BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011352
(488 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P93768|PSMD3_TOBAC Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Nicotiana tabacum GN=21D7 PE=2 SV=1
Length = 488
Score = 862 bits (2227), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/489 (91%), Positives = 463/489 (94%), Gaps = 2/489 (0%)
Query: 1 MTQDVEMKDKENP-SNSLSSPFTPSTLHHLKEIASLMETGAHAREVRRIMRAVRLTMALR 59
MTQDVEMK++ P SNSLSS PS HHLKEIASL+ETGA+AREVRRI RAVRLTMALR
Sbjct: 1 MTQDVEMKEQAAPPSNSLSST-APSIFHHLKEIASLIETGAYAREVRRISRAVRLTMALR 59
Query: 60 RKLKAPVLSAFLNFALAPGSEAHSRLLSYLPKEDEHEMEVDTASSGAPAPAKHPLPELEI 119
+KLKA LSAFLN+ L PGSE HSRL S+LPKEDE +MEVDTA+SGA AP K+PLPELEI
Sbjct: 60 KKLKASSLSAFLNYVLVPGSEVHSRLSSFLPKEDEQDMEVDTATSGAQAPIKNPLPELEI 119
Query: 120 YCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLA 179
YCYLLVLIFLID+K+YNEAKACSSASIARLK +NRRTVDVLA+RLYFYYSLCYELTGDLA
Sbjct: 120 YCYLLVLIFLIDQKKYNEAKACSSASIARLKTVNRRTVDVLASRLYFYYSLCYELTGDLA 179
Query: 180 EIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQF 239
EIRG LLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQF
Sbjct: 180 EIRGYLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQF 239
Query: 240 CRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPERT 299
RYLFYLGKIRTIQLEYTDAKESLLQAARKAP AALGFRVQCNKWAIIVRLLLGEIPERT
Sbjct: 240 SRYLFYLGKIRTIQLEYTDAKESLLQAARKAPQAALGFRVQCNKWAIIVRLLLGEIPERT 299
Query: 300 VFMQKGMEKALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTG 359
VFMQKGMEKALRPYFELTNAVRIGDLELF+ VAEKFSSTFSSD TNNLIVRLRHNVIRTG
Sbjct: 300 VFMQKGMEKALRPYFELTNAVRIGDLELFRKVAEKFSSTFSSDGTNNLIVRLRHNVIRTG 359
Query: 360 LRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKET 419
LRNISISYSRISL DVAKKLRLDS NPVADAESIVSKAIRDGAIDAT+DHANGWMVSKET
Sbjct: 360 LRNISISYSRISLVDVAKKLRLDSPNPVADAESIVSKAIRDGAIDATLDHANGWMVSKET 419
Query: 420 GDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSHKEKESAEKRRERQQQEQELAKH 479
GDIYSTNEPQ+AFNSRIAFCLNMHNEAVRALRFPPNSHKEKESAEKRRERQQQEQELAKH
Sbjct: 420 GDIYSTNEPQIAFNSRIAFCLNMHNEAVRALRFPPNSHKEKESAEKRRERQQQEQELAKH 479
Query: 480 IAEEDDDEF 488
IAEEDDD+F
Sbjct: 480 IAEEDDDDF 488
>sp|Q06364|PSMD3_DAUCA Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Daucus
carota GN=21D7 PE=1 SV=2
Length = 489
Score = 842 bits (2176), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/490 (87%), Positives = 462/490 (94%), Gaps = 3/490 (0%)
Query: 1 MTQDVEMKD--KENPSNSLSSPFTPSTLHHLKEIASLMETGAHAREVRRIMRAVRLTMAL 58
MTQDVEMK+ PSNS+++ TPSTL HLKEIASL+E+GA+AREVRRI+RAVRLT+AL
Sbjct: 1 MTQDVEMKEVPAPAPSNSVTAA-TPSTLQHLKEIASLIESGAYAREVRRILRAVRLTIAL 59
Query: 59 RRKLKAPVLSAFLNFALAPGSEAHSRLLSYLPKEDEHEMEVDTASSGAPAPAKHPLPELE 118
R+KL A V++AFLNF+L PGSE H+RL SYLPKEDEH+MEVDTA S AKH LPELE
Sbjct: 60 RKKLNASVVNAFLNFSLVPGSEVHARLASYLPKEDEHDMEVDTAMSATTTLAKHSLPELE 119
Query: 119 IYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDL 178
IYCYLLVLIFLID+K+Y+EAKACSSASIAR+KN+NRRTV+VLA+RLYFYYSL YELTGDL
Sbjct: 120 IYCYLLVLIFLIDQKKYSEAKACSSASIARVKNLNRRTVEVLASRLYFYYSLSYELTGDL 179
Query: 179 AEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQ 238
AEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQ
Sbjct: 180 AEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQ 239
Query: 239 FCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPER 298
FCRYLFYLGKIRTIQLEYTDAKES LQAARKAPVAALGFRVQCNKWA+IVRLLLGEIPER
Sbjct: 240 FCRYLFYLGKIRTIQLEYTDAKESXLQAARKAPVAALGFRVQCNKWAVIVRLLLGEIPER 299
Query: 299 TVFMQKGMEKALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRT 358
TVFMQKGMEKALRPYF LTNAVRIGDLELF+ VA+KF+STF++DRT+NLIVRLRHNVIRT
Sbjct: 300 TVFMQKGMEKALRPYFXLTNAVRIGDLELFRXVADKFASTFTADRTHNLIVRLRHNVIRT 359
Query: 359 GLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKE 418
GLRNISISYSRISL DVA+KLRLDS NPVADAESIVSKAIRDGAIDAT+DHANGWMVSKE
Sbjct: 360 GLRNISISYSRISLVDVARKLRLDSPNPVADAESIVSKAIRDGAIDATIDHANGWMVSKE 419
Query: 419 TGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSHKEKESAEKRRERQQQEQELAK 478
TGDIYSTNEPQ AFNSRIAFCLNMHNEAVRALRFP NSHK+KESAEKRRERQQQEQELAK
Sbjct: 420 TGDIYSTNEPQAAFNSRIAFCLNMHNEAVRALRFPANSHKDKESAEKRRERQQQEQELAK 479
Query: 479 HIAEEDDDEF 488
HIAEEDDDEF
Sbjct: 480 HIAEEDDDEF 489
>sp|Q9LNU4|PSD31_ARATH Probable 26S proteasome non-ATPase regulatory subunit 3a
OS=Arabidopsis thaliana GN=EMB2719 PE=1 SV=3
Length = 488
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/489 (82%), Positives = 447/489 (91%), Gaps = 2/489 (0%)
Query: 1 MTQDVEMKDKENPSNSLSSPFTPSTLHHLKEIASLMETGAHAREVRRIMRAVRLTMALRR 60
MTQDVEMKD PS S+ S + ST+ +LKEIA+L++TG++ +EVRRI RAVRLT+ LR+
Sbjct: 1 MTQDVEMKDNNTPSQSIISS-STSTMQNLKEIAALIDTGSYTKEVRRIARAVRLTIGLRQ 59
Query: 61 KLKAPVLSAFLNFALAPGSEAHSRLLSYLPKEDEHEMEVDTASSGA-PAPAKHPLPELEI 119
KL VLS+FL+FAL PGSEAHSRL S++PK DEH+MEVDTASS AP+KH ELEI
Sbjct: 60 KLTGSVLSSFLDFALVPGSEAHSRLSSFVPKGDEHDMEVDTASSATQAAPSKHLPAELEI 119
Query: 120 YCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLA 179
YCY +VL+FLID+K+YNEAKACSSASIARLKN+NRRT+DV+A+RLYFYYSL YE TGDLA
Sbjct: 120 YCYFIVLLFLIDQKKYNEAKACSSASIARLKNVNRRTIDVIASRLYFYYSLSYEQTGDLA 179
Query: 180 EIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQF 239
EIRG LLALH ATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQF
Sbjct: 180 EIRGTLLALHHSATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQF 239
Query: 240 CRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPERT 299
CRYLFYLGKIRTIQLEYTDAKESLLQAARKAP+AALGFR+QCNKWAI+VRLLLGEIPER+
Sbjct: 240 CRYLFYLGKIRTIQLEYTDAKESLLQAARKAPIAALGFRIQCNKWAILVRLLLGEIPERS 299
Query: 300 VFMQKGMEKALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTG 359
+F QKGMEKALRPYFELTNAVRIGDLELF++V EKF TF+ DRT+NLIVRLRHNVIRTG
Sbjct: 300 IFTQKGMEKALRPYFELTNAVRIGDLELFRTVQEKFLDTFAQDRTHNLIVRLRHNVIRTG 359
Query: 360 LRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKET 419
LRNISISYSRISL DVAKKLRL+S NPVADAESIV+KAIRDGAIDAT+DH NG MVSKET
Sbjct: 360 LRNISISYSRISLPDVAKKLRLNSENPVADAESIVAKAIRDGAIDATIDHKNGCMVSKET 419
Query: 420 GDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSHKEKESAEKRRERQQQEQELAKH 479
GDIYSTNEPQ AFNSRIAFCLNMHNEAVRALRFPPN+HKEKES EKRRER+QQE+ELAKH
Sbjct: 420 GDIYSTNEPQTAFNSRIAFCLNMHNEAVRALRFPPNTHKEKESDEKRRERKQQEEELAKH 479
Query: 480 IAEEDDDEF 488
+AEEDDD+F
Sbjct: 480 MAEEDDDDF 488
>sp|Q9LQR8|PSD32_ARATH Probable 26S proteasome non-ATPase regulatory subunit 3b
OS=Arabidopsis thaliana GN=At1g75990 PE=2 SV=2
Length = 487
Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/488 (81%), Positives = 444/488 (90%), Gaps = 1/488 (0%)
Query: 1 MTQDVEMKDKENPSNSLSSPFTPSTLHHLKEIASLMETGAHAREVRRIMRAVRLTMALRR 60
MTQDVEMKD + P+ S+ S T STL +LKEIA+L++TG++ +EVRRI RAVRLT+ LRR
Sbjct: 1 MTQDVEMKDNQTPTQSVVSAPT-STLQNLKEIAALIDTGSYTKEVRRIARAVRLTVGLRR 59
Query: 61 KLKAPVLSAFLNFALAPGSEAHSRLLSYLPKEDEHEMEVDTASSGAPAPAKHPLPELEIY 120
KL V+S+FL+FAL PGSEAH+RL S++PK DEH+MEVDTASS + AP KH ELEIY
Sbjct: 60 KLTGSVISSFLDFALVPGSEAHTRLSSFVPKSDEHDMEVDTASSNSQAPPKHLPAELEIY 119
Query: 121 CYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAE 180
CY +VL+FLID+K+YNEAK CS+ASIARLK++NRRTVDV+A++LYFYYSL YELT DLAE
Sbjct: 120 CYFIVLLFLIDQKKYNEAKVCSTASIARLKSVNRRTVDVIASKLYFYYSLSYELTNDLAE 179
Query: 181 IRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFC 240
IR LLALH ATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFC
Sbjct: 180 IRSTLLALHHSATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFC 239
Query: 241 RYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPERTV 300
RYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA+LGFR+QCNKWAIIVRLLLGEIPER++
Sbjct: 240 RYLFYLGKIRTIQLEYTDAKESLLQAARKAPVASLGFRIQCNKWAIIVRLLLGEIPERSI 299
Query: 301 FMQKGMEKALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGL 360
F QKGMEK LRPYFELTNAVRIGDLELF + EKF+ TF+ DRT+NLIVRLRHNVIRTGL
Sbjct: 300 FTQKGMEKTLRPYFELTNAVRIGDLELFGKIQEKFAKTFAEDRTHNLIVRLRHNVIRTGL 359
Query: 361 RNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKETG 420
RNISISYSRISL DVA+KLRL+SANPVADAESIV+KAIRDGAIDAT+DH NG MVSKETG
Sbjct: 360 RNISISYSRISLQDVAQKLRLNSANPVADAESIVAKAIRDGAIDATIDHKNGCMVSKETG 419
Query: 421 DIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSHKEKESAEKRRERQQQEQELAKHI 480
DIYSTNEPQ AFNSRIAFCLNMHNEAVRALRFPPN+H+EKES EKRRE +QQE+ELAK++
Sbjct: 420 DIYSTNEPQTAFNSRIAFCLNMHNEAVRALRFPPNTHREKESEEKRREMKQQEEELAKYM 479
Query: 481 AEEDDDEF 488
AEEDDD+F
Sbjct: 480 AEEDDDDF 487
>sp|P25161|PSMD3_DROME Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Drosophila melanogaster GN=Rpn3 PE=2 SV=1
Length = 494
Score = 395 bits (1015), Expect = e-109, Method: Compositional matrix adjust.
