+|+++++.+.+.
T Consensus 78 ~c~~ch~~~~~~~p~~~~~~~~~w~~~~~~~~i~~~i~~~~~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~g 157 (566)
T 1qo8_A 78 YCNECHSFDIKPMPFSDAKKKKSWDDGWDQDKIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSG 157 (566)
T ss_dssp GGGGTCCCCCCCCTTTTSCCCCCSCCCCCHHHHHHHHHTCCSEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSC
T ss_pred hhhhhcCCCcCCCCCCCCCCCcccccccccHHHHHhhccCCCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence 45565554322334444444443333223333322222 22369999999999999999999999999999875321
Q ss_pred cc------------------------------------------------------------------------------
Q 011351 244 QR------------------------------------------------------------------------------ 245 (488)
Q Consensus 244 ~~------------------------------------------------------------------------------ 245 (488)
..
T Consensus 158 g~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~ 237 (566)
T 1qo8_A 158 GNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVD 237 (566)
T ss_dssp TTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSC
T ss_pred CcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHhccHHHHHHHHhcCCccccccccCCCCCC
Confidence 10
Q ss_pred -c--------cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC--CCc--EEEcCEEEEeecCccC
Q 011351 246 -L--------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS--TIDADTIVIGIGAKPT 308 (488)
Q Consensus 246 -~--------~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~--~g~--~i~~D~vi~a~G~~p~ 308 (488)
. ....+...+.+.+++.||++++++.++++..++++++.+|.+. +|+ ++.+|.||+|+|....
T Consensus 238 r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~ 313 (566)
T 1qo8_A 238 RTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM 313 (566)
T ss_dssp CEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred ceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence 0 0122445566777888999999999999986543777777665 675 6899999999997553
No 171
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=98.38 E-value=3.3e-07 Score=94.70 Aligned_cols=161 Identities=13% Similarity=0.147 Sum_probs=90.0
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC-CCCCCCCCCccc------------cCCC-----------
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY-APYERPALTKGY------------LFPL----------- 104 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~-~~~~~~~l~~~~------------~~~~----------- 104 (488)
..++||+|||||+||++||..|++.|. +|+|||+.+. .....+..+.+. +...
T Consensus 19 ~~~yDVIVIGgG~AGl~AAlaLAr~G~---kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~ 95 (641)
T 3cp8_A 19 SHMYDVIVVGAGHAGCEAALAVARGGL---HCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQ 95 (641)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEE
T ss_pred cCcCCEEEECccHHHHHHHHHHHHCCC---cEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCc
Confidence 456899999999999999999999987 8999998742 111101000000 0000
Q ss_pred -CCCC-CCCCCccc---ccC-CCCCCCCHhHHHH-CCCeEEeCCcEEEEeCCCcE---EEeCCCcEEEeccEEeccCCCC
Q 011351 105 -DKKP-ARLPGFHT---CVG-SGGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTA 174 (488)
Q Consensus 105 -~~~~-~~~~~~~~---~~~-~~~~~~~~~~~~~-~~i~~~~~~~v~~id~~~~~---v~~~~g~~i~yd~lVlAtG~~~ 174 (488)
.... ..-+.... ... ..+.....+.+++ .+++++. .+|+.+..++.. |.+.+|..+.+|.||+|||..+
T Consensus 96 f~~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~-~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s 174 (641)
T 3cp8_A 96 FRMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQ-DTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFL 174 (641)
T ss_dssp EEEECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCB
T ss_pred hhhcccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEe-eEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCC
Confidence 0000 00000000 000 0000111233444 4899865 589988765543 6677888899999999999875
Q ss_pred CcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEE
Q 011351 175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 236 (488)
Q Consensus 175 ~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv 236 (488)
.... .+ +...+. +.+++ |+..+++++..|.+.|.++..+
T Consensus 175 ~~~i-~~-----G~~~~~--------------~g~~v---G~~~a~~la~~L~~~G~kv~~l 213 (641)
T 3cp8_A 175 NGLI-HI-----GMDHFP--------------GGRST---AEPPVEGLTESLASLGFSFGRL 213 (641)
T ss_dssp TCEE-EE-----TTEEEE--------------CSSST---TSCCBCSHHHHHHHTTCCEEEE
T ss_pred Cccc-ee-----eeeeec--------------ccccc---CCchhhhhHHHHHhCCceEEee
Confidence 4211 11 111110 11111 3567788888888888887644
No 172
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=98.37 E-value=1.9e-06 Score=81.24 Aligned_cols=99 Identities=12% Similarity=0.257 Sum_probs=76.3
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc---------cc---ccCHHHHHHHHHHHHHc-CcEEEcCCeEEE
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------QR---LFTPSLAQRYEQLYQQN-GVKFVKGASIKN 274 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l---------~~---~~~~~~~~~~~~~l~~~-GV~v~~~~~v~~ 274 (488)
.+++|||+|+.|+.+|..|++.|.+|+++++.+... +. ....++...+.+.+++. +++++.+ +++.
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~ 81 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEG-RVTD 81 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEES-CEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEe-EEEE
Confidence 479999999999999999999999999999753211 00 11235667777777776 7888765 8999
Q ss_pred EEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351 275 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 309 (488)
Q Consensus 275 i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~ 309 (488)
++..+++ ..+.+.+|+++.+|.+|+|+|..|..
T Consensus 82 i~~~~~~--~~v~~~~g~~~~~d~vviAtG~~~~~ 114 (297)
T 3fbs_A 82 AKGSFGE--FIVEIDGGRRETAGRLILAMGVTDEL 114 (297)
T ss_dssp EEEETTE--EEEEETTSCEEEEEEEEECCCCEEEC
T ss_pred EEEcCCe--EEEEECCCCEEEcCEEEECCCCCCCC
Confidence 9865332 36788899899999999999998754
No 173
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=98.36 E-value=2.5e-06 Score=81.24 Aligned_cols=98 Identities=16% Similarity=0.320 Sum_probs=76.4
Q ss_pred eEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCc---C--------ccc---cc-CHHHHHHHHHHHHHcCcEEEcCCeE
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH---L--------LQR---LF-TPSLAQRYEQLYQQNGVKFVKGASI 272 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~-~v~lv~~~~~---~--------l~~---~~-~~~~~~~~~~~l~~~GV~v~~~~~v 272 (488)
+++|||+|+.|+.+|..|++.|. +|+++++... + .+. .. ...+.+.+.+.+++.|++++. .++
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v 81 (311)
T 2q0l_A 3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM-TAV 81 (311)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC-SCE
T ss_pred eEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE-EEE
Confidence 68999999999999999999999 9999997521 0 111 11 245677778888889999998 688
Q ss_pred EEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351 273 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 309 (488)
Q Consensus 273 ~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~ 309 (488)
+.++..+ +. ..+.+.+|+++.+|.+|+|+|..|..
T Consensus 82 ~~i~~~~-~~-~~v~~~~g~~~~~~~vv~AtG~~~~~ 116 (311)
T 2q0l_A 82 QRVSKKD-SH-FVILAEDGKTFEAKSVIIATGGSPKR 116 (311)
T ss_dssp EEEEEET-TE-EEEEETTSCEEEEEEEEECCCEEECC
T ss_pred EEEEEcC-CE-EEEEEcCCCEEECCEEEECCCCCCCC
Confidence 8887543 32 24667888899999999999988764
No 174
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=98.35 E-value=7.3e-07 Score=87.88 Aligned_cols=98 Identities=13% Similarity=0.174 Sum_probs=74.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
.++++|||||+.|+.+|..|++.|. +|+++++.+...-. .+ +..+ .....+.+
T Consensus 145 ~~~v~ViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~~~~-------~~------~~~~-----------~~~l~~~l 197 (384)
T 2v3a_A 145 KRRVLLLGAGLIGCEFANDLSSGGY---QLDVVAPCEQVMPG-------LL------HPAA-----------AKAVQAGL 197 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSSTT-------TS------CHHH-----------HHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC---eEEEEecCcchhhc-------cc------CHHH-----------HHHHHHHH
Confidence 6899999999999999999999986 89999987542100 00 0000 01234566
Q ss_pred HHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
++.|++++.+++|.+++.+.. .+++.+|+++.+|.+|+|+|..|.
T Consensus 198 ~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~ 244 (384)
T 2v3a_A 198 EGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPR 244 (384)
T ss_dssp HTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEEC
T ss_pred HHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcC
Confidence 778999999999999976543 577788988999999999998765
No 175
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=98.35 E-value=2.9e-06 Score=81.40 Aligned_cols=100 Identities=22% Similarity=0.269 Sum_probs=76.7
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc---C--------ccc----ccCHHHHHHHHHHHHHcCcEEEcCCeE
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---L--------LQR----LFTPSLAQRYEQLYQQNGVKFVKGASI 272 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~---~--------l~~----~~~~~~~~~~~~~l~~~GV~v~~~~~v 272 (488)
.+++|||+|+.|+.+|..|++.|.+|+++++... + .+. ....++.+.+.+.+++.|++++. .++
T Consensus 9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v 87 (325)
T 2q7v_A 9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM-DEV 87 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE-CCE
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe-eeE
Confidence 5799999999999999999999999999998721 0 111 01235677778888899999998 578
Q ss_pred EEEEeC--CCCcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351 273 KNLEAG--SDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 309 (488)
Q Consensus 273 ~~i~~~--~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~ 309 (488)
..++.. ++. ...+.+.+|+++.+|.+|+|+|..|..
T Consensus 88 ~~i~~~~~~~~-~~~v~~~~g~~~~~~~vv~AtG~~~~~ 125 (325)
T 2q7v_A 88 QGVQHDATSHP-YPFTVRGYNGEYRAKAVILATGADPRK 125 (325)
T ss_dssp EEEEECTTSSS-CCEEEEESSCEEEEEEEEECCCEEECC
T ss_pred EEEEeccCCCc-eEEEEECCCCEEEeCEEEECcCCCcCC
Confidence 888764 222 124566788899999999999998764
No 176
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=98.34 E-value=3.4e-06 Score=85.25 Aligned_cols=103 Identities=17% Similarity=0.241 Sum_probs=76.8
Q ss_pred CeEEEECCCHHHHHHHHHHHh---CCCc---EEEEecCCcCcccc-----------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVG---WKLD---TTIIFPENHLLQRL----------------------------------- 246 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~---~g~~---v~lv~~~~~~l~~~----------------------------------- 246 (488)
++|+|||+|+.|+.+|..|++ .|.+ |+++++.+.+-...
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~ 82 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA 82 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence 579999999999999999999 9999 99999875421000
Q ss_pred -c---------------CHHHHHHHHHHHHHcCcE--EEcCCeEEEEEeCCCCcEEEEEeCC---C--cEEEcCEEEEee
Q 011351 247 -F---------------TPSLAQRYEQLYQQNGVK--FVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGI 303 (488)
Q Consensus 247 -~---------------~~~~~~~~~~~l~~~GV~--v~~~~~v~~i~~~~~~~v~~v~l~~---g--~~i~~D~vi~a~ 303 (488)
+ ...+.+++.+.+++.|++ ++++++|+.++..+++....|.+.+ | +++.+|.||+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt 162 (464)
T 2xve_A 83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT 162 (464)
T ss_dssp TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence 0 134566777777888998 9999999999865432122455543 4 568999999999
Q ss_pred c--CccCCh
Q 011351 304 G--AKPTVS 310 (488)
Q Consensus 304 G--~~p~~~ 310 (488)
| ..|...
T Consensus 163 G~~s~p~~p 171 (464)
T 2xve_A 163 GHFSTPYVP 171 (464)
T ss_dssp CSSSSBCCC
T ss_pred CCCCCCccC
Confidence 9 677643
No 177
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=98.34 E-value=5.6e-07 Score=90.99 Aligned_cols=99 Identities=21% Similarity=0.277 Sum_probs=75.8
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++++|||||+.|+.+|..|++.|. +|+++++.+... +.+.. .+ .....+.
T Consensus 165 ~~~~vvVvGgG~~g~e~A~~l~~~G~---~Vtlv~~~~~~l---~~~~~-----------~~-----------~~~l~~~ 216 (463)
T 2r9z_A 165 QPKRVAIIGAGYIGIELAGLLRSFGS---EVTVVALEDRLL---FQFDP-----------LL-----------SATLAEN 216 (463)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred cCCEEEEECCCHHHHHHHHHHHhcCC---EEEEEEcCCccc---cccCH-----------HH-----------HHHHHHH
Confidence 35799999999999999999999986 899999875421 00000 00 0123566
Q ss_pred HHHCCCeEEeCCcEEEEeCCC--cEEEeCCCc-EEEeccEEeccCCCCCc
Q 011351 130 YKEKGIEMIYQDPVTSIDIEK--QTLITNSGK-LLKYGSLIVATGCTASR 176 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~-~i~yd~lVlAtG~~~~~ 176 (488)
+++.+++++.++.|.+++.+. ..+++.+|+ ++.+|.+|+|+|..|..
T Consensus 217 l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~ 266 (463)
T 2r9z_A 217 MHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNT 266 (463)
T ss_dssp HHHTTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESC
T ss_pred HHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCC
Confidence 788999999999999998643 467788898 89999999999987753
No 178
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=98.34 E-value=4.1e-06 Score=84.19 Aligned_cols=99 Identities=25% Similarity=0.437 Sum_probs=79.5
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc------------------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------ 245 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~------------------------------------------ 245 (488)
..|+|||+|..|+-+|..|++.|.+|+++++.+.+...
T Consensus 27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (447)
T 2i0z_A 27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNED 106 (447)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHH
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHHH
Confidence 46999999999999999999999999999987532100
Q ss_pred -------------------cc-----CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 011351 246 -------------------LF-----TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 301 (488)
Q Consensus 246 -------------------~~-----~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~ 301 (488)
.+ ...+.+.+.+.+++.||+++++++|+++..+ ++.+..|.+.+|+++.+|.||+
T Consensus 107 ~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~-~~~v~~V~~~~G~~i~Ad~VVl 185 (447)
T 2i0z_A 107 IITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYE-NGQTKAVILQTGEVLETNHVVI 185 (447)
T ss_dssp HHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTCCEEECSCEEE
T ss_pred HHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEec-CCcEEEEEECCCCEEECCEEEE
Confidence 00 0234456667778899999999999999864 5666678889998899999999
Q ss_pred eecCcc
Q 011351 302 GIGAKP 307 (488)
Q Consensus 302 a~G~~p 307 (488)
|+|..+
T Consensus 186 AtGg~s 191 (447)
T 2i0z_A 186 AVGGKS 191 (447)
T ss_dssp CCCCSS
T ss_pred CCCCCc
Confidence 999876
No 179
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=98.33 E-value=5.8e-07 Score=90.54 Aligned_cols=98 Identities=14% Similarity=0.120 Sum_probs=75.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++++|||||+.|+.+|..|++.|. +|+|+++.+... +.+.. .+ .....+.
T Consensus 166 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~~-----------~~-----------~~~l~~~ 217 (450)
T 1ges_A 166 LPERVAVVGAGYIGVELGGVINGLGA---KTHLFEMFDAPL---PSFDP-----------MI-----------SETLVEV 217 (450)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCC---EEEEEEeCCchh---hhhhH-----------HH-----------HHHHHHH
Confidence 35799999999999999999999986 899999875421 00000 00 1123566
Q ss_pred HHHCCCeEEeCCcEEEEeCCC---cEEEeCCCcEEEeccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
+++.|++++.+++|.+++.+. ..+++.+|+++.+|.+|+|+|..|.
T Consensus 218 l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~ 266 (450)
T 1ges_A 218 MNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPA 266 (450)
T ss_dssp HHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEES
T ss_pred HHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcC
Confidence 778899999999999998653 3678888988999999999998765
No 180
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=98.33 E-value=5.3e-06 Score=81.60 Aligned_cols=98 Identities=20% Similarity=0.296 Sum_probs=72.0
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc-------------------------------------------
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------- 245 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~------------------------------------------- 245 (488)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+-..
T Consensus 6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRPII 85 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSCEE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceEee
Confidence 4899999999999999999999999999986432100
Q ss_pred ------------ccC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe-CCC--cEEEcCEEEEeecCcc
Q 011351 246 ------------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDG--STIDADTIVIGIGAKP 307 (488)
Q Consensus 246 ------------~~~-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l-~~g--~~i~~D~vi~a~G~~p 307 (488)
.++ ..+...+.+..++.|++++.+++++.+..+ ++.+..+.. .++ .++.+|+||-|.|...
T Consensus 86 ~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~-~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S 162 (397)
T 3oz2_A 86 LQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKE-NGKVAGAKIRHNNEIVDVRAKMVIAADGFES 162 (397)
T ss_dssp EECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEE-TTEEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred ccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeec-cceeeeeeecccccceEEEEeEEEeCCcccc
Confidence 000 234556667778889999999999998764 455444433 233 3689999999999643
No 181
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=98.33 E-value=1.6e-06 Score=89.20 Aligned_cols=101 Identities=13% Similarity=0.139 Sum_probs=80.0
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc----------------------------------cc--cCHHH
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------RL--FTPSL 251 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~----------------------------------~~--~~~~~ 251 (488)
.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+-. .. -.+++
T Consensus 10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei 89 (545)
T 3uox_A 10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEM 89 (545)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHHH
Confidence 4799999999999999999999999999998754310 00 12467
Q ss_pred HHHHHHHHHHcCc--EEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeec--CccC
Q 011351 252 AQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG--AKPT 308 (488)
Q Consensus 252 ~~~~~~~l~~~GV--~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G--~~p~ 308 (488)
..++.+..++.|+ .++++++|++++.+++.....|.+.+|+++.||.||+|+| .+|.
T Consensus 90 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~ 150 (545)
T 3uox_A 90 LRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASR 150 (545)
T ss_dssp HHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC--
T ss_pred HHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCc
Confidence 7788888888888 7899999999986544444578889999999999999999 5554
No 182
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=98.33 E-value=7.2e-07 Score=88.42 Aligned_cols=100 Identities=22% Similarity=0.283 Sum_probs=73.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCcCcccccCHHHH---------HHHHHHHHHcCcEEEcCCeEEEE
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRLFTPSLA---------QRYEQLYQQNGVKFVKGASIKNL 275 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g--~~v~lv~~~~~~l~~~~~~~~~---------~~~~~~l~~~GV~v~~~~~v~~i 275 (488)
+|+|+|||+|+.|+.+|..|++.+ .+|++|++.+......+...+. ..-.+.+.+.||+++.+ +++.|
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~-~v~~i 80 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHD-SALGI 80 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECS-CEEEE
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEe-EEEEE
Confidence 789999999999999999998765 5899999887533221111110 01123456789999876 68899
Q ss_pred EeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh
Q 011351 276 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP 311 (488)
Q Consensus 276 ~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~ 311 (488)
+.+ .+ .+.+.+|+++.+|.+|+|+|.+++...
T Consensus 81 d~~--~~--~v~~~~g~~i~yd~LviAtG~~~~~~~ 112 (401)
T 3vrd_B 81 DPD--KK--LVKTAGGAEFAYDRCVVAPGIDLLYDK 112 (401)
T ss_dssp ETT--TT--EEEETTSCEEECSEEEECCCEEECGGG
T ss_pred Ecc--Cc--EEEecccceeecceeeeccCCccccCC
Confidence 853 22 478899999999999999999887543
No 183
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=98.32 E-value=1.7e-06 Score=85.63 Aligned_cols=35 Identities=26% Similarity=0.522 Sum_probs=32.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
++||+|||||++|+++|+.|+++|. +|+|||+.+.
T Consensus 4 ~~DVvIIGaG~~Gl~~A~~La~~G~---~V~vlE~~~~ 38 (397)
T 2oln_A 4 SYDVVVVGGGPVGLATAWQVAERGH---RVLVLERHTF 38 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCT
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCCC
Confidence 4799999999999999999999987 8999999764
No 184
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=98.32 E-value=4.1e-07 Score=84.70 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=33.3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 89 (488)
|+.||+|||||||||+||..|+++|+ +|+|+|+.+..
T Consensus 1 Mt~dV~IIGaGpaGL~aA~~La~~G~---~V~v~Ek~~~~ 37 (336)
T 3kkj_A 1 MTVPIAIIGTGIAGLSAAQALTAAGH---QVHLFDKSRGS 37 (336)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCCCC
Confidence 35799999999999999999999998 89999998754
No 185
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=98.32 E-value=4.7e-07 Score=90.07 Aligned_cols=98 Identities=21% Similarity=0.337 Sum_probs=74.4
Q ss_pred CeEEEECCCHHHHHHHHHHHh---CCCcEEEEecCCcCcccc----------cCHHHHHHHHHHHHHcCcEEEcCCeEEE
Q 011351 208 KKVVVVGGGYIGMEVAAAAVG---WKLDTTIIFPENHLLQRL----------FTPSLAQRYEQLYQQNGVKFVKGASIKN 274 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~---~g~~v~lv~~~~~~l~~~----------~~~~~~~~~~~~l~~~GV~v~~~~~v~~ 274 (488)
++|+|||+|+.|+.+|..|++ .+.+|+++++.+.+.... ...++...+.+.+++.|++++.+ +++.
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~ 80 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEK 80 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEEE
Confidence 579999999999999999999 899999999887542210 11223344666777889999988 8999
Q ss_pred EEeCCCCcEEEEEeCCCc----EEEcCEEEEeecCccCCh
Q 011351 275 LEAGSDGRVAAVKLEDGS----TIDADTIVIGIGAKPTVS 310 (488)
Q Consensus 275 i~~~~~~~v~~v~l~~g~----~i~~D~vi~a~G~~p~~~ 310 (488)
++.+ +. .|.+.+++ ++.+|.+|+|+|.+|+..
T Consensus 81 i~~~-~~---~V~~~~g~~~~~~~~~d~lViAtG~~~~~~ 116 (409)
T 3h8l_A 81 IDAK-SS---MVYYTKPDGSMAEEEYDYVIVGIGAHLATE 116 (409)
T ss_dssp EETT-TT---EEEEECTTSCEEEEECSEEEECCCCEECGG
T ss_pred EeCC-CC---EEEEccCCcccceeeCCEEEECCCCCcCcc
Confidence 9853 22 35555665 399999999999988754
No 186
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.31 E-value=4.6e-07 Score=91.52 Aligned_cols=97 Identities=22% Similarity=0.308 Sum_probs=72.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++++|||||++|+.+|..|++.|. +|+|+++.+... |.+. ..+ .....+.
T Consensus 170 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~-----------~~~-----------~~~l~~~ 221 (458)
T 1lvl_A 170 LPQHLVVVGGGYIGLELGIAYRKLGA---QVSVVEARERIL---PTYD-----------SEL-----------TAPVAES 221 (458)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHHTC---EEEEECSSSSSS---TTSC-----------HHH-----------HHHHHHH
T ss_pred cCCeEEEECcCHHHHHHHHHHHHCCC---eEEEEEcCCccc---cccC-----------HHH-----------HHHHHHH
Confidence 35799999999999999999999987 899999876521 0000 000 0123456
Q ss_pred HHHCCCeEEeCCcEEEEeCCCcEEEeC--CC--cEEEeccEEeccCCCCCc
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQTLITN--SG--KLLKYGSLIVATGCTASR 176 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~~v~~~--~g--~~i~yd~lVlAtG~~~~~ 176 (488)
+++.|++++.+++|.+++. ++ +.+. +| +++.+|.||+|+|..|..
T Consensus 222 l~~~gv~i~~~~~v~~i~~-~~-v~v~~~~G~~~~i~~D~vv~a~G~~p~~ 270 (458)
T 1lvl_A 222 LKKLGIALHLGHSVEGYEN-GC-LLANDGKGGQLRLEADRVLVAVGRRPRT 270 (458)
T ss_dssp HHHHTCEEETTCEEEEEET-TE-EEEECSSSCCCEECCSCEEECCCEEECC
T ss_pred HHHCCCEEEECCEEEEEEe-CC-EEEEECCCceEEEECCEEEECcCCCcCC
Confidence 7788999999999999987 44 4433 56 579999999999988753
No 187
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=98.31 E-value=2.5e-06 Score=82.04 Aligned_cols=98 Identities=16% Similarity=0.237 Sum_probs=75.8
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEec----CCcCc------------cc----ccCHHHHHHHHHHHHHcCcEEE
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP----ENHLL------------QR----LFTPSLAQRYEQLYQQNGVKFV 267 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~----~~~~l------------~~----~~~~~~~~~~~~~l~~~GV~v~ 267 (488)
.+++|||+|+.|+.+|..|++.|.+|+++++ ...+- +. ....++...+.+.+++.|++++
T Consensus 9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~ 88 (333)
T 1vdc_A 9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIF 88 (333)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEEE
Confidence 5799999999999999999999999999997 21110 00 1124667777888889999999
Q ss_pred cCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351 268 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 309 (488)
Q Consensus 268 ~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~ 309 (488)
.++ +..++..+ +.+ .|.+ +|+++.+|.+|+|+|..|..
T Consensus 89 ~~~-v~~i~~~~-~~~-~v~~-~~~~~~~~~vv~A~G~~~~~ 126 (333)
T 1vdc_A 89 TET-VTKVDFSS-KPF-KLFT-DSKAILADAVILAIGAVAKR 126 (333)
T ss_dssp CCC-CCEEECSS-SSE-EEEC-SSEEEEEEEEEECCCEEECC
T ss_pred EeE-EEEEEEcC-CEE-EEEE-CCcEEEcCEEEECCCCCcCC
Confidence 986 88887543 332 4556 77889999999999998764
No 188
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=98.31 E-value=1.2e-06 Score=89.76 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=33.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 89 (488)
..+||||||||+||++||..|++.|. +|+||||.+..
T Consensus 40 ~~~DVvVVGaG~AGl~AA~~aa~~G~---~V~vlEk~~~~ 76 (510)
T 4at0_A 40 YEADVVVAGYGIAGVAASIEAARAGA---DVLVLERTSGW 76 (510)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSS
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCC
Confidence 45799999999999999999999987 89999998753
No 189
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=98.31 E-value=6.2e-07 Score=90.70 Aligned_cols=98 Identities=12% Similarity=0.210 Sum_probs=73.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++++|||||+.|+.+|..|++.|. +|+|+++.+... +... ..+ .....+.
T Consensus 168 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~-----------~~~-----------~~~l~~~ 219 (464)
T 2eq6_A 168 LPKRLLVIGGGAVGLELGQVYRRLGA---EVTLIEYMPEIL---PQGD-----------PET-----------AALLRRA 219 (464)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSC-----------HHH-----------HHHHHHH
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCC---eEEEEEcCCccc---cccC-----------HHH-----------HHHHHHH
Confidence 35799999999999999999999886 899999875421 0000 000 0123566
Q ss_pred HHHCCCeEEeCCcEEEEeCCCc--EEEeC-C--Cc--EEEeccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITN-S--GK--LLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~-~--g~--~i~yd~lVlAtG~~~~ 175 (488)
+++.|++++.+++|++++.++. .+++. + |+ ++.+|.||+|+|..|.
T Consensus 220 l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~ 272 (464)
T 2eq6_A 220 LEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPR 272 (464)
T ss_dssp HHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEES
T ss_pred HHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccC
Confidence 7888999999999999986553 45554 5 76 7999999999998765
No 190
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=98.30 E-value=1.4e-06 Score=87.25 Aligned_cols=95 Identities=15% Similarity=0.274 Sum_probs=75.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
.++++|||||+.|+.+|..+++.|. +|||+++.+... ...+. .+ .....+.+
T Consensus 147 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~ll-----------~~~d~---~~-----------~~~~~~~l 198 (437)
T 4eqs_A 147 VDKVLVVGAGYVSLEVLENLYERGL---HPTLIHRSDKIN-----------KLMDA---DM-----------NQPILDEL 198 (437)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTC---EEEEEESSSCCS-----------TTSCG---GG-----------GHHHHHHH
T ss_pred CcEEEEECCccchhhhHHHHHhcCC---cceeeeeecccc-----------ccccc---hh-----------HHHHHHHh
Confidence 5689999999999999999999987 899999875421 00000 00 12346677
Q ss_pred HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCC
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
++.+++++.+++|.+++. ..+++++|+++++|.+++|+|..|.
T Consensus 199 ~~~gV~i~~~~~v~~~~~--~~v~~~~g~~~~~D~vl~a~G~~Pn 241 (437)
T 4eqs_A 199 DKREIPYRLNEEINAING--NEITFKSGKVEHYDMIIEGVGTHPN 241 (437)
T ss_dssp HHTTCCEEESCCEEEEET--TEEEETTSCEEECSEEEECCCEEES
T ss_pred hccceEEEeccEEEEecC--CeeeecCCeEEeeeeEEEEeceecC
Confidence 889999999999998874 5688999999999999999998764
No 191
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=98.30 E-value=6.8e-06 Score=80.19 Aligned_cols=98 Identities=17% Similarity=0.262 Sum_probs=74.9
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC------c------Cccc----------------------------c
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPEN------H------LLQR----------------------------L 246 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~-~v~lv~~~~------~------~l~~----------------------------~ 246 (488)
.+|+|||+|+.|+.+|..|++.|. +|+++++.+ . ++.. .
T Consensus 5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 84 (369)
T 3d1c_A 5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEH 84 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSTTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCCSS
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCCCCCccccCcccccccCcchhcccCCchhhhhccccccccccccccC
Confidence 469999999999999999999999 999999874 0 0000 0
Q ss_pred -cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 247 -FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 247 -~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
....+...+.+.+++.|+++++++.|++++..+++ ..|.+.++ ++.+|.||+|+|..+.
T Consensus 85 ~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g-~~~~d~vVlAtG~~~~ 144 (369)
T 3d1c_A 85 ISGETYAEYLQVVANHYELNIFENTVVTNISADDAY--YTIATTTE-TYHADYIFVATGDYNF 144 (369)
T ss_dssp CBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSS--EEEEESSC-CEEEEEEEECCCSTTS
T ss_pred CCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCe--EEEEeCCC-EEEeCEEEECCCCCCc
Confidence 01245566677778899999999999999865333 24666776 5999999999999754
No 192
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=98.30 E-value=4.5e-06 Score=79.30 Aligned_cols=100 Identities=9% Similarity=0.109 Sum_probs=70.0
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc----------Ccc--cccCHHHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH----------LLQ--RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE 276 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~----------~l~--~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~ 276 (488)
.|+|||+|+.|+..|..+++.|.+|+++++... +.. ...++++.+...+.+.+.+...+....+..+.
T Consensus 8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (304)
T 4fk1_A 8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMIT 87 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECCEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeEEEEee
Confidence 589999999999999999999999999987531 110 01123455555555555544434444556665
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351 277 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 309 (488)
Q Consensus 277 ~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~ 309 (488)
..+++. ..+.+.+|+++.+|.||+|||.+|..
T Consensus 88 ~~~~~~-~~v~~~~g~~~~a~~liiATGs~p~~ 119 (304)
T 4fk1_A 88 KQSTGL-FEIVTKDHTKYLAERVLLATGMQEEF 119 (304)
T ss_dssp ECTTSC-EEEEETTCCEEEEEEEEECCCCEEEC
T ss_pred ecCCCc-EEEEECCCCEEEeCEEEEccCCcccc
Confidence 443443 36888999999999999999998754
No 193
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=98.30 E-value=3.9e-06 Score=83.37 Aligned_cols=99 Identities=23% Similarity=0.412 Sum_probs=75.5
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCc--EEEEecCCcCccc--ccCHHHH---------HHHHHHHHHcCcEEEcCCeEEE
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLD--TTIIFPENHLLQR--LFTPSLA---------QRYEQLYQQNGVKFVKGASIKN 274 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~--v~lv~~~~~~l~~--~~~~~~~---------~~~~~~l~~~GV~v~~~~~v~~ 274 (488)
++++|||+|+.|+.+|..|++.|.+ |+++++.+.+... .+...+. ....+.+++.||+++.+++++.
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 82 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTA 82 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEEE
T ss_pred CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEEE
Confidence 5799999999999999999999987 9999988654211 0111111 1123456788999999999999
Q ss_pred EEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh
Q 011351 275 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 310 (488)
Q Consensus 275 i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~ 310 (488)
++.. .. .+.+.+|+++.+|.+|+|||.+|...
T Consensus 83 id~~-~~---~v~~~~g~~~~~d~lvlAtG~~p~~~ 114 (410)
T 3ef6_A 83 LDVQ-TR---TISLDDGTTLSADAIVIATGSRARTM 114 (410)
T ss_dssp EETT-TT---EEEETTSCEEECSEEEECCCEEECCC
T ss_pred EECC-CC---EEEECCCCEEECCEEEEccCCcccCC
Confidence 9853 22 57788999999999999999987643
No 194
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=98.30 E-value=2.3e-06 Score=85.66 Aligned_cols=102 Identities=24% Similarity=0.423 Sum_probs=76.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCcCcc------c-ccC-----HHHHHHHHHHHHHcCcEEEcCCeE
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQ------R-LFT-----PSLAQRYEQLYQQNGVKFVKGASI 272 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~--~v~lv~~~~~~l~------~-~~~-----~~~~~~~~~~l~~~GV~v~~~~~v 272 (488)
..+++|||+|+.|+.+|..|++.|. +|+++++.+.+.. + .+. ..+.....+.+++.||+++.++.|
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 83 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV 83 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEE
Confidence 3689999999999999999999998 7999998754321 0 000 011111235677889999999999
Q ss_pred EEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhh
Q 011351 273 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF 312 (488)
Q Consensus 273 ~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~ 312 (488)
+.++.. +. .|.+.+|+++.+|.+|+|+|.+|....+
T Consensus 84 ~~i~~~-~~---~v~~~~g~~~~~d~lviAtG~~p~~~~i 119 (431)
T 1q1r_A 84 TAINRD-RQ---QVILSDGRALDYDRLVLATGGRPRPLPV 119 (431)
T ss_dssp EEEETT-TT---EEEETTSCEEECSEEEECCCEEECCCGG
T ss_pred EEEECC-CC---EEEECCCCEEECCEEEEcCCCCccCCCC
Confidence 999853 22 4677889899999999999999875433
No 195
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.29 E-value=8.7e-07 Score=86.68 Aligned_cols=99 Identities=23% Similarity=0.315 Sum_probs=73.1
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc-c---------ccC-HHHHHHHHHHHHHcCcEEEcCCeEEE
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-R---------LFT-PSLAQRYEQLYQQNGVKFVKGASIKN 274 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~-~---------~~~-~~~~~~~~~~l~~~GV~v~~~~~v~~ 274 (488)
.+.+++|||+|+.|+.+|..|++.| +|+++++.+.+.. + ..+ .++.....+.+++.||+++.++.++.
T Consensus 7 ~~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~~ 85 (367)
T 1xhc_A 7 HGSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKL 85 (367)
T ss_dssp --CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEE
T ss_pred CCCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEEEE
Confidence 4788999999999999999999999 9999998864321 0 011 11112234567788999999999999
Q ss_pred EEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh
Q 011351 275 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 310 (488)
Q Consensus 275 i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~ 310 (488)
++.. .. .|. .+|+++.+|.+|+|||.+|...
T Consensus 86 id~~-~~---~V~-~~g~~~~~d~lViATGs~p~~p 116 (367)
T 1xhc_A 86 IDRG-RK---VVI-TEKGEVPYDTLVLATGARAREP 116 (367)
T ss_dssp EETT-TT---EEE-ESSCEEECSEEEECCCEEECCC
T ss_pred EECC-CC---EEE-ECCcEEECCEEEECCCCCCCCC
Confidence 9853 22 344 6778899999999999988743
No 196
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=98.29 E-value=1.5e-06 Score=86.31 Aligned_cols=97 Identities=23% Similarity=0.417 Sum_probs=74.6
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCcCccc-------cc-----CHHHHHHHHHHHHHcCcEEEcCCeEE
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQR-------LF-----TPSLAQRYEQLYQQNGVKFVKGASIK 273 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~--~v~lv~~~~~~l~~-------~~-----~~~~~~~~~~~l~~~GV~v~~~~~v~ 273 (488)
++++|||+|+.|+.+|..|++.|. +|+++++.+.+... .+ ...+.....+.+++.+++++. .+++
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~~v~ 80 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELIS-DRMV 80 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEEC-CCEE
T ss_pred CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEE-EEEE
Confidence 689999999999999999999998 89999987632110 00 111122345667788999999 8999
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351 274 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 309 (488)
Q Consensus 274 ~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~ 309 (488)
.++.. .. .+.+.+|+++.+|.+|+|||.+|..
T Consensus 81 ~id~~-~~---~v~~~~g~~~~~d~lvlAtG~~p~~ 112 (404)
T 3fg2_P 81 SIDRE-GR---KLLLASGTAIEYGHLVLATGARNRM 112 (404)
T ss_dssp EEETT-TT---EEEESSSCEEECSEEEECCCEEECC
T ss_pred EEECC-CC---EEEECCCCEEECCEEEEeeCCCccC
Confidence 99853 22 4778899999999999999998764
No 197
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=98.29 E-value=3.8e-07 Score=90.77 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=32.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCc-EEEEcCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGR-LCIVSKEAY 88 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~-V~lie~~~~ 88 (488)
.+++|+|||||++|+++|..|++.|. + |+|+|+.+.
T Consensus 3 ~~~dVvIVGaG~aGl~~A~~L~~~G~---~~v~v~E~~~~ 39 (410)
T 3c96_A 3 EPIDILIAGAGIGGLSCALALHQAGI---GKVTLLESSSE 39 (410)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTC---SEEEEEESSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCC---CeEEEEECCCC
Confidence 45899999999999999999999987 8 999999865
No 198
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=98.28 E-value=5e-07 Score=93.25 Aligned_cols=45 Identities=20% Similarity=0.386 Sum_probs=35.8
Q ss_pred HHHCCCeEEeCCcEEEEeCCC--c--EEEeCCCcEEEeccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDIEK--Q--TLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~--~--~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
+.+.|++++.+ +|++++.+. . .|++.+|+++.+|.||.|+|....
T Consensus 175 a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~ 223 (538)
T 2aqj_A 175 AVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGL 223 (538)
T ss_dssp HHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCC
T ss_pred HHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchh
Confidence 34579999998 899997642 2 577788888999999999998654
No 199
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.28 E-value=1.3e-06 Score=89.10 Aligned_cols=98 Identities=14% Similarity=0.196 Sum_probs=75.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
.++++|||||+.|+.+|..|++.|. +|+++++.+... +.+.. .+ .....+.+
T Consensus 176 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d~-----------~~-----------~~~l~~~l 227 (500)
T 1onf_A 176 SKKIGIVGSGYIAVELINVIKRLGI---DSYIFARGNRIL---RKFDE-----------SV-----------INVLENDM 227 (500)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTC---EEEEECSSSSSC---TTSCH-----------HH-----------HHHHHHHH
T ss_pred CCeEEEECChHHHHHHHHHHHHcCC---eEEEEecCCccC---cccch-----------hh-----------HHHHHHHH
Confidence 6799999999999999999999876 899999875421 00000 00 01235667
Q ss_pred HHCCCeEEeCCcEEEEeCCC---cEEEeCCCcE-EEeccEEeccCCCCCc
Q 011351 131 KEKGIEMIYQDPVTSIDIEK---QTLITNSGKL-LKYGSLIVATGCTASR 176 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~-i~yd~lVlAtG~~~~~ 176 (488)
++.|+++++++.|.+++.+. ..+++.+|++ +.+|.+|+|+|..|..
