BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011352
         (488 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4B4T|S Chain S, Near-Atomic Resolution Structural Model Of The Yeast 26s
           Proteasome
          Length = 523

 Score =  217 bits (552), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 128/356 (35%), Positives = 197/356 (55%), Gaps = 20/356 (5%)

Query: 116 ELEIYCYLLVLIFLIDKKRYNEAKACSSASIA--RLKNMNRRTVDVLAARLYFYYSLCYE 173
           E+  + +LLV +FL D K   +    +   +    L   N R+++++ A+L+FY  L +E
Sbjct: 133 EINCFMHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHE 192

Query: 174 LTGDLAE----------IRGNLLALHRIATLRHDELGQETXXXXXXXXXXXXXXXDQAEK 223
                +E          +R  ++   +IA+L+HD   +                 D A  
Sbjct: 193 TLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASD 252

Query: 224 LRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP--VAALGFRV 279
             SK   P  +  S+ +  RY FYL KI  IQL+Y+ A E ++ A RKAP    +LGF  
Sbjct: 253 FISKLEYPHTDVSSSLE-ARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQ 311

Query: 280 QCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSVAEKFSSTF 339
           Q NK    ++LL+G+IPE + F Q  M+K+L PY+ LT AV++GDL+ F S   K+    
Sbjct: 312 QSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKAVKLGDLKKFTSTITKYKQLL 371

Query: 340 SSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIR 399
             D T  L VRLR NVI+TG+R IS++Y +ISL D+  KL LDS   V   E +VS+AIR
Sbjct: 372 LKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTV---EYMVSRAIR 428

Query: 400 DGAIDATVDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPN 455
           DG I+A ++H +G++ + E  +IY + +PQ  F+ RI F   +H+E + ++R+P +
Sbjct: 429 DGVIEAKINHEDGFIETTELLNIYDSEDPQQVFDERIKFANQLHDEYLVSMRYPED 484


>pdb|2QPN|A Chain A, Ges-1 Beta-Lactamase
 pdb|2QPN|B Chain B, Ges-1 Beta-Lactamase
          Length = 287

 Score = 28.5 bits (62), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 7/68 (10%)

Query: 360 LRNISISYSRIS-----LADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHA-NGW 413
            R I  S SR+      + D       D+  P+A A + V+K +  GA+ +T  H    W
Sbjct: 147 FRKIGDSVSRLDRKEPEMGDNTPGDLRDTTTPIAMART-VAKVLYGGALTSTSTHTIERW 205

Query: 414 MVSKETGD 421
           ++  +TGD
Sbjct: 206 LIGNQTGD 213


>pdb|3V3S|A Chain A, Crystal Structure Of Ges-18
 pdb|3V3S|B Chain B, Crystal Structure Of Ges-18
          Length = 287

 Score = 28.5 bits (62), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%)

Query: 360 LRNISISYSRIS-----LADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHA-NGW 413
            R I  S SR+      ++D       D+  P+A A + V+K +  GA+ +T  H    W
Sbjct: 147 FRKIGDSVSRLDRKEPEMSDNTPGDLRDTTTPIAMART-VAKVLYGGALTSTSTHTIERW 205

Query: 414 MVSKETGD 421
           ++  +TGD
Sbjct: 206 LIGNQTGD 213


>pdb|3V3R|A Chain A, Crystal Structure Of Ges-11
 pdb|3V3R|B Chain B, Crystal Structure Of Ges-11
          Length = 287

 Score = 28.5 bits (62), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 7/68 (10%)

Query: 360 LRNISISYSRIS-----LADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHA-NGW 413
            R I  S SR+      + D       D+  P+A A + V+K +  GA+ +T  H    W
Sbjct: 147 FRKIGDSVSRLDRKEPEMGDNTPGDLRDTTTPIAMART-VAKVLYGGALTSTSTHTIERW 205

Query: 414 MVSKETGD 421
           ++  +TGD
Sbjct: 206 LIGNQTGD 213


>pdb|3TSG|A Chain A, Crystal Structure Of Ges-14
 pdb|3TSG|B Chain B, Crystal Structure Of Ges-14
          Length = 287

 Score = 28.5 bits (62), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%)

Query: 360 LRNISISYSRIS-----LADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHA-NGW 413
            R I  S SR+      ++D       D+  P+A A + V+K +  GA+ +T  H    W
Sbjct: 147 FRKIGDSVSRLDRKEPEMSDNTPGDLRDTTTPIAMART-VAKVLYGGALTSTSTHTIERW 205

Query: 414 MVSKETGD 421
           ++  +TGD
Sbjct: 206 LIGNQTGD 213


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.133    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,964,937
Number of Sequences: 62578
Number of extensions: 425278
Number of successful extensions: 845
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 841
Number of HSP's gapped (non-prelim): 8
length of query: 488
length of database: 14,973,337
effective HSP length: 103
effective length of query: 385
effective length of database: 8,527,803
effective search space: 3283204155
effective search space used: 3283204155
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)