Identities = 224/469 (47%), Positives = 308/469 (65%), Gaps = 11/469 (2%)
Query: 24 STLHHLKEIASLMETGAHAREVRRIMRAVRLTMALRRKLKAPVLSAFLNFA--LAPGSEA 81
+ + ++E +E G ++E R I+R +R RRKL V F N A + P
Sbjct: 33 AAVQEIREQIRQIEKGVASKESRFILRVLRNLPNTRRKLNGVV---FRNLAQSIYPAGAD 89
Query: 82 HSRLLSYLPKEDEHEMEVDTASSGAPAPAKHPLPELEIYCYLLVLIFLIDKKRYNEAKAC 141
++ +P ++ E+ A K P+ E++ Y YLL+L+ LID A
Sbjct: 90 REAAVALMPAVEKDATELPDVPKKQVA-TKAPIAEVDAYFYLLLLVKLIDASDLKRAGIS 148
Query: 142 SSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQ 201
+ A +A++ NRRT+D++ A+ YFY+S EL L IR L A R ATLR+D GQ
Sbjct: 149 ADALMAKISIQNRRTLDLIGAKSYFYFSRVAELKNSLEGIRSFLHARLRTATLRNDFEGQ 208
Query: 202 ETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKE 261
L+N LLRNYLHY LYDQA+KL K+ E+ SN ++ R+L+YLG+I+ +LEY+DA +
Sbjct: 209 AVLINCLLRNYLHYALYDQADKLVKKSVYPESASNNEWARFLYYLGRIKAAKLEYSDAHK 268
Query: 262 SLLQAARKAPV-AALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAV 320
L+QA RK+P AA+GFR K I+V LLLG IPER VF Q G+ ++L YF+LT AV
Sbjct: 269 HLVQALRKSPQHAAIGFRQTVQKLIIVVELLLGNIPERVVFRQAGLRQSLGAYFQLTQAV 328
Query: 321 RIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLR 380
R+G+L+ F V ++ F D T LI+RLRHNVI+T +R+I +SYSRIS D+AK+L
Sbjct: 329 RLGNLKRFGDVVSQYGPKFQLDHTFTLIIRLRHNVIKTAIRSIGLSYSRISPQDIAKRLM 388
Query: 381 LDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCL 440
LDSA DAE IVSKAIRDG I+AT+D A +M SKE+ DIYST EPQLAF+ RI+FCL
Sbjct: 389 LDSAE---DAEFIVSKAIRDGVIEATLDPAQNFMRSKESTDIYSTREPQLAFHERISFCL 445
Query: 441 NMHNEAVRALRFPPNSH-KEKESAEKRRERQQQEQELAKHIAEEDDDEF 488
N+HN++V+A+R+PP S+ K+ ESAE+RRER+QQ+ ELAK +AE+D+D F
Sbjct: 446 NLHNQSVKAMRYPPKSYGKDLESAEERREREQQDLELAKEMAEDDEDGF 494
>sp|O43242|PSMD3_HUMAN 26S proteasome non-ATPase regulatory subunit 3 OS=Homo sapiens
GN=PSMD3 PE=1 SV=2
Length = 534
Score = 391 bits (1004), Expect = e-108, Method: Compositional matrix adjust.
Identities = 225/466 (48%), Positives = 313/466 (67%), Gaps = 5/466 (1%)
Query: 25 TLHHLKEIASLMETGAHAREVRRIMRAVRLTMALRRKLKAPVLSAFLNFALAPGSEAHSR 84
TL +KE +E +E R ++RA+R+ + R+L VL + +
Sbjct: 71 TLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVQGFFTSNNATRDF 130
Query: 85 LLSYLPKEDEHEMEVDTASSGAPAPAKHPLPELEIYCYLLVLIFLIDKKRYNEAKACSSA 144
LL +L + + E ++ A + LPE+E Y LLV+IF+++ KRY EA+ S
Sbjct: 131 LLPFLEEPMDTEADLQFRPRTGKAASTPLLPEVEAYLQLLVVIFMMNSKRYKEAQKISDD 190
Query: 145 SIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETL 204
+ ++ NRR +D++AA+ Y+Y++ YE L +R L A R ATLRHD GQ TL
Sbjct: 191 LMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATLRHDADGQATL 250
Query: 205 LNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLL 264
LNLLLRNYLHY+LYDQAEKL SK+ E +N ++ RYL+Y G+I+ IQLEY++A+ ++
Sbjct: 251 LNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMT 310
Query: 265 QAARKAPV-AALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIG 323
A RKAP A+GF+ +K I+V LLLGEIP+R F Q ++++L PYF LT AVR G
Sbjct: 311 NALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTG 370
Query: 324 DLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDS 383
+L F V ++F F +D T LI+RLRHNVI+TG+R IS+SYSRISLAD+A+KL+LDS
Sbjct: 371 NLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDS 430
Query: 384 ANPVADAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMH 443
DAE IV+KAIRDG I+A+++H G++ SKE DIYST EPQLAF+ RI+FCL++H
Sbjct: 431 PE---DAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRISFCLDIH 487
Query: 444 NEAVRALRFPPNSH-KEKESAEKRRERQQQEQELAKHIAEEDDDEF 488
N +V+A+RFPP S+ K+ ESAE+RRER+QQ+ E AK +AE+DDD F
Sbjct: 488 NMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSF 533
>sp|Q2KJ46|PSMD3_BOVIN 26S proteasome non-ATPase regulatory subunit 3 OS=Bos taurus
GN=PSMD3 PE=2 SV=1
Length = 534
Score = 390 bits (1003), Expect = e-108, Method: Compositional matrix adjust.
Identities = 225/466 (48%), Positives = 314/466 (67%), Gaps = 5/466 (1%)
Query: 25 TLHHLKEIASLMETGAHAREVRRIMRAVRLTMALRRKLKAPVLSAFLNFALAPGSEAHSR 84
TL +KE +E +E R ++RA+R+ + R+L VL ++ +
Sbjct: 71 TLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVHGFFTSNNATRDF 130
Query: 85 LLSYLPKEDEHEMEVDTASSGAPAPAKHPLPELEIYCYLLVLIFLIDKKRYNEAKACSSA 144
LL +L + + E ++ A + LPE+E Y LL++IFL++ KRY EA+ S
Sbjct: 131 LLPFLEEPMDTEADLQFRPRTGKAASAPLLPEVEAYLQLLMVIFLMNSKRYKEAQKISDD 190
Query: 145 SIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETL 204
+ ++ NRR +D++AA+ Y+Y++ YE L +R L A R ATLRHD GQ TL
Sbjct: 191 LMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATLRHDTDGQATL 250
Query: 205 LNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLL 264
LNLLLRNYLHY+LYDQAEKL SK+ E +N ++ RYL+Y G+I+ IQLEY++A+ ++
Sbjct: 251 LNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMT 310
Query: 265 QAARKAPV-AALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIG 323
A RKAP A+GF+ +K I+V LLLGEIP+R F Q ++++L PYF LT AVR G
Sbjct: 311 NALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTG 370
Query: 324 DLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDS 383
+L F V ++F F +D T LI+RLRHNVI+TG+R IS+SYSRISLAD+A+KL+LDS
Sbjct: 371 NLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDS 430
Query: 384 ANPVADAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMH 443
DAE IV+KAIRDG I+A+++H G++ SKE DIYST EPQLAF+ RI+FCL++H
Sbjct: 431 PE---DAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRISFCLDIH 487
Query: 444 NEAVRALRFPPNSH-KEKESAEKRRERQQQEQELAKHIAEEDDDEF 488
N +V+A+RFPP S+ K+ ESAE+RRER+QQ+ E AK +AE+DDD F
Sbjct: 488 NMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSF 533
>sp|P14685|PSMD3_MOUSE 26S proteasome non-ATPase regulatory subunit 3 OS=Mus musculus
GN=Psmd3 PE=1 SV=3
Length = 530
Score = 390 bits (1002), Expect = e-107, Method: Compositional matrix adjust.