T Consensus 228 ~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~ 277 (500)
T 1onf_A 228 KKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDT 277 (500)
T ss_dssp HHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTT
T ss_pred HhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCC
Confidence 88999999999999998643 3678888887 9999999999988763
No 200
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=98.28 E-value=1.4e-06 Score=86.72 Aligned_cols=98 Identities=14% Similarity=0.216 Sum_probs=75.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
.++++|||+|+.|+.+|..|++.|. +|+++++.+..... .+ ...+ .....+.+
T Consensus 152 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtvv~~~~~~l~~-------~~------~~~~-----------~~~l~~~l 204 (415)
T 3lxd_A 152 AKNAVVIGGGYIGLEAAAVLTKFGV---NVTLLEALPRVLAR-------VA------GEAL-----------SEFYQAEH 204 (415)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSTTTT-------TS------CHHH-----------HHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCC---eEEEEecCCchhhh-------hc------CHHH-----------HHHHHHHH
Confidence 6799999999999999999999886 89999987653100 00 0000 01234567
Q ss_pred HHCCCeEEeCCcEEEEeCCCc---EEEeCCCcEEEeccEEeccCCCCC
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~---~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
++.|++++.++.|.++..++. .|++.+|+++.+|.+|+|+|..|.
T Consensus 205 ~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~ 252 (415)
T 3lxd_A 205 RAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPC 252 (415)
T ss_dssp HHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEES
T ss_pred HhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccC
Confidence 788999999999999987642 578889999999999999998765
No 201
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=98.27 E-value=4.9e-06 Score=82.29 Aligned_cols=100 Identities=15% Similarity=0.123 Sum_probs=78.1
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc-------------------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------- 244 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~------------------------------------------- 244 (488)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~ 86 (399)
T 2x3n_A 7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGEL 86 (399)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCCE
Confidence 4799999999999999999999999999998654300
Q ss_pred --c--------------ccCHHHHHHHHHHHHHc-CcEEEcCCeEEEEEeCCCCcEE-EEEeCCCcEEEcCEEEEeecCc
Q 011351 245 --R--------------LFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVA-AVKLEDGSTIDADTIVIGIGAK 306 (488)
Q Consensus 245 --~--------------~~~~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~~~v~-~v~l~~g~~i~~D~vi~a~G~~ 306 (488)
. .....+.+.+.+.+++. |+++++++++++++.+++ .+. .+.+.+|+++.+|.||.|+|..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~-~v~g~v~~~~g~~~~ad~vV~AdG~~ 165 (399)
T 2x3n_A 87 LRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDER-HAIDQVRLNDGRVLRPRVVVGADGIA 165 (399)
T ss_dssp EEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTT-SCEEEEEETTSCEEEEEEEEECCCTT
T ss_pred EEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCC-ceEEEEEECCCCEEECCEEEECCCCC
Confidence 0 00024455666677776 999999999999987544 342 5778899899999999999997
Q ss_pred cC
Q 011351 307 PT 308 (488)
Q Consensus 307 p~ 308 (488)
..
T Consensus 166 s~ 167 (399)
T 2x3n_A 166 SY 167 (399)
T ss_dssp CH
T ss_pred hH
Confidence 64
No 202
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=98.26 E-value=1.1e-06 Score=88.56 Aligned_cols=98 Identities=17% Similarity=0.250 Sum_probs=73.2
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++++|||||++|+.+|..|++.|. +|+|+++.+...-. .+ ...+ .....+.
T Consensus 148 ~~~~vvIiG~G~~g~e~A~~l~~~g~---~Vtlv~~~~~~l~~-------~~------~~~~-----------~~~l~~~ 200 (447)
T 1nhp_A 148 EVNNVVVIGSGYIGIEAAEAFAKAGK---KVTVIDILDRPLGV-------YL------DKEF-----------TDVLTEE 200 (447)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSTTTT-------TC------CHHH-----------HHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC---eEEEEecCcccccc-------cC------CHHH-----------HHHHHHH
Confidence 46899999999999999999999986 89999987642100 00 0000 1123556
Q ss_pred HHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
+++.|++++.++.|.+++.+++ .+.+ ++.++.+|.+|+|+|..|.
T Consensus 201 l~~~gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d~vi~a~G~~p~ 247 (447)
T 1nhp_A 201 MEANNITIATGETVERYEGDGRVQKVVT-DKNAYDADLVVVAVGVRPN 247 (447)
T ss_dssp HHTTTEEEEESCCEEEEECSSBCCEEEE-SSCEEECSEEEECSCEEES
T ss_pred HHhCCCEEEcCCEEEEEEccCcEEEEEE-CCCEEECCEEEECcCCCCC
Confidence 6778999999999999987643 3555 5567999999999998765
No 203
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=98.26 E-value=5.7e-07 Score=90.08 Aligned_cols=98 Identities=22% Similarity=0.312 Sum_probs=74.4
Q ss_pred CeEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCcCccccc----------CHHHHHHHHHHHHHcCcEEEcCCeEEEE
Q 011351 208 KKVVVVGGGYIGMEVAAAAVG--WKLDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQNGVKFVKGASIKNL 275 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~--~g~~v~lv~~~~~~l~~~~----------~~~~~~~~~~~l~~~GV~v~~~~~v~~i 275 (488)
++|+|||+|+.|+.+|..|++ .+.+|+++++.+.+..... ..++...+.+.+++.||+++.+ +++.+
T Consensus 3 ~~vvIIGgG~aGl~aA~~L~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i 81 (430)
T 3h28_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAESI 81 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEEEE
T ss_pred CCEEEECccHHHHHHHHHHHcCCCCCeEEEECCCCCCCcCCCcchhccCccCHHHHHHHHHHHHHhcCCEEEEE-EEEEE
Confidence 689999999999999999999 7889999999876532110 0111122344566789999975 89999
Q ss_pred EeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh
Q 011351 276 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 310 (488)
Q Consensus 276 ~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~ 310 (488)
+.+ .. .+.+++|+++.+|.+|+|+|.+|+..
T Consensus 82 d~~-~~---~v~~~~g~~i~~d~liiAtG~~~~~p 112 (430)
T 3h28_A 82 DPD-AN---TVTTQSGKKIEYDYLVIATGPKLVFG 112 (430)
T ss_dssp ETT-TT---EEEETTCCEEECSEEEECCCCEEECC
T ss_pred ECC-CC---EEEECCCcEEECCEEEEcCCcccccC
Confidence 853 22 47788998999999999999998643
No 204
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=98.24 E-value=5.4e-06 Score=85.02 Aligned_cols=103 Identities=21% Similarity=0.277 Sum_probs=80.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC--cCc-----------ccccCHHHHHHHHHHHHHcCcEEEcCCeEE
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN--HLL-----------QRLFTPSLAQRYEQLYQQNGVKFVKGASIK 273 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~--~~l-----------~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~ 273 (488)
..+++|||+|+.|+.+|..|++.|.+|+++++.. .+. +....+.+...+.+.+++.|++++.+++++
T Consensus 212 ~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v~ 291 (521)
T 1hyu_A 212 AYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSAS 291 (521)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSCCEE
T ss_pred cccEEEECCcHHHHHHHHHHHhCCCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCCEEE
Confidence 4579999999999999999999999999997531 111 011234677788888899999999999999
Q ss_pred EEEeCCC-CcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351 274 NLEAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPTV 309 (488)
Q Consensus 274 ~i~~~~~-~~v~~v~l~~g~~i~~D~vi~a~G~~p~~ 309 (488)
.+....+ +....|.+.+|+++.+|.||+|+|.+|..
T Consensus 292 ~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~ 328 (521)
T 1hyu_A 292 KLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRN 328 (521)
T ss_dssp EEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred EEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCC
Confidence 9974321 22246788899899999999999988753
No 205
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=98.24 E-value=8.1e-06 Score=84.77 Aligned_cols=100 Identities=17% Similarity=0.166 Sum_probs=77.7
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc------------------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------ 245 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~------------------------------------------ 245 (488)
..|+|||+|..|+.+|..|++.|.+|+++++.+.+...
T Consensus 127 ~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~~ 206 (571)
T 1y0p_A 127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDP 206 (571)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence 57999999999999999999999999999987533210
Q ss_pred ---------------------------------------------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCC
Q 011351 246 ---------------------------------------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD 280 (488)
Q Consensus 246 ---------------------------------------------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~ 280 (488)
..+..+...+.+.+++.||+++++++++++..+++
T Consensus 207 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~ 286 (571)
T 1y0p_A 207 ALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDK 286 (571)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTT
T ss_pred HHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCC
Confidence 00123445566777888999999999999987544
Q ss_pred CcEEEEEeC--CCc--EEEcCEEEEeecCcc
Q 011351 281 GRVAAVKLE--DGS--TIDADTIVIGIGAKP 307 (488)
Q Consensus 281 ~~v~~v~l~--~g~--~i~~D~vi~a~G~~p 307 (488)
+++.+|.+. +|+ ++.+|.||+|+|...
T Consensus 287 g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~ 317 (571)
T 1y0p_A 287 GTVKGILVKGMYKGYYWVKADAVILATGGFA 317 (571)
T ss_dssp SCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred CeEEEEEEEeCCCcEEEEECCeEEEeCCCcc
Confidence 777766665 675 689999999999754
No 206
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=98.24 E-value=1.3e-06 Score=88.74 Aligned_cols=99 Identities=15% Similarity=0.221 Sum_probs=75.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++++|||||+.|+.+|..|++.|. +|+++++.+... +.+.. .+ .....+.
T Consensus 184 ~~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d~-----------~~-----------~~~l~~~ 235 (479)
T 2hqm_A 184 QPKKVVVVGAGYIGIELAGVFHGLGS---ETHLVIRGETVL---RKFDE-----------CI-----------QNTITDH 235 (479)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHTTC---EEEEECSSSSSC---TTSCH-----------HH-----------HHHHHHH
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---ceEEEEeCCccc---cccCH-----------HH-----------HHHHHHH
Confidence 45799999999999999999999886 899999876421 00000 00 0123556
Q ss_pred HHHCCCeEEeCCcEEEEeCCC----cEEEeCCC-cEEEeccEEeccCCCCCc
Q 011351 130 YKEKGIEMIYQDPVTSIDIEK----QTLITNSG-KLLKYGSLIVATGCTASR 176 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~----~~v~~~~g-~~i~yd~lVlAtG~~~~~ 176 (488)
+++.|++++.+++|.+++.+. ..+++.+| +++.+|.+|+|+|..|..
T Consensus 236 l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~ 287 (479)
T 2hqm_A 236 YVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL 287 (479)
T ss_dssp HHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECC
T ss_pred HHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCcc
Confidence 778899999999999998642 36788888 789999999999987763
No 207
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.24 E-value=8.4e-07 Score=89.53 Aligned_cols=98 Identities=14% Similarity=0.279 Sum_probs=72.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++++|||||+.|+.+|..|++.|. +|+|+++.+... |.+. ..+ .....+.
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~-----------~~~-----------~~~l~~~ 220 (455)
T 1ebd_A 169 VPKSLVVIGGGYIGIELGTAYANFGT---KVTILEGAGEIL---SGFE-----------KQM-----------AAIIKKR 220 (455)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSS---TTSC-----------HHH-----------HHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCCccc---cccC-----------HHH-----------HHHHHHH
Confidence 35799999999999999999999986 899999875421 0000 000 0123456
Q ss_pred HHHCCCeEEeCCcEEEEeCCCc--EEEeC---CCcEEEeccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITN---SGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~---~g~~i~yd~lVlAtG~~~~ 175 (488)
+++.|++++.+++|.+++.+.. .+++. +++++.+|.+|+|+|..|.
T Consensus 221 l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~ 271 (455)
T 1ebd_A 221 LKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPN 271 (455)
T ss_dssp HHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEES
T ss_pred HHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcc
Confidence 7788999999999999986553 34443 4567999999999998775
No 208
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=98.23 E-value=1.5e-06 Score=88.63 Aligned_cols=98 Identities=17% Similarity=0.301 Sum_probs=75.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHc---CCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEH---GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT 126 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~---g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (488)
..++++|||||+.|+.+|..|++. |. +|+|+++.+... +.+.. .+ ....
T Consensus 190 ~~~~vvViGgG~ig~E~A~~l~~~~~~g~---~Vtlv~~~~~~l---~~~d~-----------~~-----------~~~l 241 (495)
T 2wpf_A 190 PPRRVLTVGGGFISVEFAGIFNAYKPPGG---KVTLCYRNNLIL---RGFDE-----------TI-----------REEV 241 (495)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHCCTTC---EEEEEESSSSSC---TTSCH-----------HH-----------HHHH
T ss_pred cCCeEEEECCCHHHHHHHHHHHhhCCCCC---eEEEEEcCCccc---cccCH-----------HH-----------HHHH
Confidence 357999999999999999999998 76 899999876421 10000 00 1124
Q ss_pred HhHHHHCCCeEEeCCcEEEEeCCC---cEEEeCCCcEEEeccEEeccCCCCC
Q 011351 127 PEWYKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 127 ~~~~~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
.+.+++.|++++.++.|.+++.+. ..+++.+|+++.+|.+|+|+|..|.
T Consensus 242 ~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~ 293 (495)
T 2wpf_A 242 TKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPR 293 (495)
T ss_dssp HHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEEC
T ss_pred HHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCccc
Confidence 566788999999999999998653 3678888988999999999998765
No 209
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=98.23 E-value=1.4e-06 Score=90.91 Aligned_cols=98 Identities=19% Similarity=0.376 Sum_probs=77.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++++|||||+.|+.+|..|++.|. +|+++++.+... +.+.. .+ .....+.
T Consensus 186 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~~-----------~~-----------~~~l~~~ 237 (588)
T 3ics_A 186 KPRHATVIGGGFIGVEMVENLRERGI---EVTLVEMANQVM---PPIDY-----------EM-----------AAYVHEH 237 (588)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSC---TTSCH-----------HH-----------HHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCccc---ccCCH-----------HH-----------HHHHHHH
Confidence 35799999999999999999999886 899999765421 00000 00 1123566
Q ss_pred HHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
+++.|++++.++.|.+++.+...+++.+|+++.+|.+|+|+|..|.
T Consensus 238 l~~~GV~i~~~~~v~~i~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~ 283 (588)
T 3ics_A 238 MKNHDVELVFEDGVDALEENGAVVRLKSGSVIQTDMLILAIGVQPE 283 (588)
T ss_dssp HHHTTCEEECSCCEEEEEGGGTEEEETTSCEEECSEEEECSCEEEC
T ss_pred HHHcCCEEEECCeEEEEecCCCEEEECCCCEEEcCEEEEccCCCCC
Confidence 7889999999999999988767899999999999999999998765
No 210
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=98.22 E-value=2.9e-06 Score=86.67 Aligned_cols=35 Identities=17% Similarity=0.459 Sum_probs=31.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
+++||+|||||++|+++|+.|+++|. +|+|+|+++
T Consensus 2 ~~~DVvIIGgGi~G~~~A~~La~~G~---~V~llE~~~ 36 (501)
T 2qcu_A 2 ETKDLIVIGGGINGAGIAADAAGRGL---SVLMLEAQD 36 (501)
T ss_dssp -CBSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCC---CEEEEECCC
Confidence 35799999999999999999999987 899999975
No 211
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=98.22 E-value=1.6e-06 Score=88.27 Aligned_cols=99 Identities=17% Similarity=0.255 Sum_probs=76.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHc---CCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEH---GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT 126 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~---g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (488)
..++++|||||+.|+.+|..|++. |. +|+++++.+... +.+.. .+ ....
T Consensus 186 ~~~~vvViGgG~ig~E~A~~l~~~~~~g~---~Vtlv~~~~~~l---~~~d~-----------~~-----------~~~l 237 (490)
T 1fec_A 186 APKRALCVGGGYISIEFAGIFNAYKARGG---QVDLAYRGDMIL---RGFDS-----------EL-----------RKQL 237 (490)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHSCTTC---EEEEEESSSSSS---TTSCH-----------HH-----------HHHH
T ss_pred cCCeEEEECCCHHHHHHHHHHHhhccCcC---eEEEEEcCCCcc---cccCH-----------HH-----------HHHH
Confidence 357999999999999999999998 76 899999876421 00000 00 1224
Q ss_pred HhHHHHCCCeEEeCCcEEEEeCCC---cEEEeCCCcEEEeccEEeccCCCCCc
Q 011351 127 PEWYKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTASR 176 (488)
Q Consensus 127 ~~~~~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~i~yd~lVlAtG~~~~~ 176 (488)
.+.+++.|++++.++.|.+++.+. ..+++.+|+++.+|.+|+|+|..|..
T Consensus 238 ~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~ 290 (490)
T 1fec_A 238 TEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRS 290 (490)
T ss_dssp HHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred HHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCc
Confidence 566788999999999999998653 36788888889999999999987753
No 212
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=98.21 E-value=6.9e-06 Score=78.44 Aligned_cols=99 Identities=18% Similarity=0.251 Sum_probs=75.7
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc-----------Cccc----ccCHHHHHHHHHHHHHcCcEEEcCCeE
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-----------LLQR----LFTPSLAQRYEQLYQQNGVKFVKGASI 272 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~-----------~l~~----~~~~~~~~~~~~~l~~~GV~v~~~~~v 272 (488)
.+++|||+|+.|+.+|..|++.|.+|+++++... ..+. ...+.+.+.+.+.+++.|++++.++ +
T Consensus 6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v 84 (320)
T 1trb_A 6 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH-I 84 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC-E
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee-e
Confidence 4799999999999999999999999999985310 0011 1224667777888889999999986 8
Q ss_pred EEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh
Q 011351 273 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 310 (488)
Q Consensus 273 ~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~ 310 (488)
+.++.. ++.+ .+ +.+++++.+|.+|+|+|.+|...
T Consensus 85 ~~i~~~-~~~~-~v-~~~~~~~~~~~lv~AtG~~~~~~ 119 (320)
T 1trb_A 85 NKVDLQ-NRPF-RL-NGDNGEYTCDALIIATGASARYL 119 (320)
T ss_dssp EEEECS-SSSE-EE-EESSCEEEEEEEEECCCEEECCC
T ss_pred eEEEec-CCEE-EE-EeCCCEEEcCEEEECCCCCcCCC
Confidence 888754 3333 34 56788899999999999987643
No 213
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=98.21 E-value=6.5e-06 Score=82.77 Aligned_cols=102 Identities=19% Similarity=0.193 Sum_probs=75.4
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCcCc----cc---------------------------------c
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLL----QR---------------------------------L 246 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~--~v~lv~~~~~~l----~~---------------------------------~ 246 (488)
..++|+|||+|+.|+.+|..|++.|. +|+++++.+.+. .. .
T Consensus 5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~ 84 (447)
T 2gv8_A 5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL 84 (447)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCch
Confidence 35789999999999999999999999 999999874321 00 0
Q ss_pred --------------c--------------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC---Cc---
Q 011351 247 --------------F--------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GS--- 292 (488)
Q Consensus 247 --------------~--------------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~---g~--- 292 (488)
+ ...+.+++.+..++.++.++++++|+.++..+ +. ..|.+.+ |+
T Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~-~~-~~V~~~~~~~G~~~~ 162 (447)
T 2gv8_A 85 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKD-GS-WVVTYKGTKAGSPIS 162 (447)
T ss_dssp CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEET-TE-EEEEEEESSTTCCEE
T ss_pred hhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCC-Ce-EEEEEeecCCCCeeE
Confidence 0 01455666666667788899999999998643 32 2455544 66
Q ss_pred EEEcCEEEEeecC--ccCC
Q 011351 293 TIDADTIVIGIGA--KPTV 309 (488)
Q Consensus 293 ~i~~D~vi~a~G~--~p~~ 309 (488)
++.+|.||+|+|. .|+.
T Consensus 163 ~~~~d~VVvAtG~~s~p~~ 181 (447)
T 2gv8_A 163 KDIFDAVSICNGHYEVPYI 181 (447)
T ss_dssp EEEESEEEECCCSSSSBCB
T ss_pred EEEeCEEEECCCCCCCCCC
Confidence 7999999999998 6653
No 214
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=98.20 E-value=5.5e-06 Score=79.84 Aligned_cols=99 Identities=19% Similarity=0.303 Sum_probs=76.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC---cC--------ccc----ccCHHHHHHHHHHHHHcCcEEEcCCe
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN---HL--------LQR----LFTPSLAQRYEQLYQQNGVKFVKGAS 271 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~---~~--------l~~----~~~~~~~~~~~~~l~~~GV~v~~~~~ 271 (488)
..+++|||+|+.|+.+|..|++.|.+|+++++.. .+ .+. ...+++.+.+.+.+++.|++++.++
T Consensus 14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~- 92 (335)
T 2a87_A 14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRMED- 92 (335)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECCC-
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEee-
Confidence 4579999999999999999999999999998531 00 011 1124667777788888999999987
Q ss_pred EEEEEeCCCCcEEEE-EeCCCcEEEcCEEEEeecCccCC
Q 011351 272 IKNLEAGSDGRVAAV-KLEDGSTIDADTIVIGIGAKPTV 309 (488)
Q Consensus 272 v~~i~~~~~~~v~~v-~l~~g~~i~~D~vi~a~G~~p~~ 309 (488)
+..++. ++.. .+ .+++|+++.+|.+|+|+|..|..
T Consensus 93 v~~i~~--~~~~-~v~~~~~g~~~~~d~lviAtG~~~~~ 128 (335)
T 2a87_A 93 VESVSL--HGPL-KSVVTADGQTHRARAVILAMGAAARY 128 (335)
T ss_dssp EEEEEC--SSSS-EEEEETTSCEEEEEEEEECCCEEECC
T ss_pred EEEEEe--CCcE-EEEEeCCCCEEEeCEEEECCCCCccC
Confidence 888875 2222 35 67888899999999999998764
No 215
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=98.20 E-value=1.5e-06 Score=90.41 Aligned_cols=35 Identities=26% Similarity=0.293 Sum_probs=32.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
.+||||||||+||++||..|++.|. +|+||||.+.
T Consensus 7 ~~DVvVVGaG~AGl~AA~~la~~G~---~V~vlEK~~~ 41 (588)
T 2wdq_A 7 EFDAVVIGAGGAGMRAALQISQSGQ---TCALLSKVFP 41 (588)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCG
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCC---cEEEEecCCC
Confidence 5799999999999999999999987 8999999853
No 216
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=98.19 E-value=2.7e-06 Score=87.21 Aligned_cols=99 Identities=10% Similarity=0.110 Sum_probs=74.9
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCH
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (488)
...+++++|||||+.|+..|..+++.|. +|||+++...++. . +. ++ .....
T Consensus 220 ~~lP~~lvIIGgG~IGlE~A~~~~~lG~---~VTii~~~~~L~~----~--------D~---ei-----------~~~l~ 270 (542)
T 4b1b_A 220 KKDPGKTLVVGASYVALECSGFLNSLGY---DVTVAVRSIVLRG----F--------DQ---QC-----------AVKVK 270 (542)
T ss_dssp SSCCCSEEEECCSHHHHHHHHHHHHHTC---CEEEEESSCSSTT----S--------CH---HH-----------HHHHH
T ss_pred ccCCceEEEECCCHHHHHHHHHHHhcCC---eEEEecccccccc----c--------ch---hH-----------HHHHH
Confidence 3446899999999999999999999987 8999986433211 0 00 00 12245
Q ss_pred hHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351 128 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 128 ~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
+.+++.+++++.+..+..+..... .+.+.++..+.+|.|++|+|-+|+
T Consensus 271 ~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pn 320 (542)
T 4b1b_A 271 LYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGD 320 (542)
T ss_dssp HHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEES
T ss_pred HHHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCC
Confidence 677889999999999998876654 456778888999999999997665
No 217
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=98.18 E-value=2e-06 Score=88.29 Aligned_cols=96 Identities=20% Similarity=0.236 Sum_probs=74.0
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK 131 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (488)
++++|||||+.|+.+|..|++.|. +|+++++.+... +.+. ..+ .....+.++
T Consensus 215 ~~vvViGgG~~g~E~A~~l~~~G~---~Vtlv~~~~~~l---~~~~-----------~~~-----------~~~l~~~l~ 266 (523)
T 1mo9_A 215 STVVVVGGSKTAVEYGCFFNATGR---RTVMLVRTEPLK---LIKD-----------NET-----------RAYVLDRMK 266 (523)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCTTT---TCCS-----------HHH-----------HHHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHcCC---eEEEEEecCccc---cccc-----------HHH-----------HHHHHHHHH
Confidence 899999999999999999999986 899999876421 0000 000 122456678
Q ss_pred HCCCeEEeCCcEEEEeC--CC----cEEEeCCCc-EEEeccEEeccCCCCC
Q 011351 132 EKGIEMIYQDPVTSIDI--EK----QTLITNSGK-LLKYGSLIVATGCTAS 175 (488)
Q Consensus 132 ~~~i~~~~~~~v~~id~--~~----~~v~~~~g~-~i~yd~lVlAtG~~~~ 175 (488)
+.|++++.+++|++++. +. ..|++.+|+ ++.+|.+|+|+|..|.
T Consensus 267 ~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~ 317 (523)
T 1mo9_A 267 EQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPR 317 (523)
T ss_dssp HTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEEC
T ss_pred hCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccC
Confidence 89999999999999986 33 347777887 8999999999998765
No 218
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=98.18 E-value=1.9e-06 Score=82.38 Aligned_cols=37 Identities=27% Similarity=0.371 Sum_probs=33.0
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHc--CCCCCcEEEEcCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAYA 89 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~--g~~~~~V~lie~~~~~ 89 (488)
..+||+|||||++|+++|..|+++ |. +|+|||+.+..
T Consensus 78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~---~V~LiEk~~~~ 116 (344)
T 3jsk_A 78 AETDIVIVGAGSCGLSAAYVLSTLRPDL---RITIVEAGVAP 116 (344)
T ss_dssp HBCSEEEECCSHHHHHHHHHHHHHCTTS---CEEEEESSSSC
T ss_pred CcCCEEEECccHHHHHHHHHHHhcCCCC---EEEEEeCCCcc
Confidence 458999999999999999999997 66 89999998654
No 219
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=98.18 E-value=1.1e-06 Score=89.32 Aligned_cols=98 Identities=13% Similarity=0.168 Sum_probs=74.0
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++++|||||+.|+.+|..|++.|. +|+|+++.+... +.+. ..+ .....+.
T Consensus 184 ~~~~vvViGgG~ig~E~A~~l~~~G~---~Vtlv~~~~~~l---~~~~-----------~~~-----------~~~l~~~ 235 (482)
T 1ojt_A 184 VPGKLLIIGGGIIGLEMGTVYSTLGS---RLDVVEMMDGLM---QGAD-----------RDL-----------VKVWQKQ 235 (482)
T ss_dssp CCSEEEEESCSHHHHHHHHHHHHHTC---EEEEECSSSSSS---TTSC-----------HHH-----------HHHHHHH
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEECCccc---cccC-----------HHH-----------HHHHHHH
Confidence 35799999999999999999999986 899999876421 0000 000 0123456
Q ss_pred HHHCCCeEEeCCcEEEEeCCCc--EEEeCC----CcEEEeccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNS----GKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~----g~~i~yd~lVlAtG~~~~ 175 (488)
+++.||+++++++|.+++.+.. .+++.+ |+++.+|.+|+|+|..|.
T Consensus 236 l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~ 287 (482)
T 1ojt_A 236 NEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPN 287 (482)
T ss_dssp HGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEEC
T ss_pred HHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcC
Confidence 7788999999999999986543 566666 777999999999998775
No 220
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=98.18 E-value=8.1e-06 Score=80.69 Aligned_cols=100 Identities=17% Similarity=0.278 Sum_probs=74.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc-----ccCHHHHH----------------------------
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LFTPSLAQ---------------------------- 253 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~-----~~~~~~~~---------------------------- 253 (488)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+..... .+.+...+
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~ 84 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE 84 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCCC
Confidence 468999999999999999999999999999987653111 01221111
Q ss_pred ---------------HHHHHHHH--cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 254 ---------------RYEQLYQQ--NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 254 ---------------~~~~~l~~--~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
.+.+.|.+ .|+++++++++++++.+++ .+ .+.+.+|+++.+|+||.|.|....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~v-~v~~~~g~~~~ad~vV~AdG~~S~ 154 (397)
T 2vou_A 85 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSE-TV-QMRFSDGTKAEANWVIGADGGASV 154 (397)
T ss_dssp EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSS-CE-EEEETTSCEEEESEEEECCCTTCH
T ss_pred ccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCC-EE-EEEECCCCEEECCEEEECCCcchh
Confidence 12222222 3899999999999987544 33 588899999999999999998764
No 221
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=98.17 E-value=5.6e-07 Score=89.38 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=31.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHc--CCCCCcEEEEcCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEA 87 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~--g~~~~~V~lie~~~ 87 (488)
.++||+|||||++|+++|+.|+++ |. +|+|||++.
T Consensus 35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~---~V~vlE~~~ 71 (405)
T 3c4n_A 35 EAFDIVVIGAGRMGAACAFYLRQLAPGR---SLLLVEEGG 71 (405)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHCTTS---CEEEECSSC
T ss_pred CcCCEEEECCcHHHHHHHHHHHhcCCCC---eEEEEeCCC
Confidence 347999999999999999999999 87 899999974
No 222
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=98.16 E-value=1.6e-06 Score=88.08 Aligned_cols=99 Identities=17% Similarity=0.309 Sum_probs=73.3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++++|||||+.|+.+|..|++.|. +|+|+++.+... +.+. ..+ .....+.
T Consensus 182 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~-----------~~~-----------~~~l~~~ 233 (478)
T 1v59_A 182 IPKRLTIIGGGIIGLEMGSVYSRLGS---KVTVVEFQPQIG---ASMD-----------GEV-----------AKATQKF 233 (478)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---SSSC-----------HHH-----------HHHHHHH
T ss_pred cCceEEEECCCHHHHHHHHHHHHcCC---EEEEEEeCCccc---cccC-----------HHH-----------HHHHHHH
Confidence 35799999999999999999999986 899999876421 0000 000 1224566
Q ss_pred HHHCCCeEEeCCcEEEEeC--CCc--EEEeC-----CCcEEEeccEEeccCCCCCc
Q 011351 130 YKEKGIEMIYQDPVTSIDI--EKQ--TLITN-----SGKLLKYGSLIVATGCTASR 176 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~--~~~--~v~~~-----~g~~i~yd~lVlAtG~~~~~ 176 (488)
+++.|++++.++.|++++. +.+ .+.+. +++++.+|.+|+|+|..|..
T Consensus 234 l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~ 289 (478)
T 1v59_A 234 LKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYI 289 (478)
T ss_dssp HHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECC
T ss_pred HHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCC
Confidence 7889999999999999986 443 45554 35679999999999987753
No 223
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=98.16 E-value=1.1e-05 Score=79.59 Aligned_cols=101 Identities=18% Similarity=0.187 Sum_probs=76.4
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC------cccc-----------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL------LQRL----------------------------------- 246 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~------l~~~----------------------------------- 246 (488)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.. ....
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 82 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ 82 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCc
Confidence 36999999999999999999999999999987531 0000
Q ss_pred -----------------cC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe-CCCc--EEEcCEEEEeecC
Q 011351 247 -----------------FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGA 305 (488)
Q Consensus 247 -----------------~~-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l-~~g~--~i~~D~vi~a~G~ 305 (488)
++ ..+.+.+.+.+.+.|+++++++++++++..+++.+ .|.+ .+|+ ++.+|+||.|.|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~-~v~~~~~g~~~~~~a~~vV~AdG~ 161 (394)
T 1k0i_A 83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERP-YVTFERDGERLRLDCDYIAGCDGF 161 (394)
T ss_dssp EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSC-EEEEEETTEEEEEECSEEEECCCT
T ss_pred eEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCce-EEEEecCCcEEEEEeCEEEECCCC
Confidence 01 23445566667778999999999999986433333 4666 6887 7999999999999
Q ss_pred ccCC
Q 011351 306 KPTV 309 (488)
Q Consensus 306 ~p~~ 309 (488)
....
T Consensus 162 ~S~v 165 (394)
T 1k0i_A 162 HGIS 165 (394)
T ss_dssp TCST
T ss_pred CcHH
Confidence 7753
No 224
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=98.16 E-value=2e-05 Score=75.68 Aligned_cols=98 Identities=12% Similarity=0.127 Sum_probs=71.2
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc-------------------ccCHHHHHHHH------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------LFTPSLAQRYE------------ 256 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~-------------------~~~~~~~~~~~------------ 256 (488)
..|+|||+|++|+.+|..|++.|.+|+++++.+.+-.+ ...+.+.+.+.
T Consensus 3 ~dV~IIGaG~~Gl~~A~~L~~~G~~V~vlE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T 1yvv_A 3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFTARDRRFATAVKQWQAQGHVAEWT 82 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEETTEEEECSCCCBCCCSHHHHHHHHHHHHHTSEEEEC
T ss_pred ceEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCcccceeEecCCCeEecCCCeEecCCHHHHHHHHHHHhCCCeeecc
Confidence 46999999999999999999999999999987543110 01122222222
Q ss_pred -------------------------------HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEE-cCEEEEeec
Q 011351 257 -------------------------------QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID-ADTIVIGIG 304 (488)
Q Consensus 257 -------------------------------~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~-~D~vi~a~G 304 (488)
+.+.+ |++++++++|++++..+++ + .|.+.+|+.+. +|.||.|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-g~~i~~~~~v~~i~~~~~~-~-~v~~~~g~~~~~a~~vV~a~g 159 (336)
T 1yvv_A 83 PLLYNFHAGRLSPSPDEQVRWVGKPGMSAITRAMRG-DMPVSFSCRITEVFRGEEH-W-NLLDAEGQNHGPFSHVIIATP 159 (336)
T ss_dssp CCEEEESSSBCCCCCTTSCEEEESSCTHHHHHHHHT-TCCEECSCCEEEEEECSSC-E-EEEETTSCEEEEESEEEECSC
T ss_pred ccceeccCcccccCCCCCccEEcCccHHHHHHHHHc-cCcEEecCEEEEEEEeCCE-E-EEEeCCCcCccccCEEEEcCC
Confidence 22222 8999999999999876444 3 57788888764 999999999
Q ss_pred CccC
Q 011351 305 AKPT 308 (488)
Q Consensus 305 ~~p~ 308 (488)
....
T Consensus 160 ~~~~ 163 (336)
T 1yvv_A 160 APQA 163 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
No 225
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=98.15 E-value=1.2e-05 Score=76.92 Aligned_cols=99 Identities=16% Similarity=0.208 Sum_probs=74.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc---C--------ccc---ccCHHHHHHHHHHHHHcCcEEEcCCeE
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---L--------LQR---LFTPSLAQRYEQLYQQNGVKFVKGASI 272 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~---~--------l~~---~~~~~~~~~~~~~l~~~GV~v~~~~~v 272 (488)
..+++|||+|+.|+.+|..|++.|.+|+++++... + .+. ....++.+.+.+.+++.|++++. .++
T Consensus 16 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v 94 (319)
T 3cty_A 16 DFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREG-VEV 94 (319)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEET-CCE
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEE-eeE
Confidence 35799999999999999999999999999998421 0 111 11245667777888889999998 688
Q ss_pred EEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351 273 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 309 (488)
Q Consensus 273 ~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~ 309 (488)
+.++..+ +.+ .+.+ +++++.+|.+|+|+|..|..
T Consensus 95 ~~i~~~~-~~~-~v~~-~~~~~~~~~li~AtG~~~~~ 128 (319)
T 3cty_A 95 RSIKKTQ-GGF-DIET-NDDTYHAKYVIITTGTTHKH 128 (319)
T ss_dssp EEEEEET-TEE-EEEE-SSSEEEEEEEEECCCEEECC
T ss_pred EEEEEeC-CEE-EEEE-CCCEEEeCEEEECCCCCccc
Confidence 8887542 222 3555 56789999999999988764
No 226
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=98.15 E-value=4.3e-06 Score=84.14 Aligned_cols=100 Identities=23% Similarity=0.404 Sum_probs=70.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCcCccc------cc-----CHHHHHHHHHHH-HHcCcEEEcCCeE
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQR------LF-----TPSLAQRYEQLY-QQNGVKFVKGASI 272 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~--g~~v~lv~~~~~~l~~------~~-----~~~~~~~~~~~l-~~~GV~v~~~~~v 272 (488)
.++++|||+|+.|+.+|..|++. +.+|+++++.+.+... .+ ...+.....+.+ ++.|+++++++++
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v 82 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEV 82 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEE
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEE
Confidence 36899999999999999999987 7799999998753211 00 011112222333 6789999999999
Q ss_pred EEEEeCCCCcEEEEEeCCC-cEEEcCEEEEeecCccCCh
Q 011351 273 KNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPTVS 310 (488)
Q Consensus 273 ~~i~~~~~~~v~~v~l~~g-~~i~~D~vi~a~G~~p~~~ 310 (488)
+.++.. . ..+.+.++ .++.+|.+|+|||.+|...
T Consensus 83 ~~i~~~--~--~~v~~~~g~~~~~~d~lviAtG~~p~~p 117 (449)
T 3kd9_A 83 IEVDTG--Y--VRVRENGGEKSYEWDYLVFANGASPQVP 117 (449)
T ss_dssp EEECSS--E--EEEECSSSEEEEECSEEEECCCEEECCC
T ss_pred EEEecC--C--CEEEECCceEEEEcCEEEECCCCCCCCC
Confidence 998632 2 24666777 4799999999999988643
No 227
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=98.15 E-value=2.3e-06 Score=86.81 Aligned_cols=99 Identities=11% Similarity=0.170 Sum_probs=72.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++++|||||+.|+.+|..|++.|. +|+|+++.+...-. .+. ..+ .....+.
T Consensus 177 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l~~--~~~-----------~~~-----------~~~l~~~ 229 (474)
T 1zmd_A 177 VPEKMVVIGAGVIGVELGSVWQRLGA---DVTAVEFLGHVGGV--GID-----------MEI-----------SKNFQRI 229 (474)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSSCS--SCC-----------HHH-----------HHHHHHH
T ss_pred cCceEEEECCCHHHHHHHHHHHHcCC---EEEEEeccCccCCc--ccC-----------HHH-----------HHHHHHH
Confidence 35799999999999999999999986 89999987642100 000 000 0124566
Q ss_pred HHHCCCeEEeCCcEEEEeCCCc---EEEe-----CCCcEEEeccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQ---TLIT-----NSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~---~v~~-----~~g~~i~yd~lVlAtG~~~~ 175 (488)
+++.|++++.+++|.+++.+.. .+++ .+++++.+|.+|+|+|..|.
