Query 011352
Match_columns 488
No_of_seqs 280 out of 828
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 06:21:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011352.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011352hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_S RPN3, 26S proteasome re 100.0 2E-106 8E-111 857.1 18.8 458 22-482 27-513 (523)
2 3t5v_B Nuclear mRNA export pro 100.0 4.6E-47 1.6E-51 401.0 23.4 329 112-444 57-451 (455)
3 3t5x_A PCI domain-containing p 100.0 4.6E-44 1.6E-48 341.7 17.5 194 229-433 3-200 (203)
4 4b4t_P 26S proteasome regulato 99.9 3E-26 1E-30 242.7 23.2 280 157-444 132-427 (445)
5 3txn_A 26S proteasome regulato 99.9 3.6E-25 1.2E-29 230.3 27.7 248 128-419 108-362 (394)
6 4b4t_Q 26S proteasome regulato 99.9 1.1E-20 3.8E-25 193.3 24.1 283 131-420 107-403 (434)
7 4b4t_R RPN7, 26S proteasome re 99.7 8.2E-16 2.8E-20 161.8 22.7 240 174-420 143-394 (429)
8 4b4t_O 26S proteasome regulato 99.7 2.8E-16 9.4E-21 163.8 14.8 240 199-444 124-382 (393)
9 4b0z_A RPN12, 26S proteasome r 99.5 2.9E-13 1E-17 131.0 14.9 182 208-396 13-214 (229)
10 1ufm_A COP9 complex subunit 4; 99.2 1.8E-11 6.3E-16 100.1 6.2 66 350-419 11-76 (84)
11 1qqe_A Vesicular transport pro 98.3 7.2E-05 2.5E-09 72.9 20.8 221 129-352 47-281 (292)
12 3ro3_A PINS homolog, G-protein 98.2 0.00014 4.8E-09 61.4 17.6 152 116-270 6-159 (164)
13 3chm_A COP9 signalosome comple 98.1 1.1E-05 3.9E-10 74.1 10.6 97 310-418 59-156 (169)
14 3ulq_A Response regulator aspa 98.1 0.00019 6.6E-09 71.9 20.1 179 116-297 100-282 (383)
15 3ro2_A PINS homolog, G-protein 98.0 0.00072 2.5E-08 64.1 21.2 175 119-296 83-280 (338)
16 3gw4_A Uncharacterized protein 98.0 0.0003 1E-08 62.8 17.5 152 118-272 25-179 (203)
17 3sf4_A G-protein-signaling mod 98.0 0.00093 3.2E-08 65.9 21.5 176 118-296 86-284 (406)
18 3sf4_A G-protein-signaling mod 98.0 0.0004 1.4E-08 68.6 18.7 174 121-297 189-365 (406)
19 3ro2_A PINS homolog, G-protein 97.9 0.0011 3.9E-08 62.7 21.1 176 119-297 43-241 (338)
20 4a1s_A PINS, partner of inscut 97.9 0.001 3.6E-08 66.3 21.2 177 117-296 124-320 (411)
21 4a1s_A PINS, partner of inscut 97.9 0.0029 9.8E-08 63.1 23.8 175 120-297 87-281 (411)
22 3q15_A PSP28, response regulat 97.9 0.00059 2E-08 68.4 18.8 178 116-296 98-278 (378)
23 2ifu_A Gamma-SNAP; membrane fu 97.8 0.0012 4.2E-08 64.6 19.3 203 129-336 46-258 (307)
24 3ulq_A Response regulator aspa 97.7 0.0041 1.4E-07 62.1 21.3 153 118-272 142-296 (383)
25 3gw4_A Uncharacterized protein 97.6 0.0023 8E-08 56.9 15.7 134 129-271 2-138 (203)
26 3q15_A PSP28, response regulat 97.5 0.013 4.4E-07 58.5 22.6 153 120-274 142-295 (378)
27 3ro3_A PINS homolog, G-protein 97.4 0.0029 1E-07 53.1 14.0 111 161-271 8-120 (164)
28 3nf1_A KLC 1, kinesin light ch 97.4 0.014 4.7E-07 55.0 19.5 152 120-272 70-227 (311)
29 3u3w_A Transcriptional activat 97.4 0.011 3.7E-07 57.0 18.9 143 126-272 82-228 (293)
30 1qqe_A Vesicular transport pro 97.4 0.012 4E-07 57.0 18.9 144 126-272 84-231 (292)
31 2qfc_A PLCR protein; TPR, HTH, 97.3 0.0055 1.9E-07 59.1 16.2 142 126-270 82-226 (293)
32 3nf1_A KLC 1, kinesin light ch 97.3 0.0064 2.2E-07 57.4 16.2 150 119-271 111-309 (311)
33 4b4t_Q 26S proteasome regulato 97.3 0.0045 1.5E-07 62.2 16.0 153 116-272 53-207 (434)
34 2ifu_A Gamma-SNAP; membrane fu 97.3 0.006 2.1E-07 59.5 16.5 142 127-273 84-227 (307)
35 1hz4_A MALT regulatory protein 97.3 0.012 4.2E-07 58.0 18.3 174 120-297 15-192 (373)
36 2ho1_A Type 4 fimbrial biogene 97.2 0.018 6.1E-07 53.0 18.0 143 114-273 32-174 (252)
37 3uq3_A Heat shock protein STI1 97.2 0.043 1.5E-06 50.0 20.3 143 121-273 7-172 (258)
38 3edt_B KLC 2, kinesin light ch 97.2 0.02 6.8E-07 52.8 18.0 151 120-271 44-200 (283)
39 3edt_B KLC 2, kinesin light ch 97.2 0.009 3.1E-07 55.2 15.3 147 121-268 87-280 (283)
40 1hh8_A P67PHOX, NCF-2, neutrop 97.2 0.0082 2.8E-07 54.0 14.5 146 118-281 5-162 (213)
41 1hz4_A MALT regulatory protein 97.1 0.052 1.8E-06 53.4 21.4 153 116-272 50-206 (373)
42 3u3w_A Transcriptional activat 97.1 0.0067 2.3E-07 58.5 13.8 142 125-269 121-266 (293)
43 2qfc_A PLCR protein; TPR, HTH, 97.1 0.0062 2.1E-07 58.8 13.4 144 123-269 119-266 (293)
44 3uq3_A Heat shock protein STI1 96.9 0.059 2E-06 49.1 18.2 142 124-273 43-206 (258)
45 2vq2_A PILW, putative fimbrial 96.9 0.053 1.8E-06 48.2 17.5 137 119-273 8-146 (225)
46 4i17_A Hypothetical protein; T 96.9 0.029 9.8E-07 51.3 15.6 136 123-272 11-149 (228)
47 3qky_A Outer membrane assembly 96.9 0.031 1E-06 52.4 16.0 142 123-273 19-181 (261)
48 4eqf_A PEX5-related protein; a 96.8 0.043 1.5E-06 53.6 17.4 63 207-273 182-246 (365)
49 3as5_A MAMA; tetratricopeptide 96.8 0.028 9.5E-07 48.2 13.7 136 117-273 6-143 (186)
50 2ho1_A Type 4 fimbrial biogene 96.7 0.051 1.7E-06 49.9 16.1 129 125-272 77-207 (252)
51 2yhc_A BAMD, UPF0169 lipoprote 96.6 0.12 4E-06 47.6 17.7 161 126-295 11-200 (225)
52 3qky_A Outer membrane assembly 96.6 0.12 4.1E-06 48.2 17.7 137 127-274 60-229 (261)
53 2q7f_A YRRB protein; TPR, prot 96.5 0.013 4.5E-07 53.2 10.5 139 114-273 18-158 (243)
54 3hym_B Cell division cycle pro 96.5 0.072 2.5E-06 50.4 16.0 133 126-273 132-269 (330)
55 2vq2_A PILW, putative fimbrial 96.5 0.14 4.9E-06 45.3 16.9 127 126-271 49-178 (225)
56 3as5_A MAMA; tetratricopeptide 96.5 0.062 2.1E-06 45.9 14.0 128 124-272 47-176 (186)
57 2fo7_A Synthetic consensus TPR 96.5 0.13 4.6E-06 41.0 15.1 126 126-272 8-135 (136)
58 3vtx_A MAMA; tetratricopeptide 96.4 0.092 3.1E-06 46.0 14.7 127 126-273 12-140 (184)
59 2vyi_A SGTA protein; chaperone 96.3 0.23 7.9E-06 39.6 15.5 100 162-273 12-113 (131)
60 2q7f_A YRRB protein; TPR, prot 96.2 0.16 5.4E-06 45.8 16.0 129 124-273 62-192 (243)
61 1fch_A Peroxisomal targeting s 96.2 0.27 9.1E-06 47.5 18.2 90 124-228 69-158 (368)
62 3hym_B Cell division cycle pro 96.2 0.083 2.8E-06 50.0 14.2 134 125-273 165-303 (330)
63 4eqf_A PEX5-related protein; a 96.1 0.3 1E-05 47.5 18.1 137 126-273 140-280 (365)
64 1elr_A TPR2A-domain of HOP; HO 96.0 0.14 4.9E-06 41.0 12.9 104 163-272 5-111 (131)
65 3sz7_A HSC70 cochaperone (SGT) 95.9 0.14 4.8E-06 44.3 13.3 101 163-275 12-114 (164)
66 3ieg_A DNAJ homolog subfamily 95.9 0.11 3.9E-06 49.5 13.7 130 128-272 129-266 (359)
67 3urz_A Uncharacterized protein 95.9 0.36 1.2E-05 43.8 16.5 142 123-272 8-189 (208)
68 2y4t_A DNAJ homolog subfamily 95.9 1.3 4.4E-05 44.0 22.1 188 120-327 27-229 (450)
69 1fch_A Peroxisomal targeting s 95.7 0.28 9.7E-06 47.3 16.0 137 124-273 103-250 (368)
70 3rkv_A Putative peptidylprolyl 95.6 0.24 8.3E-06 42.6 13.7 103 125-273 17-130 (162)
71 1na0_A Designed protein CTPR3; 95.6 0.41 1.4E-05 37.7 14.2 99 163-273 10-110 (125)
72 3vtx_A MAMA; tetratricopeptide 95.6 0.24 8.1E-06 43.2 13.7 125 127-272 47-173 (184)
73 3fp2_A TPR repeat-containing p 95.6 0.15 5.1E-06 52.2 14.2 133 125-272 316-460 (537)
74 3u4t_A TPR repeat-containing p 95.6 0.13 4.5E-06 47.5 12.6 129 126-272 10-140 (272)
75 2gw1_A Mitochondrial precursor 95.5 0.33 1.1E-05 49.1 16.4 102 165-272 375-481 (514)
76 3mkr_A Coatomer subunit epsilo 95.4 0.31 1.1E-05 47.1 15.2 147 122-297 104-252 (291)
77 3ieg_A DNAJ homolog subfamily 95.4 0.56 1.9E-05 44.5 16.7 137 122-273 6-153 (359)
78 2xpi_A Anaphase-promoting comp 95.3 0.35 1.2E-05 50.3 16.2 131 127-272 415-548 (597)
79 2vgx_A Chaperone SYCD; alterna 95.3 0.27 9.2E-06 42.4 12.8 96 165-272 24-121 (148)
80 1xnf_A Lipoprotein NLPI; TPR, 95.3 0.51 1.8E-05 43.3 15.4 33 240-272 215-247 (275)
81 3gyz_A Chaperone protein IPGC; 95.2 0.34 1.2E-05 42.5 13.3 101 162-274 36-138 (151)
82 2pl2_A Hypothetical conserved 95.2 0.27 9.1E-06 45.0 13.1 129 125-273 45-184 (217)
83 1xnf_A Lipoprotein NLPI; TPR, 95.1 0.23 7.8E-06 45.7 12.6 127 131-274 17-145 (275)
84 3cv0_A Peroxisome targeting si 95.1 0.62 2.1E-05 43.7 15.9 135 123-272 25-170 (327)
85 2fbn_A 70 kDa peptidylprolyl i 95.1 0.46 1.6E-05 42.3 14.2 103 165-273 41-155 (198)
86 2xev_A YBGF; tetratricopeptide 95.1 0.73 2.5E-05 37.2 14.4 103 166-274 6-110 (129)
87 3fp2_A TPR repeat-containing p 95.1 1.4 4.6E-05 44.9 19.4 146 116-274 192-344 (537)
88 2xcb_A PCRH, regulatory protei 95.0 0.3 1E-05 41.3 12.1 96 165-272 21-118 (142)
89 4b4t_T 26S proteasome regulato 95.0 0.18 6.1E-06 49.5 11.9 181 210-396 12-223 (274)
90 4i17_A Hypothetical protein; T 95.0 0.73 2.5E-05 41.6 15.4 136 125-273 48-213 (228)
91 3q49_B STIP1 homology and U bo 95.0 0.21 7.2E-06 41.1 10.7 97 164-272 11-109 (137)
92 3cv0_A Peroxisome targeting si 94.9 0.48 1.6E-05 44.5 14.4 123 129-272 148-272 (327)
93 2y4t_A DNAJ homolog subfamily 94.9 0.27 9.3E-06 49.1 13.3 200 126-344 150-361 (450)
94 2lni_A Stress-induced-phosphop 94.8 0.49 1.7E-05 38.0 12.4 97 165-273 19-117 (133)
95 1a17_A Serine/threonine protei 94.8 1 3.5E-05 37.8 14.8 130 120-268 14-145 (166)
96 4gco_A Protein STI-1; structur 94.7 0.24 8.1E-06 41.6 10.3 99 163-273 14-114 (126)
97 2gw1_A Mitochondrial precursor 94.6 0.4 1.4E-05 48.5 13.8 130 131-273 201-337 (514)
98 1elw_A TPR1-domain of HOP; HOP 94.6 0.81 2.8E-05 35.6 13.0 98 164-273 6-105 (118)
99 1a17_A Serine/threonine protei 94.6 0.94 3.2E-05 38.0 14.1 97 165-273 16-114 (166)
100 2dba_A Smooth muscle cell asso 94.6 0.5 1.7E-05 38.8 12.2 98 167-273 33-132 (148)
101 2xpi_A Anaphase-promoting comp 94.6 0.38 1.3E-05 50.0 13.8 194 126-343 380-581 (597)
102 2fo7_A Synthetic consensus TPR 94.5 0.7 2.4E-05 36.6 12.6 97 164-272 3-101 (136)
103 3upv_A Heat shock protein STI1 94.5 0.58 2E-05 38.1 12.3 95 165-271 7-103 (126)
104 1w3b_A UDP-N-acetylglucosamine 94.5 0.53 1.8E-05 46.2 14.0 29 243-271 342-370 (388)
105 3u4t_A TPR repeat-containing p 94.4 2.9 0.0001 38.1 22.1 128 128-273 46-175 (272)
106 4gyw_A UDP-N-acetylglucosamine 94.4 0.66 2.3E-05 51.4 15.9 129 124-273 14-144 (723)
107 1kt0_A FKBP51, 51 kDa FK506-bi 94.4 0.81 2.8E-05 47.3 15.7 108 119-272 268-383 (457)
108 2pl2_A Hypothetical conserved 94.1 0.31 1.1E-05 44.6 10.6 127 123-270 9-148 (217)
109 4abn_A Tetratricopeptide repea 94.0 0.75 2.6E-05 47.7 14.5 134 125-273 143-291 (474)
110 1p5q_A FKBP52, FK506-binding p 94.0 1.1 3.9E-05 44.1 15.2 106 162-273 147-263 (336)
111 2e2e_A Formate-dependent nitri 93.9 1.4 4.6E-05 38.1 14.0 123 130-273 21-148 (177)
112 1w3b_A UDP-N-acetylglucosamine 93.9 1.1 3.8E-05 43.8 15.0 124 128-272 144-269 (388)
113 4abn_A Tetratricopeptide repea 93.9 0.32 1.1E-05 50.5 11.4 129 121-271 104-252 (474)
114 4ga2_A E3 SUMO-protein ligase 93.6 0.37 1.3E-05 41.5 9.6 98 165-274 34-134 (150)
115 2vsy_A XCC0866; transferase, g 93.6 0.78 2.7E-05 48.3 14.0 130 123-273 27-161 (568)
116 4gcn_A Protein STI-1; structur 93.6 1.1 3.7E-05 37.3 12.2 98 169-272 15-115 (127)
117 2h6f_A Protein farnesyltransfe 93.4 0.69 2.4E-05 47.0 12.7 130 125-275 103-235 (382)
118 2kck_A TPR repeat; tetratricop 93.1 0.2 6.7E-06 39.0 6.4 98 166-273 10-110 (112)
119 1p5q_A FKBP52, FK506-binding p 93.0 2.5 8.5E-05 41.5 15.9 138 120-269 148-294 (336)
120 1ihg_A Cyclophilin 40; ppiase 93.0 1.3 4.5E-05 44.5 14.0 99 169-273 230-340 (370)
121 2l6j_A TPR repeat-containing p 92.6 1.2 4E-05 34.8 10.5 84 207-296 9-95 (111)
122 3k9i_A BH0479 protein; putativ 92.6 0.41 1.4E-05 38.9 7.9 63 205-273 30-94 (117)
123 2vsy_A XCC0866; transferase, g 92.5 0.87 3E-05 47.9 12.4 120 133-273 3-124 (568)
124 1na3_A Designed protein CTPR2; 92.4 0.95 3.3E-05 34.0 9.5 62 206-273 13-76 (91)
125 3mv2_B Coatomer subunit epsilo 92.4 0.66 2.2E-05 46.3 10.5 123 166-298 104-230 (310)
126 2yhc_A BAMD, UPF0169 lipoprote 92.3 2.5 8.5E-05 38.4 13.9 62 208-272 153-216 (225)
127 4ga2_A E3 SUMO-protein ligase 92.3 0.3 1E-05 42.0 7.0 60 208-273 37-98 (150)
128 3ma5_A Tetratricopeptide repea 92.2 0.32 1.1E-05 38.8 6.6 60 207-272 12-73 (100)
129 2kc7_A BFR218_protein; tetratr 91.9 0.68 2.3E-05 35.9 8.1 59 210-274 8-69 (99)
130 2pzi_A Probable serine/threoni 91.7 0.33 1.1E-05 53.0 8.2 128 123-272 437-566 (681)
131 3n71_A Histone lysine methyltr 91.5 5 0.00017 42.2 16.8 136 129-268 319-463 (490)
132 1hxi_A PEX5, peroxisome target 91.2 1.5 5.1E-05 36.1 10.0 92 169-272 24-117 (121)
133 2ond_A Cleavage stimulation fa 91.0 5.8 0.0002 37.8 15.5 117 136-273 81-202 (308)
134 1hh8_A P67PHOX, NCF-2, neutrop 90.9 2.7 9.3E-05 37.0 12.1 93 165-272 9-103 (213)
135 1ouv_A Conserved hypothetical 90.8 3.8 0.00013 37.9 13.6 122 123-269 10-143 (273)
136 2kat_A Uncharacterized protein 90.5 0.97 3.3E-05 36.2 8.0 62 205-272 22-85 (115)
137 1elw_A TPR1-domain of HOP; HOP 90.5 2 6.7E-05 33.3 9.7 61 206-272 8-70 (118)
138 2xev_A YBGF; tetratricopeptide 90.0 2.6 8.8E-05 33.8 10.3 62 209-273 9-72 (129)
139 3sz7_A HSC70 cochaperone (SGT) 90.0 1.8 6.1E-05 37.0 9.8 64 203-272 12-77 (164)
140 1elr_A TPR2A-domain of HOP; HO 89.5 2.2 7.6E-05 33.6 9.4 61 206-272 8-70 (131)
141 3q49_B STIP1 homology and U bo 89.4 2 6.7E-05 34.9 9.2 61 206-272 13-75 (137)
142 2kck_A TPR repeat; tetratricop 89.3 1.7 5.8E-05 33.4 8.3 59 208-272 12-72 (112)
143 2hr2_A Hypothetical protein; a 89.2 7.7 0.00026 34.6 13.5 115 120-272 12-134 (159)
144 3urz_A Uncharacterized protein 89.2 5.9 0.0002 35.4 13.1 63 206-274 58-122 (208)
145 3mv2_B Coatomer subunit epsilo 89.1 5.1 0.00017 39.8 13.4 193 123-336 105-307 (310)
146 3mkr_A Coatomer subunit epsilo 88.9 12 0.00041 35.7 15.8 135 114-273 29-163 (291)
147 2h6f_A Protein farnesyltransfe 88.6 6.6 0.00023 39.6 14.2 118 163-297 98-218 (382)
148 4gco_A Protein STI-1; structur 88.5 1.6 5.4E-05 36.3 8.0 57 210-272 21-79 (126)
149 3upv_A Heat shock protein STI1 88.4 2.9 0.0001 33.7 9.5 60 208-273 10-71 (126)
150 4gcn_A Protein STI-1; structur 88.3 1.5 5.1E-05 36.4 7.7 57 210-272 16-74 (127)
151 1ouv_A Conserved hypothetical 88.2 14 0.00046 34.0 15.3 115 132-271 91-217 (273)
152 3n71_A Histone lysine methyltr 88.2 3.8 0.00013 43.1 12.5 92 175-268 322-421 (490)
153 2vyi_A SGTA protein; chaperone 88.2 7.8 0.00027 30.2 13.7 119 117-256 10-130 (131)
154 1na0_A Designed protein CTPR3; 88.2 3.4 0.00012 32.1 9.6 64 204-273 11-76 (125)
155 3qww_A SET and MYND domain-con 88.2 1.6 5.3E-05 45.4 9.3 91 176-268 312-410 (433)
156 2dba_A Smooth muscle cell asso 88.0 4 0.00014 33.2 10.2 69 202-273 28-98 (148)
157 2lni_A Stress-induced-phosphop 87.9 3 0.0001 33.2 9.2 61 206-272 20-82 (133)
158 1hxi_A PEX5, peroxisome target 87.8 1.9 6.5E-05 35.5 8.0 59 209-273 24-84 (121)
159 2xcb_A PCRH, regulatory protei 87.7 3.2 0.00011 34.7 9.6 60 208-273 24-85 (142)
160 2vgx_A Chaperone SYCD; alterna 87.4 3.2 0.00011 35.4 9.5 60 208-273 27-88 (148)
161 2ond_A Cleavage stimulation fa 87.4 19 0.00064 34.1 16.1 126 125-269 105-232 (308)
162 4g1t_A Interferon-induced prot 87.1 9.8 0.00034 37.9 14.5 138 130-273 62-208 (472)
163 2pzi_A Probable serine/threoni 86.5 11 0.00038 40.8 15.4 126 130-273 402-533 (681)
164 3gyz_A Chaperone protein IPGC; 86.4 3.8 0.00013 35.6 9.5 61 208-274 42-104 (151)
165 2if4_A ATFKBP42; FKBP-like, al 85.9 2.2 7.6E-05 42.0 8.7 60 207-272 235-296 (338)
166 4g1t_A Interferon-induced prot 85.8 7.8 0.00027 38.6 12.9 109 164-273 53-171 (472)
167 2c2l_A CHIP, carboxy terminus 85.8 24 0.00081 33.2 20.4 96 165-272 7-104 (281)
168 4gyw_A UDP-N-acetylglucosamine 85.2 6.1 0.00021 43.6 12.6 100 162-273 9-110 (723)
169 2v5f_A Prolyl 4-hydroxylase su 84.2 2.6 8.9E-05 33.9 6.9 66 208-273 11-79 (104)
170 2fbn_A 70 kDa peptidylprolyl i 84.0 5.7 0.00019 34.9 9.7 65 208-272 44-120 (198)
171 2l6j_A TPR repeat-containing p 83.9 6.9 0.00023 30.1 9.2 95 163-263 5-101 (111)
172 3ma5_A Tetratricopeptide repea 83.7 10 0.00036 29.5 10.3 35 240-274 7-41 (100)
173 1wao_1 Serine/threonine protei 83.5 2 6.9E-05 44.7 7.4 115 129-264 16-134 (477)
174 1wao_1 Serine/threonine protei 83.0 10 0.00036 39.2 12.7 89 174-274 18-108 (477)
175 3qwp_A SET and MYND domain-con 82.8 2.8 9.6E-05 43.3 8.1 91 176-268 301-399 (429)
176 2ooe_A Cleavage stimulation fa 82.3 38 0.0013 34.7 16.7 27 245-271 430-456 (530)
177 2r5s_A Uncharacterized protein 82.2 5.4 0.00018 34.5 8.7 125 126-272 13-140 (176)
178 1ihg_A Cyclophilin 40; ppiase 81.6 29 0.00098 34.5 15.0 128 123-262 227-363 (370)
179 3rkv_A Putative peptidylprolyl 80.9 3.9 0.00013 34.8 7.1 65 209-273 18-96 (162)
180 1rz4_A Eukaryotic translation 80.7 3.1 0.00011 39.4 6.9 116 310-441 99-219 (226)
181 1wi9_A Protein C20ORF116 homol 80.6 4.3 0.00015 31.5 6.3 49 366-418 18-66 (72)
182 3rjv_A Putative SEL1 repeat pr 80.3 25 0.00087 31.4 12.9 119 129-269 28-158 (212)
183 2heo_A Z-DNA binding protein 1 80.2 3.5 0.00012 31.1 5.8 41 368-415 24-64 (67)
184 2ooe_A Cleavage stimulation fa 79.5 26 0.0009 35.9 14.3 101 163-273 322-424 (530)
185 3ffl_A Anaphase-promoting comp 78.2 5 0.00017 36.3 7.0 61 209-269 27-92 (167)
186 1pc2_A Mitochondria fission pr 78.2 4.5 0.00015 36.0 6.7 36 237-272 68-103 (152)
187 3qou_A Protein YBBN; thioredox 78.0 27 0.00093 32.9 12.9 130 123-273 121-252 (287)
188 1na3_A Designed protein CTPR2; 77.9 5.9 0.0002 29.3 6.6 36 238-273 7-42 (91)
189 3k9i_A BH0479 protein; putativ 77.7 8.5 0.00029 30.7 7.9 37 237-273 24-60 (117)
190 1qgp_A Protein (double strande 77.6 5.2 0.00018 31.1 6.2 37 369-409 31-67 (77)
191 1qbj_A Protein (double-strande 76.8 8.2 0.00028 30.5 7.2 51 369-424 27-77 (81)
192 4f3v_A ESX-1 secretion system 74.4 32 0.0011 33.4 12.3 138 117-272 102-240 (282)
193 3ffl_A Anaphase-promoting comp 74.0 41 0.0014 30.2 11.9 133 112-265 13-147 (167)
194 2e2e_A Formate-dependent nitri 72.1 12 0.00041 31.9 7.9 61 206-272 48-113 (177)
195 3ly7_A Transcriptional activat 71.9 88 0.003 31.6 15.3 56 212-272 287-342 (372)
196 4e6h_A MRNA 3'-END-processing 71.8 1.1E+02 0.0037 33.4 17.1 159 126-297 385-559 (679)
197 2c2l_A CHIP, carboxy terminus 71.0 14 0.00046 35.0 8.7 60 208-273 10-71 (281)
198 4f3v_A ESX-1 secretion system 70.1 22 0.00077 34.5 10.0 94 165-268 105-199 (282)
199 2v5f_A Prolyl 4-hydroxylase su 67.3 7.6 0.00026 31.0 5.1 28 242-269 7-34 (104)
200 1kt0_A FKBP51, 51 kDa FK506-bi 66.8 19 0.00064 36.8 9.2 65 208-272 274-349 (457)
201 3qww_A SET and MYND domain-con 65.4 37 0.0013 34.9 11.1 95 132-228 311-408 (433)
202 2kat_A Uncharacterized protein 65.2 15 0.0005 28.9 6.5 33 241-273 20-52 (115)
203 1nzn_A CGI-135 protein, fissio 64.4 16 0.00055 31.3 6.8 37 236-272 70-106 (126)
204 2cg4_A Regulatory protein ASNC 63.9 17 0.00058 31.3 7.1 41 367-411 20-63 (152)
205 3o48_A Mitochondria fission 1 63.3 17 0.00058 31.6 6.7 36 237-272 75-110 (134)
206 2htj_A P fimbrial regulatory p 62.3 19 0.00066 27.5 6.4 34 368-405 13-46 (81)
207 3t5v_A Nuclear mRNA export pro 61.9 32 0.0011 34.0 9.4 66 323-394 177-246 (316)
208 1xn7_A Hypothetical protein YH 58.8 13 0.00044 29.1 4.7 38 363-404 10-47 (78)
209 3bee_A Putative YFRE protein; 57.8 9.9 0.00034 30.2 4.1 49 218-272 25-75 (93)
210 4b4t_P 26S proteasome regulato 57.0 1.7E+02 0.006 29.8 16.3 66 202-267 137-204 (445)
211 1xi4_A Clathrin heavy chain; a 56.8 1.1E+02 0.0039 36.6 14.1 59 126-185 1056-1128(1630)
212 3txn_A 26S proteasome regulato 56.3 1.1E+02 0.0037 31.1 12.6 135 130-268 30-167 (394)
213 2k02_A Ferrous iron transport 55.8 13 0.00045 29.8 4.4 40 363-406 10-49 (87)
214 1y8m_A FIS1; mitochondria, unk 54.4 18 0.00063 31.8 5.4 35 238-272 75-109 (144)
215 1jgs_A Multiple antibiotic res 51.6 60 0.002 26.5 8.3 40 368-411 47-86 (138)
216 3rjv_A Putative SEL1 repeat pr 51.0 32 0.0011 30.6 6.9 92 165-271 21-120 (212)
217 2r5s_A Uncharacterized protein 50.3 6.4 0.00022 34.0 1.9 56 210-271 14-71 (176)
218 2kc7_A BFR218_protein; tetratr 48.8 35 0.0012 25.6 5.9 30 244-273 4-33 (99)
219 2ia0_A Putative HTH-type trans 48.7 31 0.0011 30.6 6.3 41 367-411 29-72 (171)
220 3qwp_A SET and MYND domain-con 48.4 1E+02 0.0036 31.3 11.0 98 129-228 297-397 (429)
221 2cfx_A HTH-type transcriptiona 47.9 29 0.00099 29.6 5.7 41 366-410 16-59 (144)
222 2hr2_A Hypothetical protein; a 46.8 81 0.0028 27.8 8.6 73 118-193 56-133 (159)
223 3i4p_A Transcriptional regulat 46.6 24 0.00083 30.8 5.1 42 366-411 14-58 (162)
224 2p5v_A Transcriptional regulat 45.7 31 0.0011 29.9 5.7 40 367-410 22-64 (162)
225 2xm6_A Protein corresponding t 45.6 1.4E+02 0.0049 29.9 11.6 27 242-268 185-215 (490)
226 2jt1_A PEFI protein; solution 45.1 30 0.001 26.9 4.8 33 368-404 23-55 (77)
227 2dbb_A Putative HTH-type trans 44.9 31 0.0011 29.5 5.5 40 367-410 21-63 (151)
228 2y75_A HTH-type transcriptiona 44.7 38 0.0013 28.2 5.9 46 368-417 25-70 (129)
229 1klx_A Cysteine rich protein B 44.1 26 0.00089 29.2 4.8 72 188-269 47-126 (138)
230 2pn6_A ST1022, 150AA long hypo 41.9 26 0.0009 29.9 4.5 40 367-410 15-57 (150)
231 3e4b_A ALGK; tetratricopeptide 41.7 46 0.0016 33.7 7.1 157 115-290 245-408 (452)
232 3ax2_A Mitochondrial import re 41.2 40 0.0014 26.1 4.9 28 245-272 22-49 (73)
233 4e6h_A MRNA 3'-END-processing 41.1 3.3E+02 0.011 29.4 14.2 168 164-343 380-575 (679)
234 2if4_A ATFKBP42; FKBP-like, al 40.7 23 0.00077 34.6 4.3 31 242-272 232-262 (338)
235 1sfx_A Conserved hypothetical 40.6 1E+02 0.0034 23.8 7.6 38 367-408 32-69 (109)
236 3lwf_A LIN1550 protein, putati 40.1 38 0.0013 29.9 5.3 48 369-420 44-91 (159)
237 2v79_A DNA replication protein 39.9 17 0.00058 31.3 2.9 62 368-443 50-113 (135)
238 3t8r_A Staphylococcus aureus C 38.8 28 0.00094 30.1 4.1 47 369-419 28-74 (143)
239 3cuo_A Uncharacterized HTH-typ 38.2 82 0.0028 24.2 6.6 37 368-408 37-73 (99)
240 2d1h_A ST1889, 109AA long hypo 37.8 1.1E+02 0.0038 23.5 7.5 38 367-408 34-71 (109)
241 2w25_A Probable transcriptiona 36.9 54 0.0018 27.9 5.7 40 367-410 19-61 (150)
242 2cyy_A Putative HTH-type trans 36.3 44 0.0015 28.6 5.1 40 367-410 19-61 (151)
243 2e1c_A Putative HTH-type trans 34.7 54 0.0018 29.0 5.5 40 367-410 39-81 (171)
244 2gxg_A 146AA long hypothetical 34.6 61 0.0021 26.7 5.6 39 367-409 48-86 (146)
245 3k69_A Putative transcription 34.5 39 0.0013 29.9 4.5 47 368-418 27-73 (162)
246 2hzt_A Putative HTH-type trans 34.2 93 0.0032 24.9 6.5 41 367-411 25-66 (107)
247 1ub9_A Hypothetical protein PH 34.1 1.5E+02 0.0053 22.5 9.8 37 367-407 28-64 (100)
248 2fa5_A Transcriptional regulat 34.0 1.1E+02 0.0036 25.8 7.2 39 367-409 61-99 (162)
249 3tqn_A Transcriptional regulat 33.7 72 0.0025 26.0 5.8 45 367-417 30-75 (113)
250 3qou_A Protein YBBN; thioredox 33.7 2.9E+02 0.0098 25.5 14.2 92 172-273 127-218 (287)
251 2xm6_A Protein corresponding t 33.5 3.7E+02 0.013 26.7 13.8 54 210-269 191-252 (490)
252 1ylf_A RRF2 family protein; st 33.2 42 0.0014 28.9 4.4 47 368-419 29-75 (149)
253 1oyi_A Double-stranded RNA-bin 32.5 44 0.0015 26.4 4.0 31 370-404 31-61 (82)
254 2vn2_A DNAD, chromosome replic 32.5 61 0.0021 27.2 5.2 62 370-444 52-114 (128)
255 1klx_A Cysteine rich protein B 32.4 53 0.0018 27.2 4.9 54 210-269 33-90 (138)
256 1om2_A Protein (mitochondrial 32.4 1.1E+02 0.0039 24.7 6.5 48 235-284 12-62 (95)
257 3eco_A MEPR; mutlidrug efflux 32.1 1.6E+02 0.0053 23.9 7.8 39 369-411 47-85 (139)
258 3k0l_A Repressor protein; heli 32.0 88 0.003 26.5 6.4 40 368-411 59-98 (162)
259 4fhn_B Nucleoporin NUP120; pro 31.5 1.6E+02 0.0053 34.0 10.1 52 208-267 818-869 (1139)
260 1ku9_A Hypothetical protein MJ 31.2 64 0.0022 26.6 5.2 39 368-410 40-78 (152)
261 2hr3_A Probable transcriptiona 31.1 68 0.0023 26.5 5.3 39 367-409 48-86 (147)
262 1i1g_A Transcriptional regulat 31.1 57 0.002 27.2 4.9 36 367-406 16-51 (141)
263 3bdd_A Regulatory protein MARR 30.8 97 0.0033 25.2 6.3 39 368-410 44-82 (142)
264 2fbh_A Transcriptional regulat 30.2 77 0.0026 26.0 5.5 41 366-410 49-89 (146)
265 2nnn_A Probable transcriptiona 29.6 87 0.003 25.5 5.7 41 368-412 51-91 (140)
266 3by6_A Predicted transcription 29.3 66 0.0022 26.9 4.9 45 367-417 32-77 (126)
267 4ham_A LMO2241 protein; struct 29.0 1.2E+02 0.004 25.5 6.5 48 365-418 33-81 (134)
268 1xd7_A YWNA; structural genomi 29.0 61 0.0021 27.7 4.7 46 368-419 23-68 (145)
269 3tgn_A ADC operon repressor AD 29.0 59 0.002 26.9 4.6 38 370-411 52-89 (146)
270 2oqg_A Possible transcriptiona 28.8 1.4E+02 0.0049 23.5 6.8 37 368-408 33-69 (114)
271 4gq2_M Nucleoporin NUP120; bet 28.8 53 0.0018 37.3 5.4 52 208-267 816-867 (950)
272 3ech_A MEXR, multidrug resista 28.7 71 0.0024 26.4 5.0 40 368-411 50-89 (142)
273 1zu2_A Mitochondrial import re 28.6 56 0.0019 28.9 4.4 30 243-272 83-123 (158)
274 3neu_A LIN1836 protein; struct 28.4 92 0.0031 25.9 5.7 46 366-417 33-79 (125)
275 3bja_A Transcriptional regulat 28.3 1.1E+02 0.0037 24.8 6.1 40 367-410 45-84 (139)
276 2kko_A Possible transcriptiona 27.0 59 0.002 26.2 4.0 37 368-408 37-73 (108)
277 3bro_A Transcriptional regulat 26.8 67 0.0023 26.3 4.5 39 369-411 50-88 (141)
278 3mkq_B Coatomer subunit alpha; 26.8 3.5E+02 0.012 24.2 11.2 86 129-228 15-115 (177)
279 3oop_A LIN2960 protein; protei 26.3 93 0.0032 25.6 5.3 39 368-410 50-88 (143)
280 2fbi_A Probable transcriptiona 26.1 1.3E+02 0.0045 24.3 6.3 41 368-412 49-89 (142)
281 3g3z_A NMB1585, transcriptiona 26.1 1.1E+02 0.0037 25.3 5.7 39 368-410 44-82 (145)
282 3bpv_A Transcriptional regulat 26.0 1.5E+02 0.0051 23.9 6.6 41 368-412 42-82 (138)
283 4a5x_A MITD1, MIT domain-conta 26.0 2.4E+02 0.0081 22.1 8.8 47 131-177 28-79 (86)
284 2nyx_A Probable transcriptiona 25.9 1.1E+02 0.0038 26.1 6.0 40 368-411 58-97 (168)
285 2qvo_A Uncharacterized protein 25.8 1.2E+02 0.0041 23.5 5.6 30 370-403 31-60 (95)
286 2rdp_A Putative transcriptiona 25.6 1.2E+02 0.0042 24.9 6.0 39 368-410 55-93 (150)
287 3bj6_A Transcriptional regulat 25.6 1.1E+02 0.0037 25.4 5.7 38 368-409 53-90 (152)
288 2v6y_A AAA family ATPase, P60 25.0 1.4E+02 0.0048 23.2 5.8 49 130-178 21-75 (83)
289 3jth_A Transcription activator 24.9 1.4E+02 0.0047 23.1 5.9 36 368-407 35-70 (98)
290 3s2w_A Transcriptional regulat 24.8 2.2E+02 0.0077 23.7 7.7 40 368-411 63-102 (159)
291 1lj9_A Transcriptional regulat 24.6 1.3E+02 0.0043 24.6 5.9 39 368-410 42-80 (144)
292 2xvc_A ESCRT-III, SSO0910; cel 24.6 58 0.002 24.1 3.0 33 368-404 24-56 (59)
293 3hsr_A HTH-type transcriptiona 24.5 54 0.0018 27.2 3.5 40 368-411 49-88 (140)
294 2w2u_A Hypothetical P60 katani 24.4 1.7E+02 0.0057 22.8 6.1 47 129-175 28-80 (83)
295 3pqk_A Biofilm growth-associat 24.3 2.5E+02 0.0085 21.7 7.7 37 368-408 35-71 (102)
296 3boq_A Transcriptional regulat 24.3 62 0.0021 27.3 3.9 39 367-409 60-98 (160)
297 1z7u_A Hypothetical protein EF 24.3 74 0.0025 25.7 4.2 39 368-410 34-73 (112)
298 2a61_A Transcriptional regulat 24.2 1.7E+02 0.0058 23.8 6.6 42 367-412 45-86 (145)
299 3nqo_A MARR-family transcripti 24.1 75 0.0026 28.1 4.5 40 368-411 56-95 (189)
300 2qww_A Transcriptional regulat 24.1 1E+02 0.0035 25.7 5.2 34 368-405 54-87 (154)
301 2eth_A Transcriptional regulat 23.8 1.5E+02 0.0051 24.7 6.3 39 368-410 57-95 (154)
302 2v6x_A Vacuolar protein sortin 23.7 1.9E+02 0.0065 22.3 6.3 62 117-178 10-77 (85)
303 3nrv_A Putative transcriptiona 23.6 1E+02 0.0035 25.5 5.1 39 367-409 52-90 (148)
304 1s3j_A YUSO protein; structura 23.6 1.3E+02 0.0043 25.0 5.7 39 367-409 49-87 (155)
305 2ek5_A Predicted transcription 23.3 1.2E+02 0.004 25.5 5.4 44 368-417 26-70 (129)
306 4g26_A Pentatricopeptide repea 23.1 2.6E+02 0.009 28.8 9.2 61 203-268 106-168 (501)
307 3cjn_A Transcriptional regulat 23.0 1.3E+02 0.0043 25.4 5.7 38 368-409 65-102 (162)
308 1r1u_A CZRA, repressor protein 22.9 1.8E+02 0.0061 23.0 6.2 37 368-408 38-74 (106)
309 1on2_A Transcriptional regulat 22.9 1.1E+02 0.0036 25.5 5.0 35 367-405 20-54 (142)
310 1xmk_A Double-stranded RNA-spe 22.8 1.2E+02 0.0042 23.5 4.9 36 365-404 21-57 (79)
311 3deu_A Transcriptional regulat 22.6 80 0.0027 27.2 4.3 40 367-410 66-105 (166)
312 2lnb_A Z-DNA-binding protein 1 22.6 1.3E+02 0.0045 23.6 4.9 38 362-403 27-64 (80)
313 4ev0_A Transcription regulator 22.5 2.9E+02 0.01 23.9 8.3 43 368-418 162-204 (216)
314 4hbl_A Transcriptional regulat 22.3 88 0.003 26.1 4.4 40 368-411 54-93 (149)
315 4b4t_S RPN3, 26S proteasome re 22.3 1.6E+02 0.0056 31.1 7.2 75 116-195 228-303 (523)
316 2pex_A Transcriptional regulat 22.1 1.2E+02 0.004 25.3 5.2 40 367-410 59-98 (153)
317 3u64_A Protein TP_0956; tetrat 22.1 4.5E+02 0.015 25.7 9.9 87 243-364 202-296 (301)
318 3cdh_A Transcriptional regulat 22.1 62 0.0021 27.2 3.4 38 368-409 56-93 (155)
319 2x4h_A Hypothetical protein SS 22.0 99 0.0034 25.5 4.7 34 367-404 29-62 (139)
320 1u2w_A CADC repressor, cadmium 21.9 3.2E+02 0.011 22.1 8.4 36 367-406 54-89 (122)
321 1y0u_A Arsenical resistance op 21.8 1.2E+02 0.0043 23.4 5.0 34 368-405 42-75 (96)
322 3u2r_A Regulatory protein MARR 21.6 1.1E+02 0.0036 26.2 4.9 41 368-412 61-101 (168)
323 2bv6_A MGRA, HTH-type transcri 21.5 1.6E+02 0.0053 24.1 5.8 38 368-409 50-87 (142)
324 3fm5_A Transcriptional regulat 21.0 82 0.0028 26.2 4.0 39 368-410 53-91 (150)
325 2pi2_A Replication protein A 3 21.0 21 0.0007 34.5 0.0 38 368-409 223-261 (270)
326 2pg4_A Uncharacterized protein 20.9 50 0.0017 25.7 2.3 32 369-404 30-62 (95)
327 4b8x_A SCO5413, possible MARR- 20.9 77 0.0026 26.8 3.8 41 368-412 50-90 (147)
328 1uly_A Hypothetical protein PH 20.5 1.6E+02 0.0054 26.5 6.0 35 368-406 32-66 (192)
329 3lpz_A GET4 (YOR164C homolog); 20.4 6.3E+02 0.021 24.9 15.4 28 316-343 251-278 (336)
330 3e6m_A MARR family transcripti 20.2 1.2E+02 0.004 25.7 4.8 39 368-410 66-104 (161)
331 3kp7_A Transcriptional regulat 20.1 1.3E+02 0.0043 25.1 5.0 36 366-405 48-83 (151)
332 1wfd_A Hypothetical protein 15 20.1 3.2E+02 0.011 21.5 9.6 65 114-178 9-79 (93)
333 2frh_A SARA, staphylococcal ac 20.0 58 0.002 26.8 2.7 39 368-410 52-90 (127)
No 1
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-106 Score=857.08 Aligned_cols=458 Identities=32% Similarity=0.545 Sum_probs=234.5
Q ss_pred CcchHHHHHHHHHHHHhhhcccchhHHHHHHhhhHHHhcc--cChHHHHHHHHHHcCCCchhHHHHHhcCCCCCCccc--
Q 011352 22 TPSTLHHLKEIASLMETGAHAREVRRIMRAVRLTMALRRK--LKAPVLSAFLNFALAPGSEAHSRLLSYLPKEDEHEM-- 97 (488)
Q Consensus 22 ~~~~~~~i~~~~~li~k~v~~~~~r~~~r~lr~~~~~r~~--l~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-- 97 (488)
++.++++|++++++|||||.++|+|||+||||.++++||+ |++++|..+|+.+||++++.+..|+++|+.++..++
T Consensus 27 ~~~~~~~i~~~~~~i~k~v~~~~~r~~~r~lr~~~~~rk~~~l~~~~l~~~i~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 106 (523)
T 4b4t_S 27 EEDQVQELLKVLNEISKTTLTLDPRYIWRSLKDLSSLRNQELLNAETLCFTVNVLYPDSSSFKKNLLKFITSNHKSSVPG 106 (523)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHCCCCcHHHHHHHHHhcccccccccc
Confidence 7888999999999999999999999999999999999999 999999999999999999999999999986543222
Q ss_pred --ccccCCCC------CCCCCCCCCCHHHHHHHHHHHHHHHcccCHHHHHHHHHHHH--HHHHhhhhhhHHHHHHHHHHH
Q 011352 98 --EVDTASSG------APAPAKHPLPELEIYCYLLVLIFLIDKKRYNEAKACSSASI--ARLKNMNRRTVDVLAARLYFY 167 (488)
Q Consensus 98 --~~~~~~~~------~~~~~~~~~p~~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv--~~l~~~~~r~ld~l~ak~~~y 167 (488)
+.+...+. ...+..+++||+|+|+++|++++++|+++|++|.+|+..++ +.++.+||||+|.|.||+|||
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~pE~~~y~~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY 186 (523)
T 4b4t_S 107 SAELRNSYPASFYSVNTEKKTIEVTAEINCFMHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFY 186 (523)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhccccCcccccccCCCCCCCCCChHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH
Confidence 22111111 11245667999999999999999999999999999999999 679999999999999999999
Q ss_pred HHHHHHhhccHH----------HHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcCCCCcc-CCh
Q 011352 168 YSLCYELTGDLA----------EIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEA-HSN 236 (488)
Q Consensus 168 ~s~~~e~~~~l~----------~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~~pe~-~~~ 236 (488)
|+++||+.+++. ++|+.|++++|||++|||..||++++|+++|+|++.|.|+||.+++++++||++ .++
T Consensus 187 ~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn 266 (523)
T 4b4t_S 187 IYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSS 266 (523)
T ss_dssp ----------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCH
T ss_pred HHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCH
Confidence 999999988664 489999999999999999999999999999999999999999999999999986 899
Q ss_pred hHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc--cchhhHHHHHHHHHHHHHhcCCCCCcchhcchhhhhhhhhHH
Q 011352 237 QQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV--AALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYF 314 (488)
Q Consensus 237 ~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~--~~~~~~~~alK~lIlv~LL~G~iP~~~ll~~~~l~~~l~~Y~ 314 (488)
+|+++|+||.|||++++++|.+|+++|.+|+++||+ .+.+|++.++||+|+|+||+|++|++++|.++.+++.|.||.
T Consensus 267 ~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~~L~pY~ 346 (523)
T 4b4t_S 267 SLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYY 346 (523)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCChHHhhchhHHHHHHHHH
Confidence 999999999999999999999999999999999998 357999999999999999999999999999999998999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHcchhhhcCcchHHHHHHHHHHHHHhHHHHHHhhccccHHHHHHHhcCCCCCChHHHHHHH
Q 011352 315 ELTNAVRIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIV 394 (488)
Q Consensus 315 ~L~~Av~~Gdl~~f~~~l~~~~~~f~~D~~~~Lv~rLr~~vir~~ir~i~~~YsrIsL~dIa~~L~l~~~~d~eeaE~il 394 (488)
+|++||+.||+..|++++++|+..|.+||||+||+||+++|+|++||+++++|++||++|||.+|+++++ ++|||+|
T Consensus 347 ~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~---eeaE~iV 423 (523)
T 4b4t_S 347 HLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSE---QTVEYMV 423 (523)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHS---SCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCH---HHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876 8999999
Q ss_pred HHHHHcCCcceEeeCCCcEEEEcccCcccCCccccHHHHHHHHHHHHhhHHHHHhcCCCCCCCc-chhhHHHHHHhhH-H
Q 011352 395 SKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSHK-EKESAEKRRERQQ-Q 472 (488)
Q Consensus 395 a~mI~dG~I~A~Id~~~G~v~~~~~~dv~s~~ep~~~l~~rI~~~l~l~~~~v~amr~p~~~~~-~~~~~~~~~~~~~-~ 472 (488)
++||.||+|+|+|||++|||.|++..|+|++.+|+.+|++||+||++||||+||+||||++.++ +.+++++++++++ .