Identities = 225/466 (48%), Positives = 314/466 (67%), Gaps = 5/466 (1%)
Query: 25 TLHHLKEIASLMETGAHAREVRRIMRAVRLTMALRRKLKAPVLSAFLNFALAPGSEAHSR 84
TL +KE +E +E R ++RA+R+ + R+L VL ++ +
Sbjct: 67 TLEDIKEHVRQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVHGFFTSNNATRDF 126
Query: 85 LLSYLPKEDEHEMEVDTASSGAPAPAKHPLPELEIYCYLLVLIFLIDKKRYNEAKACSSA 144
LL +L + + E ++ A + LPE+E Y LL++IFL++ KRY EA+ S
Sbjct: 127 LLPFLEEPMDTEADLQFRPRTGKAASAPLLPEVEAYLQLLMVIFLMNSKRYKEAQKISDD 186
Query: 145 SIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETL 204
+ ++ NRR +D++AA+ Y+Y++ YE L +R L A R ATLRHD GQ TL
Sbjct: 187 LMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATLRHDADGQATL 246
Query: 205 LNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLL 264
LNLLLRNYLHY+LYDQAEKL SK+ E +N ++ RYL+Y G+I+ IQLEY++A+ ++
Sbjct: 247 LNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMT 306
Query: 265 QAARKAPV-AALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIG 323
A RKAP A+GF+ +K I+V LLLGEIP+R F Q ++++L PYF LT AVR G
Sbjct: 307 NALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTG 366
Query: 324 DLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDS 383
+L F V ++F F +D T LI+RLRHNVI+TG+R IS+SYSRISLAD+A+KL+LDS
Sbjct: 367 NLAKFNQVLDQFGEKFQTDGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDS 426
Query: 384 ANPVADAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMH 443
DAE IV+KAIRDG I+A+++H G++ SKE DIYST EPQLAF+ RI+FCL++H
Sbjct: 427 PE---DAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRISFCLDIH 483
Query: 444 NEAVRALRFPPNSH-KEKESAEKRRERQQQEQELAKHIAEEDDDEF 488
N +V+A+RFPP S+ K+ ESAE+RRER+QQ+ E AK +AE+DDD F
Sbjct: 484 NMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSF 529
>sp|O61470|PSMD3_ANOGA Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Anopheles gambiae GN=Dox-A2 PE=3 SV=2
Length = 496
Score = 379 bits (974), Expect = e-104, Method: Compositional matrix adjust.
Identities = 229/487 (47%), Positives = 319/487 (65%), Gaps = 9/487 (1%)
Query: 4 DVEMKDKENPSNSLSSPFTPSTLHHLKEIASLMETGAHAREVRRIMRAVRLTMALRRKLK 63
DVEM+ E+ + + + +++ A ++ ++E R I+R +R RRKL
Sbjct: 17 DVEMESAED-AEAAKKDAELLAVQEIRDHARQIDKAVVSKEPRFILRVLRSLPTTRRKL- 74
Query: 64 APVLSAFLNFALAPGSEAHSRLLSYLPKEDEHEMEVDTASSGAPAPAKHPLPELEIYCYL 123
A V+ L L P +++Y+ ED + A K P+PE++ Y +L
Sbjct: 75 ALVVVRSLAVQLYPAGPERDGIMAYI--EDYPAGAQEPELPRPRAAIKSPVPEVDAYFHL 132
Query: 124 LVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRG 183
L+L+ L+DK +A CS +A++ NRR++D++AA+ YFY+S EL DL IR
Sbjct: 133 LLLVRLLDKNDLPKATKCSQDLMAKVVGQNRRSLDLIAAKSYFYHSRVAELNNDLESIRS 192
Query: 184 NLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYL 243
L + R ATLR+D GQ L+N LLRNYLHY+LYDQA+KL +K+ E SN + R+L
Sbjct: 193 FLHSRLRTATLRNDFEGQAVLINCLLRNYLHYSLYDQADKLVNKSVFPETASNNECARFL 252
Query: 244 FYLGKIRTIQLEYTDAKESLLQAARKAP-VAALGFRVQCNKWAIIVRLLLGEIPERTVFM 302
+YLG+I+ +LEY+ A + L+QA RKAP AA+GFR K I+V LLLG+IPER VF
Sbjct: 253 YYLGRIKAAKLEYSVAHKQLVQALRKAPQQAAVGFRQTVQKLVIVVELLLGDIPERKVFR 312
Query: 303 QKGMEKALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRN 362
Q + ++L PYF+LT AVR+G+L+ F V F F D T LI+RLRHNVI+T +R+
Sbjct: 313 QAALRRSLGPYFQLTQAVRMGNLQRFGEVLVNFGEQFRQDHTFTLIIRLRHNVIKTAIRS 372
Query: 363 ISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKETGDI 422
I ++YSRIS D+A+KL LDS DAE IV+KAIRDG I+AT+D G+M SKE+ DI
Sbjct: 373 IGLAYSRISPQDIARKLGLDSPE---DAEFIVAKAIRDGVIEATLDPEKGYMRSKESTDI 429
Query: 423 YSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSH-KEKESAEKRRERQQQEQELAKHIA 481
YST EPQLAF+ RI+FCL++HN++V+A+R+PP S+ KE ESAE+RRER+QQ+ ELAK +A
Sbjct: 430 YSTREPQLAFHQRISFCLDLHNQSVKAMRYPPKSYGKELESAEERREREQQDLELAKEMA 489
Query: 482 EEDDDEF 488
EEDDD F
Sbjct: 490 EEDDDGF 496
>sp|Q9U5Z8|PSMD3_ANOST Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Anopheles stephensi GN=DOXA2 PE=3 SV=1
Length = 500
Score = 378 bits (971), Expect = e-104, Method: Compositional matrix adjust.
Identities = 231/489 (47%), Positives = 319/489 (65%), Gaps = 11/489 (2%)
Query: 4 DVEMKDKENPSNSLSSPFTPSTLHHLKEIASLMETGAHAREVRRIMRAVRLTMALRRKLK 63
DVEM+ E+ + + + +++ A ++ ++E R I+R +R RRKL
Sbjct: 19 DVEMESAED-AETAKKDAELLAVQEIRDHARQIDKAVVSKEPRFILRVLRSLPTTRRKL- 76
Query: 64 APVLSAFLNFALAP-GSEAHSRLLSYLPKEDEHEMEVDTASSGAPAPAKHPLP-ELEIYC 121
A V+ L L P G E +Y+ ED + P K P E++ Y
Sbjct: 77 ALVVVGSLAVQLYPAGPERDGNQWAYI--EDYPAGAQEPEGLHDPGSDKSPFAQEVDAYF 134
Query: 122 YLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEI 181
+LL+L+ L+DK +A CS +A++ NRR++D++AA+ YFY+S EL DL I
Sbjct: 135 HLLLLVRLLDKNDLPKATKCSQDLMAKIVGQNRRSLDLIAAKCYFYHSRVSELNNDLESI 194
Query: 182 RGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCR 241
R L + R ATLR+D GQ L+N LLRNYLHY+LYDQA+KL +K+ E SN + R
Sbjct: 195 RSFLHSRLRTATLRNDFEGQAVLINCLLRNYLHYSLYDQADKLVNKSVFPETASNNECAR 254
Query: 242 YLFYLGKIRTIQLEYTDAKESLLQAARKAP-VAALGFRVQCNKWAIIVRLLLGEIPERTV 300
+L+YLG+I+ +LEY+ A + L+QA RKAP AA+GFR K I+V LLLG+IPER V
Sbjct: 255 FLYYLGRIKAAKLEYSVAHKQLVQALRKAPQQAAVGFRQTVQKLVIVVELLLGDIPERKV 314
Query: 301 FMQKGMEKALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGL 360
F Q + ++L PYF+LT AVR+G+L+ F V E F F D T LI+RLRHNVI+T +
Sbjct: 315 FRQAALRRSLGPYFQLTQAVRMGNLQRFGEVLENFGEQFRQDHTFTLIIRLRHNVIKTAI 374
Query: 361 RNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKETG 420
R+I ++YSRIS D+A+KL LDS DAE IV+KAIRDG IDAT+D G+M +KE+
Sbjct: 375 RSIGLAYSRISPQDIARKLGLDSPE---DAEFIVAKAIRDGVIDATLDPEKGYMRTKEST 431
Query: 421 DIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSH-KEKESAEKRRERQQQEQELAKH 479
DIYST EPQLAF+ RI+FCL++HN++V+A+R+PP S+ KE ESAE+RRER+QQ+ ELAK
Sbjct: 432 DIYSTREPQLAFHQRISFCLDLHNQSVKAMRYPPKSYGKELESAEERREREQQDLELAKE 491
Query: 480 IAEEDDDEF 488
+AEEDDD+F
Sbjct: 492 MAEEDDDDF 500
>sp|Q1ZXD3|PSMD3_DICDI 26S proteasome non-ATPase regulatory subunit 3 OS=Dictyostelium
discoideum GN=psmD3 PE=1 SV=1
Length = 504
Score = 377 bits (969), Expect = e-104, Method: Compositional matrix adjust.