T Consensus 230 l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~ 283 (474)
T 1zmd_A 230 LQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPF 283 (474)
T ss_dssp HHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEEC
T ss_pred HHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcC
Confidence 7889999999999999987552 3442 45678999999999998765
No 228
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=98.15 E-value=1.2e-05 Score=78.81 Aligned_cols=62 Identities=16% Similarity=0.310 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcC
Q 011351 251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 316 (488)
Q Consensus 251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~g 316 (488)
+...+.+.+++.|++++.+++|++++.. ++.+ .|.+.+| ++.+|.||+|+|.... .++...+
T Consensus 166 ~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~-~v~~~~g-~~~a~~vV~A~G~~s~-~l~~~~~ 227 (382)
T 1ryi_A 166 VCKAYVKAAKMLGAEIFEHTPVLHVERD-GEAL-FIKTPSG-DVWANHVVVASGVWSG-MFFKQLG 227 (382)
T ss_dssp HHHHHHHHHHHTTCEEETTCCCCEEECS-SSSE-EEEETTE-EEEEEEEEECCGGGTH-HHHHHTT
T ss_pred HHHHHHHHHHHCCCEEEcCCcEEEEEEE-CCEE-EEEcCCc-eEEcCEEEECCChhHH-HHHHhcC
Confidence 5566777788899999999999999864 4455 6777777 7999999999998753 4555544
No 229
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=98.15 E-value=2e-06 Score=86.94 Aligned_cols=98 Identities=20% Similarity=0.272 Sum_probs=72.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++++|||||+.|+.+|..|++.|. +|+|+++.+... |.+. ..+ .....+.
T Consensus 170 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~~-----------~~~-----------~~~l~~~ 221 (464)
T 2a8x_A 170 LPKSIIIAGAGAIGMEFGYVLKNYGV---DVTIVEFLPRAL---PNED-----------ADV-----------SKEIEKQ 221 (464)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSC-----------HHH-----------HHHHHHH
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEcCCccc---cccC-----------HHH-----------HHHHHHH
Confidence 35799999999999999999999986 899999875421 0000 000 0123566
Q ss_pred HHHCCCeEEeCCcEEEEeCCCc--EEEeC-CC--cEEEeccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITN-SG--KLLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~-~g--~~i~yd~lVlAtG~~~~ 175 (488)
+++.|++++.++.|.+++.+.. .+.+. +| +++.+|.+|+|+|..|.
T Consensus 222 l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~ 272 (464)
T 2a8x_A 222 FKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPN 272 (464)
T ss_dssp HHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEEC
T ss_pred HHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCcc
Confidence 7788999999999999986543 44543 56 57999999999998765
No 230
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=98.14 E-value=3.1e-05 Score=79.76 Aligned_cols=99 Identities=14% Similarity=0.181 Sum_probs=75.2
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc--------cc------------ccC----------------HHH
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------QR------------LFT----------------PSL 251 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l--------~~------------~~~----------------~~~ 251 (488)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+- +. .+. +++
T Consensus 17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i 96 (542)
T 1w4x_A 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI 96 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHH
Confidence 369999999999999999999999999999875321 00 001 234
Q ss_pred HHHHHHHHHHcC--cEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351 252 AQRYEQLYQQNG--VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 306 (488)
Q Consensus 252 ~~~~~~~l~~~G--V~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~ 306 (488)
.+++....++.+ ++++++++|++++.+++.....|.+.+|+++.+|.||+|+|..
T Consensus 97 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~ 153 (542)
T 1w4x_A 97 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQL 153 (542)
T ss_dssp HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSC
T ss_pred HHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCC
Confidence 555666566655 6789999999998654433446888899899999999999963
No 231
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=98.14 E-value=4e-06 Score=85.56 Aligned_cols=99 Identities=14% Similarity=0.259 Sum_probs=75.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++++|||||+.|+.+|..|++.|. +|+++++.+... +.+. ..+ .....+.
T Consensus 181 ~~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d-----------~~~-----------~~~l~~~ 232 (499)
T 1xdi_A 181 LPDHLIVVGSGVTGAEFVDAYTELGV---PVTVVASQDHVL---PYED-----------ADA-----------ALVLEES 232 (499)
T ss_dssp CCSSEEEESCSHHHHHHHHHHHHTTC---CEEEECSSSSSS---CCSS-----------HHH-----------HHHHHHH
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCccc---cccC-----------HHH-----------HHHHHHH
Confidence 35799999999999999999999876 899999875421 0000 000 1224566
Q ss_pred HHHCCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCCCCCc
Q 011351 130 YKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASR 176 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~~~~~ 176 (488)
+++.|+++++++.|.+++.+. -.+.+.+|+++.+|.+|+|+|..|..
T Consensus 233 l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~ 281 (499)
T 1xdi_A 233 FAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNT 281 (499)
T ss_dssp HHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECC
T ss_pred HHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence 788999999999999998765 35666788889999999999987753
No 232
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=98.14 E-value=1.5e-06 Score=91.38 Aligned_cols=37 Identities=27% Similarity=0.393 Sum_probs=33.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHH-cCCCCCcEEEEcCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVE-HGMADGRLCIVSKEAYA 89 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~-~g~~~~~V~lie~~~~~ 89 (488)
.+++|+|||||++|+++|..|++ .|. +|+|||+.+..
T Consensus 31 ~~~dVlIVGaGpaGL~~A~~La~~~G~---~V~viEr~~~~ 68 (639)
T 2dkh_A 31 SQVDVLIVGCGPAGLTLAAQLAAFPDI---RTCIVEQKEGP 68 (639)
T ss_dssp SEEEEEEECCSHHHHHHHHHHTTCTTS---CEEEECSSSSC
T ss_pred CCCcEEEECcCHHHHHHHHHHHHhCCC---CEEEEeCCCCC
Confidence 35799999999999999999999 887 89999998653
No 233
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=98.13 E-value=3.4e-06 Score=85.85 Aligned_cols=99 Identities=17% Similarity=0.297 Sum_probs=73.6
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (488)
...++|+|||||+.|+.+|..|++.|. +|+|+++.+... .. .+ ...+ .....+
T Consensus 192 ~~~~~vvVIGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l------~~-~~------~~~~-----------~~~l~~ 244 (490)
T 2bc0_A 192 KDIKRVAVVGAGYIGVELAEAFQRKGK---EVVLIDVVDTCL------AG-YY------DRDL-----------TDLMAK 244 (490)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSTT------TT-TS------CHHH-----------HHHHHH
T ss_pred cCCceEEEECCCHHHHHHHHHHHHCCC---eEEEEEcccchh------hh-HH------HHHH-----------HHHHHH
Confidence 346799999999999999999999986 899999876421 00 00 0000 012345
Q ss_pred HHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351 129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
.+++.|++++.+++|.+++.+++ .+.+ +|+++.+|.+|+|+|..|.
T Consensus 245 ~l~~~GV~i~~~~~v~~i~~~~~v~~v~~-~g~~i~~D~Vi~a~G~~p~ 292 (490)
T 2bc0_A 245 NMEEHGIQLAFGETVKEVAGNGKVEKIIT-DKNEYDVDMVILAVGFRPN 292 (490)
T ss_dssp HHHTTTCEEEETCCEEEEECSSSCCEEEE-SSCEEECSEEEECCCEEEC
T ss_pred HHHhCCeEEEeCCEEEEEEcCCcEEEEEE-CCcEEECCEEEECCCCCcC
Confidence 67788999999999999987543 3555 6778999999999998765
No 234
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=98.12 E-value=1.2e-05 Score=76.39 Aligned_cols=100 Identities=14% Similarity=0.161 Sum_probs=74.9
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc----C----c------------ccccCHHHHHHHHHHHHHcCcEEE
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH----L----L------------QRLFTPSLAQRYEQLYQQNGVKFV 267 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~----~----l------------~~~~~~~~~~~~~~~l~~~GV~v~ 267 (488)
..|+|||+|+.|+.+|..++++|.+|+++++... + . .....+++...+.+.+++.++++.
T Consensus 5 yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~~ 84 (314)
T 4a5l_A 5 HDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTII 84 (314)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcEEE
Confidence 3589999999999999999999999999987531 0 0 001124677778888899999988
Q ss_pred cCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh
Q 011351 268 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 310 (488)
Q Consensus 268 ~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~ 310 (488)
... +.......+. ..+.+.++.++.+|.+|+|||.+|...
T Consensus 85 ~~~-v~~~~~~~~~--~~~~~~~~~~~~~~~liiATG~~~~~~ 124 (314)
T 4a5l_A 85 TET-IDHVDFSTQP--FKLFTEEGKEVLTKSVIIATGATAKRM 124 (314)
T ss_dssp CCC-EEEEECSSSS--EEEEETTCCEEEEEEEEECCCEEECCC
T ss_pred EeE-EEEeecCCCc--eEEEECCCeEEEEeEEEEccccccccc
Confidence 764 5555433222 356778889999999999999987643
No 235
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=98.12 E-value=3e-06 Score=88.26 Aligned_cols=35 Identities=31% Similarity=0.317 Sum_probs=32.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
..+||||||||+||++||..|++.|. +|+|||+..
T Consensus 17 ~~~DVvVVG~G~AGl~AAl~aa~~G~---~V~vlEK~~ 51 (621)
T 2h88_A 17 HEFDAVVVGAGGAGLRAAFGLSEAGF---NTACVTKLF 51 (621)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSC
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCC---cEEEEeccC
Confidence 35799999999999999999999987 899999975
No 236
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=98.11 E-value=3.2e-06 Score=85.59 Aligned_cols=98 Identities=15% Similarity=0.237 Sum_probs=72.2
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++++|||||+.|+.+|..|++.|. +|+++++.+... +.+. ..+ .....+.
T Consensus 173 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d-----------~~~-----------~~~l~~~ 224 (468)
T 2qae_A 173 VPKTMVVIGGGVIGLELGSVWARLGA---EVTVVEFAPRCA---PTLD-----------EDV-----------TNALVGA 224 (468)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSC-----------HHH-----------HHHHHHH
T ss_pred CCceEEEECCCHHHHHHHHHHHHhCC---EEEEEecCCccc---ccCC-----------HHH-----------HHHHHHH
Confidence 45799999999999999999999886 899999875421 0000 000 1224566
Q ss_pred H-HHCCCeEEeCCcEEEEeCCC--cEEEeC--CC--cEEEeccEEeccCCCCC
Q 011351 130 Y-KEKGIEMIYQDPVTSIDIEK--QTLITN--SG--KLLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~-~~~~i~~~~~~~v~~id~~~--~~v~~~--~g--~~i~yd~lVlAtG~~~~ 175 (488)
+ ++.|++++.+++|.+++.+. ..+.+. +| +++.+|.+|+|+|..|.
T Consensus 225 l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~ 277 (468)
T 2qae_A 225 LAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPF 277 (468)
T ss_dssp HHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEEC
T ss_pred HhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccC
Confidence 7 88999999999999998754 345554 66 57999999999998765
No 237
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=98.10 E-value=2.1e-05 Score=81.33 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=76.2
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc-Cc-----------------------cc------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LL-----------------------QR------------------ 245 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~-~l-----------------------~~------------------ 245 (488)
-.|+|||+|..|+++|..+++.|.+|.++++.+. +. ..
T Consensus 29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~~ 108 (651)
T 3ces_A 29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNA 108 (651)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEEST
T ss_pred CCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhhc
Confidence 4699999999999999999999999999997631 10 00
Q ss_pred -----------ccC-HHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 246 -----------LFT-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 246 -----------~~~-~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
..+ ..+...+.+.+++ .|++++ +..|+.+..+ ++.+.+|.+.+|.++.||.||+|+|..+.
T Consensus 109 ~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e-~g~V~GV~t~dG~~I~Ad~VVLATGt~s~ 182 (651)
T 3ces_A 109 SKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVE-NDRVVGAVTQMGLKFRAKAVVLTVGTFLD 182 (651)
T ss_dssp TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEES-SSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred ccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEec-CCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence 001 1345566677777 699995 5689999754 56777889999988999999999998654
No 238
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=98.10 E-value=3e-06 Score=87.52 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=32.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 89 (488)
+++|+|||||++|+++|..|++.|. +|+|||+.+..
T Consensus 26 ~~dVlIVGaGpaGl~~A~~La~~G~---~V~vlEr~~~~ 61 (549)
T 2r0c_A 26 ETDVLILGGGPVGMALALDLAHRQV---GHLVVEQTDGT 61 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSCSC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC---CEEEEeCCCCC
Confidence 4799999999999999999999987 89999998653
No 239
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=98.10 E-value=4.8e-06 Score=85.31 Aligned_cols=45 Identities=11% Similarity=0.139 Sum_probs=35.7
Q ss_pred HHHCCCeEEeCCcEEEEeCC--C--cEEEeCCCcEEEeccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDIE--K--QTLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~--~--~~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
+.+.|++++.+ +|+++..+ . ..|++.+|+++.+|.||.|+|....
T Consensus 183 a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~ 231 (511)
T 2weu_A 183 AIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGL 231 (511)
T ss_dssp HHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCC
T ss_pred HHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchH
Confidence 34579999998 99999763 2 2467788888999999999998654
No 240
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=98.10 E-value=6.4e-06 Score=83.23 Aligned_cols=102 Identities=14% Similarity=0.155 Sum_probs=75.3
Q ss_pred eEEEECCCHHHHHHHHHHHhCC-----CcEEEEecCCcCccc--------------------------------------
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWK-----LDTTIIFPENHLLQR-------------------------------------- 245 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g-----~~v~lv~~~~~~l~~-------------------------------------- 245 (488)
.|+|||+|+.|+.+|..|++.| .+|+++++.+.+--.
T Consensus 32 dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~~~ 111 (463)
T 3s5w_A 32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHKHD 111 (463)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHHTT
T ss_pred CEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhhcC
Confidence 6999999999999999999999 899999987632100
Q ss_pred ----------c--cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCC-CcE--EEEEeCCCc----EEEcCEEEEeecCc
Q 011351 246 ----------L--FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD-GRV--AAVKLEDGS----TIDADTIVIGIGAK 306 (488)
Q Consensus 246 ----------~--~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~-~~v--~~v~l~~g~----~i~~D~vi~a~G~~ 306 (488)
. ...++.+++....++.+++++++++|++++..++ +.. ..|.+.+|+ ++.+|.||+|+|..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~~ 191 (463)
T 3s5w_A 112 RLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGT 191 (463)
T ss_dssp CHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCCE
T ss_pred ceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCCC
Confidence 0 0123445555556667899999999999986421 222 256666665 89999999999998
Q ss_pred cCCh
Q 011351 307 PTVS 310 (488)
Q Consensus 307 p~~~ 310 (488)
|...
T Consensus 192 p~~p 195 (463)
T 3s5w_A 192 PRIP 195 (463)
T ss_dssp ECCC
T ss_pred CCCc
Confidence 8644
No 241
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=98.10 E-value=5.8e-06 Score=83.28 Aligned_cols=101 Identities=14% Similarity=0.243 Sum_probs=73.1
Q ss_pred CeEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCcCc--cc----ccCH------HHHHHHHHHHHHcCcEEEcCCeEE
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLL--QR----LFTP------SLAQRYEQLYQQNGVKFVKGASIK 273 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~--g~~v~lv~~~~~~l--~~----~~~~------~~~~~~~~~l~~~GV~v~~~~~v~ 273 (488)
++++|||+|+.|+.+|..|++. +.+|+++++.+.+- +. .+.. .+.....+.+++.|++++.+++++
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~ 82 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV 82 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence 5899999999999999999998 88999999887542 10 0111 111113466788999999999999
Q ss_pred EEEeCCCCcEEEEE-eCCCcEEEcCEEEEeecCccCCh
Q 011351 274 NLEAGSDGRVAAVK-LEDGSTIDADTIVIGIGAKPTVS 310 (488)
Q Consensus 274 ~i~~~~~~~v~~v~-l~~g~~i~~D~vi~a~G~~p~~~ 310 (488)
.++.. ...+ .+. ..+++++.+|.+|+|||.+|...
T Consensus 83 ~id~~-~~~v-~v~~~~~~~~~~~d~lviAtG~~p~~p 118 (452)
T 3oc4_A 83 AMDVE-NQLI-AWTRKEEQQWYSYDKLILATGASQFST 118 (452)
T ss_dssp EEETT-TTEE-EEEETTEEEEEECSEEEECCCCCBCCC
T ss_pred EEECC-CCEE-EEEecCceEEEEcCEEEECCCcccCCC
Confidence 99854 3332 232 23556799999999999988653
No 242
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=98.10 E-value=2.2e-05 Score=76.96 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcC
Q 011351 253 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 316 (488)
Q Consensus 253 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~g 316 (488)
..+.+.+++.|++++.+++|++++.+ ++.+.+|.+.+| ++.+|.||+|+|.... .+++..+
T Consensus 153 ~~l~~~~~~~Gv~i~~~~~v~~i~~~-~~~v~gv~~~~g-~i~a~~VV~A~G~~s~-~l~~~~g 213 (382)
T 1y56_B 153 TAFAVKAKEYGAKLLEYTEVKGFLIE-NNEIKGVKTNKG-IIKTGIVVNATNAWAN-LINAMAG 213 (382)
T ss_dssp HHHHHHHHHTTCEEECSCCEEEEEES-SSBEEEEEETTE-EEECSEEEECCGGGHH-HHHHHHT
T ss_pred HHHHHHHHHCCCEEECCceEEEEEEE-CCEEEEEEECCc-EEECCEEEECcchhHH-HHHHHcC
Confidence 34566677889999999999999865 456656888777 7999999999998753 3444333
No 243
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=98.09 E-value=2.2e-05 Score=80.89 Aligned_cols=99 Identities=17% Similarity=0.251 Sum_probs=76.3
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc-Cc-----------------------cc------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LL-----------------------QR------------------ 245 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~-~l-----------------------~~------------------ 245 (488)
-.|+|||+|..|+++|..+++.|.+|.++++.+. +. ..
T Consensus 28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~~ 107 (637)
T 2zxi_A 28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNT 107 (637)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEEST
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeeccc
Confidence 4799999999999999999999999999997631 10 00
Q ss_pred -----------ccC-HHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 246 -----------LFT-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 246 -----------~~~-~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
..+ ..+...+.+.+++ .|++++ +..|+.+..+ ++++.+|.+.+|+++.+|.||+|+|..++
T Consensus 108 ~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e-~g~V~GV~t~dG~~i~AdaVVLATG~~s~ 181 (637)
T 2zxi_A 108 RKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVK-NNQVVGVRTNLGVEYKTKAVVVTTGTFLN 181 (637)
T ss_dssp TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEES-SSBEEEEEETTSCEEECSEEEECCTTCBT
T ss_pred ccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEec-CCEEEEEEECCCcEEEeCEEEEccCCCcc
Confidence 000 1244556667777 599995 6789998754 56777899999999999999999998654
No 244
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=98.09 E-value=6.4e-06 Score=85.17 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=33.2
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
+..+||+|||||++|+++|..|+++|. +|+|+|+++
T Consensus 16 ~~~~DVvVIGgGi~Gl~~A~~La~~G~---~V~LlEk~d 51 (561)
T 3da1_A 16 EKQLDLLVIGGGITGAGIALDAQVRGI---QTGLVEMND 51 (561)
T ss_dssp TSCEEEEEECCSHHHHHHHHHHHTTTC---CEEEEESSS
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCC---cEEEEECCC
Confidence 456899999999999999999999988 899999985
No 245
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=98.09 E-value=4.1e-06 Score=84.41 Aligned_cols=99 Identities=14% Similarity=0.296 Sum_probs=72.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++++|||||+.|+.+|..|++.|. +|+++++.+...-. .+. ..+ .....+.
T Consensus 148 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l~~--~~~-----------~~~-----------~~~l~~~ 200 (452)
T 2cdu_A 148 KAKTITIIGSGYIGAELAEAYSNQNY---NVNLIDGHERVLYK--YFD-----------KEF-----------TDILAKD 200 (452)
T ss_dssp GCSEEEEECCSHHHHHHHHHHHTTTC---EEEEEESSSSTTTT--TSC-----------HHH-----------HHHHHHH
T ss_pred cCCeEEEECcCHHHHHHHHHHHhcCC---EEEEEEcCCchhhh--hhh-----------hhH-----------HHHHHHH
Confidence 35799999999999999999999876 89999987542100 000 000 1123566
Q ss_pred HHHCCCeEEeCCcEEEEeCCCcEE--EeCCCcEEEeccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQTL--ITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~~v--~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
+++.|++++.+++|.+++.++..+ ...+|+++.+|.+|+|+|..|.
T Consensus 201 l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~~p~ 248 (452)
T 2cdu_A 201 YEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPN 248 (452)
T ss_dssp HHHTTCEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEEC
T ss_pred HHHCCCEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCCCCC
Confidence 788999999999999998633322 2347788999999999998765
No 246
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=98.08 E-value=3.3e-06 Score=91.72 Aligned_cols=37 Identities=19% Similarity=0.383 Sum_probs=32.3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
+++||+|||||++|+++|++|++.|. .+|+|||++..
T Consensus 3 ~~~dVvIIGgGi~Gls~A~~La~~G~--~~V~vlE~~~~ 39 (830)
T 1pj5_A 3 STPRIVIIGAGIVGTNLADELVTRGW--NNITVLDQGPL 39 (830)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTC--CCEEEECSSCT
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCC--CcEEEEeCCCC
Confidence 46899999999999999999999975 26999999864
No 247
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=98.08 E-value=6e-06 Score=83.95 Aligned_cols=98 Identities=20% Similarity=0.343 Sum_probs=75.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++++|||+|+.|+..|..|++.|. +|+++++.+... +.+.. .+ .....+.
T Consensus 190 ~~~~v~ViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l---~~~~~-----------~~-----------~~~l~~~ 241 (484)
T 3o0h_A 190 LPKSIVIVGGGYIGVEFANIFHGLGV---KTTLLHRGDLIL---RNFDY-----------DL-----------RQLLNDA 241 (484)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred cCCcEEEECcCHHHHHHHHHHHHcCC---eEEEEECCCccc---cccCH-----------HH-----------HHHHHHH
Confidence 45799999999999999999999876 899999876421 00000 00 0123456
Q ss_pred HHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
+++.|++++.++.|.+++.++. .+++.+|+++.+|.+|+|+|..|.
T Consensus 242 l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~ 289 (484)
T 3o0h_A 242 MVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPN 289 (484)
T ss_dssp HHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEEC
T ss_pred HHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcC
Confidence 6778999999999999987543 678888988999999999998765
No 248
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.08 E-value=2.7e-06 Score=86.22 Aligned_cols=98 Identities=15% Similarity=0.308 Sum_probs=73.2
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++++|||||+.|+.+|..|++.|. +|+|+++.+... +.+.. .+ .....+.
T Consensus 176 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l---~~~~~-----------~~-----------~~~l~~~ 227 (470)
T 1dxl_A 176 IPKKLVVIGAGYIGLEMGSVWGRIGS---EVTVVEFASEIV---PTMDA-----------EI-----------RKQFQRS 227 (470)
T ss_dssp CCSEEEESCCSHHHHHHHHHHHHHTC---EEEEECSSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCCccc---ccccH-----------HH-----------HHHHHHH
Confidence 35799999999999999999999986 899999876421 00000 00 0123566
Q ss_pred HHHCCCeEEeCCcEEEEeCCCc--EEEeC---CC--cEEEeccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITN---SG--KLLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~---~g--~~i~yd~lVlAtG~~~~ 175 (488)
+++.|++++.+++|.+++.+.. .+.+. +| +++.+|.+|+|+|..|.
T Consensus 228 l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~ 280 (470)
T 1dxl_A 228 LEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPF 280 (470)
T ss_dssp HHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEEC
T ss_pred HHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcC
Confidence 7889999999999999987653 44543 44 67999999999998775
No 249
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=98.07 E-value=1.2e-05 Score=76.34 Aligned_cols=99 Identities=15% Similarity=0.203 Sum_probs=73.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEE-EecCCcC------------ccc----ccCHHHHHHHHHHHHHcCcEEEcC
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTI-IFPENHL------------LQR----LFTPSLAQRYEQLYQQNGVKFVKG 269 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~l-v~~~~~~------------l~~----~~~~~~~~~~~~~l~~~GV~v~~~ 269 (488)
.++|+|||+|+.|+.+|..|++.|.+|++ +++. .+ .+. ....++...+.+.+++.|++++.+
T Consensus 4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~-~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 82 (315)
T 3r9u_A 4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKG-MPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMV 82 (315)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSS-STTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEECC
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC-CCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEEE
Confidence 35799999999999999999999999999 8873 21 011 012467788888888999999998
Q ss_pred CeEEEEEeCCC-CcEEEE-EeCCCcEEEcCEEEEeecCccCCh
Q 011351 270 ASIKNLEAGSD-GRVAAV-KLEDGSTIDADTIVIGIGAKPTVS 310 (488)
Q Consensus 270 ~~v~~i~~~~~-~~v~~v-~l~~g~~i~~D~vi~a~G~~p~~~ 310 (488)
++..+ .+++ +.. .+ ...++ ++.+|.+|+|+|.+|...
T Consensus 83 -~v~~i-~~~~~~~~-~v~~~~~~-~~~~d~lvlAtG~~~~~~ 121 (315)
T 3r9u_A 83 -GVEQI-LKNSDGSF-TIKLEGGK-TELAKAVIVCTGSAPKKA 121 (315)
T ss_dssp -CEEEE-EECTTSCE-EEEETTSC-EEEEEEEEECCCEEECCC
T ss_pred -EEEEE-ecCCCCcE-EEEEecCC-EEEeCEEEEeeCCCCCCC
Confidence 78888 4331 222 32 22344 899999999999987643
No 250
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=98.07 E-value=2.5e-05 Score=77.24 Aligned_cols=99 Identities=15% Similarity=0.153 Sum_probs=73.0
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc------ccCHHHH------------------------------
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------LFTPSLA------------------------------ 252 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~------~~~~~~~------------------------------ 252 (488)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .+.+...
T Consensus 3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 82 (412)
T 4hb9_A 3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFYN 82 (412)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEEC
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEec
Confidence 7999999999999999999999999999986543211 0111100
Q ss_pred -----------------------------HHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEe
Q 011351 253 -----------------------------QRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 302 (488)
Q Consensus 253 -----------------------------~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a 302 (488)
..+.+.|.+ .+..++++++++.++..+++.+ .+.++||+++.+|+||-|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~v~~~~~v~~~~~~~~~~v-~v~~~dG~~~~adlvVgA 161 (412)
T 4hb9_A 83 ERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENGGI-KIFFADGSHENVDVLVGA 161 (412)
T ss_dssp TTSCEEEC--------------CEEEEEHHHHHHHHHTTCTTTEECSCCEEEEEECTTSCE-EEEETTSCEEEESEEEEC
T ss_pred CCcceecccCCccccccccccccceEeeHHHHHHHHHhhccceEEEEEEEEeeeEcCCCeE-EEEECCCCEEEeeEEEEC
Confidence 112233322 3556889999999987666655 689999999999999999
Q ss_pred ecCccC
Q 011351 303 IGAKPT 308 (488)
Q Consensus 303 ~G~~p~ 308 (488)
-|....
T Consensus 162 DG~~S~ 167 (412)
T 4hb9_A 162 DGSNSK 167 (412)
T ss_dssp CCTTCH
T ss_pred CCCCcc
Confidence 998753
No 251
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=98.06 E-value=4.6e-06 Score=87.57 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=32.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
..+||||||||.||++||.+|++.|. +|+|||+.+.
T Consensus 4 ~~~DVvVIGgG~AGL~AAl~aae~G~---~V~vlEK~~~ 39 (660)
T 2bs2_A 4 QYCDSLVIGGGLAGLRAAVATQQKGL---STIVLSLIPV 39 (660)
T ss_dssp EECSEEEECCSHHHHHHHHHHHTTTC---CEEEECSSCG
T ss_pred ccccEEEECchHHHHHHHHHHHHCCC---cEEEEeccCC
Confidence 35799999999999999999999987 8999999763
No 252
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=98.06 E-value=5.9e-06 Score=86.68 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=32.0
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHc------CCCCCcEEEEcCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEH------GMADGRLCIVSKEAY 88 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~------g~~~~~V~lie~~~~ 88 (488)
.++||||||||+||++||.+|++. |. +|+||||...
T Consensus 21 ~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~---~V~vleK~~~ 62 (662)
T 3gyx_A 21 HSVDLLMVGGGMGNCGAAFEAVRWADKYAPEA---KILLVDKASL 62 (662)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHHHHCTTC---CEEEECSSCT
T ss_pred EEcCEEEECCCHHHHHHHHHHHhhccccCCCC---cEEEEEecCC
Confidence 357999999999999999999997 76 8999999753
No 253
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=98.05 E-value=3.9e-06 Score=85.24 Aligned_cols=97 Identities=18% Similarity=0.270 Sum_probs=72.3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++|+|||||+.|+.+|..|++.|. +|+++++.+... +.+. ..+ .....+.
T Consensus 185 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~-----------~~~-----------~~~l~~~ 236 (480)
T 3cgb_A 185 KVEDVTIIGGGAIGLEMAETFVELGK---KVRMIERNDHIG---TIYD-----------GDM-----------AEYIYKE 236 (480)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHHTTC---EEEEECCGGGTT---SSSC-----------HHH-----------HHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCC---eEEEEEeCCchh---hcCC-----------HHH-----------HHHHHHH
Confidence 46899999999999999999999886 899999875421 0000 000 1123556
Q ss_pred HHHCCCeEEeCCcEEEEeCCCcE--EEeCCCcEEEeccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~~--v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
+++.|++++.++.|.+++.+++. +.++ +.++.+|.||+|+|..|.
T Consensus 237 l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~-~~~i~~D~vi~a~G~~p~ 283 (480)
T 3cgb_A 237 ADKHHIEILTNENVKAFKGNERVEAVETD-KGTYKADLVLVSVGVKPN 283 (480)
T ss_dssp HHHTTCEEECSCCEEEEEESSBEEEEEET-TEEEECSEEEECSCEEES
T ss_pred HHHcCcEEEcCCEEEEEEcCCcEEEEEEC-CCEEEcCEEEECcCCCcC
Confidence 77899999999999999876542 4454 457999999999998765
No 254
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=98.05 E-value=9.4e-06 Score=82.20 Aligned_cols=101 Identities=21% Similarity=0.297 Sum_probs=63.9
Q ss_pred CeEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCcCc------ccccC------HHH-------HHHHHHHHHHcCcEE
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLL------QRLFT------PSL-------AQRYEQLYQQNGVKF 266 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~--g~~v~lv~~~~~~l------~~~~~------~~~-------~~~~~~~l~~~GV~v 266 (488)
++|+|||+|+.|+.+|..|++. +.+|+++++.+.+. +..+. ..+ ........++.|+++
T Consensus 4 ~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 83 (472)
T 3iwa_A 4 KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVEA 83 (472)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CEE
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcEE
Confidence 6899999999999999999988 88999999987631 11111 111 112222223579999
Q ss_pred EcCCeEEEEEeCCCCcEEEEE-eCCCc--EEEcCEEEEeecCccCCh
Q 011351 267 VKGASIKNLEAGSDGRVAAVK-LEDGS--TIDADTIVIGIGAKPTVS 310 (488)
Q Consensus 267 ~~~~~v~~i~~~~~~~v~~v~-l~~g~--~i~~D~vi~a~G~~p~~~ 310 (488)
++++++++++.. ...+ .+. +.+|+ ++.+|.+|+|||.+|...
T Consensus 84 ~~~~~V~~id~~-~~~v-~~~~~~~g~~~~~~~d~lviAtG~~p~~p 128 (472)
T 3iwa_A 84 LVETRAHAIDRA-AHTV-EIENLRTGERRTLKYDKLVLALGSKANRP 128 (472)
T ss_dssp ECSEEEEEEETT-TTEE-EEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred EECCEEEEEECC-CCEE-EEeecCCCCEEEEECCEEEEeCCCCcCCC
Confidence 999999999853 3333 233 23465 799999999999988643
No 255
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=98.05 E-value=5.9e-06 Score=85.72 Aligned_cols=98 Identities=15% Similarity=0.286 Sum_probs=73.8
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++|+|||||+.|+.+|..|++.|. +|+++++.+... +.... .+ .....+.
T Consensus 150 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~~-----------~~-----------~~~l~~~ 201 (565)
T 3ntd_A 150 NVEHATVVGGGFIGLEMMESLHHLGI---KTTLLELADQVM---TPVDR-----------EM-----------AGFAHQA 201 (565)
T ss_dssp TCSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSC---TTSCH-----------HH-----------HHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC---cEEEEEcCCccc---hhcCH-----------HH-----------HHHHHHH
Confidence 35699999999999999999999986 899999875420 00000 00 0123456
Q ss_pred HHHCCCeEEeCCcEEEEeC-------------------CCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDI-------------------EKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~-------------------~~~--~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
+++.|++++.++.|.+++. ... .+++.+|+++.+|.+|+|+|..|.
T Consensus 202 l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 268 (565)
T 3ntd_A 202 IRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPE 268 (565)
T ss_dssp HHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEEC
T ss_pred HHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccc
Confidence 7889999999999999876 222 566788889999999999998765
No 256
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=98.05 E-value=2.3e-05 Score=77.21 Aligned_cols=98 Identities=20% Similarity=0.288 Sum_probs=75.8
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc--------------------c----------------------c
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------------------R----------------------L 246 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~--------------------~----------------------~ 246 (488)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+-. . .
T Consensus 6 dVvIvG~G~aGl~~A~~La~~G~~V~l~E~~~~~g~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (397)
T 3cgv_A 6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRPII 85 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSCEE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCcccccccCHHHHHHcCCCCChHHhhhhcceEEEEcCCCCEEEE
Confidence 699999999999999999999999999998742100 0 0
Q ss_pred cC--------------HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCcEEEcCEEEEeecCcc
Q 011351 247 FT--------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTIVIGIGAKP 307 (488)
Q Consensus 247 ~~--------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~~i~~D~vi~a~G~~p 307 (488)
++ ..+...+.+.+++.|++++.+++|++++.+ ++.+.+|.+ .+++++.+|.||.|+|...
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~a~~vV~A~G~~s 162 (397)
T 3cgv_A 86 LQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKE-NGKVAGAKIRHNNEIVDVRAKMVIAADGFES 162 (397)
T ss_dssp EC-----CCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEE-TTEEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred EeccccCCceeEEEeHHHHHHHHHHHHHhCCCEEEECCEEEEEEEe-CCEEEEEEEEECCeEEEEEcCEEEECCCcch
Confidence 00 124456677777889999999999999865 566655666 3566899999999999876
No 257
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=98.05 E-value=2.4e-05 Score=78.80 Aligned_cols=100 Identities=20% Similarity=0.210 Sum_probs=77.3
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc------c------------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------R------------------------------------ 245 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~------~------------------------------------ 245 (488)
..|+|||+|+.|+-+|..|++.|.+|+++++.+.+.. .
T Consensus 7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (453)
T 3atr_A 7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQT 86 (453)
T ss_dssp CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCce
Confidence 4699999999999999999999999999998753210 0
Q ss_pred ---------ccC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEeecCccC
Q 011351 246 ---------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAKPT 308 (488)
Q Consensus 246 ---------~~~-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~---~g~--~i~~D~vi~a~G~~p~ 308 (488)
.++ ..+.+.+.+.+++.|++++++++|+++..+ ++.+.+|.+. +|+ ++.+|.||.|+|....
T Consensus 87 ~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~ 163 (453)
T 3atr_A 87 VWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFE-DGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRS 163 (453)
T ss_dssp EEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEE-TTEEEEEEEEETTTTEEEEEECSEEEECCGGGCT
T ss_pred EEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCceEEEEcCEEEECcCCchh
Confidence 000 235566777777889999999999999864 4555555554 676 7999999999998765
No 258
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=98.04 E-value=4.6e-05 Score=79.11 Aligned_cols=101 Identities=20% Similarity=0.282 Sum_probs=79.0
Q ss_pred CeEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCcCccc------------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGW------KLDTTIIFPENHLLQR------------------------------------ 245 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~------g~~v~lv~~~~~~l~~------------------------------------ 245 (488)
-.|+|||+|+.|+-+|..|++. |.+|+++++.+.+-..
T Consensus 36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~~ 115 (584)
T 2gmh_A 36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG 115 (584)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhee
Confidence 4699999999999999999998 9999999976432100
Q ss_pred --------cc---C--------------HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC------CC---
Q 011351 246 --------LF---T--------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE------DG--- 291 (488)
Q Consensus 246 --------~~---~--------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~------~g--- 291 (488)
.+ + ..+.+.+.+.+++.||++++++.++++..++++.+.+|.+. +|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~ 195 (584)
T 2gmh_A 116 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK 195 (584)
T ss_dssp EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEE
T ss_pred eeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcc
Confidence 00 0 13456677778888999999999999987666777677776 33
Q ss_pred ------cEEEcCEEEEeecCccC
Q 011351 292 ------STIDADTIVIGIGAKPT 308 (488)
Q Consensus 292 ------~~i~~D~vi~a~G~~p~ 308 (488)
.++.+|.||.|.|....
T Consensus 196 ~~~~~g~~i~Ad~VV~AdG~~S~ 218 (584)
T 2gmh_A 196 TTFERGLELHAKVTIFAEGCHGH 218 (584)
T ss_dssp EEEECCCEEECSEEEECCCTTCH
T ss_pred cccCCceEEECCEEEEeeCCCch
Confidence 67999999999999864
No 259
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=98.02 E-value=6.1e-06 Score=84.03 Aligned_cols=97 Identities=14% Similarity=0.173 Sum_probs=70.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++++|||||+.|+.+|..|++.|. +|+++++.+... +.... .+ .....+.
T Consensus 173 ~~k~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d~-----------~~-----------~~~l~~~ 224 (492)
T 3ic9_A 173 LPKSVAVFGPGVIGLELGQALSRLGV---IVKVFGRSGSVA---NLQDE-----------EM-----------KRYAEKT 224 (492)
T ss_dssp CCSEEEEESSCHHHHHHHHHHHHTTC---EEEEECCTTCCT---TCCCH-----------HH-----------HHHHHHH
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEECCccc---ccCCH-----------HH-----------HHHHHHH
Confidence 46799999999999999999999986 899999876521 10000 00 0122344
Q ss_pred HHHCCCeEEeCCcEEEEeCCCc--EEEeC--CC--cEEEeccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITN--SG--KLLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~--~g--~~i~yd~lVlAtG~~~~ 175 (488)
+++. ++++.++.|..+..++. .+++. +| +++.+|.+|+|+|..|.