T Consensus 424 AkmI~dG~I~A~Idh~~g~v~ske~~d~yst~ep~~af~~RI~~cl~L~ne~vkaMryp~~~~~~~~~~~~~~~~~~~~~ 503 (523)
T 4b4t_S 424 SRAIRDGVIEAKINHEDGFIETTELLNIYDSEDPQQVFDERIKFANQLHDEYLVSMRYPEDKKTQQNEKSENGENDDDTL 503 (523)
T ss_dssp HHHHHHTSSCCEECTTTCCEECCSSSCC----------------------------------------------------
T ss_pred HHHHHcCCceEEEecCCCEEEeCccccccccHHHHHHHHHHHHHHHHHHHHHHHHccCCcccchhhHHHHHHHhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999998 7777776665532 4
Q ss_pred HHHHHHhhcc
Q 011352 473 EQELAKHIAE 482 (488)
Q Consensus 473 ~~e~~~~~~~ 482 (488)
+.+++.+++|
T Consensus 504 ~~~~~d~~~d 513 (523)
T 4b4t_S 504 DGDLMDDMSD 513 (523)
T ss_dssp ----------
T ss_pred hhcccccccc
Confidence 5555555543
No 2
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-47 Score=401.02 Aligned_cols=329 Identities=14% Similarity=0.063 Sum_probs=268.6
Q ss_pred CCCCHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHH-hhhhh-hHHH--HHHHHHHH---HHHHHHh----------
Q 011352 112 HPLPELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLK-NMNRR-TVDV--LAARLYFY---YSLCYEL---------- 174 (488)
Q Consensus 112 ~~~p~~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~-~~~~r-~ld~--l~ak~~~y---~s~~~e~---------- 174 (488)
++.....++...|..+.-+|.....+++++...+++.+. .++.. ..|. +.--++.. .......
T Consensus 57 ~w~~f~~~v~~yl~~~rdv~~~sl~~s~dll~~~~~~l~~a~~~~~~~wi~~l~p~~~~~~~~l~~~a~~lD~~~~~~~~ 136 (455)
T 3t5v_B 57 NDTRFKIMCTSFLNYARDVDPWSAWSSSDLIFEFYQCLINCLINDNAPHIEMLIPVATRETEFIINLAGKLDSFHLQLHT 136 (455)
T ss_dssp SCHHHHHHHHHHHHHHHHCCTTCSSTTHHHHHHHHHHHHTTSSSTTCTTHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTC
T ss_pred cchhHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHcCCCCchHHHhHHHHHHHHHHHHHHHHHhhhhHhhhcc
Confidence 344456666667777777777777777777777777644 33333 2454 32211111 0011111
Q ss_pred --hccHHHHHHHHHHHHHHhhh-c------C---CcccHHHHHHHHHHHHHccCCHHHHHHHHhcC---CC---CccCCh
Q 011352 175 --TGDLAEIRGNLLALHRIATL-R------H---DELGQETLLNLLLRNYLHYNLYDQAEKLRSKA---PR---FEAHSN 236 (488)
Q Consensus 175 --~~~l~~~r~~L~~~~rta~~-~------~---~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~---~~---pe~~~~ 236 (488)
...++.+.+.++.+|..|.. | + +++|.++++|+++|+||+.|++++|++++++. .+ .+.+|.
T Consensus 137 ~~~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~ 216 (455)
T 3t5v_B 137 RSHQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQL 216 (455)
T ss_dssp CTTHHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCH
T ss_pred cchhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCc
Confidence 13578999999999987632 2 2 78999999999999999999999999999885 22 346999
Q ss_pred hHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-CCcc-----chhhHHHHHHHHHHHHHhcCCCCCcchhcchhhhhhh
Q 011352 237 QQFCRYLFYLGKIRTIQLEYTDAKESLLQAARK-APVA-----ALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKAL 310 (488)
Q Consensus 237 ~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~-~P~~-----~~~~~~~alK~lIlv~LL~G~iP~~~ll~~~~l~~~l 310 (488)
+|+++|+||+||+++.+++|.+|+++|.+||++ ||.. +.++++.|+||+|||+||+|++|++.+++++.. +.+
T Consensus 217 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~ll~k~~~-~~L 295 (455)
T 3t5v_B 217 DQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKWGPLRPFLS-QET 295 (455)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHGGGSC-HHH
T ss_pred cceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCCCCHHHHcccch-HHH
Confidence 999999999999999999999999999999999 9985 589999999999999999999999999988542 357
Q ss_pred hh-HHHHHHHHhcCCHHHHHHHHHHcchhhhcCcc-hHHHHHHHHHHHHHhHHHH----HHhh--ccccHHHHHHHhcCC
Q 011352 311 RP-YFELTNAVRIGDLELFKSVAEKFSSTFSSDRT-NNLIVRLRHNVIRTGLRNI----SISY--SRISLADVAKKLRLD 382 (488)
Q Consensus 311 ~~-Y~~L~~Av~~Gdl~~f~~~l~~~~~~f~~D~~-~~Lv~rLr~~vir~~ir~i----~~~Y--srIsL~dIa~~L~l~ 382 (488)
.+ |.+|++||+.||+..|++++++|+..|.++|+ |.++++||.+|+|+++|++ ..+| ++||+++|+.+|+++
T Consensus 296 ~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~ 375 (455)
T 3t5v_B 296 IDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLS 375 (455)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhc
Confidence 77 99999999999999999999999999999999 9999999999999999999 4567 899999999999863
Q ss_pred C-----------------CCChHHHHHHHHHHHHcCCcceEeeCCCcEEEEcccCcccCCccccHHHHHHHHHHHHhhH
Q 011352 383 S-----------------ANPVADAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHN 444 (488)
Q Consensus 383 ~-----------------~~d~eeaE~ila~mI~dG~I~A~Id~~~G~v~~~~~~dv~s~~ep~~~l~~rI~~~l~l~~ 444 (488)
. .+|.+||||+||+||.+|+|+|+|+|++|+++++..++ ..+|||.+.++|..+..+|+
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlSK~~~---~~~pFP~l~~~~~~~f~~~~ 451 (455)
T 3t5v_B 376 IGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVKKTTM---IQEIVPPVNERITKMFPAHS 451 (455)
T ss_dssp HCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEECCCSC---GGGTSCCHHHHHHHHSCCCC
T ss_pred cCccccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEECCCCC---CCCCCCChHHHHHHHcCCCC
Confidence 1 14669999999999999999999999999887765544 35999999999999887776
No 3
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=100.00 E-value=4.6e-44 Score=341.75 Aligned_cols=194 Identities=19% Similarity=0.268 Sum_probs=176.6
Q ss_pred CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHhcCCCCCcchhcchhhhh
Q 011352 229 PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEK 308 (488)
Q Consensus 229 ~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~~~~~~~~alK~lIlv~LL~G~iP~~~ll~~~~l~~ 308 (488)
++++.+|++|+++|+||.|++++.+++|.+|+++|.+||++||..+.++++.++||+|||+||+|++|+++++.++
T Consensus 3 ~~~~~~~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~~~ll~~~---- 78 (203)
T 3t5x_A 3 HMKDDYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVELLKKY---- 78 (203)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEECHHHHHHT----
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCCHHHhhhC----
Confidence 5678899999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHHcchhhhcCcchHHHHHHHHHHHHHhHHHHHH--hhccccHHHHHHHhcCCC--C
Q 011352 309 ALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISI--SYSRISLADVAKKLRLDS--A 384 (488)
Q Consensus 309 ~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~~~f~~D~~~~Lv~rLr~~vir~~ir~i~~--~YsrIsL~dIa~~L~l~~--~ 384 (488)
.+.+|.+|++||++||+..|++++++|+..|.++|+|.+++++|.+|+|+++|+++. .|++||+++|+.+|++++ +
T Consensus 79 ~~~~y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~ 158 (203)
T 3t5x_A 79 HLMQFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVED 158 (203)
T ss_dssp TCGGGHHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTT
T ss_pred chhHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCC
Confidence 345899999999999999999999999999999999999999999999999999997 599999999999999864 2
Q ss_pred CChHHHHHHHHHHHHcCCcceEeeCCCcEEEEcccCcccCCccccHHHH
Q 011352 385 NPVADAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFN 433 (488)
Q Consensus 385 ~d~eeaE~ila~mI~dG~I~A~Id~~~G~v~~~~~~dv~s~~ep~~~l~ 433 (488)
+|.+||||+||+||.+|+|+|+|||++|+++. |+++|||.+.
T Consensus 159 ~~~~evE~ila~lI~~G~Ikg~I~~~~~~lVl-------sk~~pFP~l~ 200 (203)
T 3t5x_A 159 VDIDEVQCILANLIYMGHVKGYISHQHQKLVV-------SKQNPFPPLS 200 (203)
T ss_dssp CCHHHHHHHHHHHHHHTSSCEEEETTTTEEEE-------CSSCSSCCGG
T ss_pred CCHHHHHHHHHHHHHcCceEEEEcccccEEEE-------CCCCCCCCcc
Confidence 57799999999999999999999999998754 5779999875
No 4
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3e-26 Score=242.73 Aligned_cols=280 Identities=18% Similarity=0.130 Sum_probs=219.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC---CCCcc
Q 011352 157 VDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA---PRFEA 233 (488)
Q Consensus 157 ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~---~~pe~ 233 (488)
+...-|++...++..++-.|++.++...|....+.+....++....-+.....|.|+..+++..|..+++++ .+...
T Consensus 132 lE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~ 211 (445)
T 4b4t_P 132 VEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP 211 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC
Confidence 445567888888999999999999999999998877666666667777888999999999999999998886 23445
Q ss_pred CChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc--cchhhHHHHHHHHHHHHHhcCCCCCcchhcchhhh----
Q 011352 234 HSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV--AALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGME---- 307 (488)
Q Consensus 234 ~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~--~~~~~~~~alK~lIlv~LL~G~iP~~~ll~~~~l~---- 307 (488)
.++...+.|+.|+|++++++++|.+|+.+|..+|. +|. ........+++++|.+.+|.+..|.++.+.+....
T Consensus 212 ~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~-~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~ 290 (445)
T 4b4t_P 212 KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ-TDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNL 290 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSC
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-cccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccc
Confidence 66788999999999999999999999999999998 554 34566778889999988888888877544333222
Q ss_pred hhhhhHHHHHHHHhcCCHHHHHHHHHHcchhhhcCcc-------hHHHHHHHHHHHHHhHHHHHHhhccccHHHHHHHhc
Q 011352 308 KALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRT-------NNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLR 380 (488)
Q Consensus 308 ~~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~~~f~~D~~-------~~Lv~rLr~~vir~~ir~i~~~YsrIsL~dIa~~L~ 380 (488)
+.+.+|..|+++|.++++..|..+++.|+..+..|.. -..+..|+.+|+++++++++++|++|+++.||..|+
T Consensus 291 ~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~ 370 (445)
T 4b4t_P 291 KKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLD 370 (445)
T ss_dssp HHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHT
T ss_pred cccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhC
Confidence 4678899999999999999999999999887766654 356889999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHcCCcceEeeCCCcEEEEcccCcccCCccccHHHHHHHHHHHHhhH
Q 011352 381 LDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHN 444 (488)
Q Consensus 381 l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~G~v~~~~~~dv~s~~ep~~~l~~rI~~~l~l~~ 444 (488)
++. ++||..+++||.+|.|+|+|||+.|+|.|..+.+ .++.+..|+..|..++++.+
T Consensus 371 l~~----~evE~~ls~mI~~g~i~akIDq~~giV~F~~~~~---~~~~l~~W~~~i~~l~~~v~ 427 (445)
T 4b4t_P 371 LTE----SQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKN---SSQLLNEWSHNVDELLEHIE 427 (445)
T ss_dssp SCH----HHHHHHHHHHHHHTSSCCEEETTTTEEEC----------------------------
T ss_pred cCH----HHHHHHHHHHHHCCCEEEEEcCCCCEEEECCCCC---hHHHHHHHHHHHHHHHHHHH
Confidence 987 9999999999999999999999999999987653 46789999999999999887
No 5
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.94 E-value=3.6e-25 Score=230.26 Aligned_cols=248 Identities=17% Similarity=0.225 Sum_probs=209.9
Q ss_pred HHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHH
Q 011352 128 FLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNL 207 (488)
Q Consensus 128 ~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~ 207 (488)
.+++.|+|.+|.++...+.+.++..++. .+.-.+|...+.++-..+++..++..+.++..++...
T Consensus 108 l~~~~~~y~~a~~~i~~l~~~~~~~dd~---~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai------------ 172 (394)
T 3txn_A 108 LYFDTALYTEALALGAQLLRELKKLDDK---NLLVEVQLLESKTYHALSNLPKARAALTSARTTANAI------------ 172 (394)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTSSCT---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS------------
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhccccc---hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccC------------
Confidence 4458899999999999999999887654 2333456677777777889988888888875443221
Q ss_pred HHHHHHccCCHHHHHHHHhcCCCCccCChhHHHHHHHHHHHHHH-HhhcHHHHHHHHHHHHHhCCccchhhHHHHHHHHH
Q 011352 208 LLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRT-IQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAI 286 (488)
Q Consensus 208 llr~Yl~~~~~~~a~~li~~~~~pe~~~~~~~v~Y~YY~Gri~~-~~~dy~~A~~~L~~A~~~~P~~~~~~~~~alK~lI 286 (488)
..++.-+..+..++|++++ .+++|.+|+.+|..||++.+...+..+..++||++
T Consensus 173 -------------------------~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlv 227 (394)
T 3txn_A 173 -------------------------YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYML 227 (394)
T ss_dssp -------------------------CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred -------------------------CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence 1345667788999999999 89999999999999998777777888899999999
Q ss_pred HHHHhcCCCCCcc-hhcchhh----hhhhhhHHHHHHHHhcCCHHHHHHHHHHcchhhhcCcch-HHHHHHHHHHHHHhH
Q 011352 287 IVRLLLGEIPERT-VFMQKGM----EKALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTN-NLIVRLRHNVIRTGL 360 (488)
Q Consensus 287 lv~LL~G~iP~~~-ll~~~~l----~~~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~~~f~~D~~~-~Lv~rLr~~vir~~i 360 (488)
+|.|++|..++.. ++.++.. .+.+.+|.+|+.||..||+..|.++++.|+..|..|+.+ ..+..|+..++.+++
T Consensus 228 L~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L 307 (394)
T 3txn_A 228 LCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNL 307 (394)
T ss_dssp HHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHhccccccccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 9999999877753 3333321 256788999999999999999999999999999999876 458999999999999
Q ss_pred HHHHHhhccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCCcEEEEccc
Q 011352 361 RNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKET 419 (488)
Q Consensus 361 r~i~~~YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~G~v~~~~~ 419 (488)
+++..+|++|++++||..+|++. +++|..|++||.+|.|+|+|||.+|+|.+.++
T Consensus 308 ~~i~~pYsrIsl~~iA~~l~ls~----~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~ 362 (394)
T 3txn_A 308 CRIIEPYSRVQVAHVAESIQLPM----PQVEKKLSQMILDKKFSGILDQGEGVLIVFEE 362 (394)
T ss_dssp HHHHTTCSEEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSSCEEEETTTTEEEECCC
T ss_pred HHHhHhhceeeHHHHHHHHCcCH----HHHHHHHHHHHHCCCeeEEEcCCCCEEEECCC
Confidence 99999999999999999999965 99999999999999999999999999999875
No 6
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.1e-20 Score=193.28 Aligned_cols=283 Identities=14% Similarity=0.151 Sum_probs=229.3
Q ss_pred cccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHH
Q 011352 131 DKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLR 210 (488)
Q Consensus 131 d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr 210 (488)
..+++++|..+....+......++.. +.++++...+.++...|+..++...+..+++.+....++...+.+.+.+.+
T Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (434)
T 4b4t_Q 107 VPDSLDDQIFVCEKSIEFAKREKRVF---LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESK 183 (434)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHSSCCS---SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCccH---HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 45789999998888877766554442 345667778888888999999999999998887777777888888888999
Q ss_pred HHHccCCHHHHHHHHhcCC--CCc-cCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc----cchhhHHHHHH
Q 011352 211 NYLHYNLYDQAEKLRSKAP--RFE-AHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV----AALGFRVQCNK 283 (488)
Q Consensus 211 ~Yl~~~~~~~a~~li~~~~--~pe-~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~----~~~~~~~~alK 283 (488)
.|+..++++.|..+..++. .+. ..+......++.++|+++..+++|.+|+.+|..|++..+. ........+++
T Consensus 184 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 263 (434)
T 4b4t_Q 184 VYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLK 263 (434)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Confidence 9999999999999887752 111 2355678899999999999999999999999999985544 22456677888
Q ss_pred HHHHHHHhcCCCCCc-chhcch-----hhhhhhhhHHHHHHHHhcCCHHHHHHHHHHcchhhhcCcch-HHHHHHHHHHH
Q 011352 284 WAIIVRLLLGEIPER-TVFMQK-----GMEKALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTN-NLIVRLRHNVI 356 (488)
Q Consensus 284 ~lIlv~LL~G~iP~~-~ll~~~-----~l~~~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~~~f~~D~~~-~Lv~rLr~~vi 356 (488)
+.+++.++.+..... ..+... ...+....|..++.++..+++..|...+..|...+..|... ..+..+...++
T Consensus 264 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (434)
T 4b4t_Q 264 YMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLL 343 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 888888876553321 111111 11134567899999999999999999999999999988864 67889999999
Q ss_pred HHhHHHHHHhhccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCCcEEEEcccC
Q 011352 357 RTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKETG 420 (488)
Q Consensus 357 r~~ir~i~~~YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~G~v~~~~~~ 420 (488)
.++++++..+|++|+++++|..|+++. +++|..|++||.+|.|+|+||+.+|+|.+.+..
T Consensus 344 ~~~l~~~~~~y~~i~l~~la~~l~~~~----~~~E~~l~~lI~~~~i~a~id~~~g~v~~~~~~ 403 (434)
T 4b4t_Q 344 ESNLCKIIEPFECVEISHISKIIGLDT----QQVEGKLSQMILDKIFYGVLDQGNGWLYVYETP 403 (434)
T ss_dssp HHHHHHHHSSCSCEEHHHHHHHHTCCH----HHHHHHHHHHHHHTSSCCEEETTTTEEECC---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHhCcCH----HHHHHHHHHHHhCCCcceecccccCeEeeCCCc
Confidence 999999999999999999999999987 999999999999999999999999999987653
No 7
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.70 E-value=8.2e-16 Score=161.84 Aligned_cols=240 Identities=15% Similarity=0.110 Sum_probs=180.6
Q ss_pred hhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcCC--CCccCChhHHHHHHHHHHHHHH
Q 011352 174 LTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRT 251 (488)
Q Consensus 174 ~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~pe~~~~~~~v~Y~YY~Gri~~ 251 (488)
..|++.++...+.....-|+.. ....-+.-.++|.++..+++..+...+.++. +...-......+|..|.|++++
T Consensus 143 ~~Gd~~~A~~~~~~~~~~~~~~---~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l 219 (429)
T 4b4t_R 143 QIGDKDNAEKTLGKSLSKAIST---GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCL 219 (429)
T ss_dssp HHCCCTTHHHHHHHHHHHHTCC---CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGG
T ss_pred HcCCHHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHH
Confidence 4677777777777665444322 1123334457799999999999999988862 2223345667899999999999
Q ss_pred HhhcHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHhcCCCCCc--chhcchhh------hhhhhhHHHHHHHHhcC
Q 011352 252 IQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPER--TVFMQKGM------EKALRPYFELTNAVRIG 323 (488)
Q Consensus 252 ~~~dy~~A~~~L~~A~~~~P~~~~~~~~~alK~lIlv~LL~G~iP~~--~ll~~~~l------~~~l~~Y~~L~~Av~~G 323 (488)
..++|.+|..+|..++.........-...+.+|.++|.++...-.+. .++.++.. .+.+.++..++.++-.+
T Consensus 220 ~~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~ 299 (429)
T 4b4t_R 220 AVRNFKEAAKLLVDSLATFTSIELTSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYAS 299 (429)
T ss_dssp GTSCHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHT
T ss_pred HhChHHHHHHHHHHHhccCCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhc
Confidence 99999999999999998655455666777889999999986442221 13333322 23556778889999888
Q ss_pred CHHHHHH-HHHHcchhhhcCcch-HHHHHHHHHHHHHhHHHHHHhhccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcC
Q 011352 324 DLELFKS-VAEKFSSTFSSDRTN-NLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDG 401 (488)
Q Consensus 324 dl~~f~~-~l~~~~~~f~~D~~~-~Lv~rLr~~vir~~ir~i~~~YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG 401 (488)
+...|-+ .++.+...+..|... ..+..+...+..+++..+..+|++|+|+.+|..+|++. +++|..+++||.+|
T Consensus 300 ~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s~----~~~E~~L~~lI~~g 375 (429)
T 4b4t_R 300 DYASYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVSV----AFLDNDLGKFIPNK 375 (429)
T ss_dssp CHHHHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSCH----HHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCH----HHHHHHHHHHHHcC
Confidence 8888655 456666655555432 34777888888899999999999999999999999987 99999999999999
Q ss_pred CcceEeeCCCcEEEEcccC
Q 011352 402 AIDATVDHANGWMVSKETG 420 (488)
Q Consensus 402 ~I~A~Id~~~G~v~~~~~~ 420 (488)
.|+|+||+.+|+|.+.++.
T Consensus 376 ~l~akID~~~giv~~~~~d 394 (429)
T 4b4t_R 376 QLNCVIDRVNGIVETNRPD 394 (429)
T ss_dssp SSCEEEETTTTEEEECC--
T ss_pred CeEEEEcCCCCEEEECCCC
Confidence 9999999999999988653
No 8
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2.8e-16 Score=163.81 Aligned_cols=240 Identities=16% Similarity=0.134 Sum_probs=159.9
Q ss_pred ccHHHHHHHHHHHHHccCCHHHHHHHHhcCC----CCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc--
Q 011352 199 LGQETLLNLLLRNYLHYNLYDQAEKLRSKAP----RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV-- 272 (488)
Q Consensus 199 ~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~----~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~-- 272 (488)
.+...+...+.+.|+..|..+.|+.+++++. ..+..++.-...|++..|.++...++|..++.+...++..++.
T Consensus 124 ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~ 203 (393)
T 4b4t_O 124 DGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPST 203 (393)
T ss_dssp CSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSS
T ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccc
Confidence 4555666778999999999999999999862 2334566778888899999999999999999999998874443
Q ss_pred cchhhHHHHHHHHHHHHHhcCC-CCCc-chhcchhhh-----hhhhhHHHHHHHHhcCCHHHHHHHHHHcchhh--hcCc
Q 011352 273 AALGFRVQCNKWAIIVRLLLGE-IPER-TVFMQKGME-----KALRPYFELTNAVRIGDLELFKSVAEKFSSTF--SSDR 343 (488)
Q Consensus 273 ~~~~~~~~alK~lIlv~LL~G~-iP~~-~ll~~~~l~-----~~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~~~f--~~D~ 343 (488)
..+...+..+++.+++..|+|. ++.. .++..|.+. +...+|.+|.++|..||+..|.+.+..|...+ ...+
T Consensus 204 ~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~ 283 (393)
T 4b4t_O 204 SITLAERQQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQH 283 (393)
T ss_dssp SCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhh
Confidence 3356677777888888877654 6665 355555432 24567899999999999999999888775543 2222
Q ss_pred chHHHHHHHHHHHHHhHHHHHHhhccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCCcEEEEccc-Ccc
Q 011352 344 TNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKET-GDI 422 (488)
Q Consensus 344 ~~~Lv~rLr~~vir~~ir~i~~~YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~G~v~~~~~-~dv 422 (488)
.-.+.+++|...+-.++ ....|.+||+++|+..|+++. +|||.+|++||.+|.|+|+|||.+|+|.+.+. +.+
T Consensus 284 ~~~l~~kirll~l~~l~--~~~~~~~i~f~~ia~~l~i~~----~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR~ 357 (393)
T 4b4t_O 284 ESFLRQKICLMTLIETV--FVKNIRMLSFEDISKATHLPK----DNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRI 357 (393)
T ss_dssp HHHHHHHHHHHHHHHHH--CSSSCCCEEHHHHHHHHTCCH----HHHHHHHHHHHHHSCSSSCEETTTTEECC-------
T ss_pred HHHHHHHHHHHHHHHHh--ccCCCCcCcHHHHHHHhCcCH----HHHHHHHHHHHHcCCEEEEEcCCCCEEEEEeccCCC
Confidence 22344444433322211 123577899999999999976 99999999999999999999999999988763 233
Q ss_pred cCCcc---ccHHHHHHHHHHHHhhH
Q 011352 423 YSTNE---PQLAFNSRIAFCLNMHN 444 (488)
Q Consensus 423 ~s~~e---p~~~l~~rI~~~l~l~~ 444 (488)
++..+ ....+..+...|-++.+
T Consensus 358 ~~~~q~~~l~~~L~~W~~~v~~l~~ 382 (393)
T 4b4t_O 358 ISGDQITKMKDRLVEWNDQVEKLGK 382 (393)
T ss_dssp -------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33321 11234444444554444
No 9
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=99.49 E-value=2.9e-13 Score=131.00 Aligned_cols=182 Identities=14% Similarity=0.084 Sum_probs=147.4
Q ss_pred HHHHHHccCCHHHHHHHHhcC--------CCCccCChhH--HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc---cc
Q 011352 208 LLRNYLHYNLYDQAEKLRSKA--------PRFEAHSNQQ--FCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV---AA 274 (488)
Q Consensus 208 llr~Yl~~~~~~~a~~li~~~--------~~pe~~~~~~--~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~---~~ 274 (488)
-|+.++..++|+.|.+++++. .+|+..++++ .+|+-|+.|.+.+.+.++.++++.+...++..|. .+
T Consensus 13 ~L~~~~~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~~ 92 (229)
T 4b0z_A 13 HLADLYDRKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLVP 92 (229)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCCC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCCC
Confidence 367888999999999999873 3555555544 6899999999999999999999999999987776 34
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCcchhcchh-----hh--hhhhhHHHHHHHHhcCCHHHHHHHHHHcchhhhcCcchHH
Q 011352 275 LGFRVQCNKWAIIVRLLLGEIPERTVFMQKG-----ME--KALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTNNL 347 (488)
Q Consensus 275 ~~~~~~alK~lIlv~LL~G~iP~~~ll~~~~-----l~--~~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~~~f~~D~~~~L 347 (488)
++++.+++.|.+++.|.+|.+|+...+.... ++ +.+.++..+.+|+..||..+|-+...+....+ ...+
T Consensus 93 s~~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~~~----~~~~ 168 (229)
T 4b0z_A 93 SSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPE----FSYF 168 (229)
T ss_dssp CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCGG----GHHH
T ss_pred CccHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCccch----HHHH
Confidence 6799999999999999999999864332211 11 34567789999999999999999988764322 1246
Q ss_pred HHHHHHHHHHHhHHHHHHhhccccHHHHHHHhcCCCCCChHHHHHHHHH
Q 011352 348 IVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSK 396 (488)
Q Consensus 348 v~rLr~~vir~~ir~i~~~YsrIsL~dIa~~L~l~~~~d~eeaE~ila~ 396 (488)
+..+...+....++.++++|++||+++++..|+++++ +|++..+.+
T Consensus 169 ~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~---~e~~~f~~~ 214 (229)
T 4b0z_A 169 MKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENT---KETEKLAEE 214 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCH---HHHHHHHHH
Confidence 7777777778888999999999999999999999986 899998887
No 10
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=99.19 E-value=1.8e-11 Score=100.06 Aligned_cols=66 Identities=26% Similarity=0.408 Sum_probs=61.4
Q ss_pred HHHHHHHHHhHHHHHHhhccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCCcEEEEccc
Q 011352 350 RLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKET 419 (488)
Q Consensus 350 rLr~~vir~~ir~i~~~YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~G~v~~~~~ 419 (488)
.|+..+++++++.++++|++|+++.+|..++++. +++|.++++||.+|.|.|+|||.+|+|.|.+.
T Consensus 11 ~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls~----~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~ 76 (84)
T 1ufm_A 11 ILDRAVIEHNLLSASKLYNNITFEELGALLEIPA----AKAEKIASQMITEGRMNGFIDQIDGIVHFETR 76 (84)
T ss_dssp CCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCH----HHHHHHHHHHHHTTSSCEEEETTTTEEEECCS
T ss_pred HHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcCH----HHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCc
Confidence 3557789999999999999999999999999987 99999999999999999999999999999753
No 11
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.28 E-value=7.2e-05 Score=72.90 Aligned_cols=221 Identities=13% Similarity=0.059 Sum_probs=149.6
Q ss_pred HHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHH
Q 011352 129 LIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLL 208 (488)
Q Consensus 129 l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~l 208 (488)
+...|+|++|..+..+.+......+.. .-.+.+|.-...++...|+..++...+..+........+..+.+...+.+
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNE---DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345789999999988888765544322 23355567777888888999988888888877665556666666666777
Q ss_pred HHHHHcc-CCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCccch-h-hHHHHHH
Q 011352 209 LRNYLHY-NLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAAL-G-FRVQCNK 283 (488)
Q Consensus 209 lr~Yl~~-~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~~~-~-~~~~alK 283 (488)
-..|... ++++.|.....+. ..|..-........+.-.|.++...++|.+|..+|..++...|.... . ....++-
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 7899995 9999998877765 23333233344556778899999999999999999999997776432 1 2334555
Q ss_pred HHHHHHHhcCCCCCc-chhcc-----hhhh--hhhhhHHHHHHHHhcCCHHHHHHHHHHcchhhhcCcch-HHHHHHH
Q 011352 284 WAIIVRLLLGEIPER-TVFMQ-----KGME--KALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTN-NLIVRLR 352 (488)
Q Consensus 284 ~lIlv~LL~G~iP~~-~ll~~-----~~l~--~~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~~~f~~D~~~-~Lv~rLr 352 (488)
.+..|.+-+|+.... ..+.. |.+. ....-+..+..++..||...|.+++..|.....-|..+ .++.++.
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k 281 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIK 281 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 555666667875542 11211 1110 01223567888999999999999999997765556544 3344443
No 12
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.16 E-value=0.00014 Score=61.44 Aligned_cols=152 Identities=12% Similarity=-0.010 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhc
Q 011352 116 ELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLR 195 (488)
Q Consensus 116 ~~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~ 195 (488)
.....++......+...+++++|.......++.....+.. ...+.++...+.++-..++..++...+..+...+...
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCc---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 4455555666666677899999999998888776654322 2334567778888888999999988888887766555
Q ss_pred CCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC-CC-CccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Q 011352 196 HDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA-PR-FEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKA 270 (488)
Q Consensus 196 ~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~-~~-pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~ 270 (488)
.+..........+-..|+..++++.|...+.+. .. +..-........++..|.++...++|.+|..++..|+..+
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 555555555666778999999999999877764 11 2222345567778899999999999999999999999753
No 13
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=98.14 E-value=1.1e-05 Score=74.05 Aligned_cols=97 Identities=14% Similarity=0.204 Sum_probs=74.1
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHcchhhhcCcchHHHHHHHHHHHHHhHHHHHHhhccccHHHHHHHhcCCCCCChHH
Q 011352 310 LRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVAD 389 (488)
Q Consensus 310 l~~Y~~L~~Av~~Gdl~~f~~~l~~~~~~f~~D~~~~Lv~rLr~~vir~~ir~i~~~YsrIsL~dIa~~L~l~~~~d~ee 389 (488)
-.+|.+|.++|..|++..|.+.-+.+.. +. -.+..++|...+-.+. .....||+++|+..+++++. +|
T Consensus 59 ~~~~~~LL~iF~~G~~~~y~~~~~~~p~-L~----~~~~~KlrlLtL~sLa----~~~~~lsy~~I~~~l~i~~~---~e 126 (169)
T 3chm_A 59 DSVYLDLLRLFAHGTWGDYKCNATRLPH-LS----PDQILKLKQLTVLTLA----ESNKVLPYDTLMVELDVSNV---RE 126 (169)
T ss_dssp THHHHHHHHHHHHCCHHHHHHHGGGSCC-CC----HHHHHHHHHHHHHHHH----HHCSEEEHHHHHHHHTCCSH---HH
T ss_pred hhHHHHHHHHHhcCCHHHHHHhHHhCcc-hH----HHHHHHHHHHHHHHHH----HhCCCcCHHHHHHHhCCCCH---HH
Confidence 3579999999999999999985433321 11 2344445444332222 22578999999999999864 89
Q ss_pred HHHHHH-HHHHcCCcceEeeCCCcEEEEcc
Q 011352 390 AESIVS-KAIRDGAIDATVDHANGWMVSKE 418 (488)
Q Consensus 390 aE~ila-~mI~dG~I~A~Id~~~G~v~~~~ 418 (488)
+|.+|. ++|+.|.|+|+|||.++.+...+
T Consensus 127 vE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~ 156 (169)
T 3chm_A 127 LEDFLINECMYAGIVRGKLDQLKRCFEVPF 156 (169)
T ss_dssp HHHHHHHTHHHHTSEEEEEETTTTEEEEEE
T ss_pred HHHHHHHHHHHhCCeEEEEcCcCCEEEEEe
Confidence 999999 99999999999999999998876
No 14
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.11 E-value=0.00019 Score=71.91 Aligned_cols=179 Identities=18% Similarity=0.166 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhc
Q 011352 116 ELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLR 195 (488)
Q Consensus 116 ~~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~ 195 (488)
....+.+.+....++..|+|++|..+..+.++.....+.. ...+.+++..+.++...++...+...+..+...+...
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 176 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDR---IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH 176 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Confidence 5566777788888899999999999988887765554322 3456678888888989999999988888888766555
Q ss_pred CC-cccHHHHHHHHHHHHHccCCHHHHHHHHhcC-C-CCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 196 HD-ELGQETLLNLLLRNYLHYNLYDQAEKLRSKA-P-RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 196 ~~-~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~-~-~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
.+ ....+...+.+-.+|...|+++.|.....++ . .+..-.....+.-++..|.++...++|.+|..+|..|+..++.
T Consensus 177 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 177 EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 44 4555566667778999999999999977775 1 2323334566677889999999999999999999999984433
Q ss_pred cch-hhHHHHHHHHHHHHHhcCCCCC
Q 011352 273 AAL-GFRVQCNKWAIIVRLLLGEIPE 297 (488)
Q Consensus 273 ~~~-~~~~~alK~lIlv~LL~G~iP~ 297 (488)
... .....++-.+-.+-.-+|+...
T Consensus 257 ~~~~~~~~~~~~~l~~~~~~~g~~~~ 282 (383)
T 3ulq_A 257 SNILPSLPQAYFLITQIHYKLGKIDK 282 (383)
T ss_dssp TTCGGGHHHHHHHHHHHHHHTTCHHH
T ss_pred hccchhHHHHHHHHHHHHHHCCCHHH
Confidence 222 3334444444444444666443
No 15
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.02 E-value=0.00072 Score=64.13 Aligned_cols=175 Identities=15% Similarity=0.022 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhcc--------------------H
Q 011352 119 IYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGD--------------------L 178 (488)
Q Consensus 119 ~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~--------------------l 178 (488)
..++......+...|++++|.....+.++.....+.. ...+.++...+.++...++ +
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK---VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNAL 159 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc---hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHH
Confidence 4444445555667899999999999888877665332 2234456666777766777 7
Q ss_pred HHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcH
Q 011352 179 AEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEY 256 (488)
Q Consensus 179 ~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy 256 (488)
.++...+..+...+....+..........+-..|+..|+++.|...+... ..+..-.....+..++..|.++...++|
T Consensus 160 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 239 (338)
T 3ro2_A 160 QAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 239 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH
Confidence 77777777766555444555555556666778999999999999887775 1233334556677889999999999999
Q ss_pred HHHHHHHHHHHHhCCccc-hhhHHHHHHHHHHHHHhcCCCC
Q 011352 257 TDAKESLLQAARKAPVAA-LGFRVQCNKWAIIVRLLLGEIP 296 (488)
Q Consensus 257 ~~A~~~L~~A~~~~P~~~-~~~~~~alK~lIlv~LL~G~iP 296 (488)
.+|..+|..++..+|... ......++..+..+-.-+|+..
T Consensus 240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 280 (338)
T 3ro2_A 240 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYE 280 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHH
Confidence 999999999998665532 3333333333333333356544
No 16
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.01 E-value=0.0003 Score=62.80 Aligned_cols=152 Identities=14% Similarity=0.095 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcC-
Q 011352 118 EIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRH- 196 (488)
Q Consensus 118 e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~- 196 (488)
...++......+...|++++|..+....+......+.. ...+.++...+.++...++..++...+..+...+....
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 101 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH---TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE 101 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCc
Confidence 34444455555667899999999999988877665332 33455677788888889999999998888887766544
Q ss_pred CcccHHHHHHHHHHHHHccCCHHHHHHHHhcCC--CCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 197 DELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 197 ~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
+........+.+-..|+..|+++.|...+.... .+..-........++..|.++...++|.+|..+|..|+..+..
T Consensus 102 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 102 DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 333555666677789999999999988777641 1222233445666789999999999999999999999985443
No 17
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.96 E-value=0.00093 Score=65.88 Aligned_cols=176 Identities=16% Similarity=0.028 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhcc--------------------
Q 011352 118 EIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGD-------------------- 177 (488)
Q Consensus 118 e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~-------------------- 177 (488)
...++......+...|++++|..+..+.++.....+.. ...+.++...+.++...++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~ 162 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK---VGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA 162 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc---cchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH
Confidence 34444445555667899999999999888776655332 2334556777777777777
Q ss_pred HHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhc
Q 011352 178 LAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLE 255 (488)
Q Consensus 178 l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~d 255 (488)
+.++...+..+...+....+........+.+-..|+..|.++.|...+.+. ..+........+..++..|.++...++
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 777877777777666555556666666677788999999999999887775 223333445667788899999999999
Q ss_pred HHHHHHHHHHHHHhCCccc-hhhHHHHHHHHHHHHHhcCCCC
Q 011352 256 YTDAKESLLQAARKAPVAA-LGFRVQCNKWAIIVRLLLGEIP 296 (488)
Q Consensus 256 y~~A~~~L~~A~~~~P~~~-~~~~~~alK~lIlv~LL~G~iP 296 (488)
|.+|..+|..|+..+|... ......++..+.-+-...|+..
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 284 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYE 284 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHH
Confidence 9999999999998665532 2233333333333333356544
No 18
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.95 E-value=0.0004 Score=68.55 Aligned_cols=174 Identities=12% Similarity=-0.001 Sum_probs=127.0
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCccc
Q 011352 121 CYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELG 200 (488)
Q Consensus 121 ~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~ 200 (488)
++......+...|++++|..+....++........ ...+.++...+.++...++..++...+..+........+...
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 265 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 265 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchH
Confidence 33444445566789999999998888776655322 233455777888888899999999888888876665556666
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc-chhh
Q 011352 201 QETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA-ALGF 277 (488)
Q Consensus 201 ~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~-~~~~ 277 (488)
.....+.+-..|+..|+++.|...+... ..+..-........++..|.++...++|.+|..+|..|+..++.. ....
T Consensus 266 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 345 (406)
T 3sf4_A 266 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSG 345 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcc
Confidence 6666777888999999999999887775 122233355667788899999999999999999999999866553 2445
Q ss_pred HHHHHHHHHHHHHhcCCCCC
Q 011352 278 RVQCNKWAIIVRLLLGEIPE 297 (488)
Q Consensus 278 ~~~alK~lIlv~LL~G~iP~ 297 (488)
...++..+.-+...+|....
T Consensus 346 ~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 346 ELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTSC
T ss_pred hhHHHHHHHHHHHHhhHhHH
Confidence 55555555555555777654
No 19
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.94 E-value=0.0011 Score=62.70 Aligned_cols=176 Identities=14% Similarity=0.011 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCc
Q 011352 119 IYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDE 198 (488)
Q Consensus 119 ~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~ 198 (488)
..++......+...|++++|..+....+......+.. ...+.+++..+.++...++..++...+..+...+....+.
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 119 (338)
T 3ro2_A 43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ---LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK 119 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccccc---HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc
Confidence 3344444555667899999999988888776654322 3345567777888888999999998888888766655666
Q ss_pred ccHHHHHHHHHHHHHccCC--------------------HHHHHHHHhcC-C-CCccCChhHHHHHHHHHHHHHHHhhcH
Q 011352 199 LGQETLLNLLLRNYLHYNL--------------------YDQAEKLRSKA-P-RFEAHSNQQFCRYLFYLGKIRTIQLEY 256 (488)
Q Consensus 199 ~~~~~l~n~llr~Yl~~~~--------------------~~~a~~li~~~-~-~pe~~~~~~~v~Y~YY~Gri~~~~~dy 256 (488)
.......+.+-..|...|. ++.|....... . .+..-........++..|.++...++|
T Consensus 120 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 199 (338)
T 3ro2_A 120 VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF 199 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCH
Confidence 6666666677788999999 88888776654 1 111223455677888999999999999
Q ss_pred HHHHHHHHHHHHhCCcc-chhhHHHHHHHHHHHHHhcCCCCC
Q 011352 257 TDAKESLLQAARKAPVA-ALGFRVQCNKWAIIVRLLLGEIPE 297 (488)
Q Consensus 257 ~~A~~~L~~A~~~~P~~-~~~~~~~alK~lIlv~LL~G~iP~ 297 (488)
.+|..++..++..+|.. .......++-.+..+-...|+...
T Consensus 200 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 241 (338)
T 3ro2_A 200 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 241 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999866652 233333344444444444676543
No 20
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.91 E-value=0.001 Score=66.31 Aligned_cols=177 Identities=16% Similarity=0.039 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhcc-----------------HH
Q 011352 117 LEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGD-----------------LA 179 (488)
Q Consensus 117 ~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~-----------------l~ 179 (488)
....++......+...|++++|..+..+.+......+.. ...+.++...+.++...++ +.
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~ 200 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDR---LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALT 200 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhch---HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHH
Confidence 334444555555667799999999998888776654322 3334556777777777777 77
Q ss_pred HHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHH
Q 011352 180 EIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYT 257 (488)
Q Consensus 180 ~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~ 257 (488)
.+...+..+...+....+........+.+-..|+..|+++.|...+... ..+...........++..|.++...++|.
T Consensus 201 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 280 (411)
T 4a1s_A 201 RAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFE 280 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHH
Confidence 7777777776555444555555666667788999999999999987775 22333344556677889999999999999
Q ss_pred HHHHHHHHHHHhCCccc-hhhHHHHHHHHHHHHHhcCCCC
Q 011352 258 DAKESLLQAARKAPVAA-LGFRVQCNKWAIIVRLLLGEIP 296 (488)
Q Consensus 258 ~A~~~L~~A~~~~P~~~-~~~~~~alK~lIlv~LL~G~iP 296 (488)
+|..+|..|+..+|... ......++..+.-+-..+|+..
T Consensus 281 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 320 (411)
T 4a1s_A 281 DAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFN 320 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 99999999998766532 2233333433333333356544
No 21
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.88 E-value=0.0029 Score=63.09 Aligned_cols=175 Identities=15% Similarity=0.028 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcc
Q 011352 120 YCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDEL 199 (488)
Q Consensus 120 ~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~ 199 (488)
.++......+...|++++|..+..+.++.....+. +...+.+++..+.++...++..++...+..+...+....+..
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 163 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND---RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRL 163 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC---chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchH
Confidence 34444445555678999999988888777655432 234455677788888888999888888888876655545555
Q ss_pred cHHHHHHHHHHHHHccCC-----------------HHHHHHHHhcC-C-CCccCChhHHHHHHHHHHHHHHHhhcHHHHH
Q 011352 200 GQETLLNLLLRNYLHYNL-----------------YDQAEKLRSKA-P-RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAK 260 (488)
Q Consensus 200 ~~~~l~n~llr~Yl~~~~-----------------~~~a~~li~~~-~-~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~ 260 (488)
......+.+-..|...++ ++.|.....+. . .+..-........++..|.++...++|.+|.
T Consensus 164 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 243 (411)
T 4a1s_A 164 SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAI 243 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 556566667788888999 88888776654 1 1122234556777889999999999999999
Q ss_pred HHHHHHHHhCCcc-chhhHHHHHHHHHHHHHhcCCCCC
Q 011352 261 ESLLQAARKAPVA-ALGFRVQCNKWAIIVRLLLGEIPE 297 (488)
Q Consensus 261 ~~L~~A~~~~P~~-~~~~~~~alK~lIlv~LL~G~iP~ 297 (488)
.+|..|+..+|.. .......++..+..+-+.+|+...
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 244 EHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence 9999999876652 233333344444444444566443
No 22
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.88 E-value=0.00059 Score=68.37 Aligned_cols=178 Identities=15% Similarity=0.083 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhc
Q 011352 116 ELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLR 195 (488)
Q Consensus 116 ~~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~ 195 (488)
....+.+.....+.+..|+|++|..+..+.++.+..... +...+.+++..+.++-..++...+...+..+.......
T Consensus 98 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 174 (378)
T 3q15_A 98 LLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD---DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC---hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence 456677788888889999999999998887766555432 24556678888888888999988888888887665443
Q ss_pred CC-cccHHHHHHHHHHHHHccCCHHHHHHHHhcC-CC-CccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 196 HD-ELGQETLLNLLLRNYLHYNLYDQAEKLRSKA-PR-FEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 196 ~~-~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~-~~-pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
.+ ....+...+.+-.+|...|+++.|.....++ .. +..-........++..|.++..+++|.+|..+|..|+..+..
T Consensus 175 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 175 PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 33 3345555666778999999999999877664 21 222233456677889999999999999999999999984333
Q ss_pred cchhhHHHHHHHHHHHHHhcCCCC
Q 011352 273 AALGFRVQCNKWAIIVRLLLGEIP 296 (488)
Q Consensus 273 ~~~~~~~~alK~lIlv~LL~G~iP 296 (488)
...+....++-.+-.+-.-+|+..
T Consensus 255 ~~~~~~~~~~~~la~~~~~~g~~~ 278 (378)
T 3q15_A 255 KVPDLLPKVLFGLSWTLCKAGQTQ 278 (378)
T ss_dssp HCGGGHHHHHHHHHHHHHHTTCHH
T ss_pred hCChhHHHHHHHHHHHHHHCCCHH
Confidence 222222344444444333356544
No 23
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.81 E-value=0.0012 Score=64.56 Aligned_cols=203 Identities=11% Similarity=-0.022 Sum_probs=132.7
Q ss_pred HHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHH
Q 011352 129 LIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLL 208 (488)
Q Consensus 129 l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~l 208 (488)
+...++|++|..+..+.+......+.. .-.+.+|.-...++...++..++...+..+........+....+...+.+
T Consensus 46 ~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 46 FKNAKQLEQAKDAYLQEAEAHANNRSL---FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345689999999988888775554322 23345566667777778888888877777776655555555556566667
Q ss_pred HHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCccc-hhhHHHHHHHH
Q 011352 209 LRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAA-LGFRVQCNKWA 285 (488)
Q Consensus 209 lr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~~-~~~~~~alK~l 285 (488)
-.+|.. ++++.|.....+. .+|..-........++-.|.++...++|.+|..+|..|+..+|... ......++..+
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 778888 9999998877764 2232223344566778899999999999999999999998766533 22223344445
Q ss_pred HHHHHhcCCCCCc-chhc----chhhh--hhhhhHHHHHHHHhcCCHHHHHHHHHHcc
Q 011352 286 IIVRLLLGEIPER-TVFM----QKGME--KALRPYFELTNAVRIGDLELFKSVAEKFS 336 (488)
Q Consensus 286 Ilv~LL~G~iP~~-~ll~----~~~l~--~~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~ 336 (488)
..+.+-+|+...- ..|. .+... ........+..++..||...|.. +.++.