Identities = 202/475 (42%), Positives = 304/475 (64%), Gaps = 14/475 (2%)
Query: 25 TLHHLKEIASLMETGAHAREVRRIMRAVRLTMALRRKLKAPVLSAFLNFALAPGSEAHSR 84
T LK+ L++ G +E+R I+ +R T ++R+KL VL+ +NFA + + A +
Sbjct: 33 TFADLKKNIGLIDKGVDTKEMRFIISVLRQTQSIRKKLNYKVLNQIVNFAFSHQNHATKK 92
Query: 85 --LLSYLPKEDEHEMEVDTAS-----SGAPAPAKHPLPELEIYCYLLVLIFLIDKKRYNE 137
LLS+L K D M++D+ + + + + H E+E Y +LLVLI+LID+K+Y +
Sbjct: 93 NFLLSFL-KSDGSSMDIDSTTQAEKETTPSSSSSHLNIEVESYIHLLVLIYLIDQKKYED 151
Query: 138 AKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHD 197
A CSSA + +++ R T+ L+++++FYYSL YE+T +L E+R LL+ R ATLRH+
Sbjct: 152 ATKCSSALMETVQSNTRITLYPLSSKIFFYYSLSYEMTNNLHEVRSTLLSALRTATLRHN 211
Query: 198 ELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYT 257
+ GQ T++NLLLRNYL YNL++QA+KL + E+ S+ QF RY +Y G+IR IQLEY
Sbjct: 212 DEGQATIINLLLRNYLEYNLFEQADKLLANTQFPESASSNQFARYFYYQGRIRAIQLEYA 271
Query: 258 DAKESLLQAARKAPV-AALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFEL 316
++ + L QA RKAP A GFR K IV+LL+GEIPER F QK ++ AL+PYF L
Sbjct: 272 ESFKFLTQAIRKAPQNTAGGFRRTVYKLLSIVQLLMGEIPERNTFSQKQLKIALKPYFHL 331
Query: 317 TNAVRIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVA 376
T AVR+GDL F E+ S F SD+T L+ RLR NVI+ GL+ ++ +YSRIS D+
Sbjct: 332 TEAVRVGDLGSFNQALEQNSDIFKSDQTFTLVQRLRSNVIKAGLKKLNTAYSRISFNDIC 391
Query: 377 KKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFNSRI 436
KL+ D D I++K I+DG IDAT+++ G++ S+E D YST EP AF++RI
Sbjct: 392 TKLKFDGT--TQDIMFIIAKTIKDGVIDATINYEGGYLQSRENIDAYSTQEPLHAFSNRI 449
Query: 437 AFCLNMHNEAVRALRFPPNSHK---EKESAEKRRERQQQEQELAKHIAEEDDDEF 488
CL +HN++++A+RF P+ +K EK + + +++ E++ + E D +F
Sbjct: 450 DICLKIHNDSLKAMRFHPDLNKAETEKIAEVAKTIKEEMERQAEESSDNEGDSDF 504
>sp|O42897|RPN3_SCHPO Probable 26S proteasome regulatory subunit rpn3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpn3 PE=3 SV=2
Length = 497
Score = 353 bits (905), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 203/461 (44%), Positives = 282/461 (61%), Gaps = 18/461 (3%)
Query: 32 IASLMETGAHAREVRRIMRAVRLTMALRRKLKAPVLSAFLNFALAPGSEAHSRLLSY--L 89
IA+LM+ R+ R + R++R T + +L A VL + + + + LL +
Sbjct: 44 IAALMQ-ATKQRDPRLVYRSLRTTSNICHRLNADVLGQLIKKYYSFDNSLKNELLELIDM 102
Query: 90 PKEDEHEMEVDTASSGAPAPAKHPLPELEIYCYLLVLIFLIDKKRYNEAKACSSASIARL 149
P+ + D+++S PE+++Y LL+ + L ++Y IARL
Sbjct: 103 PQNGD-----DSSTSITNGNGNTIFPEVDMYLQLLLSMTLYYNEKYEVGAEYIKKVIARL 157
Query: 150 KNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLL 209
++ +RRT+D +AA+LYFYY L +E E R LL++HR A+LRHD Q +L LLL
Sbjct: 158 QSYDRRTLDQIAAKLYFYYILFFEKCNRSVECRNTLLSVHRTASLRHDSETQAMVLTLLL 217
Query: 210 RNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARK 269
RNY+ +NLYDQA++L SK SN RY +YLG+IR IQL+YT A E L+ A RK
Sbjct: 218 RNYIQFNLYDQADRLVSKTSFLTNASNNLAIRYQYYLGRIRAIQLDYTTAHEHLVSAIRK 277
Query: 270 AP--VAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLEL 327
AP V A+ F K I+V+LL+GEIPER +F QK +EK L PY ++ AVRIGDL
Sbjct: 278 APNTVYAVQFLEAVYKLHIVVQLLMGEIPERRIFRQKSLEKTLVPYLRISQAVRIGDLCA 337
Query: 328 FKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPV 387
F K+ + F D LI RLRH VI+TGLR IS+SYSRISL DV KL LDS
Sbjct: 338 FTDALSKYEAEFRFDGLYTLICRLRHTVIKTGLRMISLSYSRISLRDVCIKLGLDSEES- 396
Query: 388 ADAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAV 447
AE IV+K IRDG IDA++DH+N +M S E DIYST +PQ AF+ RI FCL +HN+++
Sbjct: 397 --AEYIVAKGIRDGVIDASIDHSNAFMASNEAMDIYSTEQPQQAFHERIQFCLALHNDSI 454
Query: 448 RALRFPPNSHK-EKESAEKRRERQQQEQELAKHIAEEDDDE 487
+++R+P ++HK E E E+ R R ++E+A+ A+ DDDE
Sbjct: 455 KSMRYPMDAHKSELEGVEEARRR--MDKEMAE--ADLDDDE 491
>sp|Q04908|PSMD3_CAEEL 26S proteasome non-ATPase regulatory subunit 3 OS=Caenorhabditis
elegans GN=rpn-3 PE=1 SV=1
Length = 504
Score = 301 bits (770), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 189/498 (37%), Positives = 283/498 (56%), Gaps = 20/498 (4%)
Query: 4 DVEMKDKENPSNSLSSPFTPSTLHHLKEIASLMETGAHAREVRRIMRAVRLTMALRRKLK 63
+V+ ++ P+ + + ++KE + ++ G E I R +++ R+++
Sbjct: 14 EVDEAKQDVPATEPAKDLNAIAVENIKEQLAALDKG----EEHLITRVLQVLPKTRKQIN 69
Query: 64 APVLSAFLNFALAPGSEAHSRLLSYL---PKEDEHEMEVDTASSGAPAPAK--HPL---P 115
VL ++ L+ ++ +L YL P D +DT++ +P K P+ P
Sbjct: 70 DNVLYKLVSSHLSSDAQFAEGMLKYLHYTPAADTEVQPMDTSNVKTKSPKKGVKPVFASP 129
Query: 116 ELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELT 175
E + Y LLVL+ L +K+ EA A + + N +RRT+D LAA+ ++ + YE
Sbjct: 130 ESDCYLRLLVLLHLYAQKKNTEALALGENQLTSIYNFDRRTLDGLAAKTLYFLCVIYERE 189
Query: 176 GDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHS 235
G L + +G L + R ATLR+ Q L+ LLR YL Y A L SK + S
Sbjct: 190 GRLFDHQGFLNSRLRTATLRNFSESQAVLICWLLRCYLINRQYQSAAHLVSKVAFPDNAS 249
Query: 236 NQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV-AALGFRVQCNKWAIIVRLLLGE 294
N RY++Y G+I+ +QL+Y A LQA RKAP A+GF+ KW +++ LL GE
Sbjct: 250 NNDLARYMYYQGRIKALQLDYNSAAGYFLQAQRKAPQEGAIGFKQAVQKWVVVIGLLQGE 309
Query: 295 IPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRHN 354
IP+R+VF Q K L Y +L+ VR GD+ F E+F + F +D T LIVRLR N
Sbjct: 310 IPDRSVFRQPIYRKCLAHYLDLSRGVRDGDVARFNHNLEQFKTQFEADDTLTLIVRLRQN 369
Query: 355 VIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATV--DHANG 412
VI+T ++ IS++YSRI + D+AKKL + + + E IV+KAI DGAIDA + D +G
Sbjct: 370 VIKTAIKQISLAYSRIYIKDIAKKLYITNET---ETEYIVAKAIADGAIDAVITSDVRDG 426
Query: 413 --WMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSHKEKESAEKRRERQ 470
+M S ET DIY T+EPQ F++RI +CL +HN+AV+ALR+PP E+ E+ RER+
Sbjct: 427 PRYMQSSETADIYRTSEPQAHFDTRIRYCLELHNQAVKALRYPPKKKIAVETIEQARERE 486
Query: 471 QQEQELAKHIAEEDDDEF 488
QQE E AK +A+EDDD+F
Sbjct: 487 QQELEFAKELADEDDDDF 504
>sp|P40016|RPN3_YEAST 26S proteasome regulatory subunit RPN3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN3 PE=1 SV=5
Length = 523
Score = 236 bits (602), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 139/387 (35%), Positives = 220/387 (56%), Gaps = 22/387 (5%)
Query: 116 ELEIYCYLLVLIFLIDKKRYNEAKACSSASIA--RLKNMNRRTVDVLAARLYFYYSLCYE 173
E+ + +LLV +FL D K + + + L N R+++++ A+L+FY L +E
Sbjct: 133 EINCFMHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHE 192
Query: 174 LTGDLAE----------IRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEK 223
+E +R ++ +IA+L+HD + L+NL+LR++L+ D A
Sbjct: 193 TLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASD 252
Query: 224 LRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP--VAALGFRV 279
SK P + S+ + RY FYL KI IQL+Y+ A E ++ A RKAP +LGF
Sbjct: 253 FISKLEYPHTDVSSSLE-ARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQ 311
Query: 280 QCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSVAEKFSSTF 339
Q NK ++LL+G+IPE + F Q M+K+L PY+ LT AV++GDL+ F S K+
Sbjct: 312 QSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKAVKLGDLKKFTSTITKYKQLL 371
Query: 340 SSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIR 399
D T L VRLR NVI+TG+R IS++Y +ISL D+ KL LDS V E +VS+AIR
Sbjct: 372 LKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTV---EYMVSRAIR 428
Query: 400 DGAIDATVDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSHKE 459
DG I+A ++H +G++ + E +IY + +PQ F+ RI F +H+E + ++R+P + K+
Sbjct: 429 DGVIEAKINHEDGFIETTELLNIYDSEDPQQVFDERIKFANQLHDEYLVSMRYPED--KK 486
Query: 460 KESAEKRRERQQQEQELAKHIAEEDDD 486
+ EK + + L + ++ D
Sbjct: 487 TQQNEKSENGENDDDTLDGDLMDDMSD 513
>sp|Q8SRT7|RPN3_ENCCU 26S proteasome regulatory subunit RPN3 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=RPN3 PE=1 SV=1
Length = 376
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 16/147 (10%)