T Consensus 225 l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~ 275 (492)
T 3ic9_A 225 FNEE-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKAN 275 (492)
T ss_dssp HHTT-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEES
T ss_pred HhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccC
Confidence 5556 99999999999976543 45553 67 67999999999998775
No 260
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=98.01 E-value=6.6e-06 Score=83.21 Aligned_cols=96 Identities=18% Similarity=0.269 Sum_probs=72.8
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++++|||||+.|+.+|..|++.|. +|+++++.+... | ... .+ .....+.
T Consensus 175 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~-~~~-----------~~-----------~~~l~~~ 225 (467)
T 1zk7_A 175 IPERLAVIGSSVVALELAQAFARLGS---KVTVLARNTLFF---R-EDP-----------AI-----------GEAVTAA 225 (467)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCTTT---T-SCH-----------HH-----------HHHHHHH
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcCC---EEEEEEECCccC---C-CCH-----------HH-----------HHHHHHH
Confidence 35799999999999999999999986 899999875420 0 100 00 1234566
Q ss_pred HHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
+++.|++++.+++|.+++.++. .+.++ +.++.+|.+|+|+|..|.
T Consensus 226 l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~ 272 (467)
T 1zk7_A 226 FRAEGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPN 272 (467)
T ss_dssp HHHTTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEES
T ss_pred HHhCCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcC
Confidence 7889999999999999986554 35555 557999999999998765
No 261
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=98.01 E-value=3.9e-05 Score=72.95 Aligned_cols=98 Identities=19% Similarity=0.230 Sum_probs=73.4
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc---Cc--------c---cccCHHHHHHHHHHHHHcCcEEEcCCeEEE
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---LL--------Q---RLFTPSLAQRYEQLYQQNGVKFVKGASIKN 274 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~---~l--------~---~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~ 274 (488)
.|+|||+|+.|+.+|..|+++|.+|+++++... ++ + ....+++.........+.+..+..+.....
T Consensus 8 DvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (312)
T 4gcm_A 8 DIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSV 87 (312)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCCEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceeeeee
Confidence 589999999999999999999999999987521 11 0 011245666777777888888888876666
Q ss_pred EEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh
Q 011351 275 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 310 (488)
Q Consensus 275 i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~ 310 (488)
.... .. .+...+++++.+|.+|+|||.+|...
T Consensus 88 ~~~~-~~---~~~~~~~~~~~~d~liiAtGs~~~~~ 119 (312)
T 4gcm_A 88 EDKG-EY---KVINFGNKELTAKAVIIATGAEYKKI 119 (312)
T ss_dssp EECS-SC---EEEECSSCEEEEEEEEECCCEEECCC
T ss_pred eeee-cc---eeeccCCeEEEeceeEEcccCccCcC
Confidence 5532 22 34567788999999999999988643
No 262
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=98.00 E-value=3.3e-05 Score=79.87 Aligned_cols=101 Identities=18% Similarity=0.303 Sum_probs=76.2
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc-Cc-----------------------cc----------------
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LL-----------------------QR---------------- 245 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~-~l-----------------------~~---------------- 245 (488)
..-.|+|||+|..|+++|..+++.|.+|+++++.+. +- ..
T Consensus 20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l 99 (641)
T 3cp8_A 20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRML 99 (641)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEE
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhc
Confidence 345799999999999999999999999999997631 10 00
Q ss_pred -------------ccCH-HHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 246 -------------LFTP-SLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 246 -------------~~~~-~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
..+. .+...+.+.+++ .|++++.+ .++.+..+ ++.+.+|.+.+|+++.+|.||+|+|..++
T Consensus 100 ~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~-~V~~L~~d-~g~V~GV~t~~G~~i~Ad~VVLATG~~s~ 175 (641)
T 3cp8_A 100 NRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQD-TVIGVSAN-SGKFSSVTVRSGRAIQAKAAILACGTFLN 175 (641)
T ss_dssp CSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEEC-CEEEEEEE-TTEEEEEEETTSCEEEEEEEEECCTTCBT
T ss_pred ccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEee-EEEEEEec-CCEEEEEEECCCcEEEeCEEEECcCCCCC
Confidence 0111 345566667777 49999654 78888753 56677788999999999999999998754
No 263
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=97.99 E-value=4e-05 Score=79.50 Aligned_cols=100 Identities=16% Similarity=0.223 Sum_probs=77.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc-----------------------------------------
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------------- 245 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~----------------------------------------- 245 (488)
...|+|||||+.|+-+|..|++.|.+|+++++.+..-..
T Consensus 23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 102 (591)
T 3i3l_A 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQDQ 102 (591)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCCC
Confidence 468999999999999999999999999999986211000
Q ss_pred ---------------------ccC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-CC--cEEEcCEEE
Q 011351 246 ---------------------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DG--STIDADTIV 300 (488)
Q Consensus 246 ---------------------~~~-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~-~g--~~i~~D~vi 300 (488)
.++ ..+...+.+.+++.|++++.+++|+++... ++.+..|.+. +| +++.+|.||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~-~g~~~~V~~~~~G~~~~i~AdlVV 181 (591)
T 3i3l_A 103 APWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLS-DPDRVVLTVRRGGESVTVESDFVI 181 (591)
T ss_dssp CCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECC-STTCEEEEEEETTEEEEEEESEEE
T ss_pred ccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCCEEEEEEecCCceEEEEcCEEE
Confidence 001 235566777788899999999999999854 3444567776 67 579999999
Q ss_pred EeecCcc
Q 011351 301 IGIGAKP 307 (488)
Q Consensus 301 ~a~G~~p 307 (488)
.|+|...
T Consensus 182 ~AdG~~S 188 (591)
T 3i3l_A 182 DAGGSGG 188 (591)
T ss_dssp ECCGGGC
T ss_pred ECCCCcc
Confidence 9999865
No 264
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=97.99 E-value=1.1e-05 Score=76.72 Aligned_cols=37 Identities=22% Similarity=0.469 Sum_probs=32.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHc--CCCCCcEEEEcCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAYA 89 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~--g~~~~~V~lie~~~~~ 89 (488)
..+||+|||||++|+++|..|++. |. +|+|+|+.+..
T Consensus 64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~---~V~v~e~~~~~ 102 (326)
T 2gjc_A 64 AVSDVIIVGAGSSGLSAAYVIAKNRPDL---KVCIIESSVAP 102 (326)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTS---CEEEECSSSSC
T ss_pred CcCCEEEECccHHHHHHHHHHHhcCCCC---eEEEEecCccc
Confidence 346999999999999999999998 65 89999998754
No 265
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=97.98 E-value=8.7e-06 Score=82.23 Aligned_cols=97 Identities=19% Similarity=0.300 Sum_probs=74.2
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++++|||||+.|+..|..|++.|. +|+++++.+... +.+.. .+ .....+.
T Consensus 169 ~~~~v~ViGgG~~g~e~A~~l~~~g~---~Vt~v~~~~~~l---~~~~~-----------~~-----------~~~l~~~ 220 (463)
T 4dna_A 169 LPESILIAGGGYIAVEFANIFHGLGV---KTTLIYRGKEIL---SRFDQ-----------DM-----------RRGLHAA 220 (463)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCccc---cccCH-----------HH-----------HHHHHHH
Confidence 46799999999999999999999876 899999876421 00000 00 1223456
Q ss_pred HHHCCCeEEeCCcEEEEeCCC-c--EEE-eCCCcEEEeccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDIEK-Q--TLI-TNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~-~--~v~-~~~g~~i~yd~lVlAtG~~~~ 175 (488)
+++.|++++.++.|.+++.+. . .|+ +.+|+ +.+|.+|+|+|..|.
T Consensus 221 l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~ 269 (463)
T 4dna_A 221 MEEKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPN 269 (463)
T ss_dssp HHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEES
T ss_pred HHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccC
Confidence 788999999999999998753 2 677 78888 999999999998765
No 266
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=97.98 E-value=5.2e-05 Score=77.51 Aligned_cols=100 Identities=18% Similarity=0.206 Sum_probs=75.9
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc--------Cccc----------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH--------LLQR---------------------------------- 245 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~--------~l~~---------------------------------- 245 (488)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+. +.+.
T Consensus 8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 87 (512)
T 3e1t_A 8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGKEP 87 (512)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSSCS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecCCc
Confidence 4799999999999999999999999999998741 0000
Q ss_pred -------------------ccC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEE--eCCCc--EEEcCEEEE
Q 011351 246 -------------------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK--LEDGS--TIDADTIVI 301 (488)
Q Consensus 246 -------------------~~~-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~--l~~g~--~i~~D~vi~ 301 (488)
.++ ..+...+.+.+++.|++++.+++|+++... ++.+.+|. ..+|+ ++.+|.||.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~-~~~v~gv~~~~~dG~~~~i~ad~VI~ 166 (512)
T 3e1t_A 88 EPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFE-GERAVGVRYRNTEGVELMAHARFIVD 166 (512)
T ss_dssp SCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEE-TTEEEEEEEECSSSCEEEEEEEEEEE
T ss_pred cccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEE-CCEEEEEEEEeCCCCEEEEEcCEEEE
Confidence 000 234556677778899999999999999864 55554444 45674 799999999
Q ss_pred eecCccC
Q 011351 302 GIGAKPT 308 (488)
Q Consensus 302 a~G~~p~ 308 (488)
|+|....
T Consensus 167 AdG~~S~ 173 (512)
T 3e1t_A 167 ASGNRTR 173 (512)
T ss_dssp CCCTTCS
T ss_pred CCCcchH
Confidence 9998753
No 267
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=97.98 E-value=8.5e-06 Score=82.63 Aligned_cols=100 Identities=16% Similarity=0.288 Sum_probs=73.8
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (488)
...++++|||||+.|+.+|..|++.|. +|+++++.+... +... ..+ .....+
T Consensus 178 ~~~~~v~ViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~-----------~~~-----------~~~l~~ 229 (476)
T 3lad_A 178 NVPGKLGVIGAGVIGLELGSVWARLGA---EVTVLEAMDKFL---PAVD-----------EQV-----------AKEAQK 229 (476)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSS---TTSC-----------HHH-----------HHHHHH
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCcC---cccC-----------HHH-----------HHHHHH
Confidence 345799999999999999999999876 899999876421 0000 000 122355
Q ss_pred HHHHCCCeEEeCCcEEEEeCCCc--EEEeCCC---cEEEeccEEeccCCCCCc
Q 011351 129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSG---KLLKYGSLIVATGCTASR 176 (488)
Q Consensus 129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g---~~i~yd~lVlAtG~~~~~ 176 (488)
.+++.|++++.++.|.+++.+.. .+++.++ +++.+|.+|+|+|..|..
T Consensus 230 ~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~ 282 (476)
T 3lad_A 230 ILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVT 282 (476)
T ss_dssp HHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECC
T ss_pred HHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccC
Confidence 67788999999999999986543 4556554 579999999999987653
No 268
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=97.97 E-value=5.8e-05 Score=73.64 Aligned_cols=54 Identities=17% Similarity=0.294 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351 251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 307 (488)
Q Consensus 251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p 307 (488)
+...+.+.+++.|++++.+++|++++.+++ .+ .+.+.+|+ +.+|.||+|+|...
T Consensus 151 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~-~~-~v~~~~g~-~~a~~vV~a~G~~s 204 (372)
T 2uzz_A 151 AIKTWIQLAKEAGCAQLFNCPVTAIRHDDD-GV-TIETADGE-YQAKKAIVCAGTWV 204 (372)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEECSS-SE-EEEESSCE-EEEEEEEECCGGGG
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEEcCC-EE-EEEECCCe-EEcCEEEEcCCccH
Confidence 344556667788999999999999986543 33 57777775 99999999999764
No 269
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=97.97 E-value=4.2e-05 Score=73.84 Aligned_cols=95 Identities=18% Similarity=0.198 Sum_probs=69.3
Q ss_pred eEEEECCCHHHHHHHHHHHh---CCCcEEEEecCCcCcccc----------------------cCH---HH---------
Q 011351 209 KVVVVGGGYIGMEVAAAAVG---WKLDTTIIFPENHLLQRL----------------------FTP---SL--------- 251 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~---~g~~v~lv~~~~~~l~~~----------------------~~~---~~--------- 251 (488)
+|+|||+|..|+-+|..|++ .|.+|+++++.+.+-.+. .++ .+
T Consensus 3 dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~ 82 (342)
T 3qj4_A 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELLA 82 (342)
T ss_dssp EEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHHH
T ss_pred cEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHHh
Confidence 69999999999999999999 899999999764321100 000 11
Q ss_pred -----------------------------HHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEe
Q 011351 252 -----------------------------AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 302 (488)
Q Consensus 252 -----------------------------~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a 302 (488)
...++...++.|++++++++|++++..++ .+ .|.+.+|+++.+|.||+|
T Consensus 83 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~-~~-~v~~~~g~~~~ad~vV~A 160 (342)
T 3qj4_A 83 YGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDD-KW-EVSKQTGSPEQFDLIVLT 160 (342)
T ss_dssp TTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSS-SE-EEEESSSCCEEESEEEEC
T ss_pred CCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCC-EE-EEEECCCCEEEcCEEEEC
Confidence 11222333444899999999999987544 34 578888888999999999
Q ss_pred ecC
Q 011351 303 IGA 305 (488)
Q Consensus 303 ~G~ 305 (488)
++.
T Consensus 161 ~p~ 163 (342)
T 3qj4_A 161 MPV 163 (342)
T ss_dssp SCH
T ss_pred CCH
Confidence 874
No 270
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=97.95 E-value=8.1e-06 Score=83.11 Aligned_cols=99 Identities=17% Similarity=0.249 Sum_probs=72.5
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (488)
...++|+|||||+.|+.+|..|++.|. +|+++++.+... +... ..+ .....+
T Consensus 196 ~~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d-----------~~~-----------~~~l~~ 247 (491)
T 3urh_A 196 KVPASMIVVGGGVIGLELGSVWARLGA---KVTVVEFLDTIL---GGMD-----------GEV-----------AKQLQR 247 (491)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHHTC---EEEEECSSSSSS---SSSC-----------HHH-----------HHHHHH
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCC---EEEEEecccccc---ccCC-----------HHH-----------HHHHHH
Confidence 345799999999999999999999986 899999776421 0000 000 112355
Q ss_pred HHHHCCCeEEeCCcEEEEeCCCc--EEEeCC---C--cEEEeccEEeccCCCCC
Q 011351 129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNS---G--KLLKYGSLIVATGCTAS 175 (488)
Q Consensus 129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~~---g--~~i~yd~lVlAtG~~~~ 175 (488)
.+++.|++++.+++|.++..+.. .+.+.+ | +++.+|.+|+|+|..|.
T Consensus 248 ~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~ 301 (491)
T 3urh_A 248 MLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPS 301 (491)
T ss_dssp HHHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEEC
T ss_pred HHHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccC
Confidence 67788999999989999876553 344442 4 57999999999998765
No 271
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=97.94 E-value=1.4e-05 Score=81.39 Aligned_cols=101 Identities=18% Similarity=0.258 Sum_probs=72.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCC-CCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMA-DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~-~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
.++|+|||||+.|+.+|..|++.+.. ..+|+++++.+.. ..+ .+ + ..+ .....+.
T Consensus 180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~-~~~------~l-~-----~~~-----------~~~~~~~ 235 (493)
T 1m6i_A 180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN-MGK------IL-P-----EYL-----------SNWTMEK 235 (493)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST-TTT------TS-C-----HHH-----------HHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccc-ccc------cC-C-----HHH-----------HHHHHHH
Confidence 57999999999999999999874210 2389999876431 000 00 0 000 0123456
Q ss_pred HHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
+++.|++++.++.|.+++.++. .+++.+|+++.+|.+|+|+|..|.
T Consensus 236 l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn 283 (493)
T 1m6i_A 236 VRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPN 283 (493)
T ss_dssp HHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEEC
T ss_pred HHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCcc
Confidence 7788999999999999976443 577889999999999999998765
No 272
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=97.93 E-value=7.3e-06 Score=82.38 Aligned_cols=90 Identities=14% Similarity=0.194 Sum_probs=70.0
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC-------ccc-ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-------LQR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~-------l~~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 277 (488)
..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+ ++. .++.++.....+.+++.||++++++.+.
T Consensus 121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~---- 196 (456)
T 2vdc_G 121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVG---- 196 (456)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBT----
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCcEEEeCCEec----
Confidence 3578999999999999999999999999999998764 121 1355677777888999999999997652
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351 278 GSDGRVAAVKLEDGSTIDADTIVIGIGAK 306 (488)
Q Consensus 278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~ 306 (488)
. .+.++++ .+.+|.||+|+|..
T Consensus 197 ---~---~v~~~~~-~~~~d~vvlAtG~~ 218 (456)
T 2vdc_G 197 ---R---DASLPEL-RRKHVAVLVATGVY 218 (456)
T ss_dssp ---T---TBCHHHH-HSSCSEEEECCCCC
T ss_pred ---c---EEEhhHh-HhhCCEEEEecCCC
Confidence 0 1223333 26799999999986
No 273
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=97.93 E-value=5.2e-05 Score=75.08 Aligned_cols=100 Identities=20% Similarity=0.301 Sum_probs=74.4
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc----------------------------------------
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR---------------------------------------- 245 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~---------------------------------------- 245 (488)
+..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 101 (407)
T 3rp8_A 22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRS 101 (407)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCC
Confidence 3468999999999999999999999999999987532100
Q ss_pred -----ccC-----------------HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEee
Q 011351 246 -----LFT-----------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI 303 (488)
Q Consensus 246 -----~~~-----------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~ 303 (488)
.++ ..+.+.+.+.+++ ++++++++|++++..++ .+ .+.+.+|+++.+|+||.|.
T Consensus 102 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~-~v-~v~~~~g~~~~a~~vV~Ad 177 (407)
T 3rp8_A 102 GENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDAD-GV-TVWFTDGSSASGDLLIAAD 177 (407)
T ss_dssp CCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETT-EE-EEEETTSCEEEESEEEECC
T ss_pred CCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCC-cE-EEEEcCCCEEeeCEEEECC
Confidence 000 1233344444444 88999999999987543 33 5888999999999999999
Q ss_pred cCccCC
Q 011351 304 GAKPTV 309 (488)
Q Consensus 304 G~~p~~ 309 (488)
|.....
T Consensus 178 G~~S~v 183 (407)
T 3rp8_A 178 GSHSAL 183 (407)
T ss_dssp CTTCSS
T ss_pred CcChHH
Confidence 987654
No 274
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=97.92 E-value=9.4e-06 Score=82.45 Aligned_cols=97 Identities=13% Similarity=0.169 Sum_probs=70.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++++|||||+.|+.+|..|++.|. +|+++++.... +.+.. .+ .....+.
T Consensus 186 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~l----~~~d~-----------~~-----------~~~l~~~ 236 (483)
T 3dgh_A 186 EPGKTLVVGAGYIGLECAGFLKGLGY---EPTVMVRSIVL----RGFDQ-----------QM-----------AELVAAS 236 (483)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSCSS----TTSCH-----------HH-----------HHHHHHH
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC---EEEEEeCCCCC----cccCH-----------HH-----------HHHHHHH
Confidence 35789999999999999999999876 89999864211 00000 00 1123566
Q ss_pred HHHCCCeEEeCCcEEEEeCCC---cEEEeCCCc-----EEEeccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDIEK---QTLITNSGK-----LLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~---~~v~~~~g~-----~i~yd~lVlAtG~~~~ 175 (488)
+++.|++++.++.|.+++... ..+++.++. ++.+|.+++|+|..|.
T Consensus 237 l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~ 290 (483)
T 3dgh_A 237 MEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGL 290 (483)
T ss_dssp HHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEEC
T ss_pred HHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccC
Confidence 788899999998999987632 246665543 6899999999998765
No 275
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=97.91 E-value=3.6e-05 Score=76.05 Aligned_cols=100 Identities=18% Similarity=0.300 Sum_probs=71.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc----c--cCH-H---H-------------------------
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----L--FTP-S---L------------------------- 251 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~----~--~~~-~---~------------------------- 251 (488)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+..+ . +.+ . +
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 105 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADEK 105 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECCC
Confidence 468999999999999999999999999999987543211 0 000 0 0
Q ss_pred ---------------------HHHHHHHHHHc--CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 252 ---------------------AQRYEQLYQQN--GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 252 ---------------------~~~~~~~l~~~--GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
...+.+.|.+. +++++++++|++++.++ +.+ .+.+.+|+++.+|.||.|.|....
T Consensus 106 g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~-~~v-~v~~~~g~~~~ad~vV~AdG~~S~ 183 (398)
T 2xdo_A 106 GNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGK-KKW-TLTFENKPSETADLVILANGGMSK 183 (398)
T ss_dssp SEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECS-SSE-EEEETTSCCEEESEEEECSCTTCS
T ss_pred CCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECC-CEE-EEEECCCcEEecCEEEECCCcchh
Confidence 01122222221 35789999999998654 334 578889988999999999998765
No 276
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=97.90 E-value=9.3e-06 Score=82.39 Aligned_cols=99 Identities=16% Similarity=0.180 Sum_probs=72.2
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++++|||||+.|+.+|..|++.|. +|+++++.+... +.... .+ .....+.
T Consensus 186 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d~-----------~~-----------~~~~~~~ 237 (478)
T 3dk9_A 186 LPGRSVIVGAGYIAVEMAGILSALGS---KTSLMIRHDKVL---RSFDS-----------MI-----------STNCTEE 237 (478)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSC---TTSCH-----------HH-----------HHHHHHH
T ss_pred cCccEEEECCCHHHHHHHHHHHHcCC---eEEEEEeCCccc---cccCH-----------HH-----------HHHHHHH
Confidence 35799999999999999999999986 899999875421 00000 00 0123566
Q ss_pred HHHCCCeEEeCCcEEEEeCCC-c---EEEeCC---C----cEEEeccEEeccCCCCCc
Q 011351 130 YKEKGIEMIYQDPVTSIDIEK-Q---TLITNS---G----KLLKYGSLIVATGCTASR 176 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~-~---~v~~~~---g----~~i~yd~lVlAtG~~~~~ 176 (488)
+++.+++++.++.|.+++... . .+.+.+ + +++.+|.+++|+|..|..
T Consensus 238 l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~ 295 (478)
T 3dk9_A 238 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNT 295 (478)
T ss_dssp HHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESC
T ss_pred HHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCC
Confidence 788999999998999987542 2 455554 2 578999999999987653
No 277
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=97.90 E-value=5.6e-05 Score=77.80 Aligned_cols=99 Identities=17% Similarity=0.203 Sum_probs=75.9
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc--------------------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------------------------------------------- 243 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l-------------------------------------------- 243 (488)
..|+|||+|+.|+-+|..|++.|.+|+++++.+.+.
T Consensus 6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 85 (535)
T 3ihg_A 6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRLAE 85 (535)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEEES
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeEEe
Confidence 479999999999999999999999999999874220
Q ss_pred -------c----c-----------------cc-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCC---cEEEEEeCCC
Q 011351 244 -------Q----R-----------------LF-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG---RVAAVKLEDG 291 (488)
Q Consensus 244 -------~----~-----------------~~-~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~---~v~~v~l~~g 291 (488)
. . .+ ...+...+.+.+++.|+++++++++++++.++++ .+ .+.+.++
T Consensus 86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v-~v~~~~~ 164 (535)
T 3ihg_A 86 SVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGV-TARLAGP 164 (535)
T ss_dssp SSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEE-EEEEEET
T ss_pred ccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccE-EEEEEcC
Confidence 0 0 00 0234566777788889999999999999876442 33 4566665
Q ss_pred ---cEEEcCEEEEeecCcc
Q 011351 292 ---STIDADTIVIGIGAKP 307 (488)
Q Consensus 292 ---~~i~~D~vi~a~G~~p 307 (488)
.++.||+||.|.|...
T Consensus 165 ~~~~~i~a~~vV~AdG~~S 183 (535)
T 3ihg_A 165 DGEYDLRAGYLVGADGNRS 183 (535)
T ss_dssp TEEEEEEEEEEEECCCTTC
T ss_pred CCeEEEEeCEEEECCCCcc
Confidence 6799999999999864
No 278
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=97.88 E-value=0.0001 Score=70.01 Aligned_cols=101 Identities=21% Similarity=0.232 Sum_probs=73.4
Q ss_pred CeEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCcCcccc-------------------------------------cC
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQRL-------------------------------------FT 248 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~--g~~v~lv~~~~~~l~~~-------------------------------------~~ 248 (488)
..|+|||+|+.|+.+|..|++. |.+|+++++.+.+-... ..
T Consensus 66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~~ 145 (326)
T 2gjc_A 66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHA 145 (326)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESCH
T ss_pred CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcch
Confidence 3799999999999999999998 99999999865432100 01
Q ss_pred HHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCC--C-C--cEEEEEeC--------------CCcEEEc------------
Q 011351 249 PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGS--D-G--RVAAVKLE--------------DGSTIDA------------ 296 (488)
Q Consensus 249 ~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~--~-~--~v~~v~l~--------------~g~~i~~------------ 296 (488)
..+...+.+.+.+ .||+++.++.++++..++ + + ++.+|.+. ++.++.+
T Consensus 146 ~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~ 225 (326)
T 2gjc_A 146 ALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLS 225 (326)
T ss_dssp HHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCSS
T ss_pred HHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeecccccccccc
Confidence 2334455565666 499999999999998653 3 4 77777652 3457999
Q ss_pred ---CEEEEeecCccC
Q 011351 297 ---DTIVIGIGAKPT 308 (488)
Q Consensus 297 ---D~vi~a~G~~p~ 308 (488)
|.||.|||....
T Consensus 226 ~~~~~VV~ATG~~~~ 240 (326)
T 2gjc_A 226 QKHGVILSTTGHDGP 240 (326)
T ss_dssp TTCCEEEECCCCC--
T ss_pred ccCCEEEECcCCCch
Confidence 999999998754
No 279
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=97.88 E-value=5.1e-05 Score=78.45 Aligned_cols=98 Identities=18% Similarity=0.266 Sum_probs=75.6
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc-------------------------------------ccc----
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------------------------------------QRL---- 246 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l-------------------------------------~~~---- 246 (488)
..|+|||+|+.|+-+|..|++.|.+|+++++.+.+. ...
T Consensus 50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 129 (570)
T 3fmw_A 50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQG 129 (570)
T ss_dssp -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTTC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccccc
Confidence 469999999999999999999999999999753211 000
Q ss_pred ---------------c-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe--CCC-cEEEcCEEEEeecCcc
Q 011351 247 ---------------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDG-STIDADTIVIGIGAKP 307 (488)
Q Consensus 247 ---------------~-~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l--~~g-~~i~~D~vi~a~G~~p 307 (488)
+ ...+...+.+.+++.|++++++++|++++.++++ + .+.+ .+| +++.+|+||.|.|...
T Consensus 130 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~-v-~v~~~~~~G~~~~~a~~vV~ADG~~S 207 (570)
T 3fmw_A 130 LDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEA-V-EVTVAGPSGPYPVRARYGVGCDGGRS 207 (570)
T ss_dssp CBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSC-E-EEEEEETTEEEEEEESEEEECSCSSC
T ss_pred ccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCe-E-EEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence 0 1235566777778889999999999999865444 3 3555 778 6899999999999875
No 280
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=97.86 E-value=7.4e-06 Score=83.84 Aligned_cols=52 Identities=17% Similarity=0.311 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC
Q 011351 250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 305 (488)
Q Consensus 250 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~ 305 (488)
.+.+.+.+.+++.|+++++++.|++|..+ ++ .+++.+|+++.||.||+++..
T Consensus 223 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~-~~---~v~~~~G~~~~ad~vI~t~P~ 274 (513)
T 4gde_A 223 GIWIAVANTLPKEKTRFGEKGKVTKVNAN-NK---TVTLQDGTTIGYKKLVSTMAV 274 (513)
T ss_dssp HHHHHHHHTSCGGGEEESGGGCEEEEETT-TT---EEEETTSCEEEEEEEEECSCH
T ss_pred HHHHHHHHHHHhcCeeeecceEEEEEEcc-CC---EEEEcCCCEEECCEEEECCCH
Confidence 45666777778889999999999999853 33 467899999999999998664
No 281
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=97.86 E-value=0.00019 Score=73.88 Aligned_cols=56 Identities=16% Similarity=0.290 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351 253 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 309 (488)
Q Consensus 253 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~ 309 (488)
..+.+.+++.|++++.+ +|+++..++++.+..|.+.+|+++.+|.||.|+|.....
T Consensus 169 ~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~ 224 (538)
T 2aqj_A 169 DFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLL 224 (538)
T ss_dssp HHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCCC
T ss_pred HHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchhh
Confidence 44555666789999999 899998765666667888999889999999999997653
No 282
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=97.86 E-value=1.8e-05 Score=80.41 Aligned_cols=97 Identities=12% Similarity=0.157 Sum_probs=69.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++++|||||+.|+.+|..|++.|. +|+++++.... +.+.. .+ .....+.
T Consensus 184 ~~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~l----~~~d~-----------~~-----------~~~l~~~ 234 (488)
T 3dgz_A 184 SPGKTLVVGASYVALECAGFLTGIGL---DTTVMMRSIPL----RGFDQ-----------QM-----------SSLVTEH 234 (488)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCSS----TTSCH-----------HH-----------HHHHHHH
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---ceEEEEcCccc----ccCCH-----------HH-----------HHHHHHH
Confidence 45689999999999999999999986 89999875321 00000 00 1223566
Q ss_pred HHHCCCeEEeCCcEEEEeCC-C--cEEEeCC---Cc--EEEeccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDIE-K--QTLITNS---GK--LLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~-~--~~v~~~~---g~--~i~yd~lVlAtG~~~~ 175 (488)
+++.+++++.++.+.++... + ..+++.+ |+ ++.+|.+++|+|..|.
T Consensus 235 l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~ 288 (488)
T 3dgz_A 235 MESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPE 288 (488)
T ss_dssp HHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEES
T ss_pred HHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcc
Confidence 78899999999888888652 2 2455543 54 4789999999998765
No 283
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=97.85 E-value=6.5e-05 Score=80.19 Aligned_cols=38 Identities=24% Similarity=0.453 Sum_probs=33.7
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 89 (488)
+..++|+|||||++|+++|..|++.|+ +|+|+|+.+..
T Consensus 334 ~~~~~v~viG~G~~Gl~aA~~l~~~g~---~v~v~E~~~~~ 371 (776)
T 4gut_A 334 YHNKSVIIIGAGPAGLAAARQLHNFGI---KVTVLEAKDRI 371 (776)
T ss_dssp GTSCEEEEECCSHHHHHHHHHHHHHTC---EEEEECSSSSS
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCC---cEEEEecccce
Confidence 446899999999999999999999987 89999997643
No 284
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Probab=97.82 E-value=1e-05 Score=85.31 Aligned_cols=35 Identities=31% Similarity=0.459 Sum_probs=32.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHH-----cCCCCCcEEEEcCCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVE-----HGMADGRLCIVSKEAY 88 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~-----~g~~~~~V~lie~~~~ 88 (488)
+++|+|||||++|+++|..|++ .|+ +|+|||+.+.
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi---~v~viE~~~~ 47 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDL---KVRIIDKRST 47 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTC---CEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCCC---CEEEEeCCCC
Confidence 5799999999999999999999 888 8999999764
No 285
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=97.81 E-value=0.00015 Score=73.96 Aligned_cols=58 Identities=17% Similarity=0.260 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC-c--EEEcC-EEEEeecCcc
Q 011351 250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-S--TIDAD-TIVIGIGAKP 307 (488)
Q Consensus 250 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g-~--~i~~D-~vi~a~G~~p 307 (488)
.+...+.+.+++.|+++++++.++++..++++++.+|...++ + ++.+| .||+|+|-..
T Consensus 203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~ 264 (510)
T 4at0_A 203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA 264 (510)
T ss_dssp HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence 455566677788899999999999998765678887776543 2 58996 9999999654
No 286
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=97.81 E-value=1.8e-05 Score=80.59 Aligned_cols=101 Identities=17% Similarity=0.316 Sum_probs=68.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc---------ccCH-HHHHHHHHHH--HHcCcEEEcCCeEEE
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR---------LFTP-SLAQRYEQLY--QQNGVKFVKGASIKN 274 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~---------~~~~-~~~~~~~~~l--~~~GV~v~~~~~v~~ 274 (488)
.++|||||+|+.|+.+|..|.+.+.+|++|++.+.+.-. .+++ ++...+.+.+ ++.+++++.+ ++++
T Consensus 42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~-~v~~ 120 (502)
T 4g6h_A 42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEA-EATS 120 (502)
T ss_dssp SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEE-EEEE
T ss_pred CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEEE-EEEE
Confidence 358999999999999999999889999999998753211 1111 1111122322 3457888875 6888
Q ss_pred EEeCCCCcEEEEE------------------eCCCcEEEcCEEEEeecCccCCh
Q 011351 275 LEAGSDGRVAAVK------------------LEDGSTIDADTIVIGIGAKPTVS 310 (488)
Q Consensus 275 i~~~~~~~v~~v~------------------l~~g~~i~~D~vi~a~G~~p~~~ 310 (488)
|+.+ ...+ .+. ..++.++++|.+|+|+|.+|+..
T Consensus 121 ID~~-~k~V-~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~ 172 (502)
T 4g6h_A 121 INPD-RNTV-TIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTF 172 (502)
T ss_dssp EEGG-GTEE-EEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCT
T ss_pred EEhh-hCEE-EEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccC
Confidence 8753 2222 221 13567899999999999998753
No 287
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=97.79 E-value=3.7e-05 Score=77.68 Aligned_cols=98 Identities=23% Similarity=0.291 Sum_probs=71.2
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc------------------------------cCH-H------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------------------------------FTP-S------ 250 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~------------------------------~~~-~------ 250 (488)
..++|||+|+.|+.+|..|++.|.+|+++++.+.+-... ++. .
T Consensus 5 ~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (466)
T 3l8k_A 5 YDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDRKD 84 (466)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Confidence 369999999999999999999999999999766542110 000 0
Q ss_pred ----HH--HHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcE--EEcCEEEEeecCccCCh
Q 011351 251 ----LA--QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGAKPTVS 310 (488)
Q Consensus 251 ----~~--~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~--i~~D~vi~a~G~~p~~~ 310 (488)
+. ..+...+++.||+++.+ ++..++. .. ..|.+.+|++ +.+|.+|+|||.+|...
T Consensus 85 ~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id~---~~-~~V~~~~g~~~~~~~d~lviAtG~~p~~p 147 (466)
T 3l8k_A 85 YVQELRFKQHKRNMSQYETLTFYKG-YVKIKDP---TH-VIVKTDEGKEIEAETRYMIIASGAETAKL 147 (466)
T ss_dssp HHHHHHHHHHHHHHTTCTTEEEESE-EEEEEET---TE-EEEEETTSCEEEEEEEEEEECCCEEECCC
T ss_pred hheeccccchHHHHHHhCCCEEEEe-EEEEecC---Ce-EEEEcCCCcEEEEecCEEEECCCCCccCC
Confidence 01 33444556679999888 5666652 22 3577788888 99999999999988643
No 288
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=97.78 E-value=0.00016 Score=68.97 Aligned_cols=139 Identities=21% Similarity=0.226 Sum_probs=90.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCcCccc------------------------------------c-c
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQR------------------------------------L-F 247 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~--g~~v~lv~~~~~~l~~------------------------------------~-~ 247 (488)
...|+|||+|+.|+.+|..|++. |.+|+++++.+.+-.. . .
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~ 158 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKH 158 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEec
Confidence 35799999999999999999997 9999999987533100 0 0
Q ss_pred CHHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCC----------------C--cEEEEEeC--------------CCcEE
Q 011351 248 TPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSD----------------G--RVAAVKLE--------------DGSTI 294 (488)
Q Consensus 248 ~~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~----------------~--~v~~v~l~--------------~g~~i 294 (488)
..++.+.+.+.+.+ .|++++.++.++++..+++ + ++.+|... +..++
T Consensus 159 ~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i 238 (344)
T 3jsk_A 159 AALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTI 238 (344)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEE
Confidence 12334555566666 5999999999999875432 2 66666552 23479
Q ss_pred EcCEEEEeecCccCC-h----hhhhcCCccc-CCCEEeCCC-------CCC--CCCCEEEEceecc
Q 011351 295 DADTIVIGIGAKPTV-S----PFERVGLNSS-VGGIQVDGQ-------FRT--RMPGIFAIGDVAA 345 (488)
Q Consensus 295 ~~D~vi~a~G~~p~~-~----~~~~~gl~~~-~g~i~vd~~-------~~t--~~~~Ifa~GD~a~ 345 (488)
.++.||.|+|..... . .+...++... .|.-..|-. -.| -+|++|++|=.+.
T Consensus 239 ~Ak~VV~ATG~~s~v~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~t~~v~~gl~~~gm~~~ 304 (344)
T 3jsk_A 239 NAPVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNNTREIVPGLIVGGMELS 304 (344)
T ss_dssp ECSEEEECCCSSSSSSCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHTCEEEETTEEECGGGHH
T ss_pred EcCEEEECCCCCchhhHHHHHHHhhcCcccccCCCcccccccchhhhcccCceEcCCEEEechhhH
Confidence 999999999987652 1 1334454311 111111100 012 3799999997764
No 289
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=97.76 E-value=0.00021 Score=72.75 Aligned_cols=100 Identities=18% Similarity=0.270 Sum_probs=76.9
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc----------------------cc-----------------
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------RL----------------- 246 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~----------------------~~----------------- 246 (488)
....|+|||+|+.|+-+|..|++.|.+|+++++.+.+.. ..
T Consensus 11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~ 90 (499)
T 2qa2_A 11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVD 90 (499)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEE
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceecc
Confidence 345799999999999999999999999999997632110 00
Q ss_pred -------------c-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc---EEEcCEEEEeecCcc
Q 011351 247 -------------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS---TIDADTIVIGIGAKP 307 (488)
Q Consensus 247 -------------~-~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~---~i~~D~vi~a~G~~p 307 (488)
+ ...+.+.+.+.+++.|+++++++++++++.+++ .+ .+.+.+++ ++.+|+||.|.|...
T Consensus 91 ~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~v-~v~~~~~~g~~~~~a~~vVgADG~~S 166 (499)
T 2qa2_A 91 FGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGD-HV-VVEVEGPDGPRSLTTRYVVGCDGGRS 166 (499)
T ss_dssp GGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSS-CE-EEEEECSSCEEEEEEEEEEECCCTTC
T ss_pred cccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCC-EE-EEEEEcCCCcEEEEeCEEEEccCccc
Confidence 0 023556677777888999999999999987644 34 46777764 799999999999875
No 290
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=97.76 E-value=1.1e-05 Score=81.50 Aligned_cols=41 Identities=27% Similarity=0.519 Sum_probs=34.4
Q ss_pred cEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351 264 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 306 (488)
Q Consensus 264 V~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~ 306 (488)
+++++++.|++|+..+++ + .|.+.+|+++.+|.||+|++..
