BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011355
(488 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558
Length = 394
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 94/416 (22%), Positives = 165/416 (39%), Gaps = 50/416 (12%)
Query: 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC---LNCSFPTYPISSL 133
+K+ + + +P GG L LA+RGHE+H T+ LN +P ++
Sbjct: 14 MKLKIGITCYPS---VGGSGVVGTELGKQLAERGHEIHFITSGLPFRLNKVYP-----NI 65
Query: 134 YFH---LSKPTAAGYLDQSIVWQQLQTQNSTGKPFDVIHTESVGLRHTRARNLTNVVVSW 190
YFH +++ + Y + + + + D++H + H L ++
Sbjct: 66 YFHEVTVNQYSVFQYPPYDLALASKMAEVAQRENLDILHVH-YAIPHAICAYLAKQMIGE 124
Query: 191 HGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLK 250
T+H I L P S VV V +H + H +++K
Sbjct: 125 RIKIVTTLHGTDITVLGSDPSLNNLIRFGIEQSDVVTAV------SHSLINETH--ELVK 176
Query: 251 RIYMIPEERVHVILNGVDEEV-FKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHP 309
P + + + N +DE V FK D+ KK++GI E+ +++ ++ K K
Sbjct: 177 -----PNKDIQTVYNFIDERVYFKRDMTQ---LKKEYGISESEKILIHISN-FRKVKRVQ 227
Query: 310 LMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLGTN------VIVLGPLDQTRLAM 363
+ +A +++ E D L+ GDGP L N V+ LG D +
Sbjct: 228 DVVQAFAKIVTEVDA-----KLLLVGDGPEFCTILQLVKNLHIEDRVLFLGKQDNVAELL 282
Query: 364 FYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFS-PQVE 422
+ + + ++ + +LEAM G P + TR+ I VI D GYL
Sbjct: 283 AMSDLMLLLS---EKESFGLVLLEAMACGVPCIGTRVGGI-PEVIQHGDTGYLCEVGDTT 338
Query: 423 SVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLCISNDEKNGE 478
V + D E+ G AR+ F + K+ + YE ++ + D+KNG+
Sbjct: 339 GVADQAIQLLKD-EELHRNMGERARESVYEQFRSEKIVSQYETIYYDVLRDDKNGK 393
>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
Length = 414
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 94/416 (22%), Positives = 165/416 (39%), Gaps = 50/416 (12%)
Query: 77 LKIALFVKKWPHRSHAGGLERHALTLHLALAKRGHELHIFTASC---LNCSFPTYPISSL 133
+K+ + + +P GG L LA+RGHE+H T+ LN +P ++
Sbjct: 34 MKLKIGITCYPS---VGGSGVVGTELGKQLAERGHEIHFITSGLPFRLNKVYP-----NI 85
Query: 134 YFH---LSKPTAAGYLDQSIVWQQLQTQNSTGKPFDVIHTESVGLRHTRARNLTNVVVSW 190
YFH +++ + Y + + + + D++H + H L ++
Sbjct: 86 YFHEVTVNQYSVFQYPPYDLALASKMAEVAQRENLDILHVH-YAIPHAICAYLAKQMIGE 144
Query: 191 HGIAYETIHSDIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLK 250
T+H I L P S VV V +H + H +++K
Sbjct: 145 RIKIVTTLHGTDITVLGSDPSLNNLIRFGIEQSDVVTAV------SHSLINETH--ELVK 196
Query: 251 RIYMIPEERVHVILNGVDEEV-FKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHP 309
P + + + N +DE V FK D+ KK++GI E+ +++ ++ K K
Sbjct: 197 -----PNKDIQTVYNFIDERVYFKRDMT---QLKKEYGISESEKILIHIS-NFRKVKRVQ 247
Query: 310 LMFEALKQLLAENDTFRRSTVFLVAGDGPWGARYRDLGTN------VIVLGPLDQTRLAM 363
+ +A +++ E D L+ GDGP L N V+ LG D +
Sbjct: 248 DVVQAFAKIVTEVDA-----KLLLVGDGPEFCTILQLVKNLHIEDRVLFLGKQDNVAELL 302
Query: 364 FYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFS-PQVE 422
+ + + ++ + +LEAM G P + TR+ I VI D GYL
Sbjct: 303 AMSDLMLLLS---EKESFGLVLLEAMACGVPCIGTRVGGI-PEVIQHGDTGYLCEVGDTT 358