Query: 309 ALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYS 368
+LR YF+L +AV+ D++ F+ E S + RL NVI+ G+R IS+ YS
Sbjct: 228 SLRIYFKLASAVKRADIKKFEETLESNKDELMSQGLYFVAKRLSQNVIQEGIRKISVVYS 287
Query: 369 RISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEP 428
RIS D+A L ++S + E +V + IR G I V A+G YS E
Sbjct: 288 RISYEDIAHILGINS----GEVEYLVKRTIRKGLIKGKV--ADGIF--------YSLRED 333
Query: 429 QLAFNSRIAF--CLNMHNEAVRALRFP 453
+ + I C+ + N +R+P
Sbjct: 334 KSKTDIGIGIRDCIQLANYIQEHMRYP 360
>sp|Q7ZTN8|CSN3_XENLA COP9 signalosome complex subunit 3 OS=Xenopus laevis GN=cops3 PE=2
SV=1
Length = 423
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 124/285 (43%), Gaps = 27/285 (9%)
Query: 167 YYSLCYELTGDLAE----IRGNLLALHRIATLR---------HDELGQETLLNLLLRNYL 213
+ LC++LT L E +RG + I ++ H +L Q +LL + L
Sbjct: 100 FAGLCHQLTNALVERKQPLRGICVIRQAIDKMQMNANQLTSIHGDLCQLSLLAKCFKPAL 159
Query: 214 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273
Y D + + A+ + F Y +Y G I T + A QA +A
Sbjct: 160 AYLDVDMMDICKENG----AYDAKPFLCYYYYGGMIYTGLKNFERAMYFYEQAITTPAMA 215
Query: 274 ALGFRVQCNKWAIIVRLLL-GEIPERTVFMQKGMEKALRP----YFELTNAVRIGDLELF 328
++ K I+V L+L G++ + + + + + ++P Y EL +
Sbjct: 216 VSHIMLEAYKKYILVSLILHGKVQQLPKYTSQVVGRFIKPLSNAYHELAQVYSTNNPAEL 275
Query: 329 KSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVA 388
+++ K + TF+ D L+ + ++ + ++ ++ ++ +SL D+A +++L A
Sbjct: 276 RNLVSKHNETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGAQ--- 332
Query: 389 DAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFN 433
+AE V I DG I A+++ +G + ++ + Y N P + N
Sbjct: 333 EAEKYVLYMIEDGEIFASINQKDGMVCFHDSPEKY--NNPAMLHN 375
>sp|Q8SYG2|CSN3_DROME COP9 signalosome complex subunit 3 OS=Drosophila melanogaster
GN=CSN3 PE=2 SV=2
Length = 445
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 93/200 (46%), Gaps = 11/200 (5%)
Query: 239 FCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALG-FRVQCNKWAIIVRLL----LG 293
F Y +Y G I T Y A + P A+ ++ K ++V L+ +
Sbjct: 198 FLLYFYYGGMIYTAVKNYERAL-YFFEVCITTPAMAMSHIMLEAYKKFLMVSLIVEGKIA 256
Query: 294 EIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRH 353
IP+ T + + M+ Y +L N E + + K+S F+ D L ++
Sbjct: 257 YIPKNTQVIGRFMKPMANHYHDLVNVYANSSSEELRIIILKYSEAFTRDNNMGLAKQVAT 316
Query: 354 NVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGW 413
++ + ++ ++ ++ +SL+DVA +++L SA +AE + I+ G I A+++ +G
Sbjct: 317 SLYKRNIQRLTKTFLTLSLSDVASRVQLASA---VEAERYILNMIKSGEIYASINQKDGM 373
Query: 414 MVSKETGDIYSTNEPQLAFN 433
++ K+ + Y N P++ N
Sbjct: 374 VLFKDDPEKY--NSPEMFLN 391
>sp|Q28IV6|CSN3_XENTR COP9 signalosome complex subunit 3 OS=Xenopus tropicalis GN=cops3
PE=2 SV=1
Length = 423
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 123/285 (43%), Gaps = 27/285 (9%)
Query: 167 YYSLCYELTGDLAE----IRGNLLALHRIATLR---------HDELGQETLLNLLLRNYL 213
+ LC++LT L E +RG + I ++ H +L Q +LL + L
Sbjct: 100 FAGLCHQLTNALVERKQPLRGICVLRQAIDKMQMNANQLTSIHADLCQLSLLAKCFKPAL 159
Query: 214 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273
Y D + + A+ + F Y +Y G I T + A QA +A
Sbjct: 160 AYLDVDMMDICKENG----AYDAKPFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMA 215
Query: 274 ALGFRVQCNKWAIIVRLLL-GEIPERTVFMQKGMEKALRP----YFELTNAVRIGDLELF 328
++ K I+V L+L G++ + + + + + ++P Y EL +
Sbjct: 216 VSHIMLEAYKKYILVSLILHGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPAEL 275
Query: 329 KSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVA 388
+++ K + TF+ D L+ + ++ + ++ ++ ++ +SL D+A +++L A
Sbjct: 276 RNLVSKHNETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGAQ--- 332
Query: 389 DAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFN 433
+AE V I DG I A+++ +G + + + Y N P + N
Sbjct: 333 EAEKYVLYMIEDGEIFASINQKDGMVCFHDNPEKY--NNPAMLHN 375
>sp|Q5ZJF1|CSN3_CHICK COP9 signalosome complex subunit 3 OS=Gallus gallus GN=COPS3 PE=2
SV=1
Length = 423
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 120/285 (42%), Gaps = 27/285 (9%)
Query: 167 YYSLCYELTGDLAE----IRGNLLALHRIATLR---------HDELGQETLLNLLLRNYL 213
+ LC++LT L E +RG + I ++ H +L Q LL + L
Sbjct: 100 FAGLCHQLTNALVERKQPLRGISILRQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPAL 159
Query: 214 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273
Y D + + A+ + F Y +Y G I T + A QA +A
Sbjct: 160 PYLDVDMMDICKENG----AYDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMA 215
Query: 274 ALGFRVQCNKWAIIVRL-LLGEIPERTVFMQKGMEKALRP----YFELTNAVRIGDLELF 328
++ K I+V L LLG++ + + + + + ++P Y EL
Sbjct: 216 VSHIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNKPSEL 275
Query: 329 KSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVA 388
+++ K S TF+ D L+ + ++ + ++ ++ ++ +SL D+A +++L
Sbjct: 276 RNLVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQ--- 332
Query: 389 DAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFN 433
+AE V I DG I A+++ +G + + + Y N P + N
Sbjct: 333 EAEKYVLHMIEDGEIFASINQKDGMVCFHDNPEKY--NNPAMLHN 375
>sp|Q5RFS2|CSN3_PONAB COP9 signalosome complex subunit 3 OS=Pongo abelii GN=COPS3 PE=2
SV=1
Length = 423
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 121/285 (42%), Gaps = 27/285 (9%)
Query: 167 YYSLCYELTGDLAE----IRGNLLALHRIATLR---------HDELGQETLLNLLLRNYL 213
+ LC++LT L E +RG + I ++ H +L Q LL + L
Sbjct: 100 FAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPAL 159
Query: 214 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273
Y D + + A+ + F Y +Y G I T + A QA +A
Sbjct: 160 PYLDVDMMDICKENG----AYDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMA 215
Query: 274 ALGFRVQCNKWAIIVRL-LLGEIPERTVFMQKGMEKALRP----YFELTNAVRIGDLELF 328
++ K I+V L LLG++ + + + + + ++P Y EL +
Sbjct: 216 VSHIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSEL 275
Query: 329 KSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVA 388
+++ K S TF+ D L+ + ++ + ++ ++ ++ +SL D+A +++L
Sbjct: 276 RNLVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQ--- 332
Query: 389 DAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFN 433
+AE V I DG I A+++ +G + + + Y N P + N
Sbjct: 333 EAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKY--NNPAMLHN 375
>sp|Q4R898|CSN3_MACFA COP9 signalosome complex subunit 3 OS=Macaca fascicularis GN=COPS3
PE=2 SV=1
Length = 423
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 121/285 (42%), Gaps = 27/285 (9%)
Query: 167 YYSLCYELTGDLAE----IRGNLLALHRIATLR---------HDELGQETLLNLLLRNYL 213
+ LC++LT L E +RG + I ++ H +L Q LL + L
Sbjct: 100 FAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPAL 159
Query: 214 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273
Y D + + A+ + F Y +Y G I T + A QA +A
Sbjct: 160 PYLDVDMMDICKENG----AYDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMA 215
Query: 274 ALGFRVQCNKWAIIVRL-LLGEIPERTVFMQKGMEKALRP----YFELTNAVRIGDLELF 328
++ K I+V L LLG++ + + + + + ++P Y EL +
Sbjct: 216 VSHIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSEL 275
Query: 329 KSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVA 388
+++ K S TF+ D L+ + ++ + ++ ++ ++ +SL D+A +++L
Sbjct: 276 RNLVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQ--- 332
Query: 389 DAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFN 433
+AE V I DG I A+++ +G + + + Y N P + N
Sbjct: 333 EAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKY--NNPAMLHN 375
>sp|Q9UNS2|CSN3_HUMAN COP9 signalosome complex subunit 3 OS=Homo sapiens GN=COPS3 PE=1
SV=3
Length = 423