T Consensus 248 ~~i~~~~~V~~i~~~~~~-~-~v~~~~g~~~~ad~vi~a~p~~ 288 (470)
T 3i6d_A 248 TKVYKGTKVTKLSHSGSC-Y-SLELDNGVTLDADSVIVTAPHK 288 (470)
T ss_dssp EEEECSCCEEEEEECSSS-E-EEEESSSCEEEESEEEECSCHH
T ss_pred CEEEeCCceEEEEEcCCe-E-EEEECCCCEEECCEEEECCCHH
Confidence 699999999999876443 3 6888999889999999998753
No 291
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=97.75 E-value=2.3e-05 Score=76.40 Aligned_cols=37 Identities=16% Similarity=0.355 Sum_probs=33.3
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
+.+++||+|||||++|+++|++|++.|. +|+|||++.
T Consensus 3 m~~~~dVvVIG~Gi~Gls~A~~La~~G~---~V~vle~~~ 39 (363)
T 1c0p_A 3 MHSQKRVVVLGSGVIGLSSALILARKGY---SVHILARDL 39 (363)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHhCCC---EEEEEeccC
Confidence 3456899999999999999999999987 899999875
No 292
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=97.75 E-value=0.00014 Score=72.13 Aligned_cols=98 Identities=17% Similarity=0.224 Sum_probs=72.5
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCc-EEEEecCCcCccc----cc-----------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQR----LF----------------------------------- 247 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~-v~lv~~~~~~l~~----~~----------------------------------- 247 (488)
.+|+|||+|+.|+-+|..|++.|.+ |+++++.+.+.+. .+
T Consensus 5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~g~ 84 (410)
T 3c96_A 5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSGA 84 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTSC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcCCCC
Confidence 5799999999999999999999999 9999987542110 00
Q ss_pred ---------------------CHHHHHHHHHHHHH-cC-cEEEcCCeEEEEEeCCCCcEEEEEeCC---C--cEEEcCEE
Q 011351 248 ---------------------TPSLAQRYEQLYQQ-NG-VKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTI 299 (488)
Q Consensus 248 ---------------------~~~~~~~~~~~l~~-~G-V~v~~~~~v~~i~~~~~~~v~~v~l~~---g--~~i~~D~v 299 (488)
...+.+.+.+.+++ .| +++++++++++++. +++ + .+.+.+ | +++.+|+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~-v-~v~~~~~~~g~~~~~~ad~v 161 (410)
T 3c96_A 85 TVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDG-R-VLIGARDGHGKPQALGADVL 161 (410)
T ss_dssp EEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETT-E-EEEEEEETTSCEEEEEESEE
T ss_pred EEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCc-c-EEEEecCCCCCceEEecCEE
Confidence 01344555566655 35 68999999999986 443 3 355554 7 57999999
Q ss_pred EEeecCccC
Q 011351 300 VIGIGAKPT 308 (488)
Q Consensus 300 i~a~G~~p~ 308 (488)
|.|.|....
T Consensus 162 V~AdG~~S~ 170 (410)
T 3c96_A 162 VGADGIHSA 170 (410)
T ss_dssp EECCCTTCH
T ss_pred EECCCccch
Confidence 999998764
No 293
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=97.70 E-value=4.7e-05 Score=77.42 Aligned_cols=101 Identities=17% Similarity=0.206 Sum_probs=71.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc---------c---CHHHHHHHHHHHHHcCcEEEcCCeEEE
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL---------F---TPSLAQRYEQLYQQNGVKFVKGASIKN 274 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~---------~---~~~~~~~~~~~l~~~GV~v~~~~~v~~ 274 (488)
..+|+|||+|+.|+.+|..|++. .+|+++++.+.+-... + ..++...+.+.+ +.|++++.++.+.+
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v~~ 185 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSALG 185 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEECC
T ss_pred cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEEEE
Confidence 35799999999999999999999 9999999887542110 1 112223333333 56999999999988
Q ss_pred EEeCCCCcEEEEEeCCCc--EEEcCEEEEeecCccCCh
Q 011351 275 LEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS 310 (488)
Q Consensus 275 i~~~~~~~v~~v~l~~g~--~i~~D~vi~a~G~~p~~~ 310 (488)
+... +..+......+++ ++.+|.+|+|+|..|...
T Consensus 186 i~~~-~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~ 222 (493)
T 1y56_A 186 VFDK-GEYFLVPVVRGDKLIEILAKRVVLATGAIDSTM 222 (493)
T ss_dssp CEEC-SSSEEEEEEETTEEEEEEESCEEECCCEEECCC
T ss_pred EEcC-CcEEEEEEecCCeEEEEECCEEEECCCCCccCC
Confidence 8754 3333222334554 689999999999987643
No 294
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=97.70 E-value=6.5e-05 Score=74.35 Aligned_cols=63 Identities=24% Similarity=0.254 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHcCcEEEcCCeEE---------EEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhh-hcCC
Q 011351 251 LAQRYEQLYQQNGVKFVKGASIK---------NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE-RVGL 317 (488)
Q Consensus 251 ~~~~~~~~l~~~GV~v~~~~~v~---------~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~-~~gl 317 (488)
+...+.+.+++.|++++.+++|+ ++..+ ++.+ .|.+.+| ++.+|.||+|+|.... .+++ .+++
T Consensus 174 l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~-~~~v-~v~~~~g-~i~a~~VV~A~G~~s~-~l~~~~~g~ 246 (405)
T 3c4n_A 174 LALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVT-NTHQ-IVVHETR-QIRAGVIIVAAGAAGP-ALVEQGLGL 246 (405)
T ss_dssp HHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC---------CBCCE-EEEEEEEEECCGGGHH-HHHHHHHCC
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEeccccccccceEee-CCeE-EEEECCc-EEECCEEEECCCccHH-HHHHHhcCC
Confidence 44556677778899999999999 87643 3444 5666666 7999999999998753 4455 4443
No 295
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=97.70 E-value=0.00022 Score=72.54 Aligned_cols=100 Identities=20% Similarity=0.226 Sum_probs=76.3
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc----------------------cc-----------------
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------RL----------------- 246 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~----------------------~~----------------- 246 (488)
....|+|||+|+.|+-+|..|++.|.+|+++++.+.+.. ..
T Consensus 10 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~ 89 (500)
T 2qa1_A 10 SDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPID 89 (500)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEEE
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceecc
Confidence 345799999999999999999999999999997632110 00
Q ss_pred ---c-----------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc---EEEcCEEEEeecCcc
Q 011351 247 ---F-----------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS---TIDADTIVIGIGAKP 307 (488)
Q Consensus 247 ---~-----------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~---~i~~D~vi~a~G~~p 307 (488)
. ...+.+.+.+.+++.|+++++++++++++.+++ .+ .+.+.+++ ++.+|+||.|.|...
T Consensus 90 ~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~v-~v~~~~~~g~~~~~a~~vVgADG~~S 165 (500)
T 2qa1_A 90 FGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGA-GV-TVEVRGPEGKHTLRAAYLVGCDGGRS 165 (500)
T ss_dssp GGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETT-EE-EEEEEETTEEEEEEESEEEECCCTTC
T ss_pred cccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCC-eE-EEEEEcCCCCEEEEeCEEEECCCcch
Confidence 0 023455667777888999999999999987544 34 46666664 799999999999875
No 296
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=97.68 E-value=5.5e-05 Score=77.48 Aligned_cols=97 Identities=15% Similarity=0.241 Sum_probs=66.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++++|||||+.|+.+|..|++.|. +|+++++.... +.+.. .+ .....+.
T Consensus 209 ~~~~vvVIGgG~ig~E~A~~l~~~G~---~Vtlv~~~~~l----~~~d~-----------~~-----------~~~~~~~ 259 (519)
T 3qfa_A 209 CPGKTLVVGASYVALECAGFLAGIGL---DVTVMVRSILL----RGFDQ-----------DM-----------ANKIGEH 259 (519)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCSS----TTSCH-----------HH-----------HHHHHHH
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCC---eEEEEeccccc----ccCCH-----------HH-----------HHHHHHH
Confidence 35679999999999999999999986 89999864211 00000 00 1123456
Q ss_pred HHHCCCeEEeCCcEEEEeCCC----c--EEE--eCCC-c--EEEeccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDIEK----Q--TLI--TNSG-K--LLKYGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~----~--~v~--~~~g-~--~i~yd~lVlAtG~~~~ 175 (488)
+++.||+++.++.+..+.... . .++ ..++ + ++.+|.+++|+|..|.
T Consensus 260 l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~ 316 (519)
T 3qfa_A 260 MEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDAC 316 (519)
T ss_dssp HHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEES
T ss_pred HHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCccc
Confidence 788999999987766665321 2 232 2344 2 5789999999998765
No 297
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=97.68 E-value=4.1e-05 Score=74.48 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=34.7
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC-CCC
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE-AYA 89 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~-~~~ 89 (488)
+...++|+|||||++||+||..|++.|+ +|+|+|++ +..
T Consensus 41 ~~~~~~V~IIGAGiaGL~aA~~L~~~G~---~V~VlE~~~~~v 80 (376)
T 2e1m_A 41 PGPPKRILIVGAGIAGLVAGDLLTRAGH---DVTILEANANRV 80 (376)
T ss_dssp CCSCCEEEEECCBHHHHHHHHHHHHTSC---EEEEECSCSSCC
T ss_pred CCCCceEEEECCCHHHHHHHHHHHHCCC---cEEEEecccccc
Confidence 4556899999999999999999999987 89999998 654
No 298
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=97.68 E-value=2.6e-05 Score=77.93 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=31.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
++++|+|||||++|+++|..|++.|+ +|+|||+.+
T Consensus 21 m~~~ViIVGaGpaGl~~A~~La~~G~---~V~viE~~~ 55 (430)
T 3ihm_A 21 MKKRIGIVGAGTAGLHLGLFLRQHDV---DVTVYTDRK 55 (430)
T ss_dssp --CEEEEECCHHHHHHHHHHHHHTTC---EEEEEESCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCC---eEEEEcCCC
Confidence 45799999999999999999999988 899999976
No 299
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=97.65 E-value=0.00042 Score=68.19 Aligned_cols=59 Identities=24% Similarity=0.374 Sum_probs=42.7
Q ss_pred HHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcC
Q 011351 254 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 316 (488)
Q Consensus 254 ~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~g 316 (488)
.+.+.+++.|++++++++|++++.++ +.+ .|.+.+| ++.+|.||+|+|.... .+++.++
T Consensus 158 ~l~~~a~~~Gv~i~~~~~V~~i~~~~-~~v-~v~t~~g-~i~a~~VV~A~G~~s~-~l~~~~g 216 (397)
T 2oln_A 158 ALFTLAQAAGATLRAGETVTELVPDA-DGV-SVTTDRG-TYRAGKVVLACGPYTN-DLLEPLG 216 (397)
T ss_dssp HHHHHHHHTTCEEEESCCEEEEEEET-TEE-EEEESSC-EEEEEEEEECCGGGHH-HHHGGGT
T ss_pred HHHHHHHHcCCEEECCCEEEEEEEcC-CeE-EEEECCC-EEEcCEEEEcCCcChH-HHhhhcC
Confidence 34455677899999999999998653 334 4666665 6999999999998643 3444444
No 300
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=97.64 E-value=0.00032 Score=76.13 Aligned_cols=55 Identities=27% Similarity=0.378 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351 251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 307 (488)
Q Consensus 251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p 307 (488)
+...+.+.+++.|++++.++.|++++.. ++.+..|.+.+| ++.||.||+|+|...
T Consensus 153 l~~~L~~~a~~~Gv~i~~~t~V~~i~~~-~~~v~~V~t~~G-~i~Ad~VV~AaG~~s 207 (830)
T 1pj5_A 153 AVQLLIKRTESAGVTYRGSTTVTGIEQS-GGRVTGVQTADG-VIPADIVVSCAGFWG 207 (830)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred HHHHHHHHHHHcCCEEECCceEEEEEEe-CCEEEEEEECCc-EEECCEEEECCccch
Confidence 3345566678889999999999999864 455666788777 799999999999865
No 301
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=97.63 E-value=4.9e-05 Score=75.65 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351 250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 306 (488)
Q Consensus 250 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~ 306 (488)
.+....++..+..+.++++++.|++|+.. ++.+ .|.+.+|+ +.+|.||++++..
T Consensus 204 g~~~l~~~l~~~l~~~v~~~~~V~~i~~~-~~~v-~v~~~~g~-~~ad~Vv~a~~~~ 257 (424)
T 2b9w_A 204 GTQAMFEHLNATLEHPAERNVDITRITRE-DGKV-HIHTTDWD-RESDVLVLTVPLE 257 (424)
T ss_dssp CHHHHHHHHHHHSSSCCBCSCCEEEEECC-TTCE-EEEESSCE-EEESEEEECSCHH
T ss_pred hHHHHHHHHHHhhcceEEcCCEEEEEEEE-CCEE-EEEECCCe-EEcCEEEECCCHH
Confidence 34455555556667788999999999865 4445 47888875 8999999998864
No 302
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=97.63 E-value=0.00046 Score=70.44 Aligned_cols=55 Identities=16% Similarity=0.262 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 253 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 253 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
..+.+.+++.|++++.+ +|++++.++++.+..|.+.+|+++.+|.||.|+|....
T Consensus 177 ~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~ 231 (511)
T 2weu_A 177 RYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGL 231 (511)
T ss_dssp HHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCC
T ss_pred HHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchH
Confidence 44555667789999999 99999876566677888999988999999999999764
No 303
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=97.63 E-value=3.9e-05 Score=77.65 Aligned_cols=55 Identities=29% Similarity=0.465 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351 250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 306 (488)
Q Consensus 250 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~ 306 (488)
.+.+.+.+.+++.|++|++++.|++|+..+++.+ .|.+ ++.++.+|.||+|++..
T Consensus 235 ~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~-~v~~-~~~~~~ad~vv~a~p~~ 289 (477)
T 3nks_A 235 MLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRW-KVSL-RDSSLEADHVISAIPAS 289 (477)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCE-EEEC-SSCEEEESEEEECSCHH
T ss_pred HHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceE-EEEE-CCeEEEcCEEEECCCHH
Confidence 5777888888999999999999999986543323 5655 55579999999998753
No 304
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=97.62 E-value=5.4e-05 Score=80.31 Aligned_cols=99 Identities=13% Similarity=0.176 Sum_probs=72.5
Q ss_pred CCCeEEEEc--CchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCH
Q 011351 50 ENREFVIVG--GGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (488)
Q Consensus 50 ~~~~vvIIG--gG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (488)
..++|+||| +|..|+.+|..|++.|. +|++++..+...- .... . .. .....
T Consensus 522 ~g~~VvViG~ggG~~g~e~A~~L~~~g~---~Vtlv~~~~~l~~--------~~~~--~---~~-----------~~~l~ 574 (690)
T 3k30_A 522 DGKKVVVYDDDHYYLGGVVAELLAQKGY---EVSIVTPGAQVSS--------WTNN--T---FE-----------VNRIQ 574 (690)
T ss_dssp SSSEEEEEECSCSSHHHHHHHHHHHTTC---EEEEEESSSSTTG--------GGGG--G---TC-----------HHHHH
T ss_pred CCCEEEEEcCCCCccHHHHHHHHHhCCC---eeEEEeccccccc--------cccc--c---hh-----------HHHHH
Confidence 456899999 99999999999999976 8999997754210 0000 0 00 01245
Q ss_pred hHHHHCCCeEEeCCcEEEEeCCCcEEEe---CCCcEEEeccEEeccCCCCC
Q 011351 128 EWYKEKGIEMIYQDPVTSIDIEKQTLIT---NSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 128 ~~~~~~~i~~~~~~~v~~id~~~~~v~~---~~g~~i~yd~lVlAtG~~~~ 175 (488)
+.+++.|++++.+++|++++.+...+.. .+++++.+|.||+|+|..|.
T Consensus 575 ~~l~~~GV~i~~~~~V~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~ 625 (690)
T 3k30_A 575 RRLIENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDAVVMVTARLPR 625 (690)
T ss_dssp HHHHHTTCEEEESEEEEEEETTEEEEEETTTCCEEEEECSEEEEESCEEEC
T ss_pred HHHHHCCCEEEcCcEEEEEECCeEEEEEccCCeEEEEECCEEEECCCCCCC
Confidence 6678899999999999999876655553 24567999999999997654
No 305
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=97.61 E-value=0.00059 Score=67.74 Aligned_cols=51 Identities=24% Similarity=0.416 Sum_probs=40.6
Q ss_pred HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 256 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 256 ~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
.+.+++.|+++++++.|++|..+ ++++.+|.++ |+++.+|.||+|+|....
T Consensus 203 ~~~~~~~G~~i~~~~~V~~i~~~-~~~~~gv~~~-g~~~~ad~VV~a~~~~~~ 253 (425)
T 3ka7_A 203 ETVISANGGKIHTGQEVSKILIE-NGKAAGIIAD-DRIHDADLVISNLGHAAT 253 (425)
T ss_dssp HHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEET-TEEEECSEEEECSCHHHH
T ss_pred HHHHHHcCCEEEECCceeEEEEE-CCEEEEEEEC-CEEEECCEEEECCCHHHH
Confidence 35566789999999999999865 5666667765 778999999999987543
No 306
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=97.61 E-value=3.1e-05 Score=79.36 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=34.0
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcC-CCCCcEEEEcCCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEAYAP 90 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g-~~~~~V~lie~~~~~~ 90 (488)
++++|+|||||+|||+||..|++.| . +|+|+|+++...
T Consensus 7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~---~V~VlEa~~riG 45 (516)
T 1rsg_A 7 AKKKVIIIGAGIAGLKAASTLHQNGIQ---DCLVLEARDRVG 45 (516)
T ss_dssp EEEEEEEECCBHHHHHHHHHHHHTTCC---SEEEECSSSSSB
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcCCC---CEEEEeCCCCCC
Confidence 4579999999999999999999998 6 899999997653
No 307
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=97.60 E-value=0.00037 Score=71.45 Aligned_cols=55 Identities=16% Similarity=0.266 Sum_probs=44.1
Q ss_pred HHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 253 QRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 253 ~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
+.+.+.+++ .|++++.+ +|++++.++++.+..|.+.+|+++.+|.||.|+|....
T Consensus 179 ~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~ 234 (526)
T 2pyx_A 179 QLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSL 234 (526)
T ss_dssp HHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCC
T ss_pred HHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchH
Confidence 344555666 79999999 69999876566666788888878999999999999764
No 308
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=97.60 E-value=5.3e-05 Score=76.17 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCC-CCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~-~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
..+.+.+.+.+++.|.++++++.|++|.... ++++..|.+ +|+++.||.||+++|..+.
T Consensus 242 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~ 301 (453)
T 2bcg_G 242 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE 301 (453)
T ss_dssp THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred HHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence 4677888888999999999999999998642 566666776 5788999999999998764
No 309
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=97.60 E-value=5.4e-05 Score=74.74 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=34.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYAP 90 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~lie~~~~~~ 90 (488)
+++||+|||||++|++||..|++. |. +|+|+|+++...
T Consensus 6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~---~v~v~E~~~~~G 44 (399)
T 1v0j_A 6 ARFDLFVVGSGFFGLTIAERVATQLDK---RVLVLERRPHIG 44 (399)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHHSCC---CEEEECSSSSSS
T ss_pred ccCCEEEECCCHHHHHHHHHHHHhCCC---CEEEEeCCCCCC
Confidence 368999999999999999999998 77 899999997653
No 310
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=97.59 E-value=3.7e-05 Score=85.10 Aligned_cols=93 Identities=20% Similarity=0.264 Sum_probs=71.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCcCcc--------cccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~-~v~lv~~~~~~l~--------~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 277 (488)
+++|+|||+|+.|+.+|..|++.|. +|+++++.+.+.. ..++.+..++..+.+++.||++++++.+..
T Consensus 187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~--- 263 (1025)
T 1gte_A 187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE--- 263 (1025)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST---
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHCCcEEEcccEecc---
Confidence 5789999999999999999999998 7999998765421 013445666667788999999999976521
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEeecC-ccC
Q 011351 278 GSDGRVAAVKLEDGSTIDADTIVIGIGA-KPT 308 (488)
Q Consensus 278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~-~p~ 308 (488)
. .+.+++++++.+|.||+|||. +|.
T Consensus 264 ---~---~v~~~~~~~~~~d~vvlAtGa~~p~ 289 (1025)
T 1gte_A 264 ---N---EITLNTLKEEGYKAAFIGIGLPEPK 289 (1025)
T ss_dssp ---T---SBCHHHHHHTTCCEEEECCCCCEEC
T ss_pred ---c---eEEhhhcCccCCCEEEEecCCCCCC
Confidence 1 134455556889999999998 475
No 311
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=97.59 E-value=3.1e-05 Score=77.97 Aligned_cols=91 Identities=14% Similarity=0.185 Sum_probs=69.0
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCcCc--------ccc-cCHHHHHHHHHHHHHcCcEEEcCCeEEE
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLL--------QRL-FTPSLAQRYEQLYQQNGVKFVKGASIKN 274 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g--~~v~lv~~~~~~l--------~~~-~~~~~~~~~~~~l~~~GV~v~~~~~v~~ 274 (488)
..++++|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +.. ...++...+.+.+++.||+++.++.+.
T Consensus 5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~- 83 (460)
T 1cjc_A 5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG- 83 (460)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT-
T ss_pred CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEe-
Confidence 3578999999999999999999988 8999999987654 111 123456677788888999999987652
Q ss_pred EEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351 275 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 307 (488)
Q Consensus 275 i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p 307 (488)
. .|.+++. ++.+|.||+|||..|
T Consensus 84 ------~---~V~~~~~-~~~~d~lVlAtGs~~ 106 (460)
T 1cjc_A 84 ------R---DVTVQEL-QDAYHAVVLSYGAED 106 (460)
T ss_dssp ------T---TBCHHHH-HHHSSEEEECCCCCE
T ss_pred ------e---EEEeccc-eEEcCEEEEecCcCC
Confidence 1 1333333 478999999999985
No 312
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=97.59 E-value=3.3e-05 Score=77.65 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=33.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 89 (488)
+++||+|||||++||+||..|++.|+ +|+|+|+++..
T Consensus 4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~---~v~v~E~~~~~ 40 (453)
T 2yg5_A 4 LQRDVAIVGAGPSGLAAATALRKAGL---SVAVIEARDRV 40 (453)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSS
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCC---cEEEEECCCCC
Confidence 45799999999999999999999987 79999998765
No 313
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=97.58 E-value=5e-05 Score=75.61 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=32.0
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 89 (488)
+||+|||||++|++||++|++.|. +|+|+|+++..
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~---~V~vlE~~~~~ 35 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAGH---EVEVFERLPIT 35 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTTC---EEEEECSSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC---ceEEEeCCCCC
Confidence 489999999999999999999987 89999998753
No 314
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=97.58 E-value=0.00011 Score=76.62 Aligned_cols=97 Identities=11% Similarity=0.205 Sum_probs=66.3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
..++|+|||||+.|+.+|..|++.|. +|+++++.... +.+.. .+ .....+.
T Consensus 285 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~l----~~~d~-----------~~-----------~~~~~~~ 335 (598)
T 2x8g_A 285 FPGKTLVIGASYVALECAGFLASLGG---DVTVMVRSILL----RGFDQ-----------QM-----------AEKVGDY 335 (598)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCSS----TTSCH-----------HH-----------HHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC---EEEEEECCcCc----CcCCH-----------HH-----------HHHHHHH
Confidence 34689999999999999999999986 79999876211 00000 00 0123456
Q ss_pred HHHCCCeEEeCCcEEEEeC-------C--CcE--EE--eCCCcEEE--eccEEeccCCCCC
Q 011351 130 YKEKGIEMIYQDPVTSIDI-------E--KQT--LI--TNSGKLLK--YGSLIVATGCTAS 175 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~-------~--~~~--v~--~~~g~~i~--yd~lVlAtG~~~~ 175 (488)
+++.||+++.++.+..+.. . ... +. ..+|+++. +|.+++|+|..|.
T Consensus 336 l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~ 396 (598)
T 2x8g_A 336 MENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQ 396 (598)
T ss_dssp HHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEEC
T ss_pred HHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccc
Confidence 6788999999877766632 1 122 22 35776555 9999999998765
No 315
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=97.58 E-value=0.00029 Score=77.39 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=71.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc-------c----CHHHHHHHHHHHHHc-CcEEEcCCeEEE
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-------F----TPSLAQRYEQLYQQN-GVKFVKGASIKN 274 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~-------~----~~~~~~~~~~~l~~~-GV~v~~~~~v~~ 274 (488)
..+++|||+|+.|+.+|..+++.|.+|+++++.+.+-... + ..+....+.+.+.+. +|+++.++.+..
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V~~ 207 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTVFG 207 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEEEE
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEEEe
Confidence 3579999999999999999999999999999876542111 1 123334445556664 999999999988
Q ss_pred EEeCCCCcEEEEEe---------------CCCcEEEcCEEEEeecCccCC
Q 011351 275 LEAGSDGRVAAVKL---------------EDGSTIDADTIVIGIGAKPTV 309 (488)
Q Consensus 275 i~~~~~~~v~~v~l---------------~~g~~i~~D~vi~a~G~~p~~ 309 (488)
+.. .+.+..+.. .++.++.+|.+|+|||..|..
T Consensus 208 i~~--~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~ 255 (965)
T 2gag_A 208 SYD--ANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERP 255 (965)
T ss_dssp EET--TTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECC
T ss_pred eec--CCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCC
Confidence 863 232222211 112368999999999998764
No 316
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=97.54 E-value=7.5e-05 Score=75.87 Aligned_cols=39 Identities=18% Similarity=0.353 Sum_probs=34.7
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 90 (488)
++.++|+|||||+|||+||..|++.|. +|+|+|+.+...
T Consensus 9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~---~v~v~E~~~~~G 47 (489)
T 2jae_A 9 KGSHSVVVLGGGPAGLCSAFELQKAGY---KVTVLEARTRPG 47 (489)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSC
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEeccCCCC
Confidence 456799999999999999999999987 899999987643
No 317
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*
Probab=97.52 E-value=8e-05 Score=73.01 Aligned_cols=40 Identities=25% Similarity=0.417 Sum_probs=34.9
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 90 (488)
....+||+|||||++|+++|..|++.|. +|+|+|+.+...
T Consensus 26 ~~~~~dv~IIGaG~aGl~aA~~l~~~g~---~v~v~E~~~~~G 65 (397)
T 3hdq_A 26 ESKGFDYLIVGAGFAGSVLAERLASSGQ---RVLIVDRRPHIG 65 (397)
T ss_dssp CCCCEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSS
T ss_pred cCCCCCEEEECccHHHHHHHHHHHHCCC---ceEEEeccCCCC
Confidence 3456899999999999999999999987 899999987643
No 318
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=97.52 E-value=2.7e-05 Score=78.27 Aligned_cols=89 Identities=15% Similarity=0.203 Sum_probs=68.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHh-C------CCcEEEEecCCcCccc---------ccCHHHHHHHHHHHHHcCcEEEcCC
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVG-W------KLDTTIIFPENHLLQR---------LFTPSLAQRYEQLYQQNGVKFVKGA 270 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~-~------g~~v~lv~~~~~~l~~---------~~~~~~~~~~~~~l~~~GV~v~~~~ 270 (488)
.++|+|||+|+.|+.+|..|.+ . +.+|+++++.+.+... ....++...+.+.+++.||+++.+.
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~v 82 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV 82 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEeeE
Confidence 4689999999999999999998 7 8999999998765321 1223566677777888899999885
Q ss_pred eEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351 271 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 306 (488)
Q Consensus 271 ~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~ 306 (488)
.+ + . .|.++++ ++.+|.||+|||..
T Consensus 83 ~v-----~--~---~v~~~~~-~~~~d~lViAtG~~ 107 (456)
T 1lqt_A 83 VV-----G--E---HVQPGEL-SERYDAVIYAVGAQ 107 (456)
T ss_dssp CB-----T--T---TBCHHHH-HHHSSEEEECCCCC
T ss_pred EE-----C--C---EEEECCC-eEeCCEEEEeeCCC
Confidence 43 1 1 2444555 48899999999997
No 319
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=97.49 E-value=7.5e-05 Score=76.61 Aligned_cols=44 Identities=23% Similarity=0.244 Sum_probs=34.7
Q ss_pred HH-CCCeEEeCCcEEEEeCCC--c--EEEeCCCcEEEeccEEeccCCCCC
Q 011351 131 KE-KGIEMIYQDPVTSIDIEK--Q--TLITNSGKLLKYGSLIVATGCTAS 175 (488)
Q Consensus 131 ~~-~~i~~~~~~~v~~id~~~--~--~v~~~~g~~i~yd~lVlAtG~~~~ 175 (488)
.+ .|++++.+ +|++++.+. . .|++.+|.++.+|.||.|+|....
T Consensus 186 ~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~ 234 (526)
T 2pyx_A 186 TQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSL 234 (526)
T ss_dssp HHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCC
T ss_pred HhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchH
Confidence 45 79999998 699997642 2 566777777999999999998654
No 320
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=97.48 E-value=8e-05 Score=75.34 Aligned_cols=39 Identities=23% Similarity=0.180 Sum_probs=33.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 89 (488)
+++||+|||||++|+++|++|++.|. +.+|+|+|+++..
T Consensus 3 ~~~~v~IiGaG~~Gl~~A~~L~~~g~-~~~v~v~E~~~~~ 41 (475)
T 3lov_A 3 SSKRLVIVGGGITGLAAAYYAERAFP-DLNITLLEAGERL 41 (475)
T ss_dssp CSCEEEEECCBHHHHHHHHHHHHHCT-TSEEEEECSSSSS
T ss_pred CcccEEEECCCHHHHHHHHHHHHhCC-CCCEEEEECCCCC
Confidence 35799999999999999999999982 3489999997654
No 321
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=97.46 E-value=0.00014 Score=76.84 Aligned_cols=87 Identities=17% Similarity=0.288 Sum_probs=66.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc-----ccC-----HHHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LFT-----PSLAQRYEQLYQQNGVKFVKGASIKNLE 276 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~-----~~~-----~~~~~~~~~~l~~~GV~v~~~~~v~~i~ 276 (488)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+-.. .++ .+....+.+.+++.||++++++.++.
T Consensus 373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-- 450 (671)
T 1ps9_A 373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA-- 450 (671)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS--
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEecH--
Confidence 468999999999999999999999999999988654211 011 13345566778888999998875421
Q ss_pred eCCCCcEEEEEeCCCcEE-EcCEEEEeecCccCCh
Q 011351 277 AGSDGRVAAVKLEDGSTI-DADTIVIGIGAKPTVS 310 (488)
Q Consensus 277 ~~~~~~v~~v~l~~g~~i-~~D~vi~a~G~~p~~~ 310 (488)
..+ .+|.||+|||.+|...
T Consensus 451 ---------------~~~~~~d~lviAtG~~p~~~ 470 (671)
T 1ps9_A 451 ---------------DQLQAFDETILASGIVPRTP 470 (671)
T ss_dssp ---------------SSSCCSSEEEECCCEEECCC
T ss_pred ---------------HHhhcCCEEEEccCCCcCCC
Confidence 124 8999999999988753
No 322
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=97.45 E-value=0.00095 Score=67.90 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeecCccC
Q 011351 251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKPT 308 (488)
Q Consensus 251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~--~i~~D~vi~a~G~~p~ 308 (488)
+...+.+.+++.|++++.+++|+++..++ .+..|.+ .+|+ ++.+|.||.|+|....
T Consensus 151 l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~--~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~ 211 (501)
T 2qcu_A 151 LVLANAQMVVRKGGEVLTRTRATSARREN--GLWIVEAEDIDTGKKYSWQARGLVNATGPWVK 211 (501)
T ss_dssp HHHHHHHHHHHTTCEEECSEEEEEEEEET--TEEEEEEEETTTCCEEEEEESCEEECCGGGHH
T ss_pred HHHHHHHHHHHcCCEEEcCcEEEEEEEeC--CEEEEEEEECCCCCEEEEECCEEEECCChhHH
Confidence 34455666778899999999999998643 4556666 3565 7999999999998754
No 323
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=97.45 E-value=0.0014 Score=67.96 Aligned_cols=52 Identities=21% Similarity=0.222 Sum_probs=40.0
Q ss_pred HHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeecCc
Q 011351 255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 306 (488)
Q Consensus 255 ~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~--~i~~D~vi~a~G~~ 306 (488)
+.+.+++.||+++.++.++++..++++++.+|.. .+|+ ++.++.||+|+|-.
T Consensus 149 L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~ 205 (588)
T 2wdq_A 149 LYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGA 205 (588)
T ss_dssp HHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCC
T ss_pred HHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCC
Confidence 4455567799999999999998643567766664 4665 58999999999963
No 324
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=97.43 E-value=0.00012 Score=74.33 Aligned_cols=39 Identities=21% Similarity=0.173 Sum_probs=34.0
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 89 (488)
+++++|+|||||++|+++|..|++.|. .+|+|+|+++..
T Consensus 7 ~~~~~v~iiG~G~~Gl~~A~~l~~~g~--~~v~v~E~~~~~ 45 (484)
T 4dsg_A 7 LLTPKIVIIGAGPTGLGAAVRLTELGY--KNWHLYECNDTP 45 (484)
T ss_dssp CCSCCEEEECCSHHHHHHHHHHHHTTC--CSEEEEESSSSS
T ss_pred ccCCCEEEECcCHHHHHHHHHHHHcCC--CCEEEEeCCCCC
Confidence 456899999999999999999999872 289999998764
No 325
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=97.42 E-value=0.0001 Score=72.19 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=31.7
Q ss_pred CeEEEEcCchHHHHHHHHHHHc--CCCCCcEEEEcCCCCC
Q 011351 52 REFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAYA 89 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~--g~~~~~V~lie~~~~~ 89 (488)
++|+|||||++|+++|..|++. |. +|+|+|+.+..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~---~V~v~E~~~~~ 37 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLW---AIDIVEKNDEQ 37 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTS---EEEEECSSCTT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCC---CEEEEECCCCC
Confidence 4899999999999999999998 77 89999998654
No 326
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=97.41 E-value=0.0001 Score=74.61 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=32.8
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 89 (488)
..++||+|||||++|++||..|++.|+ +|+|+|+++..
T Consensus 14 ~~~~~v~iiG~G~~Gl~aa~~l~~~g~---~v~v~E~~~~~ 51 (478)
T 2ivd_A 14 TTGMNVAVVGGGISGLAVAHHLRSRGT---DAVLLESSARL 51 (478)
T ss_dssp ---CCEEEECCBHHHHHHHHHHHTTTC---CEEEECSSSSS
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCC---CEEEEEcCCCC
Confidence 456899999999999999999999987 89999998764
No 327
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=97.39 E-value=8.7e-05 Score=71.81 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=30.8
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCC---CCCcEEEEcCCC
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGM---ADGRLCIVSKEA 87 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~---~~~~V~lie~~~ 87 (488)
+||+|||||++|+++|++|+++|. ++.+|+|+|++.
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF 39 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence 489999999999999999999971 123899999986
No 328
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=97.39 E-value=0.001 Score=68.67 Aligned_cols=61 Identities=18% Similarity=0.147 Sum_probs=44.5
Q ss_pred HHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC---C--cEEEcCEEEEeecCccCChhhhhcC
Q 011351 254 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAKPTVSPFERVG 316 (488)
Q Consensus 254 ~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~---g--~~i~~D~vi~a~G~~p~~~~~~~~g 316 (488)
.+.+.+++.|++++++++|+++..+ ++++.+|.+.+ | .++.+|.||.|+|.... .+.+..+
T Consensus 175 ~L~~~a~~~G~~i~~~~~V~~l~~~-~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s~-~l~~~~g 240 (561)
T 3da1_A 175 EIMKEAVARGAVALNYMKVESFIYD-QGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVD-TLREKDR 240 (561)
T ss_dssp HHHHHHHHTTCEEEESEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEEEEEEECCGGGHH-HHHHTTT
T ss_pred HHHHHHHHcCCEEEcCCEEEEEEEc-CCeEEEEEEEEcCCCceEEEECCEEEECCCcchH-HHHHhcC
Confidence 3445567789999999999999864 56666677654 3 46899999999997653 3444443
No 329
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=97.38 E-value=0.00092 Score=67.42 Aligned_cols=97 Identities=19% Similarity=0.281 Sum_probs=70.2
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc----------c--------------------------------
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------L-------------------------------- 246 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~----------~-------------------------------- 246 (488)
.|+|||+|..|+-+|..|++.|.+|+++++.. .... .
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~~-~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~ 79 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKRI-DGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTS 79 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSST-TCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC-CCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence 37999999999999999999999999998761 0000 0
Q ss_pred ---------------c----------------------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC
Q 011351 247 ---------------F----------------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 289 (488)
Q Consensus 247 ---------------~----------------------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~ 289 (488)
+ ...+...+.+.+++.||+++.++.+ ++..+ ++++.++...
T Consensus 80 ~~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~-~~~v~Gv~v~ 157 (472)
T 2e5v_A 80 EAKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRVK-DGKVTGFVTE 157 (472)
T ss_dssp HHHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEEE-TTEEEEEEET
T ss_pred HHHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEEe-CCEEEEEEEE
Confidence 0 0123444555567789999999999 98754 4666666553
Q ss_pred -CCcEEEcCEEEEeecCccC
Q 011351 290 -DGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 290 -~g~~i~~D~vi~a~G~~p~ 308 (488)
++.++.+|.||+|+|..+.
T Consensus 158 ~~~g~~~a~~VVlAtGg~~~ 177 (472)
T 2e5v_A 158 KRGLVEDVDKLVLATGGYSY 177 (472)
T ss_dssp TTEEECCCSEEEECCCCCGG
T ss_pred eCCCeEEeeeEEECCCCCcc
Confidence 2335789999999998764
No 330
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=97.37 E-value=0.00013 Score=74.37 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=33.8
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 90 (488)
++++|+|||||++||+||..|++.|+ +|+|+|+++...
T Consensus 12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~---~v~v~E~~~~~G 49 (504)
T 1sez_A 12 SAKRVAVIGAGVSGLAAAYKLKIHGL---NVTVFEAEGKAG 49 (504)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHTTSC---EEEEECSSSSSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC---cEEEEEeCCCCC
Confidence 45899999999999999999999987 899999997653
No 331
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=97.34 E-value=0.00017 Score=73.35 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=34.2
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 89 (488)
..+++|+|||||++|++||..|++.|. +|+|+|+.+..
T Consensus 31 ~~~~~v~IiGaG~~Gl~aA~~l~~~g~---~v~vlE~~~~~ 68 (498)
T 2iid_A 31 SNPKHVVIVGAGMAGLSAAYVLAGAGH---QVTVLEASERP 68 (498)
T ss_dssp SSCCEEEEECCBHHHHHHHHHHHHHTC---EEEEECSSSSS
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCC---eEEEEECCCCC
Confidence 446899999999999999999999987 89999998754
No 332
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=97.33 E-value=0.00015 Score=73.77 Aligned_cols=56 Identities=20% Similarity=0.323 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHcC-cEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351 249 PSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 306 (488)
Q Consensus 249 ~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~ 306 (488)
..+.+.+.+.+++.| +++++++.|++|+..+ +.+ .|.+.+|+++.+|.||+|+|..