T Consensus 202 g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e~~~l~~l~~~~~~~d~~~~~~-~~~~~ 258 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYDEQDEEQLLR-VCRSP 258 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTSTTSTTSHHHHHHHHHHHHHHTTCHHHHHH-HTTSH
T ss_pred HHHHHHcCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHhcCHHHHHH-HHhCc
Confidence 5555556764431 1111 11110 11223557888899999998888 44443
No 24
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.69 E-value=0.0041 Score=62.06 Aligned_cols=153 Identities=8% Similarity=-0.031 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCC
Q 011352 118 EIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHD 197 (488)
Q Consensus 118 e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~ 197 (488)
...++......+...|++++|.....+.++.....+. ...-.+.++...+.++...++..++...+..+...+....+
T Consensus 142 ~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 219 (383)
T 3ulq_A 142 KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA--YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ 219 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST--THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence 3344444455556679999999999998888776532 12334566788888999999999999999999877766666
Q ss_pred cccHHHHHHHHHHHHHccCCHHHHHHHHhcC-CCCc-cCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 198 ELGQETLLNLLLRNYLHYNLYDQAEKLRSKA-PRFE-AHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 198 ~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~-~~pe-~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
....+...+.+-..|...|+++.|.....++ ...+ .-.......-++..|.++...++|.+|..+|..|+..++.
T Consensus 220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK 296 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 6777767777888999999999999877775 2111 1121334667889999999999999999999999986554
No 25
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.57 E-value=0.0023 Score=56.87 Aligned_cols=134 Identities=13% Similarity=0.083 Sum_probs=95.0
Q ss_pred HHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHH
Q 011352 129 LIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLL 208 (488)
Q Consensus 129 l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~l 208 (488)
++..|+|++|.+....+ .. +.. ..+.++...+.++-..++..++...+..+...+....+........+.+
T Consensus 2 ~~~~g~~~~A~~~~~~~----~~-~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 72 (203)
T 3gw4_A 2 AFEAHDYALAERQAQAL----LA-HPA----TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQV 72 (203)
T ss_dssp -----CHHHHHHHHHHH----HT-STT----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHh----cC-ChH----HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 46788999988843333 11 111 2244567777778888999999988888887776666666777777778
Q ss_pred HHHHHccCCHHHHHHHHhcC-CCCccC--ChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC
Q 011352 209 LRNYLHYNLYDQAEKLRSKA-PRFEAH--SNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP 271 (488)
Q Consensus 209 lr~Yl~~~~~~~a~~li~~~-~~pe~~--~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P 271 (488)
-..|...|+++.|...+... ...... ........++..|.++...++|.+|..+|..|+..++
T Consensus 73 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 138 (203)
T 3gw4_A 73 GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ 138 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 88999999999999877764 221112 2335677788999999999999999999999997543
No 26
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.55 E-value=0.013 Score=58.48 Aligned_cols=153 Identities=11% Similarity=-0.064 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcc
Q 011352 120 YCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDEL 199 (488)
Q Consensus 120 ~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~ 199 (488)
.++.-........|++.+|.....+.++.....+.. ..-.+.++...+.++...++..++...+..+...+....+..
T Consensus 142 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 219 (378)
T 3q15_A 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY--SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR 219 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 333344444556789999999999888877654321 123455678888889899999999999999888776666666
Q ss_pred cHHHHHHHHHHHHHccCCHHHHHHHHhcC-CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCccc
Q 011352 200 GQETLLNLLLRNYLHYNLYDQAEKLRSKA-PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAA 274 (488)
Q Consensus 200 ~~~~l~n~llr~Yl~~~~~~~a~~li~~~-~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~~ 274 (488)
..+...+.+-.+|...|+++.|...+.++ ...+.........-++..|.++...++|.+|..++..|+..++...
T Consensus 220 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 295 (378)
T 3q15_A 220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS 295 (378)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC
Confidence 66666677888999999999999877775 2111111122266788999999999999999999999999777643
No 27
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.45 E-value=0.0029 Score=53.08 Aligned_cols=111 Identities=15% Similarity=0.096 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhH
Q 011352 161 AARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQ 238 (488)
Q Consensus 161 ~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~ 238 (488)
.+.++...+.++-..++..++...+..+...+....+........+.+-..|+..++++.|....... ..+..-....
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 35556777777778889998888888887766655666666666777888999999999999987775 1222334455
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC
Q 011352 239 FCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP 271 (488)
Q Consensus 239 ~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P 271 (488)
....++..|.++...++|.+|..++..|+..++
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 120 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 120 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 677888999999999999999999999997543
No 28
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.39 E-value=0.014 Score=55.03 Aligned_cols=152 Identities=13% Similarity=0.058 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhc--CC
Q 011352 120 YCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLR--HD 197 (488)
Q Consensus 120 ~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~--~~ 197 (488)
.++......+...|++++|..+....+......... .+...+.+++..+.++...++..++...+..+....... .+
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 70 TMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK-DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 333444445566799999999988888776543100 012234456777888888899998888888877654322 22
Q ss_pred cccHHHHHHHHHHHHHccCCHHHHHHHHhcC-CC-Ccc--CChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 198 ELGQETLLNLLLRNYLHYNLYDQAEKLRSKA-PR-FEA--HSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 198 ~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~-~~-pe~--~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
........+.+-..|...|+++.|...+.+. .. ... -........++..|.++...++|.+|..+|..++..+|.
T Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3334455566778999999999999887775 11 001 113455677889999999999999999999999986543
No 29
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.37 E-value=0.011 Score=57.00 Aligned_cols=143 Identities=12% Similarity=0.029 Sum_probs=97.0
Q ss_pred HHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHH-HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHH
Q 011352 126 LIFLIDKKRYNEAKACSSASIARLKNMNRRTVDV-LAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETL 204 (488)
Q Consensus 126 ~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~-l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l 204 (488)
+..++..++|++|..+.....+... ...+. ..+..+...+.++-..++..++...+..++.......+..+.+.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEE----YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhcccc----CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 5567888999999988777655211 11111 111111123333434557788877777777644344555556666
Q ss_pred HHHHHHHHHccCCHHHHHHHHhcCC--CCcc-CChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 205 LNLLLRNYLHYNLYDQAEKLRSKAP--RFEA-HSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 205 ~n~llr~Yl~~~~~~~a~~li~~~~--~pe~-~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
.+.+-..|...|.|+.|.....++- .... ......+..+|..|.++..+++|.+|..++..|+..++.
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 7778889999999999998777751 1111 245677888999999999999999999999999986544
No 30
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.35 E-value=0.012 Score=56.99 Aligned_cols=144 Identities=11% Similarity=-0.011 Sum_probs=100.6
Q ss_pred HHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHhhhcCCcccHHHH
Q 011352 126 LIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELT-GDLAEIRGNLLALHRIATLRHDELGQETL 204 (488)
Q Consensus 126 ~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~-~~l~~~r~~L~~~~rta~~~~~~~~~~~l 204 (488)
...+...|++++|..+..+.++......+. ...+.++.-...+++.. ++..++...+..+........+.......
T Consensus 84 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~---~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~ 160 (292)
T 1qqe_A 84 YKCFKSGGNSVNAVDSLENAIQIFTHRGQF---RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKC 160 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHH
Confidence 334456789999999998888775544322 23345566777888885 99998888887777655433333344445
Q ss_pred HHHHHHHHHccCCHHHHHHHHhcC--CCCccCCh-hHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 205 LNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSN-QQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 205 ~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~-~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
.+.+-..|+..|+|+.|.....+. ..|..... -....+++..|.++...++|.+|..+|..++...|.
T Consensus 161 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 566778899999999999887775 23333221 134456778899999999999999999999986665
No 31
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.34 E-value=0.0055 Score=59.12 Aligned_cols=142 Identities=13% Similarity=0.058 Sum_probs=98.5
Q ss_pred HHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHH
Q 011352 126 LIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLL 205 (488)
Q Consensus 126 ~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~ 205 (488)
...++..++|++|.++....++..... ......+..+++.+.++...++..++...+..++..+....+.++.+...
T Consensus 82 ~~~~~~~~~y~~A~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYH---PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHhccccCC---hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 345567899999998877665542221 11112223345566666677788888888877776554445666666677
Q ss_pred HHHHHHHHccCCHHHHHHHHhcCC-CCcc--CChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Q 011352 206 NLLLRNYLHYNLYDQAEKLRSKAP-RFEA--HSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKA 270 (488)
Q Consensus 206 n~llr~Yl~~~~~~~a~~li~~~~-~pe~--~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~ 270 (488)
+.+-..|...|+|+.|.....++- ..+. -.....+..++..|.++..+++|.+|..++..|+..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 778889999999999998877752 1111 1122234678899999999999999999999999753
No 32
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.32 E-value=0.0064 Score=57.38 Aligned_cols=150 Identities=17% Similarity=0.122 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhc-
Q 011352 119 IYCYLLVLIFLIDKKRYNEAKACSSASIARLKNM--NRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLR- 195 (488)
Q Consensus 119 ~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~--~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~- 195 (488)
..++......+...|++++|..+....++..... ... ...+.+++..+.++...++..++...+..+...+...
T Consensus 111 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 111 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH---PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 3334444455567899999999988888775443 111 2233446777888888899999888888887654333
Q ss_pred -CCcccHHHHHHHHHHHHHccCCHHHHHHHHhcCC--CCc----------------------------------------
Q 011352 196 -HDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFE---------------------------------------- 232 (488)
Q Consensus 196 -~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~pe---------------------------------------- 232 (488)
.+........+.+-..|+..|+++.|...+.... .|+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 2233344455667789999999999988766531 000
Q ss_pred ---cCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC
Q 011352 233 ---AHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP 271 (488)
Q Consensus 233 ---~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P 271 (488)
..........++..|.++...++|.+|..+|..|+...|
T Consensus 268 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 268 KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred hhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 002355677788999999999999999999999997544
No 33
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.0045 Score=62.22 Aligned_cols=153 Identities=11% Similarity=-0.015 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhc
Q 011352 116 ELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLR 195 (488)
Q Consensus 116 ~~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~ 195 (488)
+.+-.+.-|..+ +...|++++|.++...+.+....++.. ...+-+......++...+....+......+...+...
T Consensus 53 ~~~~al~~l~~~-y~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 128 (434)
T 4b4t_Q 53 EQETSILELGQL-YVTMGAKDKLREFIPHSTEYMMQFAKS---KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE 128 (434)
T ss_dssp HHHHHHHHHHHH-HHHHTCHHHHHHHHHHTHHHHHTSCHH---HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHccch---HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence 344333333333 356799999999888887776665432 1122223344455555677777777777777666666
Q ss_pred CCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 196 HDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 196 ~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
.+....+.+.+.+-+.|+..|.|..|..++... ......+....+.++...|+++...+||.+|..++..|....+.
T Consensus 129 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 207 (434)
T 4b4t_Q 129 KRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS 207 (434)
T ss_dssp SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence 777778888888899999999999999988774 12223345678899999999999999999999999999875554
No 34
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.32 E-value=0.006 Score=59.52 Aligned_cols=142 Identities=13% Similarity=0.006 Sum_probs=102.6
Q ss_pred HHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHH
Q 011352 127 IFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLN 206 (488)
Q Consensus 127 ~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n 206 (488)
..+...++|++|..+..+.+......++. ...+.++.-...+++. ++..++...+..+........+........+
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~---~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~ 159 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTP---DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIG 159 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCH---HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 33445689999999988888776544322 1234556677778877 8888888888777765544444444555566
Q ss_pred HHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 207 LLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 207 ~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
.+-..|...++|+.|.....+. ..|+.-.......+++-.|.++...++|.+|..+|..++ ..|..
T Consensus 160 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 160 KASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 6778999999999999887775 223322234456677888999999999999999999999 77863
No 35
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.27 E-value=0.012 Score=57.99 Aligned_cols=174 Identities=12% Similarity=-0.045 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcc
Q 011352 120 YCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDEL 199 (488)
Q Consensus 120 ~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~ 199 (488)
-+..+.....+..+++++|.......+......+ ....+.++.....++-..|+...+...+..+...+....+..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 90 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGW----FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH 90 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCc----hhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH
Confidence 3445555566678999999998877765432111 112233455556667678899998888888877665555566
Q ss_pred cHHHHHHHHHHHHHccCCHHHHHHHHhcC-C-CCccCC--hhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCccch
Q 011352 200 GQETLLNLLLRNYLHYNLYDQAEKLRSKA-P-RFEAHS--NQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAAL 275 (488)
Q Consensus 200 ~~~~l~n~llr~Yl~~~~~~~a~~li~~~-~-~pe~~~--~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~~~ 275 (488)
+.....+.+-..|+..|.++.|....... . .+.... .......++..|.++...++|.+|..++..++..+|....
T Consensus 91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 170 (373)
T 1hz4_A 91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 170 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence 66655666778899999999998877664 1 111111 1234556677999999999999999999999998887443
Q ss_pred hhHHHHHHHHHHHHHhcCCCCC
Q 011352 276 GFRVQCNKWAIIVRLLLGEIPE 297 (488)
Q Consensus 276 ~~~~~alK~lIlv~LL~G~iP~ 297 (488)
.....++..+..+.+..|+...
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~ 192 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDN 192 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHH
Confidence 3333444444444455677654
No 36
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.25 E-value=0.018 Score=53.02 Aligned_cols=143 Identities=11% Similarity=0.004 Sum_probs=99.0
Q ss_pred CCHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhh
Q 011352 114 LPELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIAT 193 (488)
Q Consensus 114 ~p~~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~ 193 (488)
-|....-++......+...+++++|..+...+++. +... +.+++..+.++...++..++...+..+.....
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 102 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEI----DPSS-----ADAHAALAVVFQTEMEPKLADEEYRKALASDS 102 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH----CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCh-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 46554555566666677889999999987777653 1111 22356667777778898888887777764321
Q ss_pred hcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcCCCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 194 LRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 194 ~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
.. ......+...|+..++++.|...+.+..-... .......++..|.++...++|.+|..+|..++...|..
T Consensus 103 ----~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 174 (252)
T 2ho1_A 103 ----RN--ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTL--YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ 174 (252)
T ss_dssp ----TC--HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTT--CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred ----Cc--HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCcc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc
Confidence 11 22334566788999999999998777532101 12234567789999999999999999999999977754
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.043 Score=49.97 Aligned_cols=143 Identities=10% Similarity=-0.023 Sum_probs=99.1
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcC-Ccc
Q 011352 121 CYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRH-DEL 199 (488)
Q Consensus 121 ~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~-~~~ 199 (488)
.+......++..|+|++|..+....++.- .+ +.+|+..+.++...++..++...+..+........ +..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~--------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 76 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KD--------ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK 76 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CC--------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--cc--------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH
Confidence 34445556667899999999988877653 11 22356677777788898888888877765443221 222
Q ss_pred cHHHHHHHHHHHHHccCCHHHHHHHHhcC-C-CCccC--------------------ChhHHHHHHHHHHHHHHHhhcHH
Q 011352 200 GQETLLNLLLRNYLHYNLYDQAEKLRSKA-P-RFEAH--------------------SNQQFCRYLFYLGKIRTIQLEYT 257 (488)
Q Consensus 200 ~~~~l~n~llr~Yl~~~~~~~a~~li~~~-~-~pe~~--------------------~~~~~v~Y~YY~Gri~~~~~dy~ 257 (488)
........+-..|...+.++.|...+.+. . .|... ........++..|.++...++|.
T Consensus 77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 22344556778899999999998877764 1 11100 22345567788999999999999
Q ss_pred HHHHHHHHHHHhCCcc
Q 011352 258 DAKESLLQAARKAPVA 273 (488)
Q Consensus 258 ~A~~~L~~A~~~~P~~ 273 (488)
+|..+|..++...|..
T Consensus 157 ~A~~~~~~a~~~~~~~ 172 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPED 172 (258)
T ss_dssp HHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcCccc
Confidence 9999999999877764
No 38
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.21 E-value=0.02 Score=52.83 Aligned_cols=151 Identities=14% Similarity=0.048 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhc--CC
Q 011352 120 YCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLR--HD 197 (488)
Q Consensus 120 ~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~--~~ 197 (488)
.++......+...|++++|..+....+........ ..+...+.++...+.++...++..++...+..+...+... .+
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLG-KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 33344445556789999999999888877654310 0112334457777888888999999988888887654332 11
Q ss_pred cccHHHHHHHHHHHHHccCCHHHHHHHHhcC-CCC-c--cCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC
Q 011352 198 ELGQETLLNLLLRNYLHYNLYDQAEKLRSKA-PRF-E--AHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP 271 (488)
Q Consensus 198 ~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~-~~p-e--~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P 271 (488)
........+.+-..|+..|+++.|...+.+. ... . .-........++..|.++...++|.+|..+|..++..+|
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 2233444556778999999999999877764 110 0 011334567788999999999999999999999998544
No 39
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.19 E-value=0.009 Score=55.21 Aligned_cols=147 Identities=18% Similarity=0.113 Sum_probs=102.5
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhc--CCc
Q 011352 121 CYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLR--HDE 198 (488)
Q Consensus 121 ~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~--~~~ 198 (488)
+.......+...|++++|..+..+.++........ .+...+.+++..+.++...++..++...+..+...+... .+.
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK-FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 33344445567899999999999888776544111 012234456777788888899999988888887654332 223
Q ss_pred ccHHHHHHHHHHHHHccCCHHHHHHHHhcCC-C------C----cc----------------------------------
Q 011352 199 LGQETLLNLLLRNYLHYNLYDQAEKLRSKAP-R------F----EA---------------------------------- 233 (488)
Q Consensus 199 ~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~-~------p----e~---------------------------------- 233 (488)
.........+-..|+..|+++.|...+.... . + ..
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence 3334455567789999999999988766531 0 0 00
Q ss_pred CChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 011352 234 HSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAAR 268 (488)
Q Consensus 234 ~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~ 268 (488)
.........++.+|.++...++|.+|..+|..|++
T Consensus 246 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 02356677888999999999999999999999986
No 40
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.17 E-value=0.0082 Score=54.04 Aligned_cols=146 Identities=17% Similarity=0.106 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCC
Q 011352 118 EIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHD 197 (488)
Q Consensus 118 e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~ 197 (488)
+...+.-....++..|+|++|..+...++ +. .+.+|+..+.++...++..++...+..+.+.. .
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~------~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~ 68 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ------DP------HSRICFNIGCMYTILKNMTEAEKAFTRSINRD----K 68 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS------SC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc------CC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----c
Confidence 33444455556677899999998866653 11 13456777788888899988887777766432 1
Q ss_pred cccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccC----------ChhHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 011352 198 ELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAH----------SNQQFCRYLFYLGKIRTIQLEYTDAKESLLQ 265 (488)
Q Consensus 198 ~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~----------~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~ 265 (488)
.. ....+.+-.+|+..++++.|...+.+. ..|... ........++..|.++...++|.+|..+|..
T Consensus 69 ~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 69 HL--AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp TC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cc--hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 11 223344667899999999999877764 233322 2223456688999999999999999999999
Q ss_pred HHHhCCccchhhHHHH
Q 011352 266 AARKAPVAALGFRVQC 281 (488)
Q Consensus 266 A~~~~P~~~~~~~~~a 281 (488)
|+...|....+....+
T Consensus 147 al~~~p~~~~~~~~~a 162 (213)
T 1hh8_A 147 ATSMKSEPRHSKIDKA 162 (213)
T ss_dssp HHTTCCSGGGGHHHHH
T ss_pred HHHcCcccccchHHHH
Confidence 9998887544444443
No 41
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.15 E-value=0.052 Score=53.44 Aligned_cols=153 Identities=14% Similarity=-0.028 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhc
Q 011352 116 ELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLR 195 (488)
Q Consensus 116 ~~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~ 195 (488)
+....+.......+...|++++|.......+......... ...+.+++..+.++-..|++.++...+..++..+...
T Consensus 50 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 126 (373)
T 1hz4_A 50 YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW---HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ 126 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 3344444444555667899999999888877765543221 2223345666777778899999888888887665443
Q ss_pred CCc--ccHHHHHHHHHHHHHccCCHHHHHHHHhcC-C-CCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC
Q 011352 196 HDE--LGQETLLNLLLRNYLHYNLYDQAEKLRSKA-P-RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP 271 (488)
Q Consensus 196 ~~~--~~~~~l~n~llr~Yl~~~~~~~a~~li~~~-~-~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P 271 (488)
+.. .......+.+-..|...|+++.|...+... . .+. ......+..++..|+++...++|.+|..+|..+....+
T Consensus 127 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 205 (373)
T 1hz4_A 127 HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS-YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG 205 (373)
T ss_dssp TCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-SCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred ccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc-cCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 333 334444555667899999999999887764 1 222 12223456677899999999999999999999987544
Q ss_pred c
Q 011352 272 V 272 (488)
Q Consensus 272 ~ 272 (488)
.
T Consensus 206 ~ 206 (373)
T 1hz4_A 206 N 206 (373)
T ss_dssp T
T ss_pred c
Confidence 4
No 42
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.08 E-value=0.0067 Score=58.48 Aligned_cols=142 Identities=10% Similarity=-0.035 Sum_probs=101.6
Q ss_pred HHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhc-CCcccHHH
Q 011352 125 VLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLR-HDELGQET 203 (488)
Q Consensus 125 ~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~-~~~~~~~~ 203 (488)
........+++++|.....++++.....+. +...+.++...+.++...++..++...+..++..+... .+....+.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~---~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGID---VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVK 197 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSC---TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhccccc---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 344455678999999988887763222211 12344457777888888899998888888887655433 34555555
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhcC-C-CCccCChhHHHHHHHHHHHHHHHhh-cHHHHHHHHHHHHHh
Q 011352 204 LLNLLLRNYLHYNLYDQAEKLRSKA-P-RFEAHSNQQFCRYLFYLGKIRTIQL-EYTDAKESLLQAARK 269 (488)
Q Consensus 204 l~n~llr~Yl~~~~~~~a~~li~~~-~-~pe~~~~~~~v~Y~YY~Gri~~~~~-dy~~A~~~L~~A~~~ 269 (488)
+.+.+-..|++.++|+.|...+.+. . .+..-........++..|.++...+ +|.+|..+|..|+.-
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 6667888999999999999987775 1 1222222345777899999999999 589999999999974
No 43
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.07 E-value=0.0062 Score=58.77 Aligned_cols=144 Identities=10% Similarity=-0.042 Sum_probs=99.2
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHH
Q 011352 123 LLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQE 202 (488)
Q Consensus 123 ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~ 202 (488)
..........+++++|..+..+.+......+.. + ..+.+|+..+.++...++..++...+..++..+....+.....
T Consensus 119 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~-~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~ 195 (293)
T 2qfc_A 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV--Y-QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD 195 (293)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT--T-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch--H-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccch
Confidence 334455667789999999877766543222111 1 1345677788888889999999888888876544333322222
Q ss_pred -HHHHHHHHHHHccCCHHHHHHHHhcCC-C-CccCChhHHHHHHHHHHHHHHHhhcHHHH-HHHHHHHHHh
Q 011352 203 -TLLNLLLRNYLHYNLYDQAEKLRSKAP-R-FEAHSNQQFCRYLFYLGKIRTIQLEYTDA-KESLLQAARK 269 (488)
Q Consensus 203 -~l~n~llr~Yl~~~~~~~a~~li~~~~-~-pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A-~~~L~~A~~~ 269 (488)
.+.+.+-..|+..|+|+.|...+.+.- . +..-........++..|.++...++|.+| ..+|..|+.-
T Consensus 196 ~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 196 VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 445567789999999999999877741 1 11111223466789999999999999999 8889999864
No 44
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.059 Score=49.06 Aligned_cols=142 Identities=13% Similarity=0.031 Sum_probs=96.6
Q ss_pred HHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhh---------
Q 011352 124 LVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATL--------- 194 (488)
Q Consensus 124 l~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~--------- 194 (488)
.....+...|++++|..+....++.-..... .+...+.+|+..+.++...++..++...+..+.+....
T Consensus 43 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 120 (258)
T 3uq3_A 43 NRAAAEYEKGEYETAISTLNDAVEQGREMRA--DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRN 120 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCccccc--chHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhH
Confidence 3344456678999999998888776544311 12233455777788888888888877777666642100
Q ss_pred -----------cCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHH
Q 011352 195 -----------RHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKE 261 (488)
Q Consensus 195 -----------~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~ 261 (488)
.............+-..|+..|+++.|...+.+. ..|.. ...++..|.++...++|.+|..
T Consensus 121 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~ 194 (258)
T 3uq3_A 121 AEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIA 194 (258)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHhCCHHHHHH
Confidence 0011122233445667899999999999987775 22321 3567889999999999999999
Q ss_pred HHHHHHHhCCcc
Q 011352 262 SLLQAARKAPVA 273 (488)
Q Consensus 262 ~L~~A~~~~P~~ 273 (488)
+|..++...|..
T Consensus 195 ~~~~al~~~~~~ 206 (258)
T 3uq3_A 195 DCNKAIEKDPNF 206 (258)
T ss_dssp HHHHHHHHCTTC
T ss_pred HHHHHHHhCHHH
Confidence 999999876653
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.93 E-value=0.053 Score=48.21 Aligned_cols=137 Identities=10% Similarity=-0.034 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCc
Q 011352 119 IYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDE 198 (488)
Q Consensus 119 ~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~ 198 (488)
...+......++..|++++|.++....++.- ... +.+++..+.++...++..++...+..+..... .
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----~ 74 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD----PKN-----ELAWLVRAEIYQYLKVNDKAQESFRQALSIKP----D 74 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----T
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC----ccc-----hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC----C
Confidence 3344455556677899999999877766532 111 22356667777788888888877766654321 1
Q ss_pred ccHHHHHHHHHHHHHcc-CCHHHHHHHHhcC-CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 199 LGQETLLNLLLRNYLHY-NLYDQAEKLRSKA-PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 199 ~~~~~l~n~llr~Yl~~-~~~~~a~~li~~~-~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
. ......+...|+.. ++++.|...+.+. ..|.. ......++..|.++...++|.+|..+|..++...|..
T Consensus 75 ~--~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 146 (225)
T 2vq2_A 75 S--AEINNNYGWFLCGRLNRPAESMAYFDKALADPTY---PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF 146 (225)
T ss_dssp C--HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTC---SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred C--hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCC---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 1 22334466788999 9999999877764 22211 1234556889999999999999999999999876653
No 46
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.88 E-value=0.029 Score=51.26 Aligned_cols=136 Identities=10% Similarity=-0.042 Sum_probs=96.2
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHH
Q 011352 123 LLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQE 202 (488)
Q Consensus 123 ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~ 202 (488)
......++..|+|++|..+..+.++.-.. ... .++++.+.++...++..++...+..+.+.. . ...
T Consensus 11 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~---~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----p--~~~ 76 (228)
T 4i17_A 11 KNEGNDALNAKNYAVAFEKYSEYLKLTNN---QDS-----VTAYNCGVCADNIKKYKEAADYFDIAIKKN----Y--NLA 76 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTT---CCH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----C--SHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhccCC---CCc-----HHHHHHHHHHHHhhcHHHHHHHHHHHHHhC----c--chH
Confidence 34455667889999999998877654321 111 235667788888899888877766665321 1 122
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHhcC--CCCcc-CChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 203 TLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEA-HSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 203 ~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~-~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
.....+-.+|...|+++.|...+++. ..|.. ......+..++..|.++...++|.+|..+|..|+...|.
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 33445667899999999999988775 23432 123345678899999999999999999999999986665
No 47
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.87 E-value=0.031 Score=52.43 Aligned_cols=142 Identities=11% Similarity=-0.011 Sum_probs=95.8
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHH
Q 011352 123 LLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQE 202 (488)
Q Consensus 123 ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~ 202 (488)
......++..|+|++|......+++.- ... ...+.+++..+.++...++..++...+..+.+... .+.. ..
T Consensus 19 ~~~a~~~~~~g~~~~A~~~~~~~l~~~----p~~--~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p-~~~~--~~ 89 (261)
T 3qky_A 19 FERAMEFYNQGKYDRAIEYFKAVFTYG----RTH--EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ-IDPR--VP 89 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHGGGC----SCS--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTT--HH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC----CCC--cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC-CCch--hH
Confidence 444556678899999998877665421 111 12234578888888899999998887777765321 1111 11
Q ss_pred HHHHHHHHHHHc--------cCCHHHHHHHHhcC--CCCccCChhHHH-----------HHHHHHHHHHHHhhcHHHHHH
Q 011352 203 TLLNLLLRNYLH--------YNLYDQAEKLRSKA--PRFEAHSNQQFC-----------RYLFYLGKIRTIQLEYTDAKE 261 (488)
Q Consensus 203 ~l~n~llr~Yl~--------~~~~~~a~~li~~~--~~pe~~~~~~~v-----------~Y~YY~Gri~~~~~dy~~A~~ 261 (488)
.....+-.+|+. .+.++.|...+.+. .+|.+....... ...|..|.++...++|.+|..
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 222234457777 99999999887775 355543222222 223899999999999999999
Q ss_pred HHHHHHHhCCcc
Q 011352 262 SLLQAARKAPVA 273 (488)
Q Consensus 262 ~L~~A~~~~P~~ 273 (488)
+|..++...|.+
T Consensus 170 ~~~~~l~~~p~~ 181 (261)
T 3qky_A 170 TYEAVFDAYPDT 181 (261)
T ss_dssp HHHHHHHHCTTS
T ss_pred HHHHHHHHCCCC
Confidence 999999987763
No 48
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=96.83 E-value=0.043 Score=53.62 Aligned_cols=63 Identities=13% Similarity=0.064 Sum_probs=36.8
Q ss_pred HHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 207 LLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 207 ~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
.+-..|...|.++.|...+.+. ..|... ....++..|.++...++|.+|..+|..++...|..
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 246 (365)
T 4eqf_A 182 RMSKSPVDSSVLEGVKELYLEAAHQNGDMI----DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED 246 (365)
T ss_dssp -------CCHHHHHHHHHHHHHHHHSCSSC----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhCcCcc----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3445566666666666555543 122211 12346678888888888888888888888877764
No 49
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.77 E-value=0.028 Score=48.22 Aligned_cols=136 Identities=18% Similarity=0.079 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcC
Q 011352 117 LEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRH 196 (488)
Q Consensus 117 ~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~ 196 (488)
...-.+......++..|++++|..+...+++. +... +.+++..+.++...++..++...+..+.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--- 73 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA----DAFD-----VDVALHLGIAYVKTGAVDRGTELLERSLADAP--- 73 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT----TSCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CccC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---
Confidence 33444455555667788999988775554321 1111 23356666777778888888777766654321
Q ss_pred CcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 197 DELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 197 ~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
.. ......+-..|+..++++.|...+.+. ..|.. ...++..|.++...++|.+|..+|..++...|..
T Consensus 74 -~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 74 -DN--VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN------FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp -TC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred -CC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence 11 222344567788999999998877764 22321 3456788999999999999999999999876653
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.74 E-value=0.051 Score=49.87 Aligned_cols=129 Identities=14% Similarity=0.014 Sum_probs=89.9
Q ss_pred HHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHH
Q 011352 125 VLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETL 204 (488)
Q Consensus 125 ~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l 204 (488)
....+...|++++|.++...+++.- ... +.+++..+.++...++..++...+..+.. ..........
T Consensus 77 la~~~~~~~~~~~A~~~~~~a~~~~----~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~ 143 (252)
T 2ho1_A 77 LAVVFQTEMEPKLADEEYRKALASD----SRN-----ARVLNNYGGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRV 143 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC----TTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC----cCc-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHh----CccCcccHHH
Confidence 3344566789999999887776541 111 12355666777778888888877766654 1112223344
Q ss_pred HHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 205 LNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 205 ~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
...+-..|+..|+++.|...+.+. ..|.. ...++..|.++...++|.+|..+|..++...|.
T Consensus 144 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 207 (252)
T 2ho1_A 144 FENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ------PSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 455677899999999999987774 22321 345689999999999999999999999986664
No 51
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.62 E-value=0.12 Score=47.59 Aligned_cols=161 Identities=10% Similarity=-0.045 Sum_probs=97.2
Q ss_pred HHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcc--cHHH
Q 011352 126 LIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDEL--GQET 203 (488)
Q Consensus 126 ~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~--~~~~ 203 (488)
...++..|+|++|......+++..... .....+++....++...++..++...+..+.+.. +.+... ..+.
T Consensus 11 a~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~ 83 (225)
T 2yhc_A 11 AQQKLQDGNWRQAITQLEALDNRYPFG------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTS------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHH
Confidence 455677899999999888777542211 1122346677778888899988877776665432 112111 1111
Q ss_pred HHHHHH--------------HHHHccCCHHHHHHHHhcC--CCCccCChh-----------HHHHHHHHHHHHHHHhhcH
Q 011352 204 LLNLLL--------------RNYLHYNLYDQAEKLRSKA--PRFEAHSNQ-----------QFCRYLFYLGKIRTIQLEY 256 (488)
Q Consensus 204 l~n~ll--------------r~Yl~~~~~~~a~~li~~~--~~pe~~~~~-----------~~v~Y~YY~Gri~~~~~dy 256 (488)
+..+.+ ..+...+.++.|...+.+. .+|++.... ....+.+..|.++..+++|
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 222111 1233467888888877764 456543221 2234558899999999999
Q ss_pred HHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHhcCCC
Q 011352 257 TDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEI 295 (488)
Q Consensus 257 ~~A~~~L~~A~~~~P~~~~~~~~~alK~lIlv~LL~G~i 295 (488)
.+|...|..++...|.+. ....++..+..+-.-+|+.
T Consensus 164 ~~A~~~~~~~l~~~p~~~--~~~~a~~~l~~~~~~~g~~ 200 (225)
T 2yhc_A 164 VAVVNRVEGMLRDYPDTQ--ATRDALPLMENAYRQMQMN 200 (225)
T ss_dssp HHHHHHHHHHHHHSTTSH--HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHCcCCC--ccHHHHHHHHHHHHHcCCc
Confidence 999999999999888743 2334444444444334543
No 52
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.56 E-value=0.12 Score=48.22 Aligned_cols=137 Identities=14% Similarity=0.015 Sum_probs=90.1
Q ss_pred HHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh--------hccHHHHHHHHHHHHHHhhhcCCc
Q 011352 127 IFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYEL--------TGDLAEIRGNLLALHRIATLRHDE 198 (488)
Q Consensus 127 ~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~--------~~~l~~~r~~L~~~~rta~~~~~~ 198 (488)
..++..|+|++|......+++.-... . ....+++..+.++.. .++..++...+..+.+.... +.
T Consensus 60 ~~~~~~~~~~~A~~~~~~~l~~~p~~-~-----~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~- 131 (261)
T 3qky_A 60 RAYYQNKEYLLAASEYERFIQIYQID-P-----RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HE- 131 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC-T-----THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CT-
T ss_pred HHHHHhCcHHHHHHHHHHHHHHCCCC-c-----hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-ch-
Confidence 33456789999999877776542211 1 112336777777777 77777777777666543211 11
Q ss_pred ccHHHH-------------HHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHh----------
Q 011352 199 LGQETL-------------LNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQ---------- 253 (488)
Q Consensus 199 ~~~~~l-------------~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~---------- 253 (488)
...... ...+-..|++.|+++.|....++. .+|.+. .....+|..|.++...
T Consensus 132 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~a~~~l~~~~~~~g~~~~~~~~~ 208 (261)
T 3qky_A 132 LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTP---WADDALVGAMRAYIAYAEQSVRARQP 208 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST---THHHHHHHHHHHHHHHHHTSCGGGHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCc---hHHHHHHHHHHHHHHhcccchhhccc
Confidence 111000 023456899999999999887774 345432 2345578999999876
Q ss_pred hcHHHHHHHHHHHHHhCCccc
Q 011352 254 LEYTDAKESLLQAARKAPVAA 274 (488)
Q Consensus 254 ~dy~~A~~~L~~A~~~~P~~~ 274 (488)
++|.+|..+|..++...|.+.
T Consensus 209 ~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 209 ERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHHHHHHCTTCT
T ss_pred chHHHHHHHHHHHHHHCCCCh
Confidence 999999999999999888753
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.54 E-value=0.013 Score=53.25 Aligned_cols=139 Identities=14% Similarity=0.059 Sum_probs=75.9
Q ss_pred CCHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhh
Q 011352 114 LPELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIAT 193 (488)
Q Consensus 114 ~p~~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~ 193 (488)
.|......+......++..|++++|..+...+++. +... +.+++..+.++...++..++...+..+.....
T Consensus 18 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 88 (243)
T 2q7f_A 18 GSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE----NKED-----AIPYINFANLLSSVNELERALAFYDKALELDS 88 (243)
T ss_dssp ------------------------CCTTHHHHHTT----CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CchhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh----Cccc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 33444455555566667788999888876666541 1111 22355666667778888877776666654321
Q ss_pred hcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC
Q 011352 194 LRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP 271 (488)
Q Consensus 194 ~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P 271 (488)
. .......+-..|...|+++.|...+.+. ..|.. ...++..|.++...++|.+|..+|..++...|
T Consensus 89 ----~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 156 (243)
T 2q7f_A 89 ----S--AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN------GDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156 (243)
T ss_dssp ----T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred ----c--chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 1 1233345667888899999998877764 22321 23467789999999999999999999998766
Q ss_pred cc
Q 011352 272 VA 273 (488)
Q Consensus 272 ~~ 273 (488)
..
T Consensus 157 ~~ 158 (243)
T 2q7f_A 157 ND 158 (243)
T ss_dssp TC
T ss_pred cc
Confidence 53
No 54
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=96.52 E-value=0.072 Score=50.44 Aligned_cols=133 Identities=17% Similarity=0.073 Sum_probs=86.5
Q ss_pred HHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHH
Q 011352 126 LIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLL 205 (488)
Q Consensus 126 ~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~ 205 (488)
...+...|++++|..+....++..... ..++++.+.++...++..++...+..+..... . .....
T Consensus 132 ~~~~~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~----~--~~~~~ 196 (330)
T 3hym_B 132 GHSFAVESEHDQAMAAYFTAAQLMKGC---------HLPMLYIGLEYGLTNNSKLAERFFSQALSIAP----E--DPFVM 196 (330)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHTTTC---------SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT----T--CHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhcccc---------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC----C--ChHHH
Confidence 334456688888888776665442211 11244566666678888887776666653221 1 12334
Q ss_pred HHHHHHHHccCCHHHHHHHHhcC-----CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 206 NLLLRNYLHYNLYDQAEKLRSKA-----PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 206 n~llr~Yl~~~~~~~a~~li~~~-----~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
+.+-..|+..++++.|...+... ..+...........++..|.++...++|.+|..+|..++...|..
T Consensus 197 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 269 (330)
T 3hym_B 197 HEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN 269 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccc
Confidence 55667889999999998877664 111222223334567789999999999999999999999876653
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.48 E-value=0.14 Score=45.33 Aligned_cols=127 Identities=9% Similarity=-0.103 Sum_probs=88.8
Q ss_pred HHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHhhhcCCcccHHHH
Q 011352 126 LIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELT-GDLAEIRGNLLALHRIATLRHDELGQETL 204 (488)
Q Consensus 126 ~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~-~~l~~~r~~L~~~~rta~~~~~~~~~~~l 204 (488)
...+...|++++|..+....++.- ... +.+++..+.++... ++..++...+..+.. ..........
T Consensus 49 ~~~~~~~~~~~~A~~~~~~a~~~~----~~~-----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~ 115 (225)
T 2vq2_A 49 AEIYQYLKVNDKAQESFRQALSIK----PDS-----AEINNNYGWFLCGRLNRPAESMAYFDKALA----DPTYPTPYIA 115 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC----TTC-----HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----STTCSCHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHhC----CCC-----hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----CcCCcchHHH
Confidence 334456789999998877766531 111 12345666677778 888888877777654 1112222344
Q ss_pred HHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC
Q 011352 205 LNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP 271 (488)
Q Consensus 205 ~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P 271 (488)
...+-..|...|+++.|...+.+. ..|.. ...++..|.++...++|.+|..+|..++...|
T Consensus 116 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 116 NLNKGICSAKQGQFGLAEAYLKRSLAAQPQF------PPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 455677899999999999887764 22321 34578899999999999999999999998766
No 56
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.48 E-value=0.062 Score=45.93 Aligned_cols=128 Identities=10% Similarity=-0.075 Sum_probs=88.2
Q ss_pred HHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHH
Q 011352 124 LVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQET 203 (488)
Q Consensus 124 l~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~ 203 (488)
.....+...|++++|..+...+++. +... +.+++..+.++...++..++...+..+..... .. ..
T Consensus 47 ~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----~~--~~ 111 (186)
T 3as5_A 47 HLGIAYVKTGAVDRGTELLERSLAD----APDN-----VKVATVLGLTYVQVQKYDLAVPLLIKVAEANP----IN--FN 111 (186)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----TC--HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc----CCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc----Hh--HH
Confidence 3344455789999999887777654 1111 12345556666677888888877776654321 11 22
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 204 LLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 204 l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
....+-..|...|+++.|...+... ..|.. ...++..|.++...++|.+|..++..++...|.
T Consensus 112 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 112 VRFRLGVALDNLGRFDEAIDSFKIALGLRPNE------GKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 3345667889999999999887764 22322 345789999999999999999999999986665
No 57
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=96.45 E-value=0.13 Score=41.04 Aligned_cols=126 Identities=19% Similarity=0.165 Sum_probs=84.2
Q ss_pred HHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHH
Q 011352 126 LIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLL 205 (488)
Q Consensus 126 ~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~ 205 (488)
...+...|++++|.......++. +... ..+++..+.++...++..++...+..+..... .. ....
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~----~~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----~~--~~~~ 72 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALEL----DPRS-----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP----RS--AEAW 72 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH----CTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----TC--HHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHc----CCcc-----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC----Cc--hHHH
Confidence 34455678999999887776543 1121 12244556666667888888777666654321 11 1233
Q ss_pred HHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 206 NLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 206 n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
..+...|...++++.|...+... ..|.. ...++..|.++...+++.+|..+|..++...|.
T Consensus 73 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 73 YNLGNAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 45667899999999999887764 12321 234567899999999999999999999986653
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.37 E-value=0.092 Score=45.96 Aligned_cols=127 Identities=11% Similarity=-0.027 Sum_probs=84.8
Q ss_pred HHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHH
Q 011352 126 LIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLL 205 (488)
Q Consensus 126 ~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~ 205 (488)
-..+...|+|++|.++..++++. +... +.+|+..+.++...++..++...+..+.... ... ....
T Consensus 12 G~~~~~~g~~~~A~~~~~~al~~----~p~~-----~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~----~~~--~~~~ 76 (184)
T 3vtx_A 12 GDKKRTKGDFDGAIRAYKKVLKA----DPNN-----VETLLKLGKTYMDIGLPNDAIESLKKFVVLD----TTS--AEAY 76 (184)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH----CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CCC--HHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh----CCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----chh--HHHH
Confidence 33445679999999988777643 2221 2235666777778888887776666554322 111 1222
Q ss_pred HHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 206 NLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 206 n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
..+-..+...+.++.|.....+. ..|.. ...++..|.++...++|.+|..+|..++...|..
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~ 140 (184)
T 3vtx_A 77 YILGSANFMIDEKQAAIDALQRAIALNTVY------ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF 140 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh
Confidence 33456778889999988877664 12321 2346788999999999999999999999876654
No 59
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.25 E-value=0.23 Score=39.59 Aligned_cols=100 Identities=9% Similarity=-0.127 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHH
Q 011352 162 ARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQF 239 (488)
Q Consensus 162 ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~ 239 (488)
+.+++..+.++...++...+...+..+..... .. ......+-..|+..++++.|...+.+. ..|..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------ 79 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNP----AN--AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY------ 79 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC----CC--HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC------
Confidence 34456666666677888877776666654321 11 223344667889999999999877764 22322
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 240 CRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 240 v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
...++..|.++...++|.+|..+|..++...|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 113 (131)
T 2vyi_A 80 SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN 113 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc
Confidence 3457899999999999999999999999977754
No 60
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.25 E-value=0.16 Score=45.85 Aligned_cols=129 Identities=12% Similarity=0.023 Sum_probs=89.7
Q ss_pred HHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHH
Q 011352 124 LVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQET 203 (488)
Q Consensus 124 l~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~ 203 (488)
.....+...+++++|..+...+++.- ... +.+++..+.++...++..++...+..+...... . ..
T Consensus 62 ~la~~~~~~~~~~~A~~~~~~~~~~~----~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----~--~~ 126 (243)
T 2q7f_A 62 NFANLLSSVNELERALAFYDKALELD----SSA-----ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME----N--GD 126 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC----TTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC----S--HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC----Ccc-----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----C--HH
Confidence 33444556789999999877766441 111 233556666777788888888877777654311 1 12
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 204 LLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 204 l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
....+-..|+..|+++.|...+.+. ..|.. ...++..|.++...++|.+|..+|..++...|..
T Consensus 127 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 192 (243)
T 2q7f_A 127 LFYMLGTVLVKLEQPKLALPYLQRAVELNEND------TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH 192 (243)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 3344667899999999999887774 12321 3357889999999999999999999999876653
No 61
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=96.18 E-value=0.27 Score=47.53 Aligned_cols=90 Identities=11% Similarity=0.027 Sum_probs=58.2
Q ss_pred HHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHH
Q 011352 124 LVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQET 203 (488)
Q Consensus 124 l~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~ 203 (488)
.....++..|++++|..+...+++. +... +.+|+..+.++...++..++...+..+..... . ...
T Consensus 69 ~~~~~~~~~g~~~~A~~~~~~al~~----~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~----~--~~~ 133 (368)
T 1fch_A 69 EEGLRRLQEGDLPNAVLLFEAAVQQ----DPKH-----MEAWQYLGTTQAENEQELLAISALRRCLELKP----D--NQT 133 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS----CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----T--CHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh----CCCC-----HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC----C--CHH
Confidence 3445566789999999887777643 1121 22356667777788888888777766654321 1 122
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhcC
Q 011352 204 LLNLLLRNYLHYNLYDQAEKLRSKA 228 (488)
Q Consensus 204 l~n~llr~Yl~~~~~~~a~~li~~~ 228 (488)
....+-..|...|+++.|...+.+.
T Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~ 158 (368)
T 1fch_A 134 ALMALAVSFTNESLQRQACEILRDW 158 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344567888889999888877663
No 62
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=96.16 E-value=0.083 Score=49.99 Aligned_cols=134 Identities=13% Similarity=-0.006 Sum_probs=92.0
Q ss_pred HHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCc---ccH
Q 011352 125 VLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDE---LGQ 201 (488)
Q Consensus 125 ~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~---~~~ 201 (488)
....+...|++++|..+...+++. +... +.+++..+.++...++..++...+..+........+. ...
T Consensus 165 l~~~~~~~~~~~~A~~~~~~al~~----~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 235 (330)
T 3hym_B 165 IGLEYGLTNNSKLAERFFSQALSI----APED-----PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKW 235 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT----CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh----CCCC-----hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHH
Confidence 344455678999988876665432 2221 2235566677778899998888888877654322221 112
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 202 ETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 202 ~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
......+-..|...|.++.|...+.+. ..|.. ...++..|.++...++|.+|..+|..++...|..
T Consensus 236 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 303 (330)
T 3hym_B 236 EPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN------ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD 303 (330)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccc------hHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc
Confidence 234445667899999999999987775 22322 2347789999999999999999999999877764
No 63
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=96.06 E-value=0.3 Score=47.49 Aligned_cols=137 Identities=14% Similarity=-0.008 Sum_probs=79.9
Q ss_pred HHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHH--HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHH
Q 011352 126 LIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVL--AARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQET 203 (488)
Q Consensus 126 ~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l--~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~ 203 (488)
...+...|++++|.......++.-... ......+ .+.++.....++...++..++...+..+.... .......
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~ 214 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKY-KYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN----GDMIDPD 214 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHH-HCC-------------------CCHHHHHHHHHHHHHHHHS----CSSCCHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccc-hHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC----cCccCHH
Confidence 334456788888888877776542211 1111111 11122233445555667777776666665432 1111223
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 204 LLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 204 l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
..+.+-..|...|+++.|...+.+. ..|.. ...++..|.++...++|.+|..+|..|+...|..
T Consensus 215 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 280 (365)
T 4eqf_A 215 LQTGLGVLFHLSGEFNRAIDAFNAALTVRPED------YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF 280 (365)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 3445667888999999999887774 22322 3356789999999999999999999999877764
No 64
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=95.96 E-value=0.14 Score=40.99 Aligned_cols=104 Identities=13% Similarity=0.003 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCcc-CChhHH
Q 011352 163 RLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEA-HSNQQF 239 (488)
Q Consensus 163 k~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~-~~~~~~ 239 (488)
.+|+..+.++...++...+...+..+...... . ......+-..|+..++++.|...+.+. ..|.. ......
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 78 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPT----N--MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----C--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc----c--HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHH
Confidence 34555666666778888887777766543211 1 223344667889999999999877774 12322 222233
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 240 CRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 240 v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
...++..|.++...++|.+|..+|..++...|.