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 121/285 (42%), Gaps = 27/285 (9%)
Query: 167 YYSLCYELTGDLAE----IRGNLLALHRIATLR---------HDELGQETLLNLLLRNYL 213
+ LC++LT L E +RG + I ++ H +L Q LL + L
Sbjct: 100 FAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPAL 159
Query: 214 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273
Y D + + A+ + F Y +Y G I T + A QA +A
Sbjct: 160 PYLDVDMMDICKENG----AYDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMA 215
Query: 274 ALGFRVQCNKWAIIVRL-LLGEIPERTVFMQKGMEKALRP----YFELTNAVRIGDLELF 328
++ K I+V L LLG++ + + + + + ++P Y EL +
Sbjct: 216 VSHIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSEL 275
Query: 329 KSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVA 388
+++ K S TF+ D L+ + ++ + ++ ++ ++ +SL D+A +++L
Sbjct: 276 RNLVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQ--- 332
Query: 389 DAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFN 433
+AE V I DG I A+++ +G + + + Y N P + N
Sbjct: 333 EAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKY--NNPAMLHN 375
>sp|O88543|CSN3_MOUSE COP9 signalosome complex subunit 3 OS=Mus musculus GN=Cops3 PE=1
SV=3
Length = 423
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 121/285 (42%), Gaps = 27/285 (9%)
Query: 167 YYSLCYELTGDLAE----IRGNLLALHRIATLR---------HDELGQETLLNLLLRNYL 213
+ LC++LT L E +RG + I ++ H +L Q LL + L
Sbjct: 100 FAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPAL 159
Query: 214 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273
Y D + + A+ + F Y +Y G I T + A QA +A
Sbjct: 160 PYLDVDMMDICKENG----AYDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMA 215
Query: 274 ALGFRVQCNKWAIIVRL-LLGEIPERTVFMQKGMEKALRP----YFELTNAVRIGDLELF 328
++ K I+V L LLG++ + + + + + ++P Y EL +
Sbjct: 216 VSHIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSEL 275
Query: 329 KSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVA 388
+++ K S TF+ D L+ + ++ + ++ ++ ++ +SL D+A +++L
Sbjct: 276 RNLVSKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQ--- 332
Query: 389 DAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFN 433
+AE V I DG I A+++ +G + + + Y N P + N
Sbjct: 333 EAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKY--NNPAMLHN 375
>sp|Q68FW9|CSN3_RAT COP9 signalosome complex subunit 3 OS=Rattus norvegicus GN=Cops3
PE=2 SV=1
Length = 423
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 121/285 (42%), Gaps = 27/285 (9%)
Query: 167 YYSLCYELTGDLAE----IRGNLLALHRIATLR---------HDELGQETLLNLLLRNYL 213
+ LC++LT L E +RG + I ++ H +L Q LL + L
Sbjct: 100 FAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPAL 159
Query: 214 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273
Y D + + A+ + F Y +Y G I T + A QA +A
Sbjct: 160 PYLDVDMMDICKENG----AYDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMA 215
Query: 274 ALGFRVQCNKWAIIVRL-LLGEIPERTVFMQKGMEKALRP----YFELTNAVRIGDLELF 328
++ K I+V L LLG++ + + + + + ++P Y EL +
Sbjct: 216 VSHIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSEL 275
Query: 329 KSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVA 388
+++ K S TF+ D L+ + ++ + ++ ++ ++ +SL D+A +++L
Sbjct: 276 RNLVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQ--- 332
Query: 389 DAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFN 433
+AE V I DG I A+++ +G + + + Y N P + N
Sbjct: 333 EAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKY--NNPAMLHN 375
>sp|A6H7B5|CSN3_BOVIN COP9 signalosome complex subunit 3 OS=Bos taurus GN=COPS3 PE=2 SV=1
Length = 423
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 120/285 (42%), Gaps = 27/285 (9%)
Query: 167 YYSLCYELTGDLAE----IRGNLLALHRIATLR---------HDELGQETLLNLLLRNYL 213
+ LC++LT L E +RG + I ++ H +L Q LL + L
Sbjct: 100 FAGLCHQLTNALVERKQPLRGIGVLRQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPAL 159
Query: 214 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273
Y D + + A+ + F Y +Y G + T + A QA +A
Sbjct: 160 PYLDVDMVDICKENG----AYDAKHFLCYYYYGGMVYTGLKNFERALYFYEQAITTPAMA 215
Query: 274 ALGFRVQCNKWAIIVRL-LLGEIPERTVFMQKGMEKALRP----YFELTNAVRIGDLELF 328
++ K I+V L LLG++ + + + + + ++P Y EL +
Sbjct: 216 VSHIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSEL 275
Query: 329 KSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVA 388
+S+ K S F+ D L+ + ++ + ++ ++ ++ +SL D+A +++L
Sbjct: 276 RSLVTKHSEIFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQ--- 332
Query: 389 DAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFN 433
+AE V I DG I A+++ +G + + + Y N P + N
Sbjct: 333 EAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKY--NNPAMLHN 375
>sp|Q6P2U9|CSN3_DANRE COP9 signalosome complex subunit 3 OS=Danio rerio GN=cops3 PE=2
SV=1
Length = 423
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/282 (20%), Positives = 120/282 (42%), Gaps = 27/282 (9%)
Query: 167 YYSLCYELTGDLAE----IRGNLLALHRIATLR---------HDELGQETLLNLLLRNYL 213
+ LC++LT L E +RG + I ++ H +L Q LL + +
Sbjct: 100 FAGLCHQLTNALVERKQPLRGISILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPAV 159
Query: 214 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273
+ D + + A+ + F Y +Y G I T + A QA +A
Sbjct: 160 PFLELDMMDICKENG----AYDAKHFLCYYYYGGMIYTGLKNFERALYFFEQAITTPAMA 215
Query: 274 ALGFRVQCNKWAIIVRLLL-GEIPERTVFMQKGMEKALRP----YFELTNAVRIGDLELF 328
++ K I+V L+L G++ + + + + + ++P Y EL +
Sbjct: 216 VSHIMLEAYKKYILVSLILHGKVQQLPKYTSQIVGRFIKPLSNAYHELAQIYATNNPAEL 275
Query: 329 KSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVA 388
+++ K S TF+ D L+ + ++ + ++ ++ ++ +SL D+A +++L
Sbjct: 276 RALVNKHSETFTRDNNTGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQ--- 332
Query: 389 DAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQL 430
+AE V I DG I A+++ +G + + + Y N P +
Sbjct: 333 EAEKYVLHMIEDGEIYASINQKDGMVCFHDNPEKY--NNPAM 372
>sp|Q54PX7|PCID2_DICDI PCI domain-containing protein 2 homolog OS=Dictyostelium discoideum
GN=pcid2 PE=3 SV=1
Length = 430
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 89/194 (45%), Gaps = 12/194 (6%)
Query: 229 PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIV 288
P E++ Q Y F+ G++ +Y A+E LL A K P ++ NK I++
Sbjct: 232 PTLESYPLNQVITYRFFNGRLSVFNGQYKKAQEELLYAFNKCPNDSIK-----NKRLILL 286
Query: 289 RLLLGEIPERTVFMQKG-MEK-ALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTNN 346
L+ ++ E+ F +K +EK L + ++ +++ G+++ F + F S
Sbjct: 287 FLVPMQL-EQCKFPKKSLLEKFKLTQFIDIVQSIKSGNIKQFNECLSTHQNFFISKGIYL 345
Query: 347 LIVRLRHNVIRTGLRNISI--SYSRISLADVAKKLRL--DSANPVADAESIVSKAIRDGA 402
++ +L+ V R + + + + RI + + L+ + A + + E I+S I +G
Sbjct: 346 ILEKLKIIVYRNLFKKVHLITTGQRIPIGNFVSALKWMENDAIDIDETECILSNLIYNGY 405
Query: 403 IDATVDHANGWMVS 416
+ + H +VS
Sbjct: 406 LKGYISHKVALVVS 419
>sp|Q8W575|CSN3_ARATH COP9 signalosome complex subunit 3 OS=Arabidopsis thaliana GN=CSN3
PE=1 SV=2
Length = 429
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Query: 303 QKGMEKALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRN 362
Q+ + PY EL N G + +++ ++ F D+ L+ + ++ + +
Sbjct: 250 QRSFKNYTGPYIELGNCYNDGKIGELEALVVARNAEFEEDKNLGLVKQAVSSLYKRNILR 309
Query: 363 ISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKETGDI 422
++ Y +SL D+A ++L +A +AE V + I+DG I A ++ +G + E +
Sbjct: 310 LTQKYLTLSLQDIANMVQLGNAK---EAEMHVLQMIQDGQIHALINQKDGMVRFLEDPEQ 366
Query: 423 YSTNE 427
Y ++E
Sbjct: 367 YKSSE 371
>sp|Q9VTL1|PCID2_DROME PCI domain-containing protein 2 homolog OS=Drosophila melanogaster
GN=PCID2 PE=1 SV=2
Length = 395