T Consensus 255 ~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~-~~v-~v~~~~g~~~~ad~vI~a~~~~ 311 (495)
T 2vvm_A 255 SAFARRFWEEAAGTGRLGYVFGCPVRSVVNER-DAA-RVTARDGREFVAKRVVCTIPLN 311 (495)
T ss_dssp HHHHHHHHHHHHTTTCEEEESSCCEEEEEECS-SSE-EEEETTCCEEEEEEEEECCCGG
T ss_pred HHHHHHHHHHhhhcCceEEEeCCEEEEEEEcC-CEE-EEEECCCCEEEcCEEEECCCHH
Confidence 356777778888888 9999999999998653 334 5788888889999999999963
No 333
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=97.33 E-value=0.00016 Score=70.90 Aligned_cols=37 Identities=22% Similarity=0.444 Sum_probs=33.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 90 (488)
+++|+|||||++|+++|..|++.|. +|+|+|+++...
T Consensus 3 ~~~v~iiG~G~~Gl~~A~~l~~~g~---~v~v~E~~~~~G 39 (384)
T 2bi7_A 3 SKKILIVGAGFSGAVIGRQLAEKGH---QVHIIDQRDHIG 39 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTC---EEEEEESSSSSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCC---cEEEEEecCCcC
Confidence 4799999999999999999999876 899999987653
No 334
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=97.30 E-value=0.00021 Score=68.83 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=32.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
++||+|||||+||+.||..|++.|. +|+|+|+.+.
T Consensus 1 m~dViVIGgG~AG~~AA~~la~~G~---~V~liE~~~~ 35 (443)
T 3g5s_A 1 MERVNVVGAGLAGSEAAWTLLRLGV---PVRLFEMRPK 35 (443)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTC---CEEEECCTTT
T ss_pred CCCEEEECchHHHHHHHHHHHHCCC---cEEEEeccCC
Confidence 3689999999999999999999987 8999998864
No 335
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=97.26 E-value=0.00019 Score=70.02 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=32.1
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 89 (488)
+||+|||||++|+++|..|++.|. +|+|+|+++..
T Consensus 2 ~~v~iiG~G~~Gl~~A~~l~~~g~---~v~v~E~~~~~ 36 (367)
T 1i8t_A 2 YDYIIVGSGLFGAVCANELKKLNK---KVLVIEKRNHI 36 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTC---CEEEECSSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCC---cEEEEecCCCC
Confidence 589999999999999999999987 89999998754
No 336
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=97.24 E-value=0.00018 Score=76.66 Aligned_cols=98 Identities=19% Similarity=0.212 Sum_probs=69.2
Q ss_pred CCCeEEEEc--CchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCH
Q 011351 50 ENREFVIVG--GGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (488)
Q Consensus 50 ~~~~vvIIG--gG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (488)
..++|+||| ||..|+.+|..|++.|. +|+|+++.+ ..- ....+.. .....
T Consensus 527 ~gk~VvVIG~GgG~~g~e~A~~l~~~G~---~Vtlv~~~~-l~~-------~~~~~~~-----------------~~~~~ 578 (729)
T 1o94_A 527 IGKRVVILNADTYFMAPSLAEKLATAGH---EVTIVSGVH-LAN-------YMHFTLE-----------------YPNMM 578 (729)
T ss_dssp CCSEEEEEECCCSSHHHHHHHHHHHTTC---EEEEEESSC-TTH-------HHHHTTC-----------------HHHHH
T ss_pred CCCeEEEEcCCCCchHHHHHHHHHHcCC---EEEEEeccc-ccc-------ccccccc-----------------HHHHH
Confidence 357999999 99999999999999986 899999875 210 0000000 01234
Q ss_pred hHHHHCCCeEEeCCcEEEEeCCCcEEEe--CCC-cE------------------EEeccEEeccCCCCC
Q 011351 128 EWYKEKGIEMIYQDPVTSIDIEKQTLIT--NSG-KL------------------LKYGSLIVATGCTAS 175 (488)
Q Consensus 128 ~~~~~~~i~~~~~~~v~~id~~~~~v~~--~~g-~~------------------i~yd~lVlAtG~~~~ 175 (488)
+.+++.||+++.++.+.+++.+...+.. .++ +. +.+|.||+|+|..|.
T Consensus 579 ~~l~~~GV~i~~~~~v~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~ 647 (729)
T 1o94_A 579 RRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSE 647 (729)
T ss_dssp HHHHHTTCEEECSEEEEEEETTEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEEC
T ss_pred HHHHhCCCEEEcCcEEEEEECCeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCC
Confidence 5667889999999999999865433332 232 32 899999999997654
No 337
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=97.23 E-value=0.00026 Score=69.40 Aligned_cols=87 Identities=15% Similarity=0.193 Sum_probs=67.4
Q ss_pred eEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCcC----------------------c-cc------------------
Q 011351 209 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHL----------------------L-QR------------------ 245 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~--g~~v~lv~~~~~~----------------------l-~~------------------ 245 (488)
+|+|||+|+.|+.+|..|++. |.+|+++++.+.+ . ..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (381)
T 3c4a_A 2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHHN 81 (381)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEESS
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeCC
Confidence 689999999999999999998 9999999987543 0 00
Q ss_pred -------------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 246 -------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 246 -------------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
.....+.+.+.+.+++.|++++++++|++++.. +++.+|.||.|.|....
T Consensus 82 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-------------~~~~ad~vV~AdG~~S~ 144 (381)
T 3c4a_A 82 EPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL-------------PLADYDLVVLANGVNHK 144 (381)
T ss_dssp SEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC-------------CGGGCSEEEECCGGGGG
T ss_pred eeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc-------------ccccCCEEEECCCCCch
Confidence 001345677777788889999999988877521 13689999999998653
No 338
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=97.21 E-value=0.0015 Score=68.44 Aligned_cols=100 Identities=19% Similarity=0.267 Sum_probs=73.5
Q ss_pred CeEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCcCcc------------------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVG-WKLDTTIIFPENHLLQ------------------------------------------ 244 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~-~g~~v~lv~~~~~~l~------------------------------------------ 244 (488)
..|+|||+|+.|+-+|..|++ .|.+|+++++.+.+..
T Consensus 33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~~~ 112 (639)
T 2dkh_A 33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPDPG 112 (639)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEECTT
T ss_pred CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCCCC
Confidence 369999999999999999999 9999999987632100
Q ss_pred --c---------------------ccC-HHHHHHHHHHHHHcCc--EEEcCCeEEEEEeCCC--CcEEEEEeC------C
Q 011351 245 --R---------------------LFT-PSLAQRYEQLYQQNGV--KFVKGASIKNLEAGSD--GRVAAVKLE------D 290 (488)
Q Consensus 245 --~---------------------~~~-~~~~~~~~~~l~~~GV--~v~~~~~v~~i~~~~~--~~v~~v~l~------~ 290 (488)
. .++ ..+.+.+.+.+++.|+ ++++++++++++.+++ +..+.+.+. +
T Consensus 113 ~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~ 192 (639)
T 2dkh_A 113 QPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHA 192 (639)
T ss_dssp STTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGT
T ss_pred CCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCC
Confidence 0 000 1455667777888876 9999999999987542 212245544 4
Q ss_pred C--cEEEcCEEEEeecCcc
Q 011351 291 G--STIDADTIVIGIGAKP 307 (488)
Q Consensus 291 g--~~i~~D~vi~a~G~~p 307 (488)
| +++.+|+||.|.|...
T Consensus 193 G~~~~i~a~~vVgADG~~S 211 (639)
T 2dkh_A 193 GQIETVQARYVVGCDGARS 211 (639)
T ss_dssp TCEEEEEEEEEEECCCTTC
T ss_pred CCeEEEEeCEEEECCCcch
Confidence 6 4799999999999764
No 339
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=97.13 E-value=0.0022 Score=66.68 Aligned_cols=96 Identities=19% Similarity=0.249 Sum_probs=70.0
Q ss_pred eEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCcCccc------------------------------c----------
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQR------------------------------L---------- 246 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g--~~v~lv~~~~~~l~~------------------------------~---------- 246 (488)
.|+|||+|..|+-+|..|++.| .+|+++++.+..... .
T Consensus 7 DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~~~ 86 (602)
T 1kf6_A 7 DLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYF 86 (602)
T ss_dssp SEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 5999999999999999999999 999999876321000 0
Q ss_pred -----------------c----------------------------CHHHHHHHHHHHHHcC-cEEEcCCeEEEEEeCCC
Q 011351 247 -----------------F----------------------------TPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSD 280 (488)
Q Consensus 247 -----------------~----------------------------~~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~ 280 (488)
+ +..+...+.+.+++.| |+++.++.++++..+ +
T Consensus 87 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~-~ 165 (602)
T 1kf6_A 87 VHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVD-D 165 (602)
T ss_dssp HHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEEE-T
T ss_pred HHHHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEe-C
Confidence 0 0123334445556677 999999999999864 5
Q ss_pred CcEEEEEe---CCCc--EEEcCEEEEeecC
Q 011351 281 GRVAAVKL---EDGS--TIDADTIVIGIGA 305 (488)
Q Consensus 281 ~~v~~v~l---~~g~--~i~~D~vi~a~G~ 305 (488)
+++.++.. .+|+ .+.++.||+|+|.
T Consensus 166 g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg 195 (602)
T 1kf6_A 166 GHVRGLVAMNMMEGTLVQIRANAVVMATGG 195 (602)
T ss_dssp TEEEEEEEEETTTTEEEEEECSCEEECCCC
T ss_pred CEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence 66655543 5776 6899999999994
No 340
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=97.13 E-value=0.00041 Score=69.20 Aligned_cols=58 Identities=17% Similarity=0.350 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
..+.+.+.+.+++.|+++++++.|++|... ++++..+. .+|+++.||.||+++|..+.
T Consensus 234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~-~~~v~~v~-~~g~~~~ad~VV~a~~~~~~ 291 (433)
T 1d5t_A 234 GELPQGFARLSAIYGGTYMLNKPVDDIIME-NGKVVGVK-SEGEVARCKQLICDPSYVPD 291 (433)
T ss_dssp THHHHHHHHHHHHHTCCCBCSCCCCEEEEE-TTEEEEEE-ETTEEEECSEEEECGGGCGG
T ss_pred HHHHHHHHHHHHHcCCEEECCCEEEEEEEe-CCEEEEEE-ECCeEEECCEEEECCCCCcc
Confidence 467778888888999999999999999864 46665555 47888999999999998864
No 341
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=97.10 E-value=0.00024 Score=73.48 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEeecCcc
Q 011351 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAKP 307 (488)
Q Consensus 248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~---~g~--~i~~D~vi~a~G~~p 307 (488)
+..+...+.+.+++.|++++.+++|+++..+ ++.+.+|.+. +|+ ++.+|.||+|+|...
T Consensus 187 ~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~-~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws 250 (571)
T 2rgh_A 187 DARLVIDNIKKAAEDGAYLVSKMKAVGFLYE-GDQIVGVKARDLLTDEVIEIKAKLVINTSGPWV 250 (571)
T ss_dssp HHHHHHHHHHHHHHTTCEEESSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEBSCEEECCGGGH
T ss_pred hHHHHHHHHHHHHHcCCeEEeccEEEEEEEe-CCEEEEEEEEEcCCCCEEEEEcCEEEECCChhH
Confidence 3455666667788899999999999999865 4566666653 343 699999999999764
No 342
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=97.07 E-value=0.0028 Score=65.20 Aligned_cols=95 Identities=19% Similarity=0.303 Sum_probs=67.9
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc-------------------------------------------
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------- 244 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~------------------------------------------- 244 (488)
..|+|||+|+.|+-+|..|++.|.+|+++++.+.+..
T Consensus 27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 106 (549)
T 2r0c_A 27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTRV 106 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESSB
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEeccC
Confidence 3699999999999999999999999999997632210
Q ss_pred -c-c---c---------------------C-HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC---C--c
Q 011351 245 -R-L---F---------------------T-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---G--S 292 (488)
Q Consensus 245 -~-~---~---------------------~-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~---g--~ 292 (488)
. . + + ..+.+.+.+.+++. +++++++++++.++++ + .+++.+ | +
T Consensus 107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~-v-~v~~~~~~~G~~~ 181 (549)
T 2r0c_A 107 GGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDDH-V-RATITDLRTGATR 181 (549)
T ss_dssp TSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEECSSC-E-EEEEEETTTCCEE
T ss_pred CCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCCE-E-EEEEEECCCCCEE
Confidence 0 0 0 0 12334455555554 8899999999876444 3 355544 6 4
Q ss_pred EEEcCEEEEeecCcc
Q 011351 293 TIDADTIVIGIGAKP 307 (488)
Q Consensus 293 ~i~~D~vi~a~G~~p 307 (488)
++.+|+||.|.|...
T Consensus 182 ~i~a~~vVgADG~~S 196 (549)
T 2r0c_A 182 AVHARYLVACDGASS 196 (549)
T ss_dssp EEEEEEEEECCCTTC
T ss_pred EEEeCEEEECCCCCc
Confidence 799999999999865
No 343
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=97.03 E-value=0.00048 Score=68.99 Aligned_cols=58 Identities=16% Similarity=0.315 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 306 (488)
Q Consensus 249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~ 306 (488)
.++.+.+.+.+++.|+++++++.|++|..++++++.+|.+.+|+++.||.||++++..
T Consensus 256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~ 313 (475)
T 3p1w_A 256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV 313 (475)
T ss_dssp THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence 4778888899999999999999999998745778889999999999999999999988
No 344
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=97.03 E-value=0.00027 Score=74.05 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=32.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCC-----CCCcEEEEcCCC-CC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGM-----ADGRLCIVSKEA-YA 89 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~-----~~~~V~lie~~~-~~ 89 (488)
.++|+|||||++||+||..|.+.|. +..+|+|+|+++ ..
T Consensus 56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~ 100 (721)
T 3ayj_A 56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF 100 (721)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence 4789999999999999999999871 013899999987 54
No 345
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=96.97 E-value=0.0081 Score=61.98 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=31.7
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~ 240 (488)
....|+|||||.+|+-+|..|+++|.+|+++++.+
T Consensus 31 ~~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~ 65 (571)
T 2rgh_A 31 EELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQD 65 (571)
T ss_dssp SCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 44679999999999999999999999999999764
No 346
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=96.97 E-value=0.002 Score=66.06 Aligned_cols=32 Identities=16% Similarity=0.329 Sum_probs=29.3
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~ 240 (488)
-.|+|||+|..|+-+|..+++ |.+|+++++.+
T Consensus 9 ~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~ 40 (540)
T 1chu_A 9 CDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGP 40 (540)
T ss_dssp CSEEEECCSHHHHHHHHHHTT-TSCEEEECSSC
T ss_pred CCEEEECccHHHHHHHHHHhc-CCcEEEEECCC
Confidence 369999999999999999999 99999998875
No 347
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=96.96 E-value=0.00042 Score=72.75 Aligned_cols=36 Identities=28% Similarity=0.450 Sum_probs=31.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHH---H-cCCCCCcEEEEcCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFV---E-HGMADGRLCIVSKEAY 88 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~---~-~g~~~~~V~lie~~~~ 88 (488)
..+||||||||+||++||.+|+ + .|. +|+||||.+.
T Consensus 21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~---~V~vlEK~~~ 60 (643)
T 1jnr_A 21 VETDILIIGGGFSGCGAAYEAAYWAKLGGL---KVTLVEKAAV 60 (643)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHTTTTC---CEEEECSSCT
T ss_pred ccCCEEEECcCHHHHHHHHHHhhhhhhCCC---eEEEEeCcCC
Confidence 3579999999999999999999 5 776 8999999864
No 348
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=96.95 E-value=0.0053 Score=63.83 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=38.1
Q ss_pred HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeecCcc
Q 011351 256 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP 307 (488)
Q Consensus 256 ~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~--~i~~D~vi~a~G~~p 307 (488)
.+.+.+.||+++.++.++++..+ ++++.+|.. .+|+ .+.++.||+|+|-..
T Consensus 162 ~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~ 217 (621)
T 2h88_A 162 YGRSLRYDTSYFVEYFALDLLME-NGECRGVIALCIEDGTIHRFRAKNTVIATGGYG 217 (621)
T ss_dssp HHHHTTSCCEEEETEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred HHHHHhCCCEEEEceEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 33445578999999999999754 567766665 4675 689999999999643
No 349
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=96.92 E-value=0.00078 Score=70.99 Aligned_cols=38 Identities=21% Similarity=0.389 Sum_probs=34.3
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 89 (488)
...++|+|||||++|+++|..|.+.|+ +|+|+|+.+..
T Consensus 105 ~~~~~v~viG~G~~gl~~a~~l~~~g~---~v~~~e~~~~~ 142 (662)
T 2z3y_A 105 KKTGKVIIIGSGVSGLAAARQLQSFGM---DVTLLEARDRV 142 (662)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTTC---EEEEECSSSSS
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC---eEEEEecCCCC
Confidence 456899999999999999999999987 89999998764
No 350
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=96.87 E-value=0.00097 Score=71.76 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=34.7
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 90 (488)
...++|+|||||++||+||..|++.|+ +|+|+|+.+...
T Consensus 276 ~~~~~v~viG~G~aGl~~A~~l~~~g~---~v~v~E~~~~~G 314 (852)
T 2xag_A 276 KKTGKVIIIGSGVSGLAAARQLQSFGM---DVTLLEARDRVG 314 (852)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCC---cEEEEEecCcCC
Confidence 456899999999999999999999988 899999987643
No 351
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=96.80 E-value=0.0016 Score=66.26 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=28.5
Q ss_pred eEEEECCCHHHHHHHHHHHh-CCCcEEEEecC
Q 011351 209 KVVVVGGGYIGMEVAAAAVG-WKLDTTIIFPE 239 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~-~g~~v~lv~~~ 239 (488)
.|+|||+|++|+-+|..|++ .|.+|+|++.+
T Consensus 12 DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~ 43 (513)
T 4gde_A 12 DVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSN 43 (513)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCCSCEEEEESS
T ss_pred CEEEECCcHHHHHHHHHHHhhCCCCEEEEECC
Confidence 59999999999999999987 59999999977
No 352
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=96.76 E-value=0.011 Score=61.83 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=38.1
Q ss_pred HHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeecCc
Q 011351 255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 306 (488)
Q Consensus 255 ~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~--~i~~D~vi~a~G~~ 306 (488)
+.+.+++.||+++.++.++++..+ ++++.++.. .+|+ .+.+|.||+|+|-.
T Consensus 164 L~~~a~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~ 219 (660)
T 2bs2_A 164 VANECLKLGVSIQDRKEAIALIHQ-DGKCYGAVVRDLVTGDIIAYVAKGTLIATGGY 219 (660)
T ss_dssp HHHHHHHHTCEEECSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEECSEEEECCCCC
T ss_pred HHHHHHhCCCEEEECcEEEEEEec-CCEEEEEEEEECCCCcEEEEEcCEEEEccCcc
Confidence 344456679999999999999753 566666654 4676 48999999999853
No 353
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=96.66 E-value=0.0016 Score=65.73 Aligned_cols=41 Identities=22% Similarity=0.368 Sum_probs=34.7
Q ss_pred CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC
Q 011351 263 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 305 (488)
Q Consensus 263 GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~ 305 (488)
|.++++++.|++|+..+ +.+ .|.+.+|+++.+|.||+|++.
T Consensus 228 ~~~i~~~~~V~~i~~~~-~~v-~v~~~~g~~~~ad~vI~a~~~ 268 (472)
T 1b37_A 228 DPRLQLNKVVREIKYSP-GGV-TVKTEDNSVYSADYVMVSASL 268 (472)
T ss_dssp CTTEESSCCEEEEEECS-SCE-EEEETTSCEEEESEEEECSCH
T ss_pred ccEEEcCCEEEEEEEcC-CcE-EEEECCCCEEEcCEEEEecCH
Confidence 67899999999998754 444 488899989999999999875
No 354
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Probab=96.59 E-value=0.012 Score=61.99 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=29.3
Q ss_pred eEEEECCCHHHHHHHHHHHh-----CCCcEEEEecC
Q 011351 209 KVVVVGGGYIGMEVAAAAVG-----WKLDTTIIFPE 239 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~-----~g~~v~lv~~~ 239 (488)
.|+|||+|+.|+-+|..|++ .|.+|+++++.
T Consensus 10 dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~ 45 (665)
T 1pn0_A 10 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKR 45 (665)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSS
T ss_pred cEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCC
Confidence 69999999999999999999 99999999875
No 355
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*
Probab=96.56 E-value=0.0017 Score=66.77 Aligned_cols=64 Identities=16% Similarity=0.272 Sum_probs=47.9
Q ss_pred HHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC---Cc--EE---EcCEEEEeecCccCChhhhhcCCc
Q 011351 254 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GS--TI---DADTIVIGIGAKPTVSPFERVGLN 318 (488)
Q Consensus 254 ~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~---g~--~i---~~D~vi~a~G~~p~~~~~~~~gl~ 318 (488)
++....++.|+++++++.|+++..+ ++++.+|.+.+ |+ ++ .++.||+|+|......++..+|+.
T Consensus 201 ~l~~~~~~~~~~i~~~~~V~~i~~~-~~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~lL~~sGig 272 (546)
T 1kdg_A 201 YLQTALARPNFTFKTNVMVSNVVRN-GSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIG 272 (546)
T ss_dssp HHHHHHTCTTEEEECSCCEEEEEEE-TTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHHTTBS
T ss_pred HHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCHHHHHHcCCC
Confidence 4444444469999999999999864 56788888865 64 34 889999999987655777777764
No 356
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=96.55 E-value=0.017 Score=61.58 Aligned_cols=42 Identities=17% Similarity=0.374 Sum_probs=34.9
Q ss_pred cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC
Q 011351 262 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 305 (488)
Q Consensus 262 ~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~ 305 (488)
.|++|++++.|++|+..++ .+ .|.+.+|+++.+|.||+|+..
T Consensus 542 ~gl~I~l~t~V~~I~~~~~-~v-~V~~~~G~~i~Ad~VIvA~P~ 583 (776)
T 4gut_A 542 EGLDIQLKSPVQCIDYSGD-EV-QVTTTDGTGYSAQKVLVTVPL 583 (776)
T ss_dssp TTSCEESSCCEEEEECSSS-SE-EEEETTCCEEEESEEEECCCH
T ss_pred hCCcEEcCCeeEEEEEcCC-EE-EEEECCCcEEEcCEEEECCCH
Confidence 3789999999999986544 34 588889989999999999864
No 357
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=96.50 E-value=0.014 Score=58.33 Aligned_cols=35 Identities=29% Similarity=0.425 Sum_probs=31.9
Q ss_pred CeEEEECCCHHHHHHHHHHHhCC------CcEEEEecCCcC
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWK------LDTTIIFPENHL 242 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g------~~v~lv~~~~~~ 242 (488)
++|+|||+|.+|+-+|..|.+.| .+|+++++.+++
T Consensus 6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~ 46 (470)
T 3i6d_A 6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRV 46 (470)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCC
Confidence 57999999999999999999999 899999987554
No 358
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*
Probab=96.46 E-value=0.0011 Score=67.84 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=43.0
Q ss_pred HHHcCcEEEcCCeEEEEEeCCC--CcEEEEEeC--CCc--EE---EcCEEEEeecCccCChhhhhcCC
Q 011351 259 YQQNGVKFVKGASIKNLEAGSD--GRVAAVKLE--DGS--TI---DADTIVIGIGAKPTVSPFERVGL 317 (488)
Q Consensus 259 l~~~GV~v~~~~~v~~i~~~~~--~~v~~v~l~--~g~--~i---~~D~vi~a~G~~p~~~~~~~~gl 317 (488)
.++.|+++++++.|+++..+++ +++.+|... +|+ ++ .++.||+|+|.-.+..++..+|+
T Consensus 204 ~~~~~~~v~~~~~v~~i~~~~~~~~~~~GV~~~~~~g~~~~~~v~a~k~VILaaGa~~sp~lL~~SGi 271 (536)
T 1ju2_A 204 GNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGV 271 (536)
T ss_dssp SCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTSCEEEEEEEEEEEEEECCHHHHHHHHHHHTTE
T ss_pred hcCCCcEEEeCCEEEEEEECCCCCCEEEEEEEEeCCCceEEEEeccCCEEEEcCcccCCHHHHHHcCC
Confidence 4577999999999999986543 478788774 465 34 57899999997654456655554
No 359
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=96.40 E-value=0.023 Score=59.52 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=36.8
Q ss_pred HHHHc-Cc-EEEcCCeEEEEEeCCC--CcEEEEEe---CCCc--EEEcCEEEEeecCc
Q 011351 258 LYQQN-GV-KFVKGASIKNLEAGSD--GRVAAVKL---EDGS--TIDADTIVIGIGAK 306 (488)
Q Consensus 258 ~l~~~-GV-~v~~~~~v~~i~~~~~--~~v~~v~l---~~g~--~i~~D~vi~a~G~~ 306 (488)
.+++. || +++.++.++++..+++ +++.+|.. .+|+ .+.++.||+|+|-.
T Consensus 160 ~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~ 217 (643)
T 1jnr_A 160 AAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGA 217 (643)
T ss_dssp HHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCB
T ss_pred HHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCcc
Confidence 34455 89 9999999999986533 27777653 5665 58999999999964
No 360
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=96.25 E-value=0.0023 Score=65.42 Aligned_cols=58 Identities=19% Similarity=0.367 Sum_probs=42.8
Q ss_pred HHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC---cEEEcCEEEEeecCccCChhhhhcCCc
Q 011351 260 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSPFERVGLN 318 (488)
Q Consensus 260 ~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g---~~i~~D~vi~a~G~~p~~~~~~~~gl~ 318 (488)
.+.++.+..++.+.++..+ ++++++|...+. .++.++.||+|.|.--...+|..+|+.
T Consensus 222 ~r~nl~v~~~~~v~~i~~~-~~~a~gv~~~~~~~~~~~~a~~VILsAGai~SP~LLl~SGig 282 (526)
T 3t37_A 222 GRKNLTILTGSRVRRLKLE-GNQVRSLEVVGRQGSAEVFADQIVLCAGALESPALLMRSGIG 282 (526)
T ss_dssp TCTTEEEECSCEEEEEEEE-TTEEEEEEEEETTEEEEEEEEEEEECSHHHHHHHHHHHTTEE
T ss_pred CCCCeEEEeCCEEEEEEec-CCeEEEEEEEecCceEEEeecceEEcccccCCcchhhhccCC
Confidence 3568999999999999864 566666655432 257889999999986655677776653
No 361
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}
Probab=96.23 E-value=0.0025 Score=65.68 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=41.7
Q ss_pred HHcCcEEEcCCeEEEEEeCC-CCcEEEEEeC--CCc--EEEc-CEEEEeecCccCChhhhhcCC
Q 011351 260 QQNGVKFVKGASIKNLEAGS-DGRVAAVKLE--DGS--TIDA-DTIVIGIGAKPTVSPFERVGL 317 (488)
Q Consensus 260 ~~~GV~v~~~~~v~~i~~~~-~~~v~~v~l~--~g~--~i~~-D~vi~a~G~~p~~~~~~~~gl 317 (488)
++.|+++++++.++++.-++ ++++++|++. +|+ ++.+ ..||+|+|.-....+|..+|+
T Consensus 217 ~r~Nl~v~~~a~v~ri~~~~~~~~a~GV~~~~~~g~~~~v~A~keVILsaGa~~sp~lL~~SGI 280 (577)
T 3q9t_A 217 NKPNITIVPEVHSKRLIINEADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGI 280 (577)
T ss_dssp SCTTEEEECSEEEEEEEEETTTTEEEEEEEEETTSCEEEEEEEEEEEECSHHHHHHHHHHHTTE
T ss_pred cCCCeEEEcCcEEEEEEEeCCCCEEEEEEEEeCCCcEEEEEeeeEEEEcccccCChHHHHHcCC
Confidence 45699999999999997643 5677788774 354 4566 569999997655455555554
No 362
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=96.10 E-value=0.019 Score=60.17 Aligned_cols=51 Identities=14% Similarity=0.208 Sum_probs=36.9
Q ss_pred HHHHHHHc--CcEEEcCCeEEEEEeCCC--CcEEEEEe---CCCc--EEEcCEEEEeecC
Q 011351 255 YEQLYQQN--GVKFVKGASIKNLEAGSD--GRVAAVKL---EDGS--TIDADTIVIGIGA 305 (488)
Q Consensus 255 ~~~~l~~~--GV~v~~~~~v~~i~~~~~--~~v~~v~l---~~g~--~i~~D~vi~a~G~ 305 (488)
+.+.+++. ||+++.++.+.++..+++ +++.++.. .+|+ .+.++.||+|||-
T Consensus 172 L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG 231 (662)
T 3gyx_A 172 VAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGG 231 (662)
T ss_dssp HHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCC
T ss_pred HHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCc
Confidence 34445555 899999998888876544 37777754 4554 5899999999994
No 363
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Probab=95.98 E-value=0.004 Score=64.13 Aligned_cols=66 Identities=15% Similarity=0.309 Sum_probs=46.6
Q ss_pred HHHHHHHHHHcCcEEEcCCeEEEEEeCC---CCcEEEEEeC--CCc--EEEcC-EEEEeecCccCChhhhhcCC
Q 011351 252 AQRYEQLYQQNGVKFVKGASIKNLEAGS---DGRVAAVKLE--DGS--TIDAD-TIVIGIGAKPTVSPFERVGL 317 (488)
Q Consensus 252 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~---~~~v~~v~l~--~g~--~i~~D-~vi~a~G~~p~~~~~~~~gl 317 (488)
..++...+++.+++|++++.|++|.-++ ++++++|++. +|+ ++.+. -||+|+|.--...+|.-+|+
T Consensus 230 ~ayL~p~~~r~NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~SPqLL~lSGI 303 (583)
T 3qvp_A 230 REWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGI 303 (583)
T ss_dssp HHHTTTTTTCTTEEEECSCEEEEEEEECSSSSCEEEEEEEESSTTCEEEEEEEEEEEECSCTTTHHHHHHHTTB
T ss_pred HHHHHHhhcCCCcEEEcCCEEEEEEeccCCCCCEEEEEEEEecCCcEEEEEECCEEEEeCCccCCHHHHHHcCC
Confidence 3344444567899999999999997543 5678888774 564 46776 69999998655455555544
No 364
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=95.96 E-value=0.039 Score=55.91 Aligned_cols=61 Identities=16% Similarity=0.186 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCC------cEEEEEeCCC-----cEEEcCEEEEeecCccCCh
Q 011351 250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG------RVAAVKLEDG-----STIDADTIVIGIGAKPTVS 310 (488)
Q Consensus 250 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~------~v~~v~l~~g-----~~i~~D~vi~a~G~~p~~~ 310 (488)
++.++++...++.+..+.++++|++++..+.+ ....|...++ +++.|+.||+|+|..|...
T Consensus 146 E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~~P~iP 217 (501)
T 4b63_A 146 EFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGGTAKMP 217 (501)
T ss_dssp HHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCCEECCC
T ss_pred HHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCCCCCCC
Confidence 45666666667777789999999999864332 1234555433 3588999999999888754
No 365
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Probab=95.95 E-value=0.0054 Score=62.29 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=43.3
Q ss_pred HHHc-CcEEEcCCeEEEEEeCCCC-cEEEEEeC--CC-----cEEEcCEEEEeecCccCChhhhhcC
Q 011351 259 YQQN-GVKFVKGASIKNLEAGSDG-RVAAVKLE--DG-----STIDADTIVIGIGAKPTVSPFERVG 316 (488)
Q Consensus 259 l~~~-GV~v~~~~~v~~i~~~~~~-~v~~v~l~--~g-----~~i~~D~vi~a~G~~p~~~~~~~~g 316 (488)
.+++ +++|++++.|++|..++++ ++++|... +| .++.++.||+|+|.-....+|..+|
T Consensus 231 a~~~~n~~i~~~~~V~~i~~~~~g~~~~gV~~~~~~g~~~~~~~v~A~~VIlaaG~~~s~~lL~~Sg 297 (504)
T 1n4w_A 231 ALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVRAR 297 (504)
T ss_dssp HHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHHHHHHHHHH
T ss_pred HHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCccceeEEEeeCEEEEccCCCCCHHHHHhcc
Confidence 3445 5999999999999875434 67888774 56 3688999999999865446666555
No 366
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*
Probab=95.84 E-value=0.0066 Score=61.71 Aligned_cols=63 Identities=10% Similarity=0.133 Sum_probs=44.9
Q ss_pred HHHHHHHHcCcEEEcCCeEEEEEeCCCC-cEEEEEeC--CC-----cEEEcCEEEEeecCccCChhhhhcC
Q 011351 254 RYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLE--DG-----STIDADTIVIGIGAKPTVSPFERVG 316 (488)
Q Consensus 254 ~~~~~l~~~GV~v~~~~~v~~i~~~~~~-~v~~v~l~--~g-----~~i~~D~vi~a~G~~p~~~~~~~~g 316 (488)
++....+..++++++++.|++|..++++ ++++|... +| .++.++.||+|+|.-....+|..+|
T Consensus 232 ~l~~a~~~~n~~i~~~~~v~~i~~~~~g~~~~gV~~~~~~g~~~~~~~~~A~~VIlaaGa~~sp~lL~~Sg 302 (507)
T 1coy_A 232 YLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLLVSMK 302 (507)
T ss_dssp HHHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCcccccEEEEeCEEEEccCccCCHHHHHhcc
Confidence 3333334446999999999999876444 67788774 55 3688999999999865446665555
No 367
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=95.80 E-value=0.018 Score=57.48 Aligned_cols=40 Identities=15% Similarity=0.336 Sum_probs=35.6
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 90 (488)
++..+||+|||+|++|+++|..|++.|. +|+++|+++...
T Consensus 17 ~~~~~dv~iiG~G~~g~~~a~~l~~~g~---~v~~~e~~~~~G 56 (475)
T 3p1w_A 17 QGEHYDVIILGTGLKECILSGLLSHYGK---KILVLDRNPYYG 56 (475)
T ss_dssp CCCEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSC
T ss_pred ccccCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeccCCCC
Confidence 3456899999999999999999999987 899999998654
No 368
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=95.78 E-value=0.0092 Score=54.51 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=31.8
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~ 242 (488)
.|+|||+|+.|+-+|..|++.|.+|+|+++.+.+
T Consensus 4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~ 37 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS 37 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 5999999999999999999999999999988765
No 369
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=95.75 E-value=0.0099 Score=59.39 Aligned_cols=82 Identities=21% Similarity=0.125 Sum_probs=60.2
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 285 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~ 285 (488)
.+++++|+|.|.+|+-+|..|.++|.+|++.+..+... + ...+.|++.||+++.+....++
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~----~-----~~~~~L~~~gi~~~~g~~~~~~---------- 68 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDE----N-----PTAQSLLEEGIKVVCGSHPLEL---------- 68 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGG----C-----HHHHHHHHTTCEEEESCCCGGG----------
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccC----C-----hHHHHHHhCCCEEEECCChHHh----------
Confidence 57899999999999999999999999999998765211 1 1234678889999877431100
Q ss_pred EEeCCCcEEEcCEEEEeecCccCChhh
Q 011351 286 VKLEDGSTIDADTIVIGIGAKPTVSPF 312 (488)
Q Consensus 286 v~l~~g~~i~~D~vi~a~G~~p~~~~~ 312 (488)
+.+ .+|.||+++|..++.+.+
T Consensus 69 --~~~----~~d~vv~spgi~~~~p~~ 89 (451)
T 3lk7_A 69 --LDE----DFCYMIKNPGIPYNNPMV 89 (451)
T ss_dssp --GGS----CEEEEEECTTSCTTSHHH
T ss_pred --hcC----CCCEEEECCcCCCCChhH
Confidence 000 179999999998887653
No 370
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1
Probab=95.68 E-value=0.0073 Score=62.50 Aligned_cols=61 Identities=13% Similarity=0.254 Sum_probs=44.4
Q ss_pred HHHHHcCcEEEcCCeEEEEEeCCC---CcEEEEEeC--CCc--EEEc-CEEEEeecCccCChhhhhcCC
Q 011351 257 QLYQQNGVKFVKGASIKNLEAGSD---GRVAAVKLE--DGS--TIDA-DTIVIGIGAKPTVSPFERVGL 317 (488)
Q Consensus 257 ~~l~~~GV~v~~~~~v~~i~~~~~---~~v~~v~l~--~g~--~i~~-D~vi~a~G~~p~~~~~~~~gl 317 (488)
...++.|+++++++.|+++..+++ +++.+|... +|+ ++.+ +.||+|+|.-....+|..+|+
T Consensus 239 ~~~~~~nl~i~~~~~v~~l~~~~~~~~~~~~GV~~~~~~g~~~~v~A~k~VILaaG~~~sp~lL~~SGI 307 (587)
T 1gpe_A 239 PNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGI 307 (587)
T ss_dssp TTTTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTE
T ss_pred HhhcCCCcEEEcCCEEEEEEECCCCCCCEEEEEEEEeCCCcEEEEEecccEEEccCCCCCHHHHHhCCC
Confidence 334567999999999999975432 467777764 564 4678 899999998765566666554
No 371
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*
Probab=95.67 E-value=0.0066 Score=62.27 Aligned_cols=64 Identities=22% Similarity=0.356 Sum_probs=45.6
Q ss_pred HHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC---Cc--EEEcC-EEEEeecCccCChhhhhcCC
Q 011351 254 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GS--TIDAD-TIVIGIGAKPTVSPFERVGL 317 (488)
Q Consensus 254 ~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~---g~--~i~~D-~vi~a~G~~p~~~~~~~~gl 317 (488)
++....++.|+++++++.|+++..++++++.+|.+.+ |+ ++.++ .||+|+|.-....++..+|+
T Consensus 214 ~l~~a~~~~~~~i~~~~~V~~i~~~~~~~~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~~sp~lL~~SGi 283 (546)
T 2jbv_A 214 YIHPIVEQENFTLLTGLRARQLVFDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGI 283 (546)
T ss_dssp HTGGGTTCTTEEEECSCEEEEEEECTTSBEEEEEEESSTTSCEEEEEEEEEEEECSHHHHHHHHHHHTTE
T ss_pred HHHHHhcCCCcEEEeCCEEEEEEECCCCeEEEEEEEECCCCcEEEEEeCccEEEecCccCCchhhhhcCC
Confidence 3333334679999999999999865437777887644 53 68898 99999998433356655554
No 372
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=95.64 E-value=0.013 Score=48.10 Aligned_cols=37 Identities=11% Similarity=0.271 Sum_probs=32.5
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
...+.+|+|+|.|.-|...|..|.+.|+ +|+++|+++
T Consensus 4 ~~~~~~viIiG~G~~G~~la~~L~~~g~---~v~vid~~~ 40 (140)
T 3fwz_A 4 VDICNHALLVGYGRVGSLLGEKLLASDI---PLVVIETSR 40 (140)
T ss_dssp CCCCSCEEEECCSHHHHHHHHHHHHTTC---CEEEEESCH
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCH
Confidence 3456789999999999999999999987 899999764
No 373
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Probab=95.50 E-value=0.0056 Score=62.91 Aligned_cols=67 Identities=15% Similarity=0.221 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEeC---CC-CcEEEEEeCC--C-c--EEEc-CEEEEeecCccCChhhhhcCC
Q 011351 251 LAQRYEQLYQQNGVKFVKGASIKNLEAG---SD-GRVAAVKLED--G-S--TIDA-DTIVIGIGAKPTVSPFERVGL 317 (488)
Q Consensus 251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~---~~-~~v~~v~l~~--g-~--~i~~-D~vi~a~G~~p~~~~~~~~gl 317 (488)
...++...+++.+++|++++.|++|.-+ ++ +++++|++.+ | + ++.+ ..||+|.|.--...+|..+|+
T Consensus 210 ~~ayL~p~~~r~NL~Vlt~a~V~rIl~~~~~~g~~rA~GVe~~~~~g~~~~~v~A~kEVILsAGai~SPqlL~lSGI 286 (566)
T 3fim_B 210 STAYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGI 286 (566)
T ss_dssp HHHTHHHHTTCTTEEEESSCEEEEEECCEEETTEEECCEEEEESSTTSCCEEEEEEEEEEECCHHHHHHHHHHHTTE
T ss_pred HHHHhhhhccCCCeEEECCCEEEEEEeecCCCCCCEEEEEEEEECCCceEEEEEeeeEEEEecCCcCChHHHHhcCC
Confidence 3345555556789999999999999854 12 5666777643 4 3 4667 789999997544455555554
No 374
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=95.42 E-value=0.02 Score=54.50 Aligned_cols=80 Identities=23% Similarity=0.231 Sum_probs=58.5
Q ss_pred cCCeEEEECCCHHHHH-HHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEE
Q 011351 206 KAKKVVVVGGGYIGME-VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 284 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e-~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~ 284 (488)
..+++.|||.|-+|+. +|..|.++|.+|++.+..+. ++ ..+.|++.|++++.+.....