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 667889999999999999999999999987663
No 65
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=95.91 E-value=0.14 Score=44.31 Aligned_cols=101 Identities=13% Similarity=-0.025 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHH
Q 011352 163 RLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFC 240 (488)
Q Consensus 163 k~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v 240 (488)
..|+....++...++..++...+..+.+.... . ..+...+-.+|+..++++.|...+.+. ..|. ..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~ 79 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPA----N--PIYLSNRAAAYSASGQHEKAAEDAELATVVDPK------YS 79 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc----C--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CH
Confidence 34556666666788888887777776653311 1 223344567899999999999877775 2232 24
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCccch
Q 011352 241 RYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAAL 275 (488)
Q Consensus 241 ~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~~~ 275 (488)
..+|..|.++...++|.+|..+|..++...|....
T Consensus 80 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 80 KAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 56889999999999999999999999998887443
No 66
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=95.88 E-value=0.11 Score=49.46 Aligned_cols=130 Identities=12% Similarity=0.056 Sum_probs=58.0
Q ss_pred HHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHH
Q 011352 128 FLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNL 207 (488)
Q Consensus 128 ~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~ 207 (488)
.+...|++++|.++...+++.- .... .+++..+.++...++..++...+..+.... ... ......
T Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~--~~~~~~ 193 (359)
T 3ieg_A 129 DAFDGADYTAAITFLDKILEVC----VWDA-----ELRELRAECFIKEGEPRKAISDLKAASKLK----SDN--TEAFYK 193 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC----TTCH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----SCC--HHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC----CCch-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCC--HHHHHH
Confidence 3445666776666665554321 1111 123344444445555555554444443211 111 112223
Q ss_pred HHHHHHccCCHHHHHHHHhcC--CCCccCC------hhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 208 LLRNYLHYNLYDQAEKLRSKA--PRFEAHS------NQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 208 llr~Yl~~~~~~~a~~li~~~--~~pe~~~------~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
+-..|...|+++.|...+.+. ..|.... ....+.-..-.|.++...++|.+|..+|..++...|.
T Consensus 194 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 266 (359)
T 3ieg_A 194 ISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 266 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 444555556666665555443 1222111 1111122334455555666666666666666655554
No 67
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=95.87 E-value=0.36 Score=43.79 Aligned_cols=142 Identities=13% Similarity=0.048 Sum_probs=84.9
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHH---------HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhh
Q 011352 123 LLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVD---------VLAARLYFYYSLCYELTGDLAEIRGNLLALHRIAT 193 (488)
Q Consensus 123 ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld---------~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~ 193 (488)
+-....++..|+|++|..+..++++.-... -..| .+...+++-.+.++...++..++...+..+....
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 84 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALNIDR--TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA- 84 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHH--HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
Confidence 334566778899999999887776531110 0000 1111122227777778888888877776665432
Q ss_pred hcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCC----hh-------------------------HHHHH
Q 011352 194 LRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHS----NQ-------------------------QFCRY 242 (488)
Q Consensus 194 ~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~----~~-------------------------~~v~Y 242 (488)
.... .....+-..|+..|+++.|.....+. ..|.+.. .. ..---
T Consensus 85 ---p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 159 (208)
T 3urz_A 85 ---PNNV--DCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA 159 (208)
T ss_dssp ---TTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHH
T ss_pred ---CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHH
Confidence 1111 12223455778888888888876664 1232100 00 00012
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 243 LFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 243 ~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
+|..|..+...++|.+|..+|..|++..|.
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 356788888899999999999999987776
No 68
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=95.86 E-value=1.3 Score=44.02 Aligned_cols=188 Identities=13% Similarity=0.040 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcc
Q 011352 120 YCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDEL 199 (488)
Q Consensus 120 ~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~ 199 (488)
..+......++..|++++|..+...+++. +... +.+|+..+.++...++..++...+..+..... ..
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p----~~ 93 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDG----DPDN-----YIAYYRRATVFLAMGKSKAALPDLTKVIQLKM----DF 93 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCcc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----Cc
Confidence 33444455566789999999988777643 1111 23356667777788888888877777654321 11
Q ss_pred cHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccC---Ch------hHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 011352 200 GQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAH---SN------QQFCRYLFYLGKIRTIQLEYTDAKESLLQAAR 268 (488)
Q Consensus 200 ~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~---~~------~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~ 268 (488)
....+.+-..|...|.++.|...+.+. ..|... .. .....-++-.|.++...++|.+|..+|..++.
T Consensus 94 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 171 (450)
T 2y4t_A 94 --TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE 171 (450)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 233445677899999999999988775 223211 00 01112245668889999999999999999998
Q ss_pred hCCccchhhHHHHHHHHHHHHHhcCCCCCc-chhcchh-hh-hhhhhHHHHHHHH-hcCCHHH
Q 011352 269 KAPVAALGFRVQCNKWAIIVRLLLGEIPER-TVFMQKG-ME-KALRPYFELTNAV-RIGDLEL 327 (488)
Q Consensus 269 ~~P~~~~~~~~~alK~lIlv~LL~G~iP~~-~ll~~~~-l~-~~l~~Y~~L~~Av-~~Gdl~~ 327 (488)
..|.... ++..+.-+-.-.|+.... ..|.+-. .. .....|..++.++ ..|+...
T Consensus 172 ~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 172 VCVWDAE-----LRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp HCTTCHH-----HHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHH
T ss_pred hCCCChH-----HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 7776432 222233333336776653 2222210 00 1233455666665 5677544
No 69
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=95.70 E-value=0.28 Score=47.34 Aligned_cols=137 Identities=11% Similarity=-0.015 Sum_probs=76.0
Q ss_pred HHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHH-
Q 011352 124 LVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQE- 202 (488)
Q Consensus 124 l~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~- 202 (488)
.....+...|++++|..+....++.- ... +.+++..+.++...++..++...+..+..............
T Consensus 103 ~l~~~~~~~g~~~~A~~~~~~al~~~----~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 173 (368)
T 1fch_A 103 YLGTTQAENEQELLAISALRRCLELK----PDN-----QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE 173 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC----TTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhcC----CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 33444567789999998877776531 121 12345566667778888887777766654321111111000
Q ss_pred --------HHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 203 --------TLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 203 --------~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
......+..++..++++.|...+.+. ..|... ....++..|.++...++|.+|..+|..++...|.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 249 (368)
T 1fch_A 174 EGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSI----DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 249 (368)
T ss_dssp ------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 00000122233667777777666553 122211 2344567777777788888888888888776665
Q ss_pred c
Q 011352 273 A 273 (488)
Q Consensus 273 ~ 273 (488)
.
T Consensus 250 ~ 250 (368)
T 1fch_A 250 D 250 (368)
T ss_dssp C
T ss_pred C
Confidence 3
No 70
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=95.63 E-value=0.24 Score=42.63 Aligned_cols=103 Identities=27% Similarity=0.285 Sum_probs=64.5
Q ss_pred HHHHHHcccCHHHHHHHHHHHHHHHHhhhhh---------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhc
Q 011352 125 VLIFLIDKKRYNEAKACSSASIARLKNMNRR---------TVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLR 195 (488)
Q Consensus 125 ~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r---------~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~ 195 (488)
....++..|+|++|..+....+..+...... .++...+.+|+..+.|
T Consensus 17 ~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~------------------------ 72 (162)
T 3rkv_A 17 KGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQC------------------------ 72 (162)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHH------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHH------------------------
Confidence 4445567899999999988887775543110 0122223333434444
Q ss_pred CCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 196 HDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 196 ~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
|++.+.|+.|.....++ ..|. ....+|..|.++...++|.+|..+|..|+...|..
T Consensus 73 ----------------~~~~~~~~~A~~~~~~al~~~p~------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 73 ----------------YLNIGDLHEAEETSSEVLKREET------NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp ----------------HHHHTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred ----------------HHhcCcHHHHHHHHHHHHhcCCc------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence 44445555444433332 1121 23457899999999999999999999999977764
No 71
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=95.62 E-value=0.41 Score=37.71 Aligned_cols=99 Identities=19% Similarity=0.172 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcCC--CCccCChhHHH
Q 011352 163 RLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFC 240 (488)
Q Consensus 163 k~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~pe~~~~~~~v 240 (488)
.+|+..+.++...++..++...+..+.+... . .....+.+-..|...++++.|...+.+.. .|.. .
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~ 77 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP----N--NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------A 77 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc----C--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc------H
Confidence 4456667777778888888877777765321 1 12234456678899999999998877642 2321 2
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 241 RYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 241 ~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
..++..|.++...++|.+|..+|..++...|..
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 78 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 346788999999999999999999999877764
No 72
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=95.61 E-value=0.24 Score=43.22 Aligned_cols=125 Identities=13% Similarity=-0.033 Sum_probs=81.3
Q ss_pred HHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHH
Q 011352 127 IFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLN 206 (488)
Q Consensus 127 ~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n 206 (488)
..+...|++++|......++..-. .. +.++...+.++...++...+...+..+.... .... ....
T Consensus 47 ~~~~~~~~~~~a~~~~~~~~~~~~----~~-----~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~----~~~~--~~~~ 111 (184)
T 3vtx_A 47 KTYMDIGLPNDAIESLKKFVVLDT----TS-----AEAYYILGSANFMIDEKQAAIDALQRAIALN----TVYA--DAYY 111 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC----CC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCH--HHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCc----hh-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----ccch--HHHH
Confidence 334567899998887666543311 11 1123444555556777777666555554321 1111 1233
Q ss_pred HHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 207 LLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 207 ~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
.+-..|.+.|+++.|.....+. ..|.. ...++..|.++...++|.+|..+|..|+..-|.
T Consensus 112 ~lg~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 112 KLGLVYDSMGEHDKAIEAYEKTISIKPGF------IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHhcchh------hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 4556889999999999877764 22322 345788999999999999999999999986553
No 73
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=95.60 E-value=0.15 Score=52.20 Aligned_cols=133 Identities=14% Similarity=-0.004 Sum_probs=62.6
Q ss_pred HHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHH
Q 011352 125 VLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETL 204 (488)
Q Consensus 125 ~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l 204 (488)
....+...|++++|......+++.-. ... .+|+..+.++...++..++...+..+..... .. ...
T Consensus 316 l~~~~~~~~~~~~A~~~~~~a~~~~~----~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----~~--~~~ 380 (537)
T 3fp2_A 316 RGQMYFILQDYKNAKEDFQKAQSLNP----ENV-----YPYIQLACLLYKQGKFTESEAFFNETKLKFP----TL--PEV 380 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT----TCS-----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TC--THH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCC----CCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CC--hHH
Confidence 33444566788888887776655311 110 1133344444455666555555554443211 11 112
Q ss_pred HHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHh----------hcHHHHHHHHHHHHHhCCc
Q 011352 205 LNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQ----------LEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 205 ~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~----------~dy~~A~~~L~~A~~~~P~ 272 (488)
...+-..|...|+++.|...+.+. ..|........+..++..|.++... ++|.+|..+|..++...|.
T Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 460 (537)
T 3fp2_A 381 PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR 460 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC
Confidence 223345555666666666555543 1121111111222334555555555 6666666666666554443
No 74
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=95.59 E-value=0.13 Score=47.50 Aligned_cols=129 Identities=11% Similarity=0.049 Sum_probs=67.3
Q ss_pred HHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHH
Q 011352 126 LIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLL 205 (488)
Q Consensus 126 ~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~ 205 (488)
...++..|++++|......+++. +....+ +++..+.++...++..++...+..+... . .+........
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~-~~~~~~~~~~ 77 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAK----KYNSPY-----IYNRRAVCYYELAKYDLAQKDIETYFSK--V-NATKAKSADF 77 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHT----TCCCST-----THHHHHHHHHHTTCHHHHHHHHHHHHTT--S-CTTTCCHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHh----CCCcHH-----HHHHHHHHHHHHhhHHHHHHHHHHHHhc--c-CchhHHHHHH
Confidence 34455667777777766665432 111110 1333444455566666666555555441 1 1222222223
Q ss_pred HHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 206 NLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 206 n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
..+-..|...|+++.|...+.+. ..|... ..++..|.++...++|.+|..+|..++...|.
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 140 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAVDRDTTRL------DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT 140 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT------HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCcccH------HHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC
Confidence 34445666777777776665553 122211 23556677777777777777777777664443
No 75
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.33 Score=49.11 Aligned_cols=102 Identities=11% Similarity=-0.053 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHc---cCCHHHHHHHHhcC--CCCccCChhHH
Q 011352 165 YFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLH---YNLYDQAEKLRSKA--PRFEAHSNQQF 239 (488)
Q Consensus 165 ~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~---~~~~~~a~~li~~~--~~pe~~~~~~~ 239 (488)
++..+.++...++..++...+..+...................+-..|+. .|+++.|...+.+. ..|..
T Consensus 375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------ 448 (514)
T 2gw1_A 375 PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS------ 448 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc------
Confidence 44455555566677666666666654332222211112233345566777 77777777766654 12211
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 240 CRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 240 v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
...++..|.++...++|.+|..+|..|+...|.
T Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 449 EQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 234567777888888888888888888876665
No 76
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=95.45 E-value=0.31 Score=47.14 Aligned_cols=147 Identities=12% Similarity=-0.013 Sum_probs=92.5
Q ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccH
Q 011352 122 YLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQ 201 (488)
Q Consensus 122 ~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~ 201 (488)
+++....+...|++++|.++... ....+ ++.....++...|+..++...+..+.+.. .....
T Consensus 104 ~~~la~~~~~~g~~~~Al~~l~~---------~~~~~-----~~~~l~~~~~~~g~~~~A~~~l~~~~~~~----p~~~~ 165 (291)
T 3mkr_A 104 LLMAASIYFYDQNPDAALRTLHQ---------GDSLE-----CMAMTVQILLKLDRLDLARKELKKMQDQD----EDATL 165 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTT---------CCSHH-----HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHhC---------CCCHH-----HHHHHHHHHHHCCCHHHHHHHHHHHHhhC----cCcHH
Confidence 34444555677889888877443 11111 23445556667888888887777765442 22222
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCccchhhHH
Q 011352 202 ETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRV 279 (488)
Q Consensus 202 ~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~~~~~~~ 279 (488)
..+....+..+...+.++.|..++... ..|.+ ...++-.|.++...++|.+|..+|..|+..-|..+.
T Consensus 166 ~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~---- 235 (291)
T 3mkr_A 166 TQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT------LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE---- 235 (291)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----
Confidence 233333445556678899988877764 23432 345677899999999999999999999987665432
Q ss_pred HHHHHHHHHHHhcCCCCC
Q 011352 280 QCNKWAIIVRLLLGEIPE 297 (488)
Q Consensus 280 ~alK~lIlv~LL~G~iP~ 297 (488)
++..++.+...+|+.++
T Consensus 236 -~l~~l~~~~~~~g~~~e 252 (291)
T 3mkr_A 236 -TLINLVVLSQHLGKPPE 252 (291)
T ss_dssp -HHHHHHHHHHHTTCCHH
T ss_pred -HHHHHHHHHHHcCCCHH
Confidence 34445555555787654
No 77
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=95.41 E-value=0.56 Score=44.52 Aligned_cols=137 Identities=13% Similarity=-0.020 Sum_probs=89.7
Q ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccH
Q 011352 122 YLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQ 201 (488)
Q Consensus 122 ~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~ 201 (488)
++.....++..|+|++|..+...+++. +... +.+++..+.++...++..++...+..+.... ....
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~- 71 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDG----DPDN-----YIAYYRRATVFLAMGKSKAALPDLTKVIALK----MDFT- 71 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCH-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh----Cccc-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCcc-
Confidence 344555667889999999998887753 1121 1235666777778888888887777665432 1111
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHhcC--CCC---ccCCh------hHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Q 011352 202 ETLLNLLLRNYLHYNLYDQAEKLRSKA--PRF---EAHSN------QQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKA 270 (488)
Q Consensus 202 ~~l~n~llr~Yl~~~~~~~a~~li~~~--~~p---e~~~~------~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~ 270 (488)
.....+-..|...|+++.|...+.+. ..| ..... .....-.+-.|.++...++|.+|..+|..++...
T Consensus 72 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 150 (359)
T 3ieg_A 72 -AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC 150 (359)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 22345667889999999999888775 223 11000 0011112334899999999999999999999877
Q ss_pred Ccc
Q 011352 271 PVA 273 (488)
Q Consensus 271 P~~ 273 (488)
|..
T Consensus 151 ~~~ 153 (359)
T 3ieg_A 151 VWD 153 (359)
T ss_dssp TTC
T ss_pred CCc
Confidence 764
No 78
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=95.35 E-value=0.35 Score=50.32 Aligned_cols=131 Identities=13% Similarity=0.005 Sum_probs=70.0
Q ss_pred HHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHH
Q 011352 127 IFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLN 206 (488)
Q Consensus 127 ~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n 206 (488)
..+...|++++|.++....++. +... +.+|.....++...|+++++...+..+..... . .....+
T Consensus 415 ~~~~~~g~~~~A~~~~~~~~~~----~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~--~~~~~~ 479 (597)
T 2xpi_A 415 HSFAIEGEHDQAISAYTTAARL----FQGT-----HLPYLFLGMQHMQLGNILLANEYLQSSYALFQ----Y--DPLLLN 479 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHT----TTTC-----SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC----C--CHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh----Cccc-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C--ChHHHH
Confidence 3445578899988877766532 1111 11133344444556666666655555543211 1 112344
Q ss_pred HHHHHHHccCCHHHHHHHHhcC--CCCc-cCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 207 LLLRNYLHYNLYDQAEKLRSKA--PRFE-AHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 207 ~llr~Yl~~~~~~~a~~li~~~--~~pe-~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
.+...|.+.|+++.|..++.+. ..|+ ...+......++..|.++...++|.+|...|..++...|.
T Consensus 480 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 5556666777777776666654 1111 1112223444566666677777777777777777665554
No 79
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=95.32 E-value=0.27 Score=42.41 Aligned_cols=96 Identities=15% Similarity=0.055 Sum_probs=67.9
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHH
Q 011352 165 YFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRY 242 (488)
Q Consensus 165 ~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y 242 (488)
++..+.++-..++..++...+..+.... ... ......+-..|...++++.|.....+. ..|... ..
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~------~~ 91 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD----HYD--SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP------RF 91 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT------HH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC----ccc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc------hH
Confidence 4555666667788888877666554322 111 122234556889999999999877774 223322 34
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 243 LFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 243 ~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
+|+.|.++...++|.+|..+|..|+...|.
T Consensus 92 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 92 PFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 789999999999999999999999997776
No 80
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=95.26 E-value=0.51 Score=43.27 Aligned_cols=33 Identities=21% Similarity=0.134 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 240 CRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 240 v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
...++..|.++...++|.+|..+|..|+...|.
T Consensus 215 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 215 SETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch
Confidence 456677788888888888888888888876554
No 81
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=95.21 E-value=0.34 Score=42.54 Aligned_cols=101 Identities=15% Similarity=0.012 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHH
Q 011352 162 ARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQF 239 (488)
Q Consensus 162 ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~ 239 (488)
+.+++..+.++-..|+..++...+..+..... ... .....+-..|...++|+.|.....+. ..|.+.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P----~~~--~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~----- 104 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF----YNV--DYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY----- 104 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCH--HHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc-----
Confidence 33466677777778999888877766654321 111 12233456789999999999987775 234332
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCccc
Q 011352 240 CRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAA 274 (488)
Q Consensus 240 v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~~ 274 (488)
..+|..|.++...++|.+|..+|..|+..+|...
T Consensus 105 -~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 105 -TPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 3478999999999999999999999999888643
No 82
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=95.18 E-value=0.27 Score=45.00 Aligned_cols=129 Identities=19% Similarity=0.068 Sum_probs=83.2
Q ss_pred HHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhh-----------ccHHHHHHHHHHHHHHhh
Q 011352 125 VLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELT-----------GDLAEIRGNLLALHRIAT 193 (488)
Q Consensus 125 ~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~-----------~~l~~~r~~L~~~~rta~ 193 (488)
....+...|++++|.....++++. +... +.+|+..+.++... |+..++...+..+.+..
T Consensus 45 lg~~~~~~g~~~~A~~~~~~al~~----~P~~-----~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~- 114 (217)
T 2pl2_A 45 LARTQLKLGLVNPALENGKTLVAR----TPRY-----LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN- 114 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH----CTTC-----HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh----CCCc-----HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-
Confidence 334455678999988877666543 2221 11244455555555 77777766665554321
Q ss_pred hcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcCCCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 194 LRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 194 ~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
.... .....+-..|...|.++.|...+.+..-.. +....++..|.++...++|.+|..+|..++...|..
T Consensus 115 ---P~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 184 (217)
T 2pl2_A 115 ---PRYA--PLHLQRGLVYALLGERDKAEASLKQALALE-----DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD 184 (217)
T ss_dssp ---TTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred ---cccH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcc-----cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 1111 222345567899999999988777641111 123456899999999999999999999999977754
No 83
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=95.15 E-value=0.23 Score=45.71 Aligned_cols=127 Identities=15% Similarity=0.034 Sum_probs=89.1
Q ss_pred cccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHH
Q 011352 131 DKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLR 210 (488)
Q Consensus 131 d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr 210 (488)
.+++|++|......+++... . .+.-.+.+|+..+.++-..++..++...+..+.... ... ......+-.
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~-~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----~~~--~~~~~~la~ 85 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRA-L----TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR----PDM--PEVFNYLGI 85 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSC-C----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CCC--HHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhccc-c----cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC----CCc--HHHHHHHHH
Confidence 34788888888777665311 1 112234457777888888899988887777766432 111 223344667
Q ss_pred HHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCccc
Q 011352 211 NYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAA 274 (488)
Q Consensus 211 ~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~~ 274 (488)
.|...|+++.|...+.+. ..|.. ...++..|.++...++|.+|..+|..++...|...
T Consensus 86 ~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 86 YLTQAGNFDAAYEAFDSVLELDPTY------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHccCHHHHHHHHHHHHhcCccc------cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence 889999999999988775 23332 24578899999999999999999999999777643
No 84
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=95.14 E-value=0.62 Score=43.71 Aligned_cols=135 Identities=9% Similarity=-0.093 Sum_probs=76.5
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHH
Q 011352 123 LLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQE 202 (488)
Q Consensus 123 ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~ 202 (488)
+.....++..+++++|..+...+++.- .. .+.+|+..+.++...++..++...+..+.... ... .
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~--~ 89 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA----PE-----REEAWRSLGLTQAENEKDGLAIIALNHARMLD----PKD--I 89 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC----TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC--H
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC----CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----cCC--H
Confidence 444556677899999998877776531 11 12234556666777888888877776665432 111 2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChh--------HHHHHHHHHHH-HHHHhhcHHHHHHHHHHHHHhCC
Q 011352 203 TLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQ--------QFCRYLFYLGK-IRTIQLEYTDAKESLLQAARKAP 271 (488)
Q Consensus 203 ~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~--------~~v~Y~YY~Gr-i~~~~~dy~~A~~~L~~A~~~~P 271 (488)
.....+-..|...|+++.|...+.+. ..|...... +.......+|. ++...++|.+|..+|..++...|
T Consensus 90 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 169 (327)
T 3cv0_A 90 AVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP 169 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC
Confidence 22334567788999999998876664 222211100 00111122244 46667777777777777776655
Q ss_pred c
Q 011352 272 V 272 (488)
Q Consensus 272 ~ 272 (488)
.
T Consensus 170 ~ 170 (327)
T 3cv0_A 170 N 170 (327)
T ss_dssp T
T ss_pred C
Confidence 4
No 85
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=95.12 E-value=0.46 Score=42.31 Aligned_cols=103 Identities=17% Similarity=-0.003 Sum_probs=68.5
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccH----------HHHHHHHHHHHHccCCHHHHHHHHhcC--CCCc
Q 011352 165 YFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQ----------ETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFE 232 (488)
Q Consensus 165 ~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~----------~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe 232 (488)
++-.+.++-..++..++...+..+.+......+.... ..+...+-..|+..++++.|.....+. ..|.
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 120 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 120 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 3334444445677777776666665432221111111 234445667899999999998877764 1222
Q ss_pred cCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 233 AHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 233 ~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
....+|..|.++...++|.+|..+|..|+...|..
T Consensus 121 ------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 155 (198)
T 2fbn_A 121 ------NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155 (198)
T ss_dssp ------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred ------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 24567899999999999999999999999877764
No 86
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=95.11 E-value=0.73 Score=37.21 Aligned_cols=103 Identities=16% Similarity=0.102 Sum_probs=69.4
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHH
Q 011352 166 FYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYL 243 (488)
Q Consensus 166 ~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~ 243 (488)
+..+.++-..++..++...+..+..... +..........+-..|+..|+++.|...+.+. ..|.+. .....+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~ 79 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYP---NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD---KAAGGL 79 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCS---SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST---THHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCC---CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc---ccHHHH
Confidence 4445555567788887776666654321 11111122234556889999999999877764 234321 124457
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhCCccc
Q 011352 244 FYLGKIRTIQLEYTDAKESLLQAARKAPVAA 274 (488)
Q Consensus 244 YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~~ 274 (488)
|..|.++...++|.+|..+|..++...|...
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence 8899999999999999999999999888643
No 87
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=95.07 E-value=1.4 Score=44.93 Aligned_cols=146 Identities=16% Similarity=0.092 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHh---hhh--hhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 011352 116 ELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKN---MNR--RTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHR 190 (488)
Q Consensus 116 ~~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~---~~~--r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~r 190 (488)
....+...+..++....+++.+|.......+..+.. .+. ...+...+.+++....++...++..++...+..+..
T Consensus 192 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~ 271 (537)
T 3fp2_A 192 AYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN 271 (537)
T ss_dssp SHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 333344444444444445454444444443333222 111 234455566678888888888999888877777764
Q ss_pred HhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 011352 191 IATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAAR 268 (488)
Q Consensus 191 ta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~ 268 (488)
.. +. ......+-..|+..|+++.|...+.+. ..|.. ...++..|.++...++|.+|..+|..++.
T Consensus 272 ~~-----~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 272 LH-----PT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY------PPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HC-----CC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cC-----CC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 32 11 223344667899999999999887775 22321 23478899999999999999999999999
Q ss_pred hCCccc
Q 011352 269 KAPVAA 274 (488)
Q Consensus 269 ~~P~~~ 274 (488)
..|...
T Consensus 339 ~~~~~~ 344 (537)
T 3fp2_A 339 LNPENV 344 (537)
T ss_dssp HCTTCS
T ss_pred hCCCCH
Confidence 877643
No 88
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=95.04 E-value=0.3 Score=41.25 Aligned_cols=96 Identities=15% Similarity=0.063 Sum_probs=67.6
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHH
Q 011352 165 YFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRY 242 (488)
Q Consensus 165 ~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y 242 (488)
++..+.++...++..++...+..+.... ... ......+-..|...++++.|.....+. ..|.. ...
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~----p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~ 88 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD----HYD--ARYFLGLGACRQSLGLYEQALQSYSYGALMDINE------PRF 88 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------THH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC----Ccc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC------cHH
Confidence 4555666667788888877766665322 111 122233556789999999999877774 22322 134
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 243 LFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 243 ~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
+|..|.++...++|.+|..+|..++...|.
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 689999999999999999999999987775
No 89
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.03 E-value=0.18 Score=49.51 Aligned_cols=181 Identities=12% Similarity=0.052 Sum_probs=96.0
Q ss_pred HHHHccCCHHHHHHHHhcCC---------CCccC-Ch----hH--HH-HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC-
Q 011352 210 RNYLHYNLYDQAEKLRSKAP---------RFEAH-SN----QQ--FC-RYLFYLGKIRTIQLEYTDAKESLLQAARKAP- 271 (488)
Q Consensus 210 r~Yl~~~~~~~a~~li~~~~---------~pe~~-~~----~~--~v-~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P- 271 (488)
+.-+..++|+.|.+++++.- .|... ++ ++ .+ .-+-.++++.+..+|+.+-.+|+.+--.-+-
T Consensus 12 ~~~~~~~d~~~~~~lL~~lK~~L~~~~~l~p~~~~~~~~~~~el~~ar~v~E~~a~~si~~~D~~~F~~~~~QLk~~Y~d 91 (274)
T 4b4t_T 12 SIAFENGDYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFS 91 (274)
T ss_dssp -------------------------------------------------CHHHHHHCCSSCSSHHHHHHHHHHHHHHTTT
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHhccCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 44456677778877777641 12111 11 11 11 2355777888888888877777666554331
Q ss_pred -c---cchhhHHHHHHHHHHHHHhcCCCCCcc----hhcc--hhhh--hhhhhHHHHHHHHhcCCHHHHHHHHHHcchhh
Q 011352 272 -V---AALGFRVQCNKWAIIVRLLLGEIPERT----VFMQ--KGME--KALRPYFELTNAVRIGDLELFKSVAEKFSSTF 339 (488)
Q Consensus 272 -~---~~~~~~~~alK~lIlv~LL~G~iP~~~----ll~~--~~l~--~~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~~~f 339 (488)
. ..++++-+++-|.++--|..|++++.. .+.. +.+. +.+..=..+-+++..||..+|=+.+.+....
T Consensus 92 ~~~~l~~s~~~~e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGnY~kff~l~~~~~~p- 170 (274)
T 4b4t_T 92 NNHKLSESDKKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQN- 170 (274)
T ss_dssp TSSCSSCSHHHHHHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTCSHHHHHHHHTCTTC-
T ss_pred hhccCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhcChHHHHHHHHHHHHHcCCHHHHHHHHhcCCCC-
Confidence 1 235677777777777655567776531 1111 0111 1233335788999999988887766553221
Q ss_pred hcCcch-HHHHHHHHHHHHHhHHHHHHhhccccHHHHHHHhcCCCCCChHHHHHHHHH
Q 011352 340 SSDRTN-NLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSK 396 (488)
Q Consensus 340 ~~D~~~-~Lv~rLr~~vir~~ir~i~~~YsrIsL~dIa~~L~l~~~~d~eeaE~ila~ 396 (488)
...| .++..+...+....++.+.++|.+||+++++..|+++++ +|+...+..
T Consensus 171 --~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~---~e~~~F~~~ 223 (274)
T 4b4t_T 171 --ISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNE---KETEKFALE 223 (274)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSH---HHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCH---HHHHHHHHH
Confidence 1112 345555555666667889999999999999999999986 777766643
No 90
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=94.98 E-value=0.73 Score=41.59 Aligned_cols=136 Identities=16% Similarity=0.026 Sum_probs=88.1
Q ss_pred HHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCccc-HHH
Q 011352 125 VLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELG-QET 203 (488)
Q Consensus 125 ~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~-~~~ 203 (488)
....+...|++++|.......++ .+.. .+.+|+..+.++...++..++...+..+.........-.. ...
T Consensus 48 ~~~~~~~~~~~~~A~~~~~~al~----~~p~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 118 (228)
T 4i17_A 48 CGVCADNIKKYKEAADYFDIAIK----KNYN-----LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAI 118 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH----TTCS-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHhhcHHHHHHHHHHHHH----hCcc-----hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 45555677999999988777653 2222 2334677788888889988888777776543211100000 112
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhcC-C-CCccCChhHHHHHHHHHHHHHHHhhcH-------------------------
Q 011352 204 LLNLLLRNYLHYNLYDQAEKLRSKA-P-RFEAHSNQQFCRYLFYLGKIRTIQLEY------------------------- 256 (488)
Q Consensus 204 l~n~llr~Yl~~~~~~~a~~li~~~-~-~pe~~~~~~~v~Y~YY~Gri~~~~~dy------------------------- 256 (488)
....+-..|+..|+++.|.....+. . .|. ......++..|.++...++.
T Consensus 119 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (228)
T 4i17_A 119 YYLKEGQKFQQAGNIEKAEENYKHATDVTSK----KWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADA 194 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH----HHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHhccHHHHHHHHHHHHhcCCC----cccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 2334556789999999999987775 2 232 01345566777777766666
Q ss_pred --HHHHHHHHHHHHhCCcc
Q 011352 257 --TDAKESLLQAARKAPVA 273 (488)
Q Consensus 257 --~~A~~~L~~A~~~~P~~ 273 (488)
.+|..+|..|+...|..
T Consensus 195 ~~~~A~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 195 AFKKAVDYLGEAVTLSPNR 213 (228)
T ss_dssp HHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhhcCCCC
Confidence 99999999999887764
No 91
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=94.96 E-value=0.21 Score=41.06 Aligned_cols=97 Identities=15% Similarity=-0.003 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHH
Q 011352 164 LYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCR 241 (488)
Q Consensus 164 ~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~ 241 (488)
.|+..+.++-..++...+...+..+...... . ......+-.+|+..++++.|...+... ..|. ...
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~----~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~~~ 78 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNPL----V--AVYYTNRALCYLKMQQPEQALADCRRALELDGQ------SVK 78 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC----c--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch------hHH
Confidence 3555666666778888887777666543211 1 223344567889999999998877764 2232 234
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 242 YLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 242 Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
.++..|.++...++|.+|..+|..|+...|.
T Consensus 79 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 79 AHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 6788999999999999999999999987665
No 92
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=94.93 E-value=0.48 Score=44.54 Aligned_cols=123 Identities=16% Similarity=0.121 Sum_probs=86.6
Q ss_pred HHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHH
Q 011352 129 LIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLL 208 (488)
Q Consensus 129 l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~l 208 (488)
+...|++++|..+...+++.- ... +.+++..+.++...++..++...+..+..... .. ......+
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~----~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----~~--~~~~~~l 212 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN----PND-----AQLHASLGVLYNLSNNYDSAAANLRRAVELRP----DD--AQLWNKL 212 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS----TTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TC--HHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC----CCC-----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC----Cc--HHHHHHH
Confidence 567789999988877765432 111 22355666677778888888877777654321 11 2234456
Q ss_pred HHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 209 LRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 209 lr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
-..|+..|+++.|...+.+. ..|.. ...++..|.++...++|.+|..+|..++...|.
T Consensus 213 ~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 213 GATLANGNRPQEALDAYNRALDINPGY------VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 67889999999999887764 22321 234678999999999999999999999987665
No 93
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=94.93 E-value=0.27 Score=49.05 Aligned_cols=200 Identities=11% Similarity=0.033 Sum_probs=112.6
Q ss_pred HHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHH
Q 011352 126 LIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLL 205 (488)
Q Consensus 126 ~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~ 205 (488)
...+...|++++|..+...++.. +... +.+++..+.++...++..++...+..+.+... ......
T Consensus 150 a~~~~~~~~~~~A~~~~~~~~~~----~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~ 214 (450)
T 2y4t_A 150 ALNAFGSGDYTAAIAFLDKILEV----CVWD-----AELRELRAECFIKEGEPRKAISDLKAASKLKN------DNTEAF 214 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH----CTTC-----HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC------SCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh----CCCC-----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHH
Confidence 44456788999999888777643 1111 12244555666667777777666666654321 112344
Q ss_pred HHHHHHHHccCCHHHHHHHHhcC--CCCccCChhH------HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCccchhh
Q 011352 206 NLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQ------FCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGF 277 (488)
Q Consensus 206 n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~------~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~~~~~ 277 (488)
+.+-..|...|+++.|...+... ..|....... .+.-..-.|.++...++|.+|..+|..++...|.. ...
T Consensus 215 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~ 293 (450)
T 2y4t_A 215 YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSI-AEY 293 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSS-HHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc-hHH
Confidence 45667788888888888877764 2333221111 11223445888888888888888888888866663 334
Q ss_pred HHHHHHHHHHHHHhcCCCCCc-chhcchh-hh-hhhhhHHHHHHHH-hcCCHHHHHHHHHHcchhhhcCcc
Q 011352 278 RVQCNKWAIIVRLLLGEIPER-TVFMQKG-ME-KALRPYFELTNAV-RIGDLELFKSVAEKFSSTFSSDRT 344 (488)
Q Consensus 278 ~~~alK~lIlv~LL~G~iP~~-~ll~~~~-l~-~~l~~Y~~L~~Av-~~Gdl~~f~~~l~~~~~~f~~D~~ 344 (488)
...++..+..+-.-+|+.... ..+..-. .. .....|..+..++ ..|+. ++++..++..+..++.
T Consensus 294 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~---~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 294 TVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMY---DEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHhCcc
Confidence 445555555555556665542 1222110 01 1234566677766 45764 4444444444444443
No 94
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=94.81 E-value=0.49 Score=38.01 Aligned_cols=97 Identities=11% Similarity=-0.049 Sum_probs=67.9
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHH
Q 011352 165 YFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRY 242 (488)
Q Consensus 165 ~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y 242 (488)
|+..+.++...++..++...+..+.+.. +.. ......+-..|+..++++.|...+.+. ..|. ....
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~-----~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~ 86 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRN-----PKD-AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT------FIKG 86 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTC-----TTC-HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT------CHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------chHH
Confidence 4555556666777777776666665321 111 223344667889999999999877764 2232 2345
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 243 LFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 243 ~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
++..|.++...++|.+|..+|..++...|..
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDLDSSC 117 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc
Confidence 7889999999999999999999999877653
No 95
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=94.76 E-value=1 Score=37.75 Aligned_cols=130 Identities=12% Similarity=-0.057 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcc
Q 011352 120 YCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDEL 199 (488)
Q Consensus 120 ~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~ 199 (488)
..+......++..|++++|......+++.- ... +.+|+..+.++...++..++...+..+.+... ..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~----~~ 80 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN----PSN-----AIYYGNRSLAYLRTECYGYALGDATRAIELDK----KY 80 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----cc
Confidence 334444555667889999988877776531 111 23356667777778888888777766654321 11
Q ss_pred cHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 011352 200 GQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAAR 268 (488)
Q Consensus 200 ~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~ 268 (488)
......+-..|+..|+++.|...+.+. ..|. ...+.+.+-.|..+...++|.+|..++..+..
T Consensus 81 --~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 81 --IKGYYRRAASNMALGKFRAALRDYETVVKVKPH----DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 122234456778888888888877664 1222 22233445555557778888888888777654
No 96
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=94.66 E-value=0.24 Score=41.57 Aligned_cols=99 Identities=10% Similarity=-0.032 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC-C-CCccCChhHHH
Q 011352 163 RLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA-P-RFEAHSNQQFC 240 (488)
Q Consensus 163 k~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~-~-~pe~~~~~~~v 240 (488)
..+.-...++-..|+..++...+..+.... +.- ..+...+-..|++.|+++.|.....++ . .|. ..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-----p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~ 81 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-----PEN-AILYSNRAACLTKLMEFQRALDDCDTCIRLDSK------FI 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC-HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh------hh
Confidence 334433444445777877777666665432 111 222334556889999999998877764 1 232 13
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 241 RYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 241 ~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
..++..|.++...++|.+|..+|..|++.-|..
T Consensus 82 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 82 KGYIRKAACLVAMREWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC
Confidence 457899999999999999999999999987764
No 97
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=94.64 E-value=0.4 Score=48.49 Aligned_cols=130 Identities=11% Similarity=0.011 Sum_probs=92.6
Q ss_pred cccCHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHH
Q 011352 131 DKKRYNEAKACSSASIARLKNMN-----RRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLL 205 (488)
Q Consensus 131 d~~~~~~A~~~~~~lv~~l~~~~-----~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~ 205 (488)
..|++++|..+...+++.....- ....+.-.+.+++..+.++...++..++...+..+.... . . ....
T Consensus 201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~----~-~--~~~~ 273 (514)
T 2gw1_A 201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF----P-R--VNSY 273 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC----C-C--HHHH
T ss_pred hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----c-c--HHHH
Confidence 37999999999888887532211 111234445567778888888899988887776665432 1 1 3444
Q ss_pred HHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 206 NLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 206 n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
..+...|...|.++.|...+.+. ..|.. ...++..|.++...++|.+|..+|..++...|..
T Consensus 274 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 337 (514)
T 2gw1_A 274 IYMALIMADRNDSTEYYNYFDKALKLDSNN------SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN 337 (514)
T ss_dssp HHHHHHHHTSSCCTTGGGHHHHHHTTCTTC------THHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhhcCcCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh
Confidence 55677899999999998877764 22322 1246789999999999999999999999877764
No 98
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=94.64 E-value=0.81 Score=35.58 Aligned_cols=98 Identities=8% Similarity=-0.025 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHH
Q 011352 164 LYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCR 241 (488)
Q Consensus 164 ~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~ 241 (488)
.++..+.++...++..++...+..+..... .. ......+-..|+..++++.|...+.+. ..|. ...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~ 73 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDP----HN--HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------WGK 73 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCC----Cc--HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc------cHH
Confidence 345556666677888888777766654321 11 223344556788999999998877764 2232 134
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 242 YLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 242 Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
.++..|.++...++|.+|..+|..++...|..
T Consensus 74 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 105 (118)
T 1elw_A 74 GYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 57789999999999999999999999876753
No 99
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=94.58 E-value=0.94 Score=37.96 Aligned_cols=97 Identities=9% Similarity=-0.067 Sum_probs=69.0
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHH
Q 011352 165 YFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRY 242 (488)
Q Consensus 165 ~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y 242 (488)
++..+.++-..++...+...+..+...... . ......+-..|+..++++.|...+.+. ..|.. ...
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~----~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~ 83 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPS----N--AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY------IKG 83 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC----C--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------HHH
Confidence 455555566678888887777776543211 1 223334556889999999999877764 22322 345
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 243 LFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 243 ~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
++..|.++...++|.+|..+|..++...|..
T Consensus 84 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~ 114 (166)
T 1a17_A 84 YYRRAASNMALGKFRAALRDYETVVKVKPHD 114 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 7889999999999999999999999977764
No 100
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.58 E-value=0.5 Score=38.84 Aligned_cols=98 Identities=16% Similarity=0.010 Sum_probs=65.2
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHH
Q 011352 167 YYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLF 244 (488)
Q Consensus 167 y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~Y 244 (488)
..+.++...++..++...+..+.+.. .+..........+-..|+..++++.|...+.+. ..|.. ...++
T Consensus 33 ~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~ 103 (148)
T 2dba_A 33 KEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD------VKALY 103 (148)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC------HHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC------HHHHH
Confidence 33444445667766666555554321 111112333445667899999999998877664 22322 45578
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 245 YLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 245 Y~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
..|.++...++|.+|..+|..++...|..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999977763
No 101
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=94.55 E-value=0.38 Score=50.05 Aligned_cols=194 Identities=9% Similarity=-0.053 Sum_probs=117.9
Q ss_pred HHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHH
Q 011352 126 LIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLL 205 (488)
Q Consensus 126 ~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~ 205 (488)
...+...|++++|.++....++. +.... .+|.....++...|+..++...+..+.... ... ....
T Consensus 380 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~--~~~~ 444 (597)
T 2xpi_A 380 GIYYLCVNKISEARRYFSKSSTM----DPQFG-----PAWIGFAHSFAIEGEHDQAISAYTTAARLF----QGT--HLPY 444 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH----CTTCH-----HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----TTC--SHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh----CCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----ccc--hHHH
Confidence 34456779999999988877652 22211 124455566667888888887776665322 111 2334
Q ss_pred HHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc--cchhhHHHH
Q 011352 206 NLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV--AALGFRVQC 281 (488)
Q Consensus 206 n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~--~~~~~~~~a 281 (488)
+.+...|.+.|+++.|..++... ..|... ..++..|.++...++|.+|..+|..++...|. ..+.....+
T Consensus 445 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~ 518 (597)
T 2xpi_A 445 LFLGMQHMQLGNILLANEYLQSSYALFQYDP------LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHH
Confidence 45678899999999999988875 223211 23678999999999999999999999988543 112222344
Q ss_pred HHHHHHHHHhcCCCCCc-chhcchh-hh-hhhhhHHHHHHHH-hcCCHHHHHHHHHHcchhhhcCc
Q 011352 282 NKWAIIVRLLLGEIPER-TVFMQKG-ME-KALRPYFELTNAV-RIGDLELFKSVAEKFSSTFSSDR 343 (488)
Q Consensus 282 lK~lIlv~LL~G~iP~~-~ll~~~~-l~-~~l~~Y~~L~~Av-~~Gdl~~f~~~l~~~~~~f~~D~ 343 (488)
+..+.-+-.-.|+.... ..+.+-. .. .....|..+..++ +.|+..+ +++.++..+..+.
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~l~~~p 581 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGL---AITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHH---HHHHHHHHHhcCC
Confidence 44455555556765542 2222210 11 1335677788876 5677544 3443444333343
No 102
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=94.53 E-value=0.7 Score=36.59 Aligned_cols=97 Identities=20% Similarity=0.164 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcCC--CCccCChhHHHH
Q 011352 164 LYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCR 241 (488)
Q Consensus 164 ~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~pe~~~~~~~v~ 241 (488)
+|+..+.++...++..++...+..+.... ... ......+...|...++++.|...+.+.. .|.. ..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~ 70 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD----PRS--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AE 70 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC----Ccc--hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc------hH
Confidence 35555666666788887777666665432 111 1223345677889999999998777641 2221 23
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 242 YLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 242 Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
.++..|.++...++|.+|..+|..++...|.
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 101 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 4677899999999999999999999986664
No 103
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=94.52 E-value=0.58 Score=38.11 Aligned_cols=95 Identities=15% Similarity=-0.037 Sum_probs=67.0
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHH
Q 011352 165 YFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRY 242 (488)
Q Consensus 165 ~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y 242 (488)
|+-.+..+-..++..++...+..+.+.... . ......+-..|++.++++.|.....+. ..|.. ...
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~ 74 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE----D--ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF------VRA 74 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----C--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc------HHH
Confidence 444455555677888887777666543211 1 233344566889999999998877764 22322 345
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCC
Q 011352 243 LFYLGKIRTIQLEYTDAKESLLQAARKAP 271 (488)
Q Consensus 243 ~YY~Gri~~~~~dy~~A~~~L~~A~~~~P 271 (488)
++..|.++...++|.+|..+|..++...|
T Consensus 75 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p 103 (126)
T 3upv_A 75 YIRKATAQIAVKEYASALETLDAARTKDA 103 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHhCc
Confidence 78999999999999999999999998763
No 104
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=94.47 E-value=0.53 Score=46.23 Aligned_cols=29 Identities=21% Similarity=0.121 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCC
Q 011352 243 LFYLGKIRTIQLEYTDAKESLLQAARKAP 271 (488)
Q Consensus 243 ~YY~Gri~~~~~dy~~A~~~L~~A~~~~P 271 (488)
++..|.++...++|.+|..+|..++...|
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 342 HSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 34444555555555555555555554333
No 105
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=94.39 E-value=2.9 Score=38.10 Aligned_cols=128 Identities=13% Similarity=0.082 Sum_probs=89.4
Q ss_pred HHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHH
Q 011352 128 FLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNL 207 (488)
Q Consensus 128 ~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~ 207 (488)
.+...|++++|......+++ .. -+.. ..+.+|+..+.++...++..++...+..+...... . ......
T Consensus 46 ~~~~~~~~~~A~~~~~~a~~-~~-~~~~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~----~--~~~~~~ 113 (272)
T 3u4t_A 46 CYYELAKYDLAQKDIETYFS-KV-NATK----AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT----R--LDMYGQ 113 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHT-TS-CTTT----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----C--THHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHh-cc-Cchh----HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc----c--HHHHHH
Confidence 55667999999998888776 21 1111 22444677788888889998888877777653211 1 123445
Q ss_pred HHHHHHccCCHHHHHHHHhcCC--CCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 208 LLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 208 llr~Yl~~~~~~~a~~li~~~~--~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
+-..|+..|+++.|...+.+.. .|.. ...++..|......++|.+|..+|..++...|..
T Consensus 114 l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 175 (272)
T 3u4t_A 114 IGSYFYNKGNFPLAIQYMEKQIRPTTTD------PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI 175 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHGGGCCSSCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHhhcCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 6678999999999999888762 2221 3346778844455669999999999999987765
No 106
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=94.38 E-value=0.66 Score=51.44 Aligned_cols=129 Identities=12% Similarity=-0.037 Sum_probs=90.9
Q ss_pred HHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHH
Q 011352 124 LVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQET 203 (488)
Q Consensus 124 l~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~ 203 (488)
..-..+.+.|++++|.++..+.++. +... +.+|+.++.++...|+..++...+..+.+.. ... .-
T Consensus 14 nLG~~~~~~G~~~eAi~~~~kAl~l----~P~~-----~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~----P~~--~~ 78 (723)
T 4gyw_A 14 NLANIKREQGNIEEAVRLYRKALEV----FPEF-----AAAHSNLASVLQQQGKLQEALMHYKEAIRIS----PTF--AD 78 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CSCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC--HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCC--HH
Confidence 3344556789999999987777643 2221 2235667777888899998887776665432 111 12
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 204 LLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 204 l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
..+.+-..|...|+++.|....++. ..|.. ...++.+|.++..+++|.+|..+|..|++..|..
T Consensus 79 a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~------~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~ 144 (723)
T 4gyw_A 79 AYSNMGNTLKEMQDVQGALQCYTRAIQINPAF------ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 144 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 2334556788999999998877764 22322 3447889999999999999999999999987764
No 107
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=94.36 E-value=0.81 Score=47.32 Aligned_cols=108 Identities=14% Similarity=0.117 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhh------hhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHh
Q 011352 119 IYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNR------RTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIA 192 (488)
Q Consensus 119 ~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~------r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta 192 (488)
...+......++..++|++|..+..+.++....... ..+..+.+.+|+..+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~---------------------- 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM---------------------- 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH----------------------
Confidence 334455566677789999999998888876543310 0112222333333333
Q ss_pred hhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Q 011352 193 TLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKA 270 (488)
Q Consensus 193 ~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~ 270 (488)
+|++.++|+.|....+++ ..|. ....+|..|.++...++|.+|..+|..|+...