Query: 423 SVKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAYERLFLCISNDEKNGE 478
V + D E+ G AR+ F + K+ + YE ++ + D+KNG+
Sbjct: 359 GVADQAIQLLKD-EELHRNMGERARESVYEQFRSEKIVSQYETIYYDVLRDDKNGK 413
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 81/363 (22%), Positives = 146/363 (40%), Gaps = 66/363 (18%)
Query: 85 KWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAG 144
+ P +GG+ + L+ LAK+G E+ I+T + ++P+
Sbjct: 14 QQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRA------------------TRPSQGE 55
Query: 145 YLDQSIVWQQLQTQNSTGKPFDVIHTESVGLRHTRARNLTNVVVSW---HGIAYETIHSD 201
+ V + L+ N P++ + E + T+ T ++S+ + Y+ IHS
Sbjct: 56 IVR---VAENLRVINIAAGPYEGLSKEEL---PTQLAAFTGGMLSFTRREKVTYDLIHSH 109
Query: 202 ---------IIQELLRTPEEPQAYALA--------------ERASKVVEEVKFFPKYAHH 238
++++L R P A+ LA A ++ E+
Sbjct: 110 YWLSGQVGWLLRDLWRIPLIHTAHTLAAVKNSYRDDSDTPESEARRICEQQLVDNADVLA 169
Query: 239 VATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKP--DVAMGKDFKKKFGIPENRSLVL 296
V T + D++ Y +R+ V+ G D E++ P D A + +++ GIP + + V+
Sbjct: 170 VNTQEEMQDLMHH-YDADPDRISVVSPGADVELYSPGNDRATERS-RRELGIPLH-TKVV 226
Query: 297 GMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAG-DGPWGA--RYRDLGTNVIV- 352
GRL KG ++ +A+ L + D R V + G GP YR + + V
Sbjct: 227 AFVGRLQPFKGPQVLIKAVAALF-DRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVE 285
Query: 353 -----LGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSV 407
L P + L Y A DI P+ + +EA SG P++A R+ + +V
Sbjct: 286 KRIRFLDPRPPSELVAVYRAADIVAVPSFN-ESFGLVAMEAQASGTPVIAARVGGLPIAV 344
Query: 408 IVG 410
G
Sbjct: 345 AEG 347
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 81/363 (22%), Positives = 146/363 (40%), Gaps = 66/363 (18%)
Query: 85 KWPHRSHAGGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAG 144
+ P +GG+ + L+ LAK+G E+ I+T + ++P+
Sbjct: 34 QQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRA------------------TRPSQGE 75
Query: 145 YLDQSIVWQQLQTQNSTGKPFDVIHTESVGLRHTRARNLTNVVVSW---HGIAYETIHSD 201
+ V + L+ N P++ + E + T+ T ++S+ + Y+ IHS
Sbjct: 76 IVR---VAENLRVINIAAGPYEGLSKEEL---PTQLAAFTGGMLSFTRREKVTYDLIHSH 129
Query: 202 ---------IIQELLRTPEEPQAYALA--------------ERASKVVEEVKFFPKYAHH 238
++++L R P A+ LA A ++ E+
Sbjct: 130 YWLSGQVGWLLRDLWRIPLIHTAHTLAAVKNSYRDDSDTPESEARRICEQQLVDNADVLA 189
Query: 239 VATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKP--DVAMGKDFKKKFGIPENRSLVL 296
V T + D++ Y +R+ V+ G D E++ P D A + +++ GIP + + V+
Sbjct: 190 VNTQEEMQDLMHH-YDADPDRISVVSPGADVELYSPGNDRATERS-RRELGIPLH-TKVV 246
Query: 297 GMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAG-DGPWGA--RYRDLGTNVIV- 352
GRL KG ++ +A+ L + D R V + G GP YR + + V
Sbjct: 247 AFVGRLQPFKGPQVLIKAVAALF-DRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVE 305
Query: 353 -----LGPLDQTRLAMFYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSV 407
L P + L Y A DI P+ + +EA SG P++A R+ + +V
Sbjct: 306 KRIRFLDPRPPSELVAVYRAADIVAVPSFN-ESFGLVAMEAQASGTPVIAARVGGLPIAV 364
Query: 408 IVG 410