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~------~~-----~~~~L~~~gi~v~~g~~~~~---------- 61 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY------PP-----MSTQLEALGIDVYEGFDAAQ---------- 61 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC------TT-----HHHHHHHTTCEEEESCCGGG----------
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC------cH-----HHHHHHhCCCEEECCCCHHH----------
Confidence 3578999999999996 88999999999999987653 11 23457788999886632110
Q ss_pred EEEeCCCcEEEcCEEEEeecCccCChhh
Q 011351 285 AVKLEDGSTIDADTIVIGIGAKPTVSPF 312 (488)
Q Consensus 285 ~v~l~~g~~i~~D~vi~a~G~~p~~~~~ 312 (488)
+.. ..+|.||+++|..|+.+.+
T Consensus 62 ---l~~---~~~d~vV~Spgi~~~~p~~ 83 (326)
T 3eag_A 62 ---LDE---FKADVYVIGNVAKRGMDVV 83 (326)
T ss_dssp ---GGS---CCCSEEEECTTCCTTCHHH
T ss_pred ---cCC---CCCCEEEECCCcCCCCHHH
Confidence 000 1479999999999887654
No 375
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=95.21 E-value=0.019 Score=51.10 Aligned_cols=107 Identities=15% Similarity=0.231 Sum_probs=66.6
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 285 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~ 285 (488)
.+++++|||+|.+|..-+..|.+.|.+|+++.+. +.++ +.+..++.+++++... +.
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~-------~~~~----l~~l~~~~~i~~i~~~----~~--------- 85 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT-------VSAE----INEWEAKGQLRVKRKK----VG--------- 85 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS-------CCHH----HHHHHHTTSCEEECSC----CC---------
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC-------CCHH----HHHHHHcCCcEEEECC----CC---------
Confidence 5799999999999999999999999999999753 2333 3344455567765331 11
Q ss_pred EEeCCCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCC----CCCC-CCCCEEEEceec
Q 011351 286 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG----QFRT-RMPGIFAIGDVA 344 (488)
Q Consensus 286 v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~----~~~t-~~~~Ifa~GD~a 344 (488)
.+.--.+|+||.|||.......+... .. .++.||. .+.+ ..|-++--||+.
T Consensus 86 ----~~dL~~adLVIaAT~d~~~N~~I~~~---ak-~gi~VNvvD~p~~~~f~~Paiv~rg~l~ 141 (223)
T 3dfz_A 86 ----EEDLLNVFFIVVATNDQAVNKFVKQH---IK-NDQLVNMASSFSDGNIQIPAQFSRGRLS 141 (223)
T ss_dssp ----GGGSSSCSEEEECCCCTHHHHHHHHH---SC-TTCEEEC-----CCSEECCEEEEETTEE
T ss_pred ----HhHhCCCCEEEECCCCHHHHHHHHHH---Hh-CCCEEEEeCCcccCeEEEeeEEEeCCEE
Confidence 11112489999999976543333222 11 3455542 2222 456666666655
No 376
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=95.12 E-value=0.028 Score=46.82 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=30.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~ 86 (488)
.+.+|+|+|+|..|...+..|.+.|+ +|+++|++
T Consensus 2 ~~~~vlI~G~G~vG~~la~~L~~~g~---~V~vid~~ 35 (153)
T 1id1_A 2 RKDHFIVCGHSILAINTILQLNQRGQ---NVTVISNL 35 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTC---CEEEEECC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC---CEEEEECC
Confidence 35689999999999999999999887 89999975
No 377
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=95.10 E-value=0.024 Score=47.31 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
....+|+|+|+|.-|...|..|.+.|. +|+++++++
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g~---~V~vid~~~ 52 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSGH---SVVVVDKNE 52 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCG
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCC---eEEEEECCH
Confidence 345789999999999999999999886 899999764
No 378
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=95.03 E-value=0.016 Score=58.59 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=31.0
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 243 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l 243 (488)
|+|+|||+|..|+-+|..|++.|.+|+++++++++-
T Consensus 2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~G 37 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPG 37 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC----
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCC
Confidence 689999999999999999999999999999987653
No 379
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=94.98 E-value=0.022 Score=46.62 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=30.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
+++|+|+|+|.-|...|..|.+.|+ +|+++|+++
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~---~V~~id~~~ 39 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGK---KVLAVDKSK 39 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC---eEEEEECCH
Confidence 4689999999999999999999987 899999753
No 380
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=94.44 E-value=0.036 Score=43.45 Aligned_cols=33 Identities=12% Similarity=0.286 Sum_probs=29.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcC-CCCCcEEEEcCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKE 86 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g-~~~~~V~lie~~ 86 (488)
+++|+|+|+|..|...+..|.+.| + +|++++++
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~---~v~~~~r~ 38 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNY---SVTVADHD 38 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSE---EEEEEESC
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCc---eEEEEeCC
Confidence 468999999999999999999987 5 79998865
No 381
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=94.26 E-value=0.048 Score=44.22 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=29.1
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~ 86 (488)
++|+|||+|.-|...|..|.+.|+ +|+++|++
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~---~v~~~d~~ 36 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGH---DIVLIDID 36 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC---EEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC---eEEEEECC
Confidence 589999999999999999999886 89999865
No 382
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=93.90 E-value=0.059 Score=47.87 Aligned_cols=36 Identities=25% Similarity=0.521 Sum_probs=32.2
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~ 86 (488)
....++|+|||||..|...+..|.+.|. +|+||+++
T Consensus 28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA---~VtVvap~ 63 (223)
T 3dfz_A 28 DLKGRSVLVVGGGTIATRRIKGFLQEGA---AITVVAPT 63 (223)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHGGGCC---CEEEECSS
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEECCC
Confidence 3567899999999999999999999976 89999975
No 383
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=93.88 E-value=0.26 Score=46.46 Aligned_cols=85 Identities=13% Similarity=0.157 Sum_probs=55.4
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEc--CCeEEEEEeCCCCcEEE
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK--GASIKNLEAGSDGRVAA 285 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~--~~~v~~i~~~~~~~v~~ 285 (488)
.++.|+|+|..|.-+|..|.+.|.+|+++.|.+ . +.+++.|+.+.. .... .+.+ + .
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~----------~-----~~i~~~Gl~~~~~~~g~~-~~~~-----~-~ 60 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD----------Y-----ETVKAKGIRIRSATLGDY-TFRP-----A-A 60 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT----------H-----HHHHHHCEEEEETTTCCE-EECC-----S-C
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh----------H-----HHHHhCCcEEeecCCCcE-EEee-----e-e
Confidence 479999999999999999999999999987753 0 335666776653 1111 1100 0 1
Q ss_pred EEeCCC-cEE-EcCEEEEeecCccCChhhhhc
Q 011351 286 VKLEDG-STI-DADTIVIGIGAKPTVSPFERV 315 (488)
Q Consensus 286 v~l~~g-~~i-~~D~vi~a~G~~p~~~~~~~~ 315 (488)
+. .+- +.. .+|+||+|+-.....+.++..
T Consensus 61 ~~-~~~~~~~~~~DlVilavK~~~~~~~l~~l 91 (320)
T 3i83_A 61 VV-RSAAELETKPDCTLLCIKVVEGADRVGLL 91 (320)
T ss_dssp EE-SCGGGCSSCCSEEEECCCCCTTCCHHHHH
T ss_pred eE-CCHHHcCCCCCEEEEecCCCChHHHHHHH
Confidence 11 222 222 689999998877665655554
No 384
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*
Probab=93.62 E-value=0.072 Score=55.14 Aligned_cols=61 Identities=16% Similarity=0.129 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCC-CcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPT 308 (488)
Q Consensus 248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~-~~v~~v~l~~g~~i~~D~vi~a~G~~p~ 308 (488)
...+.+.+.+.++..|.++++++.|.+|..+++ +++.+|.+.+|+++.||.||......|.
T Consensus 377 ~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~lp~ 438 (650)
T 1vg0_A 377 QGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSE 438 (650)
T ss_dssp TTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCT
T ss_pred hhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhcCH
Confidence 447888888899999999999999999976543 7788888888999999999998776664
No 385
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=93.54 E-value=0.091 Score=53.02 Aligned_cols=39 Identities=26% Similarity=0.339 Sum_probs=34.8
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 244 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~ 244 (488)
..++|+|||+|.+|+.+|..|.+.|.+|+++++.+++..
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg 70 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG 70 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBT
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCC
Confidence 357899999999999999999999999999998876554
No 386
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=93.38 E-value=0.08 Score=52.11 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=32.1
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~ 242 (488)
++|+|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~ 35 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMI 35 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 36999999999999999999999999999988654
No 387
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.27 E-value=0.083 Score=45.30 Aligned_cols=36 Identities=14% Similarity=0.091 Sum_probs=31.3
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEA 87 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~lie~~~ 87 (488)
....+|+|+|.|.-|...|..|.+. |+ +|+++|+++
T Consensus 37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~---~V~vid~~~ 73 (183)
T 3c85_A 37 PGHAQVLILGMGRIGTGAYDELRARYGK---ISLGIEIRE 73 (183)
T ss_dssp CTTCSEEEECCSHHHHHHHHHHHHHHCS---CEEEEESCH
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhccCC---eEEEEECCH
Confidence 3356899999999999999999998 87 799999763
No 388
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=93.19 E-value=0.083 Score=42.94 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=30.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
+++|+|+|+|..|...+..|.+.|. +|+++++++
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~---~v~~~d~~~ 39 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGH---EVLAVDINE 39 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC---CCEEEESCH
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 4679999999999999999999886 799998653
No 389
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=92.89 E-value=0.064 Score=50.86 Aligned_cols=65 Identities=17% Similarity=0.185 Sum_probs=44.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCcCcccc------cC-HHHHHHHHHHHHHcCcEEEcCCe
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVG--WKLDTTIIFPENHLLQRL------FT-PSLAQRYEQLYQQNGVKFVKGAS 271 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~--~g~~v~lv~~~~~~l~~~------~~-~~~~~~~~~~l~~~GV~v~~~~~ 271 (488)
...|+|||+|+.|+-.|..|++ .|.+|+++++.+.+-... ++ ..+...+.+.+++.|+++..+..
T Consensus 65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~~~~~~~~~l~~~~~~~~~e~Gv~~~~~~~ 138 (326)
T 3fpz_A 65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGD 138 (326)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCSTTCCCEEEETTTHHHHHHTTCCCEECSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeCCccCCHHHHHHHHHHHHHHcCCEEEECCc
Confidence 3569999999999999999974 599999999876432211 00 11122344567788888876643
No 390
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=92.89 E-value=0.12 Score=48.44 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=32.0
Q ss_pred ccCCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 46 SFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 46 ~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
+|.+.+++|.|||+|.-|...|..|++.|+ +|+++|.++
T Consensus 10 ~~~~~~~~I~VIG~G~mG~~iA~~la~~G~---~V~~~d~~~ 48 (302)
T 1f0y_A 10 AKKIIVKHVTVIGGGLMGAGIAQVAAATGH---TVVLVDQTE 48 (302)
T ss_dssp --CCCCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred cccccCCEEEEECCCHHHHHHHHHHHhCCC---eEEEEECCH
Confidence 333445789999999999999999999987 899999764
No 391
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=92.75 E-value=0.094 Score=51.86 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=31.3
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~ 240 (488)
++|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus 23 ~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 679999999999999999999999999999875
No 392
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=92.71 E-value=0.12 Score=52.12 Aligned_cols=78 Identities=15% Similarity=0.154 Sum_probs=57.0
Q ss_pred hcCCeEEEECCCHHHHH-HHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcE
Q 011351 205 EKAKKVVVVGGGYIGME-VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV 283 (488)
Q Consensus 205 ~~~~~vvVvG~G~~g~e-~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v 283 (488)
...+++.|||-|-+|+- +|..|.++|.+|+..+.... + ..+.|++.|++++.+.....
T Consensus 20 ~~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~-------~-----~~~~l~~~gi~~~~g~~~~~--------- 78 (494)
T 4hv4_A 20 RRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN-------S-----VTQHLTALGAQIYFHHRPEN--------- 78 (494)
T ss_dssp --CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC-------H-----HHHHHHHTTCEEESSCCGGG---------
T ss_pred ccCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCC-------H-----HHHHHHHCCCEEECCCCHHH---------
Confidence 35689999999999996 79999999999999875431 1 22457888999987632100
Q ss_pred EEEEeCCCcEEEcCEEEEeecCccCChhh
Q 011351 284 AAVKLEDGSTIDADTIVIGIGAKPTVSPF 312 (488)
Q Consensus 284 ~~v~l~~g~~i~~D~vi~a~G~~p~~~~~ 312 (488)
+ ..+|.||+++|..++.+.+
T Consensus 79 ----~-----~~~d~vV~Spgi~~~~p~~ 98 (494)
T 4hv4_A 79 ----V-----LDASVVVVSTAISADNPEI 98 (494)
T ss_dssp ----G-----TTCSEEEECTTSCTTCHHH
T ss_pred ----c-----CCCCEEEECCCCCCCCHHH
Confidence 1 1379999999998876543
No 393
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=92.68 E-value=0.085 Score=52.35 Aligned_cols=129 Identities=15% Similarity=0.165 Sum_probs=74.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (488)
.++|+|||.|.+|+++|..|.++|+ +|++.|.....+.. ..+
T Consensus 5 ~~~v~viG~G~~G~~~a~~l~~~G~---~v~~~D~~~~~~~~-----------------------------------~~l 46 (439)
T 2x5o_A 5 GKNVVIIGLGLTGLSCVDFFLARGV---TPRVMDTRMTPPGL-----------------------------------DKL 46 (439)
T ss_dssp TCCEEEECCHHHHHHHHHHHHTTTC---CCEEEESSSSCTTG-----------------------------------GGS
T ss_pred CCEEEEEeecHHHHHHHHHHHhCCC---EEEEEECCCCcchh-----------------------------------HHh
Confidence 4689999999999999999999988 89999976542100 112
Q ss_pred HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeE
Q 011351 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV 210 (488)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~v 210 (488)
+ .|+++..+... .+. + . .+|.+|+++|..+. .|.+......++..+.. .+.+... ...+.|
T Consensus 47 ~-~G~~~~~g~~~----~~~--~--~-----~~d~vV~s~gi~~~-~p~~~~a~~~~~~v~~~---~~~~~~~-~~~~vI 107 (439)
T 2x5o_A 47 P-EAVERHTGSLN----DEW--L--M-----AADLIVASPGIALA-HPSLSAAADAGIEIVGD---IELFCRE-AQAPIV 107 (439)
T ss_dssp C-TTSCEEESSCC----HHH--H--H-----TCSEEEECTTSCTT-CHHHHHHHHTTCEEECH---HHHHHHH-CCSCEE
T ss_pred h-CCCEEEECCCc----HHH--h--c-----cCCEEEeCCCCCCC-CHHHHHHHHCCCcEEEH---HHHHHHh-cCCCEE
Confidence 3 46666654311 000 0 0 36889999986543 23221111133344432 2222222 235667
Q ss_pred EEECC---CHHHHHHHHHHHhCCCcEEEE
Q 011351 211 VVVGG---GYIGMEVAAAAVGWKLDTTII 236 (488)
Q Consensus 211 vVvG~---G~~g~e~A~~l~~~g~~v~lv 236 (488)
.|-|+ +-+..-++..|...|.++.+.
T Consensus 108 ~VTGTnGKTTT~~ml~~iL~~~g~~~~~~ 136 (439)
T 2x5o_A 108 AITGSNGKSTVTTLVGEMAKAAGVNVGVG 136 (439)
T ss_dssp EEECSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEECCCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 77765 334455666677778776544
No 394
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=92.64 E-value=0.12 Score=49.47 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=31.4
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 241 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~ 241 (488)
..|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus 5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~~ 38 (369)
T 3dme_A 5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEG 38 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 4699999999999999999999999999998853
No 395
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=92.60 E-value=0.048 Score=54.15 Aligned_cols=78 Identities=18% Similarity=0.180 Sum_probs=56.1
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 285 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~ 285 (488)
.+++++|||.|.+|+..|..|.++|.+|+..+..+..... ..|+ .|+++..+... . . .
T Consensus 4 ~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~-----------~~l~-~G~~~~~g~~~---~-~------~ 61 (439)
T 2x5o_A 4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGL-----------DKLP-EAVERHTGSLN---D-E------W 61 (439)
T ss_dssp TTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTG-----------GGSC-TTSCEEESSCC---H-H------H
T ss_pred CCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchh-----------HHhh-CCCEEEECCCc---H-H------H
Confidence 4688999999999999999999999999998876532210 2345 68888766421 0 0 0
Q ss_pred EEeCCCcEEEcCEEEEeecCccCChhh
Q 011351 286 VKLEDGSTIDADTIVIGIGAKPTVSPF 312 (488)
Q Consensus 286 v~l~~g~~i~~D~vi~a~G~~p~~~~~ 312 (488)
+. .+|.||+++|..|+.+.+
T Consensus 62 --~~-----~~d~vV~s~gi~~~~p~~ 81 (439)
T 2x5o_A 62 --LM-----AADLIVASPGIALAHPSL 81 (439)
T ss_dssp --HH-----TCSEEEECTTSCTTCHHH
T ss_pred --hc-----cCCEEEeCCCCCCCCHHH
Confidence 01 378999999988765543
No 396
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=92.57 E-value=0.11 Score=51.69 Aligned_cols=133 Identities=13% Similarity=0.178 Sum_probs=77.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (488)
+.++|+|||.|.+|+++|..|+++|+ +|++.|..+.. . ....+.
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G~---~V~~~D~~~~~---~------------------------------~~~~~~ 51 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLGA---IVTVNDGKPFD---E------------------------------NPTAQS 51 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTTC---EEEEEESSCGG---G------------------------------CHHHHH
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCC---EEEEEeCCccc---C------------------------------ChHHHH
Confidence 46899999999999999999999998 89999976420 0 012345
Q ss_pred HHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCe
Q 011351 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK 209 (488)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~ 209 (488)
+++.|+++..+.. +++. + ++ .+|.+|+++|..+. .|........++..+.. .+-+.. +...+.
T Consensus 52 L~~~gi~~~~g~~-----~~~~---~-~~---~~d~vv~spgi~~~-~p~~~~a~~~gi~v~~~---~e~~~~-~~~~~~ 114 (451)
T 3lk7_A 52 LLEEGIKVVCGSH-----PLEL---L-DE---DFCYMIKNPGIPYN-NPMVKKALEKQIPVLTE---VELAYL-VSESQL 114 (451)
T ss_dssp HHHTTCEEEESCC-----CGGG---G-GS---CEEEEEECTTSCTT-SHHHHHHHHTTCCEECH---HHHHHH-HCCSEE
T ss_pred HHhCCCEEEECCC-----hHHh---h-cC---CCCEEEECCcCCCC-ChhHHHHHHCCCcEEeH---HHHHHH-hcCCCE
Confidence 6778999887643 1110 0 00 27999999997543 22211111123333332 222222 233455
Q ss_pred EEEECC-CH--HHHHHHHHHHhCCCcEEE
Q 011351 210 VVVVGG-GY--IGMEVAAAAVGWKLDTTI 235 (488)
Q Consensus 210 vvVvG~-G~--~g~e~A~~l~~~g~~v~l 235 (488)
|.|-|+ |- +..-++..|...|.++.+
T Consensus 115 IaVTGTnGKTTTt~ml~~iL~~~g~~~~~ 143 (451)
T 3lk7_A 115 IGITGSNGKTTTTTMIAEVLNAGGQRGLL 143 (451)
T ss_dssp EEEECSSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 666664 22 334455667777776643
No 397
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=92.56 E-value=0.12 Score=50.97 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=31.4
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~ 242 (488)
.|+|||+|..|+-+|..|++.|.+|+++++++++
T Consensus 3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~ 36 (431)
T 3k7m_X 3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERL 36 (431)
T ss_dssp EEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 5899999999999999999999999999987654
No 398
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=92.54 E-value=0.066 Score=49.15 Aligned_cols=36 Identities=19% Similarity=0.443 Sum_probs=32.3
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
.+.++|+|||||-.|...+..|.+.|. +|+||+++.
T Consensus 11 l~~k~VLVVGgG~va~rka~~Ll~~Ga---~VtViap~~ 46 (274)
T 1kyq_A 11 LKDKRILLIGGGEVGLTRLYKLMPTGC---KLTLVSPDL 46 (274)
T ss_dssp CTTCEEEEEEESHHHHHHHHHHGGGTC---EEEEEEEEE
T ss_pred cCCCEEEEECCcHHHHHHHHHHHhCCC---EEEEEcCCC
Confidence 456899999999999999999999987 899999764
No 399
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=92.50 E-value=0.32 Score=39.52 Aligned_cols=77 Identities=14% Similarity=0.192 Sum_probs=50.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEE
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 286 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v 286 (488)
.++++|+|.|..|..+|..|.+.|.+|+++++.+ +. + +.+++.|+.++.+.. . +. .
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~---------~~---~-~~~~~~g~~~i~gd~------~-~~---~- 62 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR---------TR---V-DELRERGVRAVLGNA------A-NE---E- 62 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH---------HH---H-HHHHHTTCEEEESCT------T-SH---H-
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH---------HH---H-HHHHHcCCCEEECCC------C-CH---H-
Confidence 4689999999999999999999999999998753 21 1 234556777664310 0 00 0
Q ss_pred EeCCCcEEEcCEEEEeecCcc
Q 011351 287 KLEDGSTIDADTIVIGIGAKP 307 (488)
Q Consensus 287 ~l~~g~~i~~D~vi~a~G~~p 307 (488)
.+..-..-.+|.||++++...
T Consensus 63 ~l~~a~i~~ad~vi~~~~~~~ 83 (140)
T 3fwz_A 63 IMQLAHLECAKWLILTIPNGY 83 (140)
T ss_dssp HHHHTTGGGCSEEEECCSCHH
T ss_pred HHHhcCcccCCEEEEECCChH
Confidence 011001136899999988654
No 400
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=92.48 E-value=0.12 Score=51.81 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=32.1
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCcC
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHL 242 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~--~v~lv~~~~~~ 242 (488)
++|+|||+|.+|+-+|..|++.|. +|+++++++++
T Consensus 3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~ 39 (477)
T 3nks_A 3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERL 39 (477)
T ss_dssp CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSS
T ss_pred ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence 579999999999999999999999 99999987654
No 401
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=92.39 E-value=0.14 Score=50.31 Aligned_cols=61 Identities=18% Similarity=0.250 Sum_probs=45.1
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCcCcccc----------------cCHHHHHHHHHHHHHcCcEEE
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQRL----------------FTPSLAQRYEQLYQQNGVKFV 267 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g-~~v~lv~~~~~~l~~~----------------~~~~~~~~~~~~l~~~GV~v~ 267 (488)
...+|+|||+|..|+-+|..|++.| .+|+++++.+++-.+. +.+ ....+.+.+++.|+++.
T Consensus 5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~~~G~~~d~G~~~~~~-~~~~~~~l~~~~g~~~~ 82 (424)
T 2b9w_A 5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMGVP-SYDTIQEIMDRTGDKVD 82 (424)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCEETTEECCSSCCCBCT-TCHHHHHHHHHHCCCCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccCCCCcccccCceeecC-CcHHHHHHHHHhCCccc
Confidence 3468999999999999999999999 8999999887653211 111 12346677788887653
No 402
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=92.33 E-value=0.15 Score=49.27 Aligned_cols=37 Identities=24% Similarity=0.402 Sum_probs=33.2
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC-CcC
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHL 242 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~-~~~ 242 (488)
...+|+|||+|..|+-+|..|.+.|.+|+++++. +++
T Consensus 43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~v 80 (376)
T 2e1m_A 43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRV 80 (376)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCC
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecccccc
Confidence 3568999999999999999999999999999988 543
No 403
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=92.29 E-value=0.15 Score=49.12 Aligned_cols=36 Identities=28% Similarity=0.315 Sum_probs=32.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 89 (488)
|++|+|||||..|..+++.+++.|+ +++++|.++..
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~G~---~vv~vd~~~~~ 36 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKAGM---KVVLVDKNPQA 36 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCCCC
Confidence 5799999999999999999999998 89999987654
No 404
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=92.25 E-value=0.27 Score=49.37 Aligned_cols=37 Identities=16% Similarity=0.345 Sum_probs=33.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 90 (488)
.+||+|||||++||+||..|++.|+ +|+|+|+++...
T Consensus 39 ~~~v~iiGaG~aGl~aA~~l~~~g~---~v~v~E~~~~~G 75 (495)
T 2vvm_A 39 PWDVIVIGGGYCGLTATRDLTVAGF---KTLLLEARDRIG 75 (495)
T ss_dssp CEEEEEECCBHHHHHHHHHHHHTTC---CEEEECSSSBSB
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCC---CEEEEeCCCCCC
Confidence 3799999999999999999999987 899999987653
No 405
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=92.23 E-value=0.16 Score=49.03 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=30.5
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~ 240 (488)
+.|+|||+|..|++.|..+++.|.+|+++++.+
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~ 34 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP 34 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence 469999999999999999999999999999764
No 406
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=92.07 E-value=0.12 Score=45.86 Aligned_cols=32 Identities=28% Similarity=0.580 Sum_probs=29.2
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
+|+|+|+|.-|...|..|.+.|+ +|+++|+++
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~---~v~vid~~~ 33 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKY---GVVIINKDR 33 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTC---CEEEEESCH
T ss_pred EEEEECCCHHHHHHHHHHHhCCC---eEEEEECCH
Confidence 69999999999999999999887 899999663
No 407
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=92.02 E-value=0.26 Score=49.00 Aligned_cols=39 Identities=10% Similarity=0.222 Sum_probs=35.1
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 90 (488)
+..+||||||||++|++||..|++.|+ +|+|+|+++...
T Consensus 9 ~~~~dvvVIGaG~~GL~aA~~La~~G~---~V~vlE~~~~~G 47 (453)
T 2bcg_G 9 DTDYDVIVLGTGITECILSGLLSVDGK---KVLHIDKQDHYG 47 (453)
T ss_dssp CCBCSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSC
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCCCCC
Confidence 345899999999999999999999988 899999998754
No 408
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=91.99 E-value=0.16 Score=51.54 Aligned_cols=36 Identities=22% Similarity=0.422 Sum_probs=32.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCcC
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHL 242 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g-~~v~lv~~~~~~ 242 (488)
..+|+|||+|..|+-+|..|.+.| .+|++++.++++
T Consensus 8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~ri 44 (516)
T 1rsg_A 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRV 44 (516)
T ss_dssp EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence 357999999999999999999999 999999987643
No 409
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*
Probab=91.96 E-value=0.46 Score=49.16 Aligned_cols=39 Identities=18% Similarity=0.321 Sum_probs=35.4
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 90 (488)
++++||+|||+|..|...|..|++.|. +|.+||++++..
T Consensus 6 ~~~~D~~i~GtGl~~~~~a~~~~~~g~---~vl~id~~~~~g 44 (650)
T 1vg0_A 6 PSDFDVIVIGTGLPESIIAAACSRSGQ---RVLHVDSRSYYG 44 (650)
T ss_dssp CSBCSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSC
T ss_pred CCcCCEEEECCcHHHHHHHHHHHhCCC---EEEEEcCCCccc
Confidence 346999999999999999999999987 899999999764
No 410
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=91.91 E-value=0.15 Score=49.97 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=31.0
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~ 240 (488)
..|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~ 38 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK 38 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 479999999999999999999999999999875
No 411
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=91.78 E-value=0.16 Score=49.05 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=30.6
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 241 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~ 241 (488)
.|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus 5 dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~ 37 (389)
T 2gf3_A 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP 37 (389)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 699999999999999999999999999998753
No 412
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=91.71 E-value=0.19 Score=50.53 Aligned_cols=38 Identities=24% Similarity=0.227 Sum_probs=33.8
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 243 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l 243 (488)
...+|+|||+|..|+-+|..|.+.|.+|+++++.+++-
T Consensus 10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G 47 (489)
T 2jae_A 10 GSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPG 47 (489)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 45689999999999999999999999999999886543
No 413
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=91.67 E-value=0.44 Score=44.84 Aligned_cols=87 Identities=17% Similarity=0.221 Sum_probs=51.9
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 285 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~ 285 (488)
...+|.|||+|..|.-+|..|.+.|.+|+++ +++ +. .+.+++.|+.+.... . .+... + .
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~---------~~----~~~i~~~g~~~~~~~-~-~~~~~----~-~ 76 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP---------QH----VQAIEATGLRLETQS-F-DEQVK----V-S 76 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH---------HH----HHHHHHHCEEEECSS-C-EEEEC----C-E
T ss_pred cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH---------hH----HHHHHhCCeEEEcCC-C-cEEEe----e-e
Confidence 4678999999999999999999999999988 432 11 133455677665321 1 11100 0 1
Q ss_pred EEeCCCcE-EEcCEEEEeecCccCChhhhh
Q 011351 286 VKLEDGST-IDADTIVIGIGAKPTVSPFER 314 (488)
Q Consensus 286 v~l~~g~~-i~~D~vi~a~G~~p~~~~~~~ 314 (488)
+ ..+-+. -.+|+||+|+......+.++.
T Consensus 77 ~-~~~~~~~~~~D~vilavk~~~~~~~l~~ 105 (318)
T 3hwr_A 77 A-SSDPSAVQGADLVLFCVKSTDTQSAALA 105 (318)
T ss_dssp E-ESCGGGGTTCSEEEECCCGGGHHHHHHH
T ss_pred e-eCCHHHcCCCCEEEEEcccccHHHHHHH
Confidence 1 122111 258999999876543333443
No 414
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=91.63 E-value=0.18 Score=51.13 Aligned_cols=61 Identities=28% Similarity=0.366 Sum_probs=46.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc-----------------cCHHHHHHHHHHHHHcCcEEEc
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----------------FTPSLAQRYEQLYQQNGVKFVK 268 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~-----------------~~~~~~~~~~~~l~~~GV~v~~ 268 (488)
..+|+|||+|..|+-+|..|++.|.+|+++++++++-.+. +... ...+.+.+++.|++...
T Consensus 4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~-~~~~~~l~~~lgl~~~~ 81 (520)
T 1s3e_A 4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT-QNRILRLAKELGLETYK 81 (520)
T ss_dssp BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTTTSCEESSCCEECTT-CHHHHHHHHHTTCCEEE
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccCCCcccccCceEecCC-cHHHHHHHHHcCCccee
Confidence 3579999999999999999999999999999987663321 1111 34566778888987653
No 415
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=91.56 E-value=0.19 Score=50.27 Aligned_cols=38 Identities=29% Similarity=0.407 Sum_probs=32.4
Q ss_pred hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC
Q 011351 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (488)
Q Consensus 205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~ 242 (488)
....+|+|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus 14 ~~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~ 51 (478)
T 2ivd_A 14 TTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL 51 (478)
T ss_dssp ---CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence 34578999999999999999999999999999988654
No 416
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}
Probab=91.47 E-value=0.19 Score=48.26 Aligned_cols=37 Identities=24% Similarity=0.418 Sum_probs=32.5
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
....+|||+|+|.||+.+|..|...|.+ +|+++|++.
T Consensus 186 l~d~kVVi~GAGaAG~~iA~ll~~~Ga~--~I~v~D~~G 222 (398)
T 2a9f_A 186 LDEVSIVVNGGGSAGLSITRKLLAAGAT--KVTVVDKFG 222 (398)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCC--EEEEEETTE
T ss_pred CCccEEEEECCCHHHHHHHHHHHHcCCC--eEEEEECCC
Confidence 3457999999999999999999999863 899999874
No 417
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Probab=91.45 E-value=0.23 Score=47.05 Aligned_cols=37 Identities=11% Similarity=0.225 Sum_probs=30.9
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
.++.+|+|||+|..|.+.|..|++.|+- +|+|+|.++
T Consensus 7 ~~~~kI~VIGaG~vG~~lA~~la~~g~~--~V~L~D~~~ 43 (331)
T 1pzg_A 7 QRRKKVAMIGSGMIGGTMGYLCALRELA--DVVLYDVVK 43 (331)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHHTCC--EEEEECSSS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCC--eEEEEECCh
Confidence 3446999999999999999999998752 599999763
No 418
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=91.45 E-value=0.19 Score=48.18 Aligned_cols=33 Identities=30% Similarity=0.435 Sum_probs=30.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~ 239 (488)
...|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus 6 ~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~ 38 (363)
T 1c0p_A 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARD 38 (363)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence 357999999999999999999999999999975
No 419
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=91.39 E-value=0.28 Score=40.63 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=33.1
Q ss_pred hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 011351 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 241 (488)
Q Consensus 205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~ 241 (488)
..+++++|+|+|.+|..++..|.+.|.+|+++.+.+.
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~ 53 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY 53 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 4678999999999999999999999999999987653
No 420
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=91.38 E-value=0.2 Score=48.06 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=32.2
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~ 86 (488)
....+|||+|+|.+|..+|..|...|.+ +|+++|+.
T Consensus 190 l~~~kVVv~GAGaAG~~iAkll~~~G~~--~I~v~Dr~ 225 (388)
T 1vl6_A 190 IEEVKVVVNGIGAAGYNIVKFLLDLGVK--NVVAVDRK 225 (388)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHHHTCC--EEEEEETT
T ss_pred CCCcEEEEECCCHHHHHHHHHHHhCCCC--eEEEEECC
Confidence 3568999999999999999999999863 89999987
No 421
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=91.36 E-value=0.17 Score=48.81 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=31.8
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~ 242 (488)
..+.|+|||+|.+|+-+|..|+ .|.+|+++++.+.+
T Consensus 8 ~~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~~~ 43 (381)
T 3nyc_A 8 IEADYLVIGAGIAGASTGYWLS-AHGRVVVLEREAQP 43 (381)
T ss_dssp EECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSSST
T ss_pred CcCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCCCc
Confidence 3478999999999999999999 69999999988644
No 422
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=91.29 E-value=0.2 Score=49.60 Aligned_cols=39 Identities=13% Similarity=0.317 Sum_probs=34.6
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 90 (488)
++++||+|||+|++|+++|..|++.|. +|+++|+++...
T Consensus 4 ~~~~~v~iiG~G~~gl~~a~~l~~~g~---~v~~~e~~~~~g 42 (433)
T 1d5t_A 4 DEEYDVIVLGTGLTECILSGIMSVNGK---KVLHMDRNPYYG 42 (433)
T ss_dssp CSBCSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSC
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCC---cEEEEecCCCcc
Confidence 346899999999999999999999987 899999987654
No 423
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1
Probab=91.28 E-value=0.22 Score=46.98 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=31.0
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
++.+|+|||+|..|.+.|..|...+. -.+|+++|.+.
T Consensus 6 ~~~KI~IiGaG~vG~~~a~~l~~~~~-~~ev~L~Di~~ 42 (318)
T 1y6j_A 6 SRSKVAIIGAGFVGASAAFTMALRQT-ANELVLIDVFK 42 (318)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTC-SSEEEEECCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCCh
Confidence 35689999999999999999999876 45899999763
No 424
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=91.24 E-value=0.54 Score=38.00 Aligned_cols=33 Identities=9% Similarity=0.083 Sum_probs=30.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~ 239 (488)
.++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 468999999999999999999999999998764
No 425
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=91.18 E-value=0.24 Score=45.80 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=31.2
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
+.++|.|||+|.-|...|..|++.|+ +|+++|.++
T Consensus 3 ~~~kV~VIGaG~mG~~iA~~la~~G~---~V~l~d~~~ 37 (283)
T 4e12_A 3 GITNVTVLGTGVLGSQIAFQTAFHGF---AVTAYDINT 37 (283)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCH
Confidence 35799999999999999999999987 899998764
No 426
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=91.09 E-value=0.23 Score=48.22 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=32.5
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 243 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l 243 (488)
.+++|||+|.+|+-+|..|.+.|.+|+++++.+++-
T Consensus 4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G 39 (384)
T 2bi7_A 4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG 39 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcC
Confidence 479999999999999999999999999999876553
No 427
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=91.07 E-value=0.24 Score=48.06 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=30.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
..+|+|||+|.+|+.+|..++..|. +|+++|..+
T Consensus 190 ~~kV~ViG~G~iG~~aa~~a~~lGa---~V~v~D~~~ 223 (405)
T 4dio_A 190 AAKIFVMGAGVAGLQAIATARRLGA---VVSATDVRP 223 (405)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSST
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC---EEEEEcCCH
Confidence 5799999999999999999999987 899999764
No 428
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=91.07 E-value=0.38 Score=45.14 Aligned_cols=85 Identities=16% Similarity=0.158 Sum_probs=53.0
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEE
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 287 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~ 287 (488)
.++.|+|+|..|.-+|..|.+.|.+|+++.|.+ . +.+++.|+.+.....-..+.+ + .+.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~-------------~~i~~~g~~~~~~~g~~~~~~-----~-~~~ 61 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--Y-------------EAIAGNGLKVFSINGDFTLPH-----V-KGY 61 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--H-------------HHHHHTCEEEEETTCCEEESC-----C-CEE
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--H-------------HHHHhCCCEEEcCCCeEEEee-----c-eee
Confidence 479999999999999999999999999987642 0 335667877653210001100 0 011
Q ss_pred eCCCc-EEEcCEEEEeecCccCChhhhh
Q 011351 288 LEDGS-TIDADTIVIGIGAKPTVSPFER 314 (488)
Q Consensus 288 l~~g~-~i~~D~vi~a~G~~p~~~~~~~ 314 (488)
.+-+ .-++|+||+|+-.....+.++.