T Consensus 326 ------------------~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 326 ------------------CYLKLREYTKAVECCDKALGLDSA------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp ------------------HHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ------------------HHHHhcCHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 445555555555444442 1121 13457788888888888888888888888866
Q ss_pred Cc
Q 011352 271 PV 272 (488)
Q Consensus 271 P~ 272 (488)
|.
T Consensus 382 P~ 383 (457)
T 1kt0_A 382 PQ 383 (457)
T ss_dssp --
T ss_pred CC
Confidence 65
No 108
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=94.08 E-value=0.31 Score=44.56 Aligned_cols=127 Identities=17% Similarity=0.066 Sum_probs=84.2
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHH
Q 011352 123 LLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQE 202 (488)
Q Consensus 123 ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~ 202 (488)
......++..|++++|..+....++ .+... +.+|+..+.++...|+..++...+..+.... .....
T Consensus 9 ~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~----P~~~~- 74 (217)
T 2pl2_A 9 LRLGVQLYALGRYDAALTLFERALK----ENPQD-----PEALYWLARTQLKLGLVNPALENGKTLVART----PRYLG- 74 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT----TSSSC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHH-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcHH-
Confidence 3445566788999999988666543 22222 2235667777778899888877766665422 11111
Q ss_pred HHHHHHHHHHHcc-----------CCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Q 011352 203 TLLNLLLRNYLHY-----------NLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARK 269 (488)
Q Consensus 203 ~l~n~llr~Yl~~-----------~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~ 269 (488)
....+-..|... |+++.|...+.+. ..|.. ...++..|.++...++|.+|..+|..|+..
T Consensus 75 -a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 75 -GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY------APLHLQRGLVYALLGERDKAEASLKQALAL 147 (217)
T ss_dssp -HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 112233455666 8999998877775 23322 345678999999999999999999999985
Q ss_pred C
Q 011352 270 A 270 (488)
Q Consensus 270 ~ 270 (488)
.
T Consensus 148 ~ 148 (217)
T 2pl2_A 148 E 148 (217)
T ss_dssp C
T ss_pred c
Confidence 3
No 109
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=93.99 E-value=0.75 Score=47.69 Aligned_cols=134 Identities=15% Similarity=0.078 Sum_probs=84.4
Q ss_pred HHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhh---------ccHHHHHHHHHHHHHHhhhc
Q 011352 125 VLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELT---------GDLAEIRGNLLALHRIATLR 195 (488)
Q Consensus 125 ~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~---------~~l~~~r~~L~~~~rta~~~ 195 (488)
....+...|++++|..+..++++. +.. +.+++.++.++... +++.++...+..+.....
T Consensus 143 lg~~~~~~g~~~~A~~~~~~al~~----~p~------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-- 210 (474)
T 4abn_A 143 LGEVYWKKGDVTSAHTCFSGALTH----CKN------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-- 210 (474)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTT----CCC------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT--
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh----CCC------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC--
Confidence 334445678999988887766532 222 13355666666666 777777766666654321
Q ss_pred CCcccHHHHHHHHHHHHHcc----CCHHHHHHHHhcCC--CCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Q 011352 196 HDELGQETLLNLLLRNYLHY----NLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARK 269 (488)
Q Consensus 196 ~~~~~~~~l~n~llr~Yl~~----~~~~~a~~li~~~~--~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~ 269 (488)
.+......+..++++.||.. ++++.|...+.+.. .|. .......++..|.++...++|.+|..+|..|+..
T Consensus 211 ~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 211 LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK---ASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG---GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC---cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11222223334444444444 55899888777641 231 1134566889999999999999999999999987
Q ss_pred CCcc
Q 011352 270 APVA 273 (488)
Q Consensus 270 ~P~~ 273 (488)
.|..
T Consensus 288 ~p~~ 291 (474)
T 4abn_A 288 DPAW 291 (474)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 6663
No 110
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=93.98 E-value=1.1 Score=44.06 Aligned_cols=106 Identities=10% Similarity=-0.039 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCC---------cccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CC
Q 011352 162 ARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHD---------ELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PR 230 (488)
Q Consensus 162 ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~---------~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~ 230 (488)
+.+|+....++...++..++...+..+.+....... ........+.+-.+|++.++++.|.....+. ..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 444566666666788888888777777654322110 0011233445667899999999999877775 22
Q ss_pred CccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 231 FEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 231 pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
|. ....+|..|.++...++|.+|..+|..|+...|..
T Consensus 227 p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 227 SN------NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp TT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred CC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 32 23457899999999999999999999999987764
No 111
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=93.91 E-value=1.4 Score=38.11 Aligned_cols=123 Identities=13% Similarity=0.068 Sum_probs=78.2
Q ss_pred HcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHH
Q 011352 130 IDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLL 209 (488)
Q Consensus 130 ~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~ll 209 (488)
++.+++++|.......++. +... +.+|+..+.++...++..++...+..+...... + ......+-
T Consensus 21 ~~~~~~~~A~~~~~~al~~----~p~~-----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~la 85 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA----NPQN-----SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE--N----AELYAALA 85 (177)
T ss_dssp C-----CCCCHHHHHHHHH----CCSC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS--C----HHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHh----CCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C----HHHHHHHH
Confidence 4567777777665555432 1111 123566667777788888888777766543311 1 12223344
Q ss_pred HH-HHccCCH--HHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 210 RN-YLHYNLY--DQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 210 r~-Yl~~~~~--~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
.. |+..+.+ +.|...+.+. ..|.. ...++..|.++...++|.+|..+|..++...|..
T Consensus 86 ~~l~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 86 TVLYYQASQHMTAQTRAMIDKALALDSNE------ITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 55 7788998 9998877764 22322 3457889999999999999999999999988874
No 112
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=93.91 E-value=1.1 Score=43.84 Aligned_cols=124 Identities=15% Similarity=0.035 Sum_probs=59.6
Q ss_pred HHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHH
Q 011352 128 FLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNL 207 (488)
Q Consensus 128 ~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~ 207 (488)
.+...|++++|.++..+.++. +... +.+|+....++...++..++...+..+.+.. ... ......
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~----~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~--~~~~~~ 208 (388)
T 1w3b_A 144 LLKALGRLEEAKACYLKAIET----QPNF-----AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD----PNF--LDAYIN 208 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHH----CTTC-----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----TTC--HHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCc--HHHHHH
Confidence 345568888888876666543 1111 1123444445555666665555554444321 111 111222
Q ss_pred HHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 208 LLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 208 llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
+-..|...+.++.|.....+. ..|.. ...++..|.++...++|.+|..+|..++...|.
T Consensus 209 lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 269 (388)
T 1w3b_A 209 LGNVLKEARIFDRAVAAYLRALSLSPNH------AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269 (388)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 334555566666555544432 11211 122345556666666666666666666654443
No 113
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=93.87 E-value=0.32 Score=50.53 Aligned_cols=129 Identities=14% Similarity=0.015 Sum_probs=91.3
Q ss_pred HHHHHHHHHHcccCH-HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcc
Q 011352 121 CYLLVLIFLIDKKRY-NEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDEL 199 (488)
Q Consensus 121 ~~ll~~~~l~d~~~~-~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~ 199 (488)
.+......+...++| ++|.++..+.++. +... +.+|+..+.++...++..++...+..++... +.
T Consensus 104 ~~~~lg~~~~~~g~~~~~A~~~~~~al~~----~p~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~ 169 (474)
T 4abn_A 104 ALMLKGKALNVTPDYSPEAEVLLSKAVKL----EPEL-----VEAWNQLGEVYWKKGDVTSAHTCFSGALTHC-----KN 169 (474)
T ss_dssp HHHHHHHHHTSSSSCCHHHHHHHHHHHHH----CTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-----CC
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhh----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CC
Confidence 344555566778999 9999887777653 2221 2235667777778899988887776665422 22
Q ss_pred cHHHHHHHHHHHHHcc---------CCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHh--------hcHHHHH
Q 011352 200 GQETLLNLLLRNYLHY---------NLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQ--------LEYTDAK 260 (488)
Q Consensus 200 ~~~~l~n~llr~Yl~~---------~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~--------~dy~~A~ 260 (488)
......+-..|... ++++.|...+.+. ..|.. ...++..|.++... ++|.+|.
T Consensus 170 --~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 170 --KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD------GRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp --HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 23444566788888 9999998887775 22322 24578899999999 9999999
Q ss_pred HHHHHHHHhCC
Q 011352 261 ESLLQAARKAP 271 (488)
Q Consensus 261 ~~L~~A~~~~P 271 (488)
.+|..|+...|
T Consensus 242 ~~~~~al~~~p 252 (474)
T 4abn_A 242 SAYAQAEKVDR 252 (474)
T ss_dssp HHHHHHHHHCG
T ss_pred HHHHHHHHhCC
Confidence 99999998666
No 114
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=93.63 E-value=0.37 Score=41.49 Aligned_cols=98 Identities=10% Similarity=0.021 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHH
Q 011352 165 YFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRY 242 (488)
Q Consensus 165 ~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y 242 (488)
+|.++.++...++..++...+..+.+... .. ......+-.+|...|+++.|.....+. ..|.. ...
T Consensus 34 ~~~la~~y~~~~~~~~A~~~~~~al~~~p----~~--~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~ 101 (150)
T 4ga2_A 34 GFYFAKLYYEAKEYDLAKKYICTYINVQE----RD--PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQ------KDL 101 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CC--HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC------HHH
Confidence 56666777777888777776666654321 11 112233445677888888887766654 12322 223
Q ss_pred HHHHHHHHHHhhcHHHHHH-HHHHHHHhCCccc
Q 011352 243 LFYLGKIRTIQLEYTDAKE-SLLQAARKAPVAA 274 (488)
Q Consensus 243 ~YY~Gri~~~~~dy~~A~~-~L~~A~~~~P~~~ 274 (488)
++..|.++...++|.+|.. ++..|++..|..+
T Consensus 102 ~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~ 134 (150)
T 4ga2_A 102 VLKIAELLCKNDVTDGRAKYWVERAAKLFPGSP 134 (150)
T ss_dssp HHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCH
Confidence 5677888888888876654 4577887666543
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=93.59 E-value=0.78 Score=48.25 Aligned_cols=130 Identities=12% Similarity=-0.104 Sum_probs=91.5
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHH
Q 011352 123 LLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQE 202 (488)
Q Consensus 123 ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~ 202 (488)
......+...|++++|.+...+.++. +... +.+|+.++.++...++.+++...+..+..... .. .
T Consensus 27 ~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~~--~ 91 (568)
T 2vsy_A 27 LMLADAELGMGDTTAGEMAVQRGLAL----HPGH-----PEAVARLGRVRWTQQRHAEAAVLLQQASDAAP----EH--P 91 (568)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTT----STTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TC--H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----CC--H
Confidence 33444556679999999887766542 2221 22356677778888999888877777764321 11 2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHh---hcHHHHHHHHHHHHHhCCcc
Q 011352 203 TLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQ---LEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 203 ~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~---~dy~~A~~~L~~A~~~~P~~ 273 (488)
...+.+-..|...|+++.|...+.+. ..|.. ...++..|.++... +++.+|..+|..++...|..
T Consensus 92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 92 GIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE------PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 23344667899999999999887775 22322 24467899999999 99999999999999988873
No 116
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=93.56 E-value=1.1 Score=37.33 Aligned_cols=98 Identities=10% Similarity=-0.009 Sum_probs=66.4
Q ss_pred HHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC-C-CCcc-CChhHHHHHHHH
Q 011352 169 SLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA-P-RFEA-HSNQQFCRYLFY 245 (488)
Q Consensus 169 s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~-~-~pe~-~~~~~~v~Y~YY 245 (488)
..++-..++..++...+..+.... +.. ....+.+-..|++.++|+.|.....+. . .|+. ......+.-++.
T Consensus 15 G~~~~~~~~~~~A~~~y~~Al~~~-----p~~-~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 15 GNAAYKQKDFEKAHVHYDKAIELD-----PSN-ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-----TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-----CCC-HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 333345677777776666665421 111 223334556899999999998877764 1 2332 233445566788
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 246 LGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 246 ~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
.|.++...++|.+|.++|..|+...|.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 999999999999999999999986554
No 117
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=93.38 E-value=0.69 Score=47.01 Aligned_cols=130 Identities=8% Similarity=-0.087 Sum_probs=86.8
Q ss_pred HHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHhhhcCCcccHHH
Q 011352 125 VLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGD-LAEIRGNLLALHRIATLRHDELGQET 203 (488)
Q Consensus 125 ~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~-l~~~r~~L~~~~rta~~~~~~~~~~~ 203 (488)
....+...+++++|..+..+++.. +... +.+|++...++...++ +.++...+..+.+.. .+.. .
T Consensus 103 lg~~~~~~g~~~~Al~~~~~al~l----~P~~-----~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~----P~~~--~ 167 (382)
T 2h6f_A 103 FRAVLQRDERSERAFKLTRDAIEL----NAAN-----YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ----PKNY--Q 167 (382)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHH----CTTC-----HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC----TTCH--H
T ss_pred HHHHHHHCCChHHHHHHHHHHHHh----CccC-----HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC----CCCH--H
Confidence 334456678999999987777642 2221 1235666777777786 888776665554322 2221 1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCccch
Q 011352 204 LLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAAL 275 (488)
Q Consensus 204 l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~~~ 275 (488)
..+.+-..|...+.++.|...+++. ..|.+ ..-+++.|.++...++|.+|..+|..|+..-|....
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~------~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~ 235 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQDAKN------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS 235 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCccC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH
Confidence 2233444677889999998887775 22322 233689999999999999999999999998776443
No 118
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=93.09 E-value=0.2 Score=39.02 Aligned_cols=98 Identities=7% Similarity=-0.091 Sum_probs=63.0
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHH
Q 011352 166 FYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYL 243 (488)
Q Consensus 166 ~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~ 243 (488)
+..+.++...++..++...+..+.... ... ......+-..|+..++++.|...+.+. ..|. ......+
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~ 79 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLD----PEE--SKYWLMKGKALYNLERYEEAVDCYNYVINVIED----EYNKDVW 79 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHC----CCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC----TTCHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhC----cCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc----cchHHHH
Confidence 334445556677777766665554322 111 112234556788889999988877764 2232 0123457
Q ss_pred HHHHHHHHHh-hcHHHHHHHHHHHHHhCCcc
Q 011352 244 FYLGKIRTIQ-LEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 244 YY~Gri~~~~-~dy~~A~~~L~~A~~~~P~~ 273 (488)
+..|.++... ++|.+|..+|..++...|..
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 7889999999 99999999999998877753
No 119
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=93.04 E-value=2.5 Score=41.54 Aligned_cols=138 Identities=9% Similarity=-0.067 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhh------hhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhh
Q 011352 120 YCYLLVLIFLIDKKRYNEAKACSSASIARLKNMN------RRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIAT 193 (488)
Q Consensus 120 ~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~------~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~ 193 (488)
..+......++..++|++|..+..+.++...... ......+.+.+|+..+.++...++..++...+..+++...
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444455566778999999999888887654331 1134455567788889999999999988887777765321
Q ss_pred hcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHH-HHHHHHHHh
Q 011352 194 LRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAK-ESLLQAARK 269 (488)
Q Consensus 194 ~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~-~~L~~A~~~ 269 (488)
.. ......+-..|+..++++.|...+.+. ..|.. ...++..|.++...+++.+|. ..+..+|.+
T Consensus 228 ----~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 228 ----NN--EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN------KAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp ----TC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----Cc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 122334567899999999999887775 22322 234678999999999999994 566666653
No 120
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=93.00 E-value=1.3 Score=44.50 Aligned_cols=99 Identities=12% Similarity=-0.061 Sum_probs=66.1
Q ss_pred HHHHHhhccHHHHHHHHHHHHHHhhhc----------CCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCCh
Q 011352 169 SLCYELTGDLAEIRGNLLALHRIATLR----------HDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSN 236 (488)
Q Consensus 169 s~~~e~~~~l~~~r~~L~~~~rta~~~----------~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~ 236 (488)
+..+...++..++...+..+++..... ........+.+.+-..|++.++|+.|....++. ..|.
T Consensus 230 g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---- 305 (370)
T 1ihg_A 230 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS---- 305 (370)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT----
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch----
Confidence 333444566666666555555422110 011222344455667899999999998877765 2232
Q ss_pred hHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 237 QQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 237 ~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
....+|..|.++...++|.+|..+|..|+...|..
T Consensus 306 --~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~ 340 (370)
T 1ihg_A 306 --NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED 340 (370)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred --hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 24557899999999999999999999999987763
No 121
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=92.60 E-value=1.2 Score=34.80 Aligned_cols=84 Identities=14% Similarity=0.029 Sum_probs=57.8
Q ss_pred HHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc-chhhHHHHHH
Q 011352 207 LLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA-ALGFRVQCNK 283 (488)
Q Consensus 207 ~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~-~~~~~~~alK 283 (488)
.+-..|+..++++.|.....+. ..|.. ...++..|.++...++|.+|..+|..|+...|.. .......++.
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 9 EQGNSLFKQGLYREAVHCYDQLITAQPQN------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3445788899999998877664 22322 3457899999999999999999999999977764 2333344444
Q ss_pred HHHHHHHhcCCCC
Q 011352 284 WAIIVRLLLGEIP 296 (488)
Q Consensus 284 ~lIlv~LL~G~iP 296 (488)
.+-.+..-+|...
T Consensus 83 ~~~~~~~~~~~~~ 95 (111)
T 2l6j_A 83 RLELAQGAVGSVQ 95 (111)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhHh
Confidence 4444444456543
No 122
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=92.58 E-value=0.41 Score=38.94 Aligned_cols=63 Identities=13% Similarity=0.040 Sum_probs=50.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 205 LNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 205 ~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
...+-..|+..++++.|...+.+. ..|+. ...++..|.++...++|.+|..+|..++...|..
T Consensus 30 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 30 YLGLGSTFRTLGEYRKAEAVLANGVKQFPNH------QALRVFYAMVLYNLGRYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 344567888999999998877775 23433 3457889999999999999999999999977763
No 123
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=92.51 E-value=0.87 Score=47.91 Aligned_cols=120 Identities=12% Similarity=-0.048 Sum_probs=71.9
Q ss_pred cCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHH
Q 011352 133 KRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNY 212 (488)
Q Consensus 133 ~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Y 212 (488)
+++++|.++..++++. +... +.+|+..+.++...++..++...+..+.... ... ......+-..|
T Consensus 3 g~~~~A~~~~~~al~~----~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~--~~~~~~lg~~~ 67 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRH----RPQD-----FVAWLMLADAELGMGDTTAGEMAVQRGLALH----PGH--PEAVARLGRVR 67 (568)
T ss_dssp ----------------------CC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS----TTC--HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCC--HHHHHHHHHHH
Confidence 5677777766655432 1111 2235566667777888888877776665422 111 22334456788
Q ss_pred HccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 213 LHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 213 l~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
...|+++.|.....+. ..|.. ...++..|.++...++|.+|..+|..|+...|..
T Consensus 68 ~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 124 (568)
T 2vsy_A 68 WTQQRHAEAAVLLQQASDAAPEH------PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHCCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999887774 22322 3457889999999999999999999999987764
No 124
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=92.43 E-value=0.95 Score=33.95 Aligned_cols=62 Identities=24% Similarity=0.194 Sum_probs=47.8
Q ss_pred HHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 206 NLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 206 n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
..+-..|+..++++.|.....+. ..|.. ...++..|.++...++|.+|..+|..++...|..
T Consensus 13 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 76 (91)
T 1na3_A 13 YNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (91)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 34556788889999988877664 22321 3457789999999999999999999999877764
No 125
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=92.37 E-value=0.66 Score=46.26 Aligned_cols=123 Identities=14% Similarity=0.032 Sum_probs=84.0
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcCC--CCccCChhHHHHHH
Q 011352 166 FYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYL 243 (488)
Q Consensus 166 ~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~pe~~~~~~~v~Y~ 243 (488)
++.+.++...|+.+++...+..... .....+-+-...++.++|++.|+++.|.+.+++.. .|+.....+.+...
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~----~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGID----NDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHT----SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhc----cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence 5777788888999888876665521 11112344445567889999999999999998752 22222335666677
Q ss_pred HHHHHHHHHhh--cHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHhcCCCCCc
Q 011352 244 FYLGKIRTIQL--EYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPER 298 (488)
Q Consensus 244 YY~Gri~~~~~--dy~~A~~~L~~A~~~~P~~~~~~~~~alK~lIlv~LL~G~iP~~ 298 (488)
.-.|.+.+..+ +|.+|+..|+.+..++|...+.. ..+. +.+-+|++|..
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~--lLln----~~~~~g~~~eA 230 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQTFPTWKTQL--GLLN----LHLQQRNIAEA 230 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHH--HHHH----HHHHHTCHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHH--HHHH----HHHHcCCHHHH
Confidence 77788888888 99999999999988776411111 1111 56668998874
No 126
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=92.34 E-value=2.5 Score=38.43 Aligned_cols=62 Identities=8% Similarity=-0.082 Sum_probs=48.6
Q ss_pred HHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 208 LLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 208 llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
+-+.|++.++++.|....+.. .+|.+ .....-++..|.++...+++.+|..+|..+....|.
T Consensus 153 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 153 VAEYYTERGAWVAVVNRVEGMLRDYPDT---QATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTS---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHCcCC---CccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 345789999999998877764 34542 123345789999999999999999999999987665
No 127
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=92.26 E-value=0.3 Score=42.04 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=49.5
Q ss_pred HHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 208 LLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 208 llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
+-+.|++.++|+.|...+++. ..|.. ...++..|.++...++|.+|..+|..|+...|..
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 98 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQERD------PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQ 98 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC
Confidence 557899999999999988875 23332 3457899999999999999999999999977764
No 128
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=92.19 E-value=0.32 Score=38.78 Aligned_cols=60 Identities=18% Similarity=0.068 Sum_probs=47.2
Q ss_pred HHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 207 LLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 207 ~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
.+-..|+..|+++.|...+.+. ..|... ..++..|.++...++|.+|..+|..|+..+|.
T Consensus 12 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 12 ALAQEHLKHDNASRALALFEELVETDPDYV------GTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCT------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 3456788999999998877775 233322 25789999999999999999999999986554
No 129
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=91.87 E-value=0.68 Score=35.90 Aligned_cols=59 Identities=8% Similarity=0.058 Sum_probs=46.8
Q ss_pred HHHHccCCHHHHHHHHhcC--CCCccCChhHHHH-HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCccc
Q 011352 210 RNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCR-YLFYLGKIRTIQLEYTDAKESLLQAARKAPVAA 274 (488)
Q Consensus 210 r~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~-Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~~ 274 (488)
..|+..++++.|...+.+. ..|.. .. .++..|.++...++|.+|..+|..|+...|...
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 69 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVG------KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSST------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 4678889999998877764 22322 23 678899999999999999999999999888744
No 130
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=91.72 E-value=0.33 Score=53.04 Aligned_cols=128 Identities=16% Similarity=0.039 Sum_probs=83.3
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHH
Q 011352 123 LLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQE 202 (488)
Q Consensus 123 ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~ 202 (488)
+.....++..|+|++|.....++++. +.. .+.+|++...++...++.+++...+..+++.... ...
T Consensus 437 ~~~a~~~~~~g~~~~A~~~~~~al~~----~p~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~----~~~- 502 (681)
T 2pzi_A 437 LMEVRALLDLGDVAKATRKLDDLAER----VGW-----RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG----ELA- 502 (681)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH----HCC-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT----CSH-
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcc----Ccc-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChH-
Confidence 34445566778899988887766543 111 1234677778888889998888777777643211 111
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 203 TLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 203 ~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
..+.+-..|.+.|+++. ....++. ..|.. ...+|..|.++...++|.+|..+|..|+...|.
T Consensus 503 -~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 566 (681)
T 2pzi_A 503 -PKLALAATAELAGNTDE-HKFYQTVWSTNDGV------ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRH 566 (681)
T ss_dssp -HHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT
T ss_pred -HHHHHHHHHHHcCChHH-HHHHHHHHHhCCch------HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc
Confidence 11234456777888876 5555443 12321 234688999999999999999999999876554
No 131
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=91.52 E-value=5 Score=42.21 Aligned_cols=136 Identities=8% Similarity=-0.065 Sum_probs=90.7
Q ss_pred HHcccCHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHh--hhcCCcccHHHHH
Q 011352 129 LIDKKRYNEAKACSSASIARLKN-MNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIA--TLRHDELGQETLL 205 (488)
Q Consensus 129 l~d~~~~~~A~~~~~~lv~~l~~-~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta--~~~~~~~~~~~l~ 205 (488)
+-.+|+|++|..+..+.+..... +...-.+ .+.++.-.+.++...|+..++......++... ..-.+....+...
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~--~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLY--VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 44689999999998888776443 3222222 23334455666667889988888777776332 3333444456667
Q ss_pred HHHHHHHHccCCHHHHHHHHhcC------CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 011352 206 NLLLRNYLHYNLYDQAEKLRSKA------PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAAR 268 (488)
Q Consensus 206 n~llr~Yl~~~~~~~a~~li~~~------~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~ 268 (488)
|.|-..|...|.|+.|..+..++ .+...-| ....=.-.++..++.++.|++|...|..|-+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp--~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP--ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999999987775 1222211 2222235778888889999999988888754
No 132
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=91.22 E-value=1.5 Score=36.13 Aligned_cols=92 Identities=16% Similarity=-0.073 Sum_probs=59.7
Q ss_pred HHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHH
Q 011352 169 SLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYL 246 (488)
Q Consensus 169 s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~ 246 (488)
+.++-..++..++...+..+.+.. ..... ....+-..|...|+++.|...+.+. ..|.. ...++.+
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~----P~~~~--a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~l 91 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKE----PEREE--AWRSLGLTQAENEKDGLAIIALNHARMLDPKD------IAVHAAL 91 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS----TTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC----CCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Confidence 334445677777776666554322 11111 2223556788999999998877764 22322 2356899
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 247 GKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 247 Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
|.++...++|.+|..+|..++...|.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 92 AVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 99999999999999999999986554
No 133
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=91.04 E-value=5.8 Score=37.80 Aligned_cols=117 Identities=15% Similarity=0.031 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHcc
Q 011352 136 NEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHY 215 (488)
Q Consensus 136 ~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~ 215 (488)
++|..+....++.+ +... +.+|+.+..+.+..++.++++..+..+++. ...... .+.+.+...+.+.
T Consensus 81 ~~A~~~~~rAl~~~---~p~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~-~~~~~~~~~~~~~ 147 (308)
T 2ond_A 81 DEAANIYERAISTL---LKKN-----MLLYFAYADYEESRMKYEKVHSIYNRLLAI----EDIDPT-LVYIQYMKFARRA 147 (308)
T ss_dssp HHHHHHHHHHHTTT---TTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----SSSCTH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---Cccc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----cccCcc-HHHHHHHHHHHHh
Confidence 66666655554422 2221 123666777777889999888777776542 111111 1334445667788
Q ss_pred CCHHHHHHHHhcC-CC-CccCChhHHHHHHHHHHHHHHH---hhcHHHHHHHHHHHHHhCCcc
Q 011352 216 NLYDQAEKLRSKA-PR-FEAHSNQQFCRYLFYLGKIRTI---QLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 216 ~~~~~a~~li~~~-~~-pe~~~~~~~v~Y~YY~Gri~~~---~~dy~~A~~~L~~A~~~~P~~ 273 (488)
+.++.|..++.+. .. |.. +..|.|...+. .+++.+|...|..|+...|..
T Consensus 148 ~~~~~A~~~~~~a~~~~p~~--------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~ 202 (308)
T 2ond_A 148 EGIKSGRMIFKKAREDARTR--------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI 202 (308)
T ss_dssp HCHHHHHHHHHHHHTSTTCC--------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 9999999988775 22 322 12234554443 699999999999999987764
No 134
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=90.89 E-value=2.7 Score=36.99 Aligned_cols=93 Identities=14% Similarity=0.033 Sum_probs=65.1
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHH
Q 011352 165 YFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRY 242 (488)
Q Consensus 165 ~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y 242 (488)
++..+.++...++..++...+..+. ++ .....+.+-..|+..|+++.|.....+. ..|. ....
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-------~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------~~~~ 73 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-------DP--HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH------LAVA 73 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-------SC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-------CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------chHH
Confidence 4445555556777777765554441 11 1234445667889999999998877764 1232 2345
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 243 LFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 243 ~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
++..|.++...++|.+|..+|..|+...|.
T Consensus 74 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 103 (213)
T 1hh8_A 74 YFQRGMLYYQTEKYDLAIKDLKEALIQLRG 103 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Confidence 788999999999999999999999987776
No 135
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=90.84 E-value=3.8 Score=37.88 Aligned_cols=122 Identities=16% Similarity=0.090 Sum_probs=83.0
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHhhhcCCc
Q 011352 123 LLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYEL----TGDLAEIRGNLLALHRIATLRHDE 198 (488)
Q Consensus 123 ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~----~~~l~~~r~~L~~~~rta~~~~~~ 198 (488)
......+...+++++|..+..+.++ .+. +.+++....++.. .++..++...+..+... .+
T Consensus 10 ~~lg~~~~~~~~~~~A~~~~~~a~~----~~~-------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~- 73 (273)
T 1ouv_A 10 VGLGAKSYKEKDFTQAKKYFEKACD----LKE-------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----NY- 73 (273)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH----TTC-------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC-
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH----CCC-------HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----CC-
Confidence 3444555667899999998877766 111 1235566667777 77888777666655432 22
Q ss_pred ccHHHHHHHHHHHHHc----cCCHHHHHHHHhcCCCCccCChhHHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHh
Q 011352 199 LGQETLLNLLLRNYLH----YNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTI----QLEYTDAKESLLQAARK 269 (488)
Q Consensus 199 ~~~~~l~n~llr~Yl~----~~~~~~a~~li~~~~~pe~~~~~~~v~Y~YY~Gri~~~----~~dy~~A~~~L~~A~~~ 269 (488)
....+.+-..|.. .++++.|.....+..-.. ...-++.+|.++.. .+++.+|..+|..|+..
T Consensus 74 ---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 143 (273)
T 1ouv_A 74 ---SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL 143 (273)
T ss_dssp ---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc
Confidence 2222335567788 999999998877652211 23447789999999 99999999999999984
No 136
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=90.52 E-value=0.97 Score=36.21 Aligned_cols=62 Identities=18% Similarity=0.018 Sum_probs=48.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 205 LNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 205 ~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
...+-..|+..|+++.|...+.+. ..|.. ...++..|.++...++|.+|..+|..|+...|.
T Consensus 22 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 22 RFTLGKTYAEHEQFDAALPHLRAALDFDPTY------SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 344567889999999998877764 22322 345689999999999999999999999986665
No 137
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=90.50 E-value=2 Score=33.27 Aligned_cols=61 Identities=15% Similarity=-0.054 Sum_probs=47.4
Q ss_pred HHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 206 NLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 206 n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
..+-..|+..++++.|...+.+. ..|.. ...++..|.++...++|.+|..++..++...|.
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDPHN------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence 34556788899999998877774 22322 446788999999999999999999999986654
No 138
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=89.97 E-value=2.6 Score=33.80 Aligned_cols=62 Identities=16% Similarity=0.124 Sum_probs=48.3
Q ss_pred HHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 209 LRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 209 lr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
-..|+..|+++.|...+... ..|.+. .....+|..|.++...++|.+|..+|..++...|..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGV---YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH 72 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSST---THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCc---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence 45788999999998877764 234322 223557889999999999999999999999877753
No 139
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=89.95 E-value=1.8 Score=37.01 Aligned_cols=64 Identities=17% Similarity=-0.018 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 203 TLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 203 ~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
.....+-..|+..++|+.|...+.+. ..|. ...+++..|.++...++|.+|..+|..|+...|.
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 77 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPA------NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK 77 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 33445566888999999998877764 2232 2456788899999999999999999999986554
No 140
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=89.46 E-value=2.2 Score=33.63 Aligned_cols=61 Identities=16% Similarity=0.061 Sum_probs=47.0
Q ss_pred HHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 206 NLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 206 n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
..+-..|+..++++.|...+.+. ..|.. ...++..|.++...++|.+|..+|..++...|.
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELDPTN------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc
Confidence 34556788999999999877764 12321 356788999999999999999999999986553
No 141
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=89.40 E-value=2 Score=34.93 Aligned_cols=61 Identities=10% Similarity=-0.124 Sum_probs=47.8
Q ss_pred HHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 206 NLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 206 n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
..+-..|+..++++.|...+... ..|.. ...++..|.++...++|.+|..+|..|+...|.
T Consensus 13 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 75 (137)
T 3q49_B 13 KEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRALELDGQ 75 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhhCcCc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch
Confidence 34556788999999998877764 22322 356788999999999999999999999987665
No 142
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=89.29 E-value=1.7 Score=33.38 Aligned_cols=59 Identities=17% Similarity=0.028 Sum_probs=46.5
Q ss_pred HHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 208 LLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 208 llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
+-..|+..++++.|...+.+. ..|.. ...++..|.++...++|.+|..+|..++...|.
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLDPEE------SKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 445788999999998877764 22321 235678999999999999999999999986665
No 143
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=89.24 E-value=7.7 Score=34.61 Aligned_cols=115 Identities=10% Similarity=-0.084 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhh-h--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcC
Q 011352 120 YCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNR-R--TVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRH 196 (488)
Q Consensus 120 ~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~-r--~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~ 196 (488)
+.+.-.-..++..|+|++|..+..+.+.....+.. . ..+...+.+|.-.+.+....++.+++....-.++..
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l----- 86 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY----- 86 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----
Confidence 44444555667789999999999998877654200 0 112233335666677777777777665544444321
Q ss_pred CcccHHHHHHHHHHHHHccCCHHHHHHHHhcCC-CCccCChhHHHHHH----HHHHHHHHHhhcHHHHHHHHHHHHHhCC
Q 011352 197 DELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP-RFEAHSNQQFCRYL----FYLGKIRTIQLEYTDAKESLLQAARKAP 271 (488)
Q Consensus 197 ~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~-~pe~~~~~~~v~Y~----YY~Gri~~~~~dy~~A~~~L~~A~~~~P 271 (488)
.| +... .| +...-+ |..|..+...++|.+|..+|..|+...|
T Consensus 87 --------~n-------------------~~~e~~p------d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 87 --------FN-------------------RRGELNQ------DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp --------HH-------------------HHCCTTS------THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --------hh-------------------ccccCCC------chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 00 0001 11 223334 8999999999999999999999999777
Q ss_pred c
Q 011352 272 V 272 (488)
Q Consensus 272 ~ 272 (488)
.
T Consensus 134 ~ 134 (159)
T 2hr2_A 134 E 134 (159)
T ss_dssp H
T ss_pred C
Confidence 6
No 144
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=89.22 E-value=5.9 Score=35.45 Aligned_cols=63 Identities=13% Similarity=0.003 Sum_probs=51.0
Q ss_pred HHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCccc
Q 011352 206 NLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAA 274 (488)
Q Consensus 206 n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~~ 274 (488)
+.+-..|++.|+++.|...+.+. ..|.. ...++..|.++...++|.+|..+|..|+..-|...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 122 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNN------VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 34667899999999999887774 23432 35578899999999999999999999999888744
No 145
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=89.12 E-value=5.1 Score=39.75 Aligned_cols=193 Identities=11% Similarity=-0.007 Sum_probs=104.6
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhh---cCCcc
Q 011352 123 LLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATL---RHDEL 199 (488)
Q Consensus 123 ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~---~~~~~ 199 (488)
++..++.. .|++++|.++....+..-. +...++. +.....++-..|+...++..+-...+ ..+ -.+..
T Consensus 105 ~la~i~~~-~g~~eeAL~~l~~~i~~~~--~~~~lea-----~~l~vqi~L~~~r~d~A~k~l~~~~~-~~~d~~~~~d~ 175 (310)
T 3mv2_B 105 LLATAQAI-LGDLDKSLETCVEGIDNDE--AEGTTEL-----LLLAIEVALLNNNVSTASTIFDNYTN-AIEDTVSGDNE 175 (310)
T ss_dssp HHHHHHHH-HTCHHHHHHHHHHHHTSSC--STTHHHH-----HHHHHHHHHHTTCHHHHHHHHHHHHH-HSCHHHHHHHH
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHhccCC--CcCcHHH-----HHHHHHHHHHCCCHHHHHHHHHHHHh-cCccccccchH
Confidence 44444444 6999999988766532110 0122222 23445555578888888877765532 211 00112
Q ss_pred cHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc----
Q 011352 200 GQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA---- 273 (488)
Q Consensus 200 ~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~---- 273 (488)
....++...+......+.+..|-.++... .+|+. ....+ .|. .++.+++|.+|...|..+....|..
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~--~~~~l---Lln--~~~~~g~~~eAe~~L~~l~~~~p~~~~k~ 248 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQTFPTW--KTQLG---LLN--LHLQQRNIAEAQGIVELLLSDYYSVEQKE 248 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSH--HHHHH---HHH--HHHHHTCHHHHHHHHHHHHSHHHHTTTCH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCc--ccHHH---HHH--HHHHcCCHHHHHHHHHHHHHhcccccccc
Confidence 22222222222222334888887777763 33320 11122 222 7899999999999999766544431
Q ss_pred -chhhHHHHHHHHHHHHHhcCCCCCcchhcchhhhhhhhhHHHHHHHHhcCCHHHHHHHHHHcc
Q 011352 274 -ALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSVAEKFS 336 (488)
Q Consensus 274 -~~~~~~~alK~lIlv~LL~G~iP~~~ll~~~~l~~~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~ 336 (488)
+.+.--.++..+|.+...+|+ +...++.+- ..+.|=.+++.-+...+ ..|++++.+|.
T Consensus 249 ~~~p~~~~~LaN~i~l~~~lgk-~a~~l~~qL---~~~~P~hp~i~d~~~k~-~~Fd~~~~ky~ 307 (310)
T 3mv2_B 249 NAVLYKPTFLANQITLALMQGL-DTEDLTNQL---VKLDHEHAFIKHHQEID-AKFDELVRKYD 307 (310)
T ss_dssp HHHSSHHHHHHHHHHHHHHTTC-TTHHHHHHH---HHTTCCCHHHHHHHHHH-HHHHHHHHTCC
T ss_pred cCCCCCHHHHHHHHHHHHHhCh-HHHHHHHHH---HHhCCCChHHHHHHHHH-HHHHHHHHHhc
Confidence 123446778888999999998 332222221 12233344555554432 57888888775
No 146
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=88.92 E-value=12 Score=35.70 Aligned_cols=135 Identities=10% Similarity=-0.018 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhh
Q 011352 114 LPELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIAT 193 (488)
Q Consensus 114 ~p~~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~ 193 (488)
.|+...=...+....++..|++++|..... .-+...+.. +..+...+...++..++...+-......
T Consensus 29 ~p~~~~e~~~~l~r~yi~~g~~~~al~~~~-------~~~~~~~~a-----~~~la~~~~~~~~~~~A~~~l~~ll~~~- 95 (291)
T 3mkr_A 29 SPERDVERDVFLYRAYLAQRKYGVVLDEIK-------PSSAPELQA-----VRMFAEYLASHSRRDAIVAELDREMSRS- 95 (291)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCHHHHHHHSC-------TTSCHHHHH-----HHHHHHHHHCSTTHHHHHHHHHHHHHSC-
T ss_pred CchhhHHHHHHHHHHHHHCCCHHHHHHHhc-------ccCChhHHH-----HHHHHHHHcCCCcHHHHHHHHHHHHhcc-
Confidence 344322233334456777888888775321 111111111 2222333334455555555444443211
Q ss_pred hcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcCCCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 194 LRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 194 ~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
.+.... .....+-..|...|+++.|...+.+ |. ....++..|.++...+++.+|..+|..++...|..
T Consensus 96 -~~P~~~--~~~~~la~~~~~~g~~~~Al~~l~~---~~------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~ 163 (291)
T 3mkr_A 96 -VDVTNT--TFLLMAASIYFYDQNPDAALRTLHQ---GD------SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA 163 (291)
T ss_dssp -CCCSCH--HHHHHHHHHHHHTTCHHHHHHHHTT---CC------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred -cCCCCH--HHHHHHHHHHHHCCCHHHHHHHHhC---CC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc
Confidence 011111 2223344678899999999988887 21 12346678999999999999999999999876653
No 147
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=88.55 E-value=6.6 Score=39.62 Aligned_cols=118 Identities=4% Similarity=-0.122 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCC-HHHHHHHHhcC--CCCccCChhHH
Q 011352 163 RLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNL-YDQAEKLRSKA--PRFEAHSNQQF 239 (488)
Q Consensus 163 k~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~-~~~a~~li~~~--~~pe~~~~~~~ 239 (488)
.+|++...++...++..++...+..+.+.. ... ....+.+-.+|...|. ++.|...+.+. ..|.+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~----P~~--~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~------ 165 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN----AAN--YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN------ 165 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC----TTC--HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC----ccC--HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC------
Confidence 345666666667777777766666555322 111 2233445557788897 99998887775 23332
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHhcCCCCC
Q 011352 240 CRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPE 297 (488)
Q Consensus 240 v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~~~~~~~~alK~lIlv~LL~G~iP~ 297 (488)
...+++.|.++...++|.+|..+|..|+..-|..... +-.+-.+-.-+|+...
T Consensus 166 ~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a-----~~~lg~~~~~~g~~~e 218 (382)
T 2h6f_A 166 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA-----WQHRQWVIQEFKLWDN 218 (382)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHH-----HHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHH-----HHHHHHHHHHcCChHH
Confidence 3447899999999999999999999999977764322 2222233333677665
No 148
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=88.48 E-value=1.6 Score=36.35 Aligned_cols=57 Identities=16% Similarity=0.075 Sum_probs=42.9
Q ss_pred HHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 210 RNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 210 r~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
..|++.|+|+.|....++. ..|.. ...++..|.++...++|.+|..+|..|+..-|.
T Consensus 21 ~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 79 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAVKRDPEN------AILYSNRAACLTKLMEFQRALDDCDTCIRLDSK 79 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence 4678889999988877664 22321 345778899999999999999999999875554
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=88.37 E-value=2.9 Score=33.69 Aligned_cols=60 Identities=15% Similarity=0.063 Sum_probs=46.7
Q ss_pred HHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 208 LLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 208 llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
.-..|++.++|+.|.....+. ..|.. ...++..|.++...++|.+|..+|..|+...|..
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 71 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 345788999999998877764 22322 3567889999999999999999999999876653
No 150
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=88.28 E-value=1.5 Score=36.41 Aligned_cols=57 Identities=7% Similarity=-0.018 Sum_probs=44.9
Q ss_pred HHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 210 RNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 210 r~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
..|++.|+|+.|.....+. ..|.. ..+++..|.++...++|.+|..++..|+...|.
T Consensus 16 ~~~~~~~~~~~A~~~y~~Al~~~p~~------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~ 74 (127)
T 4gcn_A 16 NAAYKQKDFEKAHVHYDKAIELDPSN------ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE 74 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc
Confidence 4678899999998877764 22322 456788999999999999999999999985554
No 151
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=88.22 E-value=14 Score=33.96 Aligned_cols=115 Identities=16% Similarity=0.015 Sum_probs=75.8
Q ss_pred ccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHhhhcCCcccHHHHHHH
Q 011352 132 KKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYEL----TGDLAEIRGNLLALHRIATLRHDELGQETLLNL 207 (488)
Q Consensus 132 ~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~----~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~ 207 (488)
.+++++|..+..+.++. + .+.+++..+.++.. .++..++...+..+.. ..+... .+.
T Consensus 91 ~~~~~~A~~~~~~a~~~----~-------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~a----~~~ 151 (273)
T 1ouv_A 91 SQNTNKALQYYSKACDL----K-------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDG----CTI 151 (273)
T ss_dssp CCCHHHHHHHHHHHHHT----T-------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHH----HHH
T ss_pred ccCHHHHHHHHHHHHHc----C-------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh----cCcHHH----HHH
Confidence 78999998887766543 1 11235566666666 6777777766655543 222222 223
Q ss_pred HHHHHHc----cCCHHHHHHHHhcCCCCccCChhHHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHhCC
Q 011352 208 LLRNYLH----YNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTI----QLEYTDAKESLLQAARKAP 271 (488)
Q Consensus 208 llr~Yl~----~~~~~~a~~li~~~~~pe~~~~~~~v~Y~YY~Gri~~~----~~dy~~A~~~L~~A~~~~P 271 (488)
+-..|.. .++++.|...+.+..-.. ...-++..|.++.. .++|.+|..+|..|+..-|
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 4456666 889999988777642111 12346789999999 9999999999999998533
No 152
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=88.21 E-value=3.8 Score=43.15 Aligned_cols=92 Identities=12% Similarity=0.009 Sum_probs=70.5
Q ss_pred hccHHHHHHHHHHHHHHh--hhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC------CCCccCChhHHHHHHHHH
Q 011352 175 TGDLAEIRGNLLALHRIA--TLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA------PRFEAHSNQQFCRYLFYL 246 (488)
Q Consensus 175 ~~~l~~~r~~L~~~~rta--~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~------~~pe~~~~~~~v~Y~YY~ 246 (488)
.|+..++...+..++... .+-.+....+...|.|...|...|.|+.|..+..++ .+++ ...+.+.-++-+
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~--~Hp~~a~~l~nL 399 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH--NNAQLGMAVMRA 399 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT--TCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHH
Confidence 567777777777776433 333444556777788999999999999999987775 1222 234577778899
Q ss_pred HHHHHHhhcHHHHHHHHHHHHH
Q 011352 247 GKIRTIQLEYTDAKESLLQAAR 268 (488)
Q Consensus 247 Gri~~~~~dy~~A~~~L~~A~~ 268 (488)
|.+|..+|+|.+|..+|.+|+.
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999986
No 153
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=88.21 E-value=7.8 Score=30.18 Aligned_cols=119 Identities=13% Similarity=-0.069 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcC
Q 011352 117 LEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRH 196 (488)
Q Consensus 117 ~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~ 196 (488)
.+...+......++..+++++|..+....+..- ... +.+++..+.++...++..++...+..+.....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--- 77 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN----PAN-----AVYFCNRAAAYSKLGNYAGAVQDCERAICIDP--- 77 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC----CCC-----HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc---
Confidence 344444555566667899999998877776531 111 23456677777788888888877777765321
Q ss_pred CcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcH
Q 011352 197 DELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEY 256 (488)
Q Consensus 197 ~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy 256 (488)
.. ......+-..|...+.++.|...+.+. ..|.. ...++..|.++...++|
T Consensus 78 -~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 78 -AY--SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN------ETYKSNLKIAELKLREA 130 (131)
T ss_dssp -TC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHTTC
T ss_pred -cC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc------hHHHHHHHHHHHHHhcC
Confidence 11 122344556889999999999887764 22321 23466788888777664
No 154
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=88.17 E-value=3.4 Score=32.09 Aligned_cols=64 Identities=23% Similarity=0.178 Sum_probs=48.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 204 LLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 204 l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
....+-..|+..+.++.|...+... ..|.. ...++..|.++...++|.+|..+|..++...|..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 76 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc
Confidence 3344567888999999998877764 22321 3456788999999999999999999999866543
No 155
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=88.16 E-value=1.6 Score=45.41 Aligned_cols=91 Identities=10% Similarity=-0.004 Sum_probs=68.7
Q ss_pred ccHHHHHHHHHHHHHHh--hhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC------CCCccCChhHHHHHHHHHH
Q 011352 176 GDLAEIRGNLLALHRIA--TLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA------PRFEAHSNQQFCRYLFYLG 247 (488)
Q Consensus 176 ~~l~~~r~~L~~~~rta--~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~------~~pe~~~~~~~v~Y~YY~G 247 (488)
++..++...+..++... .+-.+....+...|.|...|...|+|+.|..+..++ .+++ ...+.+.-++-+|
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~--~Hp~~a~~l~nLa 389 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV--YSLNVASMWLKLG 389 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS--SCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC--CChHHHHHHHHHH
Confidence 45666666666666432 333444556677788999999999999999987775 1222 2346677788999
Q ss_pred HHHHHhhcHHHHHHHHHHHHH
Q 011352 248 KIRTIQLEYTDAKESLLQAAR 268 (488)
Q Consensus 248 ri~~~~~dy~~A~~~L~~A~~ 268 (488)
.+|..+|+|.+|..+|.+|+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999999986
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.01 E-value=4 Score=33.17 Aligned_cols=69 Identities=13% Similarity=-0.051 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 202 ETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 202 ~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
......+-..|+..++++.|...+.+. ..|. .......++..|.++...++|.+|..+|..++...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 98 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDAT---PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc---chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC
Confidence 344455667899999999999988775 2232 23356778899999999999999999999999866643
No 157
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=87.87 E-value=3 Score=33.16 Aligned_cols=61 Identities=16% Similarity=0.048 Sum_probs=47.5
Q ss_pred HHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 206 NLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 206 n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
..+-..|+..++++.|...+.+. ..|.. ...++..|.++...++|.+|..+|..++...|.