G
Sbjct: 365 AEG 367
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 72/170 (42%), Gaps = 23/170 (13%)
Query: 265 NGVDEEVFKPDVAMGKD-FKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAEND 323
+GVD + F P K +KK G + + V+ RLV KG + +A+ Q++A
Sbjct: 170 SGVDVKRFTPATPEDKSATRKKLGFTDT-TPVIACNSRLVPRKGQDSLIKAMPQVIAA-- 226
Query: 324 TFRRSTVFLVAGDGPWGARYRDLGT----NVIVLGPLDQTRLAMFYNAIDIFVNPT---- 375
R L+ G G + + R L T NV LG L+ + A DIF P
Sbjct: 227 --RPDAQLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRG 284
Query: 376 --LRAQGLDHTVLEAMLSGKPLMA-------TRLASIVGSVIVGTDMGYL 416
L +GL LEA G P++A + G V+ G+D+ L
Sbjct: 285 GGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPATGLVVEGSDVDKL 334
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 72/170 (42%), Gaps = 23/170 (13%)
Query: 265 NGVDEEVFKPDVAMGKD-FKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAEND 323
+GVD + F P K +KK G + + V+ RLV KG + +A+ Q++A
Sbjct: 170 SGVDVKRFTPATPEDKSATRKKLGFTDT-TPVIACNSRLVPRKGQDSLIKAMPQVIAA-- 226
Query: 324 TFRRSTVFLVAGDGPWGARYRDLGT----NVIVLGPLDQTRLAMFYNAIDIFVNPT---- 375
R L+ G G + + R L T NV LG L+ + A DIF P
Sbjct: 227 --RPDAQLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRG 284
Query: 376 --LRAQGLDHTVLEAMLSGKPLMA-------TRLASIVGSVIVGTDMGYL 416
L +GL LEA G P++A + G V+ G+D+ L
Sbjct: 285 GGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPATGLVVEGSDVDKL 334
>pdb|2XMP|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XMP|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XA2|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA2|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
Length = 416
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 364 FYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSPQVES 423
F A D+ + ++RA G TV EAM GKP++ + I ++ G + G+L E+
Sbjct: 312 FQRASDVILQMSIRA-GFGLTVTEAMWKGKPVIGRAVGGIKFQIVDG-ETGFLVRDANEA 369
Query: 424 VKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAY 463
V+ LY + EV ++ G A++R F TK Y
Sbjct: 370 VEVVLYLL--KHPEVSKEMGAKAKERVRKNFIITKHMERY 407
>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
Length = 416
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 364 FYNAIDIFVNPTLRAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFSPQVES 423
F A D+ + ++R +G TV EAM GKP++ + I ++ G + G+L E+
Sbjct: 312 FQRASDVILQMSIR-EGFGLTVTEAMWKGKPVIGRAVGGIKFQIVDG-ETGFLVRDANEA 369
Query: 424 VKKALYGIWADGREVLEKKGLVARKRGLNLFTATKMAAAY 463
V+ LY + EV ++ G A++R F TK Y
Sbjct: 370 VEVVLYLL--KHPEVSKEMGAKAKERVRKNFIITKHMERY 407
>pdb|2GEJ|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp-Man
pdb|2GEK|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp
Length = 406
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 140/372 (37%), Gaps = 64/372 (17%)
Query: 93 GGLERHALTLHLALAKRGHELHIFTASCLNCSFPTYPISSLYFHLSKPTAAGYLDQSIVW 152
GG++ H L L L GHE+ + + + P Y +S K Y + S+
Sbjct: 35 GGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYVVSG-----GKAVPIPY-NGSVAR 88