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 90/240 (37%), Gaps = 34/240 (14%)
Query: 199 LGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQF---------CRYLFYLGKI 249
LG L+N L + Y N KL P A N F Y +++G+
Sbjct: 164 LGMMNLVNQLFKIYFRIN------KLHLCKPLIRAIDNCIFKDSFPLPEQITYKYFVGRR 217
Query: 250 RTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAII-----VRLLLGEIPERTVFMQK 304
Y A + L A P R NK I+ V++LLG +P +++ +
Sbjct: 218 AMFDSNYQAAVQYLSYAFSNCPD-----RFASNKRLILIYLVPVKMLLGYLPSKSLLQRY 272
Query: 305 GMEKALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNIS 364
L + +L A++ G++ F + L+ +L+ V R + +
Sbjct: 273 D----LLLFLDLAMAMKAGNVNRFDEIVRDQELVLIRSGIYLLVEKLKFLVYRNLFKKVF 328
Query: 365 I--SYSRISLADVAKKLRLDSANPVA--DAESIVSKAIRDGAIDATVDHA-NGWMVSKET 419
+ ++ + D L V+ + IV+ I DG I + HA N +VSK+
Sbjct: 329 VIRKSHQLDMGDFLSALHFVGLTDVSLDETHCIVANLIYDGKIKGYISHAHNKLVVSKQN 388
>sp|A4TEN6|CH602_MYCGI 60 kDa chaperonin 2 OS=Mycobacterium gilvum (strain PYR-GCK)
GN=groL2 PE=3 SV=1
Length = 541
Score = 37.0 bits (84), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 326 ELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISL-------ADVAKK 378
+L KSVA K ++ + D T V L +++ GLRN++ + I+L AD +
Sbjct: 71 QLVKSVATK-TNDVAGDGTTTATV-LAQALVKAGLRNVAAGANPIALGAGIAKAADAVSE 128
Query: 379 LRLDSANPVADAESI 393
L SA PV DA+SI
Sbjct: 129 ALLASATPVKDAKSI 143
>sp|Q6IQT4|CSN2_DANRE COP9 signalosome complex subunit 2 OS=Danio rerio GN=cops2 PE=2
SV=1
Length = 443
Score = 35.8 bits (81), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 28/179 (15%)
Query: 247 GKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGM 306
GK+ + E+ A +A + + R C K+ ++ +L M+ G+
Sbjct: 242 GKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANML----------MKSGI 291
Query: 307 E----KALRPY---------FELTNAVRIGDLELFKSVAEKFSSTFSSDR-TNNLIVRLR 352
+ +PY L +A + D+ F+ + + S D I L
Sbjct: 292 NPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELL 351
Query: 353 HNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN 411
N+ L + Y+RI + ++K+L +D VAD ES++ + I D I+ +D N
Sbjct: 352 RNIRTQVLIKLIKPYTRIHIPFISKELNID----VADVESLLVQCILDNTINGRIDQVN 406
>sp|Q7SI58|CSN2_NEUCR COP9 signalosome complex subunit 2 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-2 PE=1 SV=1
Length = 490
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 24/205 (11%)
Query: 217 LYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALG 276
LY +A K+RS P + + C GK+ + + +A+ +A R A
Sbjct: 220 LYQKALKVRSAVPHPKIQGVIRECG-----GKMHMSEENWKEAQSDFFEAFRNYDEAGDL 274
Query: 277 FRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPY---------FELTNAVRIGDLEL 327
R+Q K+ ++ +L+ + F + M +PY EL +A + D+
Sbjct: 275 RRIQVLKYLLLTTMLMK--SDINPFDSQEM----KPYRNDPRIFAMTELVDAYQRDDIYR 328
Query: 328 FKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPV 387
++ V +K + + I + N+ G+ + Y+R+ ++ +A++LR+ + V
Sbjct: 329 YEDVLQKNTDLLADPFIAENIDEVTRNMRTKGVVKLIAPYTRMRISWLAERLRI-TEPEV 387
Query: 388 ADAESIVSKAIRDGAIDATVDHANG 412
D I+S I DG + +D G
Sbjct: 388 MD---ILSFLIVDGRVKGRIDEHKG 409
>sp|Q6IR75|CSN2_XENLA COP9 signalosome complex subunit 2 (Fragment) OS=Xenopus laevis
GN=csn2 PE=2 SV=1
Length = 441
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 28/179 (15%)
Query: 247 GKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGM 306
GK+ + E+ A +A + + R C K+ ++ +L M+ G+
Sbjct: 240 GKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANML----------MKSGI 289
Query: 307 E----KALRPY---------FELTNAVRIGDLELFKSVAEKFSSTFSSDR-TNNLIVRLR 352
+ +PY L +A + D+ F+ + + S D I L
Sbjct: 290 NPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELL 349
Query: 353 HNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN 411
N+ L + Y+RI + ++K+L +D VAD ES++ + I D I +D N
Sbjct: 350 RNIRTQVLIKLIKPYTRIHIPFISKELNID----VADVESLLVQCILDNTIHGRIDQVN 404
>sp|P61203|CSN2_RAT COP9 signalosome complex subunit 2 OS=Rattus norvegicus GN=Cops2
PE=2 SV=1
Length = 443
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 28/179 (15%)
Query: 247 GKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGM 306
GK+ + E+ A +A + + R C K+ ++ +L M+ G+
Sbjct: 242 GKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANML----------MKSGI 291
Query: 307 E----KALRPY---------FELTNAVRIGDLELFKSVAEKFSSTFSSDR-TNNLIVRLR 352
+ +PY L +A + D+ F+ + + S D I L
Sbjct: 292 NPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELL 351
Query: 353 HNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN 411
N+ L + Y+RI + ++K+L +D VAD ES++ + I D I +D N
Sbjct: 352 RNIRTQVLIKLIKPYTRIHIPFISKELNID----VADVESLLVQCILDNTIHGRIDQVN 406
>sp|P61202|CSN2_MOUSE COP9 signalosome complex subunit 2 OS=Mus musculus GN=Cops2 PE=1
SV=1
Length = 443
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 28/179 (15%)
Query: 247 GKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGM 306
GK+ + E+ A +A + + R C K+ ++ +L M+ G+
Sbjct: 242 GKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANML----------MKSGI 291
Query: 307 E----KALRPY---------FELTNAVRIGDLELFKSVAEKFSSTFSSDR-TNNLIVRLR 352
+ +PY L +A + D+ F+ + + S D I L
Sbjct: 292 NPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELL 351
Query: 353 HNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN 411
N+ L + Y+RI + ++K+L +D VAD ES++ + I D I +D N
Sbjct: 352 RNIRTQVLIKLIKPYTRIHIPFISKELNID----VADVESLLVQCILDNTIHGRIDQVN 406
>sp|P61201|CSN2_HUMAN COP9 signalosome complex subunit 2 OS=Homo sapiens GN=COPS2 PE=1
SV=1
Length = 443
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 28/179 (15%)
Query: 247 GKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGM 306
GK+ + E+ A +A + + R C K+ ++ +L M+ G+
Sbjct: 242 GKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANML----------MKSGI 291
Query: 307 E----KALRPY---------FELTNAVRIGDLELFKSVAEKFSSTFSSDR-TNNLIVRLR 352
+ +PY L +A + D+ F+ + + S D I L
Sbjct: 292 NPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELL 351
Query: 353 HNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN 411
N+ L + Y+RI + ++K+L +D VAD ES++ + I D I +D N
Sbjct: 352 RNIRTQVLIKLIKPYTRIHIPFISKELNID----VADVESLLVQCILDNTIHGRIDQVN 406
>sp|A0QSS4|CH602_MYCS2 60 kDa chaperonin 2 OS=Mycobacterium smegmatis (strain ATCC 700084
/ mc(2)155) GN=groL2 PE=1 SV=1
Length = 540
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 326 ELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISL-------ADVAKK 378
+L KSVA K ++ + D T V L ++R GLRN++ + I+L AD +
Sbjct: 71 QLVKSVATK-TNDVAGDGTTTATV-LAQALVRAGLRNVAAGANPIALGSGISKAADAVSE 128
Query: 379 LRLDSANPVADAESI 393
L SA PV D ++I
Sbjct: 129 ALLASATPVDDKKAI 143
>sp|Q54UB5|PSD11_DICDI 26S proteasome non-ATPase regulatory subunit 11 OS=Dictyostelium
discoideum GN=psmD11 PE=2 SV=1
Length = 413
Score = 34.3 bits (77), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 325 LELFKSVAEKFSSTFSSDRT-NNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDS 383
L +F+ V ++FS S D ++ + L N++ L I +SR+ ++ +AK + L
Sbjct: 290 LHMFQEVTKEFSDQLSDDPIIHSHLTELYSNLLEQNLCRIIEPFSRVEISHIAKLIDL-- 347
Query: 384 ANPVADAESIVSKAIRDGAIDATVDHANGWMV 415
PV E +S I D + +D G ++
Sbjct: 348 --PVDVVERKLSLMILDKKYNGILDQGTGTLI 377
>sp|Q54HL6|CSN2_DICDI COP9 signalosome complex subunit 2 OS=Dictyostelium discoideum
GN=csn2 PE=1 SV=1
Length = 449
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 87/210 (41%), Gaps = 33/210 (15%)
Query: 216 NLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAAL 275
+LY +A +++S P + C GK+ + E+ A +A + A