T Consensus 20 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 82 (133)
T 2lni_A 20 KNKGNECFQKGDYPQAMKHYTEAIKRNPKD------AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT 82 (133)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHTTCTTC------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 34556788999999998877774 23322 455788999999999999999999999986664
No 158
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=87.78 E-value=1.9 Score=35.47 Aligned_cols=59 Identities=15% Similarity=-0.089 Sum_probs=46.6
Q ss_pred HHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 209 LRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 209 lr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
-..|++.|.++.|...+.+. ..|.. ...+|.+|.++...++|.+|..+|..|+...|..
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 84 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD 84 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 35678899999998877775 23332 3457899999999999999999999999877764
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=87.75 E-value=3.2 Score=34.68 Aligned_cols=60 Identities=23% Similarity=0.116 Sum_probs=47.7
Q ss_pred HHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 208 LLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 208 llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
+-..|+..|+++.|...+.+. ..|. ...+++..|.++...++|.+|..+|..|+...|..
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLDHY------DARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 445788999999999887764 2232 23567889999999999999999999999876654
No 160
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=87.43 E-value=3.2 Score=35.42 Aligned_cols=60 Identities=20% Similarity=0.117 Sum_probs=47.4
Q ss_pred HHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 208 LLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 208 llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
+-..|+..|+++.|...+.+. ..|. ...+++..|.++...++|.+|..+|..|+...|..
T Consensus 27 ~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 88 (148)
T 2vgx_A 27 LAFNQYQSGXYEDAHXVFQALCVLDHY------DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCcc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 456788999999998877764 2232 23557889999999999999999999999876654
No 161
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=87.41 E-value=19 Score=34.12 Aligned_cols=126 Identities=10% Similarity=-0.002 Sum_probs=78.7
Q ss_pred HHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHH
Q 011352 125 VLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETL 204 (488)
Q Consensus 125 ~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l 204 (488)
....+...|++++|.+....+++ .+....+. +|..+..+....+++.+++..+..+.... .....+.+
T Consensus 105 ~~~~~~~~~~~~~A~~~~~~al~----~~p~~~~~----~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----p~~~~~~~ 172 (308)
T 2ond_A 105 YADYEESRMKYEKVHSIYNRLLA----IEDIDPTL----VYIQYMKFARRAEGIKSGRMIFKKAREDA----RTRHHVYV 172 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT----SSSSCTHH----HHHHHHHHHHHHHCHHHHHHHHHHHHTST----TCCTHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHh----ccccCccH----HHHHHHHHHHHhcCHHHHHHHHHHHHhcC----CCCHHHHH
Confidence 33445567899999888777664 22211111 35555666666788888877666665322 11222332
Q ss_pred HHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Q 011352 205 LNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARK 269 (488)
Q Consensus 205 ~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~ 269 (488)
.. ....+...|.++.|..+..+. .+|.. ..++.-.|.++...|++.+|...|..|+..
T Consensus 173 ~~-a~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 173 TA-ALMEYYCSKDKSVAFKIFELGLKKYGDI------PEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HH-HHHHHHTSCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HH-HHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 22 111233479999999887775 33432 345566788888899999999999999985
No 162
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=87.14 E-value=9.8 Score=37.87 Aligned_cols=138 Identities=14% Similarity=0.034 Sum_probs=82.4
Q ss_pred HcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhc---CCcccHHHHHH
Q 011352 130 IDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLR---HDELGQETLLN 206 (488)
Q Consensus 130 ~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~---~~~~~~~~l~n 206 (488)
...|+|++|.++..+.++.++.......+.-.+..|.-.+.++...|+..++...+-.+....... ..........+
T Consensus 62 ~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~ 141 (472)
T 4g1t_A 62 HLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHH
Confidence 456999999999998887766542221122122235556667778899888877777666443221 11122222222
Q ss_pred H-HHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHH---hhcHHHHHHHHHHHHHhCCcc
Q 011352 207 L-LLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTI---QLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 207 ~-llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~---~~dy~~A~~~L~~A~~~~P~~ 273 (488)
. ....++..++|+.|.....+. ..|++ ..+++..|.++.. .+++.+|.+.|..|+...|..
T Consensus 142 ~g~~~~~~~~~~y~~A~~~~~kal~~~p~~------~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 142 EGWTRLKCGGNQNERAKVCFEKALEKKPKN------PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 1 223455667899998877775 22332 1234445555443 456788999999999876764
No 163
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=86.52 E-value=11 Score=40.84 Aligned_cols=126 Identities=12% Similarity=-0.095 Sum_probs=74.1
Q ss_pred HcccCHHHHHHHHHHHHHH-HH---hhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHH
Q 011352 130 IDKKRYNEAKACSSASIAR-LK---NMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLL 205 (488)
Q Consensus 130 ~d~~~~~~A~~~~~~lv~~-l~---~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~ 205 (488)
+..+++++|.+...+.++. +. ..+... +.+|+..+.++-..++..++...+..+..... .. ....
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~-----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p----~~--~~a~ 470 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSES-----VELPLMEVRALLDLGDVAKATRKLDDLAERVG----WR--WRLV 470 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTC-----SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC----CC--HHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccc-----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc----ch--HHHH
Confidence 7789999999887776621 10 111121 12245556666677888877776666654221 11 1122
Q ss_pred HHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 206 NLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 206 n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
+.+-..|+..|+++.|...+.+. ..|.. ...++..|.++...++|.+ ..+|..|+..-|..
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~ 533 (681)
T 2pzi_A 471 WYRAVAELLTGDYDSATKHFTEVLDTFPGE------LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV 533 (681)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch
Confidence 23334567778888777766654 22322 2335677778888888888 77888887765653
No 164
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=86.36 E-value=3.8 Score=35.61 Aligned_cols=61 Identities=15% Similarity=0.104 Sum_probs=48.8
Q ss_pred HHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCccc
Q 011352 208 LLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAA 274 (488)
Q Consensus 208 llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~~ 274 (488)
+-..|++.|+|+.|...+++. ..|. ...+++..|.++...++|.+|..+|..|+...|..+
T Consensus 42 lg~~~~~~g~~~eA~~~~~~al~~~P~------~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 42 YAYDFYNKGRIEEAEVFFRFLCIYDFY------NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 445788999999999988775 2232 244688899999999999999999999999777643
No 165
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=85.89 E-value=2.2 Score=41.97 Aligned_cols=60 Identities=18% Similarity=0.165 Sum_probs=42.8
Q ss_pred HHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 207 LLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 207 ~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
.+-.+|++.++|+.|...+.+. ..|. ....+|..|.++...++|.+|..+|..|+...|.
T Consensus 235 nla~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~ 296 (338)
T 2if4_A 235 NIAACLIKLKRYDEAIGHCNIVLTEEEK------NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296 (338)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 3445788888888888776664 1232 2345789999999999999999999999876564
No 166
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=85.77 E-value=7.8 Score=38.61 Aligned_cols=109 Identities=13% Similarity=-0.004 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHhhhc---CCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC-----CCCccCC
Q 011352 164 LYFYYSLCYELTGDLAEIRGNLLALHRIATLR---HDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA-----PRFEAHS 235 (488)
Q Consensus 164 ~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~---~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~-----~~pe~~~ 235 (488)
+|...+.++...|+.+++...+..+....... +.....+...+.+-..|...|+++.|.....++ .++....
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 34555667778888888888877776443222 122233444455677899999999998876664 1111111
Q ss_pred hhHHHHHHHHHHHHH--HHhhcHHHHHHHHHHHHHhCCcc
Q 011352 236 NQQFCRYLFYLGKIR--TIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 236 ~~~~v~Y~YY~Gri~--~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
. .....+...|..+ ...++|.+|..+|..|+...|..
T Consensus 133 ~-~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~ 171 (472)
T 4g1t_A 133 I-ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN 171 (472)
T ss_dssp C-CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC
T ss_pred h-hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC
Confidence 1 1122234455443 44679999999999999987763
No 167
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=85.75 E-value=24 Score=33.23 Aligned_cols=96 Identities=15% Similarity=-0.019 Sum_probs=68.3
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcCC--CCccCChhHHHHH
Q 011352 165 YFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRY 242 (488)
Q Consensus 165 ~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~pe~~~~~~~v~Y 242 (488)
++-.+..+...++..++...+..+.... ... ..+...+-..|++.|+++.|.....+.. .|. ....
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~ 74 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRN----PLV--AVYYTNRALCYLKMQQPEQALADCRRALELDGQ------SVKA 74 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC----SCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT------CHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC----Ccc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHH
Confidence 3444555556788888877776665432 111 2333445678999999999999877752 232 2345
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 243 LFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 243 ~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
+|..|.++...++|.+|..+|..|+...|.
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQRAYSLAKE 104 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 789999999999999999999999987775
No 168
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=85.18 E-value=6.1 Score=43.64 Aligned_cols=100 Identities=12% Similarity=-0.011 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHH
Q 011352 162 ARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQF 239 (488)
Q Consensus 162 ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~ 239 (488)
+.+|.....++...|+++++...+..++... ... ....+.+-..|.+.|+++.|....++. ..|+ .
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~----P~~--~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~------~ 76 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF----PEF--AAAHSNLASVLQQQGKLQEALMHYKEAIRISPT------F 76 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------C
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------C
Confidence 3446667777888899998887776665422 111 122334556789999999999877764 2232 2
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 240 CRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 240 v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
...++.+|.++...++|.+|..+|..|+...|..
T Consensus 77 ~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~ 110 (723)
T 4gyw_A 77 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 110 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 3457889999999999999999999999977764
No 169
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=84.21 E-value=2.6 Score=33.91 Aligned_cols=66 Identities=17% Similarity=-0.067 Sum_probs=48.7
Q ss_pred HHHHHHccCCHHHHHHHHhcC-C-C-CccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 208 LLRNYLHYNLYDQAEKLRSKA-P-R-FEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 208 llr~Yl~~~~~~~a~~li~~~-~-~-pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
|=+.++..+.|..|...+..+ . . ++..+.......++++|..+...|++.+|..++..|+..-|..
T Consensus 11 lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 11 LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 446788999999998876664 1 1 1111122334556899999999999999999999999888874
No 170
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=83.96 E-value=5.7 Score=34.93 Aligned_cols=65 Identities=9% Similarity=-0.018 Sum_probs=47.8
Q ss_pred HHHHHHccCCHHHHHHHHhcC--CCCccCC----------hhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 208 LLRNYLHYNLYDQAEKLRSKA--PRFEAHS----------NQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 208 llr~Yl~~~~~~~a~~li~~~--~~pe~~~----------~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
+-..|+..++|+.|.....+. ..|.... .......++..|.++...++|.+|..++..|+...|.
T Consensus 44 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 120 (198)
T 2fbn_A 44 EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 120 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 445788999999998877764 2232210 1112467888999999999999999999999986554
No 171
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=83.88 E-value=6.9 Score=30.10 Aligned_cols=95 Identities=8% Similarity=-0.150 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHH
Q 011352 163 RLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFC 240 (488)
Q Consensus 163 k~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v 240 (488)
..|+..+.++-..++..++...+..+.+.... . ......+-..|+..|+++.|...+.+. ..|...+.....
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 78 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ----N--PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT----C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----C--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 34555666666788888887777776643211 1 222344567899999999999887774 345544444566
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHH
Q 011352 241 RYLFYLGKIRTIQLEYTDAKESL 263 (488)
Q Consensus 241 ~Y~YY~Gri~~~~~dy~~A~~~L 263 (488)
..++..|.++...+++..|...|
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHH
Confidence 77888999999888877765443
No 172
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=83.72 E-value=10 Score=29.52 Aligned_cols=35 Identities=9% Similarity=-0.084 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCccc
Q 011352 240 CRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAA 274 (488)
Q Consensus 240 v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~~ 274 (488)
...+|..|.++...++|.+|..+|..|++..|...
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 41 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYV 41 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 34578999999999999999999999999777643
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=83.50 E-value=2 Score=44.70 Aligned_cols=115 Identities=14% Similarity=0.010 Sum_probs=70.5
Q ss_pred HHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHH
Q 011352 129 LIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLL 208 (488)
Q Consensus 129 l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~l 208 (488)
++..++|++|.++..+.++. +... +.+|+..+.++...++.+++...+..+.+. +... ....+.+
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~----~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----~p~~--~~~~~~l 80 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL----NPSN-----AIYYGNRSLAYLRTECYGYALGDATRAIEL----DKKY--IKGYYRR 80 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH----CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS----CTTC--HHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh----CCcc-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCC--HHHHHHH
Confidence 34678999999887777654 2221 334666777777888888887766666532 1111 2223345
Q ss_pred HHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHH--HHHhhcHHHHHHHHH
Q 011352 209 LRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKI--RTIQLEYTDAKESLL 264 (488)
Q Consensus 209 lr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri--~~~~~dy~~A~~~L~ 264 (488)
-..|...++++.|...+.+. ..|.... .++..|.+ +..+++|.+|...+.
T Consensus 81 g~~~~~~g~~~eA~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 81 AASNMALGKFRAALRDYETVVKVKPHDKD------AKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCTT------HHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66788899999998877764 2233222 23455666 777899999998888
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=83.01 E-value=10 Score=39.19 Aligned_cols=89 Identities=9% Similarity=-0.012 Sum_probs=63.4
Q ss_pred hhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHH
Q 011352 174 LTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRT 251 (488)
Q Consensus 174 ~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~ 251 (488)
..++.+++...+..+.... ... ....+.+-..|++.++++.|.....+. ..|. ....+|..|.++.
T Consensus 18 ~~g~~~~A~~~~~~Al~~~----p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~~~~~~lg~~~~ 85 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELN----PSN--AIYYGNRSLAYLRTECYGYALGDATRAIELDKK------YIKGYYRRAASNM 85 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHC----TTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------CHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC----Ccc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH
Confidence 3456677766666665432 111 333445667899999999999877775 2232 2345788999999
Q ss_pred HhhcHHHHHHHHHHHHHhCCccc
Q 011352 252 IQLEYTDAKESLLQAARKAPVAA 274 (488)
Q Consensus 252 ~~~dy~~A~~~L~~A~~~~P~~~ 274 (488)
..++|.+|..+|..|+...|...
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~ 108 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDK 108 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCT
T ss_pred HcCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999877643
No 175
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=82.81 E-value=2.8 Score=43.27 Aligned_cols=91 Identities=14% Similarity=0.054 Sum_probs=66.0
Q ss_pred ccHHHHHHHHHHHHHH--hhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC------CCCccCChhHHHHHHHHHH
Q 011352 176 GDLAEIRGNLLALHRI--ATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA------PRFEAHSNQQFCRYLFYLG 247 (488)
Q Consensus 176 ~~l~~~r~~L~~~~rt--a~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~------~~pe~~~~~~~v~Y~YY~G 247 (488)
+...++......++.. ..+-.+....+...|.+...|...|.|+.|..+..++ .+++ ...+.+.-++-+|
T Consensus 301 g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~--~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 301 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG--SHPVRGVQVMKVG 378 (429)
T ss_dssp TCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS--SCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC--CChHHHHHHHHHH
Confidence 4555555555555422 2233344456677788999999999999999987764 2332 2345677788999
Q ss_pred HHHHHhhcHHHHHHHHHHHHH
Q 011352 248 KIRTIQLEYTDAKESLLQAAR 268 (488)
Q Consensus 248 ri~~~~~dy~~A~~~L~~A~~ 268 (488)
.+|..+|+|.+|..+|.+|+.
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999999999986
No 176
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=82.28 E-value=38 Score=34.71 Aligned_cols=27 Identities=4% Similarity=-0.135 Sum_probs=14.0
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhCC
Q 011352 245 YLGKIRTIQLEYTDAKESLLQAARKAP 271 (488)
Q Consensus 245 Y~Gri~~~~~dy~~A~~~L~~A~~~~P 271 (488)
-.|.+....|++.+|...|..|+..+|
T Consensus 430 ~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 430 AYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 334444445556666666666555433
No 177
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=82.22 E-value=5.4 Score=34.48 Aligned_cols=125 Identities=9% Similarity=-0.089 Sum_probs=69.9
Q ss_pred HHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHH
Q 011352 126 LIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLL 205 (488)
Q Consensus 126 ~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~ 205 (488)
...++..|++++|......+++. ++=.+.+++..+.++...|+..++...+..+.+ ... .....
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~---------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~----~~p-~~~~~-- 76 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDE---------LQSRGDVKLAKADCLLETKQFELAQELLATIPL----EYQ-DNSYK-- 76 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHH---------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG----GGC-CHHHH--
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH---------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh----ccC-ChHHH--
Confidence 34456789999988876555432 111223356667777778888877665544422 111 11111
Q ss_pred HHHHHHH-HccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 206 NLLLRNY-LHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 206 n~llr~Y-l~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
+.....+ ...+....|...+.+. ..|.+ ...+|..|.++...|+|.+|..+|..+++..|.
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 77 SLIAKLELHQQAAESPELKRLEQELAANPDN------FELACELAVQYNQVGRDEEALELLWNILKVNLG 140 (176)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 1111111 1111111122222221 12321 345788999999999999999999999987765
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=81.64 E-value=29 Score=34.50 Aligned_cols=128 Identities=13% Similarity=0.013 Sum_probs=87.1
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHHHHhhh-------hhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhc
Q 011352 123 LLVLIFLIDKKRYNEAKACSSASIARLKNMN-------RRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLR 195 (488)
Q Consensus 123 ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~-------~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~ 195 (488)
.-....++..++|++|..+..++++.+.... ...++...+.+|+..+.++...++..++...+..++...
T Consensus 227 ~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--- 303 (370)
T 1ihg_A 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID--- 303 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC---
Confidence 3444556678999999999998887654321 112455666778888899989999988887776665421
Q ss_pred CCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHH
Q 011352 196 HDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKES 262 (488)
Q Consensus 196 ~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~ 262 (488)
... ......+-..|...++++.|...+.+. ..|.. ....+..+.++...+++.+|...
T Consensus 304 -p~~--~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~------~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 304 -PSN--TKALYRRAQGWQGLKEYDQALADLKKAQEIAPED------KAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp -TTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -chh--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 222334556889999999999877765 22321 23466788888888888888644
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=80.89 E-value=3.9 Score=34.75 Aligned_cols=65 Identities=11% Similarity=0.046 Sum_probs=46.1
Q ss_pred HHHHHccCCHHHHHHHHhcC-CC------CccCC-------hhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 209 LRNYLHYNLYDQAEKLRSKA-PR------FEAHS-------NQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 209 lr~Yl~~~~~~~a~~li~~~-~~------pe~~~-------~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
=..|++.+.|+.|.....+. .. ++..+ .......++..|.++...++|.+|..++..|+...|..
T Consensus 18 G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~ 96 (162)
T 3rkv_A 18 GNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETN 96 (162)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc
Confidence 34677888888887755553 11 01111 34456778899999999999999999999999865553
No 180
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=80.66 E-value=3.1 Score=39.41 Aligned_cols=116 Identities=16% Similarity=0.072 Sum_probs=68.7
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHcchhhhcCcchHHHHHHHHHHHHHhHHHHHHhhccccHHHHHHHhcCCCCCChHH
Q 011352 310 LRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVAD 389 (488)
Q Consensus 310 l~~Y~~L~~Av~~Gdl~~f~~~l~~~~~~f~~D~~~~Lv~rLr~~vir~~ir~i~~~YsrIsL~dIa~~L~l~~~~d~ee 389 (488)
+..-..|.+...+|+..+|=+.+....+.+ ..+..+...+.+.-..-+..+|++|++++++..||..++ ++
T Consensus 99 I~~i~~L~~~L~~~~y~~fW~~l~~~~~l~------~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~---~e 169 (226)
T 1rz4_A 99 IRQILYLGDLLETCHFQAFWQALDENMDLL------EGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSD---SQ 169 (226)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSCTTCHHH------HTSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCH---HH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcChhHH------HHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCH---HH
Confidence 444467888999999988887765432211 112223333444446778999999999999999975454 78
Q ss_pred HHHHHHHHHHcCCcceEeeCCCcEEEEcccC-----cccCCccccHHHHHHHHHHHH
Q 011352 390 AESIVSKAIRDGAIDATVDHANGWMVSKETG-----DIYSTNEPQLAFNSRIAFCLN 441 (488)
Q Consensus 390 aE~ila~mI~dG~I~A~Id~~~G~v~~~~~~-----dv~s~~ep~~~l~~rI~~~l~ 441 (488)
++..+.+- |.- +| ++|.|.+.+.. -+...+=+|..+.+-|+.|.-
T Consensus 170 l~~fi~~~---GW~---vd-~~g~I~~~n~e~~~k~~~~~E~i~~~~~~~~~~~~~~ 219 (226)
T 1rz4_A 170 LKVWMSKY---GWS---AD-ESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASSQL 219 (226)
T ss_dssp HHHHHHHH---TCE---EC-C--CEECCCHHHHTSCCCSSCCCCHHHHHHHHCC---
T ss_pred HHHHHHHC---CCE---EC-CCccEEeCCCcccccceeeeecccHHHHHHHHHHHHH
Confidence 88777762 642 33 34555443321 123333466666666666543
No 181
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=80.61 E-value=4.3 Score=31.53 Aligned_cols=49 Identities=16% Similarity=0.316 Sum_probs=42.5
Q ss_pred hhccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCCcEEEEcc
Q 011352 366 SYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKE 418 (488)
Q Consensus 366 ~YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~G~v~~~~ 418 (488)
.-.-++|.++|..+++.. +++-.-|-.+..+|.|.|.||-...||...+
T Consensus 18 ~~Kvv~LedLA~~F~l~t----~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~ 66 (72)
T 1wi9_A 18 KSKVVLLEDLAFQMGLRT----QDAINRIQDLLTEGTLTGVIDDRGKFIYITP 66 (72)
T ss_dssp HCSEECHHHHHHHHCSCH----HHHHHHHHHHHHHSSSCEEECTTCCEEECCC
T ss_pred HcCeeeHHHHHHHhCCCh----HHHHHHHHHHHHCCCeEEEEeCCCCEEEecH
Confidence 346689999999999998 8999999999999999999998777776553
No 182
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=80.27 E-value=25 Score=31.35 Aligned_cols=119 Identities=14% Similarity=0.058 Sum_probs=74.0
Q ss_pred HHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHhhhcCCcccHHHH
Q 011352 129 LIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTG----DLAEIRGNLLALHRIATLRHDELGQETL 204 (488)
Q Consensus 129 l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~----~l~~~r~~L~~~~rta~~~~~~~~~~~l 204 (488)
+...+++++|..+..+.++. -+ +..++.+..++.. + +..++...+..+ ....+...+..
T Consensus 28 ~~~~~~~~~A~~~~~~a~~~---g~--------~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A----~~~g~~~a~~~- 90 (212)
T 3rjv_A 28 WVSSGDYQKAEYWAQKAAAQ---GD--------GDALALLAQLKIR-NPQQADYPQARQLAEKA----VEAGSKSGEIV- 90 (212)
T ss_dssp HHHHTCHHHHHHHHHHHHHT---TC--------HHHHHHHHHHTTS-STTSCCHHHHHHHHHHH----HHTTCHHHHHH-
T ss_pred HhcCCCHHHHHHHHHHHHHc---CC--------HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH----HHCCCHHHHHH-
Confidence 34478999999987776542 11 1223444555544 4 566665555444 33333333333
Q ss_pred HHHHHHHHHc----cCCHHHHHHHHhcCCCCccCChhHHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHh
Q 011352 205 LNLLLRNYLH----YNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTI----QLEYTDAKESLLQAARK 269 (488)
Q Consensus 205 ~n~llr~Yl~----~~~~~~a~~li~~~~~pe~~~~~~~v~Y~YY~Gri~~~----~~dy~~A~~~L~~A~~~ 269 (488)
+-..|.. .++++.|.....+..--. +......=+|.+|.+|.. .+|+.+|..+|..|...
T Consensus 91 ---Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 91 ---LARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp ---HHHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred ---HHHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 3345666 789999998887752111 001234447789999998 88999999999999984
No 183
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=80.24 E-value=3.5 Score=31.12 Aligned_cols=41 Identities=5% Similarity=0.215 Sum_probs=34.8
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCCcEEE
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMV 415 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~G~v~ 415 (488)
..++.++||..++++. ..+..+|..|...|+|.. +..||..
T Consensus 24 ~~~s~~eLA~~lglsr----~tv~~~l~~L~~~G~I~~---~~~G~y~ 64 (67)
T 2heo_A 24 GPVAIFQLVKKCQVPK----KTLNQVLYRLKKEDRVSS---PSPKYWS 64 (67)
T ss_dssp SCEEHHHHHHHHCSCH----HHHHHHHHHHHHTTSEEE---EETTEEE
T ss_pred CCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCcEec---CCCceEe
Confidence 5699999999999998 899999999999999854 3356654
No 184
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=79.45 E-value=26 Score=35.94 Aligned_cols=101 Identities=12% Similarity=0.024 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC-CCCccCChhHHHH
Q 011352 163 RLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA-PRFEAHSNQQFCR 241 (488)
Q Consensus 163 k~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~-~~pe~~~~~~~v~ 241 (488)
.+|+.+....+..|+.++++..+-.++... +.....+.+...+.+.+.+.++.|..++.+. ..|.... -.
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~----~~ 392 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLAIE-----DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH----HV 392 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-----SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCT----HH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-----ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCch----HH
Confidence 346777778888899999988777775421 1111123344455566788899999888875 3222211 11
Q ss_pred HHHHHHHH-HHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 242 YLFYLGKI-RTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 242 Y~YY~Gri-~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
|. -.|.+ +...+++.+|...|+.|+..+|..
T Consensus 393 ~~-~~a~~~~~~~~~~~~A~~~~e~al~~~p~~ 424 (530)
T 2ooe_A 393 YV-TAALMEYYCSKDKSVAFKIFELGLKKYGDI 424 (530)
T ss_dssp HH-HHHHHHHHHTCCHHHHHHHHHHHHHHHTTC
T ss_pred HH-HHHHHHHHHcCChhHHHHHHHHHHHHCCCC
Confidence 11 12222 335899999999999999987754
No 185
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=78.21 E-value=5 Score=36.29 Aligned_cols=61 Identities=21% Similarity=0.156 Sum_probs=48.8
Q ss_pred HHHHHccCCHHHHHHHHhc----C-CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Q 011352 209 LRNYLHYNLYDQAEKLRSK----A-PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARK 269 (488)
Q Consensus 209 lr~Yl~~~~~~~a~~li~~----~-~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~ 269 (488)
.+..+..+.|+.|..+-+. . ..|+.+++.+..+-++|.|-.+..+++|.+|..+|.+|+..
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3566777888877665444 2 23556789999999999999999999999999999999853
No 186
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=78.16 E-value=4.5 Score=36.00 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 237 QQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 237 ~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
.+.-.|+||+|.-++..++|.+|.+++..+++.-|.
T Consensus 68 ~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 68 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred cchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 466788999999999999999999999999997664
No 187
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=77.96 E-value=27 Score=32.87 Aligned_cols=130 Identities=11% Similarity=-0.049 Sum_probs=75.4
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHH
Q 011352 123 LLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQE 202 (488)
Q Consensus 123 ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~ 202 (488)
+.....++..|++++|......++.. +.... .+++..+.++...|+..++...+..+.+. ++....
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~----~P~~~-----~a~~~la~~~~~~g~~~~A~~~l~~~~~~-----~p~~~~ 186 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQL----SNQNG-----EIGLLLAETLIALNRSEDAEAVLXTIPLQ-----DQDTRY 186 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----TTSCH-----HHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----GCSHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh----CCcch-----hHHHHHHHHHHHCCCHHHHHHHHHhCchh-----hcchHH
Confidence 33444556778999888776555432 22211 22455666777788888887655544321 111111
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 203 TLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 203 ~l~n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
...+ ....+...+..+.|...+.+. ..|+ ....+|.+|.++...++|.+|...|..+++.-|..
T Consensus 187 ~~~~-~~~~l~~~~~~~~a~~~l~~al~~~P~------~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 187 QGLV-AQIELLXQAADTPEIQQLQQQVAENPE------DAALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHH-HHHHHHHHHTSCHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred HHHH-HHHHHHhhcccCccHHHHHHHHhcCCc------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 1111 112234445555454433332 2232 23447889999999999999999999999976753
No 188
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=77.92 E-value=5.9 Score=29.30 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 238 QFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 238 ~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
.....++..|.++...++|.+|..+|..|+...|..
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 42 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 42 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 456678899999999999999999999999876653
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=77.71 E-value=8.5 Score=30.71 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 237 QQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 237 ~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
......++.+|.++...++|.+|..+|..|+...|..
T Consensus 24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 60 (117)
T 3k9i_A 24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH 60 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 4566778999999999999999999999999977764
No 190
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=77.56 E-value=5.2 Score=31.11 Aligned_cols=37 Identities=11% Similarity=0.226 Sum_probs=33.2
Q ss_pred cccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeC
Q 011352 369 RISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDH 409 (488)
Q Consensus 369 rIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~ 409 (488)
+++..+||.+||++. ..|...|.+|..+|+|...-+.
T Consensus 31 ~~t~~eLA~~Lgvs~----~tV~~~L~~L~~~G~I~~~g~~ 67 (77)
T 1qgp_A 31 ATTAHDLSGKLGTPK----KEINRVLYSLAKKGKLQKEAGT 67 (77)
T ss_dssp CEEHHHHHHHHCCCH----HHHHHHHHHHHHHTSEEEECSS
T ss_pred CcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEecCCC
Confidence 899999999999987 8999999999999999766443
No 191
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=76.79 E-value=8.2 Score=30.45 Aligned_cols=51 Identities=8% Similarity=0.129 Sum_probs=35.8
Q ss_pred cccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCCcEEEEcccCcccC
Q 011352 369 RISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYS 424 (488)
Q Consensus 369 rIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~G~v~~~~~~dv~s 424 (488)
+++..+||.+||++. ..|...|.+|..+|+|.-. ....|+-......++|.
T Consensus 27 ~~t~~eLA~~Lgvsr----~tV~~~L~~Le~~G~I~~~-g~~~~~W~i~~~~~~~~ 77 (81)
T 1qbj_A 27 ATTAHDLSGKLGTPK----KEINRVLYSLAKKGKLQKE-AGTPPLWKIAVSTQAWN 77 (81)
T ss_dssp CBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEE-SSSSCEEEEC-------
T ss_pred CcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEec-CCCCCeeEEeCcHHhcc
Confidence 899999999999988 8999999999999999533 23345555555544443
No 192
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=74.38 E-value=32 Score=33.40 Aligned_cols=138 Identities=13% Similarity=0.043 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcC
Q 011352 117 LEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRH 196 (488)
Q Consensus 117 ~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~ 196 (488)
.++.+ -....+++.|+|++|.++...++. ...-+. +.|-.+..+-..+...++...+..+ ....
T Consensus 102 ~dl~L--ayA~~L~~~g~y~eA~~~l~~~~~------~~p~~~----~~~~~a~l~~~~~r~~dA~~~l~~a----~~~~ 165 (282)
T 4f3v_A 102 LAITM--GFAACEAAQGNYADAMEALEAAPV------AGSEHL----VAWMKAVVYGAAERWTDVIDQVKSA----GKWP 165 (282)
T ss_dssp HHHHH--HHHHHHHHHTCHHHHHHHHTSSCC------TTCHHH----HHHHHHHHHHHTTCHHHHHHHHTTG----GGCS
T ss_pred hHHHH--HHHHHHHHCCCHHHHHHHHHHHHh------cCCchH----HHHHHHHHHHHcCCHHHHHHHHHHh----hccC
Confidence 45444 345667788999999887444321 111122 2344455555677777776655322 2111
Q ss_pred CcccHHHHHHHHHHHHHccCCHHHHHHHHhcCC-CCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 197 DELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP-RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 197 ~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~-~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
++.-..-....+=..+-..|+++.|.....+.. -| ..+.....=.|+.|.++..+|+..+|...|..++..-|.
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~--~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP--AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST--TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC--CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 222111122223456778899999988777652 11 101112223579999999999999999999999987675
No 193
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=73.96 E-value=41 Score=30.23 Aligned_cols=133 Identities=9% Similarity=-0.053 Sum_probs=73.0
Q ss_pred CCCCHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q 011352 112 HPLPELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRI 191 (488)
Q Consensus 112 ~~~p~~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rt 191 (488)
...|...+|...=-+-.++|.+.|+.|.-++..++.....-+.-.--...+.+.+|++-++-..++...+...+-.++.-
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 44677788877777778889999999999988888775432111123455666778888777778877776666665522
Q ss_pred h--hhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcCCCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 011352 192 A--TLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQ 265 (488)
Q Consensus 192 a--~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~ 265 (488)
. ..+.+.. ...+ -...+.|.+.....-+.-.|-.++++...+++.+|...|+.
T Consensus 93 ~k~l~k~~s~-~~~~--------------------~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 93 KKALSKTSKV-RPST--------------------GNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHCC-----------------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHhcCCCc-cccc--------------------cccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 2 1221111 0000 01112332222222344456699999999999999988765
No 194
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=72.10 E-value=12 Score=31.85 Aligned_cols=61 Identities=18% Similarity=0.077 Sum_probs=40.5
Q ss_pred HHHHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHH-HHHhhcH--HHHHHHHHHHHHhCCc
Q 011352 206 NLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKI-RTIQLEY--TDAKESLLQAARKAPV 272 (488)
Q Consensus 206 n~llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri-~~~~~dy--~~A~~~L~~A~~~~P~ 272 (488)
..+-..|+..++++.|.....+. ..|.. ..+++..|.+ +...++| .+|..+|..++...|.
T Consensus 48 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~ 113 (177)
T 2e2e_A 48 ALLGEYYLWQNDYSNSLLAYRQALQLRGEN------AELYAALATVLYYQASQHMTAQTRAMIDKALALDSN 113 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHCSC------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC
Confidence 34556777888888887766654 12321 2345667777 6677887 8888888888876554
No 195
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=71.93 E-value=88 Score=31.63 Aligned_cols=56 Identities=18% Similarity=0.126 Sum_probs=43.3
Q ss_pred HHccCCHHHHHHHHhcCCCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 212 YLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 212 Yl~~~~~~~a~~li~~~~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
++-.|+++.|...+.+..--+ + + ...+..+|.++...|++.+|.++|..|++.-|.
T Consensus 287 ~l~~gd~d~A~~~l~rAl~Ln--~-s--~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 287 ALVKGKTDESYQAINTGIDLE--M-S--WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--C-C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HHhCCCHHHHHHHHHHHHhcC--C-C--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 445599999999888752111 1 1 234588999999999999999999999997665
No 196
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=71.76 E-value=1.1e+02 Score=33.41 Aligned_cols=159 Identities=13% Similarity=-0.003 Sum_probs=89.2
Q ss_pred HHHHHcccCHHHHHHHHHHHHHHHHh-hh------hh---hHH---HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHh
Q 011352 126 LIFLIDKKRYNEAKACSSASIARLKN-MN------RR---TVD---VLAARLYFYYSLCYELTGDLAEIRGNLLALHRIA 192 (488)
Q Consensus 126 ~~~l~d~~~~~~A~~~~~~lv~~l~~-~~------~r---~ld---~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta 192 (488)
..+.-..+++++|.++...+++.+.. ++ .. ..+ .-.+++|..|+......+.+..+|..+-.+....
T Consensus 385 a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~ 464 (679)
T 4e6h_A 385 SEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK 464 (679)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 33344567888888888887776421 10 00 000 0124457667766666778888998777774321
Q ss_pred hhcCCcccHHHHHHHHHHHHHcc-CCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Q 011352 193 TLRHDELGQETLLNLLLRNYLHY-NLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARK 269 (488)
Q Consensus 193 ~~~~~~~~~~~l~n~llr~Yl~~-~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~ 269 (488)
.. .....++.... .-++. +.++.|.++.... .+|.. ..-++.| +.+....++...|...|+.|+..
T Consensus 465 -~~--~~~~lyi~~A~--lE~~~~~d~e~Ar~ife~~Lk~~p~~--~~~w~~y----~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 465 -KL--VTPDIYLENAY--IEYHISKDTKTACKVLELGLKYFATD--GEYINKY----LDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp -GG--SCTHHHHHHHH--HHHTTTSCCHHHHHHHHHHHHHHTTC--HHHHHHH----HHHHHHHTCHHHHHHHHHHHTTT
T ss_pred -CC--CChHHHHHHHH--HHHHhCCCHHHHHHHHHHHHHHCCCc--hHHHHHH----HHHHHhCCCHHHHHHHHHHHHHh
Confidence 11 11223332222 22333 4588888877764 34432 1222222 33445678999999999999987
Q ss_pred CCccchhhHHHHHHHHHHHHHhcCCCCC
Q 011352 270 APVAALGFRVQCNKWAIIVRLLLGEIPE 297 (488)
Q Consensus 270 ~P~~~~~~~~~alK~lIlv~LL~G~iP~ 297 (488)
+|. ......+++.++=.+.-.|....
T Consensus 534 ~~~--~~~~~~lw~~~~~fE~~~G~~~~ 559 (679)
T 4e6h_A 534 ISD--SHLLKMIFQKVIFFESKVGSLNS 559 (679)
T ss_dssp SSS--TTHHHHHHHHHHHHHHHTCCSHH
T ss_pred cCC--HHHHHHHHHHHHHHHHHcCCHHH
Confidence 764 23345566666665555665443
No 197
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=71.01 E-value=14 Score=34.97 Aligned_cols=60 Identities=10% Similarity=-0.109 Sum_probs=48.1
Q ss_pred HHHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 208 LLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 208 llr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
+-..|+..|+|+.|.....+. ..|. ...+++..|.++...++|.+|..++..|+...|..
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (281)
T 2c2l_A 10 QGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 71 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 445788999999999887764 2332 24578899999999999999999999999866653
No 198
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=70.06 E-value=22 Score=34.54 Aligned_cols=94 Identities=14% Similarity=-0.002 Sum_probs=62.9
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC-CCCccCChhHHHHHH
Q 011352 165 YFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA-PRFEAHSNQQFCRYL 243 (488)
Q Consensus 165 ~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~-~~pe~~~~~~~v~Y~ 243 (488)
+.-|+.+.-..++.+++...+..+.. .+.... ....+--.|++.+.++.|...+... ..| .+.....-+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~----~~p~~~---~~~~~a~l~~~~~r~~dA~~~l~~a~~~~---d~~~~~~a~ 174 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPV----AGSEHL---VAWMKAVVYGAAERWTDVIDQVKSAGKWP---DKFLAGAAG 174 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCC----TTCHHH---HHHHHHHHHHHTTCHHHHHHHHTTGGGCS---CHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh----cCCchH---HHHHHHHHHHHcCCHHHHHHHHHHhhccC---CcccHHHHH
Confidence 34466666667888888765544421 222111 1112223889999999999988754 222 222233457
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHH
Q 011352 244 FYLGKIRTIQLEYTDAKESLLQAAR 268 (488)
Q Consensus 244 YY~Gri~~~~~dy~~A~~~L~~A~~ 268 (488)
||+|.++...++|.+|..+|.++..
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~ 199 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEAND 199 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 8999999999999999999999985
No 199
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=67.34 E-value=7.6 Score=31.03 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHh
Q 011352 242 YLFYLGKIRTIQLEYTDAKESLLQAARK 269 (488)
Q Consensus 242 Y~YY~Gri~~~~~dy~~A~~~L~~A~~~ 269 (488)
=+|-.|.++..+++|..|..+|..|+..
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~ 34 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQ 34 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHh
Confidence 3688999999999999999999999974
No 200
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=66.77 E-value=19 Score=36.85 Aligned_cols=65 Identities=20% Similarity=-0.034 Sum_probs=47.4
Q ss_pred HHHHHHccCCHHHHHHHHhcC--CCCccC---------ChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 208 LLRNYLHYNLYDQAEKLRSKA--PRFEAH---------SNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 208 llr~Yl~~~~~~~a~~li~~~--~~pe~~---------~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
+-..|++.++|+.|....++. ..|... .....+..++..|.++...++|.+|..+|..|+...|.
T Consensus 274 ~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 274 KGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 345677888888887766654 122211 12334677889999999999999999999999986554
No 201
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=65.36 E-value=37 Score=34.88 Aligned_cols=95 Identities=14% Similarity=0.001 Sum_probs=62.9
Q ss_pred ccCHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHh--hhcCCcccHHHHHHHH
Q 011352 132 KKRYNEAKACSSASIARLKN-MNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIA--TLRHDELGQETLLNLL 208 (488)
Q Consensus 132 ~~~~~~A~~~~~~lv~~l~~-~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta--~~~~~~~~~~~l~n~l 208 (488)
.|+|++|..+..+.+..... +...-.+ .+.++--.+.++...|+.+++......++..- ..-.+....+...|.|
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~--~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVY--MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchH--HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 36789999988887766443 2222222 22334445556667889998888777777432 2333444555667778
Q ss_pred HHHHHccCCHHHHHHHHhcC
Q 011352 209 LRNYLHYNLYDQAEKLRSKA 228 (488)
Q Consensus 209 lr~Yl~~~~~~~a~~li~~~ 228 (488)
-..|...|+|+.|..++.++
T Consensus 389 a~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHH
Confidence 88999999999998877764
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=65.17 E-value=15 Score=28.92 Aligned_cols=33 Identities=24% Similarity=0.192 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 241 RYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 241 ~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
..++..|.++...++|.+|..+|..|+...|..
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 52 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY 52 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc
Confidence 457889999999999999999999999876653
No 203
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=64.39 E-value=16 Score=31.33 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 236 NQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 236 ~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
+...-.|.||+|.-+.-.++|.+|..++...++.-|.
T Consensus 70 p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 70 KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence 3467889999999999999999999999999997664
No 204
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=63.92 E-value=17 Score=31.31 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=35.7
Q ss_pred hccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcce---EeeCCC
Q 011352 367 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA---TVDHAN 411 (488)
Q Consensus 367 YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A---~Id~~~ 411 (488)
..++|.++||.++|++. ..+-..+.+|...|.|.. .+|+.+
T Consensus 20 ~~~~s~~ela~~lg~s~----~tv~~~l~~L~~~G~i~~~~~~~~~~~ 63 (152)
T 2cg4_A 20 NARTAYAELAKQFGVSP----ETIHVRVEKMKQAGIITGARIDVSPKQ 63 (152)
T ss_dssp CTTSCHHHHHHHHTSCH----HHHHHHHHHHHHHTSEEEEEEEECTTT
T ss_pred cCCCCHHHHHHHHCcCH----HHHHHHHHHHHHcCCcceEEEecCHHH
Confidence 47899999999999987 899999999999999975 567653
No 205
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=63.34 E-value=17 Score=31.57 Aligned_cols=36 Identities=19% Similarity=0.034 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 237 QQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 237 ~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
...-.|+||++.-+.-.++|.+|.++...+++.-|.
T Consensus 75 ~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 75 SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 457788999999999999999999999999987665
No 206
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=62.27 E-value=19 Score=27.53 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=31.1
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcce
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA 405 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A 405 (488)
..++.++||..+|++. ..+-..+..|...|.|..
T Consensus 13 ~~~s~~eLa~~lgvs~----~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 13 NGGKTAEIAEALAVTD----YQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp CCCCHHHHHHHHTSCH----HHHHHHHHHHHHHTSEEE
T ss_pred CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEE
Confidence 5699999999999987 899999999999999964
No 207
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=61.89 E-value=32 Score=34.03 Aligned_cols=66 Identities=11% Similarity=0.058 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHcchhhhcCcchHHHHHHHHHHHHHhHHHHHHhhc----cccHHHHHHHhcCCCCCChHHHHHHH
Q 011352 323 GDLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYS----RISLADVAKKLRLDSANPVADAESIV 394 (488)
Q Consensus 323 Gdl~~f~~~l~~~~~~f~~D~~~~Lv~rLr~~vir~~ir~i~~~Ys----rIsL~dIa~~L~l~~~~d~eeaE~il 394 (488)
||...|=+.+..-...+... .+++.....+.+..++.++++|. .+|++.++..|+++++ +|++..+
T Consensus 177 gNY~rFFrL~~~~~~pyL~a---clle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~---ee~~~F~ 246 (316)
T 3t5v_A 177 NFYARFFQLMQSPSLPLLMG---FFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNR---QEIIEFC 246 (316)
T ss_dssp CCHHHHHHHHTCTTSCHHHH---HHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSH---HHHHHHH
T ss_pred chHHHHHHHHhccCCChHHH---HHHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCH---HHHHHHH
Confidence 77777777766422222211 23444444555667788889994 8999999999999985 7776665
No 208
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=58.80 E-value=13 Score=29.10 Aligned_cols=38 Identities=11% Similarity=0.126 Sum_probs=33.5
Q ss_pred HHHhhccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcc
Q 011352 363 ISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAID 404 (488)
Q Consensus 363 i~~~YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~ 404 (488)
.-....+++++++|..++++. .-+...+..+...|.|.
T Consensus 10 ~L~~~g~vsv~eLa~~l~VS~----~TIRrdL~~Le~~G~l~ 47 (78)
T 1xn7_A 10 LLALRGRMEAAQISQTLNTPQ----PMINAMLQQLESMGKAV 47 (78)
T ss_dssp HHHHSCSBCHHHHHHHTTCCH----HHHHHHHHHHHHHTSEE
T ss_pred HHHHcCCCcHHHHHHHHCcCH----HHHHHHHHHHHHCCCEE
Confidence 334568999999999999987 89999999999999983
No 209
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=57.81 E-value=9.9 Score=30.18 Aligned_cols=49 Identities=12% Similarity=0.050 Sum_probs=36.0
Q ss_pred HHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 218 YDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 218 ~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
.+.|..++.+. .-|.. ++=.+++|.++..+++|.+|..+++.++..-|.
T Consensus 25 ~~~A~~~l~~AL~~dp~~------~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYN------EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHCcCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 55666665553 12322 223678899999999999999999999987776
No 210
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.02 E-value=1.7e+02 Score=29.77 Aligned_cols=66 Identities=8% Similarity=0.073 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHhcCC--CCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 011352 202 ETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAA 267 (488)
Q Consensus 202 ~~l~n~llr~Yl~~~~~~~a~~li~~~~--~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~ 267 (488)
+-+.-.|.++|...|.+..|.+++.... .....+....+.|+..-.|++...+||..|...+..+-
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4445567899999999999999988752 22346788999999999999999999999998888764
No 211
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=56.78 E-value=1.1e+02 Score=36.65 Aligned_cols=59 Identities=15% Similarity=0.142 Sum_probs=32.8
Q ss_pred HHHHHcccCHHHHHHHHHH----------HHHHHHhhhhhhHHH----HHHHHHHHHHHHHHhhccHHHHHHHH
Q 011352 126 LIFLIDKKRYNEAKACSSA----------SIARLKNMNRRTVDV----LAARLYFYYSLCYELTGDLAEIRGNL 185 (488)
Q Consensus 126 ~~~l~d~~~~~~A~~~~~~----------lv~~l~~~~~r~ld~----l~ak~~~y~s~~~e~~~~l~~~r~~L 185 (488)
..-+++.|+|+||+.+-.+ ++..+..|+ |..+. -..++|+-++.+.+..|.+.++....
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nld-rAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLD-RAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3445667889998876654 233333442 22211 12445677777777777666554433
No 212
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=56.30 E-value=1.1e+02 Score=31.10 Aligned_cols=135 Identities=10% Similarity=0.075 Sum_probs=76.9
Q ss_pred HcccCHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHH
Q 011352 130 IDKKRYNEAKACSSASIARLKNMNR-RTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLL 208 (488)
Q Consensus 130 ~d~~~~~~A~~~~~~lv~~l~~~~~-r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~l 208 (488)
.+.|++++..++...+...+..++. ++-..+. ...-.+....+.....-.....+..-|.....-|-...+-..+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~----~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL 105 (394)
T 3txn_A 30 KQEGKAKELADLIKVTRPFLSSISKAKAAKLVR----SLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARL 105 (394)
T ss_dssp HHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHH----HHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHH----HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888766665544333333321 1111111 1111111122333333333444443333222222223343468
Q ss_pred HHHHHccCCHHHHHHHHhcC--CCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 011352 209 LRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAAR 268 (488)
Q Consensus 209 lr~Yl~~~~~~~a~~li~~~--~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~ 268 (488)
.+.|+..+.|..|..++... .....-...+.+.-+-.-.++|...+|+.++...++.|-.