Query: 153 QQL--QTQNSTGK-----PFDVIH-----TESVGLRHTRARNLTNVVVSWHGIAYETIHS 200
+ T K FDV+H S+ + +A +V ++H +++
Sbjct: 89 LRFGPATHRKVKKWIAEGDFDVLHIHEPNAPSLSMLALQAAE-GPIVATFHTSTTKSLTL 147
Query: 201 DIIQELLRTPEEPQAYALAERASKVVEEVKFFPKYAHHVATSDHCGDVLKRIYM--IPEE 258
+ Q +LR + K +A SD + +R M + +
Sbjct: 148 SVFQGILR---------------------PYHEKIIGRIAVSD----LARRWQMEALGSD 182
Query: 259 RVHVILNGVDEEVFKPDVAMGKDFKKKFGIPENRSLVLGMAGRLVKDKGHPLMFEALKQL 318
V I NGVD VA D G P VL + KG ++ AL +L
Sbjct: 183 AVE-IPNGVD-------VASFADAPLLDGYPREGRTVLFLGRYDEPRKGMAVLLAALPKL 234
Query: 319 LAENDTFRRSTVFLVA-GD-GPWGARYRDLGTNVIVLGPLDQTRLAMFYNAIDIFVNPTL 376
+A F + +V GD + DL ++ LG +D A + D++ P L
Sbjct: 235 VAR---FPDVEILIVGRGDEDELREQAGDLAGHLRFLGQVDDATKASAMRSADVYCAPHL 291
Query: 377 RAQGLDHTVLEAMLSGKPLMATRLASIVGSVIVGTDMGYLFS-PQVESVKKALYGIWADG 435
+ ++EAM +G ++A+ L + V+ D G L + + AL GI D
Sbjct: 292 GGESFGIVLVEAMAAGTAVVASDLDAFR-RVLADGDAGRLVPVDDADGMAAALIGILEDD 350
Query: 436 REVLEKKGLVAR 447
+ + G VAR
Sbjct: 351 Q---LRAGYVAR 359
>pdb|3IEZ|A Chain A, Crystal Structure Of The Rasgap C-Terminal (Rgc) Domain Of
Iqgap2
pdb|3IEZ|B Chain B, Crystal Structure Of The Rasgap C-Terminal (Rgc) Domain Of
Iqgap2
pdb|4EZA|A Chain A, Crystal Structure Of The Atypical Phosphoinositide (Api)
Binding Domain Of Iqgap2
pdb|4EZA|B Chain B, Crystal Structure Of The Atypical Phosphoinositide (Api)
Binding Domain Of Iqgap2
Length = 114
Score = 32.3 bits (72), Expect = 0.55, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 132 SLYFHLSKP---TAAGYLDQSIVWQ--QLQTQNSTGKPFDVIHTESVGLRHTRARNLTNV 186
+LYF +KP TAA ++ ++ LQT FD+I TE VG+ R++ L
Sbjct: 13 NLYFQGAKPVKYTAAKLHEKGVLLDIDDLQTNQFKNVTFDIIATEDVGIFDVRSKFL--- 69
Query: 187 VVSWHGIAYETIHSDIIQELLRTPEE 212
G+ E + + IQ+LL+ E
Sbjct: 70 -----GVEMEKVQLN-IQDLLQMQYE 89
>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
pdb|1RZU|B Chain B, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
Length = 485
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 22/121 (18%)
Query: 233 PKYAHHVATSDHCGDVLKRIYMIPEERVHVILNGVDEEVFKP-------DVAMGKDFKKK 285
P YA + T++ G L+ + +H I+NG+D +V+ P D + K +
Sbjct: 215 PSYAEEILTAEF-GMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNR 273
Query: 286 ----------FGIPENRSLVLGMAGRLVKDKGHPLMFEALKQLLAENDTFRRSTVFLVAG 335
F I ++ S + + RL KG LM EA+ ++++ V L AG
Sbjct: 274 ALNKKAVAEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRL----VVLGAG 329
Query: 336 D 336
D
Sbjct: 330 D 330
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,369,578
Number of Sequences: 62578
Number of extensions: 596359
Number of successful extensions: 1120
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1112
Number of HSP's gapped (non-prelim): 12
length of query: 488
length of database: 14,973,337
effective HSP length: 103
effective length of query: 385
effective length of database: 8,527,803
effective search space: 3283204155
effective search space used: 3283204155
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)