T Consensus 62 -~~~~~~~~~D~vilavk~~~~~~~l~~ 88 (312)
T 3hn2_A 62 -RAPEEIGPMDLVLVGLKTFANSRYEEL 88 (312)
T ss_dssp -SCHHHHCCCSEEEECCCGGGGGGHHHH
T ss_pred -cCHHHcCCCCEEEEecCCCCcHHHHHH
Confidence 1211 1268999999876655444444
No 429
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=90.88 E-value=0.28 Score=49.76 Aligned_cols=80 Identities=20% Similarity=0.136 Sum_probs=57.3
Q ss_pred hcCCeEEEECCCHHHHH-HHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcE
Q 011351 205 EKAKKVVVVGGGYIGME-VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV 283 (488)
Q Consensus 205 ~~~~~vvVvG~G~~g~e-~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v 283 (488)
...+++.+||-|-+|+- +|..|.++|.+|+..+.... ++ ..+.|++.||+++.+.....+
T Consensus 17 ~~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~------~~-----~~~~L~~~gi~~~~G~~~~~~-------- 77 (524)
T 3hn7_A 17 FQGMHIHILGICGTFMGSLALLARALGHTVTGSDANIY------PP-----MSTQLEQAGVTIEEGYLIAHL-------- 77 (524)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------TT-----HHHHHHHTTCEEEESCCGGGG--------
T ss_pred ecCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCC------cH-----HHHHHHHCCCEEECCCCHHHc--------
Confidence 46789999999999997 68888999999999887542 11 235577889998866321110
Q ss_pred EEEEeCCCcEEEcCEEEEeecCccCChhh
Q 011351 284 AAVKLEDGSTIDADTIVIGIGAKPTVSPF 312 (488)
Q Consensus 284 ~~v~l~~g~~i~~D~vi~a~G~~p~~~~~ 312 (488)
.-.+|.||+++|..++.+.+
T Consensus 78 ---------~~~~d~vV~Spgi~~~~p~l 97 (524)
T 3hn7_A 78 ---------QPAPDLVVVGNAMKRGMDVI 97 (524)
T ss_dssp ---------CSCCSEEEECTTCCTTSHHH
T ss_pred ---------CCCCCEEEECCCcCCCCHHH
Confidence 01479999999998876643
No 430
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=90.74 E-value=0.25 Score=44.77 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=32.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
..+|+|||+|-.|..+|..|.+.|. ++|+|+|.+..
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~~Gv--~~i~lvD~d~v 66 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASAGV--GNLTLLDFDTV 66 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTC--SEEEEECCCBC
T ss_pred CCeEEEEeeCHHHHHHHHHHHHcCC--CeEEEEcCCCc
Confidence 5789999999999999999999986 38999998753
No 431
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=90.73 E-value=0.25 Score=49.76 Aligned_cols=38 Identities=29% Similarity=0.330 Sum_probs=33.8
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 243 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l 243 (488)
...+|+|||+|..|+-+|..|.+.|.+|+++++.+++-
T Consensus 12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~G 49 (504)
T 1sez_A 12 SAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAG 49 (504)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCC
Confidence 35789999999999999999999999999999987653
No 432
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}
Probab=90.72 E-value=0.29 Score=45.98 Aligned_cols=37 Identities=11% Similarity=0.270 Sum_probs=31.8
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~ 86 (488)
+++.++|.|||+|..|.+.|..|++.++ .+|+++|..
T Consensus 5 ~~~~~kv~ViGaG~vG~~ia~~l~~~g~--~~v~l~D~~ 41 (315)
T 3tl2_A 5 TIKRKKVSVIGAGFTGATTAFLLAQKEL--ADVVLVDIP 41 (315)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHTTC--CEEEEECCG
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC--CeEEEEecc
Confidence 3456799999999999999999999876 489999975
No 433
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Probab=90.67 E-value=0.3 Score=46.14 Aligned_cols=37 Identities=14% Similarity=0.367 Sum_probs=31.5
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~ 86 (488)
....+|.|||+|..|.+.|..|+..+. -.+++++|..
T Consensus 3 ~~~~kI~ViGaG~vG~~~a~~l~~~~~-~~~l~l~D~~ 39 (326)
T 3pqe_A 3 KHVNKVALIGAGFVGSSYAFALINQGI-TDELVVIDVN 39 (326)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-CceEEEEecc
Confidence 345789999999999999999999886 3589999864
No 434
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*
Probab=90.63 E-value=0.27 Score=47.84 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=32.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~ 242 (488)
..+++|||+|.+|+-+|..|++.|.+|+++++.+++
T Consensus 29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~ 64 (397)
T 3hdq_A 29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHI 64 (397)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCC
Confidence 347999999999999999999999999999987654
No 435
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=90.63 E-value=0.26 Score=48.89 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=31.7
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~ 242 (488)
.+|+|||+|..|+-+|..|.+.|.+|+++++.+++
T Consensus 6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ 40 (453)
T 2yg5_A 6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRV 40 (453)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 47999999999999999999999999999987543
No 436
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=90.52 E-value=0.26 Score=47.22 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=31.7
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
.+++.+|.|||+|.-|.+.|..|++.|+ +|+++++++
T Consensus 26 ~~~~mkI~VIGaG~mG~alA~~La~~G~---~V~l~~r~~ 62 (356)
T 3k96_A 26 EPFKHPIAILGAGSWGTALALVLARKGQ---KVRLWSYES 62 (356)
T ss_dssp -CCCSCEEEECCSHHHHHHHHHHHTTTC---CEEEECSCH
T ss_pred cccCCeEEEECccHHHHHHHHHHHHCCC---eEEEEeCCH
Confidence 3445789999999999999999999987 899998764
No 437
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=90.42 E-value=0.25 Score=47.44 Aligned_cols=35 Identities=17% Similarity=0.070 Sum_probs=31.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
...+|+|||+|..|+.+|..++..|. +|+++|+.+
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa---~V~v~D~~~ 217 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGA---KTTGYDVRP 217 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTC---EEEEECSSG
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 35799999999999999999999987 899998764
No 438
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=90.28 E-value=0.7 Score=43.22 Aligned_cols=72 Identities=21% Similarity=0.331 Sum_probs=0.0
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 288 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l 288 (488)
+++|||+|..|.-+|..|. .|.+|+++.|.+ .-.+.+++.|+.+...... ... .+..
T Consensus 4 kI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~-------------~~~~~l~~~G~~~~~~~~~-~~~--------~~~~ 60 (307)
T 3ego_A 4 KIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ-------------EQAAAIQSEGIRLYKGGEE-FRA--------DCSA 60 (307)
T ss_dssp EEEEECCSHHHHHHHHHHH-TTSEEEEECSCH-------------HHHHHHHHHCEEEEETTEE-EEE--------CCEE
T ss_pred EEEEECCCHHHHHHHHHHh-cCCceEEEECCH-------------HHHHHHHhCCceEecCCCe-ecc--------cccc
Q ss_pred CCCcEEEcCEEEEee
Q 011351 289 EDGSTIDADTIVIGI 303 (488)
Q Consensus 289 ~~g~~i~~D~vi~a~ 303 (488)
.....-++|+||+|+
T Consensus 61 ~~~~~~~~D~vilav 75 (307)
T 3ego_A 61 DTSINSDFDLLVVTV 75 (307)
T ss_dssp ESSCCSCCSEEEECC
T ss_pred cccccCCCCEEEEEe
No 439
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=90.26 E-value=0.22 Score=48.43 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=30.6
Q ss_pred CeEEEECCCHHHHHHHHHHHh-CC-CcEEEEecCC
Q 011351 208 KKVVVVGGGYIGMEVAAAAVG-WK-LDTTIIFPEN 240 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~-~g-~~v~lv~~~~ 240 (488)
..|+|||+|..|+-+|..|++ .| .+|+++++.+
T Consensus 22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~ 56 (405)
T 2gag_B 22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW 56 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 469999999999999999999 89 9999999875
No 440
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=90.26 E-value=0.28 Score=46.23 Aligned_cols=32 Identities=16% Similarity=0.425 Sum_probs=29.3
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~ 86 (488)
++|.|||+|.-|.+.|..|.+.|. +|++++++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~---~V~~~~r~ 34 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGH---CVSVVSRS 34 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTC---EEEEECST
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC---eEEEEeCC
Confidence 589999999999999999999886 89999865
No 441
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=90.25 E-value=0.3 Score=48.18 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=31.4
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCc
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH 241 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~-~v~lv~~~~~ 241 (488)
..|+|||+|..|+-+|..|++.|. +|+++++.+.
T Consensus 7 ~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~ 41 (438)
T 3dje_A 7 SSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPV 41 (438)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 479999999999999999999999 9999998754
No 442
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=90.16 E-value=0.43 Score=39.35 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=30.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~ 239 (488)
.++++|+|+|.+|..++..|.+.|.+|+++.+.
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence 467999999999999999999999999999875
No 443
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*
Probab=90.12 E-value=0.34 Score=45.63 Aligned_cols=37 Identities=19% Similarity=0.366 Sum_probs=31.2
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~ 86 (488)
+++.+|+|||+|..|.+.|..|...+. -.+|.++|.+
T Consensus 4 m~~~KI~IIGaG~vG~~la~~l~~~~~-~~ei~L~Di~ 40 (317)
T 3d0o_A 4 FKGNKVVLIGNGAVGSSYAFSLVNQSI-VDELVIIDLD 40 (317)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHCS-CSEEEEECSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCC
Confidence 345799999999999999999998875 4589999854
No 444
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=90.05 E-value=0.34 Score=45.86 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=30.1
Q ss_pred CCCeEEEEcCchHHHH-HHHHHHHcCCCCCcEEEEcCCC
Q 011351 50 ENREFVIVGGGNAAGY-AARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~-aA~~L~~~g~~~~~V~lie~~~ 87 (488)
.+++|.|||.|.+|++ +|..|.++|+ +|++.|..+
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~---~V~~~D~~~ 38 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAGF---EVSGCDAKM 38 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCCC---EEEEEcCCC
Confidence 3578999999999997 7888899988 899999764
No 445
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=90.04 E-value=0.4 Score=44.82 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=29.0
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~ 239 (488)
.+|.|||+|..|.-+|..|.+.|.+|+++.|.
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~ 35 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQW 35 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence 47999999999999999999999999988664
No 446
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=89.88 E-value=0.26 Score=48.17 Aligned_cols=36 Identities=19% Similarity=0.388 Sum_probs=32.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCcC
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHL 242 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~-g~~v~lv~~~~~~ 242 (488)
..+++|||+|..|+-+|..|++. |.+|+++++++++
T Consensus 7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~ 43 (399)
T 1v0j_A 7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI 43 (399)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 45799999999999999999998 9999999988654
No 447
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=89.82 E-value=0.27 Score=48.92 Aligned_cols=36 Identities=36% Similarity=0.565 Sum_probs=32.1
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
.+.++|+|||||..|...+..|.+.|. +|++++++.
T Consensus 10 l~~~~vlVvGgG~va~~k~~~L~~~ga---~V~vi~~~~ 45 (457)
T 1pjq_A 10 LRDRDCLIVGGGDVAERKARLLLEAGA---RLTVNALTF 45 (457)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTB---EEEEEESSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCcC---EEEEEcCCC
Confidence 346899999999999999999999886 899999864
No 448
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=89.81 E-value=0.4 Score=47.65 Aligned_cols=78 Identities=13% Similarity=0.170 Sum_probs=53.1
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 285 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~ 285 (488)
.+++++|||+|.+|...+..|.+.|.+|+++.+. +.++ +.+..++.+++++.+.. .
T Consensus 11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~-------~~~~----~~~l~~~~~i~~~~~~~----~--------- 66 (457)
T 1pjq_A 11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT-------FIPQ----FTVWANEGMLTLVEGPF----D--------- 66 (457)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS-------CCHH----HHHHHTTTSCEEEESSC----C---------
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC-------CCHH----HHHHHhcCCEEEEECCC----C---------
Confidence 5789999999999999999999999999999763 2232 23333345666654321 1
Q ss_pred EEeCCCcEEEcCEEEEeecCcc-CChh
Q 011351 286 VKLEDGSTIDADTIVIGIGAKP-TVSP 311 (488)
Q Consensus 286 v~l~~g~~i~~D~vi~a~G~~p-~~~~ 311 (488)
.+.--.+|+||.+||... |...
T Consensus 67 ----~~~l~~~~lVi~at~~~~~n~~i 89 (457)
T 1pjq_A 67 ----ETLLDSCWLAIAATDDDTVNQRV 89 (457)
T ss_dssp ----GGGGTTCSEEEECCSCHHHHHHH
T ss_pred ----ccccCCccEEEEcCCCHHHHHHH
Confidence 111114799999999873 5443
No 449
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=89.78 E-value=0.35 Score=50.81 Aligned_cols=34 Identities=15% Similarity=0.331 Sum_probs=31.3
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 241 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~ 241 (488)
..|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus 273 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~ 306 (676)
T 3ps9_A 273 REAAIIGGGIASALLSLALLRRGWQVTLYCADEA 306 (676)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 5799999999999999999999999999998643
No 450
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}
Probab=89.59 E-value=0.43 Score=45.36 Aligned_cols=36 Identities=22% Similarity=0.334 Sum_probs=30.9
Q ss_pred CCCeEEEEcC-chHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351 50 ENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKE 86 (488)
Q Consensus 50 ~~~~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~lie~~ 86 (488)
.+.+|+|||+ |..|.++|..+...|. ..+|+++|..
T Consensus 7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~-~~evvLiDi~ 43 (343)
T 3fi9_A 7 TEEKLTIVGAAGMIGSNMAQTAAMMRL-TPNLCLYDPF 43 (343)
T ss_dssp CSSEEEEETTTSHHHHHHHHHHHHTTC-CSCEEEECSC
T ss_pred CCCEEEEECCCChHHHHHHHHHHhcCC-CCEEEEEeCC
Confidence 3578999997 9999999999999886 4489999964
No 451
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=89.55 E-value=0.24 Score=47.25 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=29.5
Q ss_pred eEEEECCCHHHHHHHHHHHhCC------CcEEEEecCC
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWK------LDTTIIFPEN 240 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g------~~v~lv~~~~ 240 (488)
.|+|||+|.+|+-+|..|++.| .+|+++++..
T Consensus 2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF 39 (351)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence 6899999999999999999997 8999999873
No 452
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=89.54 E-value=0.33 Score=51.20 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=31.7
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~ 242 (488)
..|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 265 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~ 299 (689)
T 3pvc_A 265 DDIAIIGGGIVSALTALALQRRGAVVTLYCADAQP 299 (689)
T ss_dssp SSEEEECCSHHHHHHHHHHHTTTCCEEEEESSSST
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCCcc
Confidence 57999999999999999999999999999986433
No 453
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Probab=89.43 E-value=0.42 Score=45.04 Aligned_cols=37 Identities=11% Similarity=0.182 Sum_probs=31.4
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
|++.+|.|||+|..|.+.|..|...+. . +|+|+|..+
T Consensus 5 m~~~kI~viGaG~vG~~~a~~l~~~~~-~-~v~L~Di~~ 41 (324)
T 3gvi_A 5 MARNKIALIGSGMIGGTLAHLAGLKEL-G-DVVLFDIAE 41 (324)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHHTTC-C-EEEEECSSS
T ss_pred CcCCEEEEECCCHHHHHHHHHHHhCCC-C-eEEEEeCCc
Confidence 456799999999999999999999886 3 899999654
No 454
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=89.43 E-value=0.32 Score=46.90 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=30.9
Q ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC
Q 011351 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (488)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~ 242 (488)
+++|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus 3 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~ 36 (367)
T 1i8t_A 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI 36 (367)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 5899999999999999999999999999987644
No 455
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=89.39 E-value=0.38 Score=49.19 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=31.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHh---CCCcEEEEecCC
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVG---WKLDTTIIFPEN 240 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~---~g~~v~lv~~~~ 240 (488)
..+|+|||||..|+-+|..|++ .|.+|+|+++.+
T Consensus 25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~ 61 (550)
T 2e4g_A 25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD 61 (550)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence 5689999999999999999999 999999999864
No 456
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=89.27 E-value=0.32 Score=45.70 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=28.5
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~ 86 (488)
++|.|||+|.-|.+.|..|.+.|. +|++++++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~---~V~~~~r~ 34 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGE---DVHFLLRR 34 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSC---CEEEECST
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC---eEEEEEcC
Confidence 589999999999999999999886 89999865
No 457
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=89.23 E-value=0.37 Score=46.06 Aligned_cols=33 Identities=15% Similarity=0.249 Sum_probs=29.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~ 86 (488)
+.+|.|||+|.-|...|..|.+.|+ +|++++++
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~g~---~V~~~~r~ 36 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALKGQ---SVLAWDID 36 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSC
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCC---EEEEEeCC
Confidence 4689999999999999999999886 79999865
No 458
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=89.17 E-value=0.43 Score=43.88 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=30.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
+++|+|.|+|+-|...+..|.+.|+ +|+++++..
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~g~---~V~~~~r~~ 36 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQGH---EVTGLRRSA 36 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTC---CEEEEECTT
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence 4689999999999999999999987 899998764
No 459
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=89.16 E-value=0.29 Score=43.30 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=29.6
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEE-EcCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCI-VSKE 86 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~l-ie~~ 86 (488)
+++.+|.|||+|.-|.+.|..|.+.|+ +|++ ++++
T Consensus 21 m~mmkI~IIG~G~mG~~la~~l~~~g~---~V~~v~~r~ 56 (220)
T 4huj_A 21 QSMTTYAIIGAGAIGSALAERFTAAQI---PAIIANSRG 56 (220)
T ss_dssp GGSCCEEEEECHHHHHHHHHHHHHTTC---CEEEECTTC
T ss_pred hcCCEEEEECCCHHHHHHHHHHHhCCC---EEEEEECCC
Confidence 335689999999999999999999887 7888 6654
No 460
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=89.07 E-value=0.31 Score=48.61 Aligned_cols=34 Identities=32% Similarity=0.462 Sum_probs=31.0
Q ss_pred CeEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCc
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENH 241 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g--~~v~lv~~~~~ 241 (488)
.+|+|||+|.+|+-+|..|.+.| .+|+++++.++
T Consensus 5 ~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~ 40 (475)
T 3lov_A 5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGER 40 (475)
T ss_dssp CEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSS
T ss_pred ccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 57999999999999999999999 99999998643
No 461
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=89.04 E-value=0.45 Score=44.95 Aligned_cols=37 Identities=19% Similarity=0.534 Sum_probs=33.0
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
...+|+|||+|-.|-.+|..|++.|. ++++|+|.+..
T Consensus 33 ~~~~VlIvGaGGlGs~va~~La~aGV--g~ItlvD~D~V 69 (340)
T 3rui_A 33 KNTKVLLLGAGTLGCYVSRALIAWGV--RKITFVDNGTV 69 (340)
T ss_dssp HTCEEEEECCSHHHHHHHHHHHHTTC--CEEEEECCCBC
T ss_pred hCCEEEEECCCHHHHHHHHHHHHcCC--CEEEEecCCEe
Confidence 46799999999999999999999997 49999998754
No 462
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=88.94 E-value=0.39 Score=44.86 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=29.0
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~ 86 (488)
.+|.|||+|.-|...|..|.+.|+ +|++++++
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~---~V~~~~r~ 35 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGN---DVTLIDQW 35 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC---EEEEECSC
T ss_pred CeEEEECcCHHHHHHHHHHHhCCC---cEEEEECC
Confidence 489999999999999999999887 89998865
No 463
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=88.89 E-value=0.44 Score=45.25 Aligned_cols=33 Identities=21% Similarity=0.445 Sum_probs=29.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~ 86 (488)
+.+|.|||+|.-|...|..|.+.|+ +|++++++
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~---~V~~~~r~ 35 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGE---AINVLARG 35 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTC---CEEEECCH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCC---EEEEEECh
Confidence 4589999999999999999999987 79998853
No 464
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=88.83 E-value=0.46 Score=49.77 Aligned_cols=37 Identities=24% Similarity=0.520 Sum_probs=33.2
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~ 242 (488)
..++|+|||+|+.|+.+|..|.+.|.+|+++++.+++
T Consensus 106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~ 142 (662)
T 2z3y_A 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV 142 (662)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4578999999999999999999999999999987543
No 465
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Probab=88.73 E-value=0.52 Score=44.32 Aligned_cols=36 Identities=11% Similarity=0.362 Sum_probs=31.0
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~ 86 (488)
++.+|+|||+|..|.+.|..|+..+. ..+|+++|.+
T Consensus 5 ~~~kI~IIGaG~vG~sla~~l~~~~~-~~ev~l~Di~ 40 (316)
T 1ldn_A 5 GGARVVVIGAGFVGASYVFALMNQGI-ADEIVLIDAN 40 (316)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSS
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCC-CCEEEEEeCC
Confidence 35699999999999999999998875 4589999965
No 466
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=88.66 E-value=0.15 Score=50.92 Aligned_cols=34 Identities=26% Similarity=0.495 Sum_probs=30.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
.++|+|+|+|-.|.+.|..|.+.|+ +|++||+++
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~---~v~vId~d~ 36 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENN---DITIVDKDG 36 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTE---EEEEEESCH
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCC---CEEEEECCH
Confidence 3579999999999999999998877 899999986
No 467
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=88.65 E-value=0.43 Score=43.19 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=32.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
...+|+|||+|-.|..+|..|++.|.. +++|+|.+..
T Consensus 27 ~~~~VlvvG~GglG~~va~~La~~Gvg--~i~lvD~d~v 63 (251)
T 1zud_1 27 LDSQVLIIGLGGLGTPAALYLAGAGVG--TLVLADDDDV 63 (251)
T ss_dssp HTCEEEEECCSTTHHHHHHHHHHTTCS--EEEEECCCBC
T ss_pred hcCcEEEEccCHHHHHHHHHHHHcCCC--eEEEEeCCCc
Confidence 357999999999999999999999973 8999998753
No 468
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=88.62 E-value=0.46 Score=51.11 Aligned_cols=35 Identities=23% Similarity=0.502 Sum_probs=32.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 241 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~ 241 (488)
.++|+|||+|+.|+.+|..|.+.|.+|+++++.++
T Consensus 278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~ 312 (852)
T 2xag_A 278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR 312 (852)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCc
Confidence 46899999999999999999999999999997754
No 469
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=88.55 E-value=0.85 Score=43.20 Aligned_cols=77 Identities=16% Similarity=0.241 Sum_probs=49.4
Q ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEE
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 287 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~ 287 (488)
.+|.|||+|..|.-+|..|.+.|.+|+++.|.+ . .+.+++.|+.+..... . .... + .+
T Consensus 4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~-------------~-~~~~~~~g~~~~~~~~-~-~~~~----~-~~- 61 (335)
T 3ghy_A 4 TRICIVGAGAVGGYLGARLALAGEAINVLARGA-------------T-LQALQTAGLRLTEDGA-T-HTLP----V-RA- 61 (335)
T ss_dssp CCEEEESCCHHHHHHHHHHHHTTCCEEEECCHH-------------H-HHHHHHTCEEEEETTE-E-EEEC----C-EE-
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEEChH-------------H-HHHHHHCCCEEecCCC-e-EEEe----e-eE-
Confidence 579999999999999999999999999886531 1 1345677877653211 1 1100 0 11
Q ss_pred eCCCc-EEEcCEEEEeecCc
Q 011351 288 LEDGS-TIDADTIVIGIGAK 306 (488)
Q Consensus 288 l~~g~-~i~~D~vi~a~G~~ 306 (488)
..+-+ .-.+|+||+|+...
T Consensus 62 ~~~~~~~~~~D~Vilavk~~ 81 (335)
T 3ghy_A 62 THDAAALGEQDVVIVAVKAP 81 (335)
T ss_dssp ESCHHHHCCCSEEEECCCHH
T ss_pred ECCHHHcCCCCEEEEeCCch
Confidence 11211 13589999997654
No 470
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*
Probab=88.49 E-value=0.45 Score=46.42 Aligned_cols=34 Identities=15% Similarity=0.140 Sum_probs=30.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
..+|+|||+|.+|+.++..++..|. +|+++|..+
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga---~V~v~D~~~ 205 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANSLGA---IVRAFDTRP 205 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCG
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC---EEEEEcCCH
Confidence 5799999999999999999999886 799998764
No 471
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=88.42 E-value=0.42 Score=44.26 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=32.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
...+|+|||+|-.|-.+|..|++.|. ++++|+|.+..
T Consensus 35 ~~~~VlVvGaGGlGs~va~~La~aGV--G~i~lvD~D~V 71 (292)
T 3h8v_A 35 RTFAVAIVGVGGVGSVTAEMLTRCGI--GKLLLFDYDKV 71 (292)
T ss_dssp GGCEEEEECCSHHHHHHHHHHHHHTC--SEEEEECCCBC
T ss_pred hCCeEEEECcCHHHHHHHHHHHHcCC--CEEEEECCCcc
Confidence 45799999999999999999999996 48999997753
No 472
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=88.41 E-value=0.62 Score=37.34 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=29.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~ 239 (488)
..+++|+|+|.+|..++..|.+.|.+|+++.+.
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~ 36 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID 36 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 357999999999999999999999999988764
No 473
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*
Probab=88.38 E-value=0.51 Score=44.37 Aligned_cols=36 Identities=11% Similarity=0.275 Sum_probs=30.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
+.+|+|||+|..|...|..|.+.|+ ..+|+++|.++
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~g~-~~~V~l~d~~~ 42 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQRGI-AREIVLEDIAK 42 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCCh
Confidence 4589999999999999999999875 34799998753
No 474
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=88.20 E-value=0.6 Score=43.93 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
|++.+|.|||+|..|.+.|..|+..+. . +++++|..+
T Consensus 3 m~~~kI~iiGaG~vG~~~a~~l~~~~~-~-~v~l~Di~~ 39 (321)
T 3p7m_A 3 MARKKITLVGAGNIGGTLAHLALIKQL-G-DVVLFDIAQ 39 (321)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTC-C-EEEEECSSS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-c-eEEEEeCCh
Confidence 445799999999999999999999876 3 899999764
No 475
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=88.15 E-value=0.39 Score=44.17 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=29.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~ 86 (488)
+++|+|.|+|+-|...+..|.+.|+ +|+.+.+.
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~g~---~V~~~~r~ 37 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQGW---RIIGTSRN 37 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGGTC---EEEEEESC
T ss_pred cCcEEEECCcHHHHHHHHHHHHCCC---EEEEEEcC
Confidence 4689999999999999999999987 89988764
No 476
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Probab=87.90 E-value=0.56 Score=45.46 Aligned_cols=35 Identities=20% Similarity=0.113 Sum_probs=30.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
...+|+|||+|.+|+.++..++..|. +|+++|..+
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga---~V~~~d~~~ 205 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLGA---VVMATDVRA 205 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 45799999999999999999999886 799998664
No 477
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=87.88 E-value=0.61 Score=46.79 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=32.8
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCcC
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHL 242 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g-~~v~lv~~~~~~ 242 (488)
...+++|||+|..|+-+|..|.+.| .+|+++++.+++
T Consensus 8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~ 45 (484)
T 4dsg_A 8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTP 45 (484)
T ss_dssp CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSS
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 3468999999999999999999998 799999988654
No 478
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=87.84 E-value=0.54 Score=36.40 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=29.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCC-CcEEEEecC
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPE 239 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g-~~v~lv~~~ 239 (488)
.++++|+|+|.+|..++..|.+.| .+|+++.+.
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~ 38 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHD 38 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence 468999999999999999999999 788888764
No 479
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A*
Probab=87.81 E-value=0.46 Score=44.70 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=30.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
..++|.|||+|.-|...|..|++.|+ +|+++|.++
T Consensus 5 ~~~kI~vIGaG~MG~~iA~~la~~G~---~V~l~d~~~ 39 (319)
T 2dpo_A 5 AAGDVLIVGSGLVGRSWAMLFASGGF---RVKLYDIEP 39 (319)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTC---CEEEECSCH
T ss_pred CCceEEEEeeCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 45789999999999999999999988 899999764
No 480
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=87.81 E-value=0.47 Score=44.52 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=30.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
...+|.|||+|.-|...|..++..|+ +|+|+|.++
T Consensus 5 ~~~~VaViGaG~MG~giA~~~a~~G~---~V~l~D~~~ 39 (319)
T 3ado_A 5 AAGDVLIVGSGLVGRSWAMLFASGGF---RVKLYDIEP 39 (319)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTC---CEEEECSCH
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCC---eEEEEECCH
Confidence 35689999999999999999999998 899999765
No 481
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=87.69 E-value=0.44 Score=46.63 Aligned_cols=34 Identities=15% Similarity=0.415 Sum_probs=30.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
+.+|+|||.|.-|...|..|.+.|+ +|++||.++
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~---~vvvId~d~ 37 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGV---KMVVLDHDP 37 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC---CEEEEECCH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC---CEEEEECCH
Confidence 4579999999999999999999987 799999774
No 482
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=87.68 E-value=0.43 Score=44.36 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=29.3
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~ 86 (488)
++|.|||+|.-|.+.|..|.+.|. +|++++++
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~---~V~~~~r~ 34 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLP---HTTLIGRH 34 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCT---TCEEEESS
T ss_pred cEEEEECCCHHHHHHHHHHHHCCC---eEEEEEec
Confidence 589999999999999999999986 89999876
No 483
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=87.53 E-value=0.65 Score=40.66 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=29.8
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
..++|.|||+|.-|.+.|..|.+.|+ +|+++++++
T Consensus 18 ~~~~I~iiG~G~mG~~la~~l~~~g~---~V~~~~~~~ 52 (209)
T 2raf_A 18 QGMEITIFGKGNMGQAIGHNFEIAGH---EVTYYGSKD 52 (209)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTC---EEEEECTTC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEcCCH
Confidence 35689999999999999999999886 899998664
No 484
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}
Probab=87.48 E-value=0.67 Score=43.81 Aligned_cols=35 Identities=11% Similarity=0.247 Sum_probs=30.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
+.+|.|||+|.-|...|..|++.|+- +|+++|.++
T Consensus 14 ~~kI~ViGaG~vG~~iA~~la~~g~~--~V~L~Di~~ 48 (328)
T 2hjr_A 14 RKKISIIGAGQIGSTIALLLGQKDLG--DVYMFDIIE 48 (328)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCC--EEEEECSST
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCC--eEEEEECCH
Confidence 46899999999999999999998762 599999763
No 485
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=87.39 E-value=0.68 Score=37.25 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=29.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~ 239 (488)
.++++|+|+|.+|..++..|.+.|.+|+++.+.
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~ 38 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN 38 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 568999999999999999999999999988764
No 486
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=87.35 E-value=0.73 Score=42.49 Aligned_cols=33 Identities=15% Similarity=0.320 Sum_probs=29.3
Q ss_pred CCeEEEEcC-chHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351 51 NREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKE 86 (488)
Q Consensus 51 ~~~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~lie~~ 86 (488)
+.+|.|||+ |.-|...|..|.+.|+ +|++++++
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~---~V~~~~r~ 44 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAH---HLAAIEIA 44 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSS---EEEEECCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC---EEEEEECC
Confidence 468999999 9999999999999886 79988754
No 487
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=87.33 E-value=0.57 Score=43.98 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=32.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc
Q 011351 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 243 (488)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l 243 (488)
.++|.|||+|..|.-+|..++..|.+|++++..+..+
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l 42 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQI 42 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHH
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHH
Confidence 5789999999999999999999999999998776443
No 488
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}
Probab=87.33 E-value=0.67 Score=43.43 Aligned_cols=33 Identities=9% Similarity=0.227 Sum_probs=29.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~ 86 (488)
..+|.|||+|.-|...|..|.+.|+ +|++++++
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g~---~V~~~~~~ 62 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMGH---TVTVWNRT 62 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTC---CEEEECSS
T ss_pred CCeEEEEcccHHHHHHHHHHHhCCC---EEEEEeCC
Confidence 4689999999999999999999886 79998765
No 489
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=87.30 E-value=0.57 Score=44.49 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=29.7
Q ss_pred CCCeEEEEcC-chHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 50 ENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 50 ~~~~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
.+++|+|.|| |.-|...+..|.+.|+ +|+++.+.+
T Consensus 9 ~~~~IlVtGatG~iG~~l~~~L~~~g~---~V~~l~R~~ 44 (346)
T 3i6i_A 9 PKGRVLIAGATGFIGQFVATASLDAHR---PTYILARPG 44 (346)
T ss_dssp --CCEEEECTTSHHHHHHHHHHHHTTC---CEEEEECSS
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCCC---CEEEEECCC
Confidence 3568999999 9999999999999986 799988764
No 490
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=87.26 E-value=0.54 Score=41.44 Aligned_cols=34 Identities=15% Similarity=0.346 Sum_probs=30.1
Q ss_pred CCeEEEEcC-chHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 51 NREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 51 ~~~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
+++|+|.|| |.-|...+..|.+.|+ +|+++++.+
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~---~V~~~~r~~ 38 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGF---EVTAVVRHP 38 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTC---EEEEECSCG
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC---EEEEEEcCc
Confidence 468999996 9999999999999986 899998764
No 491
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=87.25 E-value=0.42 Score=43.79 Aligned_cols=34 Identities=24% Similarity=0.492 Sum_probs=31.6
Q ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (488)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~ 239 (488)
.+++++|||+|.+|...+..|.+.|.+|+++.+.
T Consensus 12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~ 45 (274)
T 1kyq_A 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (274)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence 5789999999999999999999999999999764
No 492
>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}
Probab=87.23 E-value=0.68 Score=45.50 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=32.8
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
.+.+.+|.|||.|..|+..|..|++.|+ +|+.+|-++
T Consensus 18 ~~~m~~IaViGlGYVGLp~A~~~A~~G~---~V~g~Did~ 54 (444)
T 3vtf_A 18 GSHMASLSVLGLGYVGVVHAVGFALLGH---RVVGYDVNP 54 (444)
T ss_dssp TCCCCEEEEECCSHHHHHHHHHHHHHTC---EEEEECSCH
T ss_pred CCCCCEEEEEccCHHHHHHHHHHHhCCC---cEEEEECCH
Confidence 3457899999999999999999999988 899999764
No 493
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=87.23 E-value=0.64 Score=45.04 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=33.8
Q ss_pred ccCCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351 46 SFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (488)
Q Consensus 46 ~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 88 (488)
||.+++++|+|+|+|..|...+..+++.|+ ++.+++..+.
T Consensus 6 pm~~~~~~ili~g~g~~~~~~~~a~~~~G~---~v~~~~~~~~ 45 (391)
T 1kjq_A 6 ALRPAATRVMLLGSGELGKEVAIECQRLGV---EVIAVDRYAD 45 (391)
T ss_dssp TTSTTCCEEEEESCSHHHHHHHHHHHTTTC---EEEEEESSTT
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCC---EEEEEECCCC
Confidence 444566899999999999999999999987 7999987654
No 494
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=87.22 E-value=0.59 Score=46.35 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=30.3
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
.+|.|||.|.-|+..|..|++.|+ +|+++|.++
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~---~V~~~D~~~ 35 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGA---NVRCIDTDR 35 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred CEEEEECcCHHHHHHHHHHHhcCC---EEEEEECCH
Confidence 589999999999999999999987 899999764
No 495
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=87.07 E-value=0.37 Score=47.70 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=29.5
Q ss_pred CeEEEECCCHHHHHHHHHHHhCC-CcEEEEec
Q 011351 208 KKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFP 238 (488)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g-~~v~lv~~ 238 (488)
..|+|||+|..|+-+|..|++.| .+|+++++
T Consensus 24 ~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~ 55 (448)
T 3axb_A 24 FDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA 55 (448)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCSCEEEEES
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 47999999999999999999999 99999998
No 496
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*
Probab=87.07 E-value=0.72 Score=42.11 Aligned_cols=33 Identities=18% Similarity=0.442 Sum_probs=29.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~ 86 (488)
.++++|||+|-+|-+++..|.+.|. +|+|+.+.
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~---~v~V~nRt 150 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGL---QVSVLNRS 150 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCC
Confidence 6799999999999999999999984 89998765
No 497
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=87.06 E-value=0.45 Score=44.28 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=30.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
++++|.|||.|.-|...|..|++.|+ +|+++++++
T Consensus 14 ~~~~I~vIG~G~mG~~~A~~l~~~G~---~V~~~dr~~ 48 (296)
T 3qha_A 14 EQLKLGYIGLGNMGAPMATRMTEWPG---GVTVYDIRI 48 (296)
T ss_dssp -CCCEEEECCSTTHHHHHHHHTTSTT---CEEEECSST
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCH
Confidence 35689999999999999999999987 799988654
No 498
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}
Probab=86.87 E-value=0.69 Score=43.19 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=29.9
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
+|+|||+|..|.+.|..|+..|+ ..+|+++|.++
T Consensus 2 kI~VIGaG~vG~~la~~la~~g~-~~eV~L~D~~~ 35 (304)
T 2v6b_A 2 KVGVVGTGFVGSTAAFALVLRGS-CSELVLVDRDE 35 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSH
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCCH
Confidence 79999999999999999999876 45799999763
No 499
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A
Probab=86.85 E-value=0.66 Score=44.53 Aligned_cols=33 Identities=30% Similarity=0.390 Sum_probs=29.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~ 86 (488)
..+|+|+|+|.+|..++..|+..|. +|+++++.
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~Ga---~V~v~dr~ 199 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLGA---QVQIFDIN 199 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC---EEEEEeCC
Confidence 4799999999999999999999886 89999865
No 500
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Probab=86.80 E-value=0.78 Score=43.11 Aligned_cols=35 Identities=17% Similarity=0.370 Sum_probs=30.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (488)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 87 (488)
+.+|.|||+|.-|...|..|++.|+. +|+++|.++
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~~g~~--~V~l~D~~~ 38 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKDNLA--DVVLFDIAE 38 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCC--EEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCc--eEEEEeCCc
Confidence 46899999999999999999998752 699998753
Done!