T Consensus 106 ~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 106 IALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 88999999999998888774 1111123578888888999999999999999999999875
No 213
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=55.84 E-value=13 Score=29.77 Aligned_cols=40 Identities=8% Similarity=0.140 Sum_probs=34.6
Q ss_pred HHHhhccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceE
Q 011352 363 ISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDAT 406 (488)
Q Consensus 363 i~~~YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~ 406 (488)
+-....+++++++|..++++. .-+...|..+...|.|.=.
T Consensus 10 ~L~~~g~vsv~eLA~~l~VS~----~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 10 MLALQGRMEAKQLSARLQTPQ----PLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHSCSEEHHHHHHHTTCCH----HHHHHHHHHHHTTCCSEEE
T ss_pred HHHHcCCCcHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEE
Confidence 334568999999999999987 8999999999999999544
No 214
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=54.44 E-value=18 Score=31.76 Aligned_cols=35 Identities=20% Similarity=0.033 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 238 QFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 238 ~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
..-.|.||++.-+.-.+||.+|.++....++.-|.
T Consensus 75 ~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 75 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 45668999999999999999999999999996564
No 215
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=51.61 E-value=60 Score=26.54 Aligned_cols=40 Identities=13% Similarity=0.256 Sum_probs=34.5
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCC
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN 411 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~ 411 (488)
..++.++||..++++. ..+-.+|.+|..+|.|.-.-++.+
T Consensus 47 ~~~~~~~la~~l~~~~----~tvs~~l~~L~~~gli~r~~~~~d 86 (138)
T 1jgs_A 47 ACITPVELKKVLSVDL----GALTRMLDRLVCKGWVERLPNPND 86 (138)
T ss_dssp SSBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEECTTC
T ss_pred CCCCHHHHHHHHCCCh----HHHHHHHHHHHHCCCEEecCCccc
Confidence 5789999999999987 889999999999999977666544
No 216
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=51.03 E-value=32 Score=30.62 Aligned_cols=92 Identities=20% Similarity=0.137 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccC----CHHHHHHHHhcCCCCccCChhHHH
Q 011352 165 YFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYN----LYDQAEKLRSKAPRFEAHSNQQFC 240 (488)
Q Consensus 165 ~~y~s~~~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~----~~~~a~~li~~~~~pe~~~~~~~v 240 (488)
++.+..++...++..++...+..+ ....+...+..+ -..|.. + +++.|...+.+..-+.. .
T Consensus 21 ~~~lg~~~~~~~~~~~A~~~~~~a----~~~g~~~a~~~l----g~~y~~-~g~~~~~~~A~~~~~~A~~~g~------~ 85 (212)
T 3rjv_A 21 QYYLADTWVSSGDYQKAEYWAQKA----AAQGDGDALALL----AQLKIR-NPQQADYPQARQLAEKAVEAGS------K 85 (212)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH----HHTTCHHHHHHH----HHHTTS-STTSCCHHHHHHHHHHHHHTTC------H
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHH----HHcCCHHHHHHH----HHHHHc-CCCCCCHHHHHHHHHHHHHCCC------H
Confidence 455555665667777776555544 223333333333 334556 6 88999888777532211 2
Q ss_pred HHHHHHHHHHHH----hhcHHHHHHHHHHHHHhCC
Q 011352 241 RYLFYLGKIRTI----QLEYTDAKESLLQAARKAP 271 (488)
Q Consensus 241 ~Y~YY~Gri~~~----~~dy~~A~~~L~~A~~~~P 271 (488)
.-+|.+|.++.. .+|+.+|..+|..|...-|
T Consensus 86 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 120 (212)
T 3rjv_A 86 SGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE 120 (212)
T ss_dssp HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence 225678888876 8899999999999987533
No 217
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=50.29 E-value=6.4 Score=33.99 Aligned_cols=56 Identities=11% Similarity=-0.091 Sum_probs=42.1
Q ss_pred HHHHccCCHHHHHHHHhcCC--CCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC
Q 011352 210 RNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP 271 (488)
Q Consensus 210 r~Yl~~~~~~~a~~li~~~~--~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P 271 (488)
..|+..|+++.|...++... .|. ....++..|.++...++|.+|..+|..++...|
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p 71 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSDELQS------RGDVKLAKADCLLETKQFELAQELLATIPLEYQ 71 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHHHHT------SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC
Confidence 46778888888888777752 232 234577888999999999999999888887655
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=48.81 E-value=35 Score=25.59 Aligned_cols=30 Identities=20% Similarity=0.080 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhCCcc
Q 011352 244 FYLGKIRTIQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 244 YY~Gri~~~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
|-.|..+...++|.+|..+|..++...|..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 33 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVG 33 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 567999999999999999999999876654
No 219
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=48.75 E-value=31 Score=30.57 Aligned_cols=41 Identities=12% Similarity=0.276 Sum_probs=35.1
Q ss_pred hccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcce---EeeCCC
Q 011352 367 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA---TVDHAN 411 (488)
Q Consensus 367 YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A---~Id~~~ 411 (488)
-.++|.++||.++|++. ..+-..+.+|...|.|.. .+|+.+
T Consensus 29 ~~~~s~~eLA~~lglS~----~tv~~~l~~L~~~G~I~~~~~~~d~~~ 72 (171)
T 2ia0_A 29 DARLTISELSEQLKKPE----STIHFRIKKLQERGVIERYTIILGEQL 72 (171)
T ss_dssp CTTCCHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEEEEEECTTT
T ss_pred cCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEeecccCCHHH
Confidence 46899999999999987 899999999999999963 566653
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=48.37 E-value=1e+02 Score=31.28 Aligned_cols=98 Identities=13% Similarity=-0.042 Sum_probs=59.9
Q ss_pred HHcccCHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHh--hhcCCcccHHHHH
Q 011352 129 LIDKKRYNEAKACSSASIARLKN-MNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIA--TLRHDELGQETLL 205 (488)
Q Consensus 129 l~d~~~~~~A~~~~~~lv~~l~~-~~~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta--~~~~~~~~~~~l~ 205 (488)
+..+++|++|..+...++..... +...- ...+.++--.+.++...|++.++......++... ..-.+....+...
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h--~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDIN--IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTS--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccc--hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 34578899888887766644221 21111 1122333444555556788888877776666332 2223333445556
Q ss_pred HHHHHHHHccCCHHHHHHHHhcC
Q 011352 206 NLLLRNYLHYNLYDQAEKLRSKA 228 (488)
Q Consensus 206 n~llr~Yl~~~~~~~a~~li~~~ 228 (488)
|.|-..|...|.++.|..++.++
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Confidence 77888999999999998877764
No 221
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=47.87 E-value=29 Score=29.56 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=35.3
Q ss_pred hhccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcce---EeeCC
Q 011352 366 SYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA---TVDHA 410 (488)
Q Consensus 366 ~YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A---~Id~~ 410 (488)
...++|.++||.++|++. ..+-..+.+|...|.|.. .+|+.
T Consensus 16 ~~~~~s~~ela~~lg~s~----~tv~~~l~~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 16 KDSRLSMRELGRKIKLSP----PSVTERVRQLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HCSCCCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HcCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEEEecccChh
Confidence 347899999999999987 899999999999999964 36655
No 222
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=46.79 E-value=81 Score=27.81 Aligned_cols=73 Identities=16% Similarity=0.264 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHH----HHHHHHHHhhccHHHHHHHHHHHHHHh
Q 011352 118 EIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRR-TVDVLAARLY----FYYSLCYELTGDLAEIRGNLLALHRIA 192 (488)
Q Consensus 118 e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r-~ld~l~ak~~----~y~s~~~e~~~~l~~~r~~L~~~~rta 192 (488)
+..++.=...-+...|+|++|..+....+.. ||++ .+++=.++.| |--..+....++.+++...+-.++...
T Consensus 56 ~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l---~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 56 DAFCHAGLAEALAGLRSFDEALHSADKALHY---FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3445555666677789999999999988775 5544 3333344556 888888889999998887777776544
Q ss_pred h
Q 011352 193 T 193 (488)
Q Consensus 193 ~ 193 (488)
.
T Consensus 133 p 133 (159)
T 2hr2_A 133 E 133 (159)
T ss_dssp H
T ss_pred C
Confidence 3
No 223
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=46.61 E-value=24 Score=30.84 Aligned_cols=42 Identities=31% Similarity=0.391 Sum_probs=36.1
Q ss_pred hhccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcc---eEeeCCC
Q 011352 366 SYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAID---ATVDHAN 411 (488)
Q Consensus 366 ~YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~---A~Id~~~ 411 (488)
--.++|.++||..+|++. ..+-..+.+|...|.|. |.+|+.+
T Consensus 14 ~~~~~s~~~la~~lg~s~----~tv~~rl~~L~~~g~i~~~~a~~~~~~ 58 (162)
T 3i4p_A 14 EDSTLAVADLAKKVGLST----TPCWRRIQKMEEDGVIRRRVALLDPVK 58 (162)
T ss_dssp TCSCSCHHHHHHHHTCCH----HHHHHHHHHHHHTTSSCCCCCCCCTTT
T ss_pred HCCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeeeceeeeCHHH
Confidence 347899999999999987 89999999999999986 5677654
No 224
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=45.73 E-value=31 Score=29.92 Aligned_cols=40 Identities=8% Similarity=0.197 Sum_probs=34.5
Q ss_pred hccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcce---EeeCC
Q 011352 367 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA---TVDHA 410 (488)
Q Consensus 367 YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A---~Id~~ 410 (488)
..++|.++||.++|++. ..+-..+.+|...|.|.. .+|+.
T Consensus 22 ~~~~s~~ela~~lg~s~----~tv~~~l~~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 22 NGRLTNVELSERVALSP----SPCLRRLKQLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp CTTCCHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred cCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEeeecccCChH
Confidence 46899999999999987 889999999999999964 45654
No 225
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=45.60 E-value=1.4e+02 Score=29.88 Aligned_cols=27 Identities=11% Similarity=-0.044 Sum_probs=17.6
Q ss_pred HHHHHHHHHHH----hhcHHHHHHHHHHHHH
Q 011352 242 YLFYLGKIRTI----QLEYTDAKESLLQAAR 268 (488)
Q Consensus 242 Y~YY~Gri~~~----~~dy~~A~~~L~~A~~ 268 (488)
-++.+|.+|.. .+++.+|..+|..|..
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 215 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSAT 215 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 35566666665 6677777777776665
No 226
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=45.06 E-value=30 Score=26.88 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=29.4
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcc
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAID 404 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~ 404 (488)
-.+++.+||..+|++. .-|...|..|-.+|+|.
T Consensus 23 ~~psv~EIa~~lgvS~----~TVrr~L~~Le~kG~I~ 55 (77)
T 2jt1_A 23 APVKTRDIADAAGLSI----YQVRLYLEQLHDVGVLE 55 (77)
T ss_dssp SCEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEE
T ss_pred CCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCcEE
Confidence 4589999999999964 77999999999999994
No 227
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=44.94 E-value=31 Score=29.50 Aligned_cols=40 Identities=20% Similarity=0.206 Sum_probs=34.7
Q ss_pred hccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcce---EeeCC
Q 011352 367 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA---TVDHA 410 (488)
Q Consensus 367 YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A---~Id~~ 410 (488)
..++|.++||..+|++. ..+-..+.+|...|.|.. .+|+.
T Consensus 21 ~~~~s~~ela~~lg~s~----~tv~~~l~~L~~~G~i~~~~~~~~~~ 63 (151)
T 2dbb_A 21 NSRLTYRELADILNTTR----QRIARRIDKLKKLGIIRKFTIIPDID 63 (151)
T ss_dssp CTTCCHHHHHHHTTSCH----HHHHHHHHHHHHHTSEEEEEEEECTG
T ss_pred cCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEEEecCChH
Confidence 47899999999999987 889999999999999964 36655
No 228
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=44.71 E-value=38 Score=28.18 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=35.6
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCCcEEEEc
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSK 417 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~G~v~~~ 417 (488)
..++.++||..++++. ..++.++..|...|.|...=...+||.--.
T Consensus 25 ~~~s~~ela~~~~i~~----~~v~~il~~L~~~Glv~~~~g~~ggy~L~~ 70 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSE----HYLEQLVSPLRNAGLVKSIRGAYGGYVLGS 70 (129)
T ss_dssp CCBCHHHHHHHTTSCH----HHHHHHHHHHHHTTSEEEC----CCEEESS
T ss_pred CcCCHHHHHHHHCcCH----HHHHHHHHHHHHCCceEecCCCCCceEeCC
Confidence 4689999999999987 899999999999999965433345676444
No 229
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=44.14 E-value=26 Score=29.20 Aligned_cols=72 Identities=18% Similarity=0.020 Sum_probs=47.7
Q ss_pred HHHHhhhcCCcccHHHHHHHHHHHHHc----cCCHHHHHHHHhcCCCCccCChhHHHHHHHHHHHHHHH----hhcHHHH
Q 011352 188 LHRIATLRHDELGQETLLNLLLRNYLH----YNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTI----QLEYTDA 259 (488)
Q Consensus 188 ~~rta~~~~~~~~~~~l~n~llr~Yl~----~~~~~~a~~li~~~~~pe~~~~~~~v~Y~YY~Gri~~~----~~dy~~A 259 (488)
.++.++...+...+..+. ..|.. .++++.|.....+..-.. . ..=.|.+|.+|.. .+|+.+|
T Consensus 47 ~~~~Aa~~g~~~a~~~Lg----~~y~~G~g~~~d~~~A~~~~~~Aa~~g-~-----~~a~~~Lg~~y~~G~g~~~d~~~A 116 (138)
T 1klx_A 47 YLSKACELNSGNGCRFLG----DFYENGKYVKKDLRKAAQYYSKACGLN-D-----QDGCLILGYKQYAGKGVVKNEKQA 116 (138)
T ss_dssp HHHHHHHTTCHHHHHHHH----HHHHHCSSSCCCHHHHHHHHHHHHHTT-C-----HHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHcCCCHHHHHHHH----HHHHcCCCCCccHHHHHHHHHHHHcCC-C-----HHHHHHHHHHHHCCCCCCcCHHHH
Confidence 344444444444444433 35566 788888888777752111 1 1225788999988 8999999
Q ss_pred HHHHHHHHHh
Q 011352 260 KESLLQAARK 269 (488)
Q Consensus 260 ~~~L~~A~~~ 269 (488)
..+|..|...
T Consensus 117 ~~~~~~Aa~~ 126 (138)
T 1klx_A 117 VKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHC
Confidence 9999999874
No 230
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=41.90 E-value=26 Score=29.85 Aligned_cols=40 Identities=25% Similarity=0.441 Sum_probs=34.8
Q ss_pred hccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcce---EeeCC
Q 011352 367 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA---TVDHA 410 (488)
Q Consensus 367 YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A---~Id~~ 410 (488)
..++|.++||..+|++. ..+-..+.+|...|.|.. .+|+.
T Consensus 15 ~~~~~~~ela~~lg~s~----~tv~~~l~~L~~~G~i~~~~~~~d~~ 57 (150)
T 2pn6_A 15 NAKYSLDEIAREIRIPK----ATLSYRIKKLEKDGVIKGYYAYINPA 57 (150)
T ss_dssp CTTSCHHHHHHHHTSCH----HHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred cCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCcEEEEEeecCHH
Confidence 45899999999999987 899999999999999975 46654
No 231
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=41.66 E-value=46 Score=33.71 Aligned_cols=157 Identities=14% Similarity=0.020 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHH--HcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhc-----cHHHHHHHHHH
Q 011352 115 PELEIYCYLLVLIFL--IDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTG-----DLAEIRGNLLA 187 (488)
Q Consensus 115 p~~e~~~~ll~~~~l--~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~~~y~s~~~e~~~-----~l~~~r~~L~~ 187 (488)
|........|..+++ ...+++++|..+ + ++..+.=.+..++....++. .| +..++...+..
T Consensus 245 ~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~----------~-~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 245 PGYPASWVSLAQLLYDFPELGDVEQMMKY----------L-DNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp GGSTHHHHHHHHHHHHSGGGCCHHHHHHH----------H-HHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHH----------H-HHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Q ss_pred HHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcCCCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 011352 188 LHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAA 267 (488)
Q Consensus 188 ~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~ 267 (488)
+. ..+...+..+..+...-.--..+++.|.....+..-+........+-+.|..|. ....|+.+|..+|..|.
T Consensus 313 Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~--g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 313 AV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGK--GTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp TT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCT--TBCCCHHHHHHHHHHHH
T ss_pred Hh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCC--CCCCCHHHHHHHHHHHH
Q ss_pred HhCCccchhhHHHHHHHHHHHHH
Q 011352 268 RKAPVAALGFRVQCNKWAIIVRL 290 (488)
Q Consensus 268 ~~~P~~~~~~~~~alK~lIlv~L 290 (488)
..-+..+......+...+-+-++
T Consensus 386 ~~g~~~a~~~l~~l~~~~~~~~~ 408 (452)
T 3e4b_A 386 AQDTPEANDLATQLEAPLTPAQR 408 (452)
T ss_dssp TTCCHHHHHHHHHHHTTCCHHHH
T ss_pred HCCCHHHHHHHHHHHHhCCHHHH
No 232
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=41.20 E-value=40 Score=26.10 Aligned_cols=28 Identities=21% Similarity=0.165 Sum_probs=25.6
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 245 YLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 245 Y~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
..|--.+.++++.+|..||..|+.-||+
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 5788888899999999999999998887
No 233
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=41.12 E-value=3.3e+02 Score=29.45 Aligned_cols=168 Identities=15% Similarity=0.161 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHhhh------cCCcc----------cHHHHHHHHHHHHHccCCHHHHHHHHhc
Q 011352 164 LYFYYSLCYELTGDLAEIRGNLLALHRIATL------RHDEL----------GQETLLNLLLRNYLHYNLYDQAEKLRSK 227 (488)
Q Consensus 164 ~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~------~~~~~----------~~~~l~n~llr~Yl~~~~~~~a~~li~~ 227 (488)
+|+.|+...|..++.+.+|..+-.++..... .+.+. ....+.....+...+.+..+.|..++..
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4677888889999999999887777643210 01110 1111222333444456788999998887
Q ss_pred C-CC-CccCChhHHHHHHHHHHHHHHH-hhcHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHhcCCCCC-cchhcc
Q 011352 228 A-PR-FEAHSNQQFCRYLFYLGKIRTI-QLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPE-RTVFMQ 303 (488)
Q Consensus 228 ~-~~-pe~~~~~~~v~Y~YY~Gri~~~-~~dy~~A~~~L~~A~~~~P~~~~~~~~~alK~lIlv~LL~G~iP~-~~ll~~ 303 (488)
. .. |.... -.|. ..+.+-.. .+++..|...|+.++.++|.... +......+.+ -.|++.. +.+|..
T Consensus 460 A~~~~~~~~~----~lyi-~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~-~w~~y~~fe~----~~~~~~~AR~lfer 529 (679)
T 4e6h_A 460 CRRLKKLVTP----DIYL-ENAYIEYHISKDTKTACKVLELGLKYFATDGE-YINKYLDFLI----YVNEESQVKSLFES 529 (679)
T ss_dssp HHHTGGGSCT----HHHH-HHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHH-HHHHHHHHHH----HHTCHHHHHHHHHH
T ss_pred HHHhcCCCCh----HHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHCCCchH-HHHHHHHHHH----hCCCHHHHHHHHHH
Confidence 5 22 32211 1122 22333333 45699999999999999886432 2222222211 1354332 223322
Q ss_pred hh--------hhhhhhhHHHHHHHHhcCCHHHHHHHHHHcchhhhcCc
Q 011352 304 KG--------MEKALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDR 343 (488)
Q Consensus 304 ~~--------l~~~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~~~f~~D~ 343 (488)
-. .......|..+-. +.||+....++.++....|-.+.
T Consensus 530 al~~~~~~~~~~~lw~~~~~fE~--~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 530 SIDKISDSHLLKMIFQKVIFFES--KVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HTTTSSSTTHHHHHHHHHHHHHH--HTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHhcCCHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCc
Confidence 10 0111222322222 45787777777777777766654
No 234
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=40.66 E-value=23 Score=34.57 Aligned_cols=31 Identities=6% Similarity=-0.074 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc
Q 011352 242 YLFYLGKIRTIQLEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 242 Y~YY~Gri~~~~~dy~~A~~~L~~A~~~~P~ 272 (488)
.++..|.++...++|.+|..+|..|+...|.
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 262 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEK 262 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 5788999999999999999999999986664
No 235
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=40.64 E-value=1e+02 Score=23.77 Aligned_cols=38 Identities=11% Similarity=0.252 Sum_probs=33.5
Q ss_pred hccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEee
Q 011352 367 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVD 408 (488)
Q Consensus 367 YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id 408 (488)
...++..+||..++++. ..+-..|..|...|.|...-+
T Consensus 32 ~~~~s~~ela~~l~is~----~tv~~~l~~L~~~glv~~~~~ 69 (109)
T 1sfx_A 32 RGGMRVSEIARELDLSA----RFVRDRLKVLLKRGFVRREIV 69 (109)
T ss_dssp HCCBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEEEee
Confidence 35799999999999987 899999999999999976654
No 236
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=40.06 E-value=38 Score=29.93 Aligned_cols=48 Identities=17% Similarity=0.303 Sum_probs=39.7
Q ss_pred cccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCCcEEEEcccC
Q 011352 369 RISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKETG 420 (488)
Q Consensus 369 rIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~G~v~~~~~~ 420 (488)
.++.++||..++++. .-++.++.+|...|.|..+=-...||.--.+..
T Consensus 44 ~~s~~eIA~~~~i~~----~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~ 91 (159)
T 3lwf_A 44 PISLRSIAQDKNLSE----HYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDPE 91 (159)
T ss_dssp CBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEECSTTCEEEECSCTT
T ss_pred CcCHHHHHHHHCcCH----HHHHHHHHHHHHCCeEEEecCCCCceEecCCHH
Confidence 599999999999987 899999999999999987655556777555443
No 237
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=39.91 E-value=17 Score=31.34 Aligned_cols=62 Identities=10% Similarity=0.129 Sum_probs=42.7
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcce--EeeCCCcEEEEcccCcccCCccccHHHHHHHHHHHHhh
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA--TVDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMH 443 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A--~Id~~~G~v~~~~~~dv~s~~ep~~~l~~rI~~~l~l~ 443 (488)
.-++.+.||.+++++. .++..+|.++|..|.|.= +.|.. |-.. +.|+ +..+-.++..++.-.
T Consensus 50 ~~ps~~~LA~~~~~s~----~~v~~~L~~L~~KGlI~i~~~~d~~-g~~~-----~~yd----L~pL~ekL~~~~~~~ 113 (135)
T 2v79_A 50 YFPTPNQLQEGMSISV----EECTNRLRMFIQKGFLFIEECEDQN-GIKF-----EKYS----LQPLWGKLYEYIQLA 113 (135)
T ss_dssp CSCCHHHHHTTSSSCH----HHHHHHHHHHHHHTSCEEEEEECTT-CCEE-----EEEE----CHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEEeEecCC-CceE-----EEee----HHHHHHHHHHHHHHH
Confidence 5578999999999988 999999999999999942 22322 2211 2233 245666777776543
No 238
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=38.82 E-value=28 Score=30.06 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=38.3
Q ss_pred cccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCCcEEEEccc
Q 011352 369 RISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKET 419 (488)
Q Consensus 369 rIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~G~v~~~~~ 419 (488)
.++.++||..++++. .-++.++.+|-..|.|...=-...||.--.+.
T Consensus 28 ~~s~~~IA~~~~i~~----~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p 74 (143)
T 3t8r_A 28 CISLKSIAEENNLSD----LYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPA 74 (143)
T ss_dssp CEEHHHHHHHTTCCH----HHHHHHHHHHHHTTSEEECSSSSSEEEESSCG
T ss_pred CcCHHHHHHHHCcCH----HHHHHHHHHHHHCCEEEecCCCCCCeeecCCc
Confidence 599999999999987 89999999999999997654444577654443
No 239
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=38.21 E-value=82 Score=24.18 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=32.1
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEee
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVD 408 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id 408 (488)
..++.++||..++++. ..+-..+..|...|.|...-+
T Consensus 37 ~~~s~~ela~~l~is~----~tvs~~l~~L~~~glv~~~~~ 73 (99)
T 3cuo_A 37 PGTSAGELTRITGLSA----SATSQHLARMRDEGLIDSQRD 73 (99)
T ss_dssp CSEEHHHHHHHHCCCH----HHHHHHHHHHHHTTSEEEEEC
T ss_pred CCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEEec
Confidence 4689999999999987 889999999999999965543
No 240
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=37.84 E-value=1.1e+02 Score=23.52 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=33.5
Q ss_pred hccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEee
Q 011352 367 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVD 408 (488)
Q Consensus 367 YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id 408 (488)
...++.++||..+|++. ..+-.+|..|...|.|.-.-+
T Consensus 34 ~~~~t~~ela~~l~is~----~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 34 EKPITSEELADIFKLSK----TTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp CSCEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEeecc
Confidence 46799999999999987 889999999999999976544
No 241
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=36.87 E-value=54 Score=27.92 Aligned_cols=40 Identities=18% Similarity=0.320 Sum_probs=34.4
Q ss_pred hccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcce---EeeCC
Q 011352 367 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA---TVDHA 410 (488)
Q Consensus 367 YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A---~Id~~ 410 (488)
..+++.++||..+|++. ..+-..+.+|...|.|.. .+|+.
T Consensus 19 ~~~~s~~ela~~lg~s~----~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (150)
T 2w25_A 19 DGRATLSELATRAGLSV----SAVQSRVRRLESRGVVQGYSARINPE 61 (150)
T ss_dssp CTTCCHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred cCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEEEeccChh
Confidence 47899999999999987 899999999999999953 45654
No 242
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=36.28 E-value=44 Score=28.58 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=34.4
Q ss_pred hccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcce---EeeCC
Q 011352 367 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA---TVDHA 410 (488)
Q Consensus 367 YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A---~Id~~ 410 (488)
..++|.++||..+|++. ..+-..+.+|...|.|.. .+|+.
T Consensus 19 ~~~~s~~ela~~lg~s~----~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (151)
T 2cyy_A 19 DGKAPLREISKITGLAE----STIHERIRKLRESGVIKKFTAIIDPE 61 (151)
T ss_dssp CTTCCHHHHHHHHCSCH----HHHHHHHHHHHHHTSSCCCCCCCCGG
T ss_pred cCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEEEEEEECHH
Confidence 46899999999999987 899999999999999954 45654
No 243
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=34.69 E-value=54 Score=29.01 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=34.7
Q ss_pred hccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcce---EeeCC
Q 011352 367 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA---TVDHA 410 (488)
Q Consensus 367 YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A---~Id~~ 410 (488)
..++|+++||.++|++. ..+-..+.+|...|.|.. .+|+.
T Consensus 39 ~~~~s~~eLA~~lglS~----~tv~~rl~~L~~~G~I~~~~a~vd~~ 81 (171)
T 2e1c_A 39 DGKAPLREISKITGLAE----STIHERIRKLRESGVIKKFTAIIDPE 81 (171)
T ss_dssp CTTCCHHHHHHHHTSCH----HHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred cCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEeeeEEECHH
Confidence 47999999999999987 889999999999999954 46664
No 244
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=34.57 E-value=61 Score=26.73 Aligned_cols=39 Identities=15% Similarity=0.114 Sum_probs=34.2
Q ss_pred hccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeC
Q 011352 367 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDH 409 (488)
Q Consensus 367 YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~ 409 (488)
...++.++||..++++. ..+-.+|.+|...|.|.-.-+.
T Consensus 48 ~~~~~~~ela~~l~~s~----~tvs~~l~~Le~~glv~r~~~~ 86 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQ----SAITASVDKLEEMGLVVRVRDR 86 (146)
T ss_dssp TSCBCHHHHHHHTTCCH----HHHHHHHHHHHHTTSEEEEECS
T ss_pred cCCcCHHHHHHHhCCCc----hhHHHHHHHHHHCCCEEeecCC
Confidence 67899999999999987 7899999999999999766554
No 245
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=34.48 E-value=39 Score=29.86 Aligned_cols=47 Identities=21% Similarity=0.384 Sum_probs=38.5
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCCcEEEEcc
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKE 418 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~G~v~~~~ 418 (488)
..++.++||..++++. .-++.++.++-..|.|..+=-...||.--.+
T Consensus 27 ~~~s~~~IA~~~~is~----~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~ 73 (162)
T 3k69_A 27 SKVASRELAQSLHLNP----VMIRNILSVLHKHGYLTGTVGKNGGYQLDLA 73 (162)
T ss_dssp SCBCHHHHHHHHTSCG----GGTHHHHHHHHHTTSSEEECSTTCEEECCSC
T ss_pred CCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEeecCCCCCeEecCC
Confidence 4699999999999998 8999999999999999766444557765443
No 246
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=34.16 E-value=93 Score=24.87 Aligned_cols=41 Identities=10% Similarity=0.139 Sum_probs=35.5
Q ss_pred hccccHHHHHHHh-cCCCCCChHHHHHHHHHHHHcCCcceEeeCCC
Q 011352 367 YSRISLADVAKKL-RLDSANPVADAESIVSKAIRDGAIDATVDHAN 411 (488)
Q Consensus 367 YsrIsL~dIa~~L-~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~ 411 (488)
...+++++|+..+ +++. ..+-..|..|...|.|....+..+
T Consensus 25 ~~~~~~~eLa~~l~~is~----~tls~~L~~Le~~GlI~r~~~~~d 66 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQ----KMLTQQLRELEADGVINRIVYNQV 66 (107)
T ss_dssp TCCBCHHHHHHHCTTSCH----HHHHHHHHHHHHTTSEEEEEECSS
T ss_pred hCCCCHHHHHHHhcCCCH----HHHHHHHHHHHHCCCEEEeecCCC
Confidence 4678999999999 9987 788999999999999988777543
No 247
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=34.11 E-value=1.5e+02 Score=22.48 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=32.7
Q ss_pred hccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEe
Q 011352 367 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATV 407 (488)
Q Consensus 367 YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~I 407 (488)
...++.++||..++++. ..+-..|..|...|.|...-
T Consensus 28 ~~~~~~~ela~~l~is~----~tvs~~l~~L~~~gli~~~~ 64 (100)
T 1ub9_A 28 RRKAPFSQIQKVLDLTP----GNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp HSEEEHHHHHHHTTCCH----HHHHHHHHHHHHTTSEEEEE
T ss_pred cCCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEEe
Confidence 36799999999999987 78999999999999997655
No 248
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=34.02 E-value=1.1e+02 Score=25.78 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=31.4
Q ss_pred hccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeC
Q 011352 367 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDH 409 (488)
Q Consensus 367 YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~ 409 (488)
...++.++||..++++. ..+-.+|.+|...|.|.-.-+.
T Consensus 61 ~~~~t~~ela~~l~is~----~tvs~~l~~Le~~glv~r~~~~ 99 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDK----VAVSRAVARLLERGFIRRETHG 99 (162)
T ss_dssp STTCCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEC----
T ss_pred CCCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEeeecCC
Confidence 45799999999999987 8899999999999999654443
No 249
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=33.68 E-value=72 Score=26.01 Aligned_cols=45 Identities=13% Similarity=0.255 Sum_probs=37.6
Q ss_pred hccc-cHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCCcEEEEc
Q 011352 367 YSRI-SLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSK 417 (488)
Q Consensus 367 YsrI-sL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~G~v~~~ 417 (488)
-.++ |..++|..+|++. .-+...+..+..+|.|. ..+.+|+....
T Consensus 30 G~~lPs~~~La~~~~vSr----~tvr~al~~L~~~Gli~--~~~~~G~~V~~ 75 (113)
T 3tqn_A 30 GEMIPSIRKISTEYQINP----LTVSKAYQSLLDDNVIE--KRRGLGMLVKA 75 (113)
T ss_dssp TCEECCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEE--EETTTEEEECT
T ss_pred CCcCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEE--EecCCeEEEeC
Confidence 3688 7999999999987 78999999999999984 45778887654
No 250
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=33.67 E-value=2.9e+02 Score=25.48 Aligned_cols=92 Identities=13% Similarity=0.022 Sum_probs=59.4
Q ss_pred HHhhccHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcCCCCccCChhHHHHHHHHHHHHHH
Q 011352 172 YELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRT 251 (488)
Q Consensus 172 ~e~~~~l~~~r~~L~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~~pe~~~~~~~v~Y~YY~Gri~~ 251 (488)
+-..|+..++...+..++.... .. .-....+-+.|+..|+++.|...+.+..-- .| +........|..+.
T Consensus 127 ~~~~g~~~~A~~~~~~al~~~P----~~--~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p--~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 127 LMQESNYTDALPLLXDAWQLSN----QN--GEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQ--DTRYQGLVAQIELL 196 (287)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTT----SC--HHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GC--SHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCC----cc--hhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hc--chHHHHHHHHHHHH
Confidence 3346777777766666543221 11 112334557889999999999998876311 11 11233456666677
Q ss_pred HhhcHHHHHHHHHHHHHhCCcc
Q 011352 252 IQLEYTDAKESLLQAARKAPVA 273 (488)
Q Consensus 252 ~~~dy~~A~~~L~~A~~~~P~~ 273 (488)
.++++.+|...|..++...|..
T Consensus 197 ~~~~~~~a~~~l~~al~~~P~~ 218 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAENPED 218 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHCTTC
T ss_pred hhcccCccHHHHHHHHhcCCcc
Confidence 7889999999999999877763
No 251
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=33.45 E-value=3.7e+02 Score=26.69 Aligned_cols=54 Identities=13% Similarity=0.041 Sum_probs=37.0
Q ss_pred HHHHc----cCCHHHHHHHHhcCCCCccCChhHHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHh
Q 011352 210 RNYLH----YNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTI----QLEYTDAKESLLQAARK 269 (488)
Q Consensus 210 r~Yl~----~~~~~~a~~li~~~~~pe~~~~~~~v~Y~YY~Gri~~~----~~dy~~A~~~L~~A~~~ 269 (488)
..|.. .++++.|.....+..-... ..-.+.+|.++.. .+++.+|..+|..|...
T Consensus 191 ~~y~~g~g~~~~~~~A~~~~~~a~~~~~------~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 252 (490)
T 2xm6_A 191 YMYSRGLGVERNDAISAQWYRKSATSGD------ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ 252 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCCcCHHHHHHHHHHHHHCCC------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 45555 6777777776665421111 1235678888886 88999999999999873
No 252
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=33.17 E-value=42 Score=28.93 Aligned_cols=47 Identities=15% Similarity=0.089 Sum_probs=36.6
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCCcEEEEccc
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKET 419 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~G~v~~~~~ 419 (488)
..++.++||..++++. ..++.++..|...|.|...=- ..||.--.+.
T Consensus 29 ~~~~~~~iA~~~~i~~----~~l~kil~~L~~~Glv~s~rG-~GGy~L~~~p 75 (149)
T 1ylf_A 29 SLCTSDYMAESVNTNP----VVIRKIMSYLKQAGFVYVNRG-PGGAGLLKDL 75 (149)
T ss_dssp GGCCHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEC----CCEEESSCG
T ss_pred CCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCcEEEccC-CCceEeCCCh
Confidence 3689999999999987 899999999999999975433 4567654443
No 253
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=32.54 E-value=44 Score=26.41 Aligned_cols=31 Identities=10% Similarity=0.263 Sum_probs=29.3
Q ss_pred ccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcc
Q 011352 370 ISLADVAKKLRLDSANPVADAESIVSKAIRDGAID 404 (488)
Q Consensus 370 IsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~ 404 (488)
++..+||..||++. ..|-..|.+|-.+|+|.
T Consensus 31 ~sa~eLAk~LgiSk----~aVr~~L~~Le~eG~I~ 61 (82)
T 1oyi_A 31 ATAAQLTRQLNMEK----REVNKALYDLQRSAMVY 61 (82)
T ss_dssp EEHHHHHHHSSSCH----HHHHHHHHHHHHHTSSE
T ss_pred CCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEE
Confidence 99999999999988 89999999999999994
No 254
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=32.50 E-value=61 Score=27.21 Aligned_cols=62 Identities=15% Similarity=0.294 Sum_probs=42.3
Q ss_pred ccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCC-cEEEEcccCcccCCccccHHHHHHHHHHHHhhH
Q 011352 370 ISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN-GWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHN 444 (488)
Q Consensus 370 IsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~-G~v~~~~~~dv~s~~ep~~~l~~rI~~~l~l~~ 444 (488)
++.++||.+++++. .++...+.+++..|.|.=.-+... |-+ .+.|+= ..+-.++..++..+.
T Consensus 52 ps~~~LA~~l~~s~----~~V~~~l~~Le~kGlI~~~~~~~~~g~~-----~~~Ydl----~pl~~kL~~~~~~~~ 114 (128)
T 2vn2_A 52 PTPAELAERMTVSA----AECMEMVRRLLQKGMIAIEEHTDEQGIR-----NEKYTL----EPLWEKLVHHLYTQA 114 (128)
T ss_dssp CCHHHHHHTSSSCH----HHHHHHHHHHHHTTSSEECC---------------CEEC----HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEEeEECCCCcE-----EEEEeh----HHHHHHHHHHHHHHH
Confidence 89999999999987 899999999999999944333221 222 234443 567778887776554
No 255
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=32.39 E-value=53 Score=27.18 Aligned_cols=54 Identities=13% Similarity=-0.070 Sum_probs=37.1
Q ss_pred HHHHccCCHHHHHHHHhcCCCCccCChhHHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHh
Q 011352 210 RNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTI----QLEYTDAKESLLQAARK 269 (488)
Q Consensus 210 r~Yl~~~~~~~a~~li~~~~~pe~~~~~~~v~Y~YY~Gri~~~----~~dy~~A~~~L~~A~~~ 269 (488)
..|.....++.|.....+..-.. ...=.|.+|.+|.. .+|+.+|..+|..|...
T Consensus 33 ~~y~~g~~~~~A~~~~~~Aa~~g------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 90 (138)
T 1klx_A 33 LVSNSQINKQKLFQYLSKACELN------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL 90 (138)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHcCC------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC
Confidence 45566666666766665542111 12235788998887 89999999999999873
No 256
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=32.37 E-value=1.1e+02 Score=24.73 Aligned_cols=48 Identities=15% Similarity=0.121 Sum_probs=34.2
Q ss_pred ChhHHHHHHH---HHHHHHHHhhcHHHHHHHHHHHHHhCCccchhhHHHHHHH
Q 011352 235 SNQQFCRYLF---YLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKW 284 (488)
Q Consensus 235 ~~~~~v~Y~Y---Y~Gri~~~~~dy~~A~~~L~~A~~~~P~~~~~~~~~alK~ 284 (488)
+....=+||. ..|--.+.++++..|..||..|+.-||+ ......+|+.
T Consensus 12 d~e~~e~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q--P~~LL~i~q~ 62 (95)
T 1om2_A 12 DAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQ--PQQLLQVLQQ 62 (95)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSC--HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHh
Confidence 3444445544 6788888999999999999999998887 2334444443
No 257
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=32.14 E-value=1.6e+02 Score=23.94 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=33.6
Q ss_pred cccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCC
Q 011352 369 RISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN 411 (488)
Q Consensus 369 rIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~ 411 (488)
.++.++||..++++. ..+-.+|.+|...|.|.-.-+..+
T Consensus 47 ~~t~~ela~~l~~~~----~tvs~~l~~Le~~Gli~r~~~~~D 85 (139)
T 3eco_A 47 GLTQNDIAKALQRTG----PTVSNLLRNLERKKLIYRYVDAQD 85 (139)
T ss_dssp CEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEECCC-
T ss_pred CcCHHHHHHHhCCCc----ccHHHHHHHHHHCCCEeecCCCCC
Confidence 789999999999987 889999999999999976665443
No 258
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=32.00 E-value=88 Score=26.54 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=34.9
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCC
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN 411 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~ 411 (488)
..++.++||..++++. ..+-.+|.+|...|+|.-.-+..+
T Consensus 59 ~~~t~~eLa~~l~~~~----~tvs~~l~~Le~~Glv~r~~~~~D 98 (162)
T 3k0l_A 59 PNLSNAKLAERSFIKP----QSANKILQDLLANGWIEKAPDPTH 98 (162)
T ss_dssp TTCCHHHHHHHHTSCG----GGHHHHHHHHHHTTSEEEEECCSS
T ss_pred CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCcCeEecCCCCc
Confidence 5799999999999988 789999999999999977766544
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=31.52 E-value=1.6e+02 Score=34.03 Aligned_cols=52 Identities=12% Similarity=0.165 Sum_probs=37.5
Q ss_pred HHHHHHccCCHHHHHHHHhcCCCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 011352 208 LLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAA 267 (488)
Q Consensus 208 llr~Yl~~~~~~~a~~li~~~~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~ 267 (488)
++...++.+.++.+..+..-.+ .+... .|..|+++...|+|.+|.++|..|-
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~------~~~~~--~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN------SDPIA--VYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC------CCHHH--HHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhhhHHHHHHHhhhcc------CCcHH--HHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 4455667777777777665332 11222 3889999999999999999998874
No 260
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=31.25 E-value=64 Score=26.55 Aligned_cols=39 Identities=10% Similarity=0.222 Sum_probs=34.2
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCC
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHA 410 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~ 410 (488)
..++.++||..+|++. ..+-.+|..|...|.|.-.-+++
T Consensus 40 ~~~t~~ela~~l~~~~----stvs~~l~~L~~~G~v~r~~~~~ 78 (152)
T 1ku9_A 40 KPLTISDIMEELKISK----GNVSMSLKKLEELGFVRKVWIKG 78 (152)
T ss_dssp SCEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEECCTT
T ss_pred CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEEecCC
Confidence 6799999999999987 78999999999999997766544
No 261
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=31.14 E-value=68 Score=26.52 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=32.9
Q ss_pred hccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeC
Q 011352 367 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDH 409 (488)
Q Consensus 367 YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~ 409 (488)
...++.++||..++++. ..+-.+|.+|...|.|.-.-+.
T Consensus 48 ~~~~~~~~la~~l~i~~----~~vs~~l~~Le~~glv~r~~~~ 86 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRS----SNLAALLRELERGGLIVRHADP 86 (147)
T ss_dssp TSCBCHHHHHHHTTCCH----HHHHHHHHHHHHTTSEEEEC--
T ss_pred CCCCCHHHHHHHhCCCh----hhHHHHHHHHHHCCCEeeCCCC
Confidence 46799999999999987 8899999999999999665543
No 262
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=31.09 E-value=57 Score=27.22 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=31.7
Q ss_pred hccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceE
Q 011352 367 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDAT 406 (488)
Q Consensus 367 YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~ 406 (488)
..+++.++||..+|++. ..+-..+..|...|.|...
T Consensus 16 ~~~~~~~ela~~lg~s~----~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 16 DARTPFTEIAKKLGISE----TAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp CTTCCHHHHHHHHTSCH----HHHHHHHHHHHHHTSSCCC
T ss_pred cCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEecc
Confidence 46899999999999987 8899999999999999543
No 263
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=30.76 E-value=97 Score=25.19 Aligned_cols=39 Identities=13% Similarity=0.151 Sum_probs=34.0
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCC
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHA 410 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~ 410 (488)
..++.++||..++++. ..+-.+|.+|...|.|.-.-+..
T Consensus 44 ~~~~~~ela~~l~is~----~~vs~~l~~L~~~gli~~~~~~~ 82 (142)
T 3bdd_A 44 APLHQLALQERLQIDR----AAVTRHLKLLEESGYIIRKRNPD 82 (142)
T ss_dssp CSBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEECSS
T ss_pred CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEecCCCC
Confidence 5799999999999987 88999999999999997666543
No 264
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=30.25 E-value=77 Score=26.00 Aligned_cols=41 Identities=5% Similarity=0.097 Sum_probs=34.8
Q ss_pred hhccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCC
Q 011352 366 SYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHA 410 (488)
Q Consensus 366 ~YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~ 410 (488)
....++.++||..++++. ..+-.+|.+|...|.|.-.-+..
T Consensus 49 ~~~~~t~~~la~~l~~s~----~~vs~~l~~L~~~glv~r~~~~~ 89 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVEG----PTLARLLDGLESQGLVRRLAVAE 89 (146)
T ss_dssp CSSCCBHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEECCBT
T ss_pred cCCCCCHHHHHHHhCCCh----hhHHHHHHHHHHCCCeeecCCCc
Confidence 346799999999999987 88999999999999997665543
No 265
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=29.62 E-value=87 Score=25.45 Aligned_cols=41 Identities=17% Similarity=0.333 Sum_probs=34.9
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCCc
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANG 412 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~G 412 (488)
..++.++||..++++. ..+-.+|.+|...|.|.-.-++.++
T Consensus 51 ~~~t~~ela~~l~~~~----~tvs~~l~~L~~~glv~r~~~~~d~ 91 (140)
T 2nnn_A 51 GPCPQNQLGRLTAMDA----ATIKGVVERLDKRGLIQRSADPDDG 91 (140)
T ss_dssp SSBCHHHHHHHTTCCH----HHHHHHHHHHHHTTCEEEEEETTEE
T ss_pred CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEeeCCCCCC
Confidence 4799999999999987 8899999999999999766655443
No 266
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=29.34 E-value=66 Score=26.93 Aligned_cols=45 Identities=9% Similarity=0.148 Sum_probs=37.7
Q ss_pred hccc-cHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCCcEEEEc
Q 011352 367 YSRI-SLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSK 417 (488)
Q Consensus 367 YsrI-sL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~G~v~~~ 417 (488)
-.+| |..++|..+|++. .-+...+..|..+|.| ...+.+|+.+..
T Consensus 32 G~~lPse~~La~~~~vSr----~tvr~Al~~L~~~Gli--~~~~g~G~~V~~ 77 (126)
T 3by6_A 32 NDQLPSVRETALQEKINP----NTVAKAYKELEAQKVI--RTIPGKGTFITG 77 (126)
T ss_dssp TCEECCHHHHHHHHTCCH----HHHHHHHHHHHHTTSE--EEETTTEEEECS
T ss_pred CCcCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCE--EEecCCeEEEcc
Confidence 3688 8999999999987 7888899999999999 456778887644
No 267
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=29.04 E-value=1.2e+02 Score=25.47 Aligned_cols=48 Identities=13% Similarity=0.217 Sum_probs=39.1
Q ss_pred Hhhccc-cHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCCcEEEEcc
Q 011352 365 ISYSRI-SLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKE 418 (488)
Q Consensus 365 ~~YsrI-sL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~G~v~~~~ 418 (488)
.+=.+| |..++|..+|++. .-|..-+..|..+|.|. .-+.+|+.+...
T Consensus 33 ~pG~~LPser~La~~~gVSr----~tVReAl~~L~~eGlv~--~~~g~G~~V~~~ 81 (134)
T 4ham_A 33 QEGEKILSIREFASRIGVNP----NTVSKAYQELERQEVII--TVKGKGTFIANQ 81 (134)
T ss_dssp CTTCEECCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEE--EETTTEEEECCC
T ss_pred CCCCCCccHHHHHHHHCCCH----HHHHHHHHHHHHCCcEE--EEcCcEEEEeCC
Confidence 344789 6899999999987 78888899999999994 557789877543
No 268
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=29.03 E-value=61 Score=27.73 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=37.7
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCCcEEEEccc
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKET 419 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~G~v~~~~~ 419 (488)
.. +.++||..++++. .-++.++.+|...|.|...=- ..||.--.+.