Sbjct: 220 DLYKKALEIKSAIPHPRIMGIIRECG-----GKMHMAEKEWEKAHTDFFEAFKNYDEAGN 274
Query: 276 GFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPY------FELTNAVRI---GDLE 326
R+QC K+ ++ +L+ T+ E +PY +TN V D+
Sbjct: 275 SRRIQCLKYLVLACMLMLS----TINPFDSTEA--KPYKNDPDILAMTNLVMAYEKNDIY 328
Query: 327 LFKSVAEKFSSTFSSD-----RTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRL 381
F+ + + T D +L+ +R V+ L+ Y+RI ++ ++K+L +
Sbjct: 329 AFEKILKDNRKTIMDDPFIRMYIEDLLRNIRTQVLLKLLK----PYTRIRISFISKELNI 384
Query: 382 DSANPVADAESIVSKAIRDGAIDATVDHAN 411
P +D ES++ I D I ++D N
Sbjct: 385 ----PSSDVESLLVSLILDNKIRGSIDQVN 410
>sp|A6SM77|EIF3E_BOTFB Eukaryotic translation initiation factor 3 subunit E OS=Botryotinia
fuckeliana (strain B05.10) GN=int6 PE=3 SV=1
Length = 452
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 328 FKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISY----SRISLADVAKKLRLDS 383
F+ +K S R++ +V N + IS SY RI + D++ +L L+
Sbjct: 333 FEEAQKKLSEAEEVLRSDFFLVAASENFVEAARHLISESYCKIHQRIDIKDLSARLGLNQ 392
Query: 384 ANPVADAESIVSKAIRDGAIDATVDHANGWMV 415
D E + IRD +DA +D+ G +V
Sbjct: 393 D----DGEKWIVNLIRDTRVDAKIDYKEGTVV 420
>sp|Q05972|CH601_SYNY3 60 kDa chaperonin 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=groL1 PE=1 SV=4
Length = 541
Score = 33.9 bits (76), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 314 FELTNAVRIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLA 373
EL + V + L + A K ++ + D T V L H +++ GLRN++ + ISL
Sbjct: 59 IELEDHVENTGVSLIRQAASK-TNDVAGDGTTTATV-LAHAIVKEGLRNVAAGANPISLK 116
Query: 374 ---DVAKKLRL----DSANPVADAESIVSKAIRDGAIDATVDHANGWMVS 416
D A + + A PV D+++I + GAI A D G M++
Sbjct: 117 RGIDKATDFLVARIKEHAQPVGDSKAIA----QVGAISAGNDEEVGQMIA 162
>sp|Q7S519|EIF3E_NEUCR Eukaryotic translation initiation factor 3 subunit E OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=int-6 PE=3 SV=1
Length = 443
Score = 33.5 bits (75), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 367 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMV 415
++RISL D++ +L L++ DAE + IRD +DA +D+ G +V
Sbjct: 367 HARISLKDLSARLGLNND----DAEKWIVNLIRDTRLDAKIDYKEGTVV 411
>sp|Q8W207|CSN2_ARATH COP9 signalosome complex subunit 2 OS=Arabidopsis thaliana GN=CSN2
PE=1 SV=1
Length = 439
Score = 33.1 bits (74), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 82/189 (43%), Gaps = 28/189 (14%)
Query: 247 GKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGM 306
GK+ + ++ +A +A + A R+QC K+ ++ +L+ E V G
Sbjct: 238 GKMHMAERQWEEAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLM----ESEVNPFDGQ 293
Query: 307 EKALRPY------FELTN---AVRIGDLELFKSVAEKFSSTFSSD-----RTNNLIVRLR 352
E +PY +TN A + ++ F+ + + T D +L+ ++R
Sbjct: 294 EA--KPYKNDPEILAMTNLIAAYQRNEIIEFERILKSNRRTIMDDPFIRNYMEDLLKKVR 351
Query: 353 HNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANG 412
V+ ++ Y++I + ++K+L + P D ++ I D ID +D N
Sbjct: 352 TQVLLKLIK----PYTKIGIPFISKELNV----PETDVTELLVSLILDSRIDGHIDEMNR 403
Query: 413 WMVSKETGD 421
+++ ++G+
Sbjct: 404 YLLRGDSGN 412
>sp|A5GNA9|CH602_SYNPW 60 kDa chaperonin 2 OS=Synechococcus sp. (strain WH7803) GN=groL2
PE=3 SV=1
Length = 544
Score = 32.7 bits (73), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 314 FELTNAVRIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLA 373
EL + + + L + A K ++ + D T V L H +++ GLRN++ + I+L
Sbjct: 59 IELEDHIENTGVALIRQAASK-TNDAAGDGTTTATV-LAHAMVKAGLRNVAAGANAITLK 116
Query: 374 ---DVAKKLRL----DSANPVADAESIVSKAIRDGAIDATVDHANGWMVS 416
D A + D ANP++D+ +I + G I A D G M++
Sbjct: 117 KGIDKASDFLVAEIKDKANPISDSNAIA----QVGTISAGNDEEVGRMIA 162
>sp|Q1BCW7|CH602_MYCSS 60 kDa chaperonin 2 OS=Mycobacterium sp. (strain MCS) GN=groL2 PE=3
SV=1
Length = 540
Score = 32.7 bits (73), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 326 ELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISL-------ADVAKK 378
+L KSVA K ++ + D T V L ++R GLRN++ + I+L AD +
Sbjct: 71 QLVKSVATK-TNDVAGDGTTTATV-LAQALVRAGLRNVAAGANPIALGAGISKAADAVSE 128
Query: 379 LRLDSANPVADAESI 393
L +A PV D I
Sbjct: 129 ALLAAATPVDDKSGI 143
>sp|A1UC26|CH602_MYCSK 60 kDa chaperonin 2 OS=Mycobacterium sp. (strain KMS) GN=groL2 PE=3
SV=1
Length = 540
Score = 32.7 bits (73), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 326 ELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISL-------ADVAKK 378
+L KSVA K ++ + D T V L ++R GLRN++ + I+L AD +
Sbjct: 71 QLVKSVATK-TNDVAGDGTTTATV-LAQALVRAGLRNVAAGANPIALGAGISKAADAVSE 128
Query: 379 LRLDSANPVADAESI 393
L +A PV D I
Sbjct: 129 ALLAAATPVDDKSGI 143
>sp|A3PVQ7|CH602_MYCSJ 60 kDa chaperonin 2 OS=Mycobacterium sp. (strain JLS) GN=groL2 PE=3
SV=1
Length = 540
Score = 32.7 bits (73), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 326 ELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISL-------ADVAKK 378
+L KSVA K ++ + D T V L ++R GLRN++ + I+L AD +
Sbjct: 71 QLVKSVATK-TNDVAGDGTTTATV-LAQALVRAGLRNVAAGANPIALGAGISKAADAVSE 128
Query: 379 LRLDSANPVADAESI 393
L +A PV D I
Sbjct: 129 ALLAAATPVDDKSGI 143
>sp|Q95QU0|PCID2_CAEEL PCI domain-containing protein 2 homolog OS=Caenorhabditis elegans
GN=C27F2.10 PE=3 SV=1
Length = 413
Score = 32.7 bits (73), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 72/178 (40%), Gaps = 8/178 (4%)
Query: 242 YLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPERTVF 301
Y ++LG+ + A++SLL A R P ++ + + + I V++ LG +P +
Sbjct: 224 YNYFLGRKAMFDADLNLAEKSLLYAFRNCPADSMSNKRKILIYLIPVKMFLGHMPTSQLL 283
Query: 302 MQKGMEKALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLR 361
E L + ++ V+ G+L + F ++ +LR RT +
Sbjct: 284 ----HEYRLDEFQDVVAGVKDGNLAQLDGALAANEAFFIKCGIFLMLEKLRMITFRTLFK 339
Query: 362 NIS--ISYSRISLADVAKKLRLDSANPV--ADAESIVSKAIRDGAIDATVDHANGWMV 415
+S + ++I L LR V + E I++ I I + H + +V
Sbjct: 340 KVSQIVGTAQIPLDAFQTALRFVGVTDVDMDELECIIANLIASKKIKGYLSHQHQKLV 397
>sp|Q9FE46|GSTFC_ARATH Glutathione S-transferase F12 OS=Arabidopsis thaliana GN=GSTF12
PE=1 SV=1
Length = 214
Score = 32.3 bits (72), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 301 FMQKGMEKALRPYFELTNAVRIGDLELFKS--VAEKFSSTFSSDRTNNLIVRLRHNVIRT 358
F QK E LR F A+ GD +LF+S +A +++ F+ TN L L H I
Sbjct: 38 FEQKKPEHLLRQPFGQVPAIEDGDFKLFESRAIARYYATKFADQGTNLLGKSLEHRAIVD 97
Query: 359 GLRNISISYSRI 370
++ Y +
Sbjct: 98 QWADVETYYFNV 109
>sp|Q68F70|INT4_XENLA Integrator complex subunit 4 OS=Xenopus laevis GN=ints4 PE=2 SV=1
Length = 969
Score = 32.3 bits (72), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 62/123 (50%), Gaps = 7/123 (5%)
Query: 330 SVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVAD 389
S+ + +T +++++ ++ +L ++ GL+ + I R+ L DVA K D+++ V +
Sbjct: 111 SIVDDVINTLQNEKSHQVLAQLLDTLLEIGLKLLDIVSHRMRLVDVACKHLSDTSHGVRN 170
Query: 390 AESIVSKAIRDGAIDAT----VDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNE 445
+ + G+++A+ V++A V K GD + +P++ + I L +H
Sbjct: 171 KCLQLLGCL--GSVEASPAKEVENAVAKDVQKIIGDYFIDQDPRVR-TAAIKAMLQLHER 227
Query: 446 AVR 448
++
Sbjct: 228 GLK 230
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165,608,101
Number of Sequences: 539616
Number of extensions: 6526648
Number of successful extensions: 29573
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 29473
Number of HSP's gapped (non-prelim): 82
length of query: 488
length of database: 191,569,459
effective HSP length: 121
effective length of query: 367
effective length of database: 126,275,923
effective search space: 46343263741
effective search space used: 46343263741
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)