T Consensus 23 ~~-s~~~IA~~~~i~~----~~l~kIl~~L~~aGlv~s~rG-~GGy~Lar~p 68 (145)
T 1xd7_A 23 KT-SSEIIADSVNTNP----VVVRRMISLLKKADILTSRAG-VPGASLKKDP 68 (145)
T ss_dssp CC-CHHHHHHHHTSCH----HHHHHHHHHHHHTTSEECCSS-SSSCEESSCG
T ss_pred CC-CHHHHHHHHCcCH----HHHHHHHHHHHHCCceEeecC-CCCceecCCH
Confidence 45 9999999999987 899999999999999976554 5677654443
No 269
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=29.01 E-value=59 Score=26.88 Aligned_cols=38 Identities=13% Similarity=0.454 Sum_probs=30.1
Q ss_pred ccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCC
Q 011352 370 ISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN 411 (488)
Q Consensus 370 IsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~ 411 (488)
++.++||..++++. ..+-.+|.+|...|.|.-.-|+.+
T Consensus 52 ~t~~eLa~~l~~s~----~tvs~~l~~L~~~Glv~r~~~~~d 89 (146)
T 3tgn_A 52 LTNSELARRLNVSQ----AAVTKAIKSLVKEGMLETSKDSKD 89 (146)
T ss_dssp CCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEC------
T ss_pred CCHHHHHHHHCCCH----HHHHHHHHHHHHCCCeEeccCCCC
Confidence 99999999999987 889999999999999976655433
No 270
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=28.84 E-value=1.4e+02 Score=23.50 Aligned_cols=37 Identities=11% Similarity=0.123 Sum_probs=32.5
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEee
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVD 408 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id 408 (488)
..++..+||..++++. ..+-..|..|...|.|...-+
T Consensus 33 ~~~~~~ela~~l~is~----~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 33 ADQSASSLATRLPVSR----QAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp SCBCHHHHHHHSSSCH----HHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeeEEec
Confidence 5689999999999987 789999999999999966544
No 271
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=28.83 E-value=53 Score=37.31 Aligned_cols=52 Identities=12% Similarity=0.134 Sum_probs=39.5
Q ss_pred HHHHHHccCCHHHHHHHHhcCCCCccCChhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 011352 208 LLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAA 267 (488)
Q Consensus 208 llr~Yl~~~~~~~a~~li~~~~~pe~~~~~~~v~Y~YY~Gri~~~~~dy~~A~~~L~~A~ 267 (488)
++..++..+.++.+..++.-.+. +-..+ |..|+++...|+|.+|..+|..|-
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~------t~~~~--yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS------DPIAV--YLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS------SHHHH--HHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC------ChHHH--HHHHHHHHHcCCHHHHHHHHHHHh
Confidence 45567778888888877765431 11233 899999999999999999998874
No 272
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=28.65 E-value=71 Score=26.36 Aligned_cols=40 Identities=10% Similarity=0.156 Sum_probs=28.3
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCC
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN 411 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~ 411 (488)
..++.++||..++++. ..+-.+|.+|...|.|.-.-+..+
T Consensus 50 ~~~t~~eLa~~l~~~~----~tvs~~l~~L~~~Glv~r~~~~~D 89 (142)
T 3ech_A 50 RGLNLQDLGRQMCRDK----ALITRKIRELEGRNLVRRERNPSD 89 (142)
T ss_dssp TTCCHHHHHHHHC-------CHHHHHHHHHHHTTSEEC------
T ss_pred CCcCHHHHHHHhCCCH----HHHHHHHHHHHHCCCEeeccCCCC
Confidence 4799999999999998 789999999999999966555443
No 273
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=28.61 E-value=56 Score=28.89 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=26.0
Q ss_pred HHHHHHHHHHh-----------hcHHHHHHHHHHHHHhCCc
Q 011352 243 LFYLGKIRTIQ-----------LEYTDAKESLLQAARKAPV 272 (488)
Q Consensus 243 ~YY~Gri~~~~-----------~dy~~A~~~L~~A~~~~P~ 272 (488)
+|.+|..|... ++|.+|..+|..|+.--|.
T Consensus 83 ~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 83 VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 67888888876 4999999999999997776
No 274
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=28.44 E-value=92 Score=25.88 Aligned_cols=46 Identities=15% Similarity=0.256 Sum_probs=37.6
Q ss_pred hhcccc-HHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCCcEEEEc
Q 011352 366 SYSRIS-LADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSK 417 (488)
Q Consensus 366 ~YsrIs-L~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~G~v~~~ 417 (488)
+-.+++ ..++|..+|++. .-|...+..+..+|.| ...+.+|+.+..
T Consensus 33 ~g~~Lps~~~La~~~~vSr----~tvr~Al~~L~~~G~i--~~~~g~G~~V~~ 79 (125)
T 3neu_A 33 GEDKLPSVREMGVKLAVNP----NTVSRAYQELERAGYI--YAKRGMGSFVTS 79 (125)
T ss_dssp TTCBCCCHHHHHHHHTCCH----HHHHHHHHHHHHTTSE--EEETTTEEEECC
T ss_pred CCCCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCeE--EEecCCEEEEec
Confidence 347885 999999999987 7899999999999999 345667877654
No 275
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=28.34 E-value=1.1e+02 Score=24.82 Aligned_cols=40 Identities=10% Similarity=0.292 Sum_probs=33.8
Q ss_pred hccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCC
Q 011352 367 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHA 410 (488)
Q Consensus 367 YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~ 410 (488)
...++.++||..++++. ..+-.+|.+|...|.|.-.-+..
T Consensus 45 ~~~~~~~ela~~l~~~~----~tvs~~l~~L~~~gli~r~~~~~ 84 (139)
T 3bja_A 45 SGKVSMSKLIENMGCVP----SNMTTMIQRMKRDGYVMTEKNPN 84 (139)
T ss_dssp SCSEEHHHHHHHCSSCC----TTHHHHHHHHHHTTSEEEEECSS
T ss_pred cCCcCHHHHHHHHCCCh----hHHHHHHHHHHHCCCeeeccCCC
Confidence 35799999999999988 78999999999999997655543
No 276
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=26.99 E-value=59 Score=26.21 Aligned_cols=37 Identities=11% Similarity=0.188 Sum_probs=32.6
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEee
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVD 408 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id 408 (488)
..++.++||..+|++. ..+-..+..|...|.|...-+
T Consensus 37 ~~~s~~eLa~~lgis~----stvs~~L~~L~~~GlV~~~~~ 73 (108)
T 2kko_A 37 GERAVEAIATATGMNL----TTASANLQALKSGGLVEARRE 73 (108)
T ss_dssp CCEEHHHHHHHHTCCH----HHHHHHHHHHHHHTSEEEEEE
T ss_pred CCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEEEEe
Confidence 5689999999999987 889999999999999976644
No 277
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=26.81 E-value=67 Score=26.25 Aligned_cols=39 Identities=10% Similarity=0.176 Sum_probs=33.6
Q ss_pred cccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCC
Q 011352 369 RISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN 411 (488)
Q Consensus 369 rIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~ 411 (488)
.++.++||..++++. ..+-.+|.+|...|.|.-.-+..+
T Consensus 50 ~~~~~ela~~l~~~~----~tvs~~l~~Le~~Gli~r~~~~~d 88 (141)
T 3bro_A 50 EVLQRDLESEFSIKS----STATVLLQRMEIKKLLYRKVSGKD 88 (141)
T ss_dssp CCBHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEECSSC
T ss_pred CcCHHHHHHHHCCCc----chHHHHHHHHHHCCCEEeeCCCcC
Confidence 699999999999987 889999999999999976655443
No 278
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=26.76 E-value=3.5e+02 Score=24.23 Aligned_cols=86 Identities=13% Similarity=0.089 Sum_probs=44.4
Q ss_pred HHcccCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH------HHHHHHHHHhhccHHHHHH---------HHHHHHHHhh
Q 011352 129 LIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARL------YFYYSLCYELTGDLAEIRG---------NLLALHRIAT 193 (488)
Q Consensus 129 l~d~~~~~~A~~~~~~lv~~l~~~~~r~ld~l~ak~------~~y~s~~~e~~~~l~~~r~---------~L~~~~rta~ 193 (488)
.+.-|+++.|++++..+ +....|.-.+.. +-.-.+|+...+++....- -|...-+.|.
T Consensus 15 AL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~ 87 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQ 87 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45668888888886554 333344333222 2234555555565544321 0111112222
Q ss_pred hcCCcccHHHHHHHHHHHHHccCCHHHHHHHHhcC
Q 011352 194 LRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA 228 (488)
Q Consensus 194 ~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~ 228 (488)
.+.+ .|.-|.+|+-.|+++.|-+++.++
T Consensus 88 ~~g~-------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 88 TRED-------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HTTC-------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HCcc-------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 2222 345667788888888887765544
No 279
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=26.29 E-value=93 Score=25.60 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=32.5
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCC
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHA 410 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~ 410 (488)
..++.++||..++++. ..+-.+|.+|...|.|.-.-|+.
T Consensus 50 ~~~t~~eLa~~l~~~~----~~vs~~l~~L~~~Glv~r~~~~~ 88 (143)
T 3oop_A 50 EPISQKEIALWTKKDT----PTVNRIVDVLLRKELIVREISTE 88 (143)
T ss_dssp SSEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEC---
T ss_pred CCcCHHHHHHHHCCCH----hhHHHHHHHHHHCCCeeccCCCc
Confidence 6799999999999987 88999999999999997665443
No 280
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=26.08 E-value=1.3e+02 Score=24.34 Aligned_cols=41 Identities=10% Similarity=0.153 Sum_probs=34.8
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCCc
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANG 412 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~G 412 (488)
..++.++||..++++. ..+-.+|.+|...|.|.-.-+..++
T Consensus 49 ~~~t~~ela~~l~~s~----~~vs~~l~~Le~~glv~r~~~~~d~ 89 (142)
T 2fbi_A 49 GEMESYQLANQACILR----PSMTGVLARLERDGIVRRWKAPKDQ 89 (142)
T ss_dssp CSEEHHHHHHHTTCCH----HHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred CCCCHHHHHHHHCCCH----hHHHHHHHHHHHCCCEEeecCCCCC
Confidence 4699999999999987 8899999999999999766665443
No 281
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=26.07 E-value=1.1e+02 Score=25.25 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=33.1
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCC
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHA 410 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~ 410 (488)
..++.++||..++++. ..+-.+|.+|...|.|.-.-+..
T Consensus 44 ~~~t~~eLa~~l~~~~----~tvs~~l~~Le~~Glv~r~~~~~ 82 (145)
T 3g3z_A 44 GSRTQKHIGEKWSLPK----QTVSGVCKTLAGQGLIEWQEGEQ 82 (145)
T ss_dssp CSBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEECCCSS
T ss_pred CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEeeccCCC
Confidence 4599999999999987 88999999999999996554433
No 282
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=26.00 E-value=1.5e+02 Score=23.92 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=35.2
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCCc
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANG 412 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~G 412 (488)
..++.++||..++++. ..+-.+|.+|...|.|.-.-+..++
T Consensus 42 ~~~~~~ela~~l~~s~----~tvs~~l~~L~~~glv~~~~~~~d~ 82 (138)
T 3bpv_A 42 PGIKQDELATFFHVDK----GTIARTLRRLEESGFIEREQDPENR 82 (138)
T ss_dssp TTCBHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEeecCCCCc
Confidence 6789999999999987 8899999999999999776665444
No 283
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=25.97 E-value=2.4e+02 Score=22.07 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=33.7
Q ss_pred cccCHHHHHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHHHHHhhcc
Q 011352 131 DKKRYNEAKACSSASIARLKNM-----NRRTVDVLAARLYFYYSLCYELTGD 177 (488)
Q Consensus 131 d~~~~~~A~~~~~~lv~~l~~~-----~~r~ld~l~ak~~~y~s~~~e~~~~ 177 (488)
..|+|++|+.+....+..+... |....+.+..|+--|..|+-++...
T Consensus 28 ~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr~K~~eYl~RAE~LK~~ 79 (86)
T 4a5x_A 28 SESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAENIKKY 79 (86)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999988775433 2334567778888888887666443
No 284
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=25.88 E-value=1.1e+02 Score=26.12 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=34.4
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCC
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN 411 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~ 411 (488)
..++.++||..++++. ..+-.+|.+|...|.|.-.-+..+
T Consensus 58 ~~~t~~eLa~~l~is~----~tvs~~l~~Le~~GlV~r~~~~~D 97 (168)
T 2nyx_A 58 GPINLATLATLLGVQP----SATGRMVDRLVGAELIDRLPHPTS 97 (168)
T ss_dssp CSEEHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEEECSSC
T ss_pred CCCCHHHHHHHhCCCH----HHHHHHHHHHHHCCCEEeccCCCC
Confidence 5799999999999987 889999999999999976665443
No 285
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=25.79 E-value=1.2e+02 Score=23.53 Aligned_cols=30 Identities=13% Similarity=0.088 Sum_probs=28.5
Q ss_pred ccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCc
Q 011352 370 ISLADVAKKLRLDSANPVADAESIVSKAIRDGAI 403 (488)
Q Consensus 370 IsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I 403 (488)
++.++||..++++. ..+-.+|..|...|+|
T Consensus 31 ~t~~eLa~~l~i~~----~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 31 VYIQYIASKVNSPH----SYVWLIIKKFEEAKMV 60 (95)
T ss_dssp EEHHHHHHHSSSCH----HHHHHHHHHHHHTTSE
T ss_pred cCHHHHHHHHCcCH----HHHHHHHHHHHHCcCc
Confidence 89999999999987 8899999999999999
No 286
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=25.61 E-value=1.2e+02 Score=24.92 Aligned_cols=39 Identities=15% Similarity=0.394 Sum_probs=33.7
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCC
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHA 410 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~ 410 (488)
..++.++||..++++. ..+-.+|.+|...|.|.-.-+..
T Consensus 55 ~~~t~~ela~~l~~~~----~tvs~~l~~Le~~Glv~r~~~~~ 93 (150)
T 2rdp_A 55 GDLTVGELSNKMYLAC----STTTDLVDRMERNGLVARVRDEH 93 (150)
T ss_dssp CSBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEECCC
T ss_pred CCCCHHHHHHHHCCCc----hhHHHHHHHHHHCCCeeecCCCC
Confidence 5799999999999987 88999999999999997665543
No 287
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=25.61 E-value=1.1e+02 Score=25.37 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=33.2
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeC
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDH 409 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~ 409 (488)
..++.++||..++++. ..+-.+|.+|...|.|.-.-+.
T Consensus 53 ~~~t~~ela~~l~~~~----~~vs~~l~~Le~~Glv~r~~~~ 90 (152)
T 3bj6_A 53 PGATAPQLGAALQMKR----QYISRILQEVQRAGLIERRTNP 90 (152)
T ss_dssp TTEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEECCS
T ss_pred CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCeeecCCc
Confidence 5789999999999987 8899999999999999665554
No 288
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=25.03 E-value=1.4e+02 Score=23.19 Aligned_cols=49 Identities=14% Similarity=0.088 Sum_probs=37.1
Q ss_pred Hc-ccCHHHHHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHHHHHhhccH
Q 011352 130 ID-KKRYNEAKACSSASIARLKNM-----NRRTVDVLAARLYFYYSLCYELTGDL 178 (488)
Q Consensus 130 ~d-~~~~~~A~~~~~~lv~~l~~~-----~~r~ld~l~ak~~~y~s~~~e~~~~l 178 (488)
.| .|+|.+|+.+-...++.+... |....+.+..|+-=|..|+.++...+
T Consensus 21 ~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~RAE~Lk~~l 75 (83)
T 2v6y_A 21 ADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRISYLEKVL 75 (83)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34 589999999998888775432 33467889999999999988876554
No 289
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=24.88 E-value=1.4e+02 Score=23.09 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=32.0
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEe
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATV 407 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~I 407 (488)
..++.++|+..+|++. ..+-..+..|...|.|...-
T Consensus 35 ~~~~~~ela~~l~is~----~tvs~~L~~L~~~Glv~~~~ 70 (98)
T 3jth_A 35 QELSVGELCAKLQLSQ----SALSQHLAWLRRDGLVTTRK 70 (98)
T ss_dssp SCEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEC
T ss_pred CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEEEE
Confidence 5789999999999987 78999999999999996653
No 290
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=24.83 E-value=2.2e+02 Score=23.70 Aligned_cols=40 Identities=15% Similarity=0.311 Sum_probs=33.8
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCC
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN 411 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~ 411 (488)
..++.++||..++++. ..+-.+|.+|...|.|.-.-+..+
T Consensus 63 ~~~t~~eLa~~l~~~~----~tvs~~l~~Le~~Glv~r~~~~~D 102 (159)
T 3s2w_A 63 DGINQESLSDYLKIDK----GTTARAIQKLVDEGYVFRQRDEKD 102 (159)
T ss_dssp CSEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEECC--
T ss_pred CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEEecCCCC
Confidence 5789999999999987 899999999999999976665543
No 291
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=24.64 E-value=1.3e+02 Score=24.65 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=33.5
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCC
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHA 410 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~ 410 (488)
..++.++||..++++. ..+-.+|.+|...|.|.-.-+..
T Consensus 42 ~~~t~~~la~~l~~s~----~~vs~~l~~Le~~gli~r~~~~~ 80 (144)
T 1lj9_A 42 PGIIQEKIAELIKVDR----TTAARAIKRLEEQGFIYRQEDAS 80 (144)
T ss_dssp TTEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEECSS
T ss_pred cCcCHHHHHHHHCCCH----hHHHHHHHHHHHCCCEEeecCCC
Confidence 4689999999999987 88999999999999997665543
No 292
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=24.62 E-value=58 Score=24.06 Aligned_cols=33 Identities=9% Similarity=0.222 Sum_probs=29.7
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcc
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAID 404 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~ 404 (488)
--|.++++++++|++. ++|-..+.+|=.+|.|.
T Consensus 24 GildI~~~a~kygV~k----deV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 24 GFLDIEHFSKVYGVEK----QEVVKLLEALKNKGLIA 56 (59)
T ss_dssp SEEEHHHHHHHHCCCH----HHHHHHHHHHHHTTSEE
T ss_pred CEEeHHHHHHHhCCCH----HHHHHHHHHHHHCCCee
Confidence 4578999999999998 99999999999999983
No 293
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=24.49 E-value=54 Score=27.18 Aligned_cols=40 Identities=13% Similarity=0.292 Sum_probs=32.5
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCC
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN 411 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~ 411 (488)
..++.++||..++++. ..+-.+|.+|...|.|.-.-|+.+
T Consensus 49 ~~~t~~eLa~~l~~~~----~tvs~~l~~L~~~Glv~r~~~~~D 88 (140)
T 3hsr_A 49 EKLNIKKLGERVFLDS----GTLTPLLKKLEKKDYVVRTREEKD 88 (140)
T ss_dssp CEEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEC----
T ss_pred CCcCHHHHHHHHCCCh----hhHHHHHHHHHHCCCeEecCCCCC
Confidence 5789999999999987 899999999999999976665443
No 294
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=24.38 E-value=1.7e+02 Score=22.84 Aligned_cols=47 Identities=17% Similarity=0.111 Sum_probs=34.4
Q ss_pred HHc-ccCHHHHHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHHHHHhh
Q 011352 129 LID-KKRYNEAKACSSASIARLKNM-----NRRTVDVLAARLYFYYSLCYELT 175 (488)
Q Consensus 129 l~d-~~~~~~A~~~~~~lv~~l~~~-----~~r~ld~l~ak~~~y~s~~~e~~ 175 (488)
-.| .|+|++|+.+-...++.+... |....+.+..|+-=|..|+.++.
T Consensus 28 e~D~~g~y~eAl~lY~~aie~l~~alk~e~d~~~k~~ir~K~~eY~~RAE~LK 80 (83)
T 2w2u_A 28 KADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRRIEVLK 80 (83)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTSSTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345 589999999998888775432 34466788888888888877653
No 295
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=24.34 E-value=2.5e+02 Score=21.75 Aligned_cols=37 Identities=5% Similarity=0.239 Sum_probs=32.5
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEee
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVD 408 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id 408 (488)
...+..+|+..+|++. ..+-..+..|...|.|...-+
T Consensus 35 ~~~~~~ela~~l~is~----~tvs~~L~~L~~~Glv~~~~~ 71 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQ----PTLSQQLGVLRESGIVETRRN 71 (102)
T ss_dssp CCBCHHHHHHHHTCCT----THHHHHHHHHHHTTSEEEECS
T ss_pred CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEEEEe
Confidence 5689999999999998 789999999999999976554
No 296
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=24.27 E-value=62 Score=27.28 Aligned_cols=39 Identities=15% Similarity=0.403 Sum_probs=31.8
Q ss_pred hccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeC
Q 011352 367 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDH 409 (488)
Q Consensus 367 YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~ 409 (488)
...++.++||..++++. ..+-.+|.+|...|.|.-.-+.
T Consensus 60 ~~~~~~~ela~~l~i~~----~tvs~~l~~Le~~Gli~r~~~~ 98 (160)
T 3boq_A 60 PDGLSMGKLSGALKVTN----GNVSGLVNRLIKDGMVVKAMSA 98 (160)
T ss_dssp TTCEEHHHHHHHCSSCC----SCHHHHHHHHHHHTSEEEC---
T ss_pred CCCCCHHHHHHHHCCCh----hhHHHHHHHHHHCCCEEeecCC
Confidence 45799999999999988 6888999999999999654443
No 297
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=24.25 E-value=74 Score=25.71 Aligned_cols=39 Identities=8% Similarity=0.101 Sum_probs=34.4
Q ss_pred ccccHHHHHHHh-cCCCCCChHHHHHHHHHHHHcCCcceEeeCC
Q 011352 368 SRISLADVAKKL-RLDSANPVADAESIVSKAIRDGAIDATVDHA 410 (488)
Q Consensus 368 srIsL~dIa~~L-~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~ 410 (488)
..++..+|+..+ +++. ..+-..|..|...|.|.-.-+..
T Consensus 34 ~~~~~~eLa~~l~~is~----~tvs~~L~~Le~~GlI~r~~~~~ 73 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQ----RVLTDRLREMEKDGLVHRESFNE 73 (112)
T ss_dssp SCBCHHHHHHHSTTCCH----HHHHHHHHHHHHHTSEEEEEECC
T ss_pred CCCCHHHHHHHhccCCH----HHHHHHHHHHHHCCCEEEeecCC
Confidence 578999999999 9887 88999999999999998777654
No 298
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=24.18 E-value=1.7e+02 Score=23.81 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=35.5
Q ss_pred hccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCCc
Q 011352 367 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANG 412 (488)
Q Consensus 367 YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~G 412 (488)
...++.++||..++++. ..+-.+|.+|...|.|.-.-+..++
T Consensus 45 ~~~~~~~~la~~l~~s~----~tvs~~l~~L~~~glv~r~~~~~d~ 86 (145)
T 2a61_A 45 EGPKRPGELSVLLGVAK----STVTGLVKRLEADGYLTRTPDPADR 86 (145)
T ss_dssp HCCBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred cCCCCHHHHHHHHCCCc----hhHHHHHHHHHHCCCeeecCCCCCC
Confidence 35799999999999987 8899999999999999776665443
No 299
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=24.09 E-value=75 Score=28.08 Aligned_cols=40 Identities=15% Similarity=0.348 Sum_probs=35.2
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCC
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN 411 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~ 411 (488)
..++.++||..++++. ..+-.+|.+|...|+|.-.-++.+
T Consensus 56 ~~~t~~eLa~~l~is~----~tvs~~l~~Le~~GlV~r~~~~~D 95 (189)
T 3nqo_A 56 EETTLNNIARKMGTSK----QNINRLVANLEKNGYVDVIPSPHD 95 (189)
T ss_dssp GGCCHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEEECSSC
T ss_pred CCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEeccCCCC
Confidence 4799999999999987 789999999999999987776554
No 300
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=24.06 E-value=1e+02 Score=25.67 Aligned_cols=34 Identities=29% Similarity=0.359 Sum_probs=30.9
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcce
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA 405 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A 405 (488)
..++.++||..++++. ..+-.+|.+|+..|.|.-
T Consensus 54 ~~~t~~eLa~~l~~~~----~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 54 PGISVADLTKRLIITG----SSAAANVDGLISLGLVVK 87 (154)
T ss_dssp TTEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEe
Confidence 5689999999999987 889999999999999965
No 301
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=23.80 E-value=1.5e+02 Score=24.73 Aligned_cols=39 Identities=13% Similarity=0.246 Sum_probs=33.5
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCC
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHA 410 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~ 410 (488)
..++.++||..++++. ..+-.+|.+|...|.|.-.-+..
T Consensus 57 ~~~t~~ela~~l~is~----~tvs~~l~~Le~~Gli~r~~~~~ 95 (154)
T 2eth_A 57 GPKKMKEIAEFLSTTK----SNVTNVVDSLEKRGLVVREMDPV 95 (154)
T ss_dssp CCBCHHHHHHHTTSCH----HHHHHHHHHHHHTTSEEEEECTT
T ss_pred CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEeeCCCC
Confidence 4799999999999987 78999999999999997665443
No 302
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=23.66 E-value=1.9e+02 Score=22.29 Aligned_cols=62 Identities=21% Similarity=0.214 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHHHHHhhccH
Q 011352 117 LEIYCYLLVLIFLID-KKRYNEAKACSSASIARLKNM-----NRRTVDVLAARLYFYYSLCYELTGDL 178 (488)
Q Consensus 117 ~e~~~~ll~~~~l~d-~~~~~~A~~~~~~lv~~l~~~-----~~r~ld~l~ak~~~y~s~~~e~~~~l 178 (488)
.+-.+.++..---.| .|+|++|+.+....+..+... +....+.+..|+--|..|+-++...+
T Consensus 10 l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l~~k~~eYl~RAE~Lk~~l 77 (85)
T 2v6x_A 10 LTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRAEQLKKHL 77 (85)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444433444 589999999999988774432 23345678888888888887765543
No 303
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=23.63 E-value=1e+02 Score=25.47 Aligned_cols=39 Identities=23% Similarity=0.203 Sum_probs=31.3
Q ss_pred hccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeC
Q 011352 367 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDH 409 (488)
Q Consensus 367 YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~ 409 (488)
...++.++||..++++. ..+-.+|.+|...|.|.-.-+.
T Consensus 52 ~~~~t~~ela~~l~~~~----~tvs~~l~~Le~~Glv~r~~~~ 90 (148)
T 3nrv_A 52 ASDCSVQKISDILGLDK----AAVSRTVKKLEEKKYIEVNGHS 90 (148)
T ss_dssp SSSBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEC----
T ss_pred CCCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEeecCC
Confidence 35899999999999987 8899999999999999655443
No 304
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=23.62 E-value=1.3e+02 Score=25.02 Aligned_cols=39 Identities=8% Similarity=0.250 Sum_probs=33.6
Q ss_pred hccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeC
Q 011352 367 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDH 409 (488)
Q Consensus 367 YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~ 409 (488)
...++.++||..++++. ..+-.+|.+|...|.|.-.-+.
T Consensus 49 ~~~~t~~ela~~l~~s~----~tvs~~l~~Le~~glv~r~~~~ 87 (155)
T 1s3j_A 49 HGSLKVSEIAERMEVKP----SAVTLMADRLEQKNLIARTHNT 87 (155)
T ss_dssp HSEEEHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEEECS
T ss_pred cCCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEeecCCC
Confidence 35789999999999987 8899999999999999766554
No 305
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=23.26 E-value=1.2e+02 Score=25.49 Aligned_cols=44 Identities=23% Similarity=0.312 Sum_probs=37.0
Q ss_pred ccc-cHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCCcEEEEc
Q 011352 368 SRI-SLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSK 417 (488)
Q Consensus 368 srI-sL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~G~v~~~ 417 (488)
.+| |..++|..+|++. .-|...+..|..+|.| ...+.+|+.+..
T Consensus 26 ~~LPse~~La~~~gvSr----~tVr~Al~~L~~~Gli--~~~~g~G~~V~~ 70 (129)
T 2ek5_A 26 QRVPSTNELAAFHRINP----ATARNGLTLLVEAGIL--YKKRGIGMFVSA 70 (129)
T ss_dssp SCBCCHHHHHHHTTCCH----HHHHHHHHHHHTTTSE--EEETTTEEEECT
T ss_pred CcCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCcE--EEecCCEEEEec
Confidence 788 7999999999986 7888899999999998 456778887644
No 306
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=23.10 E-value=2.6e+02 Score=28.80 Aligned_cols=61 Identities=10% Similarity=-0.047 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHhcCCCCccCChhHHHHHHHHHHHHH--HHhhcHHHHHHHHHHHHH
Q 011352 203 TLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIR--TIQLEYTDAKESLLQAAR 268 (488)
Q Consensus 203 ~l~n~llr~Yl~~~~~~~a~~li~~~~~pe~~~~~~~v~Y~YY~Gri~--~~~~dy~~A~~~L~~A~~ 268 (488)
...|.+++.|.+.|.++.|..+++.+.--.-.| +..+ |...|. +..+++.+|.+.|..-..
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P--d~~t---yn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP--RLRS---YGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC--CHHH---HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--ccce---ehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 446778899999999999999888752110011 2223 334443 347788888887776554
No 307
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=22.99 E-value=1.3e+02 Score=25.36 Aligned_cols=38 Identities=11% Similarity=0.187 Sum_probs=32.8
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeC
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDH 409 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~ 409 (488)
..++.++||..++++. ..+-.+|.+|...|.|.-.-+.
T Consensus 65 ~~~t~~ela~~l~is~----~tvs~~l~~Le~~Gli~r~~~~ 102 (162)
T 3cjn_A 65 DGLPIGTLGIFAVVEQ----STLSRALDGLQADGLVRREVDS 102 (162)
T ss_dssp CSEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEEC-
T ss_pred CCCCHHHHHHHHCCCh----hHHHHHHHHHHHCCCEEecCCC
Confidence 5789999999999987 8899999999999999765544
No 308
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=22.87 E-value=1.8e+02 Score=22.97 Aligned_cols=37 Identities=14% Similarity=0.176 Sum_probs=32.2
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEee
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVD 408 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id 408 (488)
..+++.+||..+|++. ..+-..+..|...|.|...-+
T Consensus 38 ~~~~~~ela~~l~is~----stvs~~L~~L~~~Glv~~~~~ 74 (106)
T 1r1u_A 38 SEASVGHISHQLNLSQ----SNVSHQLKLLKSVHLVKAKRQ 74 (106)
T ss_dssp CCBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEEEEe
Confidence 5689999999999987 789999999999999966543
No 309
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=22.86 E-value=1.1e+02 Score=25.47 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=30.9
Q ss_pred hccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcce
Q 011352 367 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA 405 (488)
Q Consensus 367 YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A 405 (488)
...++.++||..++++. ..+-.+|.+|...|.|.-
T Consensus 20 ~~~~~~~ela~~l~vs~----~tvs~~l~~Le~~Glv~r 54 (142)
T 1on2_A 20 KGYARVSDIAEALAVHP----SSVTKMVQKLDKDEYLIY 54 (142)
T ss_dssp HSSCCHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEE
T ss_pred cCCCCHHHHHHHhCCCH----HHHHHHHHHHHHCCCEEE
Confidence 46799999999999987 789999999999999843
No 310
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=22.77 E-value=1.2e+02 Score=23.52 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=31.8
Q ss_pred HhhccccHHHHHHHhcCCCCCChH-HHHHHHHHHHHcCCcc
Q 011352 365 ISYSRISLADVAKKLRLDSANPVA-DAESIVSKAIRDGAID 404 (488)
Q Consensus 365 ~~YsrIsL~dIa~~L~l~~~~d~e-eaE~ila~mI~dG~I~ 404 (488)
+.-...+..+||..||++. . .|-..+..|-.+|.|.
T Consensus 21 k~~g~~ta~eiA~~Lgit~----~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 21 FNVSDSSALNLAKNIGLTK----ARDINAVLIDMERQGDVY 57 (79)
T ss_dssp HHTCCEEHHHHHHHHCGGG----HHHHHHHHHHHHHTTSEE
T ss_pred HHcCCcCHHHHHHHcCCCc----HHHHHHHHHHHHHCCCEE
Confidence 3445788999999999998 7 9999999999999995
No 311
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=22.59 E-value=80 Score=27.18 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=32.1
Q ss_pred hccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCC
Q 011352 367 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHA 410 (488)
Q Consensus 367 YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~ 410 (488)
...++.++||..++++. ..+-.+|.+|...|+|.-.-|..
T Consensus 66 ~~~~t~~eLa~~l~i~~----~tvs~~l~~Le~~GlV~r~~~~~ 105 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIEQ----PSLVRTLDQLEDKGLISRQTCAS 105 (166)
T ss_dssp CSSEEHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEC----
T ss_pred CCCCCHHHHHHHHCCCH----hhHHHHHHHHHHCCCEEeeCCCC
Confidence 35699999999999987 88999999999999997665443
No 312
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=22.55 E-value=1.3e+02 Score=23.56 Aligned_cols=38 Identities=11% Similarity=0.190 Sum_probs=33.2
Q ss_pred HHHHhhccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCc
Q 011352 362 NISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAI 403 (488)
Q Consensus 362 ~i~~~YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I 403 (488)
.+...=+-++-.+||.++|++. .|+.+.+-.|=.+|.|
T Consensus 27 ~LkeaG~PlkageIae~~GvdK----KeVdKaik~LKkEgkI 64 (80)
T 2lnb_A 27 VLTEAGSPVKLAQLVKECQAPK----RELNQVLYRMKKELKV 64 (80)
T ss_dssp HHHHHTSCEEHHHHHHHHTSCH----HHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHHHHHHCCCH----HHHHHHHHHHHHcCCc
Confidence 3445557888999999999999 9999999999999987
No 313
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=22.51 E-value=2.9e+02 Score=23.85 Aligned_cols=43 Identities=12% Similarity=0.197 Sum_probs=34.6
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCCcEEEEcc
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKE 418 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~G~v~~~~ 418 (488)
..++..+||..+|++. +.+-.++.++..+|.|. ++ +|.+...+
T Consensus 162 ~~~t~~~lA~~lg~sr----~tvsR~l~~l~~~g~I~--~~--~~~i~i~d 204 (216)
T 4ev0_A 162 FQIRHHELAALAGTSR----ETVSRVLHALAEEGVVR--LG--PGTVEVRE 204 (216)
T ss_dssp EECCHHHHHHHHTSCH----HHHHHHHHHHHHTTSEE--EE--TTEEEESC
T ss_pred CCCCHHHHHHHhCCCH----HHHHHHHHHHHHCCCEE--ec--CCEEEEeC
Confidence 4678899999999987 89999999999999994 32 45555543
No 314
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=22.33 E-value=88 Score=26.12 Aligned_cols=40 Identities=13% Similarity=0.288 Sum_probs=31.3
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCC
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN 411 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~ 411 (488)
..++.++||..++++. ..+-.+|.+|...|.|.-.-++.+
T Consensus 54 ~~~~~~eLa~~l~~~~----~~vs~~l~~L~~~Glv~r~~~~~D 93 (149)
T 4hbl_A 54 NPQTLNSIGRHLDLSS----NTLTPMLKRLEQSGWVKRERQQSD 93 (149)
T ss_dssp SSEEHHHHHHHHTCCH----HHHHHHHHHHHHHTSEEC------
T ss_pred CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEeeCCCCCC
Confidence 6789999999999987 889999999999999966555433
No 315
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.33 E-value=1.6e+02 Score=31.12 Aligned_cols=75 Identities=20% Similarity=0.186 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhh
Q 011352 116 ELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMN-RRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATL 194 (488)
Q Consensus 116 ~~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~-~r~ld~l~ak~~~y~s~~~e~~~~l~~~r~~L~~~~rta~~ 194 (488)
+....++.+.+..++..+.|+.|.++..+.. |- ....+...++.+||..+++-..++..+|...|..++|.|..
T Consensus 228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~-----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 228 ETKAMLINLILRDFLNNGEVDSASDFISKLE-----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC-----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred chhHHHHHHHHHHHHccCcHHHHHHHHhcCc-----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 4445555566666667788988877766542 21 11223344677888999999999999999999999988754
Q ss_pred c
Q 011352 195 R 195 (488)
Q Consensus 195 ~ 195 (488)
.
T Consensus 303 ~ 303 (523)
T 4b4t_S 303 N 303 (523)
T ss_dssp S
T ss_pred c
Confidence 3
No 316
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=22.12 E-value=1.2e+02 Score=25.27 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=32.9
Q ss_pred hccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCC
Q 011352 367 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHA 410 (488)
Q Consensus 367 YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~ 410 (488)
...++.++||..++++. ..+-.+|.+|...|.|.-.-+..
T Consensus 59 ~~~~t~~ela~~l~~s~----~tvs~~l~~Le~~glv~r~~~~~ 98 (153)
T 2pex_A 59 TDERSVSEIGERLYLDS----ATLTPLLKRLQAAGLVTRTRAAS 98 (153)
T ss_dssp SCSEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEC---
T ss_pred CCCcCHHHHHHHhCCCc----ccHHHHHHHHHHCCCEeecCCcc
Confidence 35789999999999987 88999999999999997666543
No 317
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=22.11 E-value=4.5e+02 Score=25.65 Aligned_cols=87 Identities=14% Similarity=0.059 Sum_probs=53.9
Q ss_pred HHHHHHHHHH-----hhcHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHhcCCCCCcchhcchhhhhhhhhHHHHH
Q 011352 243 LFYLGKIRTI-----QLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELT 317 (488)
Q Consensus 243 ~YY~Gri~~~-----~~dy~~A~~~L~~A~~~~P~~~~~~~~~alK~lIlv~LL~G~iP~~~ll~~~~l~~~l~~Y~~L~ 317 (488)
+.++|.+|.. -|+..+|.++|+.|+.-.|.. .+.++...+
T Consensus 202 ~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~-----------------------------------~id~~v~YA 246 (301)
T 3u64_A 202 WNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH-----------------------------------DPDHHITYA 246 (301)
T ss_dssp HHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT-----------------------------------CSHHHHHHH
T ss_pred HHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC-----------------------------------CchHHHHHH
Confidence 4567788877 499999999999999976642 122222233
Q ss_pred HHH-h-cCCHHHHHHHHHHcchhh-hcCcchHHHHHHHHHHHHHhHHHHH
Q 011352 318 NAV-R-IGDLELFKSVAEKFSSTF-SSDRTNNLIVRLRHNVIRTGLRNIS 364 (488)
Q Consensus 318 ~Av-~-~Gdl~~f~~~l~~~~~~f-~~D~~~~Lv~rLr~~vir~~ir~i~ 364 (488)
..+ + .||-+.|.+.+++--..= ..+....+...+++.-++.++.++-
T Consensus 247 ~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 247 DALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILSQKRARWLKAHVQ 296 (301)
T ss_dssp HHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHHHHHHHHhH
Confidence 332 2 477777777777643311 1123456777777777776665543
No 318
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=22.08 E-value=62 Score=27.16 Aligned_cols=38 Identities=16% Similarity=0.234 Sum_probs=31.8
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeC
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDH 409 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~ 409 (488)
..++.++||..++++. ..+-.+|.+|...|.|.-.-+.
T Consensus 56 ~~~t~~ela~~l~i~~----~tvs~~l~~Le~~Glv~r~~~~ 93 (155)
T 3cdh_A 56 DAMMITRLAKLSLMEQ----SRMTRIVDQMDARGLVTRVADA 93 (155)
T ss_dssp SCBCHHHHHHHTTCCH----HHHHHHHHHHHHTTSEEECC--
T ss_pred CCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEeccCC
Confidence 5789999999999987 8899999999999999654443
No 319
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=22.01 E-value=99 Score=25.48 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=30.7
Q ss_pred hccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcc
Q 011352 367 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAID 404 (488)
Q Consensus 367 YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~ 404 (488)
-..+++++||..++++. ..+-..|.+|...|.|.
T Consensus 29 ~~~~s~~ela~~l~is~----~tv~~~l~~Le~~Gli~ 62 (139)
T 2x4h_A 29 GEGAKINRIAKDLKIAP----SSVFEEVSHLEEKGLVK 62 (139)
T ss_dssp TSCBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEE
T ss_pred CCCcCHHHHHHHhCCCh----HHHHHHHHHHHHCCCEE
Confidence 46799999999999987 78999999999999985
No 320
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=21.92 E-value=3.2e+02 Score=22.13 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=31.6
Q ss_pred hccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceE
Q 011352 367 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDAT 406 (488)
Q Consensus 367 YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~ 406 (488)
...+++++||..+|++. ..+-..|..|...|.|...
T Consensus 54 ~~~~s~~eLa~~l~is~----stvs~~L~~L~~~Glv~~~ 89 (122)
T 1u2w_A 54 DEELCVCDIANILGVTI----ANASHHLRTLYKQGVVNFR 89 (122)
T ss_dssp SSCEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEC
T ss_pred CCCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEEE
Confidence 36789999999999987 8899999999999999553
No 321
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=21.85 E-value=1.2e+02 Score=23.41 Aligned_cols=34 Identities=12% Similarity=0.064 Sum_probs=30.7
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcce
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA 405 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A 405 (488)
..++..+||..++++. ..+-..|..|...|.|.-
T Consensus 42 ~~~~~~eLa~~l~is~----~tv~~~L~~L~~~Glv~~ 75 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLSK----KQLDYHLKVLEAGFCIER 75 (96)
T ss_dssp TTCCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEE
Confidence 5689999999999987 789999999999999964
No 322
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=21.63 E-value=1.1e+02 Score=26.18 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=32.8
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCCc
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANG 412 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~G 412 (488)
..++.++||..++++. ..+-.+|.+|...|+|.-.-+..++
T Consensus 61 ~~~t~~eLa~~l~~~~----~tvs~~l~~Le~~Glv~r~~~~~Dr 101 (168)
T 3u2r_A 61 EGMATLQIADRLISRA----PDITRLIDRLDDRGLVLRTRKPENR 101 (168)
T ss_dssp SCEEHHHHHHHC---C----THHHHHHHHHHHTTSEEEEEETTEE
T ss_pred CCcCHHHHHHHHCCCh----hhHHHHHHHHHHCCCEeecCCCCCC
Confidence 4799999999999998 7899999999999999777766544
No 323
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=21.48 E-value=1.6e+02 Score=24.05 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=32.7
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeC
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDH 409 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~ 409 (488)
..++.++||..++++. ..+-.+|.+|...|.|.-.-+.
T Consensus 50 ~~~~~~ela~~l~~~~----~tvs~~l~~L~~~gli~r~~~~ 87 (142)
T 2bv6_A 50 SPVNVKKVVTELALDT----GTVSPLLKRMEQVDLIKRERSE 87 (142)
T ss_dssp SEEEHHHHHHHTTCCT----TTHHHHHHHHHHTTSEEEEECS
T ss_pred CCcCHHHHHHHHCCCh----hhHHHHHHHHHHCCCEEeecCC
Confidence 4689999999999987 6889999999999999665553
No 324
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=20.99 E-value=82 Score=26.25 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=30.6
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCC
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHA 410 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~ 410 (488)
..++.++||..++++. ..+-.+|.+|...|.|.-.-+..
T Consensus 53 ~~~t~~eLa~~l~i~~----~tvs~~l~~Le~~Glv~r~~~~~ 91 (150)
T 3fm5_A 53 EGVNQRGVAATMGLDP----SQIVGLVDELEERGLVVRTLDPS 91 (150)
T ss_dssp TCCCSHHHHHHHTCCH----HHHHHHHHHHHTTTSEEC-----
T ss_pred CCcCHHHHHHHHCCCH----hHHHHHHHHHHHCCCEEeeCCcc
Confidence 3689999999999987 88999999999999996554443
No 325
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=20.95 E-value=21 Score=34.46 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=0.0
Q ss_pred ccccHHHHHHHh-cCCCCCChHHHHHHHHHHHHcCCcceEeeC
Q 011352 368 SRISLADVAKKL-RLDSANPVADAESIVSKAIRDGAIDATVDH 409 (488)
Q Consensus 368 srIsL~dIa~~L-~l~~~~d~eeaE~ila~mI~dG~I~A~Id~ 409 (488)
.=|++.+|+.+| +++. +++...|-.|+.+|.|..+||-
T Consensus 223 ~Gi~~~~I~~~l~~~~~----~~v~~al~~L~~eG~IYsTiDd 261 (270)
T 2pi2_A 223 EGLNFQDLKNQLKHMSV----SSIKQAVDFLSNEGHIYSTVDD 261 (270)
T ss_dssp -------------------------------------------
T ss_pred cCCCHHHHHHHhcCCCH----HHHHHHHHHHHhCCEEeccccc
Confidence 457788999988 5665 8999999999999999999984
No 326
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=20.89 E-value=50 Score=25.74 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=29.7
Q ss_pred cccHHHHHHHhcCCCCCChHH-HHHHHHHHHHcCCcc
Q 011352 369 RISLADVAKKLRLDSANPVAD-AESIVSKAIRDGAID 404 (488)
Q Consensus 369 rIsL~dIa~~L~l~~~~d~ee-aE~ila~mI~dG~I~ 404 (488)
.++.++||..++++. .. +-.+|.+|...|.|.
T Consensus 30 ~~t~~eLa~~l~is~----~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 30 EPSLAEIVKASGVSE----KTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp CCCHHHHHHHHCCCH----HHHHTTHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHCCCc----hHHHHHHHHHHHHCCCee
Confidence 699999999999987 78 899999999999996
No 327
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=20.86 E-value=77 Score=26.77 Aligned_cols=41 Identities=12% Similarity=0.418 Sum_probs=33.7
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCCCc
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANG 412 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~~G 412 (488)
..++.++||..++++. ..+-.+|.+|...|.|.=.-|..++
T Consensus 50 ~~~t~~eLa~~l~~~~----~tvs~~v~~Le~~Glv~r~~~~~Dr 90 (147)
T 4b8x_A 50 GELPMSKIGERLMVHP----TSVTNTVDRLVRSGLVAKRPNPNDG 90 (147)
T ss_dssp GEEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEECC---
T ss_pred CCcCHHHHHHHHCCCH----HHHHHHHHHHHhCCCEEEeecCCcC
Confidence 3589999999999998 8899999999999999777665543
No 328
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=20.51 E-value=1.6e+02 Score=26.54 Aligned_cols=35 Identities=9% Similarity=0.204 Sum_probs=32.5
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceE
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDAT 406 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~ 406 (488)
.+++.++||..+|++. ..+-..+..|...|.|...
T Consensus 32 ~~~s~~eLA~~lglS~----stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 32 KEMTISQLSEILGKTP----QTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp CCBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEE
Confidence 6899999999999987 8899999999999999876
No 329
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=20.40 E-value=6.3e+02 Score=24.93 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=23.2
Q ss_pred HHHHHhcCCHHHHHHHHHHcchhhhcCc
Q 011352 316 LTNAVRIGDLELFKSVAEKFSSTFSSDR 343 (488)
Q Consensus 316 L~~Av~~Gdl~~f~~~l~~~~~~f~~D~ 343 (488)
|+.++..|++..|....++|+....+|+
T Consensus 251 Lllt~q~~~~~lF~~L~~~Y~~~l~rd~ 278 (336)
T 3lpz_A 251 LLLSVQKGSPDLFRQLKSKYEANLNELN 278 (336)
T ss_dssp HHHHHHSCCHHHHHHHHHHTHHHHHTTT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhcH
Confidence 6678888888888888888888777775
No 330
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=20.16 E-value=1.2e+02 Score=25.69 Aligned_cols=39 Identities=10% Similarity=0.277 Sum_probs=32.1
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCC
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHA 410 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~ 410 (488)
..++.++||..++++. ..+-.+|.+|...|.|.-.-+..
T Consensus 66 ~~~t~~eLa~~l~~~~----~~vs~~l~~Le~~Glv~r~~~~~ 104 (161)
T 3e6m_A 66 GELTVGQLATLGVMEQ----STTSRTVDQLVDEGLAARSISDA 104 (161)
T ss_dssp SEEEHHHHHHHTTCCH----HHHHHHHHHHHHTTSEEECC---
T ss_pred CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEeeCCcc
Confidence 5789999999999987 88999999999999996555443
No 331
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=20.11 E-value=1.3e+02 Score=25.07 Aligned_cols=36 Identities=14% Similarity=0.249 Sum_probs=32.0
Q ss_pred hhccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcce
Q 011352 366 SYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA 405 (488)
Q Consensus 366 ~YsrIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A 405 (488)
....++.++||..++++. ..+-.+|.+|...|.|.-
T Consensus 48 ~~~~~t~~eLa~~l~~~~----~~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVNK----AAVSRRVKKLLNAELVKL 83 (151)
T ss_dssp HHSCBCHHHHHHHHCSCS----SHHHHHHHHHHHTTSEEC
T ss_pred HcCCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEe
Confidence 357899999999999998 789999999999999954
No 332
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=20.11 E-value=3.2e+02 Score=21.51 Aligned_cols=65 Identities=18% Similarity=0.204 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHHHHHhhccH
Q 011352 114 LPELEIYCYLLVLIFLID-KKRYNEAKACSSASIARLKNM-----NRRTVDVLAARLYFYYSLCYELTGDL 178 (488)
Q Consensus 114 ~p~~e~~~~ll~~~~l~d-~~~~~~A~~~~~~lv~~l~~~-----~~r~ld~l~ak~~~y~s~~~e~~~~l 178 (488)
.+..+-.+.++..---.| .++|++|+.+....+..+... |....+.+..|+--|..|+.++...+
T Consensus 9 ~~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~RAE~LK~~l 79 (93)
T 1wfd_A 9 DSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENIKKYL 79 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666655566 589999999999988775432 23345678888888888887765544
No 333
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=20.02 E-value=58 Score=26.84 Aligned_cols=39 Identities=13% Similarity=0.167 Sum_probs=33.4
Q ss_pred ccccHHHHHHHhcCCCCCChHHHHHHHHHHHHcCCcceEeeCC
Q 011352 368 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHA 410 (488)
Q Consensus 368 srIsL~dIa~~L~l~~~~d~eeaE~ila~mI~dG~I~A~Id~~ 410 (488)
..++.++||..++++. ..+-.+|.+|...|+|.-.-|+.
T Consensus 52 ~~~t~~eLa~~l~~~~----~tvs~~l~~Le~~Glv~r~~~~~ 90 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQ----PQVVKAVKILSQEDYFDKKRNEH 90 (127)
T ss_dssp SEEEHHHHHHHSSSHH----HHHHHHHHHHHHTTSSCCBCCSS
T ss_pred CCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEecCCCC
Confidence 5689999999999987 78999999999999997655543